Citrus Sinensis ID: 004961
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJD4 | 720 | Long chain acyl-CoA synth | yes | no | 0.936 | 0.937 | 0.737 | 0.0 | |
| Q9CAP8 | 691 | Long chain acyl-CoA synth | no | no | 0.947 | 0.988 | 0.635 | 0.0 | |
| O95573 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.944 | 0.945 | 0.445 | 1e-170 | |
| Q5R668 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.950 | 0.951 | 0.446 | 1e-169 | |
| Q9CZW4 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.950 | 0.951 | 0.446 | 1e-168 | |
| Q63151 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.950 | 0.951 | 0.446 | 1e-168 | |
| O35547 | 670 | Long-chain-fatty-acid--Co | no | no | 0.900 | 0.968 | 0.450 | 1e-165 | |
| O60488 | 711 | Long-chain-fatty-acid--Co | no | no | 0.940 | 0.953 | 0.435 | 1e-164 | |
| Q9QUJ7 | 711 | Long-chain-fatty-acid--Co | no | no | 0.940 | 0.953 | 0.439 | 1e-164 | |
| O60135 | 676 | Long-chain-fatty-acid--Co | yes | no | 0.879 | 0.937 | 0.340 | 1e-101 |
| >sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/675 (73%), Positives = 589/675 (87%)
Query: 46 KKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRK 105
KK K+RGVP++VGGE GY +R+A+ PELV+VPW+GA+TM ALFEQSCK + +DR LG R+
Sbjct: 45 KKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTRE 104
Query: 106 LLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165
+ K+F+TASDGRKFEKLHLG+Y+WQ+YGEVF+R C+FASGLVN GHNVD R AI ++T
Sbjct: 105 FIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDTR 164
Query: 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT 225
EWFIAFQGCFRQSITVVTIY+SLGE+ALI+SLNET+V+TLICDSKQLKKLSA+ SSLKT
Sbjct: 165 AEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKT 224
Query: 226 IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285
+KN+IY E DG + S + + TVSS SEVEKLG+++ V P LPS+NGVAVIM+TSG
Sbjct: 225 VKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSG 284
Query: 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
STGLPKGVMITHGN+VATAA + ++P ++D Y+AYLPLAHV EL AE ++ +G AI
Sbjct: 285 STGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAI 344
Query: 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF 405
GYGS +T+TDTS+K+KKGTKGDVS LKPT+M AVPAI DRVREGV+KKVEEKGG+ K LF
Sbjct: 345 GYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTLF 404
Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
+ YKRRLAAV+GSWFGAWGLE+MLWDA+VFK +RAVLGG IRFM+ GGAPLS DSQRFI
Sbjct: 405 DFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRFI 464
Query: 466 NICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525
NICMG+PIGQ YGLTETCAG+TFSEWDDP+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPM
Sbjct: 465 NICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKPM 524
Query: 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDI 585
PRGEIVVGG +VTAGYFNN KT EVYKVDE+G WFYTGDIG+ +PDGCLE+IDRKKDI
Sbjct: 525 PRGEIVVGGNSVTAGYFNNQEKTDEVYKVDEKGTRWFYTGDIGRFHPDGCLEVIDRKKDI 584
Query: 586 VKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKY 645
VKLQHGEY+SLGKVEAAL SS+YVDNIM+HADP ++YCVALVVPS ALEKWA EA +K+
Sbjct: 585 VKLQHGEYVSLGKVEAALGSSNYVDNIMVHADPINSYCVALVVPSRGALEKWAEEAGVKH 644
Query: 646 EDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705
+ +ELC K EAV EVQQ+L+K KAAKL+KFE+PAKIKL+ EPWTPE+GLVTAALKIKR
Sbjct: 645 SEFAELCEKGEAVKEVQQSLTKAGKAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIKR 704
Query: 706 EQLKAKFKDDLQMLY 720
EQ+K+KFKD+L LY
Sbjct: 705 EQIKSKFKDELSKLY 719
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/689 (63%), Positives = 548/689 (79%), Gaps = 6/689 (0%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQS 91
+++P+ L+ +V + KK K+RGV V+VGGEPGYAIRN + E V W+ ST+ LFE S
Sbjct: 8 VIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEIS 67
Query: 92 CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151
C +H FLG RKL+ ++ T+ DG+ FEKLHLGDYEW T+G+ + C FASGLV G
Sbjct: 68 CNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIG 127
Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
H + R AI A+T EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC SK
Sbjct: 128 HKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSK 187
Query: 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSL 271
+LKKL +S L+T+K VI ++ E S V+ SNW +SF++V+KLG+ +PVDP+
Sbjct: 188 ELKKLMDISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNF 241
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE 331
P VAVIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LE
Sbjct: 242 PLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILE 301
Query: 332 LAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
LAAES+M G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR+GV
Sbjct: 302 LAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVR 361
Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
KKV+ KGGL+K LF+ Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++
Sbjct: 362 KKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLL 421
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV
Sbjct: 422 SGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLV 481
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
W EGGY TSDKPMPRGEIV+GG N+T GYF N KT EVYKVDE+GM WFYTGDIG+ +
Sbjct: 482 DWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFH 541
Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSH 631
PDGCLEIIDRKKDIVKLQHGEY+SLGKVEAAL S YV+NIM+HAD F++YCVALVV S
Sbjct: 542 PDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVALVVASQ 601
Query: 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWT 691
+E WA + I + + ELC K +AV EV +L K AK ++L+KFEIPAKIKL+ PWT
Sbjct: 602 HTVEGWASKQGIDFANFEELCTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKLLASPWT 661
Query: 692 PEAGLVTAALKIKREQLKAKFKDDLQMLY 720
PE+GLVTAALK+KR+ ++ +F +DL LY
Sbjct: 662 PESGLVTAALKLKRDVIRREFSEDLTKLY 690
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 598 bits (1543), Expect = e-170, Method: Compositional matrix adjust.
Identities = 317/711 (44%), Positives = 436/711 (61%), Gaps = 30/711 (4%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ ++ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
+F +GL G T AI ET EW IA Q CF + +VT+Y++LG A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT-------V 252
T+VT +I + L+ KL + S + ++++I V G W+ V
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHII-----------TVDGKPPTWSEFPKGIIV 253
Query: 253 SSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
+ + VE LG ++ ++ S P + +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 254 HTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAE 313
Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD S
Sbjct: 314 RIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTS 373
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
+LKPTLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G
Sbjct: 374 MLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTP 427
Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS 489
L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T S
Sbjct: 428 LCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTIS 487
Query: 490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG +VT GY+ N KT
Sbjct: 488 EVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTK 547
Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
+ DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + V
Sbjct: 548 ADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLV 607
Query: 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVA 669
DNI +A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+ A
Sbjct: 608 DNICAYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEAA 666
Query: 670 KAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
+A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 667 ISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins). Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/707 (44%), Positives = 436/707 (61%), Gaps = 22/707 (3%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ ++ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
+F +GL G T AI ET EW IA Q CF + +VT+Y++LG A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE G+ V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGI-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
VE LG ++ ++ S P + +AVIMYTSGSTGLPKGVMI+H NI+A + IP
Sbjct: 258 AVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPE 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD S+LKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L ++
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTPLCNS 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T SE D
Sbjct: 432 FVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG VT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTKADFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + VDNI
Sbjct: 552 EDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
+A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+ A +A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEAAISAS 670
Query: 674 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 671 LEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 316/707 (44%), Positives = 433/707 (61%), Gaps = 22/707 (3%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ I+ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFIISLYTILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINS-VDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
F +GL G AI ET EW IA Q CF + +VT+Y++LG A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE GV V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
V+ LG ++ V+ S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ + IP
Sbjct: 258 AVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L D
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T +E D
Sbjct: 432 FVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
+A+ +H+Y + VVP+ K L + A K ELCN +E NEV + LS+ A +A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARTKGFK-GTWEELCNSSEMENEVLKVLSEAAISAS 670
Query: 674 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 671 LEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 316/707 (44%), Positives = 431/707 (60%), Gaps = 22/707 (3%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ I+ + IP ++K + PV + Y N+ + L V + G
Sbjct: 26 IHFIISLYTILTYIPFYFLCESKQEKPNHIKAKPVSSKPDSAYRSVNS-MDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
F +GL G AI ET EW IA Q CF + +VT+Y++LG A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE GV V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
V+ LG ++ VD S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ + IP
Sbjct: 258 AVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L D
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T +E D
Sbjct: 432 FVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
+A+ +H+Y + VVP+ K L + A ELCN +E NEV + LS+ A +A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARTKGFN-GTWEELCNSSEMENEVLKVLSEAAISAS 670
Query: 674 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 671 LEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 300/666 (45%), Positives = 416/666 (62%), Gaps = 17/666 (2%)
Query: 59 GEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGR 118
G P ++ + ++++P GA T+ LF+ + + LG R++L ++ +G+
Sbjct: 15 GSPYRSVTHFDSLAVIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72
Query: 119 KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
F+KL LG+Y+W Y EV R +F SGL G AI ET EW IA Q CF+
Sbjct: 73 VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132
Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGS 237
+ +VT+Y++LG++A++H LNE++ + LI + L+ KL A + +K++IY +N
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTI 192
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
+ G + S VE+LG + S + PS P+ + +A++MYTSGSTG PKGVM
Sbjct: 193 NRAEYPEG----LEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVM 248
Query: 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT 354
+ H N++A IP G D Y+ YLPLAHVLEL AE GC IGY S LT++
Sbjct: 249 MHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLS 308
Query: 355 DTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
D SSKIKKG+KGD +VLKPTLMAAVP I DR+ + V+ KV+E + K LF IGY +L
Sbjct: 309 DQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLE 368
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
++ G + L + I+FK V+A+LGG +R M+ GGAPLS + RF+N+C PIG
Sbjct: 369 QIKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIG 422
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
Q YGLTE+C T +E D + GRVG P+ CC IKL W EGGY DKP PRGEIV+GG
Sbjct: 423 QGYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGG 482
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
N++ GYF N KT+E Y VDE G WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+
Sbjct: 483 QNISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYV 542
Query: 595 SLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNK 654
SLGKVEAAL + +DNI A +Y ++ VVP+ K L A + ++ ++CN
Sbjct: 543 SLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVE-GSWVDICNN 601
Query: 655 AEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714
E+ + + + A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK +
Sbjct: 602 PAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLK 661
Query: 715 DLQMLY 720
D++ +Y
Sbjct: 662 DIERMY 667
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 580 bits (1494), Expect = e-164, Method: Compositional matrix adjust.
Identities = 302/694 (43%), Positives = 420/694 (60%), Gaps = 16/694 (2%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
+ IP +K + +R +PG R+ L + GA T+ LF+
Sbjct: 26 IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85
Query: 91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
+ + LG R++L ++ +G+ F+KL LG+Y+W Y EV R +F SGL
Sbjct: 86 AVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTAL 145
Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
G AI ET EW IA Q CF+ + +VT+Y++LG++A++H LNE++ + LI
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSV 205
Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
+ L+ KL + +K++IY +N K G + + S VE+LG
Sbjct: 206 ELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FEIHSMQSVEELGSNPENLG 261
Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
+ PS P+ + +A++MYTSGSTG PKGVM+ H N++A IP G D Y+ YLPL
Sbjct: 262 IPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321
Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
AHVLEL AE GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381
Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
+ V+ KV+E + K LF IGY +L ++ G + L + ++FK V+A+LGG
Sbjct: 382 YKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLFKKVKALLGGN 435
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
+R M+ GGAPLS + RF+N+C PIGQ YGLTE+C T +E D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
IKL W EGGY +DKP PRGEIV+GG N++ GYF N KT+E Y VDE G WF TGD
Sbjct: 496 EIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSVDENGQRWFCTGD 555
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVAL 626
IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI A +Y ++
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISF 615
Query: 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLM 686
VVP+ K L A + ++ ++CN E+ + + + A A KL++FEIP K++L
Sbjct: 616 VVPNQKRLTLLAQQKGVE-GTWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLS 674
Query: 687 PEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
PEPWTPE GLVT A K+KR++L+ + D++ +Y
Sbjct: 675 PEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 305/694 (43%), Positives = 419/694 (60%), Gaps = 16/694 (2%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
+ IP +K + +R +PG R+ L + GA T+ LF+
Sbjct: 26 IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85
Query: 91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
+ + LG R++L ++ +G+ F+KL LG+Y+W Y EV R +F SGL
Sbjct: 86 AVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGSGLTAL 145
Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
G AI ET EW IA Q CF+ + +VT+Y++LG +A++H LNE++ + LI
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSV 205
Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS---P 266
+ L+ KL A + +K++IY +N + G + S VE+LG +
Sbjct: 206 ELLESKLKAALVDINCVKHIIYVDNKTINRAEYPEG----LEIHSMQSVEELGAKPENLS 261
Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
V PS P+ + +A++MYTSGSTG PKGVM+ H N++A IP G D Y+ YLPL
Sbjct: 262 VPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321
Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
AHVLEL AE GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381
Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
+ V+ KV+E + K LF IGY +L ++ G + L + I+FK V+A+LGG
Sbjct: 382 YKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFKKVKALLGGN 435
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
+R M+ GGAPLS + RF+N+C PIGQ YGLTE+C T +E D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
IKL W EGGY DKP PRGEIV+GG N++ GYF N KT+E Y VDE G WF TGD
Sbjct: 496 EIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVDENGQRWFCTGD 555
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVAL 626
IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI A +Y ++
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISF 615
Query: 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLM 686
VVP+ K L A + ++ ++CN E+ + + + A A KL++FEIP K++L
Sbjct: 616 VVPNQKKLTLLAQQKGVE-GSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLS 674
Query: 687 PEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
PEPWTPE GLVT A K+KR++LK + D++ +Y
Sbjct: 675 PEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 708
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 230/676 (34%), Positives = 360/676 (53%), Gaps = 42/676 (6%)
Query: 66 RNAQIPE-LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVT-----ASDGRK 119
RNA P+ LVE T+ +F S K + +G R L+ + T DG K
Sbjct: 20 RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKMVTKVVDGEK 79
Query: 120 FE------KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ 173
E L DY + ++ +++D+A +A L G N + + A T W + +
Sbjct: 80 KEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAE 139
Query: 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233
C QS+T+VT Y +LGE+ L+HSL E+ V + + LK L +++++ +IY
Sbjct: 140 ACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIY-R 198
Query: 234 NDGSEKDSGVSGGIS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKG 292
ND E+D I N + F++ EK+ PS + IMYTSGSTGLPKG
Sbjct: 199 NDAKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEP--DPPSPEEICCIMYTSGSTGLPKG 256
Query: 293 VMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
V+++H N+VA AI +P D LAYLPLAH+LE A E+I L G IGY + T
Sbjct: 257 VILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWGGTIGYANVRT 316
Query: 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR 412
+ DT+ + KGD++ +PT+M VPA+++ VR+G++ K+ + +++F Y +
Sbjct: 317 LVDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTK 373
Query: 413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAV-LGGRIRFMICGGAPLSADSQRFINICMGA 471
+ + G+ L D VF +R++ GGR+R+ + GG+ LS D++RF++I +
Sbjct: 374 AKLMRHNLPGSCVL-----DTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-C 427
Query: 472 PIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
P+ YGLTE A + DD + G +PC +KLV +EG Y + P P
Sbjct: 428 PMLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-P 482
Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
RGEI + G ++T GY N + E + D WF TGD+G++ P+G L IIDRKK++V
Sbjct: 483 RGEIWLRGPSLTRGYLNRDKENKESFTPD----GWFRTGDVGELTPEGLLRIIDRKKNLV 538
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYE 646
K Q+GEYI+L K+E+ +S V NI ++AD +A++VP+ + K A E +
Sbjct: 539 KTQNGEYIALEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSP 598
Query: 647 DLS--ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 704
D S E+C+ + V L ++ ++ E+ + L+P +TPE GLVTAA K++
Sbjct: 599 DASWEEVCHNKKVRQLVYDDLIRIGRSHHFANIELIQNVVLVPIEFTPENGLVTAAQKLQ 658
Query: 705 REQLKAKFKDDLQMLY 720
R ++ +FK ++ Y
Sbjct: 659 RRKILDRFKKEIDAAY 674
|
Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| 255582880 | 730 | long-chain-fatty-acid CoA ligase, putati | 0.979 | 0.967 | 0.772 | 0.0 | |
| 224131896 | 679 | predicted protein [Populus trichocarpa] | 0.936 | 0.994 | 0.776 | 0.0 | |
| 225447498 | 719 | PREDICTED: long chain acyl-CoA synthetas | 0.950 | 0.952 | 0.755 | 0.0 | |
| 193290712 | 726 | putative long-chain acyl-CoA synthetase | 0.973 | 0.966 | 0.736 | 0.0 | |
| 356577566 | 725 | PREDICTED: long chain acyl-CoA synthetas | 0.981 | 0.976 | 0.739 | 0.0 | |
| 356547579 | 725 | PREDICTED: long chain acyl-CoA synthetas | 0.981 | 0.976 | 0.733 | 0.0 | |
| 317373793 | 711 | long-chain acyl-CoA synthetase 2 [Helian | 0.963 | 0.977 | 0.728 | 0.0 | |
| 449453754 | 732 | PREDICTED: long chain acyl-CoA synthetas | 0.981 | 0.967 | 0.716 | 0.0 | |
| 449511787 | 732 | PREDICTED: long chain acyl-CoA synthetas | 0.981 | 0.967 | 0.716 | 0.0 | |
| 357462487 | 727 | Annotation was added to scaffolds in Nov | 0.976 | 0.968 | 0.727 | 0.0 |
| >gi|255582880|ref|XP_002532212.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223528108|gb|EEF30181.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/713 (77%), Positives = 629/713 (88%), Gaps = 7/713 (0%)
Query: 12 ELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQ-RGVPVEVGGEPGYAIRNAQI 70
+L EKG G YGI+GAAIVA+ +PVLLS++ +KKVK+ RGVPVEVGGE GYAIRNA+
Sbjct: 22 QLSVEKGYGTYGILGAAIVAIFLPVLLSIVFLGRKKVKKVRGVPVEVGGEAGYAIRNART 81
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDG--RKFEKLHLGDY 128
P L+EVPW+GA+TMAALFEQSCK H Q RFLG RKL+ ++F+TASDG RKFEKLHLGDY
Sbjct: 82 PGLIEVPWEGATTMAALFEQSCKKHSQYRFLGTRKLVSREFITASDGSGRKFEKLHLGDY 141
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
EWQTYG+VFDRAC+FASGL+ HN D RAAI +ET EW IA QGC RQ+I+VVTIYSS
Sbjct: 142 EWQTYGQVFDRACNFASGLIRLEHNEDARAAIFSETREEWLIALQGCMRQNISVVTIYSS 201
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
LG+DAL+HSLNET+V TLICDSKQLKKL+A+SS L TIKNVIYFE++GS + +S
Sbjct: 202 LGDDALVHSLNETEVQTLICDSKQLKKLAAISSRLTTIKNVIYFEDEGS----AMPQSMS 257
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
NWTVSSF EVEK+GK +P+ PSLPS++G+AVIMYTSGSTGLPKGVMITHGNI+AT AA+
Sbjct: 258 NWTVSSFPEVEKMGKTNPLLPSLPSKDGIAVIMYTSGSTGLPKGVMITHGNIIATIAAVM 317
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
T IP G +DVYLAYLPLAHVLELAAES+ML AGCAIGYGS LT+TDT++KIKKGTKGD
Sbjct: 318 TTIPKLGTNDVYLAYLPLAHVLELAAESVMLTAGCAIGYGSALTLTDTANKIKKGTKGDA 377
Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
S+LKPTLMAAVP I DRVREGV KKV+EKGGL K LF+IGYKRR AA+EGSWFGAWGLER
Sbjct: 378 SMLKPTLMAAVPTILDRVREGVQKKVDEKGGLAKKLFDIGYKRRQAAIEGSWFGAWGLER 437
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
+LWDAIVF+++RA LGG IRFM+CGGAPLS DSQRFINICMGA IGQAYGLTETCAG+ F
Sbjct: 438 VLWDAIVFRTIRAGLGGHIRFMLCGGAPLSGDSQRFINICMGAIIGQAYGLTETCAGAAF 497
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
S+WDD SVGRVGPPVPCCYIKLVSW+EGGY+ SDKPMPRGEIVVGGF+VT+GYF + KT
Sbjct: 498 SDWDDTSVGRVGPPVPCCYIKLVSWEEGGYRISDKPMPRGEIVVGGFSVTSGYFKSHEKT 557
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS Y
Sbjct: 558 NEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSGY 617
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKV 668
VDNIM++ADP NYCVALVVPSH+ALEKWA I+Y++ SELCNK E++ EVQQ+L KV
Sbjct: 618 VDNIMLYADPLKNYCVALVVPSHQALEKWAQGVGIEYQNFSELCNKDESITEVQQSLLKV 677
Query: 669 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
KAAKLDKFEIPAKIKL+P+PWTPE+GLVTAALKIKREQLK+KFK++LQ LY+
Sbjct: 678 GKAAKLDKFEIPAKIKLLPDPWTPESGLVTAALKIKREQLKSKFKEELQKLYE 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131896|ref|XP_002321205.1| predicted protein [Populus trichocarpa] gi|222861978|gb|EEE99520.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/675 (77%), Positives = 597/675 (88%)
Query: 45 KKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKR 104
KKKVKQRGVPVEVGGE GYA+RNA+ ELVEVPWKGA+TMAALFEQSC+ H +RFLG R
Sbjct: 3 KKKVKQRGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQSCRKHSPERFLGTR 62
Query: 105 KLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164
KL+ K+FVTASDGRKFEKLHLGDYEWQTYG+VFDR C+FASGL+ GHN D RAAI A+T
Sbjct: 63 KLISKEFVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDARAAIFADT 122
Query: 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK 224
EW IAFQGCFRQ+ITVVT+Y+SLG DALIHSLNETQV+TLICD KQLK L+A+SS +
Sbjct: 123 RAEWLIAFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKIT 182
Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
TIKNVIYFE+ + D G+S S W VSSFSEVE+LGK S V PSLP++NG+AV+MYTS
Sbjct: 183 TIKNVIYFEDGETTNDLGLSASTSYWKVSSFSEVEELGKNSHVPPSLPTKNGIAVVMYTS 242
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCA 344
GSTG PKGVMITHGNIVATAAA+ T+IP +DVYLAYLPLAHV ELAAES+ML GCA
Sbjct: 243 GSTGQPKGVMITHGNIVATAAAVMTVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCA 302
Query: 345 IGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
IGYGS LT+TDTS+KIKKGTKGD S+L PTLM AVPAI DRVR+GV+KKVEEKGGL K L
Sbjct: 303 IGYGSALTLTDTSNKIKKGTKGDASMLNPTLMLAVPAILDRVRDGVLKKVEEKGGLAKKL 362
Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
FNIG KRR+AA+EGSWFG LERMLWD I FK +RA+LG R++F++CGGAPLS DSQRF
Sbjct: 363 FNIGCKRRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQFILCGGAPLSGDSQRF 422
Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
NICMGA IGQAYGLTETCAG+ ++EWDDPSVGRVGPP+PCCY+KLVSW+EGGY +DKP
Sbjct: 423 TNICMGAIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKP 482
Query: 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
MPRGE+VVGGF+VTAGYFN KT+EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKD
Sbjct: 483 MPRGEVVVGGFSVTAGYFNYQEKTNEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKD 542
Query: 585 IVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIK 644
IVKLQHGEYISLGKVEAAL SSDYVDNIM+HA+PFHNYCVAL+VPSH+ LEKWA EA I+
Sbjct: 543 IVKLQHGEYISLGKVEAALTSSDYVDNIMVHANPFHNYCVALIVPSHRILEKWAQEAGIQ 602
Query: 645 YEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 704
+++ SELCN+A+AV+EV+Q+LSKVAKA +LDKFE PAKIKL+P+PWTPE+GLVTAALKIK
Sbjct: 603 HQNFSELCNEADAVSEVEQSLSKVAKALRLDKFETPAKIKLLPDPWTPESGLVTAALKIK 662
Query: 705 REQLKAKFKDDLQML 719
REQLK+KFKD+LQ L
Sbjct: 663 REQLKSKFKDELQKL 677
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447498|ref|XP_002267417.1| PREDICTED: long chain acyl-CoA synthetase 8 [Vitis vinifera] gi|296085053|emb|CBI28468.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/687 (75%), Positives = 604/687 (87%), Gaps = 2/687 (0%)
Query: 35 PVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKS 94
P+L S+++ KKKVKQRGVPVEVG E G+A+RN++ ELVEVPW+GA+T+AALFEQSC
Sbjct: 32 PLLFSIILVGKKKVKQRGVPVEVGDELGFAMRNSRYTELVEVPWEGATTIAALFEQSCGK 91
Query: 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154
H +D FLG RKL+ ++F+TA DGRKFEK+HLG+Y+W+TY E+F+RAC+FASGL+ GHNV
Sbjct: 92 HSRDPFLGTRKLINREFITAGDGRKFEKVHLGEYQWETYEEIFNRACNFASGLIKLGHNV 151
Query: 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK 214
D+ AI ++T EW IAFQGCFRQ+IT+VTIY+SLGEDALIHSLNETQ++TLICDSKQLK
Sbjct: 152 DSHVAIFSDTQAEWLIAFQGCFRQNITIVTIYASLGEDALIHSLNETQISTLICDSKQLK 211
Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
KL+++SS L+ IKNVIYF+N S DS SG +SNWTVS+FSEVEKLGK +PV P LPS+
Sbjct: 212 KLASISSRLEMIKNVIYFDNAAS--DSDFSGDMSNWTVSTFSEVEKLGKENPVHPRLPSK 269
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
+AV+MYTSGSTGLPKGVM+THGNIVATAAA+ T+IP G D+YLAYLPLAHV ELAA
Sbjct: 270 TDIAVVMYTSGSTGLPKGVMMTHGNIVATAAAVMTVIPELGSKDIYLAYLPLAHVFELAA 329
Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
E++M+ AGCAIGYGS LT+TDTS+KI+KGTKGD S+LKPTLMA VPAI DRVR+GV+K+V
Sbjct: 330 ETVMMAAGCAIGYGSALTLTDTSNKIQKGTKGDASMLKPTLMATVPAILDRVRDGVLKQV 389
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
E KGGL K LFNIGYKRRLAAVEGS FGAWGLER+ WDAIVFK +R++LGG IRFM+CGG
Sbjct: 390 EAKGGLVKKLFNIGYKRRLAAVEGSCFGAWGLERVFWDAIVFKKIRSLLGGHIRFMLCGG 449
Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
APLS D+QRFINICMGAPIGQ YGLTETCAG+TF+E DDP+VG VGPP+PC YIKLVSW+
Sbjct: 450 APLSGDTQRFINICMGAPIGQGYGLTETCAGATFTEPDDPNVGHVGPPLPCAYIKLVSWE 509
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
EGGYKTSDKPMPRGE+VVGG+++TAGYFNN KT E YKVDERGM WFYTGDIGQ P+G
Sbjct: 510 EGGYKTSDKPMPRGEVVVGGYSITAGYFNNEEKTKEAYKVDERGMRWFYTGDIGQFQPNG 569
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKAL 634
CLEIIDRKKDIVKLQHGEYISLGKVEAAL+ S+YVDNIM++ADP HNYCVALVVPSH+ L
Sbjct: 570 CLEIIDRKKDIVKLQHGEYISLGKVEAALMGSNYVDNIMVYADPLHNYCVALVVPSHQVL 629
Query: 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEA 694
EKWA A IKY+D SELCNK E V EVQQ+LSKVAKAAKLDKFE PAKIKL+ E WTPE+
Sbjct: 630 EKWAEAAGIKYKDFSELCNKEETVGEVQQSLSKVAKAAKLDKFETPAKIKLVAEQWTPES 689
Query: 695 GLVTAALKIKREQLKAKFKDDLQMLYQ 721
GLVTAALK+KREQ+K KFKDDL LY+
Sbjct: 690 GLVTAALKLKREQIKTKFKDDLVKLYE 716
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|193290712|gb|ACF17664.1| putative long-chain acyl-CoA synthetase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/705 (73%), Positives = 617/705 (87%), Gaps = 3/705 (0%)
Query: 17 KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
K G G+ GA +A+++P++LSM++ KKK KQRGVPV+VGGE G A+RN + LVEV
Sbjct: 25 KNYGSSGVTGAVFIAIIMPIILSMLLMGKKKAKQRGVPVQVGGEAGLAMRNVKSARLVEV 84
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
PW+GA+T+ ALFEQSCK H DR LG RKL+ +DFVTASDGRKFEKLHLG+Y+W++YG+V
Sbjct: 85 PWEGATTVPALFEQSCKKHSSDRCLGTRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQV 144
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
FDR C+FASGL+ FGH+VDT AAI AET EW IAFQGCFRQ+ITVVTIY+SLG+DALIH
Sbjct: 145 FDRTCNFASGLIKFGHDVDTHAAICAETRPEWIIAFQGCFRQNITVVTIYASLGDDALIH 204
Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
SLNETQV+TLICD+KQLKK+++VSSSLKTIKNVIYFE+D + DS I +W +SSFS
Sbjct: 205 SLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETAIDST---NIDSWRMSSFS 261
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
VEKLGK SP+ P LP + +AVIMYTSGSTGLPKGVMITHGNIVAT+AA+ T+IPN G
Sbjct: 262 AVEKLGKNSPIQPRLPIKEDIAVIMYTSGSTGLPKGVMITHGNIVATSAAVMTVIPNLGS 321
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
SDVYLAYLPLAHV ELAAE++ML AG IGYGS LT+TDTS+K+ KGTKGD +VLKPTLM
Sbjct: 322 SDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLM 381
Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
AAVPAI DRVR+GV+KKVEEK G K LF+IG+ RRLAA+EGSWFGAWGLE+ LWD I+F
Sbjct: 382 AAVPAILDRVRDGVMKKVEEKAGSAKKLFHIGFNRRLAAMEGSWFGAWGLEKQLWDIIIF 441
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
K VRAVLGG IRFM+CGGAPLS D+QRFINICMGAPIGQ YGLTET AG+TFSEWDDPSV
Sbjct: 442 KKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGATFSEWDDPSV 501
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
GRVGPP+PC YIKLV+W+EGGY+ DKPMPRGE+VVGG ++TAGYFNN KT+EVYKVDE
Sbjct: 502 GRVGPPLPCSYIKLVTWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEDKTNEVYKVDE 561
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
RGM WFYTGDIG+ +PDGC+EIIDRKKDI+KLQHGEYISLGKVEAAL+SSDYV++IM++A
Sbjct: 562 RGMRWFYTGDIGRFHPDGCIEIIDRKKDIIKLQHGEYISLGKVEAALLSSDYVESIMVYA 621
Query: 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDK 676
DPFH+YCVALVVPS + LEKW+ E SI+++D SELC+KAE+VNE++Q++SKVAKAA+L+K
Sbjct: 622 DPFHSYCVALVVPSRQVLEKWSQENSIQHKDFSELCDKAESVNEIKQSISKVAKAARLEK 681
Query: 677 FEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
FE+PAKI L+PE WTPE GLVTAALK+KRE LKA++K++L+ LYQ
Sbjct: 682 FELPAKINLIPESWTPETGLVTAALKLKREPLKARYKNELEKLYQ 726
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577566|ref|XP_003556895.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/710 (73%), Positives = 608/710 (85%), Gaps = 2/710 (0%)
Query: 11 SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
S++ K G YG + A ++++L+PVL S + KKK K RGVPVEVGGE +A+RNA+
Sbjct: 17 SDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
ELVEVPWKGA TMA LFEQSC + +RFLG RKL+ K+ VT+SDGRKFEKLHLGDYEW
Sbjct: 77 TELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEW 136
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+TYGEVF R +FASGL+ GHN D+R AI ++T EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
EDALIHSLNET+V+TLICDSKQLKKL A+ S L +++N+IYFE+D E SG S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEE--DAFSGSSSGW 254
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
IPN G DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+ YKRRLAAV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLM 434
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
WD IVFK +R+ LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
WDD SVGRVGPP+PCCYIKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N KT+E
Sbjct: 495 WDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNE 554
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL S DYVD
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALSSCDYVD 614
Query: 611 NIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAK 670
NIM++ADPFHNYCVALVV S ++LEKWA +A I Y+D +LCNK E V EV Q++SKVAK
Sbjct: 615 NIMVYADPFHNYCVALVVASQQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAK 674
Query: 671 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
+AKL+K EIPAKIKL+P+PWTPE+GLVTAALKIKREQLKAKFKDDLQ LY
Sbjct: 675 SAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDDLQKLY 724
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547579|ref|XP_003542188.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/710 (73%), Positives = 608/710 (85%), Gaps = 2/710 (0%)
Query: 11 SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
S++ KG G YG + A ++++L+PVL S + KKK K RGVPVEVGGE +A+RNA+
Sbjct: 17 SDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
ELVEVPWKGA TMA LFEQSC + +++FLG RK++ K+FVT+SDGRKFEKLHLGDYEW
Sbjct: 77 TELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEW 136
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+TYGEVF R +FASGL+ GHN D+R AI ++T EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
EDALIHSLNET+V+TLICDSKQ KKL A+ S L +++NVIYFE+D E SG S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEE--DAFSGSSSGW 254
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
IPN G DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+ YKRRL AV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLM 434
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
WD IVFK +R LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
WDD SVGRVGPP+PCC+IKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N KT E
Sbjct: 495 WDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKE 554
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGK+EAAL S D+VD
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKIEAALSSCDHVD 614
Query: 611 NIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAK 670
NIM++ADPFHNYCVALVV SH++LEKWA +A I Y+D +LCNK E V EV Q++SKVAK
Sbjct: 615 NIMVYADPFHNYCVALVVASHQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAK 674
Query: 671 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
+AKL+K EIPAKIKL+P+PWTPE+GLVTAALKIKREQLKAKFKD+LQ LY
Sbjct: 675 SAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDELQKLY 724
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317373793|gb|ADV16379.1| long-chain acyl-CoA synthetase 2 [Helianthus annuus] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/699 (72%), Positives = 606/699 (86%), Gaps = 4/699 (0%)
Query: 22 YGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGA 81
YG A + A+ +P++LS M KKKVKQRGVPVEVGGEPG+ +RN + +LV+VPW+GA
Sbjct: 16 YGAAIAVLFAVAVPLVLSSMFVGKKKVKQRGVPVEVGGEPGFGMRNVRSKKLVDVPWEGA 75
Query: 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRAC 141
+TMAALFEQSCK H Q RFLG RKL+ + F+ S GRKFEKLHLG+YEW+T+G+VF+R C
Sbjct: 76 TTMAALFEQSCKKHSQHRFLGTRKLIERSFIDGSGGRKFEKLHLGEYEWETFGQVFERVC 135
Query: 142 SFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201
+FASGL+ GH+ DTR AI ++T EW IAF+GCFRQ+ITVVTIY+SLG+DALIHSLNET
Sbjct: 136 NFASGLIQLGHDPDTRIAIFSDTRAEWLIAFEGCFRQNITVVTIYASLGDDALIHSLNET 195
Query: 202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
+V+TLICDSK LKK+++VSSSL+T+ NVIYFE+D +E S I +W +SSFSEVEK+
Sbjct: 196 KVSTLICDSKLLKKVASVSSSLETVTNVIYFESDNTEALSK----IGDWQISSFSEVEKM 251
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321
G+ SPV LP + +AVIMYTSGSTGLPKGVM+THGN+VATAAA+ T+IP G SDVY+
Sbjct: 252 GRNSPVKARLPIKKDIAVIMYTSGSTGLPKGVMMTHGNVVATAAAVMTVIPGIGTSDVYM 311
Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
AYLPLAH+ ELAAE++M+ AG +IGYGS LT+TDTS+KIKKGT GD + LKPTLMA+VPA
Sbjct: 312 AYLPLAHIFELAAETVMITAGSSIGYGSALTLTDTSNKIKKGTMGDATALKPTLMASVPA 371
Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
I DRVR+GVVKKVEEKGGLT LFNI Y+RRL AV+GSW GAWGLE++LWDAIVFK +++
Sbjct: 372 ILDRVRDGVVKKVEEKGGLTTKLFNIAYQRRLLAVDGSWLGAWGLEKLLWDAIVFKKIQS 431
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501
VLGG++RFM+CGGAPL+AD+QRFIN+C+GAPIGQ YGLTETCAG+ FSE DD SVGRVGP
Sbjct: 432 VLGGKMRFMLCGGAPLAADTQRFINVCIGAPIGQGYGLTETCAGAAFSEADDNSVGRVGP 491
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
P+PC YIKLVSWDEGGY TSDKPMPRGE+VVGG++VTAGYFNN KT EV+KVDE GM W
Sbjct: 492 PLPCVYIKLVSWDEGGYLTSDKPMPRGEVVVGGYSVTAGYFNNEEKTKEVFKVDESGMRW 551
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621
FYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL SS YV+N+M+HADPFH+
Sbjct: 552 FYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALASSKYVENVMLHADPFHS 611
Query: 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA 681
YCVALVVP H+ LE+WA A I Y+D ++LC+K E+V+EV Q+L+KVAK AKLDKFEIPA
Sbjct: 612 YCVALVVPPHQVLEQWAQSAGISYKDFADLCDKKESVSEVLQSLNKVAKDAKLDKFEIPA 671
Query: 682 KIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
KIKLMPEPWTPE+GLVTAALK+KREQLKAKFKDDLQMLY
Sbjct: 672 KIKLMPEPWTPESGLVTAALKLKREQLKAKFKDDLQMLY 710
|
Source: Helianthus annuus Species: Helianthus annuus Genus: Helianthus Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453754|ref|XP_004144621.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/708 (71%), Positives = 602/708 (85%)
Query: 14 LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
L +G GI GIVG + +LI +LL +V KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25 LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84
Query: 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
+VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85 SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
GEVF+RAC+FASGLV GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
L+HSLNET+V+TLIC+SKQL+KL +SSSL T++N+IYFE+ G E D S S W V
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
SFSEV KLG +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE+G+ WFYTGDIG +PDGCLEIIDRKKDIVKLQHGEYISLGK EAAL+SS YVDN+M
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGKAEAALLSSKYVDNVM 624
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
++ADPFHNYCVA+VVP ALE+WA EA I Y D S+LC E ++EVQ++LSKV K AK
Sbjct: 625 VYADPFHNYCVAVVVPLRPALEEWAKEAGINYGDFSQLCENGEIISEVQRSLSKVGKDAK 684
Query: 674 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
L KFEIP KI L P+PWTPE+GLVTAALKIKREQ+KAKFKD LQ LY+
Sbjct: 685 LQKFEIPEKIVLAPDPWTPESGLVTAALKIKREQVKAKFKDQLQQLYK 732
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511787|ref|XP_004164053.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/708 (71%), Positives = 602/708 (85%)
Query: 14 LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
L +G GI GIVG + +LI +LL +V KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25 LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84
Query: 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
+VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85 SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
GEVF+RAC+FASGLV GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
L+HSLNET+V+TLIC+SKQL+KL +SSSL T++N+IYFE+ G E D S S W V
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
SFSEV KLG +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE+G+ WFYTGDIG +PDGCLEIIDRKKDIVKLQHGEYISLGK EAAL+SS YVDN+M
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGKAEAALLSSKYVDNVM 624
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
++ADPFHNYCVA+VVP ALE+WA EA I Y D S+LC E ++EVQ++LSKV K AK
Sbjct: 625 VYADPFHNYCVAVVVPLRPALEEWAKEAGINYGDFSQLCENGEIISEVQRSLSKVGKDAK 684
Query: 674 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
L KFEIP KI L P+PWTPE+GLVTAALKIKREQ+KAKFKD LQ LY+
Sbjct: 685 LQKFEIPEKIVLAPDPWTPESGLVTAALKIKREQVKAKFKDQLQQLYK 732
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462487|ref|XP_003601525.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357469953|ref|XP_003605261.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355490573|gb|AES71776.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355506316|gb|AES87458.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/704 (72%), Positives = 599/704 (85%)
Query: 17 KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
K G G V A ++ +++PVL S+ KKK K RGVPVEV GE GYA+RNA+ ELVEV
Sbjct: 23 KDHGELGTVFAIVIGIIVPVLFSVFFLGKKKGKVRGVPVEVSGESGYAVRNARYSELVEV 82
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
PWKGA TMA LFEQSCK H +RFLG RKL+GK+FVT+SDGRKFEK+HLG+YEW+TYGEV
Sbjct: 83 PWKGAPTMAHLFEQSCKKHTHNRFLGTRKLIGKEFVTSSDGRKFEKVHLGEYEWETYGEV 142
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
F R +FASGL+ GH++D+ AI ++T EWFIA QGCFRQ+ITVVTIY+SLGEDALIH
Sbjct: 143 FARVSNFASGLLKLGHDIDSHVAIFSDTRAEWFIALQGCFRQNITVVTIYASLGEDALIH 202
Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
SLNETQV+TLICD K L KL A+ S L +++N+IYFE+D E+ + G SN ++SF
Sbjct: 203 SLNETQVSTLICDVKLLNKLDAIRSKLTSLQNIIYFEDDSKEEHTFSEGLSSNCKIASFD 262
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
EVEKLGK SPV+PSLPS+N VAV+MYTSGSTGLPKGVMITHGNIVAT AA+ T+IPN G
Sbjct: 263 EVEKLGKESPVEPSLPSKNAVAVVMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGS 322
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
DVYLAYLPLAHV E+AAES+ML AG AIGYGS +T+TDTS+K+KKGTKGDV+VLKPTL+
Sbjct: 323 KDVYLAYLPLAHVFEMAAESVMLAAGVAIGYGSPMTLTDTSNKVKKGTKGDVTVLKPTLL 382
Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
AVPAI DR+R+GVVKKVEEKGGL KNLF I YKRRLAAV+GSW GAWG+E+++WD I+F
Sbjct: 383 TAVPAIIDRIRDGVVKKVEEKGGLAKNLFQIAYKRRLAAVKGSWLGAWGVEKLVWDTIIF 442
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
K +R VLGG +RFM+CGGAPLS DSQ+FINIC+GAPIGQ YGLTET AG+ FSE DD SV
Sbjct: 443 KKIRTVLGGNLRFMLCGGAPLSGDSQQFINICVGAPIGQGYGLTETFAGAAFSEADDYSV 502
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
GRVGPP+PCCYIKLVSW+EGGY +SDKPMPRGE+VVGGF+VTAGYF N KT EV+KVDE
Sbjct: 503 GRVGPPLPCCYIKLVSWEEGGYLSSDKPMPRGEVVVGGFSVTAGYFKNQDKTDEVFKVDE 562
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
+G+ WFYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL S DYVD+IM+HA
Sbjct: 563 KGVRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALASGDYVDSIMVHA 622
Query: 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDK 676
DPFH+YCVALVV SH++LEKWA E I+Y+D +LCNK EAV EV Q++SK AKAAKL K
Sbjct: 623 DPFHSYCVALVVASHQSLEKWAQETGIEYKDFPDLCNKPEAVTEVLQSISKAAKAAKLQK 682
Query: 677 FEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
E+PAKIKL+ +PWTPE+GLVTAALK+KREQLKAKF DDLQ LY
Sbjct: 683 TEVPAKIKLLADPWTPESGLVTAALKLKREQLKAKFNDDLQKLY 726
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| TAIR|locus:2058384 | 720 | LACS8 "AT2G04350" [Arabidopsis | 0.976 | 0.977 | 0.668 | 2.5e-262 | |
| TAIR|locus:2204765 | 691 | LACS9 "AT1G77590" [Arabidopsis | 0.937 | 0.978 | 0.602 | 3.4e-228 | |
| UNIPROTKB|O95573 | 720 | ACSL3 "Long-chain-fatty-acid-- | 0.882 | 0.883 | 0.465 | 5.4e-150 | |
| UNIPROTKB|J9P9G0 | 720 | ACSL3 "Uncharacterized protein | 0.882 | 0.883 | 0.457 | 1e-148 | |
| UNIPROTKB|F1MEX9 | 720 | ACSL3 "Uncharacterized protein | 0.882 | 0.883 | 0.453 | 2.7e-148 | |
| MGI|MGI:1921455 | 720 | Acsl3 "acyl-CoA synthetase lon | 0.882 | 0.883 | 0.457 | 5.5e-148 | |
| RGD|70552 | 720 | Acsl3 "acyl-CoA synthetase lon | 0.882 | 0.883 | 0.457 | 5.5e-148 | |
| UNIPROTKB|F1P451 | 720 | ACSL3 "Uncharacterized protein | 0.925 | 0.926 | 0.436 | 1.2e-147 | |
| UNIPROTKB|F1SR72 | 720 | ACSL3 "Uncharacterized protein | 0.883 | 0.884 | 0.458 | 1.5e-147 | |
| UNIPROTKB|F1MBW3 | 722 | ACSL4 "Uncharacterized protein | 0.880 | 0.879 | 0.444 | 2.8e-146 |
| TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2524 (893.6 bits), Expect = 2.5e-262, P = 2.5e-262
Identities = 472/706 (66%), Positives = 563/706 (79%)
Query: 17 KGS--GIYXXXXXXXXXXXXXXXXSMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELV 74
KGS G+Y S+++ KK K+R Y +R+A+ PELV
Sbjct: 14 KGSDFGVYGIIGGGIVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELV 73
Query: 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYG 134
+VPW+GA+TM ALFEQSCK + +DR LG R+ + K+F+TASDGRKFEKLHLG+Y+WQ+YG
Sbjct: 74 DVPWEGAATMPALFEQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYG 133
Query: 135 EVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL 194
EVF+R C+FASGLVN GHNVD R AI ++T EWFIAFQGCFRQSITVVTIY+SLGE+AL
Sbjct: 134 EVFERVCNFASGLVNVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEAL 193
Query: 195 IHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSS 254
I+SLNET+V+TLICD T+KN+IY E DG + S + + TVSS
Sbjct: 194 IYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSS 253
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
SEVEKLG+++ V P LPS+NGVAVIM+TSGSTGLPKGVMITHGN+VATAA + ++P
Sbjct: 254 ISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKL 313
Query: 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374
++D Y+AYLPLAHV EL AE ++ +G AIGYGS +T+TDTS+K+KKGTKGDVS LKPT
Sbjct: 314 DKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPT 373
Query: 375 LMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
+M AVPAI DRVR + K LF+ YKRRLAAV+GSWFGAWGLE+MLWDA+
Sbjct: 374 IMTAVPAILDRVREGVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDAL 433
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
VFK +RAVLGG IRFM+ GGAPLS DSQRFINICMG+PIGQ YGLTETCAG+TFSEWDDP
Sbjct: 434 VFKKIRAVLGGHIRFMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDP 493
Query: 495 SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPMPRGEIVVGG +VTAGYFNN KT EVYKV
Sbjct: 494 AVGRVGPPLPCGYVKLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
DE+G WFYTGDIG+ +PDGCLE+IDRKKDIVKLQHGEY+SLGKVEAAL SS+YVDNIM+
Sbjct: 554 DEKGTRWFYTGDIGRFHPDGCLEVIDRKKDIVKLQHGEYVSLGKVEAALGSSNYVDNIMV 613
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
HADP ++YCVALVVPS ALEKWA EA +K+ + +ELC K EAV EVQQ+L+K KAAKL
Sbjct: 614 HADPINSYCVALVVPSRGALEKWAEEAGVKHSEFAELCEKGEAVKEVQQSLTKAGKAAKL 673
Query: 675 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
+KFE+PAKIKL+ EPWTPE+GLVTAALKIKREQ+K+KFKD+L LY
Sbjct: 674 EKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSKFKDELSKLY 719
|
|
| TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
Identities = 411/682 (60%), Positives = 511/682 (74%)
Query: 39 SMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQD 98
+ +V + KK K+R YAIRN + E V W+ ST+ LFE SC +H
Sbjct: 15 TFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEISCNAHSDR 74
Query: 99 RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158
FLG RKL+ ++ T+ DG+ FEKLHLGDYEW T+G+ + C FASGLV GH + R
Sbjct: 75 VFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIGHKTEERV 134
Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXX 218
AI A+T EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC
Sbjct: 135 AIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSKELKKLMD 194
Query: 219 XXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVA 278
T+K VI ++ E S V+ SNW +SF++V+KLG+ +PVDP+ P VA
Sbjct: 195 ISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNFPLSADVA 248
Query: 279 VIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
VIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LELAAES+M
Sbjct: 249 VIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILELAAESVM 308
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR
Sbjct: 309 ATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVRKKVDAKG 368
Query: 399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
L+K LF+ Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++ GGAPLS
Sbjct: 369 GLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLLSGGAPLS 428
Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV W EGGY
Sbjct: 429 GDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLVDWAEGGY 488
Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
TSDKPMPRGEIV+GG N+T GYF N KT EVYKVDE+GM WFYTGDIG+ +PDGCLEI
Sbjct: 489 LTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFHPDGCLEI 548
Query: 579 IDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWA 638
IDRKKDIVKLQHGEY+SLGKVEAAL S YV+NIM+HAD F++YCVALVV S +E WA
Sbjct: 549 IDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVALVVASQHTVEGWA 608
Query: 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698
+ I + + ELC K +AV EV +L K AK ++L+KFEIPAKIKL+ PWTPE+GLVT
Sbjct: 609 SKQGIDFANFEELCTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKLLASPWTPESGLVT 668
Query: 699 AALKIKREQLKAKFKDDLQMLY 720
AALK+KR+ ++ +F +DL LY
Sbjct: 669 AALKLKRDVIRREFSEDLTKLY 690
|
|
| UNIPROTKB|O95573 ACSL3 "Long-chain-fatty-acid--CoA ligase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 304/653 (46%), Positives = 404/653 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H+LNET+VT +I ++++I DG S GI
Sbjct: 197 AIVHALNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGI--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + VE LG ++ ++ P S P + +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 AERIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRN 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
SE D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG +VT GY+ N K
Sbjct: 486 ISEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
VDNI +A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+
Sbjct: 606 LVDNICAYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSE 664
Query: 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 665 AAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
|
| UNIPROTKB|J9P9G0 ACSL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
Identities = 299/653 (45%), Positives = 401/653 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + + LG R++L +D +G+ F+K+ LG+Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKDKKLLGTREILSEDDEVQPNGKIFKKVILGNYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ + P S P +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVQALGAKASTENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 AERIPGLGEGDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
++LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TTMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFVLAYNYKMEQISR------GHG 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D +F+ VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+C T
Sbjct: 426 TPLCDRFIFRKVRGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTIGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLS 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
VDNI +A+ +H+Y + +VP+ K L + A + ++ ELCN E NEV + LS+
Sbjct: 606 LVDNICAYANSYHSYVIGFIVPNQKELTELARKKGLQ-GTWEELCNSCEMENEVLKVLSE 664
Query: 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 665 AAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
|
| UNIPROTKB|F1MEX9 ACSL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 296/653 (45%), Positives = 400/653 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMHAKNKFKDKRLLGTREILNEEDEVQPNGKVFKKVILGSYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW +A Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMVAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V LG ++ ++ P S P+ + +AVIMYTSGSTG+PKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVRALGAKASMENKPLSKPAPSDIAVIMYTSGSTGIPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D KIKKG+KGD
Sbjct: 312 AERIPELGEKDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQVFKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GHS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D+ +F+ VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+C T
Sbjct: 426 TPLCDSFIFRKVRGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A + + ELCN E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARRKGL-HGTWEELCNSCEMENEVLKVLSE 664
Query: 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 665 AAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
|
|
| MGI|MGI:1921455 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 299/653 (45%), Positives = 399/653 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA F +GL G AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ V+ S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ +
Sbjct: 252 IVHTMAAVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
SVLKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDRFVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKTDFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A K ELCN +E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFK-GTWEELCNSSEMENEVLKVLSE 664
Query: 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 665 AAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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| RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 299/653 (45%), Positives = 398/653 (60%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA F +GL G AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ VD S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ +
Sbjct: 252 IVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
SVLKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A ELCN +E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFN-GTWEELCNSSEMENEVLKVLSE 664
Query: 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 665 AAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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| UNIPROTKB|F1P451 ACSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 298/683 (43%), Positives = 414/683 (60%)
Query: 42 VARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFL 101
+A+ K+VK R Y N+ + L V + G T+ +F+ + + + L
Sbjct: 45 IAKSKQVKARPVNNRPGGA--YRSVNS-LHCLASVLYPGCDTLDKVFKYAKTKYKDKKLL 101
Query: 102 GKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161
G R++L ++ G+ F+K+ LG Y W +Y +V+ +A +F +GL G T AI
Sbjct: 102 GTREILKEEDEIQPSGKVFKKVILGKYTWLSYEDVYIKAVNFGNGLAVLGQQPKTNIAIF 161
Query: 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXX 221
ET EW IA Q CF + +VT+Y++LG A++H LNET+VTT+I
Sbjct: 162 CETRAEWMIAAQACFMCNYQLVTLYATLGGAAIVHGLNETEVTTIITSKELMQTKLKEIV 221
Query: 222 XXXT-IKNVIYFENDGSEKD-SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV 279
++++I DG S G+ T++S + + P + +AV
Sbjct: 222 SQIPRLRHIITV--DGKPTTWSEFPKGVIVHTMASVQAMGAKADSGNKQQARPVPSDIAV 279
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIML 339
IMYTSGSTG+PKGVMI+H NI+A + IPN G D+Y+ YLPLAHVLEL+AE + L
Sbjct: 280 IMYTSGSTGIPKGVMISHCNIIAGITGMAERIPNLGEKDIYIGYLPLAHVLELSAELVCL 339
Query: 340 CAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXX 399
GC IGY S T+ D SSKIKKG+KGDV+ LKPTLMAAVP I DR+
Sbjct: 340 SHGCRIGYSSPQTLADQSSKIKKGSKGDVTTLKPTLMAAVPEIMDRIYKNVMNKVNEMTS 399
Query: 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
+NLF + Y ++ + G L D+++F+ VR +LGG+IR ++CGGAPLSA
Sbjct: 400 FQRNLFILAYNYKMEQISK------GYTTPLCDSLIFRKVRMLLGGKIRILLCGGAPLSA 453
Query: 460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
+QRF+NIC P+GQ YGLTE+ T +E D + GRVG P+ CC IKL++W+EGGY
Sbjct: 454 ATQRFMNICFCCPVGQGYGLTESAGAGTITEVWDYTTGRVGAPLVCCEIKLLNWEEGGYY 513
Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
+DKP PRGEI++GG NVT GY+ N G+T + + +DE G W +TGDIG+ + DGCL+II
Sbjct: 514 NTDKPYPRGEILIGGQNVTVGYYKNEGRTRKDFTIDENGQRWLHTGDIGEFHQDGCLKII 573
Query: 580 --DRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKW 637
DRKKD+VKLQ GEY+SLGKVEAAL + VDNI +A FH+Y + VVP+ K L +
Sbjct: 574 AIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYASSFHSYVIGFVVPNQKELAEL 633
Query: 638 AHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLV 697
A + K E+CN +E EV + L++ A AA L+KFEIP KI+L P+PWTPE GLV
Sbjct: 634 ARKKGFK-GTWEEICNSSEMEKEVLKVLAEAAMAANLEKFEIPVKIRLSPDPWTPETGLV 692
Query: 698 TAALKIKREQLKAKFKDDLQMLY 720
T A K+KR++L A ++ D+ +Y
Sbjct: 693 TDAFKLKRKELTAYYQKDIDRMY 715
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| UNIPROTKB|F1SR72 ACSL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
Identities = 299/652 (45%), Positives = 398/652 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + LG R++L ++ +G+ F+K+ LG+Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMHAKNKFKDKSLLGTREVLNEEDEVQPNGKIFKKVILGNYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y EVF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEEVFVRASNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
A++H LNET+VT +I ++++I DG K S
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DG--KPPAWSEFPKGVI 252
Query: 252 VSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
V + + V+ LG ++ V+ P S P +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 253 VHTMAAVQALGAKASVENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMA 312
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 313 ERIPELGEKDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDA 372
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 373 SMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GCST 426
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
L D +F+ VR++LGG R ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 427 PLCDRFIFRKVRSLLGGNTRLLLCGGAPLSAATQRFMNICFCCPVGQGYGLTESSGAGTI 486
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT
Sbjct: 487 TEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKT 546
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 547 KADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPL 606
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKV 668
+DNI +A+ +H+Y + VVP+ K L + A + + ELCN E NEV + LS+
Sbjct: 607 IDNICAYANSYHSYVIGFVVPNQKELTELARKKGLT-GTWEELCNSREMENEVLKVLSEA 665
Query: 669 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK ++ D++ +Y
Sbjct: 666 AISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717
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| UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
Identities = 290/652 (44%), Positives = 398/652 (61%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
++++P GA T+ LF+ + + LG R++L ++ +G+ F+KL LG+Y+W
Sbjct: 81 VIDIP--GADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLN 138
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y EV R +F SGL G + AI ET EW IA Q CF+ + +VT+Y++LG +
Sbjct: 139 YLEVNRRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGRE 198
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
A++H LNE++ T LI +K++IY +N K G +
Sbjct: 199 AVVHGLNESEATYLITSVELLESKLKTALIDINCVKHIIYVDNKTINKAEYPEG----FE 254
Query: 252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ S VE+LG + V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A
Sbjct: 255 IHSMQSVEELGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 314
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
IP G D Y+ YLPLAHVLEL AE GC IGY S LT++D SSKIKKG+KGD
Sbjct: 315 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 374
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
+VLKPTLMAAVP I DR+ + K LF IGY +L ++ G +
Sbjct: 375 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 428
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
L + I+FK V+A+LGG +R M+ GGAPLS +QRF+N+C P+GQ YGLTETC T
Sbjct: 429 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTV 488
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
+E D + GRVG P+ CC IKL W EGGY DKP PRGEIV+GG N++ GYF N KT
Sbjct: 489 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKT 548
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+E Y VDE G WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 549 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 608
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKV 668
+DNI A +Y ++ VVP+ + L A + ++ + ++CN E+ + + +
Sbjct: 609 IDNICAFAKSDQSYVISFVVPNQQKLTLLAQQKGVEGTWV-DICNNPAMEAEILKEIREA 667
Query: 669 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK + D++ +Y
Sbjct: 668 ANTMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 719
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O95573 | ACSL3_HUMAN | 6, ., 2, ., 1, ., 3 | 0.4458 | 0.9445 | 0.9458 | yes | no |
| Q63151 | ACSL3_RAT | 6, ., 2, ., 1, ., 3 | 0.4469 | 0.9500 | 0.9513 | yes | no |
| Q9CZW4 | ACSL3_MOUSE | 6, ., 2, ., 1, ., 3 | 0.4469 | 0.9500 | 0.9513 | yes | no |
| Q55DR6 | FCSA_DICDI | 6, ., 2, ., 1, ., 3 | 0.3196 | 0.8571 | 0.9265 | yes | no |
| Q9SJD4 | LACS8_ARATH | 6, ., 2, ., 1, ., 3 | 0.7377 | 0.9361 | 0.9375 | yes | no |
| Q5R668 | ACSL3_PONAB | 6, ., 2, ., 1, ., 3 | 0.4469 | 0.9500 | 0.9513 | yes | no |
| P30624 | LCF1_YEAST | 6, ., 2, ., 1, ., 3 | 0.3266 | 0.8821 | 0.9085 | yes | no |
| O60135 | LCF1_SCHPO | 6, ., 2, ., 1, ., 3 | 0.3402 | 0.8793 | 0.9378 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.983 |
| 3rd Layer | 6.2.1.3 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_XIV0485 | long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (679 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pm.C_290034 | acyl-CoA oxidase (EC-1.3.3.6) (664 aa) | • | 0.903 | |||||||
 | grail3.0096010101 | acyl-CoA oxidase (EC-1.3.3.6) (639 aa) | • | 0.901 | |||||||
 | fgenesh4_pg.C_scaffold_3547000001 | annotation not avaliable (326 aa) | • | 0.899 | |||||||
 | fgenesh4_pg.C_LG_XIX000851 | acyl-CoA oxidase (EC-1.3.3.6) (680 aa) | • | 0.899 | |||||||
 | eugene3.00100112 | annotation not avaliable (252 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_VII0199 | acyl-CoA oxidase (EC-1.3.3.6) (689 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_V0077 | acyl-CoA oxidase (EC-1.3.3.6) (691 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_XVI3692 | acyl-CoA oxidase (EC-1.3.3.6) (437 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_VI1706 | acyl-CoA oxidase (EC-1.3.3.6) (436 aa) | • | 0.899 | |||||||
 | gw1.XVI.1394.1 | hypothetical protein (823 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 721 | |||
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-155 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-149 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-139 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-119 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-118 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-115 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-100 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-93 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-70 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 3e-60 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-54 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-46 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 7e-45 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-44 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 9e-44 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 7e-41 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-38 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-36 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-35 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-33 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-32 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 7e-32 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 5e-31 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-30 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 4e-28 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 6e-28 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-27 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-26 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-26 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 4e-25 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 6e-25 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-24 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-24 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-24 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-24 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-23 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-22 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-22 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-22 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 9e-22 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-21 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-21 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-20 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-19 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-19 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-19 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-19 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-18 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 6e-18 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 9e-18 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-17 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-17 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-17 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-16 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-16 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 5e-16 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 5e-16 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-15 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 1e-15 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-15 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-15 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-15 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-15 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 5e-15 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 8e-15 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-14 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-14 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-14 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-14 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 7e-14 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-13 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-13 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-13 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-13 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-13 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 7e-13 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 9e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-12 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-12 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 4e-12 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-12 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-11 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 3e-11 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-11 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-11 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 5e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-11 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 9e-11 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-11 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-10 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-10 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-10 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-10 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-10 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-10 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-10 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-10 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 8e-10 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-09 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-09 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-09 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-09 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-09 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 3e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-09 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-09 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 6e-09 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 7e-09 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-08 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-08 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 2e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-08 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-08 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-08 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 6e-08 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 8e-08 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-07 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-07 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 4e-07 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 5e-07 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 7e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 8e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-07 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 9e-07 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-06 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-06 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-06 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-06 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 6e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 6e-06 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 6e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 7e-06 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 9e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-05 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 1e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-05 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-05 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-05 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 5e-05 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 6e-05 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 7e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 8e-05 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 9e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-04 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 1e-04 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-04 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-04 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 2e-04 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 4e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-04 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 5e-04 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 5e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 8e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 0.001 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.001 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.001 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.001 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.001 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.002 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.002 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 0.003 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.003 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.003 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 0.003 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.004 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 1365 bits (3536), Expect = 0.0
Identities = 520/697 (74%), Positives = 605/697 (86%), Gaps = 1/697 (0%)
Query: 25 VGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTM 84
+GA IV +L+P+LL++++ KK K+RGVPV+VGGEPGYAIRNA+ PELVE PW+GA+T+
Sbjct: 1 MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60
Query: 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
AALFEQSCK + R LG RKL+ ++F T+SDGRKFEKLHLG+YEW TYG+VF+R C+FA
Sbjct: 61 AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120
Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
SGLV GHN + R AI A+T EW IA QGCFRQ+ITVVTIY+SLGE+AL HSLNET+VT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180
Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
T+ICDSKQLKKL +SS L+T+K VIY +++G + DS +SG SNWTVSSFSEVEKLGK
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGS-SNWTVSSFSEVEKLGKE 239
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
+PVDP LPS N +AVIMYTSGSTGLPKGVM+THGNIVAT A + T++P G++DVYLAYL
Sbjct: 240 NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYL 299
Query: 325 PLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384
PLAH+LELAAES+M G AIGYGS LT+TDTS+KIKKGTKGD S LKPTLM AVPAI D
Sbjct: 300 PLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILD 359
Query: 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
RVR+GV KKV+ KGGL K LF+I YKRRLAA+EGSWFGAWGLE++LWDA+VFK +RAVLG
Sbjct: 360 RVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
GRIRFM+ GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG+TFSEWDD SVGRVGPP+P
Sbjct: 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLP 479
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
CCY+KLVSW+EGGY SDKPMPRGEIV+GG +VT GYF N KT EVYKVDERGM WFYT
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCV 624
GDIGQ +PDGCLEIIDRKKDIVKLQHGEY+SLGKVEAAL S YVDNIM+HADPFH+YCV
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCV 599
Query: 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIK 684
ALVVPS +ALEKWA +A I Y + +ELC K EAV EVQQ+LSK AKAA+L+KFEIPAKIK
Sbjct: 600 ALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIK 659
Query: 685 LMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
L+PEPWTPE+GLVTAALK+KREQ++ KFKDDL+ LY+
Sbjct: 660 LLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696
|
Length = 696 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 756 bits (1955), Expect = 0.0
Identities = 260/596 (43%), Positives = 347/596 (58%), Gaps = 58/596 (9%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G YEW +Y EV +RA + SGL G + I AE EW I Q CF QS+ +V +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
Y +LGE+A+ + LNET+++ + CD+
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
V SF E+E+LGK++ V P+ P +A IMYTSG+TG PKGVM+THGNIVA A
Sbjct: 86 ----VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141
Query: 306 AIKTLIPN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
I ++P G +DVY++YLPLAH+ E E++ L G IGY S T +G
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
KGD+ LKPT+ VP + DR+ +G++ KV KGGL + LFN Y +LAA+
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH---- 248
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
G LWD +VFK ++A LGGR+R M+ GGAPLS D+Q F+ + +G P+ Q YGLTETCA
Sbjct: 249 GYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCA 308
Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
G T S+ D + G VGPP+PCC IKLV E GY D P PRGEI + G NV GY+ N
Sbjct: 309 GGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKN 367
Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
P KT+E + D G WF+TGDIG+ PDG L+IIDRKK++ KL GEY++L K+E
Sbjct: 368 PEKTAEAFDED--G--WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYK 423
Query: 605 SSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664
SS VD I ++ D ++ VA+VVP LEKWA E D ELCN + + +
Sbjct: 424 SSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKD 483
Query: 665 LSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
L+++ K L FEI I L PEP+TPE GL+T K+KR QLK ++K ++ +Y
Sbjct: 484 LNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 463 bits (1194), Expect = e-155
Identities = 193/615 (31%), Positives = 301/615 (48%), Gaps = 48/615 (7%)
Query: 116 DGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGC 175
DG LG +E TY E+++R + ASGL++ G R AI A EW IA
Sbjct: 31 DGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAI 90
Query: 176 FRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235
V IYS+ + L + LNE++ + ++++L L + D
Sbjct: 91 LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIID 150
Query: 236 GSEKDSGVSGGISNWTVSS-----FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
V V ++ G + P P + +A I+YTSG+TG P
Sbjct: 151 --LVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAP--PKPDDLATIIYTSGTTGTP 206
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
KGVM+TH N++A A I ++P G D L++LPLAH+ E A E + YG
Sbjct: 207 KGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGV 260
Query: 351 LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN---- 406
+ + D+ ++PT+M VP ++++V +G+++KV + + + LF
Sbjct: 261 TVLFKEDPRT---LLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317
Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
+ YK+ A+ G +W L + D +VF+ +R LGGRIR+ + GGAPLS + F
Sbjct: 318 VAYKKISRALLGGGPLSWLL---VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374
Query: 467 ICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
+G PI + YGLTET A + + D +G VG P+P +K+
Sbjct: 375 S-LGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419
Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GEI+V G NV GY+ NP T+E E G WF TGD+G++ DG L I RKK+++
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEA--FTEDG--WFRTGDLGELDEDGYLVITGRKKELI 475
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAH-EASIKY 645
KL +G+ I+ +E+ L S ++ I + D + VAL+VP ALEKWA +
Sbjct: 476 KLSNGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVIS 534
Query: 646 EDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705
EL + + + ++K K +L FE K L+P+ +TPE G +T LK+KR
Sbjct: 535 ASREELARDPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKR 592
Query: 706 EQLKAKFKDDLQMLY 720
+ ++KD+++ +Y
Sbjct: 593 HVILDRYKDEIEAVY 607
|
Length = 613 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 448 bits (1154), Expect = e-149
Identities = 231/682 (33%), Positives = 339/682 (49%), Gaps = 60/682 (8%)
Query: 60 EPGYAI--------------RNAQIP-ELVEV--PWKGASTMAALFEQSCKSHPQDRFLG 102
E GY++ R+A+ P +LV T+ F + ++ ++LG
Sbjct: 5 EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLG 64
Query: 103 KRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162
R DG +G+Y+W TYGE + SGLV G +
Sbjct: 65 TR--------IRVDGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYF 110
Query: 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS 222
EW I C S V +Y +LG DA+ +N +V + C + L L + S
Sbjct: 111 INRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE 170
Query: 223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282
+ +++ ++ S SG + + ++S++ G+ SP P VA I Y
Sbjct: 171 IPSVRLIVVVGGADEPLPSLPSG--TGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICY 228
Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
TSG+TG PKGV++THGN++A A SDV+++YLPLAH+ E + +ML G
Sbjct: 229 TSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVNQIVMLHYG 287
Query: 343 CAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400
A+G+ G L + D D++ L+PT+ +VP +++R+ +G+ V+E GGL
Sbjct: 288 VAVGFYQGDNLKLMD-----------DLAALRPTIFCSVPRLYNRIYDGITNAVKESGGL 336
Query: 401 TKNLFNIGYK-RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
+ LFN Y ++ A G +WD +VF ++A LGGR+RFM G +PLS
Sbjct: 337 KERLFNAAYNAKKQALENGKNPSP------MWDRLVFNKIKAKLGGRVRFMSSGASPLSP 390
Query: 460 DSQRFINICMGAPIGQAYGLTET-CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
D F+ IC G + + YG+TET C S E D G VG P P C +KLV E Y
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNY 449
Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
+ D+P PRGEI V G + GY+ + +T EV +DE G W +TGDIG P G L+I
Sbjct: 450 TSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV--IDEDG--WLHTGDIGLWLPGGRLKI 505
Query: 579 IDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWA 638
IDRKK+I KL GEYI+ K+E +V ++ D ++ VA+VV + L+ WA
Sbjct: 506 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWA 565
Query: 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698
IKYEDL +LCN V + V + A+L FE + L+PEP+T E GL+T
Sbjct: 566 ASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLT 625
Query: 699 AALKIKREQLKAKFKDDLQMLY 720
K+KR Q KA F + +Y
Sbjct: 626 PTFKVKRPQAKAYFAKAISDMY 647
|
Length = 651 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-139
Identities = 217/663 (32%), Positives = 342/663 (51%), Gaps = 50/663 (7%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRK--FEKLHLGDYEWQTY 133
W E+ CK R L R + + K+ V +DG++ E H + + TY
Sbjct: 65 WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITY 124
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
E+++R +F GL G + AI ET EW + G + QS+ T+Y++LGEDA
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKN--VIYFENDGSEKDSGVSGGISNWT 251
L ++L ET+ ++C+ K + L + S + N +IY ++ + D+
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKS-GGMPNTTIIYLDSLPASVDTE------GCR 237
Query: 252 VSSFSEVEKLGKR--SPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ ++++V G S ++P N +A+IMYTSG+TG PKGVM THG++ A A++
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297
Query: 309 ----TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
LI P + Y +YLPLAH++E +I L G IG+GS T+TDT ++
Sbjct: 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----P 353
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
GD++ +P + VP IFD +++ V K+ G L + +F+ Y+ RL A++
Sbjct: 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------ 407
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
G + W+ VF + RAVLGGR+R M+ GG PLSA +Q F+N+ G + Q +GLTET
Sbjct: 408 GKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
D VG + +KL+ +E YK +D P PRGEI++ G + GY+
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQ 524
Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
T EV +DE G WF+TGD+G + +G L II R K + K GEYI+L +EA
Sbjct: 525 EELTREV--LDEDG--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL-- 578
Query: 605 SSDYVDN-------IMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEA 657
Y N + + P +Y ALV+ +A E I+ E + E
Sbjct: 579 ---YGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGE-YPAILKDPEF 634
Query: 658 VNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 717
+ ++L + A+AA FEI ++++ + WTPE G++TAA+K+KR + ++ D ++
Sbjct: 635 QKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIK 694
Query: 718 MLY 720
L+
Sbjct: 695 ELF 697
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-119
Identities = 165/581 (28%), Positives = 260/581 (44%), Gaps = 129/581 (22%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G ++ T+ E+ +R A+GL+ G R AILAE EW IA V I
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
Y + + +V ++ DS A V++ E+ +
Sbjct: 61 YPTSSPE---------EVAYILNDSG------AR---------VVFVEDKPDD------- 89
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
+A ++YTSG+TG PKGVM+TH N++A AA
Sbjct: 90 -------------------------------LATLIYTSGTTGNPKGVMLTHRNLLAQAA 118
Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTK 365
A+ +IP D L++LPLAHV E L + G+ + ++ + +
Sbjct: 119 ALLEVIP-LSPGDRVLSFLPLAHVFEQ-----RLGEYLPLSSGARVNFAESPETLLE--- 169
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
D+ ++PT+ AVP +++++ G+ KV G L + LF W
Sbjct: 170 -DLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLF-----------------RW- 210
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
A+ GGR+RF + GGAPL + F +G PI + YGLTET
Sbjct: 211 ---------------ALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGV 254
Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
+T + D +G VG P+P +++ GEI+V G NV GY+ NP
Sbjct: 255 ATVNRPGDIRIGTVGKPLPGVEVRIA--------------EDGEILVRGPNVMKGYYKNP 300
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T+E +DE G W +TGDIG++ DG L I DRKKD++ G+ I+ +E AL +
Sbjct: 301 EATAEA--LDEDG--WLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKA 356
Query: 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665
S Y+ ++ D Y AL+V +ALEKWA + + + ++L E +++
Sbjct: 357 SPYISQAVVVGDD-RPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKE- 414
Query: 666 SKVAKA-AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705
V +A A+L + E K L+P+ ++ E G +T +K++R
Sbjct: 415 --VEEANARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRR 453
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 369 bits (949), Expect = e-118
Identities = 214/670 (31%), Positives = 332/670 (49%), Gaps = 72/670 (10%)
Query: 69 QIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDY 128
+P ++ PW+ F + K +P ++ LG+R++ +D + +G Y
Sbjct: 37 DLPADIDSPWQ-------FFSDAVKKYPNNQMLGRRQV--------TDSK------VGPY 75
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
W TY EV+D A S + + G N R I C EW IA + C Q IT V +Y +
Sbjct: 76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAV----SSSLKTIKNVIYFENDGSEKDSGVS 244
LG +A+ +N +V+ ++ + + SS+LKTI V + + +K+
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTI--VSFGDVSSEQKEEAEE 193
Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQ--NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
G+S ++ FS + L D LP + + IMYTSG+TG PKGV++T+ I+A
Sbjct: 194 LGVSCFSWEEFSLMGSL------DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA 247
Query: 303 TAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDT 356
+ L+ R D Y +YLPLAHV + E+ + G +IG+ G + +
Sbjct: 248 EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME- 306
Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
DV LKPT+ VP ++DR+ G+++K+ G L K LF+ Y +L +
Sbjct: 307 ----------DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356
Query: 417 EGSWFGAWGLERM----LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472
GL++ D +VF ++ LGGR+R ++ G APL + F+ + +
Sbjct: 357 RK------GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSV 410
Query: 473 IGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKT-SDKPMPRGEI 530
+ Q YGLTE+C G S + VG VG P+ +L S E GY SD +PRGEI
Sbjct: 411 LSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD--VPRGEI 468
Query: 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590
+ G + +GY T EV +D WF+TGDIG+ P+G ++IIDRKK+I KL
Sbjct: 469 CLRGNTLFSGYHKRQDLTEEVL-IDG----WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQ 523
Query: 591 GEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSE 650
GEY+++ +E + +I ++ + F ++ VA+VVP +ALE WA + K D
Sbjct: 524 GEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWA-ANNNKTGDFKS 582
Query: 651 LCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710
LC +A + L+ K +L FE+ I L P P+ E L+T K+KR QL
Sbjct: 583 LCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLK 642
Query: 711 KFKDDLQMLY 720
+KD + LY
Sbjct: 643 YYKDCIDQLY 652
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-115
Identities = 204/647 (31%), Positives = 328/647 (50%), Gaps = 52/647 (8%)
Query: 87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASG 146
+F +S + +P ++ LG R+++ DG+ +G Y W+TY EV++ S
Sbjct: 47 IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVYEEVLQIGSA 92
Query: 147 LVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206
L G +R I C +W +A + C S+ V +Y +LG A+ + ++ ++ +
Sbjct: 93 LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152
Query: 207 ICDSKQLKK-LSAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSSFSEVEKLGKR 264
K++K+ L S K +K ++ F + E D G+ + S+ + +GK
Sbjct: 153 FVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY---SWIDFLHMGKE 209
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----PGRSDVY 320
+P + + P + IMYTSG++G PKGV++TH + + + DVY
Sbjct: 210 NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVY 269
Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378
L++LPLAH+L+ E G ++GY G + D D+ LKPTL+A
Sbjct: 270 LSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------DLMELKPTLLAG 318
Query: 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM---LWDAIV 435
VP +F+R+ EG+ K ++E + +FN YK +LA W + + D +
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA-----WMNRGYSHKKASPMADFLA 373
Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
F+ V+A LGGR+R +I GGAPLS + + F+ + A + Q YGLTET +T D+
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433
Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
+G VG P ++L E GY +P PRGEI V G + +GY+ NP T EV K
Sbjct: 434 MLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMKD 492
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
WF+TGDIG++ P+G L+IIDRKK+++KL GEY++L +E + V++I +
Sbjct: 493 G-----WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWV 547
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
+ D F + VA+VVP+ + KWA + ELC+ E + L A+ KL
Sbjct: 548 YGDSFKSMLVAVVVPNEENTNKWAKDNGFT-GSFEELCSLPELKEHILSELKSTAEKNKL 606
Query: 675 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
FE + L +P+ E LVTA LK +R L ++ ++ +Y+
Sbjct: 607 RGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-100
Identities = 208/660 (31%), Positives = 333/660 (50%), Gaps = 58/660 (8%)
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
P +G + +F S + +P + LG+R++ DG+ G Y WQTY EV
Sbjct: 40 PIEGMDSCWDVFRMSVEKYPNNPMLGRREI--------VDGKP------GKYVWQTYQEV 85
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
+D + L + G + + I EW I+ + C + V +Y +LG A+
Sbjct: 86 YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEF 145
Query: 197 SLNETQVTTLICDSKQLKKL-SAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSS 254
++ ++V+ + + K++ +L +S + +K V+ F E K+ + G+ + +
Sbjct: 146 IISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGL---VIYA 202
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
+ E KLG+ D + ++ + IMYTSG+TG PKGVMI++ +IV A + L+ +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 315 GRS----DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
+ DVYL+YLPLAH+ + E + G AIG+ D I+ D+
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG----DVKLLIE-----DLGE 313
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY-------KRRLAAVEGSWFGA 423
LKPT+ AVP + DRV G+ KK+ + G L K +F+ + K+ + VE S
Sbjct: 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPL-- 371
Query: 424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483
D +VF V+ LGG +R ++ G APL++ + F+ + + Q YGLTE+C
Sbjct: 372 -------CDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 484 AGSTFSEWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541
AG TF D +G VGPPVP I+L S E Y PRGEI + G + +GY
Sbjct: 425 AG-TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGY 482
Query: 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 601
+ T EV +D W +TGD+G+ P+G ++IIDRKK+I KL GEY+++ +E
Sbjct: 483 YKREDLTKEVL-IDG----WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIEN 537
Query: 602 ALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEV 661
VD++ ++ + F ++ VA+ P+ + LE+WA E + D + LC +A +
Sbjct: 538 IYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVS-GDYNALCQNEKAKEFI 596
Query: 662 QQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
L K+AK K+ FEI I L P P+ E L+T K KR QL ++ + +Y+
Sbjct: 597 LGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK 656
|
Length = 666 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 2e-93
Identities = 129/487 (26%), Positives = 189/487 (38%), Gaps = 79/487 (16%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +RA A+ L G R AIL EW +A + V + SL
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L +++ LI D + L KL V L + +I +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV--------------GDDGE 106
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ E L S P+ P + +A I+YTSG+TG PKGVM+TH N++A AA +
Sbjct: 107 GLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAER 166
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
D L LPL + L AG TL + + +
Sbjct: 167 FG-LTPGDRVLLLLPLHFDGSVWEIFGPLLAGG------TLVLVPKFTLDPARLLDLIEK 219
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
K T++ VP + + L+
Sbjct: 220 YKVTVLYGVPTLLRLL---------------------------------------LKAPE 240
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS 489
S+R V + GG PL + +R G P+ YG TET +T +
Sbjct: 241 EKKYDLSSLRLV--------LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292
Query: 490 EWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
DP G +G P+P +K++ DE G P GE+ + G V GY N+P
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVL--DEEG--EPVPPGEVGELCIRGPGVARGYLNDPEL 348
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T+E + E G + TGD+G+ DG LEI+ RK D VK+ GE I G++EA L+
Sbjct: 349 TAERF--VEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI-RGERIEPGEIEAVLLEHP 405
Query: 608 YVDNIMI 614
V +
Sbjct: 406 GVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 3e-70
Identities = 160/644 (24%), Positives = 243/644 (37%), Gaps = 132/644 (20%)
Query: 82 STMAALFEQSCKSHPQD---RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFD 138
T+A+L E++ + +P FLG+ L TY E+
Sbjct: 11 LTLASLLERAARRNPDRPALIFLGRGGRL------------------------TYRELDR 46
Query: 139 RACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSL 198
RA A+ L G R AIL E+ IAF R V + L L + L
Sbjct: 47 RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYIL 106
Query: 199 NETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEV 258
N+ LI ++ L AV+ +L + V+ + G + + +
Sbjct: 107 NDAGAKVLITSAEFAALLEAVAEALPVVLVVL------------LVGDADDRLPITLEAL 154
Query: 259 EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317
G D + +A ++YTSG+TGLPKGV++TH N++A AA I L
Sbjct: 155 AAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD 214
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
DV L++LPL H+ L I+ +G G TL + + + K T+++
Sbjct: 215 DVVLSWLPLFHIFGL----IVGLLAPLLG-GGTLVLLSPEPFDPEEVLWLIEKYKVTVLS 269
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
VP R L +
Sbjct: 270 GVPTFL---------------------------RELLD--------------NPEKDDDD 288
Query: 438 SVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
L +R ++ GGAPL + +RF I + YGLTET T + DD
Sbjct: 289 -----LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343
Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
G VG P+P +++V +GG P GEI V G NV GY+N P T+E +
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGG---EVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE 399
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
D W TGD+G V DG L I+ R KD++ GE I ++EA L V
Sbjct: 400 D----GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVA---- 450
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
+ VP E+W L + E++ L K +L
Sbjct: 451 -------EAAVVGVPD----ERWGERVVAVVV-LKPGGDAELTAEELRAFLRK-----RL 493
Query: 675 DKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKAKFKDDLQ 717
+++P + + E P TA+ KI R L+ +++ + +
Sbjct: 494 ALYKVPRIVVFVDELP-------RTASGKIDRRALREEYRAEPR 530
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 3e-60
Identities = 169/642 (26%), Positives = 280/642 (43%), Gaps = 96/642 (14%)
Query: 126 GDYEWQ--TYGEVFDRACSFASGLVNFG----HNVDTRAAILAETCVEWFIAFQGCFRQS 179
G W TY + ++ A + G H+V IL EWFIA G
Sbjct: 2 GKDGWHTLTYKQYYEACRQAAKAFLKLGLERFHSV----GILGFNSPEWFIAAVGAIFAG 57
Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDS-KQLKKLSAVSSSLKTIKNVIYFENDGSE 238
V IY++ +A + ++ L+ D+ KQL+K+ A+ L +K +I + E
Sbjct: 58 GIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKE 117
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQ--NGVAVIMYTSGSTGLPKGV 293
K+ + S+ E +LG+ P +D + SQ N ++YTSG+TG+PKGV
Sbjct: 118 KEPNLY---------SWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGV 168
Query: 294 MITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
M++H NI TA A K + + ++YLPL+H+ AA+ + + I G +
Sbjct: 169 MLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLP--ISVGGCVY 223
Query: 353 MTDTSSKIKKGTKGDVSVL---KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF---- 405
+ KGT V L +PT VP ++++++E + + GL + +
Sbjct: 224 FAQPDA--LKGTL--VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAK 279
Query: 406 NIGYKRRLAAVEGSW--FGAWGLERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQ 462
+G + L + G + L + L VFK VR LG R + G AP+S ++
Sbjct: 280 GVGLETNLKLMGGESPPPMCFRLAKKL----VFKKVRKALGLDRCQKFFTGAAPISRETL 335
Query: 463 RF---INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
F +NI PI + YG++ET T S + + G +P C K+ + D G
Sbjct: 336 EFFLSLNI----PIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI- 390
Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
GEI + G +V GY N KT E +DE G W ++GD+G + DG L I
Sbjct: 391 --------GEICIWGRHVFMGYLNMEEKTEE--AIDEDG--WLHSGDLGFLDDDGFLYIT 438
Query: 580 DRKKDIVKLQHGEYISLGKVEAALISS-DYVDNIMIHADPFHNYCVALV------VPSHK 632
R K+++ GE + +E A+ + N M+ D + L + +
Sbjct: 439 GRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPETGE 498
Query: 633 ALEKWAHEA-------SIKYEDLSELCN-KAEAVNE-VQQALSKVAK-----AAKLDKFE 678
L+ EA +SE+ K V E +++ + +V K A K+ K+
Sbjct: 499 PLDNLTEEAIEFCRLLGSHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWV 558
Query: 679 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720
I + + ++ G + +K+KR + K+KD++ LY
Sbjct: 559 I------LEKDFSVPGGELGPTMKLKRPVVAKKYKDEIDKLY 594
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 1e-54
Identities = 153/589 (25%), Positives = 255/589 (43%), Gaps = 100/589 (16%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ +V D+A A+ L + G R AIL++ C EW IA + V +Y +L
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 192 DALIHSLNETQVTTLIC---DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
+ + + L + L D K + V L TI I F +
Sbjct: 68 ETIRYVLEHSDAKALFVGKLDDWDAMK-AGVPEGLPTI---ILFPYSTLKDHY------- 116
Query: 249 NWTVSSFSEVEKLGKRSPVDPS-LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
+ ++ L P+ LP +A I+YTSG+TG PKGVM++ G A
Sbjct: 117 -----KWDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKG 366
+I +D L+YLPLAH+ E E L +G + + +L DT +
Sbjct: 170 IEII-GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAA------- 218
Query: 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
D+ +PT+ +VP ++ + ++G++ K+ + L I
Sbjct: 219 DLQRARPTVFFSVPRLWTKFQQGILAKLPPE--KLNLLLKI------------------- 257
Query: 427 ERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
+ ++V K + LG + R G AP+ + +G PI + YG+TE A
Sbjct: 258 --PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAY 314
Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
ST + D +G VG P+P +K+ E G EI++ + +GY+ +P
Sbjct: 315 STLNYPGDRRIGTVGKPIPGVELKI---SEDG-----------EILIRSPGLMSGYYKDP 360
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
KT+E + D G W +TGD G++ DG L+I R K++ K G+Y++ +E L +
Sbjct: 361 EKTAEAFTED--G--WLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSA 416
Query: 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665
+ +V+ + + VALVV LSE + E EV+++L
Sbjct: 417 NPHVEQVCVVGSGLPQ-PVALVV-------------------LSEAADPLER-EEVEESL 455
Query: 666 SKVAKA--AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712
+ ++L+ E + + ++ E WT E GL+T LKIKR ++ +
Sbjct: 456 QQTLAKVNSELESHERLSALVVVKEAWTVENGLLTPTLKIKRNVVEKHY 504
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 5e-46
Identities = 128/514 (24%), Positives = 192/514 (37%), Gaps = 152/514 (29%)
Query: 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
A L E++ + P + +T GRK TY E+ + + FA
Sbjct: 2 ADLLERAARRFP-----------DRPALT-FFGRKL-----------TYAELDELSDRFA 38
Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
+ L G R A++ C ++ IA+ G + VV + L H LN++
Sbjct: 39 AYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAK 98
Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
LI SF + G
Sbjct: 99 VLIV-------------------------------------------AISFEDALASGAP 115
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS-DVYLAY 323
P+ P S + +AV+ YT G+TG+PKG M+TH N+VA I + + D +L
Sbjct: 116 LPL-PVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174
Query: 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLK------PTLMA 377
LPL H+ L + + G+T + ++VLK T+
Sbjct: 175 LPLFHIFGL-----TVNMLLGLRLGATNVLVPNFR--------PINVLKEIKRYRFTIFP 221
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
VP +++ L N ++ F
Sbjct: 222 GVPTLYNA------------------LLN----------------HPEFKKYD-----FS 242
Query: 438 SVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
S+R I GGAPL + ++RF GAP+ + YGLTET +T + D
Sbjct: 243 SLRLC--------ISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGERK 293
Query: 496 VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY 552
G +G P+P +K+V DEG +P GE+VV G V GY+N P +T+EV
Sbjct: 294 PGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346
Query: 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W TGDIG + DG I+DRKKD++
Sbjct: 347 TDG-----WLRTGDIGYMDEDGYFYIVDRKKDMI 375
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 7e-45
Identities = 109/419 (26%), Positives = 172/419 (41%), Gaps = 90/419 (21%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I+YTSG+TG PKGV+++H N++A A A+ I DV L+ LPL HV+
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGDVLLSVLPLFHVVGG---- 56
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
A+ G T+ + + + + + T++ VP ++D + K E
Sbjct: 57 -GSGLLGALLAGGTVVLYEGFPFPLSFLE-LIEQYRVTVLFGVPTLYDALA-----KAAE 109
Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
G L+ +R +I GG P
Sbjct: 110 DRG-----------YDLS-------------------------------SLRLLISGGEP 127
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDE 515
LS + GAPI + YGLTET ++ + + G VG PVP +++V +E
Sbjct: 128 LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVD-EE 186
Query: 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGC 575
G + GE+VV G V GY+NNP +T+ E G W+ TGD+G + +G
Sbjct: 187 GKPLPPGEV---GELVVRGPWVMKGYWNNPPETT--AAATEDG--WYRTGDLGYLDEEGY 239
Query: 576 LEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALE 635
L I R KD++K+ GE + +VE+ L+ V + VP E
Sbjct: 240 LYITGRSKDLIKVG-GENVYPAEVESVLLQHPAVA-----------EAAVVGVPDEDRGE 287
Query: 636 KWAHEASIKYEDLSELCNKAEAV-NEVQQALSKVAKAAKLDKFEIPAKIKLMPE-PWTP 692
+ L A+A+ E++ L + L +++P I+ + E P T
Sbjct: 288 R-IVAF-------VVLRPGADALAEELKAHLRER-----LAPYKVPRVIEFVDELPKTA 333
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 4e-44
Identities = 119/465 (25%), Positives = 186/465 (40%), Gaps = 94/465 (20%)
Query: 132 TYGEVFDRACSFASGLVNFG---HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
TY E+ A+GL G +V +L+ +E+ + F V T
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDV---VLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
+ + ++ I S+ +KL++++ + V+ DS G +
Sbjct: 91 YTPAEIAKQVKDSGAKLAITTSELAEKLASLAL-----EPVVLL-------DSADDGSAA 138
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ E E V Q+ VA + Y+SG+TG KGVM+TH N++A A +
Sbjct: 139 IDDLLFADEPEP---PVVVIK----QDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLV 191
Query: 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTK 365
PN R DV L LP+ H+ L +++L A +G + + M D +
Sbjct: 192 AGEGPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAA--- 244
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
+ K T + VP I V+ L K+ I K L+++
Sbjct: 245 --IEKYKVTHLPVVPPI-------VL-------ALVKH--PIVDKYDLSSL--------- 277
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCA 484
+ + G APL + ++ F G +GQ YG+TE+
Sbjct: 278 ----------------------KQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315
Query: 485 GST--FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
+T DP G VG VP K+V + G S P GE+ V G V GY
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
NNP T+E +D+ G W +TGD+G DG L I+DR K+++K
Sbjct: 373 NNPEATAET--IDKDG--WLHTGDLGYFDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 164 bits (419), Expect = 9e-44
Identities = 119/496 (23%), Positives = 187/496 (37%), Gaps = 113/496 (22%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R A+ L G R A+ E+ A+ + + I L
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + + LN+ + ++ DS+ + L+A+ L T++ VI E DG
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIV-EGDGPAAPLAP-------E 144
Query: 252 VSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
V + E+ L S +N A ++YTSG+TG PKGV+++H N+ + A+
Sbjct: 145 VGEYEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW 202
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTDTSSKIKKGT 364
+ R DVYL +P+ HV + L AG + L + +T
Sbjct: 203 L-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIET-------- 253
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
+ T AVP I+ + ++K R F +
Sbjct: 254 ------ERVTFFFAVPTIW----QMLLK----------------APR----AYFVDFSSL 283
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGL 479
R +I GGA L ++F G + Q YG+
Sbjct: 284 -----------------------RLVIYGGAALPPALLREFKEKF-----GIDLVQGYGM 315
Query: 480 TETCAGSTFS--EWDDPSV----GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----G 528
TET + E P G P+P ++V D+ G +P G
Sbjct: 316 TETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIV--DDDG-----DELPPDGGEVG 368
Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
EI+V G + GY+N P T+E W +TGD+G + DG L I DR KD++
Sbjct: 369 EIIVRGPWLMQGYWNRPEATAETIDGG-----WLHTGDVGYIDEDGYLYITDRIKDVII- 422
Query: 589 QHGEYISLGKVEAALI 604
GE I ++E AL
Sbjct: 423 SGGENIYPRELEDALY 438
|
Length = 521 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 7e-41
Identities = 117/458 (25%), Positives = 179/458 (39%), Gaps = 139/458 (30%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I YTSG+TG PKG M+TH N++ +I D L +PL HV L
Sbjct: 4 PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-ARRLGLTEGDRTLVPVPLFHVFGLVL-G 61
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV-SVL------KPTLMAAVPAIFDRVREG 389
++ + G+TL + + K D + L + T + VP +F +
Sbjct: 62 VLAS----LTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIAL--- 105
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
LE +D S+R
Sbjct: 106 ------------------------------------LEHPDFDKFDLSSLR--------T 121
Query: 450 MICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPC 505
I GGAP+ + R I A I YG+TET T + DDP G VG P+P
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181
Query: 506 CYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+K+V +GG +P GEI V G++V GY+N+P T+E D G W
Sbjct: 182 VEVKIVD-PDGG------EVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDAD--G--WL 230
Query: 563 YTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNY 622
+TGD+G + DG L I+ R KD++ + GE I ++E AL++ V
Sbjct: 231 HTGDLGYMDEDGYLRIVGRIKDMII-RGGENIYPAEIEEALLTHPAVAE----------- 278
Query: 623 CVALV-VPSHKALEKW----------AHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671
A+V VP E+ A++ E+L C
Sbjct: 279 -AAVVGVPD----ERLGEVVAAFVVLKPGATLTEEELIAFC------------------R 315
Query: 672 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709
+L +F++P ++ + E TA+ KI++ +L+
Sbjct: 316 GRLARFKVPRYVRFVDELP------RTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-38
Identities = 117/492 (23%), Positives = 178/492 (36%), Gaps = 103/492 (20%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
I+ + V +A V + + GE+ L + + + T+I L+KL
Sbjct: 33 NIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKL 92
Query: 217 SAV-SSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV------SSFSEVEKLGKRSPVDP 269
L ++Y E+ + IS + + P
Sbjct: 93 KLEGLVVLLEGVRIVYLED--------LRAKISKADKLKAFLAAKLPPALLRLFLAGAKP 144
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
P AVI++TSGS GLPKGV+++H N++A I +I DV L LPL H
Sbjct: 145 DDP-----AVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-LNTEDVLLGALPLFHA 198
Query: 330 LELAAESIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388
L ++ L G + Y +++ + K T++ P
Sbjct: 199 FGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL-------IRDYKATILCGTPTFLR---- 247
Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
GY R F S+R V
Sbjct: 248 -------------------GYARN------------------AHPEDFSSLRLV------ 264
Query: 449 FMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507
+ G L + F G I + YG TE + + G VG P+P
Sbjct: 265 --VAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 508 IKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
+++VS + + + +P GE ++V G NV +GY NN KTSEV + + W+ T
Sbjct: 322 VRIVSPE------THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDG---WYDT 372
Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCV 624
GDIG++ DG L I+ R K K+ GE +SL VE L P +
Sbjct: 373 GDIGKIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEELL----------SEILPEDSLHA 421
Query: 625 ALVVPSHKALEK 636
A+ VP K EK
Sbjct: 422 AVEVPDEKKGEK 433
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-36
Identities = 103/350 (29%), Positives = 146/350 (41%), Gaps = 106/350 (30%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I+YTSG+TG PKGVM+TH N++A A + DVYL PL H +
Sbjct: 3 PALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHA------A 55
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD-VSVL------KPTLMAAVPAIFDRVREG 389
L A+ G T+ + K D +VL + T VP +F
Sbjct: 56 GGLFLLPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMF------ 100
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
+RL + + S+R
Sbjct: 101 ---------------------QRLLRLPD------------FARYDLSSLR--------L 119
Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVP 504
+I G AP+ A+ +R + G Q YG+TET +T +D SVGR PVP
Sbjct: 120 IIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR---PVP 176
Query: 505 CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+++V DE G + +P GEIVV G V AGY+N P T+E + G W
Sbjct: 177 GVEVRIV--DEDG-----RELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR---DG--W 224
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG------KVEAALIS 605
+TGD+G + DG L I+DRKKD++ IS G +VE L++
Sbjct: 225 LHTGDLGYLDEDGYLYIVDRKKDMI-------ISGGENIYPAEVENVLLA 267
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-35
Identities = 159/704 (22%), Positives = 277/704 (39%), Gaps = 172/704 (24%)
Query: 132 TYGEVFDRACSFASGLVNF-GHNVDTRA-------------AILAETCVEWFIAFQGCFR 177
TYG F + SF+ L + G + + + + W +A C
Sbjct: 93 TYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACML 152
Query: 178 QSITVVTIYSSLGEDALIHSLNETQ----------VTTLICDSKQ---LKKLSAVSSSLK 224
+T + ++S D ++ LNET+ V L+ + LKKL + + +K
Sbjct: 153 SGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIK 212
Query: 225 TIKNVIYFE--NDGSE-KDSGVSGGISNWTVSSFS-------------EVEKL------- 261
+ + I E N+GS ++G + S + EKL
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK 272
Query: 262 ------------------GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
K + + + I+YTSG++G PKGVM+++ N+
Sbjct: 273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNL--- 329
Query: 304 AAAIKTLIP----------NPGRSDVYLAYLPLAHVLE--LAAESIMLCAGCAIGYGSTL 351
T++P NP +L+YLP++H+ E +A S ML G T+
Sbjct: 330 ---YNTVVPLCKHSIFKKYNP---KTHLSYLPISHIYERVIAYLSFML--------GGTI 375
Query: 352 TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE----KGGLTKNLFNI 407
+ SK D+ K ++A VP +F+R+ ++ ++ K L K + ++
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432
Query: 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467
R+ + F + LE + + ++ + + ++ GG LS +++
Sbjct: 433 ---RK--SNNNGGFSKF-LEGITH---ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSV 483
Query: 468 CMGAPIGQAYGLTETCAGSTF----SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK 523
+ Q YGLTET G F + + S+G GP P K+ +W+ YK +D
Sbjct: 484 LLNVNYYQGYGLTET-TGPIFVQHADDNNTESIG--GPISPNTKYKVRTWET--YKATDT 538
Query: 524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
P+GE+++ ++ +GYF +T + D +F TGDI Q+ +G L +DR K
Sbjct: 539 L-PKGELLIKSDSIFSGYFLEKEQTKNAFTEDG----YFKTGDIVQINKNGSLTFLDRSK 593
Query: 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVA---------LVVPS---- 630
+VKL GEYI E ++++ Y F N+CV L + S
Sbjct: 594 GLVKLSQGEYI-----ETDMLNNLYSQ------ISFINFCVVYGDDSMDGPLAIISVDKY 642
Query: 631 --HKALEK--WAHEASIKYEDLS-----ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA 681
K L+ I ++ E N V+ V+ + +V K L+++ I
Sbjct: 643 LLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIIN 702
Query: 682 KIKLMPEPWTPEAGLVTAALKIKR-----------EQLKAKFKD 714
I L + W L T K+KR +Q+K +K+
Sbjct: 703 DIYLTSKVWDTNNYL-TPTFKVKRFYVFKDYAFFIDQVKKIYKN 745
|
Length = 746 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 5e-33
Identities = 109/419 (26%), Positives = 168/419 (40%), Gaps = 96/419 (22%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I+YTSG+TG PKGV++THGN+ A A A+ SDV L LPL HV
Sbjct: 90 PALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLHHV-----HG 143
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP-TLMAAVPAIFDRVREGVVKKVE 395
+ C + G+++ + + + +L T+ VP I
Sbjct: 144 LFNALHCPLWAGASVEFL---PRFDPQERDALRLLPRITVFMGVPTI------------- 187
Query: 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
Y R L E F A +R + G A
Sbjct: 188 -------------YTRLLEHYE------------------FDDAAAAAARNLRLFVSGSA 216
Query: 456 PLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
L +R+ G + + YG+TET + + G VG P+P +++V +
Sbjct: 217 ALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVD-E 274
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+GG + + GEI V G NV + Y+N P T+E + E G WF TGD+G V DG
Sbjct: 275 DGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAF--TEDG--WFKTGDVGVVDEDG 328
Query: 575 CLEIIDRKK-DIVKLQHGEY-ISLGKVEAALISSDYVDNIMIHADPFHNY---CVALVVP 629
I+ RK DI+K G Y +S ++E AL+ V + + P ++ VA+VVP
Sbjct: 329 YYRILGRKSDDIIK--SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVP 386
Query: 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE 688
A + E++ KL ++IP ++ ++ E
Sbjct: 387 E---------------------AGAALTLAELRAWA-----REKLAPYKIPKRVIVVDE 419
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 5e-32
Identities = 106/497 (21%), Positives = 174/497 (35%), Gaps = 108/497 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E+ +RA A L G R A+L E E +A + V + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
+ L L + L+ DS + + +G+ +
Sbjct: 61 AERLAFILEDAGARLLLTDS------------------------ALASRLAGLVLPVILL 96
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ ++ P D + + +A ++YTSGSTG PKGV++TH ++V A +
Sbjct: 97 DPLELAALDDAPAPPPPD-APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155
Query: 311 IPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
D L + L+ V E+ L AG + + + +
Sbjct: 156 YGLDPD-DRVLQFASLSFDASVEEIFGA---LLAG-----ATLVVPPEDEERDDAALLAA 206
Query: 368 V-SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
+ + T++ P++ +
Sbjct: 207 LIAEHPVTVLNLTPSLLALL---------------------------------------- 226
Query: 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS 486
S+R V+ + G A A R+ GA + YG TET S
Sbjct: 227 --AAALPPALASLRLVI-------LGGEALTPALVDRWRARGPGARLINLYGPTETTVWS 277
Query: 487 TFSEWDDPSVGR-----VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVT 538
T + D R +G P+ + ++ D+ +P+P GE+ +GG V
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVL--DDDL-----RPVPVGVVGELYIGGPGVA 330
Query: 539 AGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
GY N P T+E + D G + TGD+ + PDG LE + R D VK+ G I
Sbjct: 331 RGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRI 389
Query: 595 SLGKVEAALISSDYVDN 611
LG++EAAL+ V
Sbjct: 390 ELGEIEAALLRHPGVRE 406
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-32
Identities = 111/443 (25%), Positives = 172/443 (38%), Gaps = 123/443 (27%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I++TSGSTG PK V+ T GN +A+A + D +L LPL HV LA
Sbjct: 79 PATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVSGLA--- 134
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
I++ + G L + D + + + T ++ VP
Sbjct: 135 IVM--RSLL-AGGALVLPD-KFDAEAIAE-ALENHGVTHISLVPTQ-------------- 175
Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML--WDAIVFKSVRAVLGGRIRFMICGG 454
L+R+L A S+RAVL GG
Sbjct: 176 -----------------------------LQRLLESLGARWLSSLRAVL--------LGG 198
Query: 455 APLSADSQRFINIC--MGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPVPCCYIKL 510
AP+ + G P+ YG+TET + + DD +G VG P+P +++
Sbjct: 199 APIPPS---LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRI 255
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V+ + GEI+V G ++ GY G T +DE G WF+TGD+G +
Sbjct: 256 VNPQD------------GEILVRGPSLFLGYLPQGGLTPP---LDEDG--WFHTGDLGYL 298
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI--HADP-FHNYCVALV 627
+G L ++ R+ D++ + GE I ++EA L+ V+ + D + VA V
Sbjct: 299 DAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFV 357
Query: 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMP 687
VP+ + V E+Q L A KL K++ P + +P
Sbjct: 358 VPNDDPVS----------------------VEELQAFL-----ADKLAKYKRPKRWYPLP 390
Query: 688 EPWTPEAGLVTAALKIKREQLKA 710
E A+ KI R L+
Sbjct: 391 E------LPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-31
Identities = 120/515 (23%), Positives = 198/515 (38%), Gaps = 113/515 (21%)
Query: 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
+ G TY + + R A+ L + G R A LA +
Sbjct: 17 RTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAV 76
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
+ T+ L + + + +N + + D L L A++ L T+K V+ +++ + S
Sbjct: 77 LHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETS 136
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
V ++ E+ L + SP P L +N A + YTSG+TG PKGV+ +H +
Sbjct: 137 LP-------NVYAYEEL--LEEESPEYEWPELD-ENTAAGLCYTSGTTGNPKGVVYSHRS 186
Query: 300 IV--ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
+V A+A+ + SD L +P+ HV + Y +T+
Sbjct: 187 LVLHTLASALPDSL-GLSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAK-- 232
Query: 358 SKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYK 410
+ G D + L K T+ A VP I+ GL L
Sbjct: 233 -LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW--------------LGLLNYL------ 271
Query: 411 RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470
++ L R ++ G A + ++ G
Sbjct: 272 --------------------------EANGKDLSSLRRVVVGGSALPRSLIEKLEE--RG 303
Query: 471 APIGQAYGLTETCAGSTFS-------EWDDPSVGRV----GPPVPCCYIKLVSWDEGGYK 519
+ A+G+TET T S + + + G PVP +++V D+ G
Sbjct: 304 VEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV--DDEG-- 359
Query: 520 TSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+P GE+VV G VT Y+ +P KT E+ G WF TGD+ + DG
Sbjct: 360 ---NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL---TRDG--WFRTGDVAVIDEDG 411
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
++I DR KD++K GE+IS ++E AL++ V
Sbjct: 412 YIQITDRAKDVIK-SGGEWISSVELENALMAHPAV 445
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-30
Identities = 141/611 (23%), Positives = 221/611 (36%), Gaps = 180/611 (29%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
+ + T+ E+ + S A L G R A+L + +E + + V +
Sbjct: 24 EEKKV-TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L+ L++ +V LI D KL S
Sbjct: 83 NTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK---------------------- 120
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN--IVAT 303
F+E+ K + VA IMYTSG+TG PKGV+ T+GN A
Sbjct: 121 ---------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAV 171
Query: 304 AAAIKTLIPNPGRS--DVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDT--S 357
+A+ N G + D +LA +P+ H+ L + S++ YG + + + +
Sbjct: 172 GSAL-----NLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDA 218
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
KI K + T+++ V +
Sbjct: 219 EKINKLLQTG----GVTIISVVSTM----------------------------------- 239
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGR-----IRFMICGGAPLSADSQRFINICM--G 470
L+R+L LG R M+ GG P + C G
Sbjct: 240 --------LQRLL----------ERLGEGTYPSSFRCMLLGGGPAPKP---LLEQCKEKG 278
Query: 471 APIGQAYGLTETCAG-STFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
P+ Q+YG+TET + T S E +G G P+ C +K+ +G P G
Sbjct: 279 IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDG---VVVPPFEEG 333
Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
EIVV G NVT GY N T E + + G WF TGDIG + +G L ++DR+ D++ +
Sbjct: 334 EIVVKGPNVTKGYLNREDATRETF---QDG--WFKTGDIGYLDEEGFLYVLDRRSDLI-I 387
Query: 589 QHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWA--------HE 640
GE I ++E L+S V A VV +KW
Sbjct: 388 SGGENIYPAEIEEVLLSHPGVAE-------------AGVV--GVPDDKWGQVPVAFVVKS 432
Query: 641 ASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700
+ E+L C + KL K+++P + + E P A+
Sbjct: 433 GEVTEEELRHFCEE------------------KLAKYKVPKRFYFVEE--LPR----NAS 468
Query: 701 LKIKREQLKAK 711
K+ R +LK
Sbjct: 469 GKLLRHELKQL 479
|
Length = 483 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-28
Identities = 135/610 (22%), Positives = 220/610 (36%), Gaps = 138/610 (22%)
Query: 129 EWQ--TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI- 185
EW+ TY E + + A L++ G + + IL+ +E + + V +
Sbjct: 22 EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81
Query: 186 --YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN--------D 235
YS L +D KL + L ++ E+
Sbjct: 82 PAYSLLSKD--------------------FAKLRHIFDLLT--PGAVFAEDGAAFARALA 119
Query: 236 GSEKDSG---VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLP 290
G +F+ + + VD + + VA ++TSGSTGLP
Sbjct: 120 ALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLP 179
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGS 349
K V+ TH + A A I P V + +LP H + G
Sbjct: 180 KAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF--GGNHNF---NMVLYNGG 234
Query: 350 TLTMTD---TSSKIKKGTKG--DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
TL + D ++ + +VS PT+ VP F+ + V +E L +
Sbjct: 235 TLYIDDGKPVPGLFEETLRNLREVS---PTVYFNVPKGFEML----VDALERDAALRRRF 287
Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
F +RL + ++ L + +WD + +VR G RI
Sbjct: 288 F-----KRLRLL---FYAGAALPQDVWDRLQALAVRTT-GERIPMT-------------- 324
Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
G TET +TF W G +G P P +KLV
Sbjct: 325 ----------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV------------- 361
Query: 525 MPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ-VYPDGCLEIID 580
P G E+ V G NVT GY+ +P T+E + DE G ++ GD + V PD D
Sbjct: 362 -PNGGKLEVRVKGPNVTPGYWRDPELTAEAF--DEEG--FYRIGDAVRFVDPD------D 410
Query: 581 RKKDIV---------KLQHGEYISLGKVEAALIS--SDYVDNIMIHADPFHNYCVALVVP 629
++ +V KL G ++S+G + AL++ + V + ++ A + LV P
Sbjct: 411 PERGLVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVV-AGHDRDEIGLLVFP 469
Query: 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNE-VQQALSKVAKAAKLDKFEIPAKIKLMPE 688
+ A + A A ++ AV E + L+ +AA + L+ E
Sbjct: 470 NLAACRRLAGLAE---ASAEDVL-AHPAVREALAARLAAHNRAATGS--TRVTRALLLAE 523
Query: 689 PWTPEAGLVT 698
P + +AG +T
Sbjct: 524 PPSIDAGEIT 533
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 6e-28
Identities = 89/339 (26%), Positives = 135/339 (39%), Gaps = 85/339 (25%)
Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-V 319
G S V P+ + VA+I+YTSG+TG PKG +TH N+ A AA K +P G
Sbjct: 205 GGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264
Query: 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS------SKIKKGTKGDVSVLKP 373
LA LP+ H A + LC A+ G L + +KK P
Sbjct: 265 VLAALPMFH-----AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP--------P 311
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T + VP ++++ + + EE+G
Sbjct: 312 TWLPGVPPLYEK----IAEAAEERG----------------------------------- 332
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSE 490
+ +R G L + G + + YGLTET G+ S
Sbjct: 333 VDLSG--------VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS- 383
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
DD G VG P P +++V + D+ MP GE++V G V GY+N P +
Sbjct: 384 -DDRRPGYVGVPFPDTEVRIVDPE-----DPDETMPDGEEGELLVRGPQVFKGYWNRPEE 437
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
T++ + WF TGD+ + DG + I+DR K+++
Sbjct: 438 TAKSFLDG-----WFRTGDVVVMEEDGFIRIVDRIKELI 471
|
Length = 573 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 59/235 (25%), Positives = 93/235 (39%), Gaps = 22/235 (9%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
+ A G + T+ ++ +A A GL G A+++ +E+
Sbjct: 2 LIDADTGTEL-----------TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPP 50
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
F GC V S D L H L ++ + CD +L K+ + L + +I
Sbjct: 51 VFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRII 110
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ GV +E E +D + A ++Y+SG+TGLP
Sbjct: 111 VLDS----APDGVLRIEDLLEPRLGAEDEFR-PTPLIDGK----DDTAALLYSSGTTGLP 161
Query: 291 KGVMITHGNIVATAA-AIKTLIPNP-GRSDVYLAYLPLAHVLELAAESIMLCAGC 343
KGVM++H NI+A + TL NP +DV L +LP H L L G
Sbjct: 162 KGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGA 216
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 121/584 (20%), Positives = 209/584 (35%), Gaps = 155/584 (26%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ ++ A A L G +R A++ + +E + C + + + L E
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + L + V L+ DS E + DS
Sbjct: 61 NERTNQLEDLDVQLLLTDSL--------------------LEEKDFQADS---------- 90
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ---NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
++++ + SL + + +A +M+TSG+TG PK V T N A+A K
Sbjct: 91 ------LDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK 144
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
+ D +L LPL H+ L+ + + G+TL + D +++ + +
Sbjct: 145 ENLGF-TEDDNWLLSLPLYHISGLSI--LFRW----LIEGATLRIVDKFNQLLEMIANE- 196
Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
+ T ++ VP L R
Sbjct: 197 ---RVTHISLVPTQ-------------------------------------------LNR 210
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-T 487
+L + +++R +L G G+ + A G PI +YG+TETC+ T
Sbjct: 211 LLDEGGHNENLRKILLG--------GSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+ + VG P+ IK+ D GEI+V G N+ GY
Sbjct: 262 ATPEMLHARPDVGRPLAGREIKI---------KVDNKEGHGEIMVKGANLMKGYLYQ--- 309
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
+++G WF TGDIG++ +G L ++ R+ D++ + GE I ++E L
Sbjct: 310 GELTPAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHP 366
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHE--ASIKYEDLSELCNKAEAVNEVQQAL 665
+ A+VVP A +W A I E +++ QA
Sbjct: 367 GIQ-------------EAVVVPKPDA--EWGQVPVAYIVSE------------SDISQAK 399
Query: 666 SKVAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQL 708
KL K+++P + + E P+ KI R QL
Sbjct: 400 LIAYLTEKLAKYKVPIAFEKLDELPYNASG-------KILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-26
Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+R + G APLS + Q I Q YG+TET +T + D G VG VP
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
K+V DE G S P RGE+ V G + GY NNP T E +DE G W +TG
Sbjct: 325 VEAKIV--DEDG-GKSLGPNERGELCVKGPQIMKGYLNNPEATKET--IDEDG--WLHTG 377
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN 611
DIG DG I+DRKK+++K + G + ++EA L+ V +
Sbjct: 378 DIGYFDEDGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVAD 422
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 99/499 (19%), Positives = 164/499 (32%), Gaps = 106/499 (21%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
E TYG++ A+ L + G R AI E IA R +
Sbjct: 37 LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS---SLKTIKNVIYFENDGSEKDSG 242
L +A+ + + LI D + ++ + + +V+ G D
Sbjct: 96 SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEA 155
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-V 301
V S E E L DP ++YTSG+TG PKG++ +HG V
Sbjct: 156 VE------KASEKFEFEPL---PADDP--------LFLLYTSGTTGKPKGIVHSHGGYLV 198
Query: 302 ATAAAIKT---LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGY-GSTLTMTD 355
K L+P D + + L + S + + Y G +
Sbjct: 199 EHRLTAKFHGDLLPG----DRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPE 254
Query: 356 TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR-EGVVKKVEEKGGLTKNLFNIGYKRRLA 414
+ + K T+ P R+ G+ +
Sbjct: 255 RLWEA-------LEKYKVTIFGTSPTFLRRLMKLGLGEP--------------------- 286
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
+D S+R + G PL+ ++ + +G I
Sbjct: 287 ----------------YD---LSSLRVLG--------SAGEPLNPEAFEWFYSALGVWIL 319
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVV 532
YG TET G + G G P+P + D+ G P+P GE+VV
Sbjct: 320 DIYGQTETGMG-FIAGRPPVKNGSSGLPLPG--YAVRRVDDEG-----NPVPPGVGELVV 371
Query: 533 GGFN--VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590
+ Y+N+P + E Y W+ TGD + DG + R D++K+
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYFGR-----WYRTGDWAERDEDGYFWLHGRSDDVIKVS- 425
Query: 591 GEYISLGKVEAALISSDYV 609
G+ I ++E+ L++ V
Sbjct: 426 GKRIGPLEIESVLLAHPAV 444
|
Length = 528 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-25
Identities = 131/608 (21%), Positives = 231/608 (37%), Gaps = 127/608 (20%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVT 184
G + TY E +R + A L++ G + + IL+ +E +A +
Sbjct: 65 GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL-AAMYAGVPYAP 123
Query: 185 I---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG----- 236
+ YS + +D KL V L+ + + F +DG
Sbjct: 124 VSPAYSLVSQD--------------------FGKLRHV---LELLTPGLVFADDGAAFAR 160
Query: 237 ---SEKDSGV-----SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGS 286
+ + V G + + F+ + + VD + + +A ++TSGS
Sbjct: 161 ALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220
Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAI 345
TGLPK V+ TH + A + P V + +LP H + G +
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF--GGNHNL---GIVL 275
Query: 346 GYGSTLTMTD---TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402
G TL + D T + T ++ + PT+ VP + E +V +E L +
Sbjct: 276 YNGGTLYIDDGKPTPGGFDE-TLRNLREISPTVYFNVPKGW----EMLVPALERDAALRR 330
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
F + ++ ++ L + +WD + + A G RIR M
Sbjct: 331 RFF--------SRLKLLFYAGAALSQDVWDRL-DRVAEATCGERIRMM------------ 369
Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
G+TET +TF+ G +G P P C +KLV GG
Sbjct: 370 ------------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGG----- 410
Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ-VYPDGCLEIIDR 581
+ E+ V G NVT GY+ P T+E + DE G ++ +GD + V P D
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAF--DEEG--YYRSGDAVRFVDPA------DP 456
Query: 582 KKDIV---------KLQHGEYISLGKVEAALIS--SDYVDNIMIHADPFHNYCVALVVPS 630
++ ++ KL G ++S+G + A +S + V +++I + LV P+
Sbjct: 457 ERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVI-TGHDRDEIGLLVFPN 515
Query: 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPW 690
A + A + L+E+ ++ L+++ A + A+ L+ EP
Sbjct: 516 LDACRRLAGLLA--DASLAEVLAHPAVRAAFRERLARLNAQATGSSTRV-ARALLLDEPP 572
Query: 691 TPEAGLVT 698
+ +AG +T
Sbjct: 573 SLDAGEIT 580
|
Length = 614 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 103/486 (21%), Positives = 163/486 (33%), Gaps = 103/486 (21%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
+ TY E+ RA A L++ G AILA+ +E +A + V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L +++ T L+ + L L + ++ SE
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQAH----LRVDDVGL----PGLALDDALSEIPDTD-- 357
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
P+ +L +A I+YTSGSTG PKGV I H +
Sbjct: 358 --------------------PIPQALLGDA-LAYIIYTSGSTGQPKGVRIEHRALANLLN 396
Query: 306 AIKTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
D LA L A V E+ L G + L D ++
Sbjct: 397 DAGARFGLDAD-DRVLALASLSFDASVFEIFG---ALLEGARLVLAPALLQVDPAA---- 448
Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
+ T++ VP
Sbjct: 449 -LLELLEAQGITVLLLVPL----------------------------------------- 466
Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD--SQRFINICMGAPIGQAYGLT 480
L R+L A + + + R+R ++ GG L + + + YG T
Sbjct: 467 ---LLRLLLLAALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPT 522
Query: 481 ETCAGSTFSEWDDPSVGRV--GPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNV 537
E + RV G PV + ++ D+G P+ GE+ + G +
Sbjct: 523 EATLDAPSFPISAELESRVPIGRPVANTQLYIL--DQGL---RPLPLGVPGELYIAGLGL 577
Query: 538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
GY N P T+E + + TGD+ + DG LE + RK VK++ G I LG
Sbjct: 578 ALGYLNRPDLTAERFIALR----LYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELG 632
Query: 598 KVEAAL 603
++EAAL
Sbjct: 633 EIEAAL 638
|
Length = 642 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 130/515 (25%), Positives = 205/515 (39%), Gaps = 91/515 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ D+ FA+ L G R AI+ C + I + G VV E
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--------------IKNVIYFENDGS 237
L + L+++ ++C +++ V S+ K KN++Y
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170
Query: 238 EKDSGVSGGISNWTVSSFSEVEK---LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
+ + V S T+ ++ VEK G P DP +N +A++ YT G+TG PKGVM
Sbjct: 171 QSNLVVKVSESE-TIHLWNSVEKEVNTGVEVPCDP----ENDLALLQYTGGTTGFPKGVM 225
Query: 295 ITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
+TH N+V+ T ++ L +V L LP HV YG T M
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMTAVM 268
Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL 413
++S+++ M +P FD K +F K ++
Sbjct: 269 -------------NLSIMQGYKMVLIPK-FD----------------MKMVFEAIKKHKV 298
Query: 414 AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473
G A + L ++ + K IR I G APL + Q G +
Sbjct: 299 TLFPG----APTIYIALLNSPLLKEYDI---SSIRACISGSAPLPVEVQEKFETVTGGKL 351
Query: 474 GQAYGLTET--CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV 531
+ YGLTE+ S F W+ G +G P P ++S + G + P GEIV
Sbjct: 352 VEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETG---EALPPGEIGEIV 407
Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
V G + GY+N P +T+ V + W +TGD+G + DG + DRKKD++ + G
Sbjct: 408 VKGPQIMKGYWNKPEETAAVLQDG-----WLHTGDVGYMDEDGFFYVKDRKKDMI-VASG 461
Query: 592 EYISLGKVEAALISSDYVDNIMIHA--DPFHNYCV 624
+ +VE L + V ++ DP+ V
Sbjct: 462 FNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETV 496
|
Length = 563 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 101/379 (26%), Positives = 148/379 (39%), Gaps = 123/379 (32%)
Query: 266 PVDPSLP------------------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DPS P + +A ++YTSGSTG PKGV ++H +V ++
Sbjct: 66 PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSM 125
Query: 308 KTLIPNPGRSDVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
P G SD LA ++ VLEL + G+T+ + T
Sbjct: 126 ARR-PGLGASDRLLAVTTISFDISVLELLLPLL---------SGATVVIASAE------T 169
Query: 365 KGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
D L + T+M A PA
Sbjct: 170 VRDPERLARLIADERITIMQATPA------------------------------------ 193
Query: 418 GSWFGAWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAP 472
+W RML W +S+ A +CGG L D ++R ++ GA
Sbjct: 194 -TW-------RMLLAAGWRGR--ESLTA---------LCGGEALPRDLAERLLS--TGAE 232
Query: 473 IGQAYGLTETCAGSTFS--EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--- 527
+ YG TET ST + D V +G P+ + ++ DE +P+P
Sbjct: 233 LWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVL--DEDL-----QPVPPGVP 284
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
GE+ +GG V GY P T+E + D + G + TGD+ + PDG LE + R D
Sbjct: 285 GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADD 344
Query: 585 IVKLQHGEYISLGKVEAAL 603
VK+ G I LG++EAAL
Sbjct: 345 QVKI-RGFRIELGEIEAAL 362
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-24
Identities = 78/314 (24%), Positives = 120/314 (38%), Gaps = 61/314 (19%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAE 335
+A +T G+TG PK +H N VA A L PG DV L LPL HV
Sbjct: 4 LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG--DVLLNGLPLFHVGGAIVT 61
Query: 336 SIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
+ L G + + + + + V + TL++AVP +
Sbjct: 62 GLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTV------------ 107
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
LAA+ L+ L DA + +R+ + G
Sbjct: 108 ------------------LAAL---------LQVPLGDADISS---------LRYALTGA 131
Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSW 513
APL + R G P+ + YG+TE S + G VG +P +++
Sbjct: 132 APLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKL 191
Query: 514 DEGGYKTSD-KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
D GG D P G + + G NV GY N + ++++ W TGD+G++
Sbjct: 192 DAGGALGRDCAPGEVGVLAIRGPNVFPGYLN--DAHNAGARLEDG---WLNTGDLGRIDA 246
Query: 573 DGCLEIIDRKKDIV 586
DG L + R KD++
Sbjct: 247 DGYLWLTGRAKDLI 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 79/274 (28%), Positives = 117/274 (42%), Gaps = 56/274 (20%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---GRVGPP 502
R+RF+ APL + G P+ +AYG+TE A S P V G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
+ ++ D+ G +P+P GEIV+ G NVTAGY NNP E ++
Sbjct: 178 A-GVEVAIL--DDDG-----RPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDG---- 225
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619
WF TGD+G + DG L + R K+++ + GE IS +VE L+ V
Sbjct: 226 -WFRTGDLGYLDEDGYLFLTGRIKELIN-RGGEKISPREVEEVLLRHPAVAE-------- 275
Query: 620 HNYCVALVVPSHKALEKWAHE--ASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF 677
V VP E + E A++ S++ + E++ K +L F
Sbjct: 276 ---AVVFGVPD----ELYGEEVAAAVVLRADSKV-----TIEELRDFARK-----RLAAF 318
Query: 678 EIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKA 710
++P KI + P A KI+R +L
Sbjct: 319 KVPKKILFVDALP-------KGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 128/494 (25%), Positives = 195/494 (39%), Gaps = 88/494 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY + +R + ASGL G R AI + +E A G V I L
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + H L + V L+ S++L L ++ +I S G
Sbjct: 87 EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIV--GDPAHASEGHPGEE--- 141
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+S+ ++ LG P P + S +A I+YTSGSTG PKGV+++H N+VA A ++ T +
Sbjct: 142 PASWPKLLALGDADPPHPVIDSD--MAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199
Query: 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVS 369
N P D LA LPL + YG + LT G
Sbjct: 200 ENRPD--DRLLAVLPL-----------------SFDYGFNQLTTAFYV--------GATV 232
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
VL L+ R+ V+K +E K G+T LAAV W L ++
Sbjct: 233 VLHDYLL---------PRD-VLKALE-KHGITG----------LAAVPPLWAQ---LAQL 268
Query: 430 LWDAIVFKSVR--AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
W S+R GG + A LS N A + YGLTE ST
Sbjct: 269 DWPESAAPSLRYLTNSGGAMP-----RATLSRLRSFLPN----ARLFLMYGLTEAFR-ST 318
Query: 488 F--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
+ E D +G +P + LV ++G + GE+V G V GY+N+P
Sbjct: 319 YLPPEEVDRRPDSIGKAIPNAEV-LVLREDGSECAPGEE---GELVHRGALVAMGYWNDP 374
Query: 546 GKTSEVYKVDER--------GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
KT+E ++ + ++GD + +G L + R+ +++K G +S
Sbjct: 375 EKTAERFRPLPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432
Query: 598 KVEAALISSDYVDN 611
+VE ++ V
Sbjct: 433 EVEEVAYATGLVAE 446
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 98/377 (25%), Positives = 146/377 (38%), Gaps = 115/377 (30%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I ++SGSTG PKGV++TH N++ A I+ DV+L+++PL H + L
Sbjct: 109 AFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEIT--SEDVFLSWMPLTHDMGL---- 162
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
IG+ T T + + + L P ++ + K +
Sbjct: 163 --------IGFHLTPTALGINQYL----------MPTRLFIRRPLLW-------LDKASQ 197
Query: 397 -KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
+ + + N GYK L + W L SVR +I GA
Sbjct: 198 HRATILSSP-NFGYKYLLKHFKTEKIIDWDL----------SSVR---------LIFNGA 237
Query: 456 -PLSAD-SQRFINICMGAPIGQA-------YGLTETCAGSTFSEWDDP----SVGR---- 498
P+SAD + F+ AP G YGL E +F + +P + R
Sbjct: 238 EPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLK 295
Query: 499 --------------------VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
VG P+ C I++V D+ G D+ + G I + G NVT
Sbjct: 296 VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV--DDAGEVLPDRTI--GHIQIKGDNVT 351
Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV------------ 586
+GY+NNP T + D W TGD+G + +G L I R KDI+
Sbjct: 352 SGYYNNPEATKKSITPDG----WLKTGDLGFLR-NGRLVITGRAKDIIIVNGQNYYPHDI 406
Query: 587 --KLQHGEYISLGKVEA 601
+ E I LG+V A
Sbjct: 407 ERVAEQVEGIKLGRVAA 423
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 116/492 (23%), Positives = 186/492 (37%), Gaps = 117/492 (23%)
Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E FA+ L+ R A++ C+++ IA G R +TVV +
Sbjct: 52 TYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYT 111
Query: 191 EDALIHSLNETQVTTLI-----CDSKQ---------------------LKKLSAVSSSLK 224
L H L ++ + L+ + Q K + V+ +K
Sbjct: 112 PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVK 171
Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
+K ++ + ++G I F E LG++ + + +A + YT
Sbjct: 172 YVKKLV--------PEYRINGAIR------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESI--M 338
G+TG+ KG M+TH N+VA + G+ +V + LPL H+ L A + M
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFM 277
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398
GC + M G V LK T A +
Sbjct: 278 KIGGCNHLISNPRDM-----------PGFVKELKKTRFTAFTGV---------------- 310
Query: 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
LFN L G +D I F S++ LGG G A
Sbjct: 311 ---NTLFN-----GLLNTPG------------FDQIDFSSLKMTLGG-------GMAVQR 343
Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLVSWDEGG 517
+ ++R+ + G + +AYGLTET + + G +G P+P S D
Sbjct: 344 SVAERWKQV-TGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIP-------STDACI 395
Query: 518 YKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+ + GEI + G V GY+ P +T++V +D G W +TGDI ++ G
Sbjct: 396 KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV--MDADG--WLHTGDIARMDEQG 451
Query: 575 CLEIIDRKKDIV 586
+ I+DRKKD++
Sbjct: 452 FVYIVDRKKDMI 463
|
Length = 560 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 9e-22
Identities = 105/358 (29%), Positives = 145/358 (40%), Gaps = 80/358 (22%)
Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI----KTLIPNPGR 316
V + Q+ VA IMY+SG+TG KGV++TH N++A + PG
Sbjct: 184 KEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGS 243
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSKIKKGTKGDVS---V 370
+VYLA LP+ H+ L+ + L + GST+ + D S +K + V+ V
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGL-----LSLGSTIVVMRRFDASDMVKVIDRFKVTHFPV 298
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
+ P LMA + KK + G
Sbjct: 299 VPPILMA------------LTKKAKGVCGE------------------------------ 316
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST-- 487
V KS++ V CG APLS Q F+ Q YG+TE+ A T
Sbjct: 317 ----VLKSLKQV--------SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG 364
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
F+ VG P K+V W G P GE+ + G V GY NNP
Sbjct: 365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKA 421
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T +D+ G W TGDI DG L I+DR K+I+K + G I+ +EA LIS
Sbjct: 422 TQS--TIDKDG--WLRTGDIAYFDEDGYLYIVDRLKEIIKYK-GFQIAPADLEAVLIS 474
|
Length = 560 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 1e-21
Identities = 132/599 (22%), Positives = 223/599 (37%), Gaps = 134/599 (22%)
Query: 125 LGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV 183
+ + E TY ++ + A+ L+ R AIL++ +E+ + + V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 184 TIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243
+ L E+ LI L ++ T L + K ++ S++ K S V
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVE----KTFQNMALSMQ--------------KVSYV 123
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
IS ++S E+E R + +++ +I YTSG+TG PKG ++T N+
Sbjct: 124 QRVIS---ITSLKEIED---RKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWN 177
Query: 304 AAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
A T + D + LPL H+ + L A + AG I T S I+
Sbjct: 178 ALN-NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF-AGGVIIVPRKFEPTKALSMIE 235
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
K K T++ VP I + T NL ++
Sbjct: 236 KH--------KVTVVMGVPTIHQALINCSKF-------ETTNLQSV-------------- 266
Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLT 480
R ++ GGAP + + FI+ G GQ +G+T
Sbjct: 267 ------RWFYN--------------------GGAPCPEELMREFID--RGFLFGQGFGMT 298
Query: 481 ETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
ET +D VG +G PV C +L+ ++ + GE+++ G NV
Sbjct: 299 ETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV----EVGEVGELLIRGPNVM 354
Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK 598
Y+N P T E + W TGD+ +V DG + I+ RKK+++ + GE I +
Sbjct: 355 KEYWNRPDATEETIQDG-----WLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLE 408
Query: 599 VEAALISSDYVDNIMIHADPFHNY---CVALVVPSHKALEKWAHEASIKYEDLSELCNKA 655
VE + V + + + +A +V + + +D+ E C
Sbjct: 409 VEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS--------SVLIEKDVIEHCR-- 458
Query: 656 EAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714
L K++IP +I + E P+ A KI++ QL + K
Sbjct: 459 ----------------LFLAKYKIPKEIVFLKE--LPK----NATGKIQKAQLVNQLKS 495
|
Length = 496 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-21
Identities = 146/645 (22%), Positives = 229/645 (35%), Gaps = 147/645 (22%)
Query: 112 VTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA---ETCVEW 168
VT S R+ +T E D S A+GL+ G AI A + +EW
Sbjct: 25 VTISGNRR-----------RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEW 73
Query: 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIK 227
+A C + + S E ++ + L+ D + L ++
Sbjct: 74 LLAV-ACAGGIVAPLNYRWSFEEAKS--AMLLVRPVMLVTDETCSSWYEELQNDRLPSLM 130
Query: 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP---SQNGVAVIMYTS 284
++ E+ S ++ SF E L +R+ L + + +I +TS
Sbjct: 131 WQVFLESPSSSVFIFLN---------SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTS 181
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG-C 343
G+TG PKGV I+H ++ + A K I G DVYL PL H+ L++ ML G C
Sbjct: 182 GTTGRPKGVTISHSALIVQSLA-KIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGAC 240
Query: 344 AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF-DRVREGVVKKVEEKGGLTK 402
+ L D + ++ + +V T M VPA+ D +
Sbjct: 241 HV----LLPKFDAKAALQAIKQHNV-----TSMITVPAMMADLIS--------------- 276
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-S 461
L +W F SVR +L G G LS+
Sbjct: 277 ----------LTRKSMTWKV-------------FPSVRKILNG--------GGSLSSRLL 305
Query: 462 QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---------------GRVGPPVPCC 506
+ A + AYG+TE C+ TF DP++ V P C
Sbjct: 306 PDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVC 365
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
K E D+ G I+ G +V GY+ +T+ V D W TGD
Sbjct: 366 VGKPAPHVELKIG-LDESSRVGRILTRGPHVMLGYWGQNSETASVLSND----GWLDTGD 420
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL-----ISSDYVDNI-------MI 614
IG + G L +I R D +K GE + +VEA L ++S V + M+
Sbjct: 421 IGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMV 479
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
A CV L + W+ + L + L + L
Sbjct: 480 VA------CVRL-----RDGWIWSDNEKENAKKNLTLS---------SETLRHHCREKNL 519
Query: 675 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQML 719
+F+IP +P+ +T KI+R++++ + LQ L
Sbjct: 520 SRFKIPKLFVQWRKPFP-----LTTTGKIRRDEVRREVLSHLQSL 559
|
Length = 563 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-20
Identities = 148/705 (20%), Positives = 248/705 (35%), Gaps = 178/705 (25%)
Query: 44 RKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGK 103
R K + VE + I++ ++ L + P +L +
Sbjct: 17 RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70
Query: 104 RKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163
R+ ++ K+ TYGE + A L++ G + IL+
Sbjct: 71 RE---------PGHGQWRKV--------TYGEAKRAVDALAQALLDLGLDPGRPVMILSG 113
Query: 164 TCVEWFIAFQGCFRQSITVVTI---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS 220
+E + + + + YS + D H+ +LK L +
Sbjct: 114 NSIEHALMTLAAMQAGVPAAPVSPAYSLMSHD---HA--------------KLKHLFDL- 155
Query: 221 SSLKTIKNVIYFENDGSEKDSG-------------VSGGISNWTVSSFSEVEKLGKRSPV 267
+K + F G+ V+G +F+++ + V
Sbjct: 156 -----VKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAV 210
Query: 268 DPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGRSDVYLA 322
++ + + VA ++TSGSTG+PK V+ T + A A + L P+P V L
Sbjct: 211 AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP-VSLD 269
Query: 323 YLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTD---TSSKIKKGTKG--DVSVL 371
++P H G + G TL + D ++ + ++S
Sbjct: 270 WMPWNH-----------TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS-- 316
Query: 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
PT+ VPA + + E + K + KNL + Y G L L+
Sbjct: 317 -PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAY------------GGATLSDDLY 363
Query: 432 DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW 491
+ + +VR G RI F YG TET +T + W
Sbjct: 364 ERMQALAVRTT-GHRIPFY------------------------TGYGATETAPTTTGTHW 398
Query: 492 DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKT 548
D VG +G P+P +KL P G E+ V G NVT GY +P T
Sbjct: 399 DTERVGLIGLPLPGVELKLA--------------PVGDKYEVRVKGPNVTPGYHKDPELT 444
Query: 549 SEVYKVDERGMCWFY-TGDIGQ-VYPDGCLEIIDRKKDIV---------KLQHGEYISLG 597
+ + DE G FY GD + V PD D +K ++ KL G ++S+G
Sbjct: 445 AAAF--DEEG---FYRLGDAARFVDPD------DPEKGLIFDGRVAEDFKLSTGTWVSVG 493
Query: 598 KVEAALI--SSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKA 655
+ + S + + ++ A + L P+ A + A + ED+ K
Sbjct: 494 TLRPDAVAACSPVIHDAVV-AGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVV----KH 548
Query: 656 EAVNE-VQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699
AV +++ LS A I A+ LM EP + +AG +T
Sbjct: 549 PAVLAILREGLSAHNAEAGGSSSRI-ARALLMTEPPSIDAGEITD 592
|
Length = 624 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 99/425 (23%), Positives = 164/425 (38%), Gaps = 100/425 (23%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGN--IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
VA+ + G+TGLPK + TH + A A+A + +PG VYLA LP AH L++
Sbjct: 141 VALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL-DPG--TVYLAVLPAAHNFTLSS 197
Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
++ A+ G T+ + P+ A P I RE V
Sbjct: 198 PGLL----GALLAGGTVVLHHP----------------PSPDVAFPLI---EREKVT--- 231
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
A+ + W LE WD S+R + GG
Sbjct: 232 ------------------HTALVPALLNLW-LEAAEWDQADLSSLRVIQ--------VGG 264
Query: 455 APLSADSQRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVS 512
APLS + R + +G P+ Q +G+ E + + D + G P+ P I++V
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIV- 323
Query: 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
D+ G + GE++ G GY+ P + + D ++ TGD+ ++
Sbjct: 324 -DDQGEPVPPGEV--GELLTRGPYTIRGYYRAPEHNARAFTDD----GFYRTGDLVRIDA 376
Query: 573 DGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPF--HNYCVALVV 628
DG ++ R KD + + GE IS ++E L+S V + ++ D C +V
Sbjct: 377 DGYYRVVGRIKDQIN-RGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVV- 434
Query: 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE 688
A+ L+EL + L KF++P +++++
Sbjct: 435 --------PRGGAAP---TLAELR--------------AFLREQGLAKFKLPDRLEVVDS 469
Query: 689 -PWTP 692
P TP
Sbjct: 470 LPLTP 474
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 49/258 (18%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV--GRVGP 501
+R +CGGAP+ + ++R +GA + +AYG+TE + + D G
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGR 266
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
PVP +++V D+ +P GE+ V G + GY + P T + G
Sbjct: 267 PVPGVEVRIV--DD-----DGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAF---TDDG 316
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
WF TGD+G++ DG L I RKKDI+ ++ GE IS ++E L+ V + + A P
Sbjct: 317 --WFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAVVAMP 373
Query: 619 ---FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLD 675
A+VVP A AS+ +L+E A L
Sbjct: 374 DERLGERVCAVVVP--------APGASLTLAELTEHL-----------------AAQGLA 408
Query: 676 KFEIPAKIKLMPE-PWTP 692
K + P +++++ P TP
Sbjct: 409 KQKWPERLEVVDALPRTP 426
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-19
Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 29/201 (14%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY----S 187
TY E+ RA + A+ L G D R +LA +++ AF GC V
Sbjct: 25 TYAELDRRARAIAARLQALGAPGD-RVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
L L + ++ S L L A ++ + ++ +D + +
Sbjct: 84 GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAA----- 138
Query: 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P + +A + YTSGSTG PKGVM+THGN++A AI
Sbjct: 139 -----------------DWRPPPPDP-DDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 308 KTLIPNPGRSDVYLAYLPLAH 328
DV +++LPL H
Sbjct: 181 ARAFG-LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-19
Identities = 97/344 (28%), Positives = 143/344 (41%), Gaps = 81/344 (23%)
Query: 254 SFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT---AAAIKT 309
SF G+R V P L +A + YT G+TG+ KG M+TH N++A A A
Sbjct: 185 SFRSALHKGRRMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG 243
Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
+ +PG+ V A LPL H+ L ++ I+ G +
Sbjct: 244 PLLHPGKELVVTA-LPLYHIFALTVNCLLF--------------------IELGGQN--- 279
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG--SWFGAWGLE 427
L+ P R G VK+++ K A+ G + F A L
Sbjct: 280 -----LLITNP----RDIPGFVKELK--------------KYPFTAITGVNTLFNAL-LN 315
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE-----T 482
+ + F S++ +GG G A A ++R++ + G + + YGLTE +
Sbjct: 316 NEEFQELDFSSLKLSVGG-------GMAVQQAVAERWVKL-TGQYLLEGYGLTECSPLVS 367
Query: 483 CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
+ G +G PVP IKLV D+G +P GE+ V G V GY+
Sbjct: 368 VNPYDLDYYS----GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYW 419
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
P T EV K G W TGDI + +G L I+DRKKD++
Sbjct: 420 QRPEATDEVIK---DG--WLATGDIAVMDEEGFLRIVDRKKDMI 458
|
Length = 560 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 4e-18
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 18/202 (8%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS 188
TY E+ R A+ L G R AI A W IA G + VV T Y++
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
E A I L L L + ++ L +++V+ E + + +
Sbjct: 92 -DEAAYI--LARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK--- 145
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+F++ G + P + + VA I++TSG+TG PKG M+TH +++ AA
Sbjct: 146 -----TFTDFLAAGDPAERAPEVDPDD-VADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199
Query: 309 TLIP-NPGRSDVYLAYLPLAHV 329
+ G D YLA P HV
Sbjct: 200 EYLGLTEG--DRYLAANPFFHV 219
|
Length = 513 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 6e-18
Identities = 119/504 (23%), Positives = 179/504 (35%), Gaps = 119/504 (23%)
Query: 127 DYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY 186
Y+ ++ E+ R+ + A GL G RA ++ +E+F F+ V +
Sbjct: 38 AYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVD 97
Query: 187 SSLGEDALIHSLNETQVTTLICDSK-QLKK--LSAVSSSLKTIKNVIYFENDGSEKDSGV 243
+G L L E Q I K L + S++ + V
Sbjct: 98 PGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTV-------------- 143
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
GG W ++ + + + G +P + + + +A I++TSGSTG PKGV+ THG A
Sbjct: 144 -GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQ 202
Query: 304 AAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
A++ PG D L PL + A L MT
Sbjct: 203 IEALREDYGIEPGEID--LPTFPLFALFGPA-----------------LGMT-------- 235
Query: 363 GTKGDVSVLKPTLMAAVPA------IFDRVREGVVKKVEEKGGLTKNLF-NIGYKRRLAA 415
SV+ P + PA +F + E+ G+T NLF + RL
Sbjct: 236 ------SVI-PDMDPTRPATVDPAKLFAAI---------ERYGVT-NLFGSPALLERL-- 276
Query: 416 VEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPI 473
G +G I S+R V I GAP+ +RF + A I
Sbjct: 277 ------GRYGEAN----GIKLPSLRRV--------ISAGAPVPIAVIERFRAMLPPDAEI 318
Query: 474 GQAYGLTE-----TCAGST--FSEWDDPSVGR---VGPPVPCCYIKLV--------SWDE 515
YG TE + F+ G VG PV ++++ WD+
Sbjct: 319 LTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDD 378
Query: 516 GGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
+ GEIVV G VT Y+N P T D +G W GD+G +
Sbjct: 379 ------ALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA 432
Query: 573 DGCLEIIDRKKDIVKLQHGEYISL 596
G L RK V+ G ++
Sbjct: 433 QGRLWFCGRKAHRVETAGGTLYTI 456
|
Length = 552 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-18
Identities = 121/498 (24%), Positives = 181/498 (36%), Gaps = 134/498 (26%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
R A+ + ++W IA C + I + I H LN+ LI D
Sbjct: 26 RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDA--A 83
Query: 217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG 276
SA+ + T+ +Y + S LP+ G
Sbjct: 84 SALHTPFATLGEDLYIAL----------------------------RPSANPVELPA--G 113
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE-LAAE 335
A I YTSGSTG PKGV ++ + A ++ I + +L LPLA +LE +A
Sbjct: 114 TAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI-AILEPERHLCLLPLATLLENIAGV 172
Query: 336 SIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393
L G + + L ++ +S +S +P + VP
Sbjct: 173 YAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQ------------ 220
Query: 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR--AVLGGRIRFMI 451
L L +AAVE G +S+R AV G R+
Sbjct: 221 ------LLMAL--------VAAVEQ------GPLP-------PESLRFVAVGGARV---- 249
Query: 452 CGGAPL--SADSQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSVGRVGPPVPC 505
L A + +G P+ + YGL+E CA S S D P G VG P+P
Sbjct: 250 --SPSLLQRARA-------LGLPVYEGYGLSE-CA-SVVSLNTPGADRP--GSVGKPLPH 296
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
+ + GEI+V G ++ GY P T + W+ TG
Sbjct: 297 VQVSIA--------------NDGEILVRG-SLMLGYLGEPPATDD----------WWATG 331
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD--PFHNYC 623
D+G + +G L I RKK+++ G +S VE+ L + + ++ D PF
Sbjct: 332 DLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDAQPF---L 388
Query: 624 VALVVP----SHKALEKW 637
VAL+VP S LE
Sbjct: 389 VALIVPAPNISDDQLEAA 406
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 42/238 (17%)
Query: 477 YGLTETCAGSTF---SEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
YGLTE ST+ E D P +G +P + +V DE G + P GE+V
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRP--DSIGKAIPNVELWVV--DEDGNRC--APGEVGELVH 202
Query: 533 GGFNVTAGYFNNPGKTSEVYK-VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
G NV GY+N+P T+E + G YTGD+ ++ +G L + RK D++K + G
Sbjct: 203 RGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTR-G 261
Query: 592 EYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSEL 651
+S ++E + + V + VP + +
Sbjct: 262 YRVSPTEIEEVICAHPLVAE-----------AAVIGVPDPLLGQAIVAVVVSADGE---- 306
Query: 652 CNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709
+ E+ + K L + +PA+I + ++ A K+ R L+
Sbjct: 307 ---SLDEKELLKHCRKH-----LPNYMVPAEIVFV------DSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-17
Identities = 57/196 (29%), Positives = 78/196 (39%), Gaps = 55/196 (28%)
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
++ + L +R M G P A ++ +G + YGLTET T EW
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKP--- 328
Query: 497 GRVGPPVPCCYIKLVSWDEG--------------GYKTSD----------KPMPR----- 527
WD Y + K +PR
Sbjct: 329 ---------------EWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTI 373
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GEIV+ G V GY+ NP T E + G WF++GD+ V+PDG +EI DR KDI+
Sbjct: 374 GEIVMRGNTVMKGYYKNPEATEEAFA---GG--WFHSGDLAVVHPDGYIEIKDRSKDII- 427
Query: 588 LQHGEYISLGKVEAAL 603
+ GE IS +VE L
Sbjct: 428 ISGGENISSIEVEGVL 443
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 64/198 (32%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 449 FMICG----GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR-----V 499
F+ CG A +RF N A I YG TE T E + R +
Sbjct: 219 FLFCGEVLPKKLAKALRRRFPN----ARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
G P P ++ DE G P GE+V+ G V+ GY NNP KT++ + DE G
Sbjct: 275 GYPKPGLRALIL--DEDG--RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE-GQ 329
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHA 616
W+ TGD+ + DG L + RK +KL HG I L ++EAAL + V+ + +
Sbjct: 330 RWYRTGDLVYLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPK 388
Query: 617 DPFHNYCVALVVPSHKAL 634
VA VV AL
Sbjct: 389 GEKVVRLVAFVVGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
++ + GG L + G I + YG+TET + + VG +G PVP
Sbjct: 327 ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPS 386
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
K++ D+G + GE+ V G V GY+ P T E+ +D G W TG
Sbjct: 387 TLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEI--LDSDG--WLKTG 438
Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
DI + DG + I+DRKKD++
Sbjct: 439 DIALIQEDGYMRIVDRKKDMI 459
|
Length = 562 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-16
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 36/209 (17%)
Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF-------SEWDDPSVG 497
+R +I GG L A+ +R+ + GA + AYG TET T+ + +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKV 554
R P+ + ++ DE +P+P GE+ +GG V GY N P T+E +
Sbjct: 269 R---PIANTRVYVL--DEDL-----RPVPVGVPGELYIGGAGVARGYLNRPELTAERFVP 318
Query: 555 D------ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
D ER Y TGD+ + PDG LE + R D VK+ G I LG++EAAL++
Sbjct: 319 DPFGGPGER----LYRTGDLARWLPDGNLEFLGRADDQVKI-RGYRIELGEIEAALLAHP 373
Query: 608 YVDN---IMIHADPFHNYCVALVVPSHKA 633
V + VA VVP+ A
Sbjct: 374 GVREAVVVAREDGAGEKRLVAYVVPAAGA 402
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGA L + G + YGLTET + F+ D P +G PV +++
Sbjct: 206 GGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVI 265
Query: 512 SWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
+ G + +P GEIVV G V GY+N P T+E + + G +F TGD+G
Sbjct: 266 DPETG------EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELD-GKRFFRTGDLG 318
Query: 569 QVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
+ +G +DR K ++ + G + +VEA L
Sbjct: 319 YIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALL 352
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-16
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 59/257 (22%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVP 504
+R I G APL A++ R G I + YG+TET +T + +D G VG P+P
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNM-NTSNPYDGERRAGTVGFPLP 328
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+++ + G +P GE I V G NV GY+ P KT+E ++ D G +
Sbjct: 329 GVSLRVTDPETG------AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRAD--G--F 378
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV---------KLQHGEYISL-GKVEAALISSDYVDN 611
F TGD+G++ G + I+ R KD++ K GE L G VE+A+I
Sbjct: 379 FITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIG------ 432
Query: 612 IMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671
+ H D F A+VVP A L E + AL
Sbjct: 433 -VPHPD-FGEGVTAVVVPKPGA-------------ALDE--------AAILAAL-----K 464
Query: 672 AKLDKFEIPAKIKLMPE 688
+L +F+ P ++ + E
Sbjct: 465 GRLARFKQPKRVFFVDE 481
|
Length = 504 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-16
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 29/207 (14%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLV 511
G A + A ++R+ + G I + YGLTET ++ + + + + +G VG PVP +K++
Sbjct: 342 GTALVKATAERWEQL-TGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI 400
Query: 512 SWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
D+G ++ P+ RGE+ + G V GY+ P T+E +D G WF TGDI +
Sbjct: 401 D-DDG----NELPLGERGELCIKGPQVMKGYWQQPEATAEA--LDAEG--WFKTGDIAVI 451
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPS 630
PDG + I+DRKKD++ + G + ++E D +M H P C A+ VP
Sbjct: 452 DPDGFVRIVDRKKDLI-IVSGFNVYPNEIE---------DVVMAH--PKVANCAAIGVPD 499
Query: 631 HKALEK-----WAHEASIKYEDLSELC 652
++ E A + + E+L C
Sbjct: 500 ERSGEAVKLFVVARDPGLSVEELKAYC 526
|
Length = 562 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 110/446 (24%), Positives = 157/446 (35%), Gaps = 118/446 (26%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
A+IM+T G+TGLPK V TH NI ++ AI T D +A +PL H L A +
Sbjct: 179 AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALL 237
Query: 338 MLCAGC------AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
A A G S T D D+ + T AVP I + E
Sbjct: 238 ATLASGGAVLLPARGRFSAHTFWD-----------DIKAVGATWYTAVPTIHQILLE--- 283
Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
AA E A L RF+
Sbjct: 284 ---------------------RAATEP-----------------SGRKPAAL----RFIR 301
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETC--AGSTFSEW----DDPS-----VGRVG 500
APL+A++ + + AP+ A+G+TE +T E ++P VGR
Sbjct: 302 SCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
I++V D GE+ + G V GY +P T+ +
Sbjct: 362 GA----QIRIVGSDGL----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDG----- 408
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620
W TGD+G + G L I R K+++ + GE IS +VE L S V + P
Sbjct: 409 WLRTGDLGSLSAAGDLSIRGRIKELIN-RGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467
Query: 621 NY---CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF 677
Y A++VP A E+L + C + +L F
Sbjct: 468 LYGEAVAAVIVPRES--------APPTAEELVQFCRE------------------RLAAF 501
Query: 678 EIPAKIKLMPE-PWTPEAGLVTAALK 702
EIPA + P T + L A+
Sbjct: 502 EIPASFQEASGLPHTAKGSLDRRAVA 527
|
Length = 534 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 42/209 (20%)
Query: 413 LAAVE-----GSWFGAWGLERMLW----DAIVFKSVRAVLGG-------RIRFMICGGAP 456
LAA+E +W L R+L D S+ +GG RIR
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIR-------- 282
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWD 514
F + A AYGLTETC+G T E + +G G + I++
Sbjct: 283 ------DFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-G 335
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
G + P +GEI + G VT GY+ +P KT+E + D WF +GD+G + +G
Sbjct: 336 AGRWLP---PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-----WFRSGDVGYLDEEG 387
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
L + DRKKD++ + GE I+ +VE +
Sbjct: 388 FLYLTDRKKDMI-ISGGENIASSEVERVI 415
|
Length = 497 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 34/209 (16%)
Query: 446 RIRFMICGGAPLSAD-------SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR 498
+R +I GG +R +N YG TE +T S
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
+G P+P ++ + +P GE+ +GG V GY N P T+E + D
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPD 313
Query: 556 -----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
G + TGD+ + DG LE + RK D VK+ G+ I LG++EA L + V
Sbjct: 314 PFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVV 372
Query: 611 N---IMIHADPFHNYCVALVVPSHKALEK 636
+++ DP VA + A +
Sbjct: 373 VAAVVLLLDDPGGKQLVAFLAVDGAAGGE 401
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 78/344 (22%), Positives = 118/344 (34%), Gaps = 85/344 (24%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPG-----RSDVYLAYLPLAHV 329
+A +YTSG+TG PKGVM H + + A A + L PG S ++ AY L +
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLGNS 151
Query: 330 LELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389
L + A+ T + + +PT++ VPA++ + E
Sbjct: 152 LLFP----LFSGASAVLLPGWPTPEAVLDLLAR--------HRPTVLFGVPALYRALLES 199
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
G + LF +SVR
Sbjct: 200 --------GAGSAPLF-------------------------------RSVRLC------- 213
Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTET----CAGSTFSEWDDPSVGRVGPPVPC 505
+ G L A G I G TE + + + GR P
Sbjct: 214 -VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFIS-NRPGAARPGTTGRPVPGYEA 271
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
LV + G + G++ V G ++ GY+N P KT + D W TG
Sbjct: 272 R---LVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR-DG----WLRTG 319
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D DG R D++K+ G+++S +VEAAL V
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAV 362
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-15
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 446 RIRFMICGGAPLSADSQ-----RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
+RF GAPL A RF G + + YG+TET + D G G
Sbjct: 197 PLRF--VFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGVP-IIAPGDPAPPGSCG 248
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV---GGFNVTAGYFNNPGKTSEVYKV 554
P P +++V DE + +P GE+VV + + GY+ P T++ +
Sbjct: 249 RPRPGVEVRIV--DED-----GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-- 299
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
R WF+TGD G+ DG L +DRKKD ++ + GE IS +VEAA+++ V +
Sbjct: 300 --RNG-WFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAV 355
Query: 615 HADP 618
A P
Sbjct: 356 VAVP 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-15
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
G VG P+P +++V + + +P GE I++GG V GY +P KT+EV K
Sbjct: 960 GSVGMPLPGVAVRIVDPETF------EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
D G+ W+ TGD G + DG L I DR K+ GE + LG VE L
Sbjct: 1014 -DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVEEEL 1061
|
Length = 1146 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-15
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 476 AYGLTETCAGSTFSEWDDPSV---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
YGL+E +TF+ DD G +G + K+V +E G + +P GE
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIV--NELG-----EEVPVGEVGE 365
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
++V G NV GY+++P T+ D W +TGD+G++ +G L I+DRKKD+
Sbjct: 366 LLVRGPNVMKGYYDDPEATAAAIDADG----WLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 8e-15
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 38/245 (15%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLV 511
GGAPL + F G + +G+TETC+ T + P G +G +P + +V
Sbjct: 320 GGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVV 379
Query: 512 SWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
S D+ K +P GE + + G NVT GY+N P +++E + V +R F TGDIG
Sbjct: 380 SLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDR----FLTGDIG 429
Query: 569 QVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVV 628
+ DG ++DRKKD++ + G + +E A+ V +++ P
Sbjct: 430 YMDTDGYFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIGIP---------- 478
Query: 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE 688
+++ EA+ + L K +++E++ L A KL K E+P ++ + E
Sbjct: 479 ------DQYRGEAAKAFVKLRP-GAKPFSLDELRAFL-----AGKLGKHELPVAVEFVDE 526
Query: 689 -PWTP 692
P TP
Sbjct: 527 LPRTP 531
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-14
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 22/120 (18%)
Query: 476 AYGLTETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-- 527
AYG+TET ST + DDP +VGR P + +K+V + G + +PR
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLE---VKIVDPETG------ETVPRGE 397
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE+ G++V GY+N+P KT+E +D G W +TGD+ + +G + I+ R KD++
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA--IDADG--WMHTGDLAVMDEEGYVNIVGRIKDMI 453
|
Length = 559 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TYGE+ + + + L G + R ++ E+ AF G + V I + L
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D + LN+++ L+ + + L +++VI V GG
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI------------VVGGAGPGA 139
Query: 252 VSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
S+++ L + + + S + +A +Y+SGSTG PKGV+ H +++ TA A
Sbjct: 140 -LSYAQ---LIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-14
Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET------CAGSTFSE 490
RA + + M+ G AP +A + +G + YGLTET CA E
Sbjct: 289 AEWRAGIDHPVHAMVAGAAPPAAVIAKMEE--IGFDLTHVYGLTETYGPATVCAWQ--PE 344
Query: 491 WDDPSV-------GRVGPPVPCCYIKLVSWDEGGYKTSD----KPMPR-----GEIVVGG 534
WD + R G P + G D +P+P GEI+ G
Sbjct: 345 WDALPLDERAQLKARQGVRYPL---------QEGVTVLDPDTMQPVPADGETIGEIMFRG 395
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
V GY NP T E + G WF+TGD+ ++PDG ++I DR KDI+ + GE I
Sbjct: 396 NIVMKGYLKNPKATEEAF---AGG--WFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENI 449
Query: 595 SLGKVEAAL 603
S +VE L
Sbjct: 450 SSIEVEDVL 458
|
Length = 545 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 87/361 (24%), Positives = 133/361 (36%), Gaps = 92/361 (25%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
PS + V ++YTSG+TG PKGVM T NI A ++ G DV L P+A
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMA 246
Query: 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT----LMAAVPAIF 383
H M + +T + D + + +++ T MA+ P +
Sbjct: 247 HQ-----TGFMYGLMMPLILNATAVLQDIWNPARA-----AELIRETGVTFTMASTPFLT 296
Query: 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL 443
D R V+E G +LF
Sbjct: 297 DLCR-----AVKESGAPVPSLFT------------------------------------- 314
Query: 444 GGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVG 500
+C GAP+ +GA I A+G+TE T +E DD + G
Sbjct: 315 ------FLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEPDDALEKASTTDG 367
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDER 557
P+P +K++ + + +GE +V G + GY P S D
Sbjct: 368 RPLPGVEVKVIDAN-------GAKLSQGETGRLLVRGCSNFGGYLKRPHLNS----TDAE 416
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD 617
G WF TGD+ +G + I R KD++ ++ GE I + ++E L V + I A
Sbjct: 417 G--WFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 618 P 618
P
Sbjct: 474 P 474
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 3e-14
Identities = 100/494 (20%), Positives = 164/494 (33%), Gaps = 110/494 (22%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A L G + R AI AE E +A + V + +
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L ++ L+ L++L + G++
Sbjct: 2090 ERLAYMLEDSGAALLLTQRHLLERLP-------------------------LPAGVARLP 2124
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG----NIVATAAAI 307
+ +E +P L +N +A ++YTSGSTGLPKGV ++HG + A
Sbjct: 2125 LDRDAEWADYPDTAP-AVQLAGEN-LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY 2182
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTK 365
+ +D L ++ + + A E L G + + D +
Sbjct: 2183 EL-----SPADCELQFMSFS--FDGAHEQWFHPLLNGAR------VLIRDDELWDPEQLY 2229
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
++ T++ P ++ E E+ G + R FG
Sbjct: 2230 DEMERHGVTILDFPPVYLQQLAE-----HAERDGRPPAV------RVYC------FGG-- 2270
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
+A+ S+R N YG TE
Sbjct: 2271 ------EAVPAASLRLAWEA-------------LRPVYLFN---------GYGPTEAVVT 2302
Query: 486 STF--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGY--KTSDKPMPR---GEIVVGGFNVT 538
DP G P I + Y + GE+ +GG +
Sbjct: 2303 PLLWKCRPQDPC-GAAYVP-----IGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLA 2356
Query: 539 AGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
GY N PG T+E + D G + TGD+ + DG +E + R VK++ G I
Sbjct: 2357 RGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIR-GFRIE 2415
Query: 596 LGKVEAALISSDYV 609
LG++EA L + V
Sbjct: 2416 LGEIEARLQAHPAV 2429
|
Length = 5163 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 6e-14
Identities = 64/233 (27%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 447 IRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGR 498
+RF +CGG + QR I + YG TE+ DDP +
Sbjct: 304 LRFFLCGGTTIPKKVARECQQRGIKLL------SVYGSTESSP-HAVVNLDDPLSRFMHT 356
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G IK+V DE + K +P G E G NV GY + P T+ +D
Sbjct: 357 DGYAAAGVEIKVV--DE-----ARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA--LD 407
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615
E G W+Y+GD+ ++ G ++I RKKDI+ ++ GE IS +VE D ++ H
Sbjct: 408 EEG--WYYSGDLCRMDEAGYIKITGRKKDII-VRGGENISSREVE---------DILLQH 455
Query: 616 ADPFHNYCV-------------ALVVPSHKALEKWAHEASIKYEDLSE-LCNK 654
H+ CV A VV A S+ E++ K
Sbjct: 456 PK-IHDACVVAMPDERLGERSCAYVVLK-------APHHSLTLEEVVAFFSRK 500
|
Length = 547 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-14
Identities = 130/677 (19%), Positives = 240/677 (35%), Gaps = 130/677 (19%)
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
P G ++ ++E+S H R LG+ G+ EW TYG V
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS------------------ESGESEWLTYGTV 463
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
RA SGL+ G + E I C T + + +G+ + +
Sbjct: 464 DARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMR 520
Query: 197 SL-NETQVTTLICDSKQLKK-LSAVSSSLKTIKNVIYF---ENDGSEKDSGVSGGISNWT 251
+L +E ++ + D + L+ S L+T+ F ++ +D + T
Sbjct: 521 TLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNI-------T 573
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY-----TSGSTGLPKGVMITHGNIVATAAA 306
+ + VE+ G+ PV P V Y TS S V +TH +++
Sbjct: 574 LIPYEFVEQKGRLCPV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVL---RD 629
Query: 307 IKTLI-----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
I TL+ P+ + + + + P A + + +GS + D + +
Sbjct: 630 ISTLVMTGVLPSSFKKHLMVHFTPFAMLFN------RVFVLGLFAHGSAVATVDAAHLQR 683
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
K +PT++ A P++F R + + E + LF ++ R +
Sbjct: 684 AFVK-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLIN---- 734
Query: 422 GAWGLER---MLWDAIVFKSVRAVLGGRIRFMI-CGGAPLSADS-QRFINICMGAPIGQA 476
+ R L I F++ + +LGG + ++ C ++ S I++C + +
Sbjct: 735 ----IHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLREV 790
Query: 477 YGLTETCAGSTFSEWDDPSVGRV---GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
+ L PS G G P P + L +DE P +G
Sbjct: 791 FFL--------------PSEGVFCVDGTPAPSLQVDLEPFDE----------PSDGAGIG 826
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD---IGQVYPDGCLEIIDRKKDIVKLQH 590
+ K E + W +G P G L +
Sbjct: 827 QLVLA--------KKGEPRRTLPIAAQWKRDRTLRLLGP--PLGILLPV----------A 866
Query: 591 GEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALE-KW--AHEASIKYED 647
EY+ ++E S YV++I ++ADP +A+V P+ +E +W +H
Sbjct: 867 YEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGP 925
Query: 648 LSELCNKAE----AVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703
+ E A + + + +AK L +P + L P + + +T KI
Sbjct: 926 -ARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKI 984
Query: 704 KREQLKAKFKDDLQMLY 720
+R+ + + F ++ Y
Sbjct: 985 RRDAVHSYFSSVIERFY 1001
|
Length = 1452 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCC 506
R+ +CG APL + R G I + YGLTE S+ + D +G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 507 YIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
+++V D+ G D + G + + G NV +GY ++ +++ W TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLE-AAHNKGLW-LEDG---WLNTG 450
Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
D+G++ DG + R KD++
Sbjct: 451 DLGRIDADGYFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 80/286 (27%), Positives = 118/286 (41%), Gaps = 58/286 (20%)
Query: 447 IRFMICGGAP----LSADSQRFINICMGAPIGQAYGLTETCAGSTF----SEWDDPSV-- 496
+ M G AP L A S++ G + YGL+ET ST EWD
Sbjct: 313 VHVMTAGAAPPPSVLFAMSEK------GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEE 366
Query: 497 -GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSE 550
R+ YI L D KT KP+P GEIV+ G V GY NP E
Sbjct: 367 QARLNARQGVRYIGLEGLDVVDTKTM-KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEE 425
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
+ G WF++GD+G +PDG +EI DR KDI+ + GE IS +VE + +
Sbjct: 426 AF---ANG--WFHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYT----- 474
Query: 611 NIMIHADPFHNYCVALVVPSHKALEKWAHE--ASIKYEDLSELCNKAEAVNEVQQALSKV 668
H VA + E+W A + + + ++A ++ + +
Sbjct: 475 ----HPAVLEASVVA------RPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRE- 523
Query: 669 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714
+L + +P + P P TA KI++ L+AK K+
Sbjct: 524 ----RLPAYWVPKSVVFGPLP-------KTATGKIQKHVLRAKAKE 558
|
Length = 567 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 26/213 (12%)
Query: 123 LHLGDYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
L GD W TY E D A + A+ L++ G R A L + + + C R
Sbjct: 30 LVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAV 87
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
V + L + L + L+ + + D A + L V
Sbjct: 88 HVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP----VDTLILSLVLGGR 143
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
GG W F++ + G + D L + +A I+YTSG+ LPKG M+TH ++
Sbjct: 144 EAPGG---WL--DFADWAEAGSVAEPDVELADDD-LAQILYTSGTESLPKGAMLTHRALI 197
Query: 302 A------TAAAIKTLIPNPGRSDVYLAYLPLAH 328
A A + D+ L LPL H
Sbjct: 198 AEYVSCIVAGDMSA-------DDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-13
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 9/166 (5%)
Query: 181 TVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA--VSSSLKTIKNVIYFENDGSE 238
V + + E AL ++ + Q+ T+I K L+KL L VIY E D
Sbjct: 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKA 749
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
K S V ++ + L + A I+++SGS G PKGVM++H
Sbjct: 750 KISKVDK-LTALLAARLLPARLLKRLYGPTFKPDD---TATIIFSSGSEGEPKGVMLSHH 805
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGC 343
NI++ I + N DV L+ LP H L + L G
Sbjct: 806 NILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI 850
|
Length = 1146 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
+R +C GAP+ +GA I A+G+TE A + D + G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
P +++V D P+P G+I V G + GY P ++ D G
Sbjct: 373 PGVEVRVVDAD-------GAPLPAGQIGRLQVRGCSNFGGYLKRP----QLNGTDADG-- 419
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
WF TGD+ ++ DG + I R KD++ ++ GE I + ++EA L
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALL 461
|
Length = 547 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
+ G +++A ++Q+ ++ P K V + G + TY +
Sbjct: 19 YWGDASLADYWQQTARAMPD-----------KIAVVDNHGASY-----------TYSALD 56
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
A A+ L+ G R A E+ I + C + V + S E L+
Sbjct: 57 HAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWV 116
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
LN+ Q ++ + + + + L ++ ++ +
Sbjct: 117 LNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-------------T 163
Query: 253 SSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310
SS S + + P+ ++ + +A +++TSG+ GLPKGVM+TH NI+A+ A L
Sbjct: 164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL 223
Query: 311 IPNPGRSDVYLAYLPLAH 328
N DV++ PL H
Sbjct: 224 --NLTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 7e-13
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 469 MGAPIGQAYGLTETCAGSTFSEWDD-----PS------VGRVGPPVPCCYIKLVSWDEGG 517
+G + AYGLTE F EW D P R G + + L D
Sbjct: 323 LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI----LGLADVDVKN 378
Query: 518 YKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
+T + +PR GEIV+ G ++ GY NP TSE +K W TGD+G ++P
Sbjct: 379 KETQ-ESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-----HGWLNTGDVGVIHP 432
Query: 573 DGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
DG +EI DR KDI+ + GE IS +VE L
Sbjct: 433 DGHVEIKDRSKDII-ISGGENISSVEVENVL 462
|
Length = 579 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 9e-13
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRV 499
+ + GGAP +A+ + G P+ +G++E AG+ F D V G
Sbjct: 252 RHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAGAA 308
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
G P P ++V D+ G +D P +P GE+++ G N++ GY+ P T+ +
Sbjct: 309 GIPTPTVQTRVV--DDQG---NDCPAGVP-GELLLRGPNLSPGYWRRPQATARAF--TGD 360
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
G WF TGDI + DG ++DRKKD+ + GE + ++EA L
Sbjct: 361 G--WFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVL 403
|
Length = 488 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)
Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+Y E+ + A A L G R + + ++ IA+ R + VV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI------YFENDGSEK----- 239
E+ L H + ++ I S+ K++ +L +++VI Y +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWL 155
Query: 240 ------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGV 293
+ GG+ W E L P + +AV+ YTSG+TG+PKG
Sbjct: 156 RAEPPLQALAPGGVVAWK-------EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGC 208
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330
M TH ++A A L N V LA LPL HV
Sbjct: 209 MHTHRTVMANAVG-SVLWSNSTPESVVLAVLPLFHVT 244
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 113/588 (19%), Positives = 193/588 (32%), Gaps = 129/588 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ RA A L+ G + I E E + + V +
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPR 4637
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + + ++ L+ S L++L + G+++
Sbjct: 4638 ERLAYMMEDSGAALLLTQSHLLQRLP-------------------------IPDGLASLA 4672
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+ + E P P N +A ++YTSGSTG PKGV ++HG++V A
Sbjct: 4673 LDRDEDWEGFPAHDPAVRLHP-DN-LAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGER- 4729
Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
D L ++ + + + E + L G+++ + D S + ++
Sbjct: 4730 YELTPDDRVLQFMSFS--FDGSHEGLYHPLIN------GASVVIRDDSLWDPERLYAEIH 4781
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
+ T++ P ++ E E G
Sbjct: 4782 EHRVTVLVFPPVYLQQLAEH----AERDGEPPS--------------------------- 4810
Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF 488
+R GG ++ S + YG TET
Sbjct: 4811 -----------------LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETT----- 4848
Query: 489 SEWDDPSVGRVGPPVPC----CYIKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTA 539
+ + C I + GY + P+P GE+ +GG V
Sbjct: 4849 ---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVAR 4905
Query: 540 GYFNNPGKTSEVY---KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
GY P T+E + G + TGD+ + DG ++ + R VK++ G I L
Sbjct: 4906 GYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIR-GFRIEL 4964
Query: 597 GKVEAALISSDYVDNIMIHAD--PFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNK 654
G++EA L V ++ A V VVP AL +
Sbjct: 4965 GEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPAL-------------ADADEAQ 5011
Query: 655 AEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAAL 701
AE +E++ AL +L ++ +PA + + P TP L AL
Sbjct: 5012 AELRDELKAAL-----RERLPEYMVPAHLVFLARMPLTPNGKLDRKAL 5054
|
Length = 5163 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 49/195 (25%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINIC--MGAP---IGQAYGLTETCAGSTFS--------- 489
+R++I G + A +RF+ + G P I A+G++ETC+G T+S
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348
Query: 490 ---------------EWDDPSVGR---VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI- 530
D P +G P+P I++V DE +P GE+
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV--DE-----DGALLPEGEVG 401
Query: 531 --VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
V G VT+GY+ NP +E + D G WF TGD+G ++ DG L I R+KD++ +
Sbjct: 402 RLQVRGPTVTSGYYRNPEANAEAFTED--G--WFRTGDLGFLH-DGRLTITGREKDMIII 456
Query: 589 QHGEYISLGKVEAAL 603
+G ++EAA+
Sbjct: 457 -NGVNYYNHEIEAAV 470
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 91/464 (19%), Positives = 159/464 (34%), Gaps = 94/464 (20%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +++ + A GL+ G A+LA + +A + ++ + +
Sbjct: 76 TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L V L+ D + LSA+ L ++ +D S T
Sbjct: 136 PQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS---------T 186
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+ ++ +P P + G VI+ TSG+TG PKG + +A A + + +
Sbjct: 187 DETLDDLIAGSSTAP--LPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRV 243
Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK-KGTKGDVSV 370
P L P+ H A A+ GST+ + + + T D++
Sbjct: 244 PFRAGETTLLP-APMFHATGWA------HLTLAMALGSTVVL---RRRFDPEATLEDIAK 293
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
K T + VP + R+ + + +V K +
Sbjct: 294 HKATALVVVPVMLSRILD-LGPEVLAKYDTS----------------------------- 323
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE--TCAGST 487
++ + G+ LS + + R + G + YG TE +T
Sbjct: 324 ---------------SLKIIFVSGSALSPELATRALEA-FGPVLYNLYGSTEVAFATIAT 367
Query: 488 FSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFN 543
+ + P VG P +K+ + +PRG I VG GY +
Sbjct: 368 PEDLAEAPGT--VGRPPKGVTVKI-------LDENGNEVPRGVVGRIFVGNGFPFEGYTD 418
Query: 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD-IV 586
K +D G+ +GD+G DG L + R D IV
Sbjct: 419 GRDKQ----IID--GL--LSSGDVGYFDEDGLLFVDGRDDDMIV 454
|
Length = 549 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 5e-12
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DP+ P++ + +A ++YTSGSTG PKGVM+ H +V A +
Sbjct: 66 PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
Query: 308 KTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAG 342
+ D L + A V E+ L +G
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFP---PLLSG 159
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 70/258 (27%), Positives = 108/258 (41%), Gaps = 53/258 (20%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDP------SVGRV 499
+R I GAP + R + M + AYG+TET S + D +VGR
Sbjct: 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRT 378
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
P + K+V D + GE+ G++V GY+NNP T+E +DE G
Sbjct: 379 QPHLEV---KVVDPDGATVPRGEI----GELCTRGYSVMKGYWNNPEATAES--IDEDG- 428
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619
W +TGD+ + G + I+ R KD++ ++ GE I ++E L + V ++ + P
Sbjct: 429 -WMHTGDLATMDEQGYVRIVGRSKDMI-IRGGENIYPREIEEFLFTHPAVADVQVFGVPD 486
Query: 620 HNY---CVALVV--PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
Y VA V P H A E E+L E C A++
Sbjct: 487 EKYGEEIVAWVRLHPGHAASE----------EELREFCK------------------ARI 518
Query: 675 DKFEIPAKIKLMPE-PWT 691
F++P + + E P T
Sbjct: 519 AHFKVPRYFRFVDEFPMT 536
|
Length = 558 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-11
Identities = 74/294 (25%), Positives = 120/294 (40%), Gaps = 52/294 (17%)
Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
+ A ++ ++CGG L AD Q+ + G P+ YG TE T + +
Sbjct: 3302 LEEEDAHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEG 3359
Query: 496 VGR--VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSE 550
+G P+ ++ S +P+P G E+ +GG + GY N PG T+E
Sbjct: 3360 KDAVPIGRPIANRACYILD-------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412
Query: 551 VYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ D G + TGD+ + DG +E I R VK++ G I LG++EA L+ +
Sbjct: 3413 RFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIR-GFRIELGEIEARLLEHPW 3471
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKV 668
V ++ A VA VVP +A ++++AL
Sbjct: 3472 VREAVVLAVDGRQL-VAYVVPEDEA-------------------------GDLREALKAH 3505
Query: 669 AKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721
KA+ L ++ +PA + + P TP K+ R+ L LQ Y
Sbjct: 3506 LKAS-LPEYMVPAHLLFLERMPLTPNG-------KLDRKALPRPDAALLQQDYV 3551
|
Length = 5163 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 256 SEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
+E+L P P P++ + A+++ TSGSTG+PK V++TH NI+A +A +
Sbjct: 147 LAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAG-TVQVNGF 205
Query: 315 GRSDVYLAYLPLAHVLELAAESIM-LCAGCA 344
DV L ++PL HV + + + GC
Sbjct: 206 TPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQ 236
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-11
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 20/178 (11%)
Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGR----- 498
+++ ++ APL+ + F G + +AYGLTE +C T DP G
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHG---DPEKGHGIAKK 360
Query: 499 --VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
VG +P +K + D G + P GE+ V V GY+NN +T +DE
Sbjct: 361 NSVGFILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEETDRT--IDE 415
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
G W +TGDIG + DG + I+DR K+++K + G ++ ++EA L++ V++ +
Sbjct: 416 DG--WLHTGDIGYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVEDAAV 470
|
Length = 546 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR- 527
G PI + YGL+ET +T + D G +G P+P + + D+ G +D P+
Sbjct: 352 GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIR--DDDG---NDLPLGEP 406
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GEI + G V AGY+N P +T++V D +F TGD+G + G +I+DRKKD++
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADG----FFRTGDVGVMDERGYTKIVDRKKDMI 461
|
Length = 557 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GE+ +GG V GY+ +P T+E + G + TGD+G+ PDG +E + R VK
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 588 LQHGEYISLGKVEAAL 603
++ G + LG++EAAL
Sbjct: 387 IR-GYRVELGEIEAAL 401
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 445 GRIRFMICGGAPLSA-DSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPP 502
R ++ G A L R + P+ + YG+TET ST ++ + G VG P
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPV-ERYGMTETLITLSTRAD-GERRPGWVGLP 298
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+ +LV ++GG D GE+ V G + GY N P T+ + D WF
Sbjct: 299 LAGVETRLVD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAFTADG----WF 352
Query: 563 YTGDIGQVYPDGCLEIIDRKK-DIVKLQHGEY-ISLGKVEAALI 604
TGD+ V PDG I+ R+ D++K G Y I G++E AL+
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIKS--GGYRIGAGEIETALL 394
|
Length = 471 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 10/203 (4%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ + + FA+ L G R A+ C ++ I F G + V + E
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISN 249
L + LN+ L+ + + V + SL+ + + +E + +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRA 179
Query: 250 WTVSS------FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
+++ + P+ P P+ + +A + YT G+TG+PKG T ++V T
Sbjct: 180 PRLAAAGAIDLLPALRACTAPVPLPP--PALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 304 AAAIKTLIPNPGRSDVYLAYLPL 326
AAA + G V+L++LP
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 9e-11
Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 29/184 (15%)
Query: 441 AVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS-----EWDDP 494
L G +R ++ GG LS +R + C G + YG TE +TFS D
Sbjct: 237 EALAG-LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE---NTTFSTCHVITRLDE 292
Query: 495 SVGRV--GPPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
+ + G P+P YI DE G +P+P GE+ VGG + GY N P
Sbjct: 293 AADSIPIGRPIPNTTVYI----LDEEG-----QPVPIGVPGELYVGGDGLALGYLNRPEL 343
Query: 548 TSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T+E + D G + TGD+ + PDG +E + R VK++ G I LG++E AL+
Sbjct: 344 TAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGEIEQALLQ 402
Query: 606 SDYV 609
V
Sbjct: 403 HPGV 406
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 477 YGLTETCAGSTFSE-----WDDPSVGRVGPPVP--CCYIKLVSWDEGGYKTSDKPMPR-- 527
YG +E ST++E PS+GR P+ Y+ D +P+P
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTPSIGR---PLAGTQAYV----LDAHL-----QPVPVGV 293
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC---WFY-TGDIGQVYPDGCLEIIDRK 582
GE+ +GG V GY P T+E + + Y TGD+ + DG LE + R
Sbjct: 294 PGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRI 353
Query: 583 KDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPS 630
D VK++ G I LG++EAAL S V + I VA +V
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 63/198 (31%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ + A L G R A+ + ++ IA+ R VV + E
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L H L DSG I
Sbjct: 63 AELEHIL----------------------------------------NDSGARVLIV--- 79
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
SE++ VAVI YTSG+TGLPKG M TH ++ATAAA
Sbjct: 80 ---GSELDD----------------VAVIPYTSGTTGLPKGCMHTHRTVLATAAASA-AW 119
Query: 312 PNPGRSDVYLAYLPLAHV 329
V LA+LPL HV
Sbjct: 120 SGLTPDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 25/124 (20%)
Query: 476 AYGLTETCAGSTFSEW---DD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
A+G+TET TF+ DD P VG PVP K+ ++ G + +P
Sbjct: 359 AWGMTETHTCDTFTAGFQDDDFDLLSQPVF--VGLPVPGTEFKICDFETG------ELLP 410
Query: 527 ---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GEIVV ++ GY+N P T+E G W +TGDIG++ G L + R+K
Sbjct: 411 LGAEGEIVVRTPSLLKGYWNKPEATAEAL---RDG--WLHTGDIGKIDEQGFLHYLGRRK 465
Query: 584 DIVK 587
+++K
Sbjct: 466 EMLK 469
|
Length = 567 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
+R ++ G PL+ + + G PI YG TET + G +G P P
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAP 256
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDER 557
+ ++ D+ G + P G+I V G F GY +P KT + D
Sbjct: 257 GYRVAII--DDEGNEL--PPGEEGDIAVRVKPRPPGLF---RGYLKDPEKTEATIRGD-- 307
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
W+ TGD DG + R D++K G I +VE+ALI
Sbjct: 308 ---WYLTGDRAIKDEDGYFWFVGRADDVIK-SSGYRIGPFEVESALI 350
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 447 IRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFS-------EWDDPSVGR 498
IR ++ G APL + + + A +GQ YG+TE AG + E G
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLAMCLAFAKEPFPVKSGS 357
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G V +K+V + G +PR GEI + G + GY N+P T+ +D
Sbjct: 358 CGTVVRNAELKIVDPETG------ASLPRNQPGEICIRGPQIMKGYLNDPEATANT--ID 409
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+ G W +TGDIG + D L I+DR K+++K + G ++ ++EA LIS
Sbjct: 410 KDG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIS 456
|
Length = 537 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 46/231 (19%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVT---IYSS 188
TY +V + A+GL G +L C E+ +AF G R+ T Y+
Sbjct: 52 TYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP 111
Query: 189 LGEDALIHS-LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK----DSGV 243
A I + +I S + KL D D
Sbjct: 112 ----AEIAKQAKASGAKLIITQSCYVDKLKG-------------LAEDDGVTVVTIDDPP 154
Query: 244 SGGISNWTVSSFSEVEKLGKR-SPVDP-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
G + ++ E E SP D +LP Y+SG+TGLPKGVM+TH +V
Sbjct: 155 EGCLHFSELTQADENELPEVEISPDDVVALP---------YSSGTTGLPKGVMLTHKGLV 205
Query: 302 ATAAAIKTLIPNP----GRSDVYLAYLPLAHVLELAAESIMLC---AGCAI 345
T+ A + NP DV L LP+ H+ L S++LC G AI
Sbjct: 206 -TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSL--NSVLLCGLRVGAAI 253
|
Length = 537 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 188 SLGEDALIHSLNETQVTTLICDSKQL---KKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
S G ++ + QV T + S+ +L + +L+ +IY E+ V
Sbjct: 715 SAGIANILSACKAAQVKT-VLTSRAFIEKARLGPLIEALEFGIRIIYLED--------VR 765
Query: 245 GGISNWT------VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
I F V R P DP AVI++TSGS G PKGV+++H
Sbjct: 766 AQIGLADKIKGLLAGRFPLV-YFCNRDPDDP--------AVILFTSGSEGTPKGVVLSHR 816
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
N++A A + I D LP+ H L ++
Sbjct: 817 NLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVL 855
|
Length = 1140 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 23/226 (10%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L G W TY E A + A L G R A++ +E+ F GC
Sbjct: 40 LVFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V I ++L L H L + L+ ++ L L A + V
Sbjct: 99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW------------ 146
Query: 243 VSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI- 300
+ ++ +V + +S +P + A I+YTSG+TG KGV H
Sbjct: 147 LLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY 206
Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGC 343
+A ++ G DV LPL H L A L AG
Sbjct: 207 WWGRNSAEDLEI-----GADDVLYTTLPLFHTNALNAFFQALLAGA 247
|
Length = 542 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
+A I+YTSGSTG PKGVM++H N+ A A +I + D LA LP +
Sbjct: 4 LAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLEL-TEDDRILAVLPFSF 54
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA 218
A+L E E+ A+ G + V + + L HSLN LI + ++
Sbjct: 91 ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEE 150
Query: 219 VSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGV- 277
+ L ++ + D + ++ +P S++GV
Sbjct: 151 ARADL-ARPPRLWVAGGDTLDDPE-----------GYEDLAAAAAGAPTTN-PASRSGVT 197
Query: 278 ----AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA 333
A +YTSG+TGLPK +++H + L+ DV LPL H
Sbjct: 198 AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYH----- 251
Query: 334 AESIMLCAGCAIGYGSTL 351
+ + G+TL
Sbjct: 252 NTGGTVAWSSVLAAGATL 269
|
Length = 600 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-- 312
F++ G PV + P + VAV+ YT G+TG+ KG M+TH N+VA + L+
Sbjct: 187 FNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSN 246
Query: 313 -NPGRSDVYLAYLPLAHV 329
N G ++ +A LPL H+
Sbjct: 247 LNEGC-EILIAPLPLYHI 263
|
Length = 562 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 446 RIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPP 502
+R + G AP S R + A I A+G TE + +D +G VG
Sbjct: 291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKV 350
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+P ++V DE +D P+ GEIV + +GY+NNP T+E + G W
Sbjct: 351 IPTVAARVV--DE---NMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF---AGG--W 400
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
F++GD+ + +G + ++DRKKD++ + GE I +VE L S
Sbjct: 401 FHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLAS 443
|
Length = 542 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 447 IRFMICGGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTF------SEWDDPSVGRV 499
+R++I GAP+ AD +R + +G + Q +GL E T D P R+
Sbjct: 282 LRYVIYAGAPMYRADQKRALAK-LGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDA-RI 339
Query: 500 GPPVPCCY----IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G C + +++ D+ G + P GEI V G V AGY+NNP ++ ++
Sbjct: 340 GT---CGFERTGMEVQIQDDEGREL--PPGETGEICVIGPAVFAGYYNNPEANAKAFRDG 394
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
WF TGD+G + G L I R D+ YIS G
Sbjct: 395 -----WFRTGDLGHLDARGFLYITGRASDM-------YISGG 424
|
Length = 528 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELA 333
+ A+I++TSG+TG PKGV +TH N++A+A I K+ P SD L +PL H+ L
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP--SDRCLNVMPLFHIHGLI 59
Query: 334 AESIM--LCAGCAI 345
S++ L AG ++
Sbjct: 60 V-SLLATLLAGGSV 72
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 51/177 (28%)
Query: 447 IRFMICGGAPLS-ADSQRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP---- 494
+RF + G P+ AD + ++ GA G AYG+ E +FS
Sbjct: 278 LRFALNGAEPIDPADVEDLLD--AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVD 335
Query: 495 ----------------------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
+ +GPP+P +++V DE G + +P G
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV--DEDG-----QVLPPRGVGV 388
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
I + G +VT GY G + D G W TGD+G + +G + + R KD++
Sbjct: 389 IELRGESVTPGYLTMDG---FIPAQDADG--WLDTGDLGYLTEEGEVVVCGRVKDVI 440
|
Length = 545 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 17/207 (8%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
GD + TY E +DR AS L G A+LA A G +V +
Sbjct: 26 GDRRY-TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L D + LN ++ L D + L + L T K +I E + S
Sbjct: 85 NTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143
Query: 246 GISNWTVSSFSEVEKL---GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIV 301
+ E L G P+ + + YTSG+TG PKGV+ TH G +
Sbjct: 144 EG---------DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYL 194
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAH 328
+ + VYL LP+ H
Sbjct: 195 NALGNV--IEWGMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DPS P++ + +A I++TSGSTG PKGV I+H N+ + +
Sbjct: 70 PLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWM 129
Query: 308 KTLIPNPGRSDVYLAYLPL 326
DV+ P
Sbjct: 130 VEDFDLTEG-DVFSNQAPF 147
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 34/174 (19%)
Query: 444 GGRIRFMICGGAP---LSADSQRFINICMGAPIGQAYGLTET---CAGSTFSEWDDPSVG 497
R+R + G P +A +RF G + YG TET A + G
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF-----GVDLLDGYGSTETNFVIAVT----HGSQRPG 343
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGG---FNVTAGYFNNPGKTSEV 551
+G P ++V DE D+ +P GE+++ F GYF P KT E
Sbjct: 344 SMGRLAPGFEARVV--DEH-----DQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
++ WF+TGD DG +DR KD ++ + GE IS +VE L+S
Sbjct: 397 WR-----NLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLS 444
|
Length = 542 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
V L P+DP ++ +A++ TSGSTG PK V ITHGN+ A A A+
Sbjct: 134 TVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVE 193
Query: 317 SDVYLAYLPLAH 328
+DV +++LPL H
Sbjct: 194 TDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI---YSS 188
TY E+ +RA A L+ G I A +E+ A G F+ V + Y
Sbjct: 30 TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV- 88
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
ED L + L+++ L+ + + +++ V L ++ ++ E DGS D G +
Sbjct: 89 --EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVE-DGSGNDLL-PGAVD 144
Query: 249 NWTVSSFSEVEKL-GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
+ E+ G+RSP D ++YT G+TG+PKGVM +I
Sbjct: 145 YEDALAAGSPERDFGERSPDD---------LYLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 30/206 (14%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEW----DDPSVGRVGP 501
+R ++CGG L ++ R + + YG TET T W D GR
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTH--WTCRRKDLE-GRDSV 1892
Query: 502 PV--PCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY---- 552
P+ P + D S P+P GE+ +GG + GY N P T+E +
Sbjct: 1893 PIGQPIANLSTYILDA-----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADP 1947
Query: 553 --KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V R + TGD+ + DG +E + R VK++ G I LG++EA L V
Sbjct: 1948 FGTVGSR---LYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLREQGGVR 2003
Query: 611 N--IMIHADPFHNYCVALVVPSHKAL 634
++ VA VVP+ L
Sbjct: 2004 EAVVIAQDGANGKQLVAYVVPTDPGL 2029
|
Length = 3956 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPPVP 504
R+R + GG L + + +G + + YG TE + G +G PVP
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVP 267
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA-------GYFNNPGKTSEVYKVDER 557
+ +V D+ G +P+P GE VG V GY+NNP T+ + D
Sbjct: 268 GHEVAVV--DDAG-----RPVPPGE--VGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-- 316
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W TGD+G+ DG L R D++K G I ++E L+ V
Sbjct: 317 ---WLLTGDLGRRDADGYLWFKGRADDVIK-SSGYRIGPAEIEECLLKHPAV 364
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 16/174 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+YGE+ + + L G + R +L V++ IAF G R I V + + L
Sbjct: 32 SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D + L +++ + + L + A +++ + V G
Sbjct: 92 DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV------------VVGRPEAGE 139
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
V E L S +Q + A +Y+SGSTG+PKGV+ TH N TA
Sbjct: 140 VQL---AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
F + + G+ + P + +AV+ YT G+TGL KG M+THGN+VA ++ +
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245
Query: 314 PGR---------SDVYLAYLPLAHVLELAAESI-MLCAG 342
G +V +A LPL H+ A + M+ +G
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSG 284
|
Length = 562 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 47/204 (23%), Positives = 68/204 (33%), Gaps = 44/204 (21%)
Query: 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
Y W+ + DR A GL+ G R I A C EW + R +V I
Sbjct: 46 YTWRQLADAVDR---LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102
Query: 188 SLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT-------------IKNV 229
+ L ++L ++ V +IC S L + L ++ V
Sbjct: 103 AYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGV 162
Query: 230 IYFENDGSEKDSGVSGGISNW--------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM 281
+ G W TVS + E+ DP I
Sbjct: 163 VSL-------APAPPPGFLAWHELQARGETVSREALAERQASLDRDDP--------INIQ 207
Query: 282 YTSGSTGLPKGVMITHGNIVATAA 305
YTSG+TG PKG ++H NI+
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGY 231
|
Length = 558 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 38/170 (22%), Positives = 54/170 (31%), Gaps = 30/170 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +RA A L G A+L E E +A + V + +
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L L ++ L+ + L L+ I D
Sbjct: 74 ERLAFMLEDSGARVLL-TDESLAPLARADQLPLVILEEELDAEDAGPP------------ 120
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
VD A +MYTSGSTG PKGV + H +V
Sbjct: 121 ------------APAVDADDL-----AYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 32/215 (14%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L LGD TYG++ DR + G A+L+ E +A +
Sbjct: 31 LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89
Query: 183 VTIY--SSLGEDALIHSLNETQVTTLICDSKQLKK----LSAVSSSLKTIKNVIYFENDG 236
++ SL + A + L + ++TLI D + L A SLK +
Sbjct: 90 TALHPLGSLDDHAYV--LEDAGISTLIVDPAPFVERALALLARVPSLKHV---------- 137
Query: 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
++ G V + K G V +LP +A + YT G+TG PKGVM T
Sbjct: 138 ------LTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD--IAGLAYTGGTTGKPKGVMGT 189
Query: 297 HGNIVATAAAIKTL--IPNPGRSDVYLAYLPLAHV 329
H +I A P R +L PL+H
Sbjct: 190 HRSIATMAQIQLAEWEWPADPR---FLMCTPLSHA 221
|
Length = 524 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESI 337
I+YTSG+TG PKGV++TH ++ A L+ DV L LPL H+ + +
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPD-DVLLTPLPLFHINAQAYSVYAA 144
Query: 338 MLCAGCAI 345
+L +
Sbjct: 145 LLVGATLV 152
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 32/219 (14%)
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST 487
L + + GG + + ++ + YG TE T
Sbjct: 3337 YLQQFAEDAGGAD--CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394
Query: 488 FSEWDDPSVGRVGPP-VP--------CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGF 535
W P P Y+ P+P G E+ +GG
Sbjct: 3395 L--WKCGGDAVCEAPYAPIGRPVAGRSIYV---------LDGQLNPVPVGVAGELYIGGV 3443
Query: 536 NVTAGYFNNPGKTSEVYKVDERGMC---WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592
+ GY P T+E + D + TGD+ + DG +E + R VK++ G
Sbjct: 3444 GLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GF 3502
Query: 593 YISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVVP 629
I LG++EA L+ V ++ A VA VVP
Sbjct: 3503 RIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVP 3541
|
Length = 3956 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 26/127 (20%)
Query: 472 PI-GQAYGLTETCAGSTFS-----EWDDPSVGRV---GPPVPCCYIKLVSWDEGGYKTSD 522
PI Q YG TE A + + D R+ G P P + L+ DE
Sbjct: 307 PIFAQYYGQTE--APMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALL--DE-----DG 357
Query: 523 KPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
+ + + GEI V G V GY+N P +T+E ++ W +TGD+ + DG I+
Sbjct: 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDG-----WLHTGDVAREDEDGFYYIV 412
Query: 580 DRKKDIV 586
DRKKD++
Sbjct: 413 DRKKDMI 419
|
Length = 524 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
F+ CG ++ + A I YG TE T + + + P
Sbjct: 257 YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY-PR 315
Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
+P + K L DE G + +GEIV+ G +V+ GY NNP KT+E + E G
Sbjct: 316 LPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYLNNPEKTAEAFFSHE-G 372
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI--HA 616
+ TGD G + DG L R +KL HG I L +E L S Y+++ ++
Sbjct: 373 QPAYRTGDAGTI-TDGQLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKY 430
Query: 617 DPFHN--YCVALVVPSHKALEK-WAHEASIKYEDLSE 650
+ H Y +A +VP + EK + +IK ++L +
Sbjct: 431 NKDHKVEYLIAAIVPETEDFEKEFQLTKAIK-KELKK 466
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
VA+++YTSG+TG PKGVM TH ++A + + DV L PLAH+
Sbjct: 95 VALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL-GLTPDDVVLMPSPLAHI 146
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 23/88 (26%)
Query: 266 PVDPSLPSQ-------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
P+DPS P + + A ++YTSGSTG PKGV+ITH NI A
Sbjct: 71 PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130
Query: 307 IKTLIPNPGRSDVYLAYLPLA---HVLE 331
++ D L + +A +LE
Sbjct: 131 EGAILGI-RPGDRVLQFASIAFDVSILE 157
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 127 DYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT---- 181
W TY E F+ A GL+ G R I A EW Q T
Sbjct: 41 GLRW-TYRE-FNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW------VLTQFATAKIG 92
Query: 182 --VVTIYSSLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT--------- 225
+VTI + L ++LN++ LI DS + L ++ L T
Sbjct: 93 AILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSA 152
Query: 226 ----IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP------SLPSQN 275
++ VI+ G EK G+ +F E+ LG+ +L +
Sbjct: 153 RLPELRRVIFL---GDEKHPGML---------NFDELLALGRAVDDAELAARQATL-DPD 199
Query: 276 GVAVIMYTSGSTGLPKGVMITHGNIV 301
I YTSG+TG PKG +TH NI+
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 521 SDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
+ GEIV + GY+++P KT+E ++ WF++GD+G + +G +
Sbjct: 358 DGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGG-----WFHSGDLGVMDEEGYIT 412
Query: 578 IIDRKKDIVKLQHGEYISLGKVEAAL 603
++DRKKD++K GE ++ +VE AL
Sbjct: 413 VVDRKKDMIK-TGGENVASREVEEAL 437
|
Length = 523 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 74/283 (26%), Positives = 115/283 (40%), Gaps = 40/283 (14%)
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS 489
A++ ++ R L R ++CGG L D R + GA + YG TET G +
Sbjct: 758 LQALL-QASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTY 816
Query: 490 EWDDPSVGRVGPPV--PCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNN 544
E D P+ P + L D P+P GE+ +GG + GY
Sbjct: 817 ELSDEERDFGNVPIGQPLANLGLYILD-----HYLNPVPVGVVGELYIGGAGLARGYHRR 871
Query: 545 PGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 601
P T+E + D G + TGD+ + DG +E + R VK++ G I LG++EA
Sbjct: 872 PALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIR-GFRIELGEIEA 930
Query: 602 ALISSDYVDNIMIHADP--FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVN 659
L++ V ++ A P VA +VP+ A + +
Sbjct: 931 RLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVA----------------DGAEHQATRD 974
Query: 660 EVQQALSKVAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAAL 701
E++ L +V L + +PA + L+ P TP L AL
Sbjct: 975 ELKAQLRQV-----LPDYMVPAHLLLLDSLPLTPNGKLDRKAL 1012
|
Length = 3956 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 47/186 (25%), Positives = 69/186 (37%), Gaps = 57/186 (30%)
Query: 445 GRIRFMICGGAPLSAD-----SQRFINICMGAPIG---QA----YGLTETCAGSTFSEWD 492
R G P+ AD ++RF AP G +A YGL E +
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERF------APAGFRPEAFLPCYGLAEATLAVSGGPPG 323
Query: 493 DPSVGR---------------------------VGPPVPCCYIKLVSWDEGGYKTSDKPM 525
V G P+P +++V E +P+
Sbjct: 324 AGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPL 377
Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEV--YKVDERGMCWFYTGDIGQVYPDGCLEIID 580
P GEI V G +V AGY+N P T+E ++ W TGD+G ++ DG L +
Sbjct: 378 PDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTG 436
Query: 581 RKKDIV 586
R KD++
Sbjct: 437 RLKDLI 442
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
G G PVP +KLV DE G + +D + GE+ V G + AGY+N KT E + +
Sbjct: 330 GTSGKPVPGYEVKLV--DEDGEEVADGEI--GELWVRGDSSAAGYWNRREKTRETFVGE- 384
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W TGD DG R D++K+ G ++S +VE AL+ V
Sbjct: 385 ----WTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAV 432
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 55/254 (21%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA--GSTFSEW-DDPSVGRVGPPV 503
+R +I AP AD +R + G I + YG TE+ A +T + P G VG
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHP--GTVGKAA 330
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI------VVGGFNVTAGYFNNPGKTSEVYKVDER 557
P ++ V DE G +P+P+GEI + G + T Y N P K +E+ +R
Sbjct: 331 PGAELRFV--DEDG-----RPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEI----DR 377
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD 617
G + +GD+G + DG L + DRK+D+V + G I ++EA L HA
Sbjct: 378 GG-FITSGDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVL-----------HAV 424
Query: 618 PFHNYCVALVVPSHKALEKWAHEASIKYEDLSE-LCNKAEAVNEVQQALSKVAK--AAKL 674
P + C +P + E L E + + A+L
Sbjct: 425 PGVHDCAVFGIPD---------------AEFGEALMAVVEPQPGATLDEADIRAQLKARL 469
Query: 675 DKFEIPAKIKLMPE 688
+++P I++M E
Sbjct: 470 AGYKVPKHIEIMAE 483
|
Length = 509 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLP 325
P+L + +A + YTSGST LPKGV ++HGN+VA I+ + NP DV +++LP
Sbjct: 161 PALQPDD-IAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNP--DDVIVSWLP 217
Query: 326 LAH 328
L H
Sbjct: 218 LYH 220
|
Length = 4334 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 6e-08
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 26/176 (14%)
Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEW-----DDPSVGRVG 500
+R ++C G L AD+Q + A + YG TE T D +GR
Sbjct: 772 LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR-- 829
Query: 501 PPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
P+ CYI D +P+P GE+ + G + GY PG T+E +
Sbjct: 830 -PIANLACYI----LDANL-----EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPS 879
Query: 556 E--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
G + TGD+ + DG +E R VKL+ G I LG++EA L+ +V
Sbjct: 880 PFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLR-GLRIELGEIEARLLEHPWV 934
|
Length = 5163 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 477 YGLTETCAG----STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV- 531
YG+TET G + PS+GR G CY + D +P+P GEI
Sbjct: 319 YGMTETIVGIIGDRPGDKRRWPSIGRPG----FCYEAEIRDDHN------RPLPAGEIGE 368
Query: 532 -----VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V G + Y+ +P T++V + D W +TGD G V +G +DR+ +++
Sbjct: 369 ICIKGVPGKTIFKEYYLDPKATAKVLEADG----WLHTGDTGYVDEEGFFYFVDRRCNMI 424
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI--HADPFHNYCV-ALVVP 629
K + GE +S ++E + + + +I++ D + + A VV
Sbjct: 425 K-RGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
|
Length = 517 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 8e-08
Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 448 RFMICGGAPLS---ADS--QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
F+ CG L A +RF + A I YG TE T E D + +
Sbjct: 264 HFLFCGEE-LPHKTAKKLLERFPS----ATIYNTYGPTEATVAVTSIEITDEMLDQY-KR 317
Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
+P Y K L+ DE G K D GEIV+ G +V+ GY NNP KT+E + G
Sbjct: 318 LPIGYAKPDSPLLIIDEEGTKLPD-GEQ-GEIVISGPSVSKGYLNNPEKTAEAFF-TFDG 374
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN-IMIHAD 617
++TGD G + DG L R +KL +G I L ++E L S YV++ +++ +
Sbjct: 375 QPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYN 432
Query: 618 PFH--NYCVALVVPSHKALEK 636
H Y +A VVP + E+
Sbjct: 433 KDHKVQYLIAYVVPKEEDFER 453
|
Length = 503 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCY 507
C G L AD R GAP+ YG TE A S + ++ + R G VP
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTE--AAVDVSWYPAFGEELAAVR-GSSVP--- 777
Query: 508 IKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER 557
I W+ G + P+P G++ + G + GY P T+ + D ER
Sbjct: 778 IGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGER 837
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
M + TGD+ + DG +E + R D +K++ G+ I LG+++ A+ + V+ + HA
Sbjct: 838 -M--YRTGDVARWLDDGAVEYLGRSDDQLKIR-GQRIELGEIDRAMQALPDVEQAVTHA 892
|
Length = 1296 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ +A A L+ G D I E +E + + V + +
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D L + L+++ V L+ S L +L V + L+++ E + G
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLP-VPAGLRSL--------CLDEPADLLCG------ 643
Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
S +P + + +A ++YTSGSTG PKGV I+HG + I
Sbjct: 644 ------------YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVI 688
|
Length = 3956 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529
G + + +G TET W +P G +G P P I ++ D G S + GE
Sbjct: 326 GIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDII--DPDG--KSCEVGEEGE 381
Query: 530 IV--------VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR 581
IV +G F GY+ +P +T+EV+ +++TGD + DG L + R
Sbjct: 382 IVIRTSDGKPLGLFM---GYYRDPERTAEVWHDG-----YYHTGDTAWMDEDGYLWFVGR 433
Query: 582 KKDIVKLQHGEYISLGKVEAALISSDYV 609
D++K G I +VE+ALI V
Sbjct: 434 ADDLIK-SSGYRIGPFEVESALIQHPAV 460
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 27/194 (13%)
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPIGQAYGLTETCAGSTFSEW 491
I S+R VL GAP+ D +RF+ M A I YG TE ++
Sbjct: 196 IQLPSLRRVLSA--------GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGR 247
Query: 492 D-------DPSVGR---VGPPVPCCYIKLVSWDEGG--YKTSDKPMPR---GEIVVGGFN 536
+ P G VG PVP ++++ D+G D +P GEI+V G +
Sbjct: 248 EVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPH 307
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
VT Y+N P T + K+ + W GD+G G L RK V+ G ++
Sbjct: 308 VTREYYNRPEATK-LAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTV 366
Query: 597 GKVEAALISSDYVD 610
VE V
Sbjct: 367 P-VEQVFNRHPGVR 379
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 86/372 (23%), Positives = 134/372 (36%), Gaps = 80/372 (21%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE---S 336
++YT G+TG+PKGVM +I G ++AA +
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLG--------GPDFATGEPTLEELAKQVAAGGAGT 59
Query: 337 IMLCAGCAI-GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395
L A + G G L ++ + G VL P FD R V + VE
Sbjct: 60 RFLPACPLMHGAGQWLALSALFA-------GGTVVLLPDDK------FDPDR--VWRTVE 104
Query: 396 EKGGLTKNLFNIG--YKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC 452
+ T L +G + R L A+E + G + L + R +
Sbjct: 105 KHRVNT--LVIVGDAFARPLLEALEAA--GRYDLSSL------------------RAISS 142
Query: 453 GGAPLSADS-QRFINICMGAPIGQAYGLTETCA-GSTFSEWDDPSVGRVGPPVPCCYIKL 510
GA S + Q + + + A G +ET GS+ S S G +
Sbjct: 143 SGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGAS--ATGKFELGPDTVV 200
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
+ ++G G I GG V GY+ +P KT++ ++ G+ + GD +V
Sbjct: 201 LD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFRE-IDGVRYAVPGDFARV 256
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVV-- 628
DG + ++ R + GE + +VE AL + V AD ALVV
Sbjct: 257 EADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDV------AD-------ALVVGV 302
Query: 629 PSHKALEKWAHE 640
P E+W
Sbjct: 303 PD----ERWGQR 310
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 29/183 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ C FA+ L + G R AI E IA C R ++
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149
Query: 192 DALIHSLNETQVTTLICDSKQ--------LKKL--SAVSSSLKTIKNVIYFENDGSEKDS 241
+AL +N+ +I + LK + A+ ++++V+ G+
Sbjct: 150 EALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208
Query: 242 GVSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
G W S++ E E + DP I+YTSGSTG PKGV+
Sbjct: 209 -WVEGRDVWWHDLMAKASAYCEPEPMD---SEDPLF--------ILYTSGSTGKPKGVLH 256
Query: 296 THG 298
T G
Sbjct: 257 TTG 259
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 58/272 (21%), Positives = 115/272 (42%), Gaps = 54/272 (19%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV 503
++ + GGA SA + R + G + Q +G+ E ++ DDP+ G P+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLV--NYTRLDDPAEIIFTTQGRPM 357
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
++ D+ G P+ GE ++ G GY+ P + + D G
Sbjct: 358 -SPDDEVRVVDDHG-----NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAF--DAEG-- 407
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620
++YTGD+ ++ P+G + ++ R KD + + GE I+ ++E L++ V A
Sbjct: 408 FYYTGDLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAV----HDA---- 458
Query: 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIP 680
ALV + L E S + + + A+ Q L + + L ++++P
Sbjct: 459 ----ALVSMPDELL----GEKSCAF-----IVVRDPALKAAQ--LRRFLRERGLAEYKLP 503
Query: 681 AKIKL---MPEPWTPEAGLVTAALKIKREQLK 709
+++ +P +TA K+ ++ L+
Sbjct: 504 DRVEFVDSLP---------LTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 18/55 (32%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
P+DP+ P + + +A ++YTSGSTG PKGV I H N A
Sbjct: 78 PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 28/182 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E++ C FA+ L + G R AI E IA C R +++
Sbjct: 80 TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSA 139
Query: 192 DALIHSLNETQVTTLI-CDS-----KQLKKLSAVSSSLK---TIKNVIYFENDGSEKDSG 242
+AL +N+ + LI D K + V +L+ +++ VI + G E
Sbjct: 140 EALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVP-- 197
Query: 243 VSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
+ G W S + E E + DP I+YTSGSTG PKGV+ T
Sbjct: 198 MVEGRDVWWHDLMAKASPYCEPEPMD---AEDPLF--------ILYTSGSTGKPKGVVHT 246
Query: 297 HG 298
G
Sbjct: 247 TG 248
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 127 DYEWQTYGEVFDRACSF----------ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCF 176
DY + E DR ++ A+ L+ G+ D A+ + I F G
Sbjct: 33 DYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGAL 92
Query: 177 RQSITVVTIYSSLGEDALIHSLNETQVTTLIC-DSKQLKKLSAVSSSLKTIKNVIYFEND 235
+ VV + GE AL H L+++ LI D L ++ + +I E+D
Sbjct: 93 KAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDD 152
Query: 236 GSEKDSGVSGGI-SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
K I ++ + ++++ K G +P + + + VA++ YT G+TGLPKG M
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAM 211
Query: 295 ITHGNIVATAAAIKTLIPNPGRSDV-----YLAYLPLAHVLEL 332
+THGN+ +A +I + P R+ + LPL H+ L
Sbjct: 212 LTHGNL-TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 38/176 (21%), Positives = 54/176 (30%), Gaps = 31/176 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TYGE+ RA + A+ L G A++ E +A G V I
Sbjct: 14 TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L ++ D + A
Sbjct: 74 ERRAAILARAGARAVLTDPGLAQPEEAPDL-----------------------------L 104
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + P P +A +++TSGSTG PKGVMITH V T +
Sbjct: 105 VVADDAAAAESPAPPPPRVDPDD--LAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 68/198 (34%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G E T+G++ D + A+ L G R + E IA ++ V +
Sbjct: 2 GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
G DA+ H L ++ L+ DGS+
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVT--------------------------DGSD------- 88
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
DP A+++YTSG+TG PKG + H ++
Sbjct: 89 ----------------------DP--------AILIYTSGTTGPPKGALHGHRVLLGHLP 118
Query: 306 AIKT---LIPNPGRSDVY 320
++ L P PG DV+
Sbjct: 119 GVELYFELAPRPG--DVF 134
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325
P+D VA+++ TSG+TG PKG M+T + A+A A + PG+ +L LP
Sbjct: 32 PIDD------DVALVVATSGTTGTPKGAMLTAAALTASADATHDRLGGPGQ---WLLALP 82
Query: 326 LAHV 329
H+
Sbjct: 83 AHHI 86
|
Length = 358 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 62/269 (23%)
Query: 94 SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153
++ D F+ DG ++ TYG++ + A+ LV G
Sbjct: 3 NNLFDALRAAFADRDAPFIETPDGLRY-----------TYGDLDAASARLANLLVALGVK 51
Query: 154 VDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS------LG--EDALIHSLNETQ 202
R A+ E E + R + T Y+ +G E AL+
Sbjct: 52 PGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALV------- 104
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
+CD LS ++++ +V + DG+ + F V
Sbjct: 105 ----VCDPANFAWLSKIAAAAGAP-HVETLDADGTGSLLEAAAAAP----DDFETVP--- 152
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-----TLIPNPGRS 317
R D +A I+YTSG+TG KG M++HGN+++ A + T P
Sbjct: 153 -RGADD--------LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFT----PD-- 197
Query: 318 DVYLAYLPLAHVLEL-AAESIMLCAGCAI 345
DV + LP+ H L A ++ L AG ++
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASM 226
|
Length = 504 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA----TAAAIKT 309
F++ G R P + VA + YT G+TG+ KG + H NIVA A ++
Sbjct: 183 RFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP 242
Query: 310 LIPNPGRSD--VYLAYLPLAHVLELAAESIM 338
R D ++ LPL H+ L ++
Sbjct: 243 AFEKKPRPDQLNFVCALPLYHIFALTVCGLL 273
|
Length = 557 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 77/276 (27%), Positives = 110/276 (39%), Gaps = 55/276 (19%)
Query: 447 IRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETC-------AGSTFSEWDDPSV-- 496
+R I GG L+ + QR AYG TET A E SV
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEE-GAASVPI 2508
Query: 497 GR-VGPPVPCCYI---KLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
GR VG V YI L +G GE+ VGG + GY + PG T+E +
Sbjct: 2509 GRVVGARV--AYILDADLALVPQGA---------TGELYVGGAGLAQGYHDRPGLTAERF 2557
Query: 553 KVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D G + TGD+ ++ DG +E + R VK++ G I LG++E+ L+ V
Sbjct: 2558 VADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIR-GFRIELGEIESRLLEHPAV 2616
Query: 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVA 669
++ +AL PS K L + + A +E Q AL +
Sbjct: 2617 REAVV---------LALDTPSGKQLAGYL------------VSAVAGQDDEAQAALREAL 2655
Query: 670 KA---AKLDKFEIPAKIKLMPE-PWTPEAGLVTAAL 701
KA +L + +PA + L+ P T L AL
Sbjct: 2656 KAHLKQQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET--CAGSTFSEWDDPSVGRVGPP 502
++R G PL+ + R+ +G I YG TET G+ + + G +G P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMC 560
+P ++ D+ G +D + I V +GY+++P KT+E+
Sbjct: 265 LPG--YRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGR----- 317
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W+ TGD+ + DG I R D++ G I VE+AL+ V
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISA-GYRIGPFDVESALLEHPAV 365
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
P + V ++YTSG+TG PKGVM T NIV A + G DV L P+A
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-----GADDVILMASPMA 248
Query: 328 H 328
H
Sbjct: 249 H 249
|
Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 28/170 (16%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A L+ G D + E VE +A + V +
Sbjct: 3122 SYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPR 3181
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + + ++ V L+ + L++L A + D G S
Sbjct: 3182 ERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTL------------DRLDLNGYSE-- 3227
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+P + +N +A ++YTSGSTG PKGV + HG +
Sbjct: 3228 ------------NNP-STRVMGEN-LAYVIYTSGSTGKPKGVGVRHGALA 3263
|
Length = 3956 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 66/256 (25%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSEWDDPSVGRVGP-- 501
+R++ G + ++++ G I + YG+TET A +T +VGR+ P
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 502 -----PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF--NNPGKTSEVYKV 554
PVP DEGG + V G NV GY NPG V +
Sbjct: 969 EYRLEPVP-------GIDEGG-----------RLFVRGPNVMLGYLRAENPG----VLEP 1006
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE--AALISSDYVDNI 612
G W+ TGDI + +G + I R K K+ GE ISL VE AA + D
Sbjct: 1007 PADG--WYDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEELAAELWPDA---- 1059
Query: 613 MIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA 672
+HA A+ +P + E+ L A + A AKAA
Sbjct: 1060 -LHA--------AVSIPDARKGERII------------LLTTASDAT--RAAFLAHAKAA 1096
Query: 673 KLDKFEIPAKIKLMPE 688
+ +PA+I + E
Sbjct: 1097 GASELMVPAEIITIDE 1112
|
Length = 1140 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
R+R G L A+ + G I G TE + D G G PVP
Sbjct: 279 RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPG 338
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
++LV D G + +P GE+++ G + Y+NN KT + ++ + W +G
Sbjct: 339 YRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQGE-----WTRSG 389
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D DG R D++K+ G Y+S ++E+ALI V
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESALIQHPAV 432
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
P+ S P A I++TSGSTG PKGVM+ IV
Sbjct: 591 PLQLSQPHH--TAYIIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)
Query: 129 EWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
E T+ + RA + A L + G D R + C E +
Sbjct: 37 EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNK 96
Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
L D ++H +N + ++ D + ++L + ++ V++ S+ DS +
Sbjct: 97 QLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFI--GPSDADSAAAHMP 154
Query: 248 SNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
V S+ + L RS V P L A I Y++G+TG PKGV+ +H ++ +
Sbjct: 155 EGIKVYSYEAL--LDGRSTVYDWPELDETTAAA-ICYSTGTTGAPKGVVYSHRSLYLQSL 211
Query: 306 AIKT---LIPNPGRSDVYLAYLPLAHVL 330
+++T L G S +L +P+ HVL
Sbjct: 212 SLRTTDSLAVTHGES--FLCCVPIYHVL 237
|
Length = 576 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 43/178 (24%), Positives = 56/178 (31%), Gaps = 56/178 (31%)
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E+ ASGL G R I E +A + V I+S G
Sbjct: 8 WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
DA+ L ++K L DG +
Sbjct: 68 PDAVATRLQ-------DAEAKVL------------------ITADGFLRR---------- 92
Query: 251 TVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
GKR + DP A+I+YTSG+TG PKG + TH AA
Sbjct: 93 -----------GKRVDLKDDP--------AMIIYTSGTTGKPKGTVHTHAGFPVKAAK 131
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
VAVI++TSG+ LPKGV +TH N++A A +P DV +++LP H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFH 235
|
Length = 539 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 453 GGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGA + A ++R + G + YGLTET A + + D P + +G P +++
Sbjct: 313 GGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVI 371
Query: 512 SWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
+ + +P GEIVV G V GY+N P T+E + ++ G +F TGD+G
Sbjct: 372 DPETL------EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF-IEIDGKRFFRTGDLG 424
Query: 569 QVYPDGCLEIIDRKK 583
++ +G I DR K
Sbjct: 425 RMDEEGYFFITDRLK 439
|
Length = 546 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 43/198 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+ ++ A + A + R A+LA + +A G + VV + G
Sbjct: 27 SRSDLAGAATAVAERVAGAR-----RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV 81
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
H L DS L + +V
Sbjct: 82 AERRHILA---------DSGAQAWLGPAPDDPAGLPHV---------------------- 110
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
V L RS P + A+I+YTSG+TG PKGV+++ I A A+
Sbjct: 111 -----PVR-LHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW 164
Query: 312 PNPGRSDVYLAYLPLAHV 329
DV + LPL HV
Sbjct: 165 QWTAD-DVLVHGLPLFHV 181
|
Length = 471 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 261 LGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
L S +P++ + +A ++YTSGSTG PKG HG +V
Sbjct: 1703 LEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745
|
Length = 3956 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
+P + A I++TSGSTG PKGV+ TH A A+++L D LA P
Sbjct: 80 GIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-IREGDRDLAAFPP 135
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ +++ R + A L G D RA ILA +E+ +AF G + + V + G
Sbjct: 37 TWSQLYRRTLNVAEELRRHGSTGD-RAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG- 94
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
++ +V+ ++ D+ S V ++ + +V + G +
Sbjct: 95 -----GAHDERVSAVLRDTSP----SVVLTTSAVVDDVTEY----VAPQPG-------QS 134
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIVA 302
EV+ L SP ++ A + YTSGST P GVM++H N++A
Sbjct: 135 APPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA 187
|
Length = 578 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
R+R + G PL+ + + G I YG TET A S G +G P+P
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPG 259
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDERG 558
+ L+ DEG + P+ GEI + G GY +P KT+ +
Sbjct: 260 YRVVLLD-DEGK----EIPVTEGEIALDLGDRPIGLM---LGYMGDPEKTAAAF-RGG-- 308
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY-ISLGKVEAALISSDYV 609
++ TGD DG L + R D+ K +Y IS +VE+AL+ V
Sbjct: 309 --YYRTGDKAYRDEDGYLWFVGRADDVFK--SSDYRISPFEVESALLEHPAV 356
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFR-QSITV-VTIYSSL 189
T+ E+ DR + A L G R IL E+ + +I V V +
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 190 GEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
E A + +++ ++ ++ +AV + + V+ V+GG S+
Sbjct: 104 PEIAFL--VSDCGAHVVVTEAALAPVATAVRDIVPLLSTVV------------VAGGSSD 149
Query: 250 WTVSSFSEV--EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
+V + ++ E +PVD +P + A+IMYTSG+TG PKG ++TH N+ A
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVD--IP-NDSPALIMYTSGTTGRPKGAVLTHANLTGQAM-- 204
Query: 308 KTLIPNPG---RSDVYLAYLPLAHVLELAAESIMLCAG 342
T + G SDV +PL H+ + + L G
Sbjct: 205 -TCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLG 241
|
Length = 542 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTS----------EVYKVDERGMC--WFYTGDIGQVYPDGC 575
GEI V G VTA Y+++P + +V ++R W TGD+G V DG
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445
Query: 576 LEIIDRKKDIVKLQHGEYI 594
L I DR +D+++ GE+I
Sbjct: 446 LTIHDRARDVIR-SGGEWI 463
|
Length = 576 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV-YLAYLPLAHVLELAAE 335
A +YTSG+TGLPK +++H A A+ + DV YL LPL H +
Sbjct: 83 PAFYIYTSGTTGLPKAAIMSHRR-WLRAGAVFGGLGLLKPDDVLYLC-LPLYH-----SN 135
Query: 336 SIMLCAGCAIGYGSTL 351
++ + A+ G++L
Sbjct: 136 ALTVGWSSALAAGASL 151
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 62/225 (27%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ E+ + + A+ G+ A+ E +E+ + G + + I S+L
Sbjct: 5 TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
++L+H + ++ LI
Sbjct: 65 ESLLHCITVSKAKALI-------------------------------------------- 80
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVA-----VIMYTSGSTGLPKGVMITHGNIVATAAA 306
F+ ++ L +S +P PSQ+ V +YTSG+TGLPK +I H AA
Sbjct: 81 ---FNLLDPLLTQSSTEP--PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAG 135
Query: 307 I-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
P DV LPL H +A IM G A+ +GST
Sbjct: 136 AYYAFGMRP--EDVVYDCLPLYH----SAGGIM-GVGQALLHGST 173
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
Y E+ RA A L+ G D + E +E +A + V +
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L ++ V L+ S +KL +++ ++ V+ + +
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRKLP-LAAGVQ----VLDLDRPAAW------------- 639
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
+ +SE +P P +A ++YTSGSTG PKG H +
Sbjct: 640 LEGYSE------ENPGTELNPEN--LAYVIYTSGSTGKPKGAGNRHRALSN 682
|
Length = 5163 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--GEDALIHSLNETQVTTLICDSKQLK 214
+ A+ + C E+ + G + +V I + L E A I L +Q + L+ ++
Sbjct: 64 KVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWI--LQNSQASLLVTSAQFYP 121
Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
+ T I D GVS ++T + L P+ S
Sbjct: 122 MYRQIQQEDATPLRHICLTRVALPADDGVS----SFTQLKAQQPATLCYAPPL-----ST 172
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR-SDVYLAYLPLAHV 329
+ A I++TSG+T PKGV+ITH N+ A + R DVYL +P H+
Sbjct: 173 DDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGS 286
++ E+ +E G+ G+ V S + ++L + + + + + ++++TSG+
Sbjct: 104 LVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGT 163
Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGC 343
+G PK V TH + + + G DV +PL H V +A ++ L AG
Sbjct: 164 SGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAV--MAGWAVALAAGA 220
Query: 344 AI 345
+I
Sbjct: 221 SI 222
|
Length = 529 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 67/271 (24%), Positives = 101/271 (37%), Gaps = 50/271 (18%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRV 499
+R + GG L A+ R + + YG TET T W +D +
Sbjct: 1388 TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTH--WQCQAEDGERSPI 1445
Query: 500 GPPVP--CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKV 554
G P+ C + +P G E+ +GG + GY P T+E +
Sbjct: 1446 GRPLGNVLCRV---------LDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVP 1496
Query: 555 D---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN 611
D E G + TGD + DG LE + R VKL+ G + +++A L++ V
Sbjct: 1497 DPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLR-GFRVEPEEIQARLLAQPGVAQ 1555
Query: 612 IMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671
A V+ A A + Y EA E + K A A
Sbjct: 1556 -------------AAVLVREGA----AGAQLVGYY-------TGEAGQEAEAERLKAALA 1591
Query: 672 AKLDKFEIPAK-IKLMPEPWTPEAGLVTAAL 701
A+L ++ +PA+ I+L P P L AL
Sbjct: 1592 AELPEYMVPAQLIRLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 268 DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
D L + + VA+I +TSG+TGLPKG M H +I+A A + P DV++ PLA
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLA 199
Query: 328 HVLELAA 334
L
Sbjct: 200 FTFGLGG 206
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 19/212 (8%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ A+ L + G A L E A G I I L
Sbjct: 60 TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGI-ANPINPLLEP 118
Query: 192 DALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246
+ + L L+ K++ V ++L ++ V+ E D + G
Sbjct: 119 EQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV--EVDLARYLPGPKRL 176
Query: 247 ISNWT-------VSSF-SEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
+ F +E+ + + VA +T G+TG+PK THG
Sbjct: 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHG 236
Query: 299 NIVATAAAIKTLI-PNPGRSDVYLAYLPLAHV 329
N VA A L+ PG D LPL HV
Sbjct: 237 NEVANAWLGALLLGLGPG--DTVFCGLPLFHV 266
|
Length = 632 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 447 IRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS---EW-DDPSVGRVGP 501
+R I AP + + I+ G I + Y +E G T +W P G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMID-WWGPIIHEYYASSEGG-GVTVITSEDWLAHP--GSVGK 319
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG---YFNNPGKTSEVYKVDERG 558
V ++++ DE G +P GEI F + Y N+P KT+
Sbjct: 320 AV-LGEVRIL--DEDG-----NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR----NP 367
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W GD+G + DG L + DRK D++
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMI 395
|
Length = 502 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
G + V G V A Y+ G+ +D+ G +F TGD+ + G + I DR KD++K
Sbjct: 385 GRLKVRGPAVAAAYYRVDGEI-----LDDDG--FFDTGDVATIDAYGYMRITDRSKDVIK 437
Query: 588 LQHGEYIS 595
GE+IS
Sbjct: 438 -SGGEWIS 444
|
Length = 542 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 13/147 (8%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRVGP 501
+R + GG+ A RFI G Q YGL+ET + DD S+ G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 502 PVPCCYIKLVSWDEGGYKTSD--KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
P P + L + D G G + + GY+NNP +T+EV +D
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDG--- 402
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W TGD+ + DG I R +++
Sbjct: 403 -WVNTGDLLERREDGFFYIKGRSSEMI 428
|
Length = 540 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ DR C A+ L + G I +E IA C R +++
Sbjct: 122 TYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSA 181
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISN 249
++L + + C K + +AV KTI K+++ D S K+ GVS GI
Sbjct: 182 ESLAQRI-------VDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN-GVSVGIC- 232
Query: 250 WTVSSFSEVEKLGKR---------SPVDPSLPSQNGVA--------VIMYTSGSTGLPKG 292
T + +++ + V P+ P++ V ++YTSGSTG PKG
Sbjct: 233 LTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 292
Query: 293 VM-ITHGNIVATAAAIK 308
V+ T G +V TA K
Sbjct: 293 VLHTTGGYMVYTATTFK 309
|
Length = 666 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 266 PVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
P D + I++TSG+TG PKGV I+H N+V
Sbjct: 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPV 503
+R + G PL+ + + +G PI + TET A + P G +G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVV--GGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
P ++ D G P GE+ + G ++ GY N + + + W
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDG-----W 321
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
+ TGD+ DG + R D++K G + +VE+AL+
Sbjct: 322 YLTGDLAYRDEDGYFWFVGRADDVIK-TAGHLVGPFEVESALM 363
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 87/378 (23%), Positives = 133/378 (35%), Gaps = 98/378 (25%)
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI---VATAAAIKTLIPNPGRSD 318
G +P P+ + VA + G+TG PK + TH + V +A I
Sbjct: 178 GLFTPAPPADAGE--VAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ----QT 231
Query: 319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTL 375
VYL LP AA + L + A+G G T+ + S P L
Sbjct: 232 VYLCALP-------AAHNFPLSSPGALGVFLAGGTVVLAPDPS--------------PEL 270
Query: 376 MAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW-DAI 434
P I +R V V LW A
Sbjct: 271 --CFPLI-ERHGVTVTALVP------------------PLA------------SLWLQAA 297
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
+ RA L +R + GGA LSA R + +G + Q +G+ E ++ DDP
Sbjct: 298 --EWERADLSS-LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV--NYTRLDDP 352
Query: 495 S---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKT 548
+ G P+ ++ D G P+ GE+ + G GY+ P
Sbjct: 353 PEIIIHTQGRPL-SPDDEVRVVDADG-----NPVAPGEVGELLTRGPYTIRGYYRAPEHN 406
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ + D G ++ +GD+ + PDG L + R KD + + GE I+ +VE L+
Sbjct: 407 ARAF--DADG--FYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLR--- 458
Query: 609 VDNIMIHADPFHNYCVAL 626
H VA+
Sbjct: 459 ------HPAVHDAALVAM 470
|
Length = 542 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 62/236 (26%), Positives = 82/236 (34%), Gaps = 62/236 (26%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E++D A L G R I E IA C R +G
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR-----------IGA 123
Query: 192 DALIHSL-----NETQVTTLICDSK-----------------QLKKL--SAVS-SSLKTI 226
IHS+ ++ + I D+K K L A+ S K
Sbjct: 124 ---IHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180
Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
K +I N G G +W E + K PVD I+YTSG+
Sbjct: 181 KVLIL--NRGQVPAPLKPGRDLDWA-------ELMAKARPVDCVPVESTDPLYILYTSGT 231
Query: 287 TGLPKGVM-ITHGNIVATAAAIKTLIP-NPGR-----SDV-------YLAYLPLAH 328
TG PKGV+ T G VA +++ + PG SDV Y+ Y PL H
Sbjct: 232 TGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLEL 332
A+I++TSGS G PKGV+ +H +++A IKT+ D +++ LPL H L
Sbjct: 368 ALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN-DRFMSALPLFHSFGL 421
|
Length = 718 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE 600
WF TGD+ + DG ++I DR KD++K GE+IS +E
Sbjct: 410 WFPTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIE 448
|
Length = 539 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +++++ C F+ L+N + + I +E IA C R T ++
Sbjct: 94 TYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153
Query: 192 DALIHSLNETQVTTLICDSKQ---LKKLSAVSSSLK------TIK--NVI-YFEND-GSE 238
+LI + ET LI + ++ + +LK T K NVI F ND SE
Sbjct: 154 KSLIDRI-ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212
Query: 239 KDSGVSGGISNW--TVSSFSEVEKLGKRS--------PVDPSLPSQNGVAVIMYTSGSTG 288
D I T+S + E++K+ + + PV+ S P I+YTSG+TG
Sbjct: 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHP-----LYILYTSGTTG 267
Query: 289 LPKGVMITHG-NIV 301
K V+ ++G ++V
Sbjct: 268 NSKAVVRSNGPHLV 281
|
Length = 647 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI------VATAAAIKTL 310
E E G P P Q A + YTSG+TGLPKG +I ++T A ++
Sbjct: 136 EPESAGPPIEDPPREPEQ--PAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRH- 192
Query: 311 IPNPGRSDVYLAYLPLAHVL 330
GR +V L +PL HV+
Sbjct: 193 ----GRHNVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
+ + + P S +I++TSG++G PKGVM++ N+ TA L
Sbjct: 122 DALEPADTPSIPPERVS-----LILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAH 176
Query: 317 SDVYLAYLPLAHVLELA 333
S +L P+ H++ L
Sbjct: 177 S-SFLCDAPMFHIIGLI 192
|
Length = 488 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
A + TSGSTGLPK + T +A+A + +L+P D +L LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 46/210 (21%)
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--- 189
Y + RA + A L+ G R A++AET ++ AF C Y+ L
Sbjct: 52 YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPV 102
Query: 190 ---------GEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGSE 238
G ++ I QL+ + SA +++ T ++ + N+ +
Sbjct: 103 PLPLPMGFGGRESYI---------------AQLRGMLASAQPAAIITPDELLPWVNEATH 147
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
+ + + + F + + + V P+ + +A + Y+SGST P+GV+ITH
Sbjct: 148 GNPLLHVL----SHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
++A AI D +++LP H
Sbjct: 200 ALMANLRAISHDGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVY------KVDERGMCWFYTGDIGQVYPDGCLEIIDR 581
GE+ V G V GY +P +T+ + ER + TGD+ + DG LE + R
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGER---LYRTGDLARRRSDGVLEYVGR 4123
Query: 582 KKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPFHNYCVALVVPSHKALE 635
VK++ G I LG++EA L V + + + V +VP L
Sbjct: 4124 IDHQVKIR-GYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLA 4178
|
Length = 4334 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
SLP A ++YTSGSTG PKGV+++HG I A+
Sbjct: 2330 SLPQHQ--AYLIYTSGSTGKPKGVVVSHGEIAMHCQAV 2365
|
Length = 4334 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV------GRVGPPVPCC 506
GGA LS R I +G + Q +G+ E T DD GR P P
Sbjct: 308 GGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT--RLDDSDERIFTTQGR--PMSPDD 363
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT------AGYFNNPGKTSEVYKVDERGMC 560
+ + D G P+P+GE+ G +T GY+ +P + + D G
Sbjct: 364 EVWVA--DADG-----NPLPQGEV---GRLMTRGPYTFRGYYKSPQHNASAF--DANG-- 409
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
++ +GD+ + PDG + ++ R+KD + + GE I+ ++E L+ V IHA
Sbjct: 410 FYCSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIENLLLRHPAV----IHA 460
|
Length = 536 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ D A FA+ L G + R +L E AF C + V + L
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71
Query: 192 DALIHSLNETQVTTLICD 209
L H L+++ L+ +
Sbjct: 72 QDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R A+GL+ G R A++ + C E+ A+ + V I ++L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 192 DALIHSLNETQVTTLICD 209
+ L H L+ + ++ D
Sbjct: 65 EELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 280 IMYTSGSTGLPKGVMITHGNIV 301
I+YTSGSTG PKGV I+H N+V
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 475 QAYGLTETCAGSTFSEWDDPSVGR-VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---I 530
Q YG TE T + + P VG P+ + +VS + + P+ GE +
Sbjct: 330 QGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVS------EETKVPVSSGETGLV 383
Query: 531 VVGGFNVTAGYF-NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
+ G ++ +GY + G+ V+ G W+ TGD+G V G L + R VK+
Sbjct: 384 LTRGTSLFSGYLGEDFGQGF----VELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG 439
Query: 590 HGEYISLGKVEAALI 604
E +SL +E+ L+
Sbjct: 440 -AEMVSLEALESILM 453
|
Length = 539 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A ++YTSG+TGLPKG I+ + T+ + + Y +PL H +
Sbjct: 89 PAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC-MPLYH-----GTA 142
Query: 337 IMLCAGCAIGYGSTL 351
L +G G TL
Sbjct: 143 AFLGLCYCLGSGGTL 157
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 132 TYGEVFDRACSFASGLVNFG--HNVDTRAAILAET----CVEWF-IAFQGCFRQSITVVT 184
TY EV R+ A L+ DT A +L + W +A GC
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWI-WLGLAKLGC-----PTAF 58
Query: 185 IYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
+ +++ +L+H L+ D + L+ + + +L+ + +++ + S
Sbjct: 59 LNTNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTS-----PP 113
Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
G+ + + ++ S A+ +YTSG+TGLPK I+H ++
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRS--TALYIYTSGTTGLPKAARISHLRVLQ-C 170
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
+ + +L VY LPL H + +++ GC IG G+TL +
Sbjct: 171 SGMLSLCGVTADDVVYTT-LPLYHS----SGALLGIVGC-IGLGATLVL 213
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 275 NGVAVIMYTSGSTGLPKGVMIT 296
+ +A ++YTSGSTGLPKGVM+
Sbjct: 3869 DNLAYVIYTSGSTGLPKGVMVE 3890
|
Length = 4334 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 63/192 (32%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ + + FA+ L + G R L E ++A G + ++S+ G
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + L + LI + +L +
Sbjct: 62 EPIRDRLELGEAKVLIT-TPELYE------------------------------------ 84
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA---TAAAIK 308
+ P DP+L + +TSG+TG PKGV+ H +VA TA +
Sbjct: 85 -----------RTDPEDPAL--------LHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125
Query: 309 TLIPNPGRSDVY 320
L P+ DVY
Sbjct: 126 DLRPD----DVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYK--------------VDERGMCWFYTGDIGQVYPD 573
GEI + G N+ GY+ P +T+ ++ + + W TGD G VY D
Sbjct: 419 GEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL-WVRTGDYG-VYFD 476
Query: 574 GCLEIIDRKKDIV 586
G L I R KD+V
Sbjct: 477 GELYITGRVKDLV 489
|
Length = 631 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R+ A + G AI E + + R + + S L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ ++++ LI + +L A+ +++ + + DG
Sbjct: 86 AEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDG--------------E 131
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM--ITHGNIVATAAAIKT 309
+ F + P P + ++ ++Y+SG+TG PKG+ +
Sbjct: 132 LEGFVGYAEAVAGLPATP-IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF 190
Query: 310 LIPNPG-RSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
L G RSD VYL+ PL H A +++ G G+ + M
Sbjct: 191 LQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG-----GTVIVM 231
|
Length = 511 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ +W +Y E+ RA + A+GL G A + E++I F + + V
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDGSEKD 240
S + L ++ + I D + S L T++N+I E
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNII-VAGQTGEA- 161
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
F +E + P+ + VA + GSTG PK + TH +
Sbjct: 162 ------------ELFLWLESPAEPVKFPPTKSDE--VAFFQLSGGSTGTPKLIPRTHNDY 207
Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA---AESIMLCAGCAI 345
V + I L YL LP AH L+ A + GC +
Sbjct: 208 YYSVRRSVEICWLTQ----QTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 254
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 30/151 (19%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF---SEW-DDP-SVGRV-- 499
+ I AP + + G I + Y TE G T EW P +VGR
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEG-LGFTACDSEEWLAHPGTVGRAMF 335
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG----YFNNPGKTSEVYKVD 555
G D+ G +P GE G G Y N+P KT+E
Sbjct: 336 GDLHIL--------DDDG-----AELPPGEP--GTIWFEGGRPFEYLNDPAKTAEAR--H 378
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
G W GDIG V DG L + DR ++
Sbjct: 379 PDGT-WSTVGDIGYVDEDGYLYLTDRAAFMI 408
|
Length = 511 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 101/442 (22%), Positives = 165/442 (37%), Gaps = 112/442 (25%)
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
VV I + DAL +L ++T++ D++ ++++ ++ I D
Sbjct: 112 VVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVI-------------DP 158
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+G E+ G R V +++ TSG+TG PKGV +
Sbjct: 159 ATAGA------------EESGGRPAVAAP------GRIVLLTSGTTGKPKGV--PRAPQL 198
Query: 302 ATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
+A + I + R S + +A +P+ H L L ML A+G G+ LT
Sbjct: 199 RSAVGVWVTILDRTRLRTGSRISVA-MPMFHGLGLG----MLMLTIALG-GTVLTHRHFD 252
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
++ S+ + AVP + R+ E + +V + L +
Sbjct: 253 AE---AALAQASLHRADAFTAVPVVLARILE-LPPRVRARNPLPQ--------------- 293
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQA 476
+R ++ G L QRF++ G +
Sbjct: 294 -----------------------------LRVVMSSGDRLDPTLGQRFMD-TYGDILYNG 323
Query: 477 YGLTETCAGS--TFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
YG TE G+ T ++ D P VG PV C ++++ D P G I VG
Sbjct: 324 YGSTEVGIGALATPADLRDAPET--VGKPVAGCPVRIL--DRNNRPVG--PRVTGRIFVG 377
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593
G Y + GK VD GM TGD+G + G L I+ R+ D++ + GE
Sbjct: 378 GELAGTRYTDGGGKAV----VD--GMT--STGDMGYLDNAGRLFIVGREDDMI-ISGGEN 428
Query: 594 ISLGKVEAALIS-SDYVDNIMI 614
+ VE AL + DN +I
Sbjct: 429 VYPRAVENALAAHPAVADNAVI 450
|
Length = 516 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 18/168 (10%)
Query: 470 GAPIGQAYGLTETCAGSTFSEW---DDPSVGRVG---PPVPCCYIKLVSWDEGGYKTSDK 523
G P+ YG +E A + D SV G P P ++ +G +
Sbjct: 319 GVPLTGLYGSSEVQA--LVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGE 376
Query: 524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GEI + ++ GY +NP T+ D +F TGD+G DG R
Sbjct: 377 S---GEIEIRAPSLMRGYLDNPDATARALTDDG----YFRTGDLGYTRGDGQFVYQTRMG 429
Query: 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNY--CVALVVP 629
D ++L G ++ ++E AL + V + VA V+P
Sbjct: 430 DSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIP 476
|
Length = 540 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 40/174 (22%)
Query: 439 VRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTE-TCA----- 484
V V G +R + GG P+ D +RF AP G +YGL E TCA
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAM--APFGFDAGAAAPSYGLAESTCAVTVPV 323
Query: 485 ---GSTFSEWDDPSVG------RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF 535
G E +G P+P +++ D + + + GEI + G
Sbjct: 324 PGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAA-GVAGREI--GEIEIRGA 380
Query: 536 NVTAGYF-NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
++ +GY P + WF TGD+G + DG L + R K+++ +
Sbjct: 381 SMMSGYLGQAPIDPDD----------WFPTGDLGYLV-DGGLVVCGRAKELITV 423
|
Length = 525 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.88 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.82 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.78 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.57 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.99 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.63 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.32 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.84 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.66 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.49 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 95.92 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.59 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.38 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.26 |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-120 Score=920.63 Aligned_cols=654 Identities=53% Similarity=0.853 Sum_probs=622.4
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
+.++|++...++ +...++++..|++++|+++++++.++.++.+|+++..+.+...||+.|+++++++|.|+||.|+.
T Consensus 20 ~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~ 96 (678)
T KOG1180|consen 20 TAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVY 96 (678)
T ss_pred CccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHH
Confidence 677777776444 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCE-EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHH
Q 004961 138 DRACSFASGLVNFGHNVDTR-AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216 (721)
Q Consensus 138 ~~~~~lA~~L~~~Gv~~gd~-Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 216 (721)
.++.++|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.++.+++.+.+.|.|++++++.+||+.+.++.+
T Consensus 97 ~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl 176 (678)
T KOG1180|consen 97 ERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKL 176 (678)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHH
Confidence 99999999999999997777 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCceEEEEecCCCCCc-cCCccC-CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceee
Q 004961 217 SAVSSSLKTIKNVIYFENDGSEK-DSGVSG-GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294 (721)
Q Consensus 217 ~~~~~~~~~~~~ii~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~ 294 (721)
......++.+++||++++.+.+. .+.+.. ..+++.+++|+++++.++....++.++.|+|+|+|||||||||.|||||
T Consensus 177 ~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVm 256 (678)
T KOG1180|consen 177 KAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVM 256 (678)
T ss_pred HHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence 99999999999999999754333 122221 2357899999999999998877777889999999999999999999999
Q ss_pred eccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecce
Q 004961 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374 (721)
Q Consensus 295 ~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t 374 (721)
++|.|+++.+.+.....+.+++.|+++.++||+|++.+...+.+++.|+++.+.++.++.+.++.+.+++.+++..++||
T Consensus 257 l~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPT 336 (678)
T KOG1180|consen 257 LTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPT 336 (678)
T ss_pred EecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccch
Confidence 99999999999998887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecC
Q 004961 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454 (721)
Q Consensus 375 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 454 (721)
+|.+||++|+++.+.+..++.+.+.+.++||+.+|+++++.++ +++..++++|.++|+++|+.+|++||++++||
T Consensus 337 iM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGG 411 (678)
T KOG1180|consen 337 IMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYILSGG 411 (678)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999886 36777899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc
Q 004961 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534 (721)
Q Consensus 455 ~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g 534 (721)
+||+++.++++..++++++.++||.||+|+..++..+.+...|.+|.|+|+++++++|+++++|.+...| ++|||+|+|
T Consensus 412 apLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~i~G 490 (678)
T KOG1180|consen 412 APLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEILIGG 490 (678)
T ss_pred CCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998777 899999999
Q ss_pred ccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEE
Q 004961 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614 (721)
Q Consensus 535 ~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V 614 (721)
+++..|||+||++|++.|.. .||.+||+|||+|++.+||+|.|++|+||++|+.+||+|+++.||+++...|.|+++||
T Consensus 491 ~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICv 569 (678)
T KOG1180|consen 491 PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICV 569 (678)
T ss_pred CccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEE
Confidence 99999999999999999984 48667999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCC
Q 004961 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEA 694 (721)
Q Consensus 615 ~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~ 694 (721)
++++...+++|+|||++..+..|+++.|+..++++++|++.++++++.++|.++.++.+|.++++|..|++.+++|||++
T Consensus 570 yAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPen 649 (678)
T KOG1180|consen 570 YADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPEN 649 (678)
T ss_pred ecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CccCcccccChHHHHHHHHHHHHhhhC
Q 004961 695 GLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 695 ~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
|++|+..|++|+.++..|+++|+++|+
T Consensus 650 GlvT~A~KLKRk~I~~~~k~ei~~~Y~ 676 (678)
T KOG1180|consen 650 GLVTAALKLKRKEILAAYKKEIDRLYK 676 (678)
T ss_pred cccHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999995
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-104 Score=843.81 Aligned_cols=623 Identities=37% Similarity=0.634 Sum_probs=556.7
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
++.||.....+. ++...+.++..|+++.|++.+..+|+.++|++|... ++ .++|+|+||+|+.
T Consensus 53 ~~~~~s~~~~~~--~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~-------~~~~~~~tY~q~~ 115 (691)
T KOG1256|consen 53 DGSRRSAVLPRE--ELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DG-------KGPYEWLTYKQVY 115 (691)
T ss_pred CCceeeeeccCC--CCCCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cC-------CCCcEEEEHHHHH
Confidence 456666655432 123344567899999999999999999999998533 34 3788999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC-ccchhHH
Q 004961 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD-SKQLKKL 216 (721)
Q Consensus 138 ~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~ 216 (721)
+++.++|.+|+.+|+++++.|+|++.||+||+++.+||...|+++|||+.+++++++.+++++++++++|++ ++....+
T Consensus 116 e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~l 195 (691)
T KOG1256|consen 116 ERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKL 195 (691)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5556666
Q ss_pred Hhhhc--cCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCC-CCCCCCCeEEEEeecCCCCCccee
Q 004961 217 SAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP-SLPSQNGVAVIMYTSGSTGLPKGV 293 (721)
Q Consensus 217 ~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~a~i~~TSGTTG~PKgV 293 (721)
.+... .+|.++.+|.+++........ ....++.+++|+++.+.+......+ .++.|||.|.|+|||||||+||||
T Consensus 196 l~~~~~~~~~~LK~iI~~~~~~~~~~~~--~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGV 273 (691)
T KOG1256|consen 196 LEIKENDSLPSLKAIIQLDEPSDELKEK--AENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGV 273 (691)
T ss_pred HhhcccccCccceeEEEecCCchhhhhh--hhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceE
Confidence 66655 488999999998875433211 1123688999999999998776666 588999999999999999999999
Q ss_pred eeccHHHHHHHHHHHhh---C--CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEee--CccccccccchhhccCccc
Q 004961 294 MITHGNIVATAAAIKTL---I--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKG 366 (721)
Q Consensus 294 ~~sh~~l~~~~~~~~~~---~--~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~--~~~~~~~~~~~~~~~~~~~ 366 (721)
|+||+|+++.+...... . .....+|++++++||+|++........++.|+++.+ +|+..+.+.
T Consensus 274 MLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d---------- 343 (691)
T KOG1256|consen 274 MLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD---------- 343 (691)
T ss_pred EEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH----------
Confidence 99999999976643222 1 123347999999999999999988888899999999 677777777
Q ss_pred cceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-hhhhccccccCCchhhhHHHHHHHHHHHHhCC
Q 004961 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG 445 (721)
Q Consensus 367 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (721)
+++.+||++.+||.+|+++.+.+.+.+.+.+.+++++|++|+++++ ..+..+.... ..++||+++|+++++.+|+
T Consensus 344 -lk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~---~~~~~D~lVf~KI~~~LGg 419 (691)
T KOG1256|consen 344 -LKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS---RDRFADKLVFHKIKQSLGG 419 (691)
T ss_pred -HHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc---cchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999988899999999999999 4443221111 5789999999999999999
Q ss_pred cEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCC
Q 004961 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525 (721)
Q Consensus 446 ~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g 525 (721)
++|.+++|++|+++++..+++..+|++|+++||+|||++.++...+.+...+++|.|+|++++|++|+++.++.+ .+
T Consensus 420 ~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a---~~ 496 (691)
T KOG1256|consen 420 NVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDA---DG 496 (691)
T ss_pred ceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCc---CC
Confidence 999999999999999999999999999999999999998777777777788999999999999999999998865 55
Q ss_pred CcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhc
Q 004961 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
..|||||||++||.|||+||++|+++|+ +| ||+||||+|+||++|.|.|+||+|++||+++||+|.|+.||+++.+
T Consensus 497 ~~GEIcirG~~Vf~GYyK~p~~T~e~id--eD--GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~ 572 (691)
T KOG1256|consen 497 SKGEICVRGPNVFMGYYKDPEKTAEAID--ED--GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKR 572 (691)
T ss_pred CcceEEEecchhceeccCChHHHhhhhc--cc--cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhc
Confidence 6899999999999999999999999998 77 9999999999999999999999999999999999999999999999
Q ss_pred CcccceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEe
Q 004961 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKL 685 (721)
Q Consensus 606 ~p~V~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~ 685 (721)
.+.|.+++|+|...+.+++|+|+|+++....|+.+.++. .+++++|+++++++.+..++.+..++..|..++..+.|.+
T Consensus 573 ~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~-~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l 651 (691)
T KOG1256|consen 573 SLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVK-GTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHL 651 (691)
T ss_pred CCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCc-hhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEE
Confidence 999999999999989999999999999999999977888 6699999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 686 MPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 686 ~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
.+.+|+.++|++|||.|++|..|.++|+++||+||+
T Consensus 652 ~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~ 687 (691)
T KOG1256|consen 652 LPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYK 687 (691)
T ss_pred ecccccccCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999995
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-100 Score=877.18 Aligned_cols=670 Identities=76% Similarity=1.274 Sum_probs=578.7
Q ss_pred cCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEE
Q 004961 51 RGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130 (721)
Q Consensus 51 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~ 130 (721)
+.+++..+++.....++...+.....++++..|+.++|+++++++||++|+.++.+...+.....+|+.|++...++|++
T Consensus 27 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (696)
T PLN02387 27 RGVPVDVGGEPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106 (696)
T ss_pred ceecCCCCCCCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEE
Confidence 44555444444434444333345566778889999999999999999999987754332222223566667777889999
Q ss_pred EeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECc
Q 004961 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (721)
Q Consensus 131 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (721)
+||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++|||+++++++++.++|++++++++|++.
T Consensus 107 ~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~ 186 (696)
T PLN02387 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS 186 (696)
T ss_pred EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCc
Q 004961 211 KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290 (721)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P 290 (721)
+..+.+..+...++.+++++++++......... ....++.+.+|+++...+...+.....+.++|+++|+|||||||.|
T Consensus 187 ~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~P 265 (696)
T PLN02387 187 KQLKKLIDISSQLETVKRVIYMDDEGVDSDSSL-SGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLP 265 (696)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCchhhhhh-hccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCC
Confidence 888888777778888999999875432110000 0112456778998887665443334456789999999999999999
Q ss_pred ceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCcccccee
Q 004961 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370 (721)
Q Consensus 291 KgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (721)
|||++||+|+++.+......++.+.++|++++++|++|++++...+.++..|+++.++++..+.+....+...+..++++
T Consensus 266 KGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~ 345 (696)
T PLN02387 266 KGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASA 345 (696)
T ss_pred CEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHH
Confidence 99999999999988887665436889999999999999999988777889999999988776666544444556677999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEE
Q 004961 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (721)
Q Consensus 371 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v 450 (721)
++||+++++|++++++.+.........+.+++.+|++++..++..+...+....++..+++|.+++++++..+|+++|.+
T Consensus 346 ~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i 425 (696)
T PLN02387 346 LKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFM 425 (696)
T ss_pred hCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999988877778888999999999999988877666666677888999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceE
Q 004961 451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI 530 (721)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl 530 (721)
++||+++++++.++++.++|++++++||+||+++.++.....+...+++|+|+|+++++|+|++++++...+.+++.|||
T Consensus 426 ~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi 505 (696)
T PLN02387 426 LSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEI 505 (696)
T ss_pred EEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceE
Confidence 99999999999999998889999999999999887776666666679999999999999999777777654566778999
Q ss_pred EEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccc
Q 004961 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610 (721)
Q Consensus 531 ~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~ 610 (721)
+|+||+++.|||++|+.|+++|..+++|.|||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.|.
T Consensus 506 ~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~ 585 (696)
T PLN02387 506 VIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVD 585 (696)
T ss_pred EeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCee
Confidence 99999999999999999999995335555699999999999999999999999999997899999999999999999999
Q ss_pred eEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCC
Q 004961 611 NIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPW 690 (721)
Q Consensus 611 ~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~ 690 (721)
+|+|+|++.+.+++|+|+++++.+..|+++.+++..++.++|+++++.+++.+++.+.+++++|+.|++|++|.+++++|
T Consensus 586 ~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~ 665 (696)
T PLN02387 586 NIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPW 665 (696)
T ss_pred EEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCC
Confidence 99999999888999999999999999999999888889999999999999999999998878999999999999999999
Q ss_pred CCCCCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 691 TPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 691 ~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
+|++|++|+++|++|+.+++.|+++|++||+
T Consensus 666 t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 666 TPESGLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred CCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999996
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-92 Score=813.14 Aligned_cols=624 Identities=32% Similarity=0.570 Sum_probs=512.1
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
++.+|+......+ ..+.+...|+.++|+++++++||++|+++++.. ++. .+.++++||+||.
T Consensus 25 ~~~~~~~~~~~~~----~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~Ty~el~ 86 (666)
T PLN02614 25 GPVYRSIFAKDGF----PNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVY 86 (666)
T ss_pred CCcccCccccccc----CCCCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeEHHHHH
Confidence 4455555433332 224566789999999999999999999864211 221 1345679999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHH
Q 004961 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS 217 (721)
Q Consensus 138 ~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 217 (721)
++++++|++|+++|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.++|++++++++|++.+....+.
T Consensus 87 ~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 166 (666)
T PLN02614 87 DIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF 166 (666)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887654443
Q ss_pred hhhc-cCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeec
Q 004961 218 AVSS-SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (721)
Q Consensus 218 ~~~~-~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s 296 (721)
.... ..+.++.++.++........ .....+....+++++...+...........++|+|+|+|||||||.||||++|
T Consensus 167 ~~~~~~~~~l~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt 244 (666)
T PLN02614 167 KTCPNSTEYMKTVVSFGGVSREQKE--EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244 (666)
T ss_pred HhcccccccceEEEEeCCCChHHhh--hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence 3222 12346777776532110000 00001234567888776443222222334689999999999999999999999
Q ss_pred cHHHHHHHHHHHhhC----CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeC--ccccccccchhhccCcccccee
Q 004961 297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSV 370 (721)
Q Consensus 297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~~ 370 (721)
|+|+++.+.+....+ ..+.++|++++++|++|++++...+.+++.|+++++. ++..+.+. +++
T Consensus 245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~ 313 (666)
T PLN02614 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED-----------LGE 313 (666)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence 999998877665443 1467899999999999999987666678899999883 34444444 999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEE
Q 004961 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (721)
Q Consensus 371 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v 450 (721)
++||+++++|++|+.+.+.+.......+.+++++|+++++.+...++... ......++++.++++++++.++++||.+
T Consensus 314 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~lr~~ 391 (666)
T PLN02614 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQ--SHVEASPLCDKLVFNKVKQGLGGNVRII 391 (666)
T ss_pred hCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC--CCcccchHHHHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999887777766677888999998888776554211 1123456888999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcce
Q 004961 451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529 (721)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GE 529 (721)
++||+++++++.++++...+++++++||+||+++.++...+.+ .+.+++|+|+||++++|+|+++++..+ +++|+.||
T Consensus 392 ~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~~GE 470 (666)
T PLN02614 392 LSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTPRGE 470 (666)
T ss_pred EEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCCCce
Confidence 9999999998766655443589999999999986655444333 246899999999999999855443322 55789999
Q ss_pred EEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCccc
Q 004961 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609 (721)
Q Consensus 530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V 609 (721)
|+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|+||+|.|||++|.+||+|
T Consensus 471 l~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V 545 (666)
T PLN02614 471 ICIRGKTLFSGYYKREDLTKEVL---ID--GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV 545 (666)
T ss_pred EEEcCCcccccccCCHHHhhhhh---cc--CCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCe
Confidence 99999999999999999999999 56 89999999999999999999999999998789999999999999999999
Q ss_pred ceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCC
Q 004961 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEP 689 (721)
Q Consensus 610 ~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~ 689 (721)
.+|+|+|++.+.+++|+|+|+.+.+..|+++.++.. ++.++|+++++++.+.+++.+.+++++|+.|+++++|.+++++
T Consensus 546 ~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~ 624 (666)
T PLN02614 546 DSVWVYGNSFESFLVAIANPNQQILERWAAENGVSG-DYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVP 624 (666)
T ss_pred eEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCc-CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCC
Confidence 999999998788999999999999999999888873 6889999999999999999998876889999999999999999
Q ss_pred CCCCCCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 690 WTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 690 ~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
|++++|++|+++|++|+.+.+.|+++|++||+
T Consensus 625 f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~ 656 (666)
T PLN02614 625 FDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK 656 (666)
T ss_pred CCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999995
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-91 Score=800.09 Aligned_cols=613 Identities=21% Similarity=0.345 Sum_probs=511.8
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
+++||.....+. .+|....|+.++|.++++++|+++|+++.+ +| ..|+++||+|+.
T Consensus 43 ~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g--------~~~~~~Ty~el~ 98 (746)
T PTZ00342 43 SSVYCMKDHKKK------SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CG--------EPQNYITYGNFF 98 (746)
T ss_pred CCceecCchhhc------ccccccchHHHHHHHHHhhcCCceeEeccC----------CC--------CCceeeeHHHHH
Confidence 667774443322 566778999999999999999999997521 22 135689999999
Q ss_pred HHHHHHHHHHHhC---CCCCC-----------CEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCc
Q 004961 138 DRACSFASGLVNF---GHNVD-----------TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQV 203 (721)
Q Consensus 138 ~~~~~lA~~L~~~---Gv~~g-----------d~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~ 203 (721)
++++++|++|.++ |+++| |+|+|+++|++||+++++||+++|+++||++++++++++.++|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 9999999999974 99999 999999999999999999999999999999999999999999999999
Q ss_pred eEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc----------------CC-------------------------
Q 004961 204 TTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD----------------SG------------------------- 242 (721)
Q Consensus 204 ~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~----------------~~------------------------- 242 (721)
+++|++.+..+.+......+|.++.+++++....... ..
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999988888888777778889999999875321100 00
Q ss_pred ------------cc--CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH
Q 004961 243 ------------VS--GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (721)
Q Consensus 243 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (721)
+. ....+.....|+++...... ........++|+|+|+|||||||.||||++||+|+++.+....
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~ 337 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC 337 (746)
T ss_pred ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence 00 00012234455555443211 1222345789999999999999999999999999999887665
Q ss_pred hhC-CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeC--ccccccccchhhccCccccceeecceEEeechHHHHH
Q 004961 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (721)
Q Consensus 309 ~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 385 (721)
... ....+.|++++++|++|++++...+.+++.|+++++. ++..+.+. +++++||+++++|++|++
T Consensus 338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~~ 406 (746)
T PTZ00342 338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFNR 406 (746)
T ss_pred hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHHH
Confidence 432 0233568999999999999998888889999999983 45555555 999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHH--HHHHHHHHhCCcEEEEEecCCCCCHHHHH
Q 004961 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI--VFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (721)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~v~~gG~~l~~~~~~ 463 (721)
|.+.+...+...+.+++.+|++++..+..... +...++++.+ +++++|+.+|++||.+++||+++++++.+
T Consensus 407 i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~ 479 (746)
T PTZ00342 407 IYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE 479 (746)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHH
Confidence 99988888887888899999999988877543 2234566665 79999999999999999999999999999
Q ss_pred HHHHhhCCceecccccchhcccccccCCCCCCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEcccccccccc
Q 004961 464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (721)
Q Consensus 464 ~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (721)
+++..+|++++++||+||+++.++...+.+.+.+++|+|+ |+++++|+|+++.... ..++.|||+|+||++|.|||
T Consensus 480 ~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~---~~~~~GEl~vrGp~v~~GY~ 556 (746)
T PTZ00342 480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKAT---DTLPKGELLIKSDSIFSGYF 556 (746)
T ss_pred HHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccC---CCCCceEEEEecCccccccc
Confidence 9998899999999999999877776666666779999998 9999999986643322 24467999999999999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCce
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNY 622 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~~ 622 (721)
++|++|+++|. .| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|+....+
T Consensus 557 ~~pe~T~~~f~--~d--GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~ 632 (746)
T PTZ00342 557 LEKEQTKNAFT--ED--GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDG 632 (746)
T ss_pred CChhhhhhhcC--cC--CcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccc
Confidence 99999999996 57 999999999999999999999999999988899999999999999999999999999876679
Q ss_pred EEEEEEcChHHHHHHHHHh------CCCcccHHH-----HhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCC
Q 004961 623 CVALVVPSHKALEKWAHEA------SIKYEDLSE-----LCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWT 691 (721)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~ 691 (721)
++|+|+|+.+.+.+|+++. +++..++.+ .++++++.+.+.+++.+..++.+|++|+++++|.+++++|+
T Consensus 633 ~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t 712 (746)
T PTZ00342 633 PLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWD 712 (746)
T ss_pred cEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCC
Confidence 9999999999999999864 454445555 44666789999999999987679999999999999999999
Q ss_pred CCCCccCcccccChHHHHHHHH---HHHHhhhC
Q 004961 692 PEAGLVTAALKIKREQLKAKFK---DDLQMLYQ 721 (721)
Q Consensus 692 p~~~~~t~~gKi~R~~l~~~~~---~~i~~~Y~ 721 (721)
| ++++|++.|++|+.+.+.|+ +.|++||+
T Consensus 713 ~-~~~lTpt~KlkR~~v~~~y~~~i~~i~~~y~ 744 (746)
T PTZ00342 713 T-NNYLTPTFKVKRFYVFKDYAFFIDQVKKIYK 744 (746)
T ss_pred C-CCccChhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9 56899999999999999999 66678885
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-91 Score=802.29 Aligned_cols=607 Identities=35% Similarity=0.624 Sum_probs=523.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004961 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 157 (721)
.+...|++++|+++++++|+++|+.++... ++. .+.++++||+||.++++++|++|+++|+++||+
T Consensus 40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~------~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~ 105 (651)
T PLN02736 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRV--------DGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGAC 105 (651)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 356689999999999999999999754210 222 235678999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCC
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (721)
|+|+++|++||+++++||+++|+++||+++.++++++.++|++++++++|++.+..+.+......++.++.++..+....
T Consensus 106 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 185 (651)
T PLN02736 106 VGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADE 185 (651)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCch
Confidence 99999999999999999999999999999999999999999999999999998887777777777888888887653211
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCC
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (721)
.. .... ...+....+++++...............++|+++|+|||||||.||||++||+|+++.+.+....+ .+.++
T Consensus 186 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~ 262 (651)
T PLN02736 186 PL-PSLP-SGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPS 262 (651)
T ss_pred hh-hhhh-ccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCC
Confidence 00 0000 001345678888876543332223445789999999999999999999999999999998888777 88999
Q ss_pred cEEEeccChHHHHHHHHHHHHHHhcceEeeCc--cccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHH
Q 004961 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGS--TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 395 (721)
|++++++|++|++++...+.+++.|+++++.+ +..+.+. +++++||+++++|++++.+.+.......
T Consensus 263 d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~ 331 (651)
T PLN02736 263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIFCSVPRLYNRIYDGITNAVK 331 (651)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEecchHHHHHHHHHHHHHHh
Confidence 99999999999999988888899999998843 3334444 9999999999999999999998888888
Q ss_pred hhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceec
Q 004961 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (721)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~ 475 (721)
..+.+++++|+++++.+...+... ..+.+.++.+++++++..+|+++|.+++||+++++++.++++..+|+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~ 406 (651)
T PLN02736 332 ESGGLKERLFNAAYNAKKQALENG-----KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLE 406 (651)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEE
Confidence 888899999999888776554311 122346788889999999999999999999999999999999888999999
Q ss_pred ccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC
Q 004961 476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (721)
+||+||+++.++.....+...+++|+|+|+++++|+|.+++.+...+.+++.|||+|+||+++.|||++|+.|+++|.
T Consensus 407 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~-- 484 (651)
T PLN02736 407 GYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID-- 484 (651)
T ss_pred EechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc--
Confidence 999999987776665555667899999999999999965554433345667899999999999999999999999996
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCceEEEEEEcChHHHH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALE 635 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~~~~A~vv~~~~~~~ 635 (721)
.| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||+|.+|+|+|....+.++|+|+++++.+.
T Consensus 485 ~d--gw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~ 562 (651)
T PLN02736 485 ED--GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLK 562 (651)
T ss_pred cC--CCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHH
Confidence 56 8999999999999999999999999999878999999999999999999999999997656789999999999999
Q ss_pred HHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
.|++..+++..++.++|+++++++.+.++|.+.+++++|+.|++|++|++++++|++++|++|++||++|++|+++|+++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~ 642 (651)
T PLN02736 563 AWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKA 642 (651)
T ss_pred HHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence 99988888877899999999999999999999988679999999999999999999999999999999999999999999
Q ss_pred HHhhhC
Q 004961 716 LQMLYQ 721 (721)
Q Consensus 716 i~~~Y~ 721 (721)
|++||+
T Consensus 643 i~~~y~ 648 (651)
T PLN02736 643 ISDMYA 648 (651)
T ss_pred HHHHHh
Confidence 999995
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-90 Score=795.51 Aligned_cols=622 Identities=31% Similarity=0.563 Sum_probs=514.6
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
++++|+....+.+. .. .+...|++++|+++++++|+++|++.+... ++. .++++++||+|+.
T Consensus 23 ~~~~~~~~~~~~~~---~~-~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~~------~g~~~~~Ty~el~ 84 (660)
T PLN02861 23 GPVYRSIYAKDGLL---DL-PADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DSK------VGPYVWLTYKEVY 84 (660)
T ss_pred CCcccccccccccc---cC-CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCceEEEHHHHH
Confidence 66677665554422 11 255689999999999999999999865211 222 2456789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHH
Q 004961 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS 217 (721)
Q Consensus 138 ~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 217 (721)
++++++|++|.++|+++||+|+|+++|++||++++|||+++|+++|||++.++.+++.++|++++++++|++.+..+.+.
T Consensus 85 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 85 DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766665
Q ss_pred hhhccCC-CceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeec
Q 004961 218 AVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (721)
Q Consensus 218 ~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s 296 (721)
.....++ .++.++.++......... ....+....+++++...+... .......++|+|+|+|||||||.||||++|
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lt 241 (660)
T PLN02861 165 SCLPKCSSNLKTIVSFGDVSSEQKEE--AEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILT 241 (660)
T ss_pred HhhhhCCCCCEEEEEECCCChhhhhh--hhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEe
Confidence 5444443 577888776432110000 001123456788877544321 112344689999999999999999999999
Q ss_pred cHHHHHHHHHHHhhCC----CCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeC--ccccccccchhhccCcccccee
Q 004961 297 HGNIVATAAAIKTLIP----NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSV 370 (721)
Q Consensus 297 h~~l~~~~~~~~~~~~----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~~ 370 (721)
|+|+++.+......+. .+.++|++++++|++|++++...+.+++.|+++++. ++..+.+. +++
T Consensus 242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~ 310 (660)
T PLN02861 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMED-----------VQA 310 (660)
T ss_pred cHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence 9999998877655441 147889999999999999987766789999999883 44444444 999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEE
Q 004961 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (721)
Q Consensus 371 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v 450 (721)
++||+++++|++|+.+.+....+....+.+++.+|+++.+.++..+..... .....+.++.++++++|+.+|+++|.+
T Consensus 311 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~lg~~lr~~ 388 (660)
T PLN02861 311 LKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK--QEEASPRLDRLVFDKIKEGLGGRVRLL 388 (660)
T ss_pred hCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CcCccHhHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999999888888888889999999999998887652211 112245788889999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhhC-CceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcc
Q 004961 451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528 (721)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~G 528 (721)
++||+++++++.++++ .++ ..++|+||+||+++.++...... ...+++|+|+|+++++|+|.++.++.. ..+++.|
T Consensus 389 ~~Ggapl~~~~~~~~~-~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~~G 466 (660)
T PLN02861 389 LSGAAPLPRHVEEFLR-VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVPRG 466 (660)
T ss_pred EECCCCCCHHHHHHHH-HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCCce
Confidence 9999999999876555 455 47999999999987655443322 246899999999999999854433222 2355789
Q ss_pred eEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcc
Q 004961 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608 (721)
Q Consensus 529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~ 608 (721)
||+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|+||+|.|||++|.+||.
T Consensus 467 Ei~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~ 541 (660)
T PLN02861 467 EICLRGNTLFSGYHKRQDLTEEVL---ID--GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL 541 (660)
T ss_pred eEEEcCCcccccccCCHHHHHhhh---hc--cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCC
Confidence 999999999999999999999999 56 8999999999999999999999999999878999999999999999999
Q ss_pred cceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCC
Q 004961 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE 688 (721)
Q Consensus 609 V~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~ 688 (721)
|.+|+|+|.++.++++|+|+++.+.+..|+.+.++. .++.++|++++....+.+++.+.+++..|+.|++++++.+.++
T Consensus 542 V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~ 620 (660)
T PLN02861 542 IASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKT-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPN 620 (660)
T ss_pred eeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCC
Confidence 999999999877889999999999999999977654 3578899999999999999999998668999999999999999
Q ss_pred CCCCCCCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 689 PWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 689 ~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
+|++++|++|+++|++|+++.+.|+++|++||+
T Consensus 621 ~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~ 653 (660)
T PLN02861 621 PFDIERDLITPTFKLKRPQLLKYYKDCIDQLYS 653 (660)
T ss_pred CCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999995
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-91 Score=755.43 Aligned_cols=585 Identities=32% Similarity=0.531 Sum_probs=497.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...++..++.+.++.+|+.+|+.... .+.|+.+||+|+.+++.++|++|++.|+..||+|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrva 74 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDRVA 74 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 45789999999999999988887542 35678999999999999999999999997799999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-hHHHhhhccCCCceEEEEecC---C
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKLSAVSSSLKTIKNVIYFEN---D 235 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~ii~~~~---~ 235 (721)
|++.|++||+++.+||+.+|++.||++++.+++++.++|++++++++|++.... +.+..+...++.+...+.... .
T Consensus 75 i~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (613)
T COG1022 75 IFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVRE 154 (613)
T ss_pred EEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998554 555545444433222221111 0
Q ss_pred CCC-ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC-
Q 004961 236 GSE-KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN- 313 (721)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~- 313 (721)
... ........ .......+ .+.. ........++.+||+|.|+|||||||.|||||+||+|+++++..+...+ .
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-~~ 229 (613)
T COG1022 155 AVEAKALVLEVF-PDEGISLF-LIDS--AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-PP 229 (613)
T ss_pred ccchhhcccccc-ccccchhh-hhcc--cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-CC
Confidence 000 00000000 00011111 1111 1111112567899999999999999999999999999999999999998 6
Q ss_pred CCCCcEEEeccChHHHHHHHH-HHHHHHhcceEee-CccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
.+++|++++++|++|++++.. ....+..|+++.+ .++..+.+. +++++||++++||.+|+.+.+.+.
T Consensus 230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I~ 298 (613)
T COG1022 230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGIM 298 (613)
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHHH
Confidence 899999999999999999987 5556666766666 677777766 999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccC-CchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW-GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
+++...+..++++|+++++.+.........+.. .......|+++|+++++.+|+++|++++||+++++++..+++.. |
T Consensus 299 ~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-G 377 (613)
T COG1022 299 EKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-G 377 (613)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-C
Confidence 999999999999999999886543321111111 11223589999999999999999999999999999999999974 8
Q ss_pred CceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004961 471 APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
+++.++||+|||+++++++++.....+++|+|+|++++||+| .|||+||||+||+|||+||++|++
T Consensus 378 i~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Tae 443 (613)
T COG1022 378 IPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAE 443 (613)
T ss_pred CCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhh
Confidence 999999999999999999999999999999999999999997 399999999999999999999999
Q ss_pred ccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCceEEEEEEcC
Q 004961 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPS 630 (721)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~~~~A~vv~~ 630 (721)
+|+ +| |||+|||+|.+|++|+|+|+||+||+||+++|+||+|+.||+.+.++|.|.+++|+| .++.+++|+|+|+
T Consensus 444 af~--~D--GWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~ 518 (613)
T COG1022 444 AFT--ED--GWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPD 518 (613)
T ss_pred hcc--cc--CCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCC
Confidence 998 78 999999999999999999999999999999999999999999999999999999999 7788999999999
Q ss_pred hHHHHHHHHHhCCC-cccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 631 HKALEKWAHEASIK-YEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 631 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
.+.+.+|+...+.. ..+..+++.++++.+.+...+....+ ++..++.+..+.+.+..|+++++.+|++.|++|..+.
T Consensus 519 ~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~ 596 (613)
T COG1022 519 FDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVIL 596 (613)
T ss_pred HHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHH
Confidence 99999999976633 46788999999999999999998886 5599999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC
Q 004961 710 AKFKDDLQMLYQ 721 (721)
Q Consensus 710 ~~~~~~i~~~Y~ 721 (721)
+.|+++|+.+|.
T Consensus 597 ~~~~~~i~~~y~ 608 (613)
T COG1022 597 DRYKDEIEAVYS 608 (613)
T ss_pred HhhhhHHHHHhh
Confidence 999999999984
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-89 Score=782.31 Aligned_cols=624 Identities=32% Similarity=0.570 Sum_probs=521.5
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHH
Q 004961 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (721)
Q Consensus 58 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~ 137 (721)
++.+|+....+.++. ..+...|++++|++.++++|+++|+.++... ++. .++++++||+|+.
T Consensus 22 ~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el~ 83 (660)
T PLN02430 22 GPVYRNLLSKKGFPP----IDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVY 83 (660)
T ss_pred CCccccccccccccC----CCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHHH
Confidence 566666554333221 2256789999999999999999999875311 222 2456789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-hHH
Q 004961 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKL 216 (721)
Q Consensus 138 ~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~ 216 (721)
++++++|++|.+.|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.... ..+
T Consensus 84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987643 333
Q ss_pred HhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeec
Q 004961 217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (721)
Q Consensus 217 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s 296 (721)
.......+.++.++.++........ .....+....+|+++...+...+.......++|+++|+|||||||.||||++|
T Consensus 164 ~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lt 241 (660)
T PLN02430 164 EPDCKSAKRLKAIVSFTSVTEEESD--KASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241 (660)
T ss_pred hhhcccCCCceEEEEECCCChHHhh--hhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEee
Confidence 3333445677888887643211100 00011345678888876654433333445689999999999999999999999
Q ss_pred cHHHHHHHHHHHhhC----CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeC--ccccccccchhhccCcccccee
Q 004961 297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSV 370 (721)
Q Consensus 297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~~ 370 (721)
|+|+++.+.+..... ..++++|++++++|++|++++...+.++..|+++++. ++..+.+. +++
T Consensus 242 h~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~ 310 (660)
T PLN02430 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LME 310 (660)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHH
Confidence 999998877654321 1467899999999999999988767778999999873 33344444 899
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEE
Q 004961 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (721)
Q Consensus 371 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v 450 (721)
++||++.++|.+|+.+.+.+.......+++++.+|+++++.+...++.... .....++++.+++++++..+|+++|.+
T Consensus 311 ~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~ 388 (660)
T PLN02430 311 LKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLL 388 (660)
T ss_pred hCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999999888888777889999999999999887753221 122456889999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcce
Q 004961 451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529 (721)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GE 529 (721)
++||+++++++.++++...+++++++||+||+++.++...+.+ ...+++|+|.|+++++|+|.++.++.+ .+.++.||
T Consensus 389 ~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GE 467 (660)
T PLN02430 389 ISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGE 467 (660)
T ss_pred EECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcce
Confidence 9999999999988887654578999999999988766654433 346899999999999999865555443 34556899
Q ss_pred EEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCccc
Q 004961 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609 (721)
Q Consensus 530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V 609 (721)
|+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|
T Consensus 468 i~vrg~~v~~GY~~~~e~t~~~~---~d--Gw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V 542 (660)
T PLN02430 468 ICVRGKCLFSGYYKNPELTEEVM---KD--GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIV 542 (660)
T ss_pred EEecCCCccccccCChHHhhhhh---hc--cceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCe
Confidence 99999999999999999999998 67 89999999999999999999999999998889999999999999999999
Q ss_pred ceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCC
Q 004961 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEP 689 (721)
Q Consensus 610 ~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~ 689 (721)
.+|+|+|+....+++|+|+++++.+..|++..++. .+..++|+++++++.+.+++.+.+++.+|+.|+++++|.+++++
T Consensus 543 ~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~ 621 (660)
T PLN02430 543 EDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFT-GSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKP 621 (660)
T ss_pred eEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCC-CCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCC
Confidence 99999998766899999999999999999988776 35888999999999999999999876789999999999999999
Q ss_pred CCCCCCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 690 WTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 690 ~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
|++++|++|+++|++|+.+.+.|+++|++||+
T Consensus 622 ~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 653 (660)
T PLN02430 622 FDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653 (660)
T ss_pred CCCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999995
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-88 Score=783.60 Aligned_cols=620 Identities=33% Similarity=0.581 Sum_probs=515.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCceeeeeecccccccc--CCCc--ceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCC
Q 004961 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTA--SDGR--KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH 152 (721)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~--~dg~--~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv 152 (721)
.|+...|++++|+++++++||++|+++++..+.+.+.. .+|+ .|.....++++++||+||.++++++|++|.++|+
T Consensus 64 ~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv 143 (700)
T PTZ00216 64 EWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGL 143 (700)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCC
Confidence 34556799999999999999999999874221111000 0221 1223334567899999999999999999999999
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhcc--CCCceEEE
Q 004961 153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS--LKTIKNVI 230 (721)
Q Consensus 153 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~ii 230 (721)
++||+|+|+++|++||+++++||+++|++++|+++.++++++.++|++++++++|++......+...... .+.. .++
T Consensus 144 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii 222 (700)
T PTZ00216 144 TKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TII 222 (700)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEE
Confidence 9999999999999999999999999999999999999999999999999999999998766555443322 2333 455
Q ss_pred EecCCCCCccCCccCCCCCceEeeHHHHHhcCCC--CCC-CCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH
Q 004961 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR--SPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (721)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (721)
.++...... ...+..+.+|+++...+.. ... ......++|+++|+|||||||.||||++||+|+++.+.+.
T Consensus 223 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~ 296 (700)
T PTZ00216 223 YLDSLPASV------DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILAL 296 (700)
T ss_pred EECCCcccc------ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHH
Confidence 655422110 0124567889998776521 111 1234468999999999999999999999999999988776
Q ss_pred HhhC----CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHH
Q 004961 308 KTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF 383 (721)
Q Consensus 308 ~~~~----~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~ 383 (721)
...+ ..+.++|++++++|++|++++.....++..|+++++.++..+.+. ......++++++||++.++|+++
T Consensus 297 ~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~----~~~~~~~l~~~~pT~~~~vP~~~ 372 (700)
T PTZ00216 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDT----FARPHGDLTEFRPVFLIGVPRIF 372 (700)
T ss_pred HhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhh----hccccchHHHcCCcEEEechHHH
Confidence 5443 124688999999999999998776667888998888766655543 11122248899999999999999
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHH
Q 004961 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (721)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~ 463 (721)
+.+.+.........+.+++++|++++..++..+. .+...++++.++|++++..+|+++|.+++||+++++++.+
T Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~ 446 (700)
T PTZ00216 373 DTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK------EGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQE 446 (700)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH------cCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH
Confidence 9999988877777788999999999988887664 2334568899999999999999999999999999999999
Q ss_pred HHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 464 ~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
+++..++ +++|+||+||+++.++.....+...+++|+|+||++++|+|.++. ...+.+++.|||+|+|++++.|||+
T Consensus 447 ~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~--~~~~~~~~~GEL~vrG~~v~~GY~~ 523 (700)
T PTZ00216 447 FVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEY--KHTDTPEPRGEILLRGPFLFKGYYK 523 (700)
T ss_pred HHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhh--ccCCCCCCCceEEEcCCcccchhcC
Confidence 9988888 999999999998777666555566799999999999999995431 1224466789999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccce--EEEEecCCCc
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPFHN 621 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~--~~V~g~~~~~ 621 (721)
+|+.|+++|. .| |||+|||+|++|+||+|+|+||+||+||+.+|++|+|+|||++|.+||.|.+ ++|++.+++.
T Consensus 524 ~pe~T~~~f~--~d--Gw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~ 599 (700)
T PTZ00216 524 QEELTREVLD--ED--GWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARS 599 (700)
T ss_pred ChhHhhhhcc--cc--CCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCc
Confidence 9999999997 66 8999999999999999999999999999667999999999999999999997 5777777788
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccc
Q 004961 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 701 (721)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~g 701 (721)
+++|+|+++.+.+..|+++.++. .++.++|+++++.+.+.+++.+.+++.+|..|++|++|.+++++|++++|++|+++
T Consensus 600 ~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~ 678 (700)
T PTZ00216 600 YICALVLTDEAKAMAFAKEHGIE-GEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAM 678 (700)
T ss_pred eEEEEEecCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhh
Confidence 99999999999999999988876 56889999999999999999999887899999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhhhC
Q 004961 702 KIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 702 Ki~R~~l~~~~~~~i~~~Y~ 721 (721)
|++|+++.+.|+++|++||+
T Consensus 679 K~~R~~i~~~y~~~i~~ly~ 698 (700)
T PTZ00216 679 KLKRRVIDERYADLIKELFA 698 (700)
T ss_pred ccchHHHHHHHHHHHHHHhc
Confidence 99999999999999999995
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-81 Score=625.53 Aligned_cols=511 Identities=24% Similarity=0.325 Sum_probs=435.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++++..+++.||+.|+++.. .|. ++||+|+.+.++++|++|..+|+++||||+|
T Consensus 49 ~~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~kGDrVgv 107 (596)
T KOG1177|consen 49 SETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLKKGDRVGV 107 (596)
T ss_pred cccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCCCCCEEEE
Confidence 4899999999999999999999853 443 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhh-------------cc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVS-------------SS 222 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~-------------~~ 222 (721)
+.||+.+|+..+|||.++|.+.|++||.+..+++++.|++.+++++|+.+.+. +.+.++. +.
T Consensus 108 wgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~ 187 (596)
T KOG1177|consen 108 WGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSEL 187 (596)
T ss_pred ecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999986542 2222222 24
Q ss_pred CCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCC-----CCCCCCCeEEEEeecCCCCCcceeeecc
Q 004961 223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP-----SLPSQNGVAVIMYTSGSTGLPKGVMITH 297 (721)
Q Consensus 223 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~a~i~~TSGTTG~PKgV~~sh 297 (721)
+|.++++|..+++.. ....+.++|+...+....... ....|||++.|.|||||||.|||+.+||
T Consensus 188 lp~lthvi~~~ed~~-----------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH 256 (596)
T KOG1177|consen 188 LPELTHVILADEDHP-----------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSH 256 (596)
T ss_pred cccceEEEecCCCCc-----------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeeh
Confidence 678888888774432 234577888887765533221 3457899999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEE
Q 004961 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376 (721)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l 376 (721)
.|++++.......+ ++.++++++...|++|.+|... .+.+|..|+|+++++|.... +..+.+|+++++|.+
T Consensus 257 ~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~-------k~alqai~~ekcT~l 328 (596)
T KOG1177|consen 257 YNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDP-------KDALQAISNEKCTTL 328 (596)
T ss_pred hhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCCh-------HHHHHHHHhhceEEE
Confidence 99999999999998 9999999999999999999654 78899999999994443221 122333999999999
Q ss_pred eechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCC
Q 004961 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456 (721)
Q Consensus 377 ~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~ 456 (721)
+++|+++..+++.... .+...+++|.++.||++
T Consensus 329 ~gtPtM~~Dlln~~~~-----------------------------------------------~~~~~s~lr~~vigGa~ 361 (596)
T KOG1177|consen 329 YGTPTMFVDLLNIPQK-----------------------------------------------QQVDLSSLRKGVIGGAP 361 (596)
T ss_pred ecChHHHHHHhcchhh-----------------------------------------------ccCchhhhhhheeCCCC
Confidence 9999999999864321 22233689999999999
Q ss_pred CCHHHHHHHHHhhCC-ceecccccchhcccccccCCCCC---CCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEE
Q 004961 457 LSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532 (721)
Q Consensus 457 l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v 532 (721)
+|+++.+.+.+.+++ .+..+||+|||+++.+.....+. +..++|+.+++.+.+|+| .+|...+ .|..||||+
T Consensus 362 ~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~---~~~~Gel~i 437 (596)
T KOG1177|consen 362 VSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVP---LGTKGELLI 437 (596)
T ss_pred CCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccc---cCCCceEEE
Confidence 999999999887765 47789999999988887776655 347999999999999999 6665544 667899999
Q ss_pred ccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceE
Q 004961 533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNI 612 (721)
Q Consensus 533 ~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~ 612 (721)
||++.|.|||+++++|.++.. .| +||+|||+|.+|++|.++|+||.||+|+ +||++|+|.|||+.|.+||.|.++
T Consensus 438 RGY~tMl~Ywg~~~kT~eti~--~d--rW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a 512 (596)
T KOG1177|consen 438 RGYSTMLGYWGEEEKTKETIG--ND--RWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEA 512 (596)
T ss_pred EechhheeecCCcccchhhcc--cc--cceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeE
Confidence 999999999999999999976 66 9999999999999999999999999998 799999999999999999999999
Q ss_pred EEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCC
Q 004961 613 MIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEP 689 (721)
Q Consensus 613 ~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~ 689 (721)
.|+|++|+. .++|+|-+..+... ....++|+++|+ ++|.+|++|+.|+++++.
T Consensus 513 ~VVGV~D~R~GE~VCA~vRLqe~~e~-----------------------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~F 568 (596)
T KOG1177|consen 513 HVVGVPDERLGEEVCACVRLQEGAEG-----------------------KTTAETLKAMCK-GKLAHFKIPKYFVFVDEF 568 (596)
T ss_pred EEEccCCCcccceEEEEEEeeccccc-----------------------cccHHHHHHHHh-cccccccCCcEEEEeccC
Confidence 999999875 48898888765411 012489999999 999999999999999996
Q ss_pred CCCCCCccCcccccChHHHHHHHHHHHH
Q 004961 690 WTPEAGLVTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 690 ~~p~~~~~t~~gKi~R~~l~~~~~~~i~ 717 (721)
| +|-+|||+|-+++++++.++.
T Consensus 569 --P----lT~tGKIqKFeir~~~k~~l~ 590 (596)
T KOG1177|consen 569 --P----LTTTGKIQKFEIREMSKGHLG 590 (596)
T ss_pred --c----ccccccchhHHHHHHHHhhcc
Confidence 7 999999999999999997654
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=670.15 Aligned_cols=477 Identities=27% Similarity=0.390 Sum_probs=402.6
Q ss_pred EEeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004961 130 WQTYGEVFDRACSFASGLVNFG--HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~G--v~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
.+||+|+.+++.++|.+|.++| +++||+|++++||++++.++++||+.+|+++.|+||.+.+.++.+.+++++++++|
T Consensus 45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif 124 (537)
T KOG1176|consen 45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF 124 (537)
T ss_pred EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence 7999999999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred ECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEee-HHHHHhcCCCCCCCCCCCCCCCeEEEEeecCC
Q 004961 208 CDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286 (721)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT 286 (721)
++.+..+.+......+. ..++++....... .........+ +..+...+.... ..+.+.+|++.|.|||||
T Consensus 125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGT 195 (537)
T KOG1176|consen 125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVI-----SISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGT 195 (537)
T ss_pred EcCchHHHHHHHHhhcC--CceEEEecccCcc-----ccccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCC
Confidence 99999998887776655 3444444321100 0000011111 333333222211 455677999999999999
Q ss_pred CCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHH-HHhcceEee---Cccccccccchhhcc
Q 004961 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGY---GSTLTMTDTSSKIKK 362 (721)
Q Consensus 287 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~-l~~G~~~~~---~~~~~~~~~~~~~~~ 362 (721)
||.||||++||+|++.+........ .+...|+.++.+|++|.+|+...+.+ +..|+++++ +++..+++.
T Consensus 196 Tg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~------ 268 (537)
T KOG1176|consen 196 TGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL------ 268 (537)
T ss_pred CCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH------
Confidence 9999999999999999988777666 77789999999999999999987775 455555555 466666666
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
+++|++|+++++|.++..|.+... ....
T Consensus 269 -----i~kykvt~~~~vP~~~~~l~~~p~-----------------------------------------------~~~~ 296 (537)
T KOG1176|consen 269 -----IEKYKVTHLFLVPPVLNMLAKSPI-----------------------------------------------VKKY 296 (537)
T ss_pred -----HHHhCEEEEEcChHHHHHHhcCCc-----------------------------------------------cCcc
Confidence 999999999999999999987421 0112
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhhC-CceecccccchhcccccccCCCCC-CCCccCCCcCcceEEEEecCCCCccc
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDEGGYKT 520 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~p~~~v~i~d~~~~~~~~ 520 (721)
.++++|.+.+||+++++++.+.+++.++ ..+.++||+||+++.++.+...+. +++++|++++++.++|.+ ++|..+
T Consensus 297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l- 374 (537)
T KOG1176|consen 297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSL- 374 (537)
T ss_pred cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCCC-
Confidence 3369999999999999999999999998 889999999999988887776664 779999999988888887 777654
Q ss_pred CCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHH
Q 004961 521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE 600 (721)
Q Consensus 521 ~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE 600 (721)
++++.||||++|++++.|||+||++|++.|. .+ |||||||+|++|+||+|+|+||.||+||. +|++|+|.|||
T Consensus 375 --~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~--~~--GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~EiE 447 (537)
T KOG1176|consen 375 --GPNQTGEICVRGPQVMKGYLKNPEATKEAFD--DD--GWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAEIE 447 (537)
T ss_pred --CCCCceEEEEECcccchhhcCChHHHHhhcc--cC--CccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHHHH
Confidence 5889999999999999999999999999996 55 99999999999999999999999999997 69999999999
Q ss_pred HHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC
Q 004961 601 AALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF 677 (721)
Q Consensus 601 ~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 677 (721)
++|.+||.|.||||+|.+|+. .++|+||++++.. + + .++|.++++ ++|++|
T Consensus 448 ~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~--------l-----t------------e~di~~~v~-k~l~~y 501 (537)
T KOG1176|consen 448 AVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGST--------L-----T------------EKDIIEYVR-KKLPAY 501 (537)
T ss_pred HHHHhCCCccEEEEEcccccccCCcceEEEEecCCCc--------C-----C------------HHHHHHHHH-hhCChh
Confidence 999999999999999999885 5999999987431 1 1 389999999 999999
Q ss_pred ccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 678 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 678 ~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
++|+.++|++++ | +|++|||+|+.|++++.+.
T Consensus 502 ~~~~~V~Fvd~l--P----Ks~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 502 KLPGGVVFVDEL--P----KTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred hccCeEEEeccC--C----CCCcchHHHHHHHHHHHhc
Confidence 999999999999 6 9999999999999999864
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=661.78 Aligned_cols=509 Identities=30% Similarity=0.424 Sum_probs=417.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...++.++++++++++|+++|+.+. +. . .++||+||.++++++|+.|++.|+++||+|+
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~~------------~~-------~--~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVa 67 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIFL------------GR-------G--GRLTYRELDRRANRLAAALQALGVKPGDRVA 67 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEEc------------CC-------C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 4579999999999999999999873 22 0 1499999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
|+++|++++++++|||+++|++++|+||.+...++.++++++++++++++....+.+.......+....+..........
T Consensus 68 il~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (534)
T COG0318 68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL 147 (534)
T ss_pred EECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999885555555554443333333322111000
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC--CCCC
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN--PGRS 317 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~ 317 (721)
. .+++++..............+++|+|+|+|||||||.||||++||+|++.+.......+ . ++++
T Consensus 148 -----------~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~ 214 (534)
T COG0318 148 -----------P-ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPD 214 (534)
T ss_pred -----------c-ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCC
Confidence 0 24555533222222222226799999999999999999999999999999998888887 6 8999
Q ss_pred cEEEeccChHHHHHHHHHHH-HHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHh
Q 004961 318 DVYLAYLPLAHVLELAAESI-MLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~~~~~-~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
|++++++|++|++|+...+. +++.|+++++..+..+.. ..++..+.++++|+++++|+++..++++......
T Consensus 215 d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~------~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~- 287 (534)
T COG0318 215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDP------EEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD- 287 (534)
T ss_pred ceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCH------HHHHHHHHHhcceEEecchHHHHHHHhCCccCcc-
Confidence 99999999999999998555 489999998854322211 1122227888899999999999998764221100
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCC-cEEEEEecCCCCCHHHHHHHHHhhC-Ccee
Q 004961 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG-RIRFMICGGAPLSADSQRFINICMG-APIG 474 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lr~v~~gG~~l~~~~~~~~~~~~g-~~l~ 474 (721)
..+ ++|.+++||+++++++.+.+++.++ ..++
T Consensus 288 ----------------------------------------------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~ 321 (534)
T COG0318 288 ----------------------------------------------DLSSSLRLVLSGGAPLPPELLERFEERFGPIAIL 321 (534)
T ss_pred ----------------------------------------------ccccceEEEEecCCcCCHHHHHHHHHHhCCCceE
Confidence 002 3999999999999999999999887 4799
Q ss_pred cccccchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccc
Q 004961 475 QAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f 552 (721)
++||+||++..++.....+ ...+++|+|+|+++++|+|++++.. . +|++|||+|+||+++.|||++|+.|++.|
T Consensus 322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~---~-pg~vGei~irgp~v~~GY~~~pe~t~~~f 397 (534)
T COG0318 322 EGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEV---L-PGEVGEIWVRGPNVMKGYWNRPEATAEAF 397 (534)
T ss_pred EeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCcc---C-CCCceEEEEECchhhhhhcCChHHHHHhh
Confidence 9999999998777776665 3568889999999999999544422 2 37899999999999999999999999988
Q ss_pred ccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEc
Q 004961 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVP 629 (721)
Q Consensus 553 ~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~ 629 (721)
. .+ |||+|||+|++|+||+++|+||.||+|+. +|+||+|.|||+++.+||.|.+|+|+|.+|+. .++|+|++
T Consensus 398 ~--~~--gW~~TGDlg~~d~~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~ 472 (534)
T COG0318 398 D--ED--GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVL 472 (534)
T ss_pred c--cC--CeeeecceEEEcCCccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEE
Confidence 5 34 89999999999999999999999999995 79999999999999999999999999999873 59999999
Q ss_pred ChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
+++.. . ....++|.++++ .+++.|++|+.|++++++ | +|++||++|++|+
T Consensus 473 ~~~~~--------~---------------~~~~~~i~~~~~-~~l~~~~~P~~v~~v~~l--P----~t~sGKi~r~~lr 522 (534)
T COG0318 473 KPGGD--------A---------------ELTAEELRAFLR-KRLALYKVPRIVVFVDEL--P----RTASGKIDRRALR 522 (534)
T ss_pred cCCCC--------C---------------CCCHHHHHHHHH-hhhhcccCCeEEEEeCCC--C----CCCchhhhHHHHH
Confidence 86420 0 001378889998 899999999999999998 6 9999999999999
Q ss_pred HHHHH
Q 004961 710 AKFKD 714 (721)
Q Consensus 710 ~~~~~ 714 (721)
+++.+
T Consensus 523 ~~~~~ 527 (534)
T COG0318 523 EEYRA 527 (534)
T ss_pred HHHHh
Confidence 99987
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=632.40 Aligned_cols=498 Identities=21% Similarity=0.280 Sum_probs=404.8
Q ss_pred HHHHHHHh-CCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCC
Q 004961 87 LFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAET 164 (721)
Q Consensus 87 ~~~~~a~~-~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n 164 (721)
.++++... .+|+.|+++.. . .+..+.+||+||.++++++|+.|++ .|+ +||||+|++|+
T Consensus 14 ~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~ 74 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPN 74 (528)
T ss_pred hhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCC
Confidence 56666653 47899999853 1 1112689999999999999999987 578 99999999999
Q ss_pred cHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhh--ccCCC-ceEEEEecCCCCCccC
Q 004961 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLKT-IKNVIYFENDGSEKDS 241 (721)
Q Consensus 165 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~-~~~ii~~~~~~~~~~~ 241 (721)
.+|.++++|||+++|++++|+.+.++++++.+.+++++++++|+++.......... ..... +..++.....
T Consensus 75 ~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------ 148 (528)
T COG0365 75 SPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------ 148 (528)
T ss_pred CHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------
Confidence 99999999999999999999999999999999999999999999987654332211 10000 0002322211
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
+ .+|+++....... .+....+.+|+++|+|||||||+||||+++|+.++............+.++|+++
T Consensus 149 -------~---~~~~~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w 217 (528)
T COG0365 149 -------G---LWYDEAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFW 217 (528)
T ss_pred -------c---ccHHHHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEE
Confidence 1 5677766543322 2234478999999999999999999999999988777766655322778999999
Q ss_pred eccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 322 AYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 322 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
+..++.|++|.+. ++.+|.+|+++++++..... . +.+++..++++++|++++.|+.++.|.+...
T Consensus 218 ~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~-~----~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------- 283 (528)
T COG0365 218 NSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-S----PERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------- 283 (528)
T ss_pred eCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC-C----HHHHHHHHHHhCCceEeeCHHHHHHHHhcCC---------
Confidence 9999999999987 78899999999884333222 1 2334444999999999999999999976321
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~T 480 (721)
.++.++++||.+.+.||||+++..+++.+.+|++|.+.||+|
T Consensus 284 --------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqT 325 (528)
T COG0365 284 --------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQT 325 (528)
T ss_pred --------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEecccccc
Confidence 122344799999999999999999999999999999999999
Q ss_pred hhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc--cccccccCCCcccccccccCCCC
Q 004961 481 ETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTSEVYKVDERG 558 (721)
Q Consensus 481 E~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~t~~~f~~~~~g 558 (721)
|++.+.....+ ..+.++.|+|+||+++.|+| |+|+.+ ++++ |+|+|+.+ +++++||+||+.+.++|. +
T Consensus 326 Etg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~~---~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~---~- 395 (528)
T COG0365 326 ETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNPV---PPGV-GELVVRLPWPGMALTYWNDPERYKEAYF---G- 395 (528)
T ss_pred ccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCcC---CCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh---h-
Confidence 99965555544 45566669999999999999 457654 4777 99999987 899999999999999984 4
Q ss_pred cceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHH
Q 004961 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALE 635 (721)
Q Consensus 559 ~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~ 635 (721)
+||.|||.+++|+||+++|+||.||+||++ |+||.|.|||++|.+||.|.||+|+|.+|+. .++|||+++++..
T Consensus 396 -~~y~tGD~~~~DedGy~~i~GR~DDvI~vs-G~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~- 472 (528)
T COG0365 396 -RWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVE- 472 (528)
T ss_pred -ceeecCceeEEccCCCEEEEeeccceEecc-CeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCC-
Confidence 499999999999999999999999999985 9999999999999999999999999998863 4999999987641
Q ss_pred HHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
+. ++.++|+++++ +.+.++..|+.|++++++ | +|.+|||.|+.||+.+.+
T Consensus 473 -------------------~~---~L~~ei~~~vr-~~~~~~~~p~~i~fv~~L--P----kT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 473 -------------------PN---ELAEEIRRHVA-RNIGPHAIPRKIRFVDEL--P----KTASGKIQRRLLRKILHK 522 (528)
T ss_pred -------------------hH---HHHHHHHHHHH-hccCcccCCceEEEecCC--C----CCCcccHHHHHHHHHHhh
Confidence 11 55688999997 556569999999999999 6 999999999999998763
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-74 Score=657.94 Aligned_cols=542 Identities=21% Similarity=0.299 Sum_probs=428.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++|+++|+++.+ . .+.++++||+||.++++++|++|.+.|+++||+|+|
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~-----------~-------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai 99 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERG-----------A-------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMI 99 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeecc-----------C-------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4789999999999999999998631 1 123468999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCC-----HHHHHHHHHhcCceEEEECccc--hhHHHhhhccCCCceEEEEec
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG-----EDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~ 233 (721)
+++|+++|++++|||+++|+++||+++.++ .+++.+++++++++++|+++.. ...+..... ... .++..+
T Consensus 100 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~ 176 (614)
T PRK08180 100 LSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVR 176 (614)
T ss_pred ecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEec
Confidence 999999999999999999999999999998 7999999999999999998642 222222111 112 233322
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCC--CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (721)
.... .....+++++........ .......++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 177 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 245 (614)
T PRK08180 177 GAVP-----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF 245 (614)
T ss_pred CCCC-----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc
Confidence 1110 011245666554321111 111234679999999999999999999999999999888877766
Q ss_pred CCCC--CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 312 PNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 312 ~~~~--~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
.+. .++++++++|++|.+++.. ++.+++.|+++++.+....... ...++..++++++|+++++|++++.|.+
T Consensus 246 -~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~----~~~~l~~i~~~~~t~~~~vP~~~~~l~~ 320 (614)
T PRK08180 246 -PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGG----FDETLRNLREISPTVYFNVPKGWEMLVP 320 (614)
T ss_pred -cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchh----HHHHHHHHHHhCCcEEechHHHHHHHHH
Confidence 543 5689999999999999765 6678999999988432110000 0112333889999999999999999876
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
...... ..+..++++||.+++||+++++++.+++.+.
T Consensus 321 ~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~ 357 (614)
T PRK08180 321 ALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRV 357 (614)
T ss_pred HHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHH
Confidence 432100 1112234689999999999999999888764
Q ss_pred ----hC--CceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccccccc
Q 004961 469 ----MG--APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (721)
Q Consensus 469 ----~g--~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (721)
+| +++++.||+||++.+++.........+++|+|+||++++|+|. +..|||+|+|++++.|||
T Consensus 358 ~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~-----------~~~GEi~vrg~~v~~GY~ 426 (614)
T PRK08180 358 AEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV-----------GGKLEVRVKGPNVTPGYW 426 (614)
T ss_pred HHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC-----------CCCcEEEEecCccchhhc
Confidence 33 6899999999998776655444456789999999999999972 246999999999999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEE----ccCCeEEEEecCCCeEEcCCeeeec--chHHHHHHhcCcccceEEEEe
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQV----YPDGCLEIIDRKKDIVKLQHGEYIS--LGKVEAALISSDYVDNIMIHA 616 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~----d~dG~l~i~GR~~d~ik~~~G~~v~--~~eIE~~l~~~p~V~~~~V~g 616 (721)
++|+.|++.|. .| |||+|||+|++ |+||+|+|+||+||+||+++|++|+ |.|||.++.+||.|++|+|+|
T Consensus 427 ~~p~~t~~~~~--~d--gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g 502 (614)
T PRK08180 427 RAPELTAEAFD--EE--GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITG 502 (614)
T ss_pred CChhHhHhhcc--cC--CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEc
Confidence 99999999985 56 99999999999 4689999999999999988899777 778899999999999999999
Q ss_pred cCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCc
Q 004961 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGL 696 (721)
Q Consensus 617 ~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~ 696 (721)
.++ ..++|+|+++++....|+... ...+..+.++.+++.+.+++.|.++.+ ...+.+++|+++++++++|+..+|.
T Consensus 503 ~~~-~~~~a~V~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk 578 (614)
T PRK08180 503 HDR-DEIGLLVFPNLDACRRLAGLL--ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGE 578 (614)
T ss_pred CCC-CceEEEEEcCHHHHHHHHhhc--ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCc
Confidence 985 467899999988766666543 122344556678888888888888876 5556677999999999998888899
Q ss_pred cCcccccChHHHHHHHHHHHHhhhC
Q 004961 697 VTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 697 ~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
+|++||++|+++.+.|+++|++||+
T Consensus 579 ~t~~~~~~R~~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 579 ITDKGYINQRAVLARRAALVEALYA 603 (614)
T ss_pred cCccccccHHHHHHHhHHHHHHHhC
Confidence 9999999999999999999999995
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-73 Score=652.19 Aligned_cols=544 Identities=22% Similarity=0.312 Sum_probs=427.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|+++++++||++|+++. ++. .+.++.+||+||.++++++|++|.+.|+++||+|
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~-----------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 108 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR-----------EPG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV 108 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc-----------cCC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 45679999999999999999999863 110 1335689999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCH-----HHHHHHHHhcCceEEEECccc-hhHHHhhhccCCCceEEEEe
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGE-----DALIHSLNETQVTTLICDSKQ-LKKLSAVSSSLKTIKNVIYF 232 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~ii~~ 232 (721)
+++++|+++|+++++||+++|++++|++|.++. +++.+++++++++++|+++.. .......... ..++ ++.+
T Consensus 109 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~i~~ 186 (624)
T PRK12582 109 MILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT-VVHV 186 (624)
T ss_pred EEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce-EEEE
Confidence 999999999999999999999999999999885 899999999999999998642 1211111111 1222 3333
Q ss_pred cCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCC--CCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh
Q 004961 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (721)
+.... .....+++++......... ......++|+++|+|||||||.||||++||+++++.+......
T Consensus 187 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~ 255 (624)
T PRK12582 187 TGPGE-----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQL 255 (624)
T ss_pred cCCCc-----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHh
Confidence 32110 1122455665543221111 1123467899999999999999999999999999887776555
Q ss_pred CCCCCC---CcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHH
Q 004961 311 IPNPGR---SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (721)
Q Consensus 311 ~~~~~~---~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 386 (721)
. .... .+++++++|++|++++.. ++.++..|+++++.+....... ...+...++++++|+++++|++++.|
T Consensus 256 ~-~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~~t~~~~vP~~~~~l 330 (624)
T PRK12582 256 R-PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGM----FEETIRNLREISPTVYGNVPAGYAML 330 (624)
T ss_pred c-cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccch----HHHHHHHHHhcCCeEEeccCHHHHHH
Confidence 4 4433 589999999999999866 5567899999988432111110 01122337889999999999999988
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHH
Q 004961 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~ 466 (721)
.+...... ..+..++++||.+++||+++++++.+++.
T Consensus 331 ~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~ 367 (624)
T PRK12582 331 AEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQ 367 (624)
T ss_pred HHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHH
Confidence 75422100 01111235899999999999999999888
Q ss_pred Hhh------CCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccccc
Q 004961 467 ICM------GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (721)
Q Consensus 467 ~~~------g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g 540 (721)
+.+ +++++++||+||++.+++.......+.+++|+|+||++++|++ .|+.|||+|+|++++.|
T Consensus 368 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~G 436 (624)
T PRK12582 368 ALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPG 436 (624)
T ss_pred HHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCccccc
Confidence 753 3689999999999876654344445568999999999999974 45789999999999999
Q ss_pred ccCCCcccccccccCCCCcceEeeCcEEEE-c---cCCeEEEEecCCCeEEcCCeeeecchHHH--HHHhcCcccceEEE
Q 004961 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQV-Y---PDGCLEIIDRKKDIVKLQHGEYISLGKVE--AALISSDYVDNIMI 614 (721)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~-d---~dG~l~i~GR~~d~ik~~~G~~v~~~eIE--~~l~~~p~V~~~~V 614 (721)
||++|+.|++.|. .| |||+|||+|++ | ++|+|+|+||+||+||+++|++|+|.+|| .++.+||.|.+|+|
T Consensus 437 Y~~~p~~t~~~f~--~d--gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~V 512 (624)
T PRK12582 437 YHKDPELTAAAFD--EE--GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVV 512 (624)
T ss_pred ccCCccchhhhcC--cc--CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEE
Confidence 9999999999996 56 99999999998 4 46999999999999999899999998885 68899999999999
Q ss_pred EecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCc-cccEEEeeCCCCCCC
Q 004961 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFE-IPAKIKLMPEPWTPE 693 (721)
Q Consensus 615 ~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-~P~~i~~~~~~~~p~ 693 (721)
+|++ +.++.++|+|+......++...+. +..+.++++++.+.+++.|.++.+ .++.+. +|+++++++++|+.+
T Consensus 513 vG~~-~~~~g~lv~p~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 586 (624)
T PRK12582 513 AGQD-RAFIGLLAWPNPAACRQLAGDPDA---APEDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMTEPPSID 586 (624)
T ss_pred EcCC-CCcEEEEEecCHHHHHHHHhcCCC---CHHHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeCCCCCcc
Confidence 9986 567889999998876666554332 244567788899999999888874 789998 999999999998888
Q ss_pred CCccCcccccChHHHHHHHHHHHHhhhC
Q 004961 694 AGLVTAALKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 694 ~~~~t~~gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
+|.+|++||++|+++.++|+++|++||+
T Consensus 587 ~g~~t~~~~~~R~~~~~~y~~~i~~ly~ 614 (624)
T PRK12582 587 AGEITDKGYINQRAVLERRAALVERLYA 614 (624)
T ss_pred CCcCCccccccHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999996
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-72 Score=659.94 Aligned_cols=565 Identities=20% Similarity=0.313 Sum_probs=459.1
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCC
Q 004961 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (721)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd 156 (721)
+++...|+.++|++.++++|+++|+..+. + .++++++||+|+.++++++|++|.++|+++||
T Consensus 422 ~~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GD 483 (1452)
T PTZ00297 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRPGD 483 (1452)
T ss_pred CcccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34566799999999999999999996431 0 13456899999999999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCC
Q 004961 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (721)
Q Consensus 157 ~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 236 (721)
+|+|+++|++||+++++||+++|+++||+++ +.+++.+++++++++++|++.+..+.+.++.. +.+++||+++...
T Consensus 484 rVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~ 559 (1452)
T PTZ00297 484 VIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFY 559 (1452)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCc
Confidence 9999999999999999999999999999985 46799999999999999999887777665433 3789999986421
Q ss_pred CCccCCccCCCCCceEeeHHHHHhcCCCCCCC-CCCCCCCCeEEEEe---ecCCCCCcceeeeccHHHHHHHHHHHhhC-
Q 004961 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMY---TSGSTGLPKGVMITHGNIVATAAAIKTLI- 311 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~---TSGTTG~PKgV~~sh~~l~~~~~~~~~~~- 311 (721)
...... .....++.+.+|+++...+.....+ ....+++|++.|+| ||||||.||||++||+|+++.+.......
T Consensus 560 ~~~~~~-~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~ 638 (1452)
T PTZ00297 560 DEDDHA-VARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV 638 (1452)
T ss_pred cccccc-ccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc
Confidence 100000 0001134577899998876432221 23347889999996 99999999999999999999998875532
Q ss_pred -CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 312 -PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 -~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
+...++|++++++|++|+++....+.+++.|++++++++..+.+. +++++||++++||++|+++.+.+
T Consensus 639 ~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~i 707 (1452)
T PTZ00297 639 LPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQL 707 (1452)
T ss_pred ccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHHH
Confidence 245678999999999999998777788999999988877777776 99999999999999999999998
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCC--CCCHHHHHHHHHh
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA--PLSADSQRFINIC 468 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~--~l~~~~~~~~~~~ 468 (721)
..+....+.+++++|+++++.+...++. .....++++.++|+++|+.+|+++|.+++||+ +++..+..
T Consensus 708 ~~~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~----- 777 (1452)
T PTZ00297 708 SRANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE----- 777 (1452)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-----
Confidence 8888888889999999999987765441 12345689999999999999999999999984 56544433
Q ss_pred hCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
++++..+||+||+. +...+.+.. ..|+|+|++++||.+.++.+. .+.+|||+++ |++||++|
T Consensus 778 -~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~-----~~~~GEIlvr-------~~kdpe~T 839 (1452)
T PTZ00297 778 -HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSD-----GAGIGQLVLA-------KKGEPRRT 839 (1452)
T ss_pred -CceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccC-----CCCCCeEEEE-------ECCChHHH
Confidence 57788999999953 334443333 349999999999998544332 1247999995 45899999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCceEEEEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVV 628 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~~~~A~vv 628 (721)
++.+ + ||+ +||+|+|+||+||+||+++|++|+|+.||+.+.++|.|.+++|+|++. +.++|+|+
T Consensus 840 ~e~~----~--gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVv 903 (1452)
T PTZ00297 840 LPIA----A--QWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVS 903 (1452)
T ss_pred HHhh----C--cCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEE
Confidence 9853 4 785 599999999999999999999999999999999999999999999874 45999999
Q ss_pred cChHHHH-HHHHHhCCCcc-------cHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 629 PSHKALE-KWAHEASIKYE-------DLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 629 ~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
|+.+.+. +|+.+.++... +..+++++ ..+.+.+++++..+..++..+++++.+.+++++|++++|++|++
T Consensus 904 pd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPT 981 (1452)
T PTZ00297 904 PNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPY 981 (1452)
T ss_pred eCHHHHHHHHHHHcCCCccccccccCCHHHHHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChh
Confidence 9999999 99998887531 35555542 22345555555555567899999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHhhhC
Q 004961 701 LKIKREQLKAKFKDDLQMLYQ 721 (721)
Q Consensus 701 gKi~R~~l~~~~~~~i~~~Y~ 721 (721)
+|++|+.+.++|+++|++||+
T Consensus 982 lKlKR~~I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297 982 GKIRRDAVHSYFSSVIERFYS 1002 (1452)
T ss_pred hhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=636.87 Aligned_cols=525 Identities=22% Similarity=0.270 Sum_probs=407.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++|+++|++. +++ .+||+||.++++++|++|.+.|+++||+|+|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v 62 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAI 62 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999974 232 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhh-ccCCCceEEEEecCCCCCc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~ 239 (721)
+++|+++|+++++||+++|++++||++.++.+++.+++++++++++++++........+. ..++.++.++..+......
T Consensus 63 ~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 142 (563)
T PLN02860 63 AALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142 (563)
T ss_pred EcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc
Confidence 999999999999999999999999999999999999999999999999876543333321 3345555555544321100
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
..........+++...............++++++|+|||||||.||||++||++++.........+ ++.++|+
T Consensus 143 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~ 215 (563)
T PLN02860 143 ------FIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDV 215 (563)
T ss_pred ------ccchhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCE
Confidence 000001112222211110111111234678999999999999999999999999998877766666 8899999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+++.+|++|++++...+.++..|+++++.+... +..++..++++++|+++++|+++..+.+.......
T Consensus 216 ~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~---- 283 (563)
T PLN02860 216 YLHTAPLCHIGGLSSALAMLMVGACHVLLPKFD--------AKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT---- 283 (563)
T ss_pred EEEecCchhhccHHHHHHHHHcCceEEecCCCC--------HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc----
Confidence 999999999999988888899999998843211 11223339999999999999999998764211000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG 478 (721)
....+++|.+++||+++++++.+.+++.+ ++++++.||
T Consensus 284 -----------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG 322 (563)
T PLN02860 284 -----------------------------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYG 322 (563)
T ss_pred -----------------------------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCC
Confidence 01125899999999999999999998887 789999999
Q ss_pred cchhcccccccCCCC-----------------------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc
Q 004961 479 LTETCAGSTFSEWDD-----------------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF 535 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~ 535 (721)
+||++..++.....+ ....++|+|+|+++++|++.+ +|+.|||+|+|+
T Consensus 323 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~---------~g~~Gel~v~g~ 393 (563)
T PLN02860 323 MTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE---------SSRVGRILTRGP 393 (563)
T ss_pred ccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC---------CCceeEEEEecC
Confidence 999986554332211 112478999999999999832 468899999999
Q ss_pred cccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEE
Q 004961 536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615 (721)
Q Consensus 536 ~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~ 615 (721)
+++.|||++|+.|++.|. .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||+++.+||+|.+|+|+
T Consensus 394 ~~~~GY~~~~~~t~~~~~--~~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~ 468 (563)
T PLN02860 394 HVMLGYWGQNSETASVLS--ND--GWLDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVV 468 (563)
T ss_pred cccccccCCccccchhcc--CC--CeEEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEE
Confidence 999999999999999886 56 89999999999999999999999999997 69999999999999999999999999
Q ss_pred ecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEee-CCCCC
Q 004961 616 ADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLM-PEPWT 691 (721)
Q Consensus 616 g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~-~~~~~ 691 (721)
+.+++ +.++|+|++.++.. |.. .. ........ ....++|++++++.+|++|++|+.++++ +++
T Consensus 469 ~~~~~~~~~~~~a~v~~~~~~~--~~~----~~--~~~~~~~~---~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~l-- 535 (563)
T PLN02860 469 GVPDSRLTEMVVACVRLRDGWI--WSD----NE--KENAKKNL---TLSSETLRHHCREKNLSRFKIPKLFVQWRKPF-- 535 (563)
T ss_pred EEecCcCCceEEEEEEECCccc--ccc----cc--chhhcccc---cccHHHHHHHHhhCcccccccceEEEEEecCC--
Confidence 98865 46999999876420 000 00 00000000 1113678888883469999999999876 445
Q ss_pred CCCCccCcccccChHHHHHHHHHHHHhh
Q 004961 692 PEAGLVTAALKIKREQLKAKFKDDLQML 719 (721)
Q Consensus 692 p~~~~~t~~gKi~R~~l~~~~~~~i~~~ 719 (721)
| +|++|||+|++|++++.++++.+
T Consensus 536 P----~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 536 P----LTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred C----CCcccchhHHHHHHHHHHHHhcc
Confidence 6 99999999999999998888754
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=644.86 Aligned_cols=538 Identities=16% Similarity=0.172 Sum_probs=406.7
Q ss_pred CCCHHHHHHHHHHh--CCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 81 ASTMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 81 ~~tl~~~~~~~a~~--~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
.++..++++++++. +|+++|+++.. ++. +..+++||+||.++++++|++|+++|+++||+|
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~----------~~~-------~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV 120 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYEC----------PYL-------KKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNV 120 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEEc----------CCC-------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 46778899888765 79999998742 111 123579999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc---------chhHHHhhhccCC-CceE
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK---------QLKKLSAVSSSLK-TIKN 228 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~ 228 (721)
+|+++|++|+++++|||+++|++++|+++.++++++.++|++++++++|+++. ..+.+.+...... ...+
T Consensus 121 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (647)
T PTZ00237 121 LIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSN 200 (647)
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCE
Confidence 99999999999999999999999999999999999999999999999999762 2223333322111 2335
Q ss_pred EEEecCCCC---CccCCccCCCCCceEeeHHHHHhcCC----CCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHH-H
Q 004961 229 VIYFENDGS---EKDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN-I 300 (721)
Q Consensus 229 ii~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~-l 300 (721)
++.+..... .....+...........|+++..... ..........++|+++|+|||||||.||||+++|++ +
T Consensus 201 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l 280 (647)
T PTZ00237 201 VITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL 280 (647)
T ss_pred EEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHH
Confidence 554422110 00000000000012245666654221 111122345789999999999999999999999999 4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeech
Q 004961 301 VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (721)
Q Consensus 301 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 380 (721)
.+........+ ....+|++++..|++|+.+...++.+|+.|+++++.+...+.... .+..++..++++++|+++++|
T Consensus 281 ~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~--~~~~~~~~i~~~~vt~~~~~P 357 (647)
T PTZ00237 281 VGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKH--IEDDLWNTIEKHKVTHTLTLP 357 (647)
T ss_pred HHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCC--chHHHHHHHHHhCeEEEEeCH
Confidence 44333334444 677889999999999987666678889999999884421111000 012344459999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHH
Q 004961 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (721)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~ 460 (721)
++++.|.+....... .......++||.+++||++++++
T Consensus 358 ~~~~~l~~~~~~~~~------------------------------------------~~~~~~l~~Lr~i~~~G~~l~~~ 395 (647)
T PTZ00237 358 KTIRYLIKTDPEATI------------------------------------------IRSKYDLSNLKEIWCGGEVIEES 395 (647)
T ss_pred HHHHHHHhhCccccc------------------------------------------cccccCcchheEEEecCccCCHH
Confidence 999998763110000 00011235899999999999999
Q ss_pred HHHHHHHhhCCceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc---c
Q 004961 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---N 536 (721)
Q Consensus 461 ~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~ 536 (721)
+.+++++.+|+++++.||+||+++.++..... ....+++|+|+|+++++|+| ++|..+ ++|+.|||+++|| +
T Consensus 396 ~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~---~~ge~GEl~v~~p~~p~ 471 (647)
T PTZ00237 396 IPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKEL---NVNEIGEVAFKLPMPPS 471 (647)
T ss_pred HHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCC---CCCCceEEEEeccCCch
Confidence 99999998999999999999998665433222 22348999999999999999 566654 4789999999986 7
Q ss_pred ccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEe
Q 004961 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616 (721)
Q Consensus 537 v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g 616 (721)
++.|||++++.|.+.|.. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|
T Consensus 472 ~~~gy~~~~~~~~~~f~~-~~--g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg 547 (647)
T PTZ00237 472 FATTFYKNDEKFKQLFSK-FP--GYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIG 547 (647)
T ss_pred hhCceeCCHHHHHHHHhC-CC--CEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEe
Confidence 899999999999987731 14 89999999999999999999999999997 599999999999999999999999999
Q ss_pred cCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCC
Q 004961 617 DPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPE 693 (721)
Q Consensus 617 ~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~ 693 (721)
.+++ +.++|+|+++++.. +... ..+++.++|+++++ ++|++|++|+.|++++++ |
T Consensus 548 ~~~~~~g~~~~a~Vv~~~~~~-------~~~~-----------~~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~l--P- 605 (647)
T PTZ00237 548 IYDPDCYNVPIGLLVLKQDQS-------NQSI-----------DLNKLKNEINNIIT-QDIESLAVLRKIIIVNQL--P- 605 (647)
T ss_pred eEcCCCCCEEEEEEEeccCcc-------ccCC-----------CHHHHHHHHHHHHH-hhcCccccCcEEEEcCCC--C-
Confidence 9875 46899999874310 0000 01345678889998 899999999999999998 6
Q ss_pred CCccCcccccChHHHHHHHH
Q 004961 694 AGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 694 ~~~~t~~gKi~R~~l~~~~~ 713 (721)
+|++|||+|+.|++++.
T Consensus 606 ---~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 606 ---KTKTGKIPRQIISKFLN 622 (647)
T ss_pred ---CCCCccEeHHHHHHHHc
Confidence 99999999999999874
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=635.95 Aligned_cols=531 Identities=22% Similarity=0.275 Sum_probs=420.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+.|++++|+++++++|+++|+++... ++. ....+++||+||.++++++|+.|+++|+++||+|++
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i 88 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAF 88 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986421 111 122357999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc-----hhHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|++++++++|||+++| +++|+++.++++++.+++++++++++|++... .+.+.......+.++.++.++..
T Consensus 89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (632)
T PRK07529 89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA 167 (632)
T ss_pred ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence 9999999999999999999 57999999999999999999999999997643 34555555667778888776543
Q ss_pred CCCcc-CCcc----CCCCCceEeeHHHHHhcCCCCCC-CCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh
Q 004961 236 GSEKD-SGVS----GGISNWTVSSFSEVEKLGKRSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (721)
Q Consensus 236 ~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (721)
..... .... ....+..+..+++.......... ......++++++|+|||||||.||||++||+++++.......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~ 247 (632)
T PRK07529 168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL 247 (632)
T ss_pred ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence 21000 0000 00012234556665544322211 123346799999999999999999999999999998887777
Q ss_pred hCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
.+ .+.++|++++.+|++|.++... .+.++..|+++++.++..+.+.. ....++..++++++|++.++|+++..+.+
T Consensus 248 ~~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 324 (632)
T PRK07529 248 LL-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGVPTVYAALLQ 324 (632)
T ss_pred hc-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch--HHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 77 7889999999999999999865 67889999999997654433221 01234455999999999999999998875
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
.... ....++||.+++||+++++++.+.+++.
T Consensus 325 ~~~~------------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~ 356 (632)
T PRK07529 325 VPVD------------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAA 356 (632)
T ss_pred Cccc------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 2110 0112589999999999999999999999
Q ss_pred hCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecC-CCCcccCCCCCCcceEEEccccccccccCCCc
Q 004961 469 MGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWD-EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~-~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
+|++++++||+||++.+++...... ...+++|+|+|+++++|+..+ ++.+...+++|+.|||+|+||+++.||++++
T Consensus 357 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~- 435 (632)
T PRK07529 357 TGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA- 435 (632)
T ss_pred hCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-
Confidence 9999999999999987766554432 356899999999999997533 3433334678999999999999999999865
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~ 623 (721)
.+.+.|. .+ |||+|||+|++|+||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.+
T Consensus 436 ~~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~ 510 (632)
T PRK07529 436 HNKGLWL--ED--GWLNTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELP 510 (632)
T ss_pred ccccccc--CC--CceEcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCcee
Confidence 4556664 45 89999999999999999999999999996 7999999999999999999999999998865 358
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCC-CCccccEEEeeCCCCCCCCCccCcccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLD-KFEIPAKIKLMPEPWTPEAGLVTAALK 702 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~-~~~~P~~i~~~~~~~~p~~~~~t~~gK 702 (721)
+|+|++.++. ..+ .++|+++++ .+|+ .+++|+.|++++++ | +|++||
T Consensus 511 ~a~v~l~~~~----------~~~---------------~~~l~~~~~-~~l~~~~~~P~~i~~v~~l--P----~t~~GK 558 (632)
T PRK07529 511 VAYVQLKPGA----------SAT---------------EAELLAFAR-DHIAERAAVPKHVRILDAL--P----KTAVGK 558 (632)
T ss_pred EEEEEEcCCC----------CCC---------------HHHHHHHHH-HhcchhccCCcEEEEecCC--C----CCCCCc
Confidence 9999887542 000 257888888 7776 58999999999998 6 999999
Q ss_pred cChHHHHHHHHHHH
Q 004961 703 IKREQLKAKFKDDL 716 (721)
Q Consensus 703 i~R~~l~~~~~~~i 716 (721)
++|++|++.+....
T Consensus 559 i~r~~Lr~~~~~~~ 572 (632)
T PRK07529 559 IFKPALRRDAIRRV 572 (632)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999998876543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=638.37 Aligned_cols=527 Identities=18% Similarity=0.187 Sum_probs=405.3
Q ss_pred CCHHHHHHHHHH-hCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 82 STMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~-~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+..+++|+++++ .+|+++|+++.. ++ .+..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i 150 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWEG----------NE-------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVI 150 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEEc----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 345778888876 489999998731 11 123357999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchh---------HHHhhhccC----CCce
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK---------KLSAVSSSL----KTIK 227 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~----~~~~ 227 (721)
+++|++|+++++|||+++|++++|+++.++++++.++|++++++++|+++.... .+....... ..+.
T Consensus 151 ~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
T PLN02654 151 YLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVG 230 (666)
T ss_pred EcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCcc
Confidence 999999999999999999999999999999999999999999999999876431 122211111 1112
Q ss_pred EEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHH-HHH
Q 004961 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAA 306 (721)
Q Consensus 228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~ 306 (721)
.++..+......... ..+. ......|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. ...
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~ 307 (666)
T PLN02654 231 ICLTYENQLAMKRED-TKWQ-EGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATT 307 (666)
T ss_pred EEEEecccccccccc-cccc-cCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHH
Confidence 222222211000000 0000 011233555543211 111223356899999999999999999999999998654 344
Q ss_pred HHhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHH
Q 004961 307 IKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (721)
Q Consensus 307 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 385 (721)
....+ ++.++|++++++|++|+++... ++.+|+.|+++++.+....... +..++..|+++++|+++++|++++.
T Consensus 308 ~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~ 382 (666)
T PLN02654 308 FKYAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPD----SGRCWDIVDKYKVTIFYTAPTLVRS 382 (666)
T ss_pred HHHhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHH
Confidence 55556 8999999999999999998755 6778999999998543211111 2234445999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHH
Q 004961 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (721)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~ 465 (721)
|.+...... .....++||.++++|+++++++.+++
T Consensus 383 l~~~~~~~~---------------------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~ 417 (666)
T PLN02654 383 LMRDGDEYV---------------------------------------------TRHSRKSLRVLGSVGEPINPSAWRWF 417 (666)
T ss_pred HHhhCcccc---------------------------------------------ccCChhheeEEEEecCCCCHHHHHHH
Confidence 876321000 01112589999999999999999999
Q ss_pred HHhhC---CceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--cccc
Q 004961 466 NICMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVT 538 (721)
Q Consensus 466 ~~~~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~ 538 (721)
.+.+| +++.+.||+||+++..+...+. ..+++++|+|+||++++|+| ++|..+ +.++.|||+|++ |+++
T Consensus 418 ~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~---~~~~~Gel~v~~~~p~~~ 493 (666)
T PLN02654 418 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI---EGECSGYLCVKKSWPGAF 493 (666)
T ss_pred HHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC---CCCCceEEEEcCCCchhh
Confidence 88887 6899999999998765544332 23568999999999999999 666654 366789999999 7899
Q ss_pred ccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecC
Q 004961 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618 (721)
Q Consensus 539 ~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~ 618 (721)
.|||+|++.+.+.|....+ |||+|||+|++|+||+++|+||.||+||+ +|+||+|.|||++|.+||+|.+++|+|.+
T Consensus 494 ~gy~~~~~~~~~~~~~~~~--g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~ 570 (666)
T PLN02654 494 RTLYGDHERYETTYFKPFA--GYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIE 570 (666)
T ss_pred hhhcCChHHHHHhhhhcCC--CEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999998887642124 89999999999999999999999999997 59999999999999999999999999998
Q ss_pred CCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCC
Q 004961 619 FHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAG 695 (721)
Q Consensus 619 ~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~ 695 (721)
++. .++|+|++.++. .. .+++.++|+++++ .+|++|++|+.|++++++ |
T Consensus 571 d~~~ge~~~a~Vvl~~~~----------~~------------~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l--P--- 622 (666)
T PLN02654 571 HEVKGQGIYAFVTLVEGV----------PY------------SEELRKSLILTVR-NQIGAFAAPDKIHWAPGL--P--- 622 (666)
T ss_pred cCCCCeEEEEEEEECCCC----------CC------------CHHHHHHHHHHHH-HhCCCCcCCCEEEECCCC--C---
Confidence 763 689999987642 10 1234578888888 899999999999999988 6
Q ss_pred ccCcccccChHHHHHHHHH
Q 004961 696 LVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 696 ~~t~~gKi~R~~l~~~~~~ 714 (721)
+|.+||++|++|++.+.+
T Consensus 623 -~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 623 -KTRSGKIMRRILRKIASR 640 (666)
T ss_pred -CCCCcCchHHHHHHHHcC
Confidence 999999999999998764
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=624.76 Aligned_cols=499 Identities=21% Similarity=0.244 Sum_probs=392.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..++.+.|.+.++++|+++|+... ++ +.+||+||.++++++|+.|.+. +||+|+|
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~~---~gd~Val 72 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSKY---PDQHIGI 72 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhhc---cCCeEEE
Confidence 478999999999999999998642 11 2599999999999999999873 8999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCC-CceEEEEecCCCCCc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-TIKNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~ 239 (721)
+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++.+....+.+...... ....++.++.....
T Consensus 73 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 151 (539)
T PRK06334 73 MMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE- 151 (539)
T ss_pred EcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh-
Confidence 9999999999999999999999999999999999999999999999999877665554332111 11133333221000
Q ss_pred cCCccCCCCCceEeeHHHHHhcCC----C-----CCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGK----R-----SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (721)
..+.+...... . .........++|+++|+|||||||.||||++||+++..........
T Consensus 152 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 218 (539)
T PRK06334 152 -------------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF 218 (539)
T ss_pred -------------ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh
Confidence 00011000000 0 0001123567999999999999999999999999999988877777
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ .++++|++++++|++|.+++.. .+.++..|+++++.... .+ +..++..|+++++|++.++|++++.+.+.
T Consensus 219 ~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 290 (539)
T PRK06334 219 F-SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNP--LY-----PKKIVEMIDEAKVTFLGSTPVFFDYILKT 290 (539)
T ss_pred c-CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCC--CC-----HHHHHHHHHHhCCcEEEecHHHHHHHHHh
Confidence 7 8889999999999999999865 67789999999873211 01 12233339999999999999999998764
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... ....++||.+++||+++++++.+++.+.+
T Consensus 291 ~~~~-----------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 291 AKKQ-----------------------------------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred hhhc-----------------------------------------------ccccccccEEEECCccCCHHHHHHHHHHC
Confidence 2110 00125899999999999999999998887
Q ss_pred -CCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcc
Q 004961 470 -GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (721)
Q Consensus 470 -g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (721)
++.+++.||+||++.+++...... ...+++|+|+|+++++|+|.+++.. +++|+.|||+|+|++++.|||++++.
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~ 400 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVP---VSSGETGLVLTRGTSLFSGYLGEDFG 400 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCcc---CCCCceEEEEEecCcccccccCCccc
Confidence 689999999999987766544332 2346899999999999998555544 45889999999999999999999987
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccce------EEEEecCCCc
Q 004961 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN------IMIHADPFHN 621 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~------~~V~g~~~~~ 621 (721)
+.... .++.|||+|||+|++|++|+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+ ++|++.+++.
T Consensus 401 ~~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~ 476 (539)
T PRK06334 401 QGFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK 476 (539)
T ss_pred cccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc
Confidence 65332 234489999999999999999999999999997 6999999999999999999998 8889988664
Q ss_pred -eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 622 -YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 622 -~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
.++++++.... .+++++++++..++.|++|+.|++++++ | +|++
T Consensus 477 ~~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~~~~~~P~~i~~v~~l--P----~t~~ 521 (539)
T PRK06334 477 VRLCLFTTFPTS-----------------------------ISEVNDILKNSKTSSILKISYHHQVESI--P----MLGT 521 (539)
T ss_pred eEEEEEEeccCC-----------------------------hHHHHHHHHhcCCcccccchheeeeccc--c----cccC
Confidence 35555553211 1567788873358999999999999998 6 9999
Q ss_pred cccChHHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKDD 715 (721)
Q Consensus 701 gKi~R~~l~~~~~~~ 715 (721)
|||+|++|++.....
T Consensus 522 GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 522 GKPDYCSLNALAKSL 536 (539)
T ss_pred CcccHHHHHHHHHHh
Confidence 999999999876553
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-71 Score=635.62 Aligned_cols=524 Identities=19% Similarity=0.219 Sum_probs=414.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+..+++|+++++++|+++|+++.. .. .++.+.+||+||.++++++|++|+++|+++||+|+++
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 119 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWEG-----------DE------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIY 119 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 567888888999999999998742 10 1334689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhccCC-CceEEEE
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK-TIKNVIY 231 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~~~ii~ 231 (721)
++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++... +.+......++ .++.++.
T Consensus 120 ~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (625)
T TIGR02188 120 MPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV 199 (625)
T ss_pred CCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999987532 33444444555 5666776
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH-Hhh
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~-~~~ 310 (721)
++...... ... ......++++..... ....+....++|+++|+|||||||.||||+++|++++...... ...
T Consensus 200 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~ 272 (625)
T TIGR02188 200 VRRTGNPV-----PWV-EGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYV 272 (625)
T ss_pred EcCCCCCc-----Ccc-ccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhc
Confidence 65432110 000 011234666554322 1222345678999999999999999999999999987655443 334
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ ++.++|++++.+|++|..+... ++.+|..|+++++.+....... +..++..++++++|++.++|++++.|.+.
T Consensus 273 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 347 (625)
T TIGR02188 273 F-DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPD----PGRFWEIIEKHKVTIFYTAPTAIRALMRL 347 (625)
T ss_pred c-CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCC----hhHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 5 8889999999999999988654 6788999999988432211111 22344449999999999999999998763
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... .+...+++||.+++||+++++++.+++.+.+
T Consensus 348 ~~~~---------------------------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~ 382 (625)
T TIGR02188 348 GDEW---------------------------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVV 382 (625)
T ss_pred CCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHc
Confidence 2110 0111235899999999999999999998887
Q ss_pred C---CceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--cccccccc
Q 004961 470 G---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYF 542 (721)
Q Consensus 470 g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~ 542 (721)
+ +++++.||+||+++.++..... ..+.+++|+|+||++++|+| ++|+.++ ++|+.|||+|+| |+++.|||
T Consensus 383 ~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~--~~g~~GeL~v~~p~p~~~~gy~ 459 (625)
T TIGR02188 383 GKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE--GPGEGGYLVIKQPWPGMLRTIY 459 (625)
T ss_pred CCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC--CCCCeEEEEEccCCCccccccc
Confidence 5 7899999999998765543322 34568999999999999999 6665432 278899999999 68999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC--
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH-- 620 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~-- 620 (721)
++++.+.+.+....+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 460 ~~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~ 536 (625)
T TIGR02188 460 GDHERFVDTYFSPFP--GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIK 536 (625)
T ss_pred CChHHHHHHHhccCC--CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCC
Confidence 999988887752234 89999999999999999999999999997 5999999999999999999999999998765
Q ss_pred -ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCc
Q 004961 621 -NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 621 -~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 699 (721)
+.++|+|++.++. .. .+.+.++|+++++ .+|++|++|+.|++++++ | +|+
T Consensus 537 g~~~~a~vv~~~~~----------~~------------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l--P----~t~ 587 (625)
T TIGR02188 537 GQAIYAFVTLKDGY----------EP------------DDELRKELRKHVR-KEIGPIAKPDKIRFVPGL--P----KTR 587 (625)
T ss_pred CeEEEEEEEeCCCC----------CC------------CHHHHHHHHHHHH-hhcCCCccCcEEEECCCC--C----CCC
Confidence 4689999987643 00 0224578888998 899999999999999998 6 999
Q ss_pred ccccChHHHHHHHHH
Q 004961 700 ALKIKREQLKAKFKD 714 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~ 714 (721)
+||++|+.|++.+..
T Consensus 588 sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 588 SGKIMRRLLRKIAAG 602 (625)
T ss_pred CccchHHHHHHHHcC
Confidence 999999999988754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=627.16 Aligned_cols=492 Identities=19% Similarity=0.259 Sum_probs=406.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|+++++++||++|++. ++ +.+||+||.++++++|++|.+.|+++||+|+|+
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~ 105 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALID------------ER-----------GTLTYAELDEQSNALARGLLALGVRAGDGVAVL 105 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEE------------CC-----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 4899999999999999999985 22 269999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.......
T Consensus 106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 181 (549)
T PRK07788 106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE---- 181 (549)
T ss_pred cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc----
Confidence 9999999999999999999999999999999999999999999999998877766655444555554443222111
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.....+.+++++....... +....+++.++++|||||||.||||+++|+++++.+......+ .+.++|+++
T Consensus 182 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~ 252 (549)
T PRK07788 182 -----PSGSTDETLDDLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTL 252 (549)
T ss_pred -----cCCcCcccHHHHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEE
Confidence 0112345677766532221 2223457889999999999999999999999999988887777 888999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
..+|++|.+++...+.++..|+++++. ++..+.+. ++++++|++.++|+++..+.+.......
T Consensus 253 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~--- 318 (549)
T PRK07788 253 LPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVLA--- 318 (549)
T ss_pred EccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCcccccC---
Confidence 999999999998778889999999884 33333333 9999999999999999988753211000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....++||.+++||+++++++.+.+.+.++.+++|.||
T Consensus 319 ------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG 356 (549)
T PRK07788 319 ------------------------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYG 356 (549)
T ss_pred ------------------------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccC
Confidence 00125899999999999999999999989999999999
Q ss_pred cchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
+||++..+...... ....+++|+|+++++++|+| +++..+ ++|+.|||+|+|++++.||+++++. . . .+
T Consensus 357 ~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gY~~~~~~--~-~---~~ 426 (549)
T PRK07788 357 STEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEV---PRGVVGRIFVGNGFPFEGYTDGRDK--Q-I---ID 426 (549)
T ss_pred cchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCCC---CCCCeEEEEEeCCCccccccCCCcc--c-c---cC
Confidence 99998655433222 23457999999999999999 566554 4689999999999999999998865 2 2 45
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~ 634 (721)
|||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++.++.
T Consensus 427 --g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~- 502 (549)
T PRK07788 427 --GLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA- 502 (549)
T ss_pred --CceecCceEEEcCCCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC-
Confidence 89999999999999999999999999996 69999999999999999999999999988764 589999987532
Q ss_pred HHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
..+ .++|+++++ ++|++|++|+.|++++++ | +|++||++|++|++
T Consensus 503 -------~~~-----------------~~~l~~~~~-~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~ 547 (549)
T PRK07788 503 -------ALD-----------------EDAIKDYVR-DNLARYKVPRDVVFLDEL--P----RNPTGKVLKRELRE 547 (549)
T ss_pred -------CCC-----------------HHHHHHHHH-HhhhcCCCCcEEEEeCCC--C----CCCCcCEeHHHhhc
Confidence 000 267888998 899999999999999987 6 99999999999975
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-71 Score=632.15 Aligned_cols=529 Identities=16% Similarity=0.170 Sum_probs=407.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+..+++|+++++++|+++|+++.. .. .+..+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus 52 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 114 (628)
T TIGR02316 52 NLCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY 114 (628)
T ss_pred eHHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 456788988899999999998742 11 1233579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc---------hhHHHhhhccC-CCceEEEE
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY 231 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~~~~ii~ 231 (721)
++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+.... +....++.
T Consensus 115 ~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 194 (628)
T TIGR02316 115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLL 194 (628)
T ss_pred cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999999998643 12233222222 33456666
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHH-HHHHHhh
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~ 310 (721)
++...... ... .....+++++.........+.....++++++|+|||||||.||||+++|++++.. .......
T Consensus 195 ~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 268 (628)
T TIGR02316 195 VDRGLAPM----RLI--PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAI 268 (628)
T ss_pred EeCCCCCc----Ccc--cCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence 65321110 000 0012356665543221112223346799999999999999999999999998644 3444555
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ ++.++|++++.+|++|+++... ++.+|+.|+++++.+....... +..++..++++++|+++++|++++.|.+.
T Consensus 269 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 343 (628)
T TIGR02316 269 F-GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD----PGVWWSIVERYGVRTMFSAPTAIRVLKKQ 343 (628)
T ss_pred c-CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 6 8899999999999999998654 7788999999998543211111 22344449999999999999999987652
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... .+....++||.+++||+++++++.+++...+
T Consensus 344 ~~~~---------------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~ 378 (628)
T TIGR02316 344 DAAW---------------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGL 378 (628)
T ss_pred CCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHh
Confidence 1100 0111235899999999999999999999988
Q ss_pred CCceecccccchhcccccccCCC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc---ccccccc
Q 004961 470 GAPIGQAYGLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF 542 (721)
Q Consensus 470 g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~ 542 (721)
|..+++.||+||++..++..... ....+++|+|+||++++|+|.++|+.+ ++|+.|||+|+|| +++.|||
T Consensus 379 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~---~~g~~Gel~v~gp~~~g~~~~~~ 455 (628)
T TIGR02316 379 GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPC---GPNEKGVLTVVPPLPPGCLSTVW 455 (628)
T ss_pred CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCC---CCCCcEEEEEecCCCcccccccc
Confidence 99999999999998544332221 234589999999999999995466654 4789999999998 5789999
Q ss_pred CCCccccccccc-CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc
Q 004961 543 NNPGKTSEVYKV-DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (721)
Q Consensus 543 ~~~~~t~~~f~~-~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~ 621 (721)
++++.+.+.+.. ..+ +||+|||+|++|+||+|+|+||.||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 456 ~~~~~~~~~~~~~~~~--~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~ 532 (628)
T TIGR02316 456 GDDARFLKTYWSHFKR--PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDEL 532 (628)
T ss_pred CChHHHHHhhhhcCCC--CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCC
Confidence 999887776532 133 89999999999999999999999999997 59999999999999999999999999988753
Q ss_pred ---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
.++++|++.++.. .. +......+.++|+++++ .+|++|++|+.|++++++ | +|
T Consensus 533 ~g~~~~~~vv~~~~~~--------~~---------~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~l--P----~t 588 (628)
T TIGR02316 533 KGQVAVVFAILKESDS--------AG---------DAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAAL--P----KT 588 (628)
T ss_pred CCeEEEEEEEEcCCcc--------cc---------cccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCC--C----CC
Confidence 5889998765320 00 00001234578889998 899999999999999998 6 99
Q ss_pred cccccChHHHHHHHH
Q 004961 699 AALKIKREQLKAKFK 713 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~ 713 (721)
++||++|+.|++.+.
T Consensus 589 ~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 589 RSGKLLRRSIQALAE 603 (628)
T ss_pred CchHHHHHHHHHHHc
Confidence 999999999998764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=630.17 Aligned_cols=521 Identities=19% Similarity=0.231 Sum_probs=411.4
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
...++|+++++++|+++|+++.. .. .+..+.+||+||.++++++|++|+++|+++||+|+|++
T Consensus 68 ~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 130 (637)
T PRK00174 68 VSYNCLDRHLKTRGDKVAIIWEG-----------DD------PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYM 130 (637)
T ss_pred HHHHHHHHhhccCCCCeEEEEEC-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 35678888999999999998732 10 12345799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhccCCCceEEEEec
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~~~ 233 (721)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+......++.++.++.++
T Consensus 131 ~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (637)
T PRK00174 131 PMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVR 210 (637)
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEc
Confidence 999999999999999999999999999999999999999999999987542 33344444556677777665
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH-HHhhCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIP 312 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~ 312 (721)
...... .. .......++++..... .........++|+++|+|||||||.||||+++|++++..... ....+
T Consensus 211 ~~~~~~-----~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~- 282 (637)
T PRK00174 211 RTGGDV-----DW-VEGRDLWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF- 282 (637)
T ss_pred CCCCCc-----Cc-CCCCcccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-
Confidence 432110 00 0012234666654321 222234456789999999999999999999999998765543 33345
Q ss_pred CCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccc-cccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
++.++|++++.+|++|..+... ++.+|+.|+++++.+.. ...+ ...++..++++++|++.++|++++.+.+..
T Consensus 283 ~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 357 (637)
T PRK00174 283 DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPD-----PGRFWEVIDKHKVTIFYTAPTAIRALMKEG 357 (637)
T ss_pred CCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCC-----hHHHHHHHHhcCCeEEeecHHHHHHHHhcC
Confidence 8888999999999999988754 77789999999884321 1111 122344499999999999999999887531
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
.... .....++||.+++||+++++++.+++.+.++
T Consensus 358 ~~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~ 392 (637)
T PRK00174 358 DEHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVG 392 (637)
T ss_pred Cccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhC
Confidence 1000 0112258999999999999999999988775
Q ss_pred ---CceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccccC
Q 004961 471 ---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFN 543 (721)
Q Consensus 471 ---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~ 543 (721)
+++++.||+||++..++..... ..+.+++|+|+||++++|+| ++|..+ +.|+.|||+|+| |++++|||+
T Consensus 393 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~---~~g~~Gel~v~g~~p~~~~gy~~ 468 (637)
T PRK00174 393 GERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPL---EGGEGGNLVIKDPWPGMMRTIYG 468 (637)
T ss_pred CCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCC---CCCCcEEEEEcCCCCcccccccC
Confidence 7899999999998765543322 23457999999999999999 666554 478999999999 689999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+++.+.+.+....+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 469 ~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g 545 (637)
T PRK00174 469 DHERFVKTYFSTFK--GMYFTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKG 545 (637)
T ss_pred CHHHHHHhhhcCCC--CEEECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCC
Confidence 99988887642234 89999999999999999999999999998 5999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
+.++|+|++.++. .. .+.+.++|+++++ ++|+.|++|+.|++++++ | +|++
T Consensus 546 ~~~~a~vv~~~~~----------~~------------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~ 596 (637)
T PRK00174 546 QGIYAFVTLKGGE----------EP------------SDELRKELRNWVR-KEIGPIAKPDVIQFAPGL--P----KTRS 596 (637)
T ss_pred eEEEEEEEECCCC----------CC------------CHHHHHHHHHHHH-hhcCCccCCCEEEEcCCC--C----CCCC
Confidence 4689999987542 00 0233467888888 899999999999999988 6 9999
Q ss_pred cccChHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKD 714 (721)
Q Consensus 701 gKi~R~~l~~~~~~ 714 (721)
||++|++|++.+.+
T Consensus 597 GKi~R~~L~~~~~~ 610 (637)
T PRK00174 597 GKIMRRILRKIAEG 610 (637)
T ss_pred cchHHHHHHHHHcC
Confidence 99999999988654
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-72 Score=547.74 Aligned_cols=496 Identities=22% Similarity=0.316 Sum_probs=426.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.+++.++|+++||++|++ ||. +.+||+||+++++++|.+|+++|+++||+|.+
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~-------------d~~----------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlv 83 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVI-------------DGE----------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLV 83 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEe-------------cCc----------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4799999999999999999998 443 36999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc-----hhHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
.++|..|+++++||++++|+.+|.--|+....+|.+..+.++++.+|.+..+ .+...+...+.++++++++.++.
T Consensus 84 QLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~ 163 (542)
T COG1021 84 QLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEA 163 (542)
T ss_pred ECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCC
Confidence 9999999999999999999999999999999999999999999999998754 35667788889999999997543
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
... ...+..+........+..+.+++++|+++.+.||||.||-+..||.....+++...+.. +++
T Consensus 164 ~~~--------------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~~ 228 (542)
T COG1021 164 EHP--------------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GFD 228 (542)
T ss_pred CCc--------------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-CcC
Confidence 211 11112222222222233566788999999999999999999999999999999999988 999
Q ss_pred CCcEEEeccChHHHHHHHH--HHHHHHhcceEee---CccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
+.+++++.+|..|-|-+.. .+..+++|+++|+ .+|..-+.. |+++++|+..+||.+...+++..
T Consensus 229 ~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlqa~ 297 (542)
T COG1021 229 QQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQAA 297 (542)
T ss_pred ccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHHhh
Confidence 9999999999999988765 6778999999999 344444434 99999999999999999888753
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
.. +..+++|||.+-.||+.+++++.+++...+|
T Consensus 298 e~-----------------------------------------------~~~~LsSLrllQVGGarl~~~~Arrv~~~lg 330 (542)
T COG1021 298 EW-----------------------------------------------ERADLSSLRLLQVGGARLSATLARRVPAVLG 330 (542)
T ss_pred hc-----------------------------------------------ccCCchheeEEeecCcccCHHHHhhchhhhC
Confidence 32 1223479999999999999999999999999
Q ss_pred CceecccccchhcccccccCCCCCC---CCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCc
Q 004961 471 APIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~~~---~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
+.+.|.+||.|.-.. +...+++. ..+-|+|+ |.-|++|+| ++|+.+ ++|++|+|..+||..++|||+.|+
T Consensus 331 C~LQQVFGMAEGLvn--yTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv---~pGE~G~LltRGPYTirGYyrap~ 404 (542)
T COG1021 331 CQLQQVFGMAEGLVN--YTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPV---APGEVGELLTRGPYTIRGYYRAPE 404 (542)
T ss_pred chHHHHhhhhhhhhc--ccccCCchHheeecCCCcCCCcceeEEec-CCCCCC---CCCCcceeeecCCeeeeeeccCch
Confidence 999999999996543 33333332 26889998 788999999 777764 599999999999999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~ 623 (721)
.++++|+ .| |+|+|||++++|+||+|.+.||.||+|+ |+||+|..+|||+.|..||.|.+|++++.+|+ ++.
T Consensus 405 HNa~aF~--a~--GFYrsGD~V~~~~dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEks 479 (542)
T COG1021 405 HNARAFD--AD--GFYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKS 479 (542)
T ss_pred hhhhccC--cC--CceecCceeEecCCceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcce
Confidence 9999998 67 9999999999999999999999999999 89999999999999999999999999999986 568
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+||||+++.... ..+|+.++.+..|..|++|++|++++.+ | +|+-|||
T Consensus 480 CAfiv~~~~~~~--------------------------~~qlr~~L~~~GlAa~K~PDrie~v~~~--P----~T~VGKI 527 (542)
T COG1021 480 CAFIVVKEPPLR--------------------------AAQLRRFLRERGLAAFKLPDRIEFVDSL--P----LTAVGKI 527 (542)
T ss_pred eEEEEecCCCCC--------------------------HHHHHHHHHHcchhhhcCCcceeecccC--C----Ccccccc
Confidence 899998765321 2678899988999999999999999998 6 8999999
Q ss_pred ChHHHHHHHHHH
Q 004961 704 KREQLKAKFKDD 715 (721)
Q Consensus 704 ~R~~l~~~~~~~ 715 (721)
|+++|++++...
T Consensus 528 dKk~Lr~~l~~~ 539 (542)
T COG1021 528 DKKALRRRLASR 539 (542)
T ss_pred cHHHHHHHhhhh
Confidence 999999987653
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=612.58 Aligned_cols=509 Identities=21% Similarity=0.256 Sum_probs=412.0
Q ss_pred CCCHHHHHHHHHH-hCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 81 ASTMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~-~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
.+.++++++++++ .+|+++|+.+.+ +. ..+.+||+||.++++++|++|.++|+++||+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~-----------~~--------~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~ 102 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLD-----------AS--------RKEKYTYKELKELSNKFANVLKELGVEKGDRVF 102 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEEC-----------CC--------CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3556788998887 589999998742 11 124799999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
|+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++......... ..++.++.++.++.....
T Consensus 103 i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 179 (570)
T PRK04319 103 IFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE- 179 (570)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC-
Confidence 99999999999999999999999999999999999999999999999999876543321 245566667665533210
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
.....++.++...... ........++++++|+|||||||.||||+++|+++++.+......+ .+.++|+
T Consensus 180 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~ 248 (570)
T PRK04319 180 ---------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDV 248 (570)
T ss_pred ---------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCce
Confidence 1123456665543222 1122344678999999999999999999999999998888777777 8899999
Q ss_pred EEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+++..|++|.++... ++.++..|+++++.... .+ +..++..++++++|+++++|++++.+.+......
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---- 317 (570)
T PRK04319 249 YWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR--FS-----PERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV---- 317 (570)
T ss_pred EEecCChHHhhCchHHHHHHHhcCceEEEECCC--CC-----HHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc----
Confidence 999999999988654 77889999998873211 01 1223334999999999999999999865211000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
.....++||.+++||+++++++.+++++.+|.++++.||
T Consensus 318 -----------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG 356 (570)
T PRK04319 318 -----------------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWW 356 (570)
T ss_pred -----------------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEecee
Confidence 001125899999999999999999999989999999999
Q ss_pred cchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccccCCCcccccccccC
Q 004961 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~~~~~t~~~f~~~ 555 (721)
+||++..++..... ....+++|+|+|+++++|+| +++..+ ++|+.|||+++| ++++.|||++++.|.+.|
T Consensus 357 ~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~--- 429 (570)
T PRK04319 357 MTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNEL---PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF--- 429 (570)
T ss_pred ecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCCC---CCCCceEEEEcCCCChHHhHhcCCHHHhhhhh---
Confidence 99998765543332 34568999999999999999 555543 588999999997 899999999999999998
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~ 632 (721)
.+ |||+|||+|++|++|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++.+++ +.++|+|++.++
T Consensus 430 ~~--gw~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~ 506 (570)
T PRK04319 430 AG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPG 506 (570)
T ss_pred cC--CceEeCcEEEECCCeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCC
Confidence 56 89999999999999999999999999997 6999999999999999999999999998865 358888887653
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
. .. .+.+.++|+++++ ++|+.|++|+.|++++++ | +|++||++|++|+++.
T Consensus 507 ~----------~~------------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~i--P----~t~~GKv~r~~L~~~~ 557 (570)
T PRK04319 507 Y----------EP------------SEELKEEIRGFVK-KGLGAHAAPREIEFKDKL--P----KTRSGKIMRRVLKAWE 557 (570)
T ss_pred C----------CC------------CHHHHHHHHHHHH-HhcccccCCcEEEEeCCC--C----CCCchhhhHHHHHHHH
Confidence 2 00 1234568888888 899999999999999988 6 9999999999999885
Q ss_pred H
Q 004961 713 K 713 (721)
Q Consensus 713 ~ 713 (721)
.
T Consensus 558 ~ 558 (570)
T PRK04319 558 L 558 (570)
T ss_pred h
Confidence 3
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=615.93 Aligned_cols=530 Identities=18% Similarity=0.202 Sum_probs=406.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+..+++|+++++.+|+++|+++.. .. .+..+.+||+||.++++++|++|+++|+++||+|+++
T Consensus 53 n~~~~~l~~~~~~~p~~~A~~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 115 (629)
T PRK10524 53 NLCHNAVDRHLAKRPEQLALIAVS-----------TE------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIY 115 (629)
T ss_pred eHHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 346888999999999999998741 11 1223579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc---------hhHHHhhhccC-CCceEEEE
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY 231 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~~~~ii~ 231 (721)
++|++++++++|||+++|++++|+++.++.+++.++|++++++++|+++.. .+.+.++.... +....++.
T Consensus 116 ~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 195 (629)
T PRK10524 116 MPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLL 195 (629)
T ss_pred CCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999999997642 23333333222 23455665
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH-HHhh
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~ 310 (721)
++...... . . .......++++.........+.....++++++|+|||||||.||||+++|++++..... ....
T Consensus 196 ~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~ 269 (629)
T PRK10524 196 VDRGLAPM----A-R-VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTI 269 (629)
T ss_pred EeCCCCCc----C-c-ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence 54321100 0 0 00112345555443221111222346789999999999999999999999998655444 3444
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ ++.++|++++..|++|.++... ++.+|+.|+++++.+....... ...++..++++++|+++++|++++.+.+.
T Consensus 270 ~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 344 (629)
T PRK10524 270 F-GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD----AGIWWRIVEKYKVNRMFSAPTAIRVLKKQ 344 (629)
T ss_pred c-CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC----hHHHHHHHHHcCceEEEeCHHHHHHHHhc
Confidence 5 8889999999999999888644 6778999999988442211111 22344449999999999999999887652
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... .+....++||.+++||+++++++.+++.+.+
T Consensus 345 ~~~~---------------------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~ 379 (629)
T PRK10524 345 DPAL---------------------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEAL 379 (629)
T ss_pred Cccc---------------------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhc
Confidence 1100 0011225899999999999999999999989
Q ss_pred CCceecccccchhcccccccCC----CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc---ccccccc
Q 004961 470 GAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF 542 (721)
Q Consensus 470 g~~l~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~ 542 (721)
++++++.||+||++..+..... ...+.+++|+|+||++++|+|+++|..+ ++|+.|||+|+|| +++.|||
T Consensus 380 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~---~~g~~Gel~i~gp~~~~~~~~~~ 456 (629)
T PRK10524 380 GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPC---GPNEKGVLVIEGPLPPGCMQTVW 456 (629)
T ss_pred CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCC---CCCCcEEEEEcCCCChhhcCCcc
Confidence 9999999999999843322221 1234589999999999999995467654 5889999999998 5789999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC--
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH-- 620 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~-- 620 (721)
++++.+.+.+.... +.+||+|||+|++|+||+++|+||.||+||++ |++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 457 ~~~~~~~~~~~~~~-~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~-G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~ 534 (629)
T PRK10524 457 GDDDRFVKTYWSLF-GRQVYSTFDWGIRDADGYYFILGRTDDVINVA-GHRLGTREIEESISSHPAVAEVAVVGVKDALK 534 (629)
T ss_pred CChHHHHHhhhccC-CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeC-CEEeCHHHHHHHHHhCCCcceEEEEccccCCC
Confidence 99988776553211 22899999999999999999999999999985 999999999999999999999999998876
Q ss_pred -ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCc
Q 004961 621 -NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 621 -~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 699 (721)
+.++++|++.++.. . .+.+..+.+.++|+++++ ++|+.|++|+.|++++++ | +|+
T Consensus 535 g~~~~~~vv~~~~~~--------~---------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~l--P----~T~ 590 (629)
T PRK10524 535 GQVAVAFVVPKDSDS--------L---------ADREARLALEKEIMALVD-SQLGAVARPARVWFVSAL--P----KTR 590 (629)
T ss_pred CeEEEEEEEECCCCc--------c---------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCC--C----CCC
Confidence 36899999875320 0 011112345578889998 899999999999999988 6 999
Q ss_pred ccccChHHHHHHHH
Q 004961 700 ALKIKREQLKAKFK 713 (721)
Q Consensus 700 ~gKi~R~~l~~~~~ 713 (721)
+||++|+.|++.+.
T Consensus 591 sGKi~R~~L~~~~~ 604 (629)
T PRK10524 591 SGKLLRRAIQAIAE 604 (629)
T ss_pred CcchHHHHHHHHHc
Confidence 99999999998764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=728.02 Aligned_cols=520 Identities=20% Similarity=0.272 Sum_probs=426.2
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|... +.+++++...+++.+...++ ....+.+...|++++|+++++++|+++|+++ ++.
T Consensus 3062 p~~~---~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~---- 3119 (3956)
T PRK12467 3062 PAAR---LGELPTLAAHERRQVLHAWN---ATAAAYPSERLVHQLIEAQVARTPEAPALVF------------GDQ---- 3119 (3956)
T ss_pred cCCc---hhhccCCCHHHHHHHHHhhc---cCCCCCCccccHHHHHHHHHHhCCCcceEee------------CCc----
Confidence 6666 88899998888887754444 1233344457999999999999999999986 332
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|+.|.++|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 3120 -------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~ 3192 (3956)
T PRK12467 3120 -------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSG 3192 (3956)
T ss_pred -------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++....+.+... ... .++.++.. .........+.....++++|||+|
T Consensus 3193 ~~~vlt~~~~~~~~~~~----~~~-~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~a~ii~ 3244 (3956)
T PRK12467 3193 VKLLLTQAHLLEQLPAP----AGD-TALTLDRL-----------------------DLNGYSENNPSTRVMGENLAYVIY 3244 (3956)
T ss_pred CcEEEechhhhhhcccc----cCC-ceeeecch-----------------------hhcccCCCCCcccCCCCceEEEEE
Confidence 99999987664433211 111 11221111 000111111223457899999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++++.+.+....+ +++++|++++++|++|+.++..++.+|+.|+++++.+ ....+. .
T Consensus 3245 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~~-----~ 3317 (3956)
T PRK12467 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWDP-----E 3317 (3956)
T ss_pred ccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC-cccCCH-----H
Confidence 99999999999999999999999998888 9999999999999999999988999999999999865 222222 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...+.++++|++.++|++++.+.+... ..
T Consensus 3318 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~-------------------------------------------------~~ 3348 (3956)
T PRK12467 3318 ELWQAIHAHRISIACFPPAYLQQFAEDAG-------------------------------------------------GA 3348 (3956)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------------------------cc
Confidence 23444999999999999999998865210 00
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccchhcccccccCCCC-----CCCCccCCCcCcceEEEEecCCC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEG 516 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~p~~~v~i~d~~~~ 516 (721)
..++||.+++|||++++++.+.+.+.+ ++.++|.||+||+++.++...... ....++|+|++|++++|+| +++
T Consensus 3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~ 3427 (3956)
T PRK12467 3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQL 3427 (3956)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCC
Confidence 125899999999999999988887765 678999999999998776543321 1236899999999999998 566
Q ss_pred CcccCCCCCCcceEEEccccccccccCCCcccccccccCC---CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeee
Q 004961 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (721)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~ 593 (721)
+. +++|+.|||+|+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||+|+|+||+||+||++ |+|
T Consensus 3428 ~~---vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~-G~r 3503 (3956)
T PRK12467 3428 NP---VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFR 3503 (3956)
T ss_pred CC---CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeec-eEe
Confidence 55 45899999999999999999999999999997432 355899999999999999999999999999985 999
Q ss_pred ecchHHHHHHhcCcccceEEEEecCC--CceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHH
Q 004961 594 ISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671 (721)
Q Consensus 594 v~~~eIE~~l~~~p~V~~~~V~g~~~--~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 671 (721)
|+|.|||++|.+||+|.+|+|++..+ .+.++|||++.... ....++|+++++
T Consensus 3504 Ie~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~-------------------------~~~~~~l~~~l~- 3557 (3956)
T PRK12467 3504 IELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ-------------------------GDWRETLRDHLA- 3557 (3956)
T ss_pred ecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC-------------------------cccHHHHHHHHh-
Confidence 99999999999999999999998653 35799999987531 011367888898
Q ss_pred CCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 672 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 672 ~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
.+||.||+|+.|++++++ | +|++|||||++|.+.+
T Consensus 3558 ~~Lp~y~vP~~~~~l~~l--P----~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3558 ASLPDYMVPAQLLVLAAM--P----LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred ccCChhhCCCeeeeeccC--C----CCCCCccchhhcCCCC
Confidence 999999999999999998 6 9999999999998654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=601.67 Aligned_cols=501 Identities=22% Similarity=0.313 Sum_probs=408.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|++.++.+|+++|+++.. ++ .+.++.+||+||.++++++|++|.+.|+++||+|++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val 85 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSC 85 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3689999999999999999998631 11 133468999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc-----hhHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++.. .+.+..+...++.++.++.++..
T Consensus 86 ~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (547)
T PRK13295 86 QLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD 165 (547)
T ss_pred ECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC
Confidence 9999999999999999999999999999999999999999999999998754 23344444556666777765432
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCC-----C--CCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGK-----R--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (721)
.. .++.++..... . .........++++++|+|||||||.||||++||++++..+....
T Consensus 166 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~ 230 (547)
T PRK13295 166 GA---------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYA 230 (547)
T ss_pred Cc---------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHH
Confidence 11 12333322110 0 01112334678999999999999999999999999999988877
Q ss_pred hhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHH
Q 004961 309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (721)
Q Consensus 309 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~ 384 (721)
..+ .+.++|++++.+|++|.+++.. ++.++..|+++++.+ +..+.+ .++++++|++.++|+++.
T Consensus 231 ~~~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-----------~l~~~~vt~~~~~p~~~~ 298 (547)
T PRK13295 231 ERL-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAE-----------LIRTEGVTFTMASTPFLT 298 (547)
T ss_pred HHh-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHH-----------HHHHcCCcEEEecHHHHH
Confidence 777 8899999999999999998765 778899999998843 333333 389999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHH
Q 004961 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (721)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~ 464 (721)
.+....... ....+++|.+++||+++++++.++
T Consensus 299 ~l~~~~~~~-----------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~ 331 (547)
T PRK13295 299 DLTRAVKES-----------------------------------------------GRPVSSLRTFLCAGAPIPGALVER 331 (547)
T ss_pred HHHhccccc-----------------------------------------------CCCcccceEEEEecCCCCHHHHHH
Confidence 886531100 011258999999999999999999
Q ss_pred HHHhhCCceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccccccc
Q 004961 465 INICMGAPIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (721)
Q Consensus 465 ~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (721)
+.+.+++++++.||+||++.+++..... .....++|+|+|+++++|+| +++.. ++.|+.|||+|+|++++.||+
T Consensus 332 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~ 407 (547)
T PRK13295 332 ARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAP---LPAGQIGRLQVRGCSNFGGYL 407 (547)
T ss_pred HHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCC---CCCCCCCeEEEEcCccccccc
Confidence 9988899999999999998765544322 12346899999999999999 55554 347899999999999999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC--
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH-- 620 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~-- 620 (721)
++|+.|+.. .+ |||+|||+|+++++|+++|.||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++.
T Consensus 408 ~~~~~t~~~----~~--g~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~ 480 (547)
T PRK13295 408 KRPQLNGTD----AD--GWFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERL 480 (547)
T ss_pred CCccccccC----CC--CCeecceEEEEcCCceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCC
Confidence 999998775 34 79999999999999999999999999997 6999999999999999999999999998765
Q ss_pred -ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCc
Q 004961 621 -NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 621 -~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 699 (721)
..++++|++.++. ..+ .+++.+++++.+|+.|++|+++++++++ | +|+
T Consensus 481 g~~~~~~v~~~~~~----------~~~---------------~~~l~~~~~~~~l~~~~~P~~i~~v~~l--P----~t~ 529 (547)
T PRK13295 481 GERACAFVVPRPGQ----------SLD---------------FEEMVEFLKAQKVAKQYIPERLVVRDAL--P----RTP 529 (547)
T ss_pred CcEEEEEEEeCCCC----------CCC---------------HHHHHHHHHhccCccccCCcEEEEeccC--C----CCC
Confidence 3689999886532 000 2567777774589999999999999988 6 999
Q ss_pred ccccChHHHHHHHHH
Q 004961 700 ALKIKREQLKAKFKD 714 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~ 714 (721)
+||++|++|++++.+
T Consensus 530 sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 530 SGKIQKFRLREMLRG 544 (547)
T ss_pred CccccHHHHHHHHhc
Confidence 999999999988764
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=604.57 Aligned_cols=515 Identities=24% Similarity=0.346 Sum_probs=404.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Va 159 (721)
..|+.++|++.++++|+++|++. +++ .+||+||.++++++|++|.+ .|+++||+|+
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Va 79 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIA 79 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 35899999999999999999985 333 69999999999999999997 5999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
|+++|+++|++++|||+++|++++|++|.++.+++.+++++++++++|++......+.+..... .++.++..+......
T Consensus 80 i~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 158 (562)
T PRK05677 80 VQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLP 158 (562)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEeccccccc
Confidence 9999999999999999999999999999999999999999999999999887665555443322 334444432111000
Q ss_pred ---c-------CCccCC-C--CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH
Q 004961 240 ---D-------SGVSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (721)
Q Consensus 240 ---~-------~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (721)
. ..+... . .......+.+................++++++|+|||||||.||||+++|++++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~ 238 (562)
T PRK05677 159 PLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQ 238 (562)
T ss_pred chhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHH
Confidence 0 000000 0 00112344554443332222233456799999999999999999999999999887766
Q ss_pred HHhhC-CCCC-CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc-cccccccchhhccCccccceeecceEEeechHH
Q 004961 307 IKTLI-PNPG-RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382 (721)
Q Consensus 307 ~~~~~-~~~~-~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~ 382 (721)
....+ ..+. ..+++++.+|++|.+++.. .+.++..|++.++.. +... ..+...++++++|+++++|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~ 310 (562)
T PRK05677 239 CRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDL--------PAMVKELGKWKFSGFVGLNTL 310 (562)
T ss_pred HHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccH--------HHHHHHHHHcCceEEecHHHH
Confidence 55443 1233 3478899999999999865 556677888766532 2211 112233899999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHH
Q 004961 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462 (721)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~ 462 (721)
+..+.+.... +....+++|.+++||+++++++.
T Consensus 311 ~~~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gG~~~~~~~~ 343 (562)
T PRK05677 311 FVALCNNEAF-----------------------------------------------RKLDFSALKLTLSGGMALQLATA 343 (562)
T ss_pred HHHHHhCccc-----------------------------------------------ccCChhhceEEEEcCccCCHHHH
Confidence 9887652100 00011489999999999999999
Q ss_pred HHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccccccc
Q 004961 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (721)
Q Consensus 463 ~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (721)
+.+++.+|+++++.||+||++.+++.........+++|+|+|+++++|+| +++.. ++.|+.|||+|+|+.++.||+
T Consensus 344 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~ 419 (562)
T PRK05677 344 ERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNE---LPLGEVGELCVKGPQVMKGYW 419 (562)
T ss_pred HHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCC---CCCCCCeEEEEecCccchhhc
Confidence 99999889999999999999877766555445668999999999999999 55654 458899999999999999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc-
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN- 621 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~- 621 (721)
++|+.|++.|. .+ |||+|||+|++|++|+++|.||.||+||++ |++|+|.|||++|.+||+|.+++|++.+++.
T Consensus 420 ~~~~~t~~~~~--~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~-G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~ 494 (562)
T PRK05677 420 QRPEATDEILD--SD--GWLKTGDIALIQEDGYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVLQCAAIGVPDEKS 494 (562)
T ss_pred CCchhhhhccC--CC--CcccccceEEECCCCcEEEEecCcCeEEeC-CEEECHHHHHHHHHhCCCccEEEEEeccCccC
Confidence 99999999985 46 899999999999999999999999999985 9999999999999999999999999988653
Q ss_pred --eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCc
Q 004961 622 --YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 622 --~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 699 (721)
.++++|++.++. ..+ .++|+++++ .+|++|++|+.|++++++ | +|+
T Consensus 495 g~~~~~~v~~~~~~--------~~~-----------------~~~l~~~~~-~~l~~~~~P~~i~~v~~i--P----~t~ 542 (562)
T PRK05677 495 GEAIKVFVVVKPGE--------TLT-----------------KEQVMEHMR-ANLTGYKVPKAVEFRDEL--P----TTN 542 (562)
T ss_pred CceEEEEEEeCCCC--------CCC-----------------HHHHHHHHH-HhhhhccCCcEEEEeccC--C----CCC
Confidence 577888765431 000 257888888 899999999999999998 6 999
Q ss_pred ccccChHHHHHHHHHH
Q 004961 700 ALKIKREQLKAKFKDD 715 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~~ 715 (721)
+||++|++|++++.++
T Consensus 543 sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 543 VGKILRRELRDEELKK 558 (562)
T ss_pred cccccHHHHHHHHHHh
Confidence 9999999999877654
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=612.38 Aligned_cols=510 Identities=15% Similarity=0.131 Sum_probs=391.4
Q ss_pred hCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHH
Q 004961 94 SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ 173 (721)
Q Consensus 94 ~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 173 (721)
++++++|+++.. . .+..+.+||+||.++++++|++|+++|+++||+|+|+++|++|+++++|
T Consensus 96 ~~~~~~a~~~~~-----------~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~l 157 (652)
T TIGR01217 96 AAGTEPALLYVD-----------E-------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAML 157 (652)
T ss_pred cCCCCeEEEEEC-----------C-------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 468999998742 1 1233579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc---------hhHHHhhhccCCCceEEEEecCCCCCccCCcc
Q 004961 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244 (721)
Q Consensus 174 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 244 (721)
||+++|++++|+++.++++++.++|++++++++|+++.. .+.+.++...++.++.++.++......... .
T Consensus 158 A~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 236 (652)
T TIGR01217 158 ATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEA-P 236 (652)
T ss_pred HHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccc-c
Confidence 999999999999999999999999999999999998753 345555556677777777765322110000 0
Q ss_pred CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHH-HHHHHHhhCCCCCCCcEEEec
Q 004961 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAY 323 (721)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~d~~l~~ 323 (721)
. ......|+++...............++|+++|+|||||||.||||+++|++++. ........+ ++.++|+++++
T Consensus 237 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~ 312 (652)
T TIGR01217 237 K---IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYY 312 (652)
T ss_pred c---ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEe
Confidence 0 011245677654322211122344668999999999999999999999999764 344444455 88999999999
Q ss_pred cChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHH
Q 004961 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN 403 (721)
Q Consensus 324 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 403 (721)
+|++|++. ..++.+|+.|+++++.+....... +..++..++++++|++..+|++++.+......
T Consensus 313 ~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~----~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~----------- 376 (652)
T TIGR01217 313 TTTGWMMW-NWLVSGLATGATLVLYDGSPGFPA----TNVLWDIAERTGATLFGTSAKYVMACRKAGVH----------- 376 (652)
T ss_pred CCcchhhh-HHHHHHHhcCcEEEEECCCCCCCC----chHHHHHHHHhCCeEEecCHHHHHHHHhcCCC-----------
Confidence 99999754 335578999999998542211111 12334449999999998888877665431000
Q ss_pred HHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC--Cceecccccch
Q 004961 404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG--APIGQAYGLTE 481 (721)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g--~~l~~~YG~TE 481 (721)
.......++||.+++||+++++++.+++.+.++ +.+.+.||+||
T Consensus 377 ----------------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE 422 (652)
T TIGR01217 377 ----------------------------------PARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTD 422 (652)
T ss_pred ----------------------------------ccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHH
Confidence 000112258999999999999999999988775 45778999999
Q ss_pred hccccccc-CCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc--cccccccCCCcccc--cccccCC
Q 004961 482 TCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTS--EVYKVDE 556 (721)
Q Consensus 482 ~~~~~~~~-~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~t~--~~f~~~~ 556 (721)
++...... +......+++|.|.+|++++|+| ++|..+ +|+.|||+++|| +++.|||+|++.|. +.+....
T Consensus 423 ~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~----~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~ 497 (652)
T TIGR01217 423 ICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV----TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY 497 (652)
T ss_pred HhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC----CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence 75443322 22223458899999999999999 666543 478999999996 68999999998764 2322112
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~ 633 (721)
+ |||+|||+|++|+||+|+|+||.||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.++.
T Consensus 498 ~--g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~ 574 (652)
T TIGR01217 498 P--GVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA 574 (652)
T ss_pred C--CEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCC
Confidence 4 79999999999999999999999999996 6999999999999999999999999999875 3699999987542
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
+. .+++.++|+++++ ++|++|++|+.|++++++ | +|++|||+|+.|++.+.
T Consensus 575 ----------~~------------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l--P----~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 575 ----------TL------------DDALLDRIKRTIR-AGLSPRHVPDEIIEVPGI--P----HTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred ----------CC------------CHHHHHHHHHHHH-hhCCCCcCCCEEEECCCC--C----CCCCccChHHHHHHHHc
Confidence 10 0234578888888 899999999999999998 6 99999999999998874
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-69 Score=671.55 Aligned_cols=577 Identities=17% Similarity=0.188 Sum_probs=419.9
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCC-CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCccee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG-ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFE 121 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~ 121 (721)
|... +.++++++..+.+.+.... ....|+. ..+++++|+++++++|+++|+++.... . +.
T Consensus 204 p~~~---l~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~a~~~pd~~A~~~~~~~----~---~~---- 264 (1389)
T TIGR03443 204 PDEP---IGKVSLITPSQKSLLPDPT-----KDLDWSGFRGAIHDIFADNAEKHPDRTCVVETPSF----L---DP---- 264 (1389)
T ss_pred cCCc---eecccCCCHHHHhhhhccc-----cccCcCcccCcHHHHHHHHHHhCCCCeEEEecccc----c---cc----
Confidence 7777 8888887776655432111 1122322 368999999999999999999853100 0 00
Q ss_pred eecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhc
Q 004961 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201 (721)
Q Consensus 122 ~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~ 201 (721)
....+.+||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.++++++
T Consensus 265 ---~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~ 341 (1389)
T TIGR03443 265 ---SSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVA 341 (1389)
T ss_pred ---cCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhc
Confidence 01234799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEECccch---hHHHhhhcc----CCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCC--CCCCCCCCC
Q 004961 202 QVTTLICDSKQL---KKLSAVSSS----LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPVDPSLP 272 (721)
Q Consensus 202 ~~~~vi~~~~~~---~~~~~~~~~----~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (721)
+++++|++.... ..+...... ...+..+...+...... . ... ....+...... .........
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~-~~~~~~~~~~~~~~~~~~~~~~ 412 (1389)
T TIGR03443 342 KPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG-----G---SLE-GGETDVLAPYQALKDTPTGVVV 412 (1389)
T ss_pred CCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc-----c---ccc-cccccccccccccccCCCCCcC
Confidence 999999876421 111111110 00111111111000000 0 000 00000000000 000111234
Q ss_pred CCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCcccc
Q 004961 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352 (721)
Q Consensus 273 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~ 352 (721)
.++|+|+|+|||||||.||||+++|+++++.+.+....+ ++.++|++++..|++|+.++..++.+|+.|+++++.+...
T Consensus 413 ~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~ 491 (1389)
T TIGR03443 413 GPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADD 491 (1389)
T ss_pred CCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhh
Confidence 678999999999999999999999999999998888888 8999999999999999999988999999999999855433
Q ss_pred ccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHH
Q 004961 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (721)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (721)
..+. ..+...++++++|+++++|++++.+.....
T Consensus 492 ~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------------------------- 525 (1389)
T TIGR03443 492 IGTP-----GRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------------------------- 525 (1389)
T ss_pred ccCH-----HHHHHHHHHhCCeEEEeCHHHHHHHHhccc-----------------------------------------
Confidence 2222 123334899999999999999988754210
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccchhcccccccCCCC-----------CCCCccC
Q 004961 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDD-----------PSVGRVG 500 (721)
Q Consensus 433 ~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG 500 (721)
...+++|.+++||+++++...+.+.... +++++|.||+||++..++...... ....++|
T Consensus 526 ---------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 596 (1389)
T TIGR03443 526 ---------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAG 596 (1389)
T ss_pred ---------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCC
Confidence 0114899999999999999988777654 789999999999987666432211 1236799
Q ss_pred CCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC------------------------
Q 004961 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE------------------------ 556 (721)
Q Consensus 501 ~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~------------------------ 556 (721)
+|+++++++|+|.++. .. .+++|+.|||||+||++++||+|+|+.|+++|..++
T Consensus 597 ~~~~~~~~~ivd~~~~-~~-~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1389)
T TIGR03443 597 KGMKNVQLLVVNRNDR-TQ-TCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLG 674 (1389)
T ss_pred CccCCCEEEEECCccC-CC-cCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCC
Confidence 9999999999994332 11 256899999999999999999999999999995320
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~ 633 (721)
++.+||+|||+|++++||+|+|+||.||+||+ +|+||+|.|||++|.+||.|.+++|++.++. ..++|+|++..+.
T Consensus 675 ~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~ 753 (1389)
T TIGR03443 675 PRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKS 753 (1389)
T ss_pred CccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcc
Confidence 12489999999999999999999999999997 6999999999999999999999999876543 4699999986321
Q ss_pred --HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 634 --LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 634 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
...+...... ..+....+..........++++++++ ++||.||+|..+++++.+ | +|++|||||++|++.
T Consensus 754 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~l--P----~t~~GKidr~~L~~~ 825 (1389)
T TIGR03443 754 DELEEFKSEVDD-EESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKL--P----LNPNGKVDKPALPFP 825 (1389)
T ss_pred cccccccccccc-ccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccC--C----CCCCccccHhhcCCC
Confidence 1000000000 00000011111112334578889998 899999999999999988 6 999999999999765
Q ss_pred HHHHHH
Q 004961 712 FKDDLQ 717 (721)
Q Consensus 712 ~~~~i~ 717 (721)
+.++++
T Consensus 826 ~~~~~~ 831 (1389)
T TIGR03443 826 DTAQLA 831 (1389)
T ss_pred chhhhh
Confidence 554443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=613.39 Aligned_cols=518 Identities=14% Similarity=0.128 Sum_probs=399.2
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
++.+.+.++ .+|+++|+++.. . .+..+.+||+||.++++++|++|+++|+++||+|+|++
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~-----------~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 146 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRG-----------E-------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYL 146 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEEC-----------C-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 444444432 589999998742 1 13346899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc---------hhHHHhhhccCCCceEEEEec
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~~ 233 (721)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+...++.++.++.++
T Consensus 147 ~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (655)
T PRK03584 147 PNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVP 226 (655)
T ss_pred CCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEe
Confidence 99999999999999999999999999999999999999999999998753 234444555667777777665
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHH-HHHHHhhCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTLIP 312 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~ 312 (721)
...... ..........|+++...............++++++|+|||||||.||||++||++++.. .......+
T Consensus 227 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~- 300 (655)
T PRK03584 227 YLGPAA-----AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC- 300 (655)
T ss_pred cCCCcc-----cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-
Confidence 332100 00001123456666542222222234456799999999999999999999999997644 55555556
Q ss_pred CCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 392 (721)
.+.++|+++++.++.|+... ..+.+|+.|+++++.+....... +..++..++++++|++.++|++++.+.+....
T Consensus 301 ~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 375 (655)
T PRK03584 301 DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD----PNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV 375 (655)
T ss_pred CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCC----HHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence 88999999999999987543 35678999999998542211111 12234449999999999999999987642100
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh--C
Q 004961 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--G 470 (721)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~--g 470 (721)
. ......++||.+++||+++++++.+++.+.+ +
T Consensus 376 ~---------------------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~ 410 (655)
T PRK03584 376 P---------------------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKAD 410 (655)
T ss_pred c---------------------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCC
Confidence 0 0001125899999999999999999998887 4
Q ss_pred CceecccccchhcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc--cccccccCCCcc
Q 004961 471 APIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGK 547 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~ 547 (721)
+.+.+.||+||++........ .....+++|.|+||++++|+| ++|..+ +|+.|||+|+|| +++.|||++++.
T Consensus 411 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~----~g~~GeL~v~gp~p~~~~gy~~~~~~ 485 (655)
T PRK03584 411 VWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV----VGEVGELVCTKPFPSMPLGFWNDPDG 485 (655)
T ss_pred ceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC----CCCceEEEEccCCCCCcceeeCCCcc
Confidence 789999999998654433222 233558999999999999999 556543 578999999996 799999999986
Q ss_pred cc--cccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ce
Q 004961 548 TS--EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NY 622 (721)
Q Consensus 548 t~--~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~ 622 (721)
+. +.+....+ |||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ +.
T Consensus 486 ~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~ 562 (655)
T PRK03584 486 SRYRDAYFDTFP--GVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVR 562 (655)
T ss_pred chHHHhhhccCC--CEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEE
Confidence 54 22211123 79999999999999999999999999997 6999999999999999999999999998864 46
Q ss_pred EEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccc
Q 004961 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALK 702 (721)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gK 702 (721)
++|+|++.++. .. .+.+.++|+++++ ++|++|++|+.|++++++ | +|++||
T Consensus 563 ~~a~vv~~~~~----------~~------------~~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~l--P----~t~sGK 613 (655)
T PRK03584 563 MPLFVVLAEGV----------TL------------DDALRARIRTTIR-TNLSPRHVPDKIIAVPDI--P----RTLSGK 613 (655)
T ss_pred EEEEEEECCCC----------CC------------cHHHHHHHHHHHH-hhCCCCcCCCEEEECCCC--C----CCCCcc
Confidence 89999987532 00 1234567888888 899999999999999998 6 999999
Q ss_pred cChHHHHHHHH
Q 004961 703 IKREQLKAKFK 713 (721)
Q Consensus 703 i~R~~l~~~~~ 713 (721)
|+|+.|++.+.
T Consensus 614 i~r~~lr~~~~ 624 (655)
T PRK03584 614 KVELPVKKLLH 624 (655)
T ss_pred chHHHHHHHHc
Confidence 99999998874
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-69 Score=604.99 Aligned_cols=505 Identities=20% Similarity=0.241 Sum_probs=392.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+.|+.+.|.++|+++|+++|+... ++. +.+||+||.++++++|+.|.+.|+++||+|+|
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i 71 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVLV 71 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 368999999999999999999753 332 36999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++........+......+. ++..+......
T Consensus 72 ~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 149 (540)
T PRK05857 72 ISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR- 149 (540)
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc-
Confidence 9999999999999999999999999999999999999999999999999865432222211122222 22222111000
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh----hCCCCCC
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGR 316 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~ 316 (721)
. ..... . ...........++++++++|||||||.||||++||+++.++...... .+ .+..
T Consensus 150 ---------~---~~~~~-~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~ 213 (540)
T PRK05857 150 ---------E---SEHSL-D--AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVV 213 (540)
T ss_pred ---------c---ccccc-c--ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-cccc
Confidence 0 00000 0 00011123346789999999999999999999999999877654332 22 5567
Q ss_pred CcEEEeccChHHHHHHHHHHHHHHhcceEeeC--ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 317 ~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
+++.++.+|++|.+++...+.+++.|+++++. ++.. ++..++++++|+++++|++++.+.+.....
T Consensus 214 ~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~-----------~~~~i~~~~it~~~~~P~~~~~l~~~~~~~- 281 (540)
T PRK05857 214 GETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTS-----------LLEILTTNAVATTCLVPTLLSKLVSELKSA- 281 (540)
T ss_pred CceeeecCCccccchHHHHHHHhhcceeEEecCCChhH-----------HHHHHHhcCcceEEeChHHHHHHHhccccC-
Confidence 88999999999999998888889999998773 2233 333499999999999999999887532100
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcee
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~ 474 (721)
....+++|.+++||++++....+++. .+|++++
T Consensus 282 ----------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~ 314 (540)
T PRK05857 282 ----------------------------------------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTA 314 (540)
T ss_pred ----------------------------------------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeee
Confidence 01125899999999999988776554 5799999
Q ss_pred cccccchhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCC-ccc--CCCCCCcceEEEccccccccccCCCc
Q 004961 475 QAYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGG-YKT--SDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~-~~~--~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
+.||+||++......... ..+.+++|+|++|++++|+|+ ++. ..+ .++.|+.|||+|+|++++.|||++++
T Consensus 315 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~-~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~ 393 (540)
T PRK05857 315 QVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT-DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPE 393 (540)
T ss_pred cccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECc-cccCccccccCCCCCcceEEEeCcchhhhhhCCcc
Confidence 999999998543322221 124579999999999999984 333 222 12457899999999999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~ 623 (721)
.|.+.| .+ |||+|||+|++|++|+++|.||.||+||+ +|++|+|.|||++|..||+|.+|+|++.++.. .+
T Consensus 394 ~t~~~~---~~--g~~~TGDlg~~d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~ 467 (540)
T PRK05857 394 RTAEVL---ID--GWVNTGDLLERREDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALV 467 (540)
T ss_pred chhhhc---CC--CceeccceEEEcCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccce
Confidence 999998 66 89999999999999999999999999997 69999999999999999999999999988653 46
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+++|++.+.. ++...+++.+.+.+.++ ++|++|++|+.+++++++ | +|++||+
T Consensus 468 ~~~vv~~~~~--------------------~~~~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~~i--P----~t~~GKi 520 (540)
T PRK05857 468 GLAVVASAEL--------------------DESAARALKHTIAARFR-RESEPMARPSTIVIVTDI--P----RTQSGKV 520 (540)
T ss_pred EEEEEeCCCC--------------------ChhhHHHHHHHHHHHHH-hhhccccCCeEEEEhhcC--C----CCCCcce
Confidence 6666655321 01112345677777887 789999999999999988 6 9999999
Q ss_pred ChHHHHHHHHHHHH
Q 004961 704 KREQLKAKFKDDLQ 717 (721)
Q Consensus 704 ~R~~l~~~~~~~i~ 717 (721)
+|++|++.++++-.
T Consensus 521 ~r~~l~~~~~~~~~ 534 (540)
T PRK05857 521 MRASLAAAATADKA 534 (540)
T ss_pred eHHHHHHhhhhccc
Confidence 99999999886543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=602.15 Aligned_cols=518 Identities=23% Similarity=0.304 Sum_probs=417.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~Va 159 (721)
..|+.++|.++++++|+++|+.+ +++ .+||+||.+++.++|..|.+. |+++||+|+
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~ 65 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVL 65 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 36899999999999999999986 332 699999999999999999999 999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCC--
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS-- 237 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-- 237 (721)
|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......+ .++.++.......
T Consensus 66 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 144 (546)
T PRK08314 66 LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLP 144 (546)
T ss_pred EECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcc
Confidence 9999999999999999999999999999999999999999999999999988777666544433 2334443221100
Q ss_pred -CccCCccC---------CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH
Q 004961 238 -EKDSGVSG---------GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (721)
Q Consensus 238 -~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (721)
........ ......+..|++...... ........++++++|+|||||||.||||++||++++..+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~ 222 (546)
T PRK08314 145 AEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGS 222 (546)
T ss_pred cccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 00000000 001123345666554321 112234567899999999999999999999999999998888
Q ss_pred HhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHH
Q 004961 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (721)
Q Consensus 308 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 386 (721)
...+ .+.++|++++.+|++|.+|+.. ++.++..|+++++.+... ...++..++++++|++.++|+++..+
T Consensus 223 ~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l 293 (546)
T PRK08314 223 VLWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWD--------REAAARLIERYRVTHWTNIPTMVVDF 293 (546)
T ss_pred HHhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCC--------HHHHHHHHHHhcCceecccHHHHHHH
Confidence 7777 8899999999999999999865 667899999999854321 11223338999999999999999887
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHH
Q 004961 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~ 466 (721)
...... .....+++|.+++||+++++++.+++.
T Consensus 294 l~~~~~-----------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~ 326 (546)
T PRK08314 294 LASPGL-----------------------------------------------AERDLSSLRYIGGGGAAMPEAVAERLK 326 (546)
T ss_pred HhCCCc-----------------------------------------------cccCchhhheeeeccccCCHHHHHHHH
Confidence 642100 001124789999999999999999999
Q ss_pred HhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCc
Q 004961 467 ICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 467 ~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
+.+++++++.||+||++..+..........+++|+|+|+++++|+|++++..+ +.|+.|||+|+|++++.||+++++
T Consensus 327 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~gY~~~~~ 403 (546)
T PRK08314 327 ELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEEL---PPGEVGEIVVHGPQVFKGYWNRPE 403 (546)
T ss_pred HHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCC---CCCCceEEEEECCchhccccCChh
Confidence 88899999999999998776655544445689999999999999996666654 477899999999999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~ 623 (721)
.|.+.|.. .++.+||+|||+|++|++|++++.||.||+||+ +|++|+|.|||++|.++|+|.+++|++.++. +.+
T Consensus 404 ~t~~~f~~-~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~ 481 (546)
T PRK08314 404 ATAEAFIE-IDGKRFFRTGDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETV 481 (546)
T ss_pred Hhhhhhhh-cCCCceEecCCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCcee
Confidence 99988852 244479999999999999999999999999997 5999999999999999999999999998765 458
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+|+|+++++... .. ..++++++++ ++|+.|++|+.+++++++ | +|++||+
T Consensus 482 ~a~v~~~~~~~~--------~~---------------~~~~l~~~~~-~~l~~~~~P~~~~~v~~i--P----~t~~GKv 531 (546)
T PRK08314 482 KAVVVLRPEARG--------KT---------------TEEEIIAWAR-EHMAAYKYPRIVEFVDSL--P----KSGSGKI 531 (546)
T ss_pred EEEEEECCCCCC--------CC---------------CHHHHHHHHH-HhcccCCCCcEEEEecCC--C----CCCccce
Confidence 999998764200 00 0267888898 899999999999999998 6 9999999
Q ss_pred ChHHHHHHHHHH
Q 004961 704 KREQLKAKFKDD 715 (721)
Q Consensus 704 ~R~~l~~~~~~~ 715 (721)
+|++|++..++.
T Consensus 532 ~r~~L~~~~~~~ 543 (546)
T PRK08314 532 LWRQLQEQEKAR 543 (546)
T ss_pred eHHHHHHHHhhh
Confidence 999998776553
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-68 Score=599.26 Aligned_cols=487 Identities=19% Similarity=0.225 Sum_probs=398.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++.++|.++++++|+++|++. ++. .+||+||.++++++|++|.++|+++|++|+++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~ 99 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM 99 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5899999999999999999985 222 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+.......+....++......
T Consensus 100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 174 (537)
T PRK13382 100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED----- 174 (537)
T ss_pred ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-----
Confidence 999999999999999999999999999999999999999999999999877666655444344444444332211
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
....++++....... .....+++.++++|||||||.||||+++|+++..........+ .+..+++++
T Consensus 175 ---------~~~~~~~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l 241 (537)
T PRK13382 175 ---------HDLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTV 241 (537)
T ss_pred ---------ccccHHHHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEE
Confidence 012344443322111 1223468899999999999999999999999988888777777 788999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
..+|++|.+++...+.++..|+++++. ++..+.+. ++++++|++.++|++++.+.+......
T Consensus 242 ~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~---- 306 (537)
T PRK13382 242 IVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVR---- 306 (537)
T ss_pred EecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhc----
Confidence 999999999998788889999999883 33333333 999999999999999998865311000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
...+++++|.+++||+++++++.+.+.+.+|.+++|.||
T Consensus 307 -----------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG 345 (537)
T PRK13382 307 -----------------------------------------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYN 345 (537)
T ss_pred -----------------------------------------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEeccc
Confidence 001124799999999999999999999988999999999
Q ss_pred cchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
+||++.+++..... ....+++|+|+++++++|+| +++..+ +.|+.|||+++|++++.||+ ++.|.. | .+
T Consensus 346 ~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~--~~~~~~-~---~~ 415 (537)
T PRK13382 346 ATEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFREV---PTGEVGTIFVRNDTQFDGYT--SGSTKD-F---HD 415 (537)
T ss_pred ccccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCCC---CCCCeeEEEEEcCCcccCcc--ccchhh-c---cC
Confidence 99998766543321 23457999999999999999 556544 47899999999999999998 555543 4 45
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~ 634 (721)
|||+|||++++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.++.. .++|+|++.++.
T Consensus 416 --g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~- 491 (537)
T PRK13382 416 --GFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA- 491 (537)
T ss_pred --CCEeeCceEEEeCCCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCC-
Confidence 89999999999999999999999999996 69999999999999999999999999988653 488999876532
Q ss_pred HHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
. ...++++++++ .+|+.|++|+.+++++++ | +|++||++|++|++
T Consensus 492 ---------~---------------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~gK~~r~~L~~ 536 (537)
T PRK13382 492 ---------S---------------ATPETLKQHVR-DNLANYKVPRDIVVLDEL--P----RGATGKILRRELQA 536 (537)
T ss_pred ---------C---------------CCHHHHHHHHH-HhccCCCCCcEEEEeccC--C----CCCCCCCcHHhhCC
Confidence 0 01267888888 899999999999999887 6 99999999999864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=620.10 Aligned_cols=479 Identities=19% Similarity=0.243 Sum_probs=386.4
Q ss_pred CCHHHHHHHHHHh--CCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 82 STMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 82 ~tl~~~~~~~a~~--~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
.|+.++|.+++++ +||++|+.. +. .+||+||.++++++|++|.+.|+++|++|+
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~-------------~~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~ 59 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYA-------------AD-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVL 59 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEe-------------cC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3789999999886 799999963 22 599999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
|+++|+++|+++++||+++|++++|++|.++.+++.+++++++++++|++......+... . ++
T Consensus 60 i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~~--------- 122 (705)
T PRK06060 60 LCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-VA--------- 122 (705)
T ss_pred EECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-cc---------
Confidence 999999999999999999999999999999999999999999999999987654332110 0 00
Q ss_pred cCCccCCCCCceEeeHHHHHhcC-CCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH-hhCCCCCCC
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLG-KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~ 317 (721)
...++.... ...+.......++++|+|+|||||||.||||+++|+++.+.+.++. ..+ .+.++
T Consensus 123 --------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~ 187 (705)
T PRK06060 123 --------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPE 187 (705)
T ss_pred --------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCc
Confidence 001111000 0011111234578999999999999999999999999998877664 345 78899
Q ss_pred cEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHh
Q 004961 318 DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
|++++..|++|.+++.. ++.+|..|+++++.+...-. ..+...+.++++|+++++|+++..+.+....
T Consensus 188 d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~-------~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---- 256 (705)
T PRK06060 188 DTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTP-------EAAAILSARFGPSVLYGVPNFFARVIDSCSP---- 256 (705)
T ss_pred ceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCH-------HHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----
Confidence 99999999999988754 67789999999884421111 1112237899999999999999988653110
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceec
Q 004961 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~ 475 (721)
...+++|.+++||+++++++.+.+.+.+ +++++|
T Consensus 257 ---------------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~ 291 (705)
T PRK06060 257 ---------------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILD 291 (705)
T ss_pred ---------------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEe
Confidence 0114899999999999999999888877 589999
Q ss_pred ccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC
Q 004961 476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (721)
.||+||++.++........+.+++|+|+++++++|+| +++.. +++|+.|||||+|++++.||||+|+.+..
T Consensus 292 ~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~---~~~g~~GEl~i~g~~v~~GY~~~~~~~~~----- 362 (705)
T PRK06060 292 GIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTT---AGPGVEGDLWVRGPAIAKGYWNRPDSPVA----- 362 (705)
T ss_pred eeeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEccchhhhhhhCCCccccc-----
Confidence 9999999866544443444568999999999999999 55554 45889999999999999999999986532
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~ 632 (721)
.+ |||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++. ..++|+|++..+
T Consensus 363 ~~--~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 439 (705)
T PRK06060 363 NE--GWLDTRDRVCIDSDGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSG 439 (705)
T ss_pred CC--CcEECCeeEEECCCceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccc
Confidence 34 89999999999999999999999999998 5999999999999999999999999998765 368999987643
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
.. .+ ....++++++++ ++||.||+|..|++++++ | +|++||++|++|++.+
T Consensus 440 ~~--------~~--------------~~~~~~i~~~l~-~~L~~~~~P~~i~~v~~i--P----~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 440 AT--------ID--------------GSVMRDLHRGLL-NRLSAFKVPHRFAVVDRL--P----RTPNGKLVRGALRKQS 490 (705)
T ss_pred cC--------cC--------------hHHHHHHHHHHH-HhCCCCcCCcEEEEeecC--C----CCcchhhHHHHHHhhc
Confidence 20 00 112357888888 899999999999999998 6 9999999999999876
Q ss_pred H
Q 004961 713 K 713 (721)
Q Consensus 713 ~ 713 (721)
.
T Consensus 491 ~ 491 (705)
T PRK06060 491 P 491 (705)
T ss_pred c
Confidence 3
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=595.75 Aligned_cols=506 Identities=24% Similarity=0.310 Sum_probs=409.3
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004961 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 155 (721)
.+++...|+.+++.++++++|+++|++..+ ++ +++||.||.++++++|++|.+.|+++|
T Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~-----------~~~ty~el~~~~~~la~~L~~~g~~~g 75 (537)
T PLN02246 17 IYIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TG-----------RVYTYADVELLSRRVAAGLHKLGIRQG 75 (537)
T ss_pred CCCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CC-----------ceeeHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345666799999999999999999997521 23 379999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCC
Q 004961 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+++++|+++|+++++||+++|++++|+++.++.+++..+++.++++++|++......+...... +.+ .++.++..
T Consensus 76 d~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~ 153 (537)
T PLN02246 76 DVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDP 153 (537)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999998877666554321 222 34444322
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh----hC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LI 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~ 311 (721)
. .....+.++..... ...+.....++++++++|||||||.||||++||++++..+..... .+
T Consensus 154 ~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~ 219 (537)
T PLN02246 154 P-------------EGCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 219 (537)
T ss_pred C-------------CCceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc
Confidence 1 11234444433211 112223456799999999999999999999999999988765543 34
Q ss_pred CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
.+.++|++++.+|++|.+++.. ++.++..|+++++.+.... ..++..++++++|++.++|+++..|.+..
T Consensus 220 -~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 290 (537)
T PLN02246 220 -YFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEI--------GALLELIQRHKVTIAPFVPPIVLAIAKSP 290 (537)
T ss_pred -CCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCH--------HHHHHHHHHhCceEEEcchHHHHHHhcCc
Confidence 6889999999999999999866 5667999999998543211 12334499999999999999998876521
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~- 469 (721)
.. .....+++|.+++||+++++++.+.+.+.+
T Consensus 291 ~~-----------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~ 323 (537)
T PLN02246 291 VV-----------------------------------------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLP 323 (537)
T ss_pred cc-----------------------------------------------cccCccceeEEEEecCcCCHHHHHHHHHHcC
Confidence 10 001124899999999999999999999887
Q ss_pred CCceecccccchhcccccccC-----CCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCC
Q 004961 470 GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (721)
Q Consensus 470 g~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (721)
++.+++.||+||++.+++... ....+.+++|+|+++++++|+|++++..+ +.|+.|||+|+|++++.||+++
T Consensus 324 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~GY~~~ 400 (537)
T PLN02246 324 NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASL---PRNQPGEICIRGPQIMKGYLND 400 (537)
T ss_pred CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcC---CCCCceEEEEECCchhccccCC
Confidence 678999999999987654321 11234578999999999999996666554 4789999999999999999999
Q ss_pred CcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---c
Q 004961 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (721)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~ 621 (721)
++.|.+.|. .+ |||+|||+|+++++|+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. .
T Consensus 401 ~~~~~~~~~--~~--~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 475 (537)
T PLN02246 401 PEATANTID--KD--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGE 475 (537)
T ss_pred chhhhhccc--CC--CCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCc
Confidence 999998885 55 89999999999999999999999999997 5999999999999999999999999998765 3
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccc
Q 004961 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 701 (721)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~g 701 (721)
.++++|++.++. .. ..++|+++++ .+|+.|++|+.+++++++ | +|++|
T Consensus 476 ~~~~~v~~~~~~--------~~-----------------~~~~l~~~l~-~~l~~~~~p~~i~~~~~~--P----~t~~G 523 (537)
T PLN02246 476 VPVAFVVRSNGS--------EI-----------------TEDEIKQFVA-KQVVFYKRIHKVFFVDSI--P----KAPSG 523 (537)
T ss_pred eeEEEEEeCCCC--------CC-----------------CHHHHHHHHH-hhCcCccccceEEEeccC--C----CCCcc
Confidence 588888876532 00 0257888888 899999999999999988 6 99999
Q ss_pred ccChHHHHHHHHH
Q 004961 702 KIKREQLKAKFKD 714 (721)
Q Consensus 702 Ki~R~~l~~~~~~ 714 (721)
|++|++|++++.+
T Consensus 524 Ki~r~~L~~~~~~ 536 (537)
T PLN02246 524 KILRKDLRAKLAA 536 (537)
T ss_pred hhhHHHHHHHHhc
Confidence 9999999988753
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=610.32 Aligned_cols=514 Identities=19% Similarity=0.225 Sum_probs=390.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|+++++++|+++|+++.+.. ++. .+.++.+||+||.++++++|++|.+. +++||+|
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V 82 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV 82 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence 34468999999999999999999864200 001 12345799999999999999999987 8999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEe-cCCCC--HHHHHHHHHhcCceEEEECccchhHHHhhhccCCC--ceEEEEec
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIYFE 233 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~ii~~~ 233 (721)
+|+++|+++|++++|||+++|++++|+ ++..+ .+++.+++++++++++|++++..+.+.......+. ...++.++
T Consensus 83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (631)
T PRK07769 83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD 162 (631)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence 999999999999999999999999999 45554 68899999999999999998776655544333321 12233322
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
..... . ..........++++++|+|||||||.||||++||+++...+......+ +
T Consensus 163 ~~~~~-----------------------~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~ 217 (631)
T PRK07769 163 AVPDE-----------------------V-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-E 217 (631)
T ss_pred ccccc-----------------------c-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-C
Confidence 11000 0 000111234678999999999999999999999999999888887777 8
Q ss_pred CCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecc---eEEeechHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---TLMAAVPAIFDRVREGV 390 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~~ 390 (721)
+.++|++++++|++|++|+...+.+++.|+++++.++..+... +..+...+.++++ |++..+|+++..+....
T Consensus 218 ~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~ 293 (631)
T PRK07769 218 GQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRR----PGRWIRELARKPGGTGGTFSAAPNFAFEHAAAR 293 (631)
T ss_pred CCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhC----HHHHHHHHHhhccccCceEeeCCchHHHHHHhh
Confidence 8899999999999999999887788888999988654322111 1112223666665 78999999887665310
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~- 469 (721)
. ..... ......+++|.+++||+++++++.+.+.+.+
T Consensus 294 ~--~~~~~----------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 331 (631)
T PRK07769 294 G--LPKDG----------------------------------------EPPLDLSNVKGLLNGSEPVSPASMRKFNEAFA 331 (631)
T ss_pred c--cchhc----------------------------------------ccCcchhheeeEEeccCCCCHHHHHHHHHHHh
Confidence 0 00000 0001225899999999999999999888876
Q ss_pred --CC---ceecccccchhcccccccCCCC---------------------------CCCCccCCCcCcceEEEEecCCCC
Q 004961 470 --GA---PIGQAYGLTETCAGSTFSEWDD---------------------------PSVGRVGPPVPCCYIKLVSWDEGG 517 (721)
Q Consensus 470 --g~---~l~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~p~~~v~i~d~~~~~ 517 (721)
|+ .++++||+||++..++...... ...+++|+|+|+++++|+|.+++.
T Consensus 332 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~ 411 (631)
T PRK07769 332 PYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETAS 411 (631)
T ss_pred hcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCc
Confidence 33 5999999999987655433211 012589999999999999966665
Q ss_pred cccCCCCCCcceEEEccccccccccCCCcccccccccC-------------CCCcceEeeCcEEEEccCCeEEEEecCCC
Q 004961 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-------------ERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584 (721)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-------------~~g~gw~~TGDlg~~d~dG~l~i~GR~~d 584 (721)
.+ +.|+.|||||+||+++.|||++++.|++.|... .++.|||+|||+|+++ ||+|+|+||+||
T Consensus 412 ~~---~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d 487 (631)
T PRK07769 412 EL---PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKD 487 (631)
T ss_pred CC---CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEccccc
Confidence 54 488999999999999999999999999998520 0134899999999995 999999999999
Q ss_pred eEEcCCeeeecchHHHHHHhc-Ccccce--EEEEecCC-------------------C---ceEEEEEEcChHHHHHHHH
Q 004961 585 IVKLQHGEYISLGKVEAALIS-SDYVDN--IMIHADPF-------------------H---NYCVALVVPSHKALEKWAH 639 (721)
Q Consensus 585 ~ik~~~G~~v~~~eIE~~l~~-~p~V~~--~~V~g~~~-------------------~---~~~~A~vv~~~~~~~~~~~ 639 (721)
+||+ +|++|+|.|||++|.+ ||.|.+ |+|++.++ + +.++|+|++.++...
T Consensus 488 ~Ik~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~---- 562 (631)
T PRK07769 488 LVII-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK---- 562 (631)
T ss_pred EEEE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc----
Confidence 9997 6999999999999986 899998 99999887 2 248888887653200
Q ss_pred HhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCC-Cc-cccEEEeeCC--CCCCCCCccCcccccChHHHHHHHHH
Q 004961 640 EASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDK-FE-IPAKIKLMPE--PWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~-~P~~i~~~~~--~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
.-.++|.++++ ++|+. |+ .|+.+++++. + | +|++|||+|++|++.|.+
T Consensus 563 --------------------~~~~~l~~~~~-~~l~~~~~~~p~~~~~v~~~~l--P----~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 563 --------------------LDPQPIADDIR-AAIAVRHGVTVRDVLLVPAGSI--P----RTSSGKIARRACRAAYLD 614 (631)
T ss_pred --------------------ccHHHHHHHHH-HHHHHHcCCCccEEEEECCCcc--c----cCCCcHHHHHHHHHHHHc
Confidence 00256777777 67774 66 4888998873 5 6 999999999999998764
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=598.74 Aligned_cols=522 Identities=21% Similarity=0.236 Sum_probs=394.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|++.++++|+++|+++.+ +. .......++++||+||.++++++|++|.+.|+++||+|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~-----------~~--~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~ 72 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPG-----------GR--GADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM 72 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEecc-----------CC--CCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 578899999999999999998631 11 00001224479999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc--hhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.. ...+... ..+..+.++.++...
T Consensus 73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~--- 147 (552)
T PRK09274 73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL--- 147 (552)
T ss_pred eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc---
Confidence 999999999999999999999999999999999999999999999997531 1222111 112233333332210
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
.....+++++...............++++++|+|||||||.||||++||+++.+.+......+ ++.++|+
T Consensus 148 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 217 (552)
T PRK09274 148 ---------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEI 217 (552)
T ss_pred ---------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCce
Confidence 011123444432211122222345678999999999999999999999999999988888887 8999999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
.++.+|++|.++ +..|+++++.+..... .....+..++..++++++|+++++|++++.+.+.....
T Consensus 218 ~~~~~pl~~~~~-------~~~g~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------ 283 (552)
T PRK09274 218 DLPTFPLFALFG-------PALGMTSVIPDMDPTR-PATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN------ 283 (552)
T ss_pred eeeccCHHHhhh-------hhhCCeEEecCccccc-ccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc------
Confidence 999999998654 3457777763211000 00001233445599999999999999999987642110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh--CCceeccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--GAPIGQAY 477 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~--g~~l~~~Y 477 (721)
....+++|.+++||+++++++.+.+++.+ |+++++.|
T Consensus 284 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y 322 (552)
T PRK09274 284 -----------------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY 322 (552)
T ss_pred -----------------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccc
Confidence 01225899999999999999999999988 46999999
Q ss_pred ccchhcccccccCCC----------CCCCCccCCCcCcceEEEEecCCCC-----cccCCCCCCcceEEEcccccccccc
Q 004961 478 GLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGG-----YKTSDKPMPRGEIVVGGFNVTAGYF 542 (721)
Q Consensus 478 G~TE~~~~~~~~~~~----------~~~~~~vG~p~p~~~v~i~d~~~~~-----~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (721)
|+||++.+++..... .....++|+|+|+++++|+|+.++. ....++.|+.|||+|+|++++.|||
T Consensus 323 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~ 402 (552)
T PRK09274 323 GATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYY 402 (552)
T ss_pred cccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCccccccc
Confidence 999998765543211 1122479999999999999943211 0112568899999999999999999
Q ss_pred CCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc-
Q 004961 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN- 621 (721)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~- 621 (721)
++|+.|...|..+.+|..||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.
T Consensus 403 ~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~ 481 (552)
T PRK09274 403 NRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGA 481 (552)
T ss_pred CChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCC
Confidence 9999999887533442239999999999999999999999999997 59999999999999999999999999987653
Q ss_pred -eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC--
Q 004961 622 -YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT-- 698 (721)
Q Consensus 622 -~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t-- 698 (721)
.++++|++.++.. . ..+++.+++++.++ .++.++.|+.+++++++ | +|
T Consensus 482 ~~~~~~v~~~~~~~----------~-----------~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~l--P----~t~~ 532 (552)
T PRK09274 482 QRPVLCVELEPGVA----------C-----------SKSALYQELRALAA--AHPHTAGIERFLIHPSF--P----VDIR 532 (552)
T ss_pred ceEEEEEEccCccc----------c-----------chHHHhhhhHHHHH--hcCCCcceeEEeccCCC--C----cccc
Confidence 5888888775420 0 01234566777665 44677889999999997 6 77
Q ss_pred cccccChHHHHHHHHHHH
Q 004961 699 AALKIKREQLKAKFKDDL 716 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i 716 (721)
++|||+|++|++++.+.+
T Consensus 533 ~~GKi~r~~L~~~~~~~~ 550 (552)
T PRK09274 533 HNAKIFREKLAVWAAKQL 550 (552)
T ss_pred ccccccHHHHHHHHHHhh
Confidence 799999999999887764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-69 Score=710.39 Aligned_cols=569 Identities=21% Similarity=0.260 Sum_probs=445.1
Q ss_pred CCCcccccccccCCCccceeeheeeecc----------------ceeeeehhccccccccccCCCCCCCCCCccccccCC
Q 004961 6 GSSFDSELLTEKGSGIYGIVGAAIVALL----------------IPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQ 69 (721)
Q Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~r~~~~~~~ 69 (721)
...||..+.....-+++.+...|-..++ ..+. +. |... +.+++++.+.+++.+...++
T Consensus 1491 ~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~-~~--p~~~---~~~l~~~~~~~~~~~~~~~~ 1564 (3956)
T PRK12467 1491 TAQFDLTLDTYESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLV-AD--PERR---LGELDLLDEAERRQILEGWN 1564 (3956)
T ss_pred ccccceEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHh-hC--ccCc---eeeccccchHHhhhhHHhhc
Confidence 3456666655444444555555544444 2212 23 6666 88899999999888776444
Q ss_pred CCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh
Q 004961 70 IPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN 149 (721)
Q Consensus 70 ~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~ 149 (721)
....+.+...+++++|+++++++|+++|+++ ++. .+||+||.++++++|++|.+
T Consensus 1565 ---~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~ 1618 (3956)
T PRK12467 1565 ---ATHTGYPLARLVHQLIEDQAAATPEAVALVF------------GEQ-----------ELTYGELNRRANRLAHRLIA 1618 (3956)
T ss_pred ---CCccCCCccccHHHHHHHHHHhCCCCeEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHH
Confidence 1223334457999999999999999999986 232 69999999999999999999
Q ss_pred CCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEE
Q 004961 150 FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNV 229 (721)
Q Consensus 150 ~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i 229 (721)
+|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++......+.. ....+ +
T Consensus 1619 ~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~~~~~-~ 1693 (3956)
T PRK12467 1619 LGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL----PDGLR-S 1693 (3956)
T ss_pred cCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc----ccCCc-E
Confidence 999999999999999999999999999999999999999999999999999999999998765433211 11111 2
Q ss_pred EEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh
Q 004961 230 IYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (721)
Q Consensus 230 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (721)
+.++... ++.. ......+.....++++|||+|||||||.||||+++|+++++.+.+...
T Consensus 1694 ~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~ 1752 (3956)
T PRK12467 1694 LVLDQED--------------------DWLE-GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQE 1752 (3956)
T ss_pred EEecccc--------------------chhc-cCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHH
Confidence 2222110 0000 001111223456899999999999999999999999999999999888
Q ss_pred hCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
.+ +++++|+++++.|++|+++++.++.+|+.|+++++.++....+. ..+...++++++|++.++|++++.+.+.
T Consensus 1753 ~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467 1753 AY-QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDP-----EQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred hc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCH-----HHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence 88 89999999999999999999889999999999999654433222 2233449999999999999999988753
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... ...++||.+++|||++++++.+.|.+.+
T Consensus 1827 ~~~~------------------------------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~ 1858 (3956)
T PRK12467 1827 DEQV------------------------------------------------EHPLSLRRVVCGGEALEVEALRPWLERL 1858 (3956)
T ss_pred cccc------------------------------------------------ccCCCceEEEEccccCCHHHHHHHHHhC
Confidence 1000 0114899999999999999988877665
Q ss_pred -CCceecccccchhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 470 -GAPIGQAYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 470 -g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
+..++|.||+||+++.++..... .....++|+|++|++++|+| ++++. +++|..|||+|+|+++++||+|
T Consensus 1859 ~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~---vp~G~~GEl~i~G~~v~~GYl~ 1934 (3956)
T PRK12467 1859 PDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNP---VPIGVAGELYLGGVGLARGYLN 1934 (3956)
T ss_pred CCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCC---CCCCCceEEEeccccccccccC
Confidence 57899999999999877654322 12346899999999999998 56654 4588999999999999999999
Q ss_pred CCcccccccccCCC---CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC-
Q 004961 544 NPGKTSEVYKVDER---GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF- 619 (721)
Q Consensus 544 ~~~~t~~~f~~~~~---g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~- 619 (721)
+|+.|+++|..++. |.+||+|||+|++++||.|+|+||+||+||++ |+||+|.|||++|.+||+|.+|+|++.++
T Consensus 1935 ~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~-G~rIel~eIE~~l~~~p~V~~a~vv~~~~~ 2013 (3956)
T PRK12467 1935 RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLREQGGVREAVVIAQDGA 2013 (3956)
T ss_pred ChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeC-eEEechHHHHHHHHhCCCcceEEEEEecCC
Confidence 99999999975432 45799999999999999999999999999985 99999999999999999999999998763
Q ss_pred -CceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 620 -HNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 620 -~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
.+.++|+|++..+... . .........++|+++++ ++||.||+|+.+++++++ | +|
T Consensus 2014 ~~~~lva~vv~~~~~~~--------~---------~~~~~~~~~~~l~~~l~-~~Lp~ymvP~~~~~l~~l--P----~t 2069 (3956)
T PRK12467 2014 NGKQLVAYVVPTDPGLV--------D---------DDEAQVALRAILKNHLK-ASLPEYMVPAHLVFLARM--P----LT 2069 (3956)
T ss_pred CCcEEEEEEEecCcccc--------c---------ccccccccHHHHHHHHH-hhCchhhCchhhhhhhcC--C----CC
Confidence 3579999998654210 0 00011123467889998 899999999999999998 6 99
Q ss_pred cccccChHHHHHHHHHH
Q 004961 699 AALKIKREQLKAKFKDD 715 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~ 715 (721)
++||+||++|.+.+...
T Consensus 2070 ~~GKidr~~L~~~~~~~ 2086 (3956)
T PRK12467 2070 PNGKLDRKALPAPDASE 2086 (3956)
T ss_pred CCCCcchhhCCCCcccc
Confidence 99999999998655443
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-68 Score=601.29 Aligned_cols=500 Identities=26% Similarity=0.341 Sum_probs=393.2
Q ss_pred HHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcC
Q 004961 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAE 163 (721)
Q Consensus 85 ~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai~~~ 163 (721)
..+|.+ +++|+++|+++.. .+ ..+||+||.++++++|++|.+ .|+++||+|+|+++
T Consensus 44 ~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~ 100 (560)
T PLN02574 44 SFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP 100 (560)
T ss_pred HHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 344544 6799999998521 12 258999999999999999999 99999999999999
Q ss_pred CcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCc
Q 004961 164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243 (721)
Q Consensus 164 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 243 (721)
|+++|++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+... ... ++.++......
T Consensus 101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~---- 170 (560)
T PLN02574 101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD---- 170 (560)
T ss_pred CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc----
Confidence 99999999999999999999999999999999999999999999998766555432 111 22221110000
Q ss_pred cCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh----CCCCCCCcE
Q 004961 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL----IPNPGRSDV 319 (721)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~d~ 319 (721)
........++++...... ........++++++|+|||||||.||||++||+++.+.+..+... +.....+++
T Consensus 171 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (560)
T PLN02574 171 ---SKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNV 246 (560)
T ss_pred ---cCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcE
Confidence 000112345555443221 112233467899999999999999999999999999887766432 212346789
Q ss_pred EEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+++.+|++|.+++.. ++.++..|+++++.+... ...++..++++++|+++++|+++..+.+....
T Consensus 247 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------ 312 (560)
T PLN02574 247 YLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFD--------ASDMVKVIDRFKVTHFPVVPPILMALTKKAKG------ 312 (560)
T ss_pred EEEecchHHHHHHHHHHHHHHhcCCEEEEecCCC--------HHHHHHHHHHcCCeEEecCCHHHHHHHhCccc------
Confidence 999999999999866 456678899988843221 11233339999999999999999998763110
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceeccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~Y 477 (721)
......+++|.+++||+++++++.+.+.+.+ ++++++.|
T Consensus 313 ----------------------------------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~Y 352 (560)
T PLN02574 313 ----------------------------------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGY 352 (560)
T ss_pred ----------------------------------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecc
Confidence 0001125899999999999999998888777 78999999
Q ss_pred ccchhcccccccCC--CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC
Q 004961 478 GLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 478 G~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (721)
|+||++.+++.... .....+++|+|+|+++++|+|++++..+ ++|+.|||||+|++++.||+++++.|++.|.
T Consensus 353 G~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~---~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~-- 427 (560)
T PLN02574 353 GMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKATQSTID-- 427 (560)
T ss_pred cccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC---CCCCCeEEEEECcchhhhhcCChhHhhhhcc--
Confidence 99999865543222 2234589999999999999997777654 4789999999999999999999999999885
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~ 632 (721)
.+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++++|+++++
T Consensus 428 ~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 504 (560)
T PLN02574 428 KD--GWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQG 504 (560)
T ss_pred CC--CCcccceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCC
Confidence 56 89999999999999999999999999997 5999999999999999999999999998765 358889887643
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
. ..+ .++|.++++ ++|++|++|+.+++++++ | +|++||++|++|++++
T Consensus 505 ~--------~~~-----------------~~~l~~~~~-~~l~~~~~p~~v~~v~~i--P----~t~~GKi~r~~L~~~~ 552 (560)
T PLN02574 505 S--------TLS-----------------QEAVINYVA-KQVAPYKKVRKVVFVQSI--P----KSPAGKILRRELKRSL 552 (560)
T ss_pred C--------CCC-----------------HHHHHHHHH-HhccCcccCcEEEEeecc--C----CCCcchhhHHHHHHHH
Confidence 2 000 257888888 899999999999999988 6 9999999999999988
Q ss_pred HHH
Q 004961 713 KDD 715 (721)
Q Consensus 713 ~~~ 715 (721)
.+.
T Consensus 553 ~~~ 555 (560)
T PLN02574 553 TNS 555 (560)
T ss_pred hhc
Confidence 653
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=595.51 Aligned_cols=509 Identities=23% Similarity=0.287 Sum_probs=396.9
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004961 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 157 (721)
-++..|+.++|+++++++|+++|+++. ++. +.+||+||.++++++|++|.+.|+++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~ 70 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT-----------ADR----------IAISYRDLARLVDDLAGQLTRSGLLPGDR 70 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec-----------CCC----------CcccHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 355689999999999999999999863 221 36999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCC
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (721)
|+|+++|+++++++++||+++|++++|+++.++.+++.++|++++++.+|++............ ......+.+.....
T Consensus 71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 148 (534)
T PRK05852 71 VALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGDSG 148 (534)
T ss_pred EEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999998653321111000 00111111111100
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCC
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (721)
.. .......+.... .............+|.++|+|||||||.||||+++|+++.+.+......+ .+.++
T Consensus 149 ~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~ 217 (534)
T PRK05852 149 PS--------GGTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPR 217 (534)
T ss_pred cc--------cccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCc
Confidence 00 000000000000 00000011122357889999999999999999999999999998888888 88999
Q ss_pred cEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHh
Q 004961 318 DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
|++++.+|++|.+++.. ++.++..|+++++.....+ + +..++..++++++|+++++|+++..+.+.......
T Consensus 218 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~- 290 (534)
T PRK05852 218 DATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF-S-----AHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS- 290 (534)
T ss_pred ceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc-C-----HHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc-
Confidence 99999999999999876 6667888998887332111 1 11233349999999999999999998764211000
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecc
Q 004961 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~ 476 (721)
....+++|.++++|+++++++.+.+.+.+++++++.
T Consensus 291 --------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~ 326 (534)
T PRK05852 291 --------------------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCA 326 (534)
T ss_pred --------------------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhc
Confidence 001258999999999999999999999999999999
Q ss_pred cccchhcccccccCCC--------CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 477 YGLTETCAGSTFSEWD--------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 477 YG~TE~~~~~~~~~~~--------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
||+||++..++..... ....+.+|+ .++++++|+| ++++.+ ++|+.|||+|+|++++.||+++++.|
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~---~~g~~Gel~v~g~~v~~gY~~~~~~t 401 (534)
T PRK05852 327 FGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPL---PAGAVGEVWLRGTTVVRGYLGDPTIT 401 (534)
T ss_pred cCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCC---CCCCceEEEEecCcccchhcCCcccc
Confidence 9999998766543321 112244454 6999999999 556544 58899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A 625 (721)
.+.| .+ |||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.++|+|.+|+|++.+++. .+++
T Consensus 402 ~~~~---~~--g~~~TGD~~~~d~dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~ 475 (534)
T PRK05852 402 AANF---TD--GWLRTGDLGSLSAAGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAA 475 (534)
T ss_pred hhhh---cC--CCcccCceEEEeCCCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEE
Confidence 9998 66 89999999999999999999999999996 69999999999999999999999999998753 5888
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++++.. +.+ .++|.++++ ++||.|++|+.|++++++ | +|++||++|
T Consensus 476 ~vv~~~~~--------~~~-----------------~~~i~~~~~-~~l~~~~~P~~i~~v~~i--P----~t~~GKi~r 523 (534)
T PRK05852 476 VIVPRESA--------PPT-----------------AEELVQFCR-ERLAAFEIPASFQEASGL--P----HTAKGSLDR 523 (534)
T ss_pred EEEECCCC--------CCC-----------------HHHHHHHHH-HhcccccCCeEEEEhhhc--C----CCCCccccH
Confidence 88875432 000 257888888 889999999999999998 6 999999999
Q ss_pred HHHHHHHHH
Q 004961 706 EQLKAKFKD 714 (721)
Q Consensus 706 ~~l~~~~~~ 714 (721)
++|+++|..
T Consensus 524 ~~L~~~~~~ 532 (534)
T PRK05852 524 RAVAEQFGH 532 (534)
T ss_pred HHHHHHhcc
Confidence 999998864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=718.49 Aligned_cols=527 Identities=21% Similarity=0.273 Sum_probs=428.3
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|... +..++++...+++.+...++ ....+++...+++++|+++++++||++|+++. ++
T Consensus 3687 ~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~-----------~~----- 3744 (4334)
T PRK05691 3687 FHGD---LSELPLLGEQERDFLLDGCN---RSERDYPLEQSYVRLFEAQVAAHPQRIAASCL-----------DQ----- 3744 (4334)
T ss_pred cCCC---hhhcCCCCHHHHHHHHHhhC---CccCCCccccCHHHHHHHHHHhCCCceEEEcC-----------CC-----
Confidence 6666 88899988888776665444 22344455679999999999999999999863 33
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|+.|.++|+++|++|+|++++++++++++|||+++|+++|||+|.++.+++.+++++++
T Consensus 3745 -------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~ 3817 (4334)
T PRK05691 3745 -------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSR 3817 (4334)
T ss_pred -------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCc--eEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEE
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVI 280 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 280 (721)
+++++++.........+...+... ..++..+ +................++++|||
T Consensus 3818 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ayv 3874 (4334)
T PRK05691 3818 TPVLVCSAACREQARALLDELGCANRPRLLVWE-----------------------EVQAGEVASHNPGIYSGPDNLAYV 3874 (4334)
T ss_pred CCEEEecCcccchhhhhhcccccccccceeeec-----------------------ccccccccccCCCCCCCCCceEEE
Confidence 999999987655444333322211 1111111 111101111112234578999999
Q ss_pred EeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhh
Q 004961 281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKI 360 (721)
Q Consensus 281 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 360 (721)
+|||||||.||||+++|+|+++.+.+....+ .++++|++++..|++|+.+++.++.+|+.|+++++.+.....+.
T Consensus 3875 i~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~---- 3949 (4334)
T PRK05691 3875 IYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDP---- 3949 (4334)
T ss_pred EECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCH----
Confidence 9999999999999999999999999988888 99999999999999999999999999999999998554433222
Q ss_pred ccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHH
Q 004961 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440 (721)
Q Consensus 361 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (721)
..+...++++++|++.++|++++.+......
T Consensus 3950 -~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------------------------ 3980 (4334)
T PRK05691 3950 -QGLLAHVQAQGITVLESVPSLIQGMLAEDRQ------------------------------------------------ 3980 (4334)
T ss_pred -HHHHHHHHHcCCeEEEeCHHHHHHHHhhccc------------------------------------------------
Confidence 2233449999999999999999987642100
Q ss_pred HHhCCcEEEEEecCCCCCHHHHHHHHHh-hCCceecccccchhcccccccCCCC----CCCCccCCCcCcceEEEEecCC
Q 004961 441 AVLGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAYGLTETCAGSTFSEWDD----PSVGRVGPPVPCCYIKLVSWDE 515 (721)
Q Consensus 441 ~~~~~~lr~v~~gG~~l~~~~~~~~~~~-~g~~l~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p~p~~~v~i~d~~~ 515 (721)
..++||.+++|||++++++.+.|.+. .+++++|.||+|||+..+++..... ....++|+|++|+.++|+| +.
T Consensus 3981 --~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~ 4057 (4334)
T PRK05691 3981 --ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EA 4057 (4334)
T ss_pred --cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CC
Confidence 01489999999999999998887665 4789999999999998776543322 1235799999999999998 55
Q ss_pred CCcccCCCCCCcceEEEccccccccccCCCcccccccccCC---CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCee
Q 004961 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (721)
Q Consensus 516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~ 592 (721)
+.. ++.|.+|||+|+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+|++||++ |+
T Consensus 4058 ~~~---~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~ 4133 (4334)
T PRK05691 4058 LEL---VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR-GY 4133 (4334)
T ss_pred CCC---CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec-eE
Confidence 554 45889999999999999999999999999997543 356899999999999999999999999999995 99
Q ss_pred eecchHHHHHHhcCcccceEEEEecC--CCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHH
Q 004961 593 YISLGKVEAALISSDYVDNIMIHADP--FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAK 670 (721)
Q Consensus 593 ~v~~~eIE~~l~~~p~V~~~~V~g~~--~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 670 (721)
||++.|||++|.++|+|.+|+|+... ..+.++|+|++...... .....++|+++++
T Consensus 4134 riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~----------------------~~~~~~~l~~~l~ 4191 (4334)
T PRK05691 4134 RIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLA----------------------QGALLERIKQRLR 4191 (4334)
T ss_pred EecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCccccc----------------------chHHHHHHHHHHH
Confidence 99999999999999999999887543 23579999998653210 0123467888888
Q ss_pred HCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 671 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 671 ~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
++||.||+|+.++.++++ | +|++|||||++|.+.
T Consensus 4192 -~~Lp~ymvP~~~~~~~~l--P----~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4192 -AELPDYMVPLHWLWLDRL--P----LNANGKLDRKALPAL 4225 (4334)
T ss_pred -hhCChhhcCcceeecccC--C----CCCCCcccHhhcCCC
Confidence 999999999999999998 6 999999999999764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=614.71 Aligned_cols=493 Identities=19% Similarity=0.241 Sum_probs=382.3
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
...|+.++|.++++++|+ ++|+.. ++ ++++||+||.++++++|++|.+. +++||+|
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~------------~~----------~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V 258 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIED------------VN----------FTPDSYRKLLKKTLFVGRILEKY-SVEGERI 258 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEc------------CC----------CCcccHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence 347899999999999998 577752 11 13699999999999999999987 5999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHH--hhhccCCCceEEEEecCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS--AVSSSLKTIKNVIYFENDG 236 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~ 236 (721)
+|+++|++||++++|||+++|++++|+|+.++++++.+++++++++++|++.+..+... .....++.+..+ .++...
T Consensus 259 al~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 337 (718)
T PRK08043 259 GLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLK 337 (718)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhh
Confidence 99999999999999999999999999999999999999999999999999876543211 111112222222 222110
Q ss_pred CCccCCccCCCCCceEeeHHHH--H-hcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC
Q 004961 237 SEKDSGVSGGISNWTVSSFSEV--E-KLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
. . ..+.+. . ..............++|+++|+|||||||.||||++||+|+.+.+......+ +
T Consensus 338 ~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~ 402 (718)
T PRK08043 338 D-D-------------VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-D 402 (718)
T ss_pred h-h-------------cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-C
Confidence 0 0 001110 0 0000001111234679999999999999999999999999999988887777 8
Q ss_pred CCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 392 (721)
++++|++++.+|++|.+++.. ++.++..|+++++.+.... ...+...+.++++|+++++|+++..+.+..
T Consensus 403 ~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~-------~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-- 473 (718)
T PRK08043 403 FTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLH-------YRIVPELVYDRNCTVLFGTSTFLGNYARFA-- 473 (718)
T ss_pred CCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCccc-------HHHHHHHHHhcCCeEEEchHHHHHHhhhhc--
Confidence 999999999999999999865 6778999999987432110 011122388999999999999987664310
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCc
Q 004961 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472 (721)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~ 472 (721)
.....++||.+++||+++++++.+.+++.+|++
T Consensus 474 -----------------------------------------------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~ 506 (718)
T PRK08043 474 -----------------------------------------------NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLR 506 (718)
T ss_pred -----------------------------------------------CcccccceEEEEEeCccCCHHHHHHHHHHcCCC
Confidence 000125899999999999999999999889999
Q ss_pred eecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC--CCccc--
Q 004961 473 IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN--NPGKT-- 548 (721)
Q Consensus 473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~--~~~~t-- 548 (721)
++++||+||++.+++...+...+.+++|+|+||++++|+|. ++ .++.|||+++|++++.|||+ +++.+
T Consensus 507 l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~-~~-------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~ 578 (718)
T PRK08043 507 ILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSV-PG-------IEQGGRLQLKGPNIMNGYLRVEKPGVLEV 578 (718)
T ss_pred eecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecC-CC-------CCCceEEEEecCCccccccCCCCcccccc
Confidence 99999999998776655444446689999999999999983 32 23569999999999999998 45532
Q ss_pred -----ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc--
Q 004961 549 -----SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN-- 621 (721)
Q Consensus 549 -----~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~-- 621 (721)
.+.+. .+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.+++.
T Consensus 579 ~~~~~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~g 653 (718)
T PRK08043 579 PTAENARGEM--ER--GWYDTGDIVRFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKG 653 (718)
T ss_pred cccccccccc--cC--CeEecCCEEEEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCC
Confidence 22221 34 89999999999999999999999999997 59999999999999999989888899887654
Q ss_pred -eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 622 -YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 622 -~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
.+++++.... . + .+++++++++..|+.|++|+.+++++++ | +|++
T Consensus 654 e~~v~~~~~~~-~----------~-----------------~~~l~~~~~~~~l~~~~vP~~i~~v~~l--P----~t~~ 699 (718)
T PRK08043 654 EALVLFTTDSE-L----------T-----------------REKLQQYAREHGVPELAVPRDIRYLKQL--P----LLGS 699 (718)
T ss_pred ceEEEEEcCcc-c----------C-----------------HHHHHHHHHhcCCCcccCCceEEEeccc--C----cCCC
Confidence 4666653211 0 0 2568888883449999999999999998 6 9999
Q ss_pred cccChHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKD 714 (721)
Q Consensus 701 gKi~R~~l~~~~~~ 714 (721)
||++|++|++++.+
T Consensus 700 GKi~r~~L~~~~~~ 713 (718)
T PRK08043 700 GKPDFVTLKSMVDE 713 (718)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999988765
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=663.30 Aligned_cols=519 Identities=20% Similarity=0.263 Sum_probs=418.4
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|..+ +++++++...+++.+..++. ...+++. .|+.++|+++++++|+++|+++ ++.
T Consensus 427 p~~~---i~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~l~~~~~~~~~~~p~~~Al~~------------~~~---- 482 (1296)
T PRK10252 427 PALL---CGDVDILLPGEYAQLAQVNA----TAVEIPE-TTLSALVAQQAAKTPDAPALAD------------ARY---- 482 (1296)
T ss_pred CCCC---hhhcCCCCHHHHHHHHHhcC----CCCCCCc-CCHHHHHHHHHHhCCCCeEEEc------------CCC----
Confidence 6666 78888888777766433333 2233343 6899999999999999999985 222
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++
T Consensus 483 -------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~ 555 (1296)
T PRK10252 483 -------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDAR 555 (1296)
T ss_pred -------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
+++++++......+.. .+.+.. +. +++.... ..........++++|+|+|
T Consensus 556 ~~~~i~~~~~~~~~~~----~~~~~~-~~-----------------------~~~~~~~--~~~~~~~~~~~~~~a~i~~ 605 (1296)
T PRK10252 556 PSLLITTADQLPRFAD----VPDLTS-LC-----------------------YNAPLAP--QGAAPLQLSQPHHTAYIIF 605 (1296)
T ss_pred CCEEEECcchhhhccc----CCCcee-ee-----------------------ccccccc--ccCCCCCCCCCCCeEEEEE
Confidence 9999999876543321 111111 11 1110000 0001112236789999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++++.+.+....+ ++.++|++++.+|++|+.+++.++.+|+.|+++++.++....+. .
T Consensus 606 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~ 679 (1296)
T PRK10252 606 TSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDP-----L 679 (1296)
T ss_pred CCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCH-----H
Confidence 99999999999999999999999998888 99999999999999999999889999999999999654433332 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...++++++|++.++|++++.+.+....... ..
T Consensus 680 ~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------------------------------~~ 714 (1296)
T PRK10252 680 AMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------------------------------RQ 714 (1296)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------------------------------cc
Confidence 233348999999999999999988753211000 00
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC-------CCCCccCCCcCcceEEEEecCC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-------PSVGRVGPPVPCCYIKLVSWDE 515 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~vG~p~p~~~v~i~d~~~ 515 (721)
..+++|.+++||+++++++.+.+.+.+|++++|.||+||++..++...... ....++|+|+++++++|+| ++
T Consensus 715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~ 793 (1296)
T PRK10252 715 SCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-AR 793 (1296)
T ss_pred cCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CC
Confidence 114899999999999999999998888999999999999987766543321 2346899999999999999 66
Q ss_pred CCcccCCCCCCcceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeee
Q 004961 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (721)
Q Consensus 516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~ 593 (721)
++.+ ++|..|||+|+|+++++||+++|+.|++.|..++ ++.+||+|||+|++++||.|+|+||+||+||+ +|+|
T Consensus 794 ~~~~---~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~-~G~r 869 (1296)
T PRK10252 794 MRPV---PPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKI-RGQR 869 (1296)
T ss_pred CCCC---CCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEE-eeEE
Confidence 6554 5889999999999999999999999999997432 24579999999999999999999999999998 5999
Q ss_pred ecchHHHHHHhcCcccceEEEEec---------CCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHH
Q 004961 594 ISLGKVEAALISSDYVDNIMIHAD---------PFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664 (721)
Q Consensus 594 v~~~eIE~~l~~~p~V~~~~V~g~---------~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (721)
|+|.|||++|.+||+|.+++|++. .+...++|+|++..+. ..+ .++
T Consensus 870 i~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~----------~~~---------------~~~ 924 (1296)
T PRK10252 870 IELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL----------PLD---------------TSA 924 (1296)
T ss_pred ecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC----------CCC---------------HHH
Confidence 999999999999999999987653 1123699999986432 000 257
Q ss_pred HHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 665 LSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 665 l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
|+++++ .+||.||+|..++.++++ | +|++|||+|++|++
T Consensus 925 l~~~l~-~~Lp~~~~P~~~~~~~~l--P----~t~~GKidr~~L~~ 963 (1296)
T PRK10252 925 LQAQLR-ERLPPHMVPVVLLQLDQL--P----LSANGKLDRKALPL 963 (1296)
T ss_pred HHHHHH-hhCchhcCCcEEEEecCC--C----CCCCcChhHHhcCC
Confidence 888888 899999999999999988 6 99999999999965
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-67 Score=593.11 Aligned_cols=517 Identities=23% Similarity=0.294 Sum_probs=394.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|++.++++|+++|+++ ++. .+||+||.++++++|++|.++|+++||+|+|+
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~ 70 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL 70 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5799999999999999999986 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCc-----eEEEEecCCC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-----KNVIYFENDG 236 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~ii~~~~~~ 236 (721)
++|+++|++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.++...++.. ..++.++...
T Consensus 71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (579)
T PLN03102 71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID 150 (579)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999988776666554433221 1234443221
Q ss_pred CCccCCccCCCCCceEeeHHHHHhcCCCCCCC----CCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCC
Q 004961 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD----PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 312 (721)
... .......+++++.......... .....++++++|+|||||||.||||++||+++...........
T Consensus 151 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~- 222 (579)
T PLN03102 151 FPK-------RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW- 222 (579)
T ss_pred ccc-------CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-
Confidence 110 0011224555555433221111 1224578999999999999999999999999765544443344
Q ss_pred CCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 392 (721)
.+...++++..+|++|.+++...+.++..|+++++..... ...++..|+++++|++.++|+++..|.+....
T Consensus 223 ~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 294 (579)
T PLN03102 223 EMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT--------APEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294 (579)
T ss_pred CCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCC--------hHHHHHHHHHcCCeEEEeChHHHHHHHhCccc
Confidence 6677889999999999999887777888899887743211 11133449999999999999999998753110
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCc
Q 004961 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472 (721)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~ 472 (721)
... ..++++.+++||+++++.+.++++. +|++
T Consensus 295 ~~~-----------------------------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~ 326 (579)
T PLN03102 295 DLS-----------------------------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQ 326 (579)
T ss_pred ccC-----------------------------------------------CcccceEEEECCCCCCHHHHHHHHH-cCCe
Confidence 000 0135778999999999999988876 5999
Q ss_pred eecccccchhcccccccCCCC--------------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccc
Q 004961 473 IGQAYGLTETCAGSTFSEWDD--------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538 (721)
Q Consensus 473 l~~~YG~TE~~~~~~~~~~~~--------------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~ 538 (721)
+++.||+||+++.++...... ...+..+.|+++ +.++|.+.+..++ .+.++.|||+|+|++++
T Consensus 327 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~-~~~~~~GEl~v~g~~~~ 403 (579)
T PLN03102 327 VMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVP-RDGKTMGEIVIKGSSIM 403 (579)
T ss_pred EEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccC-CCCCCceEEEEECcchh
Confidence 999999999986543321100 112344445554 4556644444433 22246799999999999
Q ss_pred ccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecC
Q 004961 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618 (721)
Q Consensus 539 ~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~ 618 (721)
.|||++|+.|.+.| .+ |||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+++|++.+
T Consensus 404 ~GY~~~~~~t~~~f---~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 477 (579)
T PLN03102 404 KGYLKNPKATSEAF---KH--GWLNTGDVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMP 477 (579)
T ss_pred hhhcCChhhhHhhh---cc--CceecCceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEecc
Confidence 99999999999999 66 89999999999999999999999999996 69999999999999999999999999998
Q ss_pred CC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCC
Q 004961 619 FH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAG 695 (721)
Q Consensus 619 ~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~ 695 (721)
++ +.++|+|++.++.... .+...+ .. .-..+++++++ .+|++|++|..+++++++ |
T Consensus 478 ~~~~~~~~~a~v~~~~~~~~~--------~~~~~~------~~-~~~~~l~~~~~-~~L~~~~~P~~i~~~~~~--P--- 536 (579)
T PLN03102 478 HPTWGETPCAFVVLEKGETTK--------EDRVDK------LV-TRERDLIEYCR-ENLPHFMCPRKVVFLQEL--P--- 536 (579)
T ss_pred CccccceeEEEEEecCccccc--------cccccc------cc-ccHHHHHHHHH-hhcccccCCeEEEEcccC--C---
Confidence 75 3689999887543100 000000 00 01257888998 889999999999999988 6
Q ss_pred ccCcccccChHHHHHHHHHHH
Q 004961 696 LVTAALKIKREQLKAKFKDDL 716 (721)
Q Consensus 696 ~~t~~gKi~R~~l~~~~~~~i 716 (721)
+|++||++|++|++++++.+
T Consensus 537 -~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 537 -KNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred -CCCcccccHHHHHHHHHHhh
Confidence 99999999999999987644
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-68 Score=715.40 Aligned_cols=523 Identities=21% Similarity=0.259 Sum_probs=425.8
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|... +.+++++...++..+...++ .....++...+++++|+++++++|+++|+++ ++
T Consensus 478 p~~~---i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~------------~~----- 534 (5163)
T PRK12316 478 PQAR---VDELPMLDAEERGQLVEGWN---ATAAEYPLQRGVHRLFEEQVERTPEAPALAF------------GE----- 534 (5163)
T ss_pred cccc---cccCCCCCHHHHHHHHHHhc---CccccCCCCCCHHHHHHHHHHHCCCCeEEEe------------CC-----
Confidence 6666 88899988888876654433 1223334457999999999999999999985 22
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
+.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 535 ------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~ 608 (5163)
T PRK12316 535 ------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSG 608 (5163)
T ss_pred ------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCC
Confidence 26999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++......+.. .... .++.++... .... ............++++|+|+|
T Consensus 609 ~~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~a~ii~ 662 (5163)
T PRK12316 609 VQLLLSQSHLGRKLPL----AAGV-QVLDLDRPA--------------------AWLE-GYSEENPGTELNPENLAYVIY 662 (5163)
T ss_pred CCEEEEChhhhhhCCc----ccCc-eEEEecCcc--------------------hhhc-cCCCCCCCCCCCCCCeEEEEE
Confidence 9999998765433211 1111 122222110 0000 001111123456899999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++++.+.+....+ +++++|++++.+|++|+++++.++.+|+.|+++++.++....+. .
T Consensus 663 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~-----~ 736 (5163)
T PRK12316 663 TSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDP-----A 736 (5163)
T ss_pred CCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCH-----H
Confidence 99999999999999999999999998888 89999999999999999999999999999999998544322222 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...++++++|++.++|++++.+.+.... .
T Consensus 737 ~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------------------------------~ 767 (5163)
T PRK12316 737 KLVELINREGVDTLHFVPSMLQAFLQDEDV-------------------------------------------------A 767 (5163)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHhcccc-------------------------------------------------c
Confidence 233349999999999999999988652100 0
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccchhcccccccCC--CCCCCCccCCCcCcceEEEEecCCCCcc
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYK 519 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~ 519 (721)
..+++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++.... ......++|+|++|++++|+| +++..
T Consensus 768 ~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~- 845 (5163)
T PRK12316 768 SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEP- 845 (5163)
T ss_pred cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCC-
Confidence 114899999999999999988876554 7899999999999865544332 223457899999999999999 55554
Q ss_pred cCCCCCCcceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecch
Q 004961 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (721)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~ 597 (721)
++.|+.|||+|+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+||+||+ +|+||+|.
T Consensus 846 --~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~-~G~rI~~~ 922 (5163)
T PRK12316 846 --VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKL-RGLRIELG 922 (5163)
T ss_pred --CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEE-ceEEcChH
Confidence 45899999999999999999999999999997433 45589999999999999999999999999998 59999999
Q ss_pred HHHHHHhcCcccceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC
Q 004961 598 KVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF 677 (721)
Q Consensus 598 eIE~~l~~~p~V~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 677 (721)
|||++|.+||+|.+|+|++.+ ...++|+|++.++.. ...++|+++++ ++||.|
T Consensus 923 EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~-------------------------~~~~~l~~~l~-~~Lp~y 975 (5163)
T PRK12316 923 EIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGG-------------------------DWREALKAHLA-ASLPEY 975 (5163)
T ss_pred HHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCC-------------------------CCHHHHHHHHH-hhCCCc
Confidence 999999999999999999987 678999999875320 01267889998 899999
Q ss_pred ccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 678 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 678 ~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
|+|+.|++++++ | +|++||+||++|.+.+.
T Consensus 976 ~vP~~i~~v~~l--P----~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 976 MVPAQWLALERL--P----LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred cCCCeEEEHhhC--C----CCCCCChhHHhhcCccc
Confidence 999999999998 6 99999999999987543
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-67 Score=588.70 Aligned_cols=498 Identities=23% Similarity=0.304 Sum_probs=404.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...|+.++|+++++++|+++|++. ++. .+||+||.+++.++|..|.+.|+++|++|+
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~ 75 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVA 75 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347899999999999999999975 332 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+....+.......+.++.++.++......
T Consensus 76 v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (542)
T PRK06155 76 LMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS 155 (542)
T ss_pred EECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999887776666544444455666655432100
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
....+... ++.. ...........++++++|+|||||||.||||+++|+++.+........+ .+.++++
T Consensus 156 ------~~~~~~~~---~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~ 223 (542)
T PRK06155 156 ------VPAGWSTA---PLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDV 223 (542)
T ss_pred ------cccccchh---hhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCE
Confidence 00001000 1111 1111112334678999999999999999999999999998887777777 8999999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+++.+|++|.+++...+.++..|+++++.+... +..++..++++++|++.++|+++..+.+.....
T Consensus 224 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~------ 289 (542)
T PRK06155 224 LYTTLPLFHTNALNAFFQALLAGATYVLEPRFS--------ASGFWPAVRRHGATVTYLLGAMVSILLSQPARE------ 289 (542)
T ss_pred EEEecCHHHHHHHHHHHHHHHcCceEEeeCCCC--------HHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc------
Confidence 999999999999988888999999998843211 122333399999999999999998876531100
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
....+++|.++.|| +++++.+.+++.+|+++++.||+
T Consensus 290 -----------------------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~ 326 (542)
T PRK06155 290 -----------------------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGS 326 (542)
T ss_pred -----------------------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecc
Confidence 00124788887666 57888888888899999999999
Q ss_pred chhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc---cccccccCCCcccccccccCC
Q 004961 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 480 TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~~~~~~t~~~f~~~~ 556 (721)
||++.+++... .....+++|.|.++++++|+| +++..+ +.|+.|||+++|+ +++.||+++++.|.+.| .
T Consensus 327 tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~---~ 398 (542)
T PRK06155 327 TETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQEL---PDGEPGELLLRADEPFAFATGYFGMPEKTVEAW---R 398 (542)
T ss_pred cccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCCccccchhhcCCHHHHHHhh---c
Confidence 99987765532 334568999999999999998 556554 4788999999998 69999999999999988 6
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~ 633 (721)
+ +||+|||+|++++||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ ..+.+++++..+.
T Consensus 399 ~--~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~ 475 (542)
T PRK06155 399 N--LWFHTGDRVVRDADGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGT 475 (542)
T ss_pred C--CcEeccceEEEcCCceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCC
Confidence 6 89999999999999999999999999996 6999999999999999999999999998764 3577888766432
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
. .+ ..+++++++ ++|+.|++|..|++++++ | +|++||++|++|++++
T Consensus 476 ~--------~~-----------------~~~~~~~~~-~~l~~~~~P~~i~~~~~i--P----~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 476 A--------LE-----------------PVALVRHCE-PRLAYFAVPRYVEFVAAL--P----KTENGKVQKFVLREQG 522 (542)
T ss_pred C--------CC-----------------HHHHHHHHH-hhCcCccCCcEEEEeccC--C----CCcccceeHHHHHhhc
Confidence 0 00 257888888 899999999999999987 6 9999999999999865
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-67 Score=583.01 Aligned_cols=481 Identities=20% Similarity=0.259 Sum_probs=391.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+++.+.|+++++++|+++|+.+ ++. .+||.||.++++++|++|.+.|. +|++|+|+
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~ 56 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAIL 56 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 4688999999999999999975 333 69999999999999999999984 89999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++.++++++.++++.++++++|++......+... . ..++.++
T Consensus 57 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~-------- 122 (487)
T PRK07638 57 LENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-----E-GRVIEID-------- 122 (487)
T ss_pred cCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-----c-ceEEEeh--------
Confidence 9999999999999999999999999999999999999999999999998654433211 0 1122111
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.+.+...... ..........+++++|+|||||||.||||+++|++++..+......+ .+.++|+++
T Consensus 123 ------------~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~ 188 (487)
T PRK07638 123 ------------EWKRMIEKYL-PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVL 188 (487)
T ss_pred ------------hhhhhhhhcc-ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEE
Confidence 1111111111 11111222356789999999999999999999999999988887777 889999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (721)
...|++|..++...+.++..|+++++.+... +..++..++++++|+++++|+++..+.+...
T Consensus 189 ~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------- 250 (487)
T PRK07638 189 IAGTLVHSLFLYGAISTLYVGQTVHLMRKFI--------PNQVLDKLETENISVMYTVPTMLESLYKENR---------- 250 (487)
T ss_pred EeecchHHHHHHHHHHHHccCcEEEEcCCCC--------HHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----------
Confidence 9999999988877888999999999843211 1223333999999999999999998875300
Q ss_pred HHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccc
Q 004961 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLT 480 (721)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~T 480 (721)
...+.+.++++|++++.++.+++...+ ++.+++.||+|
T Consensus 251 -----------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~t 289 (487)
T PRK07638 251 -----------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGAS 289 (487)
T ss_pred -----------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCC
Confidence 002455678899999999999888887 78999999999
Q ss_pred hhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCc
Q 004961 481 ETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559 (721)
Q Consensus 481 E~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~ 559 (721)
|++.++...... ....+++|+|+|+++++|+| ++|.. +++|+.|||+|+|+.++.||+++++.+.+.+ .+
T Consensus 290 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~-- 360 (487)
T PRK07638 290 ELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEE---VQKGEIGTVYVKSPQFFMGYIIGGVLARELN---AD-- 360 (487)
T ss_pred ccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCC---CCCCCCeEEEEecccceeeecCCHHHHhhhc---cC--
Confidence 999776554322 23457999999999999999 55654 4588999999999999999999998877755 56
Q ss_pred ceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHH
Q 004961 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEK 636 (721)
Q Consensus 560 gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~ 636 (721)
|||+|||+|++|++|+++++||++|+||+ +|++|+|.|||+++.+||+|.+|+|++.+++ ..++++|+....
T Consensus 361 g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---- 435 (487)
T PRK07638 361 GWMTVRDVGYEDEEGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT---- 435 (487)
T ss_pred CcEecCccEeEcCCCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC----
Confidence 89999999999999999999999999997 6999999999999999999999999998865 357777764221
Q ss_pred HHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHH
Q 004961 637 WAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 716 (721)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i 716 (721)
.++++++++ ++|+.|++|+.+++++++ | +|++||++|++|++++++ .
T Consensus 436 -------------------------~~~l~~~~~-~~l~~~~~p~~i~~v~~i--P----~t~~GKv~r~~L~~~~~~-~ 482 (487)
T PRK07638 436 -------------------------KQQLKSFCL-QRLSSFKIPKEWHFVDEI--P----YTNSGKIARMEAKSWIEN-Q 482 (487)
T ss_pred -------------------------HHHHHHHHH-HHhhcccCCcEEEEeccc--C----CCCcccccHHHHHHHHhc-c
Confidence 267888888 899999999999999988 6 999999999999877654 3
Q ss_pred Hhhh
Q 004961 717 QMLY 720 (721)
Q Consensus 717 ~~~Y 720 (721)
++.|
T Consensus 483 ~~~~ 486 (487)
T PRK07638 483 EKIY 486 (487)
T ss_pred cccc
Confidence 4444
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=718.62 Aligned_cols=538 Identities=20% Similarity=0.265 Sum_probs=433.6
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|... +..++++...++..+...++ ....+.+...+++++|+++++++|+++|+++ ++.
T Consensus 4518 p~~~---~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~---- 4575 (5163)
T PRK12316 4518 PQRR---LGELQLLEKAEQQRIVALWN---RTDAGYPATRCVHQLVAERARMTPDAVAVVF------------DEE---- 4575 (5163)
T ss_pred cccc---hhhhccCCHHHHHHHHhccC---CCCcCCCccccHHHHHHHHHHhCCCCeEEEe------------CCc----
Confidence 6666 88899888887776654333 1223345567999999999999999999986 332
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 4576 -------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~ 4648 (5163)
T PRK12316 4576 -------KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSG 4648 (5163)
T ss_pred -------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++......+.. ..... ++.++... ++ .......+.....++++|+|+|
T Consensus 4649 ~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~~--------------------~~--~~~~~~~~~~~~~~~~~a~ii~ 4701 (5163)
T PRK12316 4649 AALLLTQSHLLQRLPI----PDGLA-SLALDRDE--------------------DW--EGFPAHDPAVRLHPDNLAYVIY 4701 (5163)
T ss_pred CCEEEechhhhhhccc----ccCcc-eEeecchh--------------------hc--ccCCccCCccCCCCCceEEEEE
Confidence 9999998765443211 11111 11111100 00 0001111223456899999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++++.+.+....+ +++++|++++++|++|+.+...++.+|+.|+++++.+...+ +. .
T Consensus 4702 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~-~~-----~ 4774 (5163)
T PRK12316 4702 TSGSTGRPKGVAVSHGSLVNHLHATGERY-ELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLW-DP-----E 4774 (5163)
T ss_pred CCCCCCCCCEeeeccHHHHHHHHHHHHhc-CCCcCCeEEEecCcchhhHHHHHHHHHhCCCEEEEcCcccC-CH-----H
Confidence 99999999999999999999999998888 89999999999999999999889999999999999554332 21 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...++++++|+++++|++++.+.+..... .
T Consensus 4775 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------------------------------------------------~ 4806 (5163)
T PRK12316 4775 RLYAEIHEHRVTVLVFPPVYLQQLAEHAERD------------------------------------------------G 4806 (5163)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHhhhccc------------------------------------------------c
Confidence 2334499999999999999999987632110 0
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHh-hCCceecccccchhcccccccCCCC-----CCCCccCCCcCcceEEEEecCCC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAYGLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEG 516 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~-~g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~p~~~v~i~d~~~~ 516 (721)
..++||.+++|||++++++.+.+.+. .+++++|+||+||+++.++...... ....++|+|++|++++|+| +++
T Consensus 4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 4885 (5163)
T PRK12316 4807 EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-GQL 4885 (5163)
T ss_pred CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-CCC
Confidence 12589999999999999998666544 4789999999999998776544322 3447899999999999998 556
Q ss_pred CcccCCCCCCcceEEEccccccccccCCCcccccccccCC---CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeee
Q 004961 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (721)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~ 593 (721)
.. ++.|++|||+|+|+++++||+++|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+||+||+ +|+|
T Consensus 4886 ~~---~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki-~G~r 4961 (5163)
T PRK12316 4886 NP---LPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI-RGFR 4961 (5163)
T ss_pred Cc---CCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccceEee-ccEe
Confidence 54 45889999999999999999999999999997432 24579999999999999999999999999998 5999
Q ss_pred ecchHHHHHHhcCcccceEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHH
Q 004961 594 ISLGKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671 (721)
Q Consensus 594 v~~~eIE~~l~~~p~V~~~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 671 (721)
|+|.|||++|.+||+|.+|+|++.++. +.++|+|++...... ...+....+.++|+++++
T Consensus 4962 i~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~-----------------~~~~~~~~~~~~l~~~l~- 5023 (5163)
T PRK12316 4962 IELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA-----------------DADEAQAELRDELKAALR- 5023 (5163)
T ss_pred ecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc-----------------cccccchhhHHHHHHHHh-
Confidence 999999999999999999999987643 469999998754210 011223445678999998
Q ss_pred CCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHHHhhh
Q 004961 672 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 720 (721)
Q Consensus 672 ~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y 720 (721)
++||.||+|..+++++++ | +|++||++|++|.+.+.+.+++.|
T Consensus 5024 ~~lp~y~vP~~~~~~~~l--P----~t~~GKvdR~~L~~~~~~~~~~~~ 5066 (5163)
T PRK12316 5024 ERLPEYMVPAHLVFLARM--P----LTPNGKLDRKALPQPDASLLQQAY 5066 (5163)
T ss_pred ccCchhhCCcceeecccC--C----CCCCcccChhhcCCcccccccccc
Confidence 999999999999999987 6 999999999999988877666554
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-67 Score=584.44 Aligned_cols=487 Identities=24% Similarity=0.320 Sum_probs=399.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai 160 (721)
..+.+.|+++|+++||++|++. +++ .+||+||.++++++|+.|++ .|+++|++|++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i 58 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAI 58 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4588999999999999999985 343 79999999999999999985 79999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+........ ...++.+.
T Consensus 59 ~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 130 (496)
T PRK06839 59 LSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT------- 130 (496)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec-------
Confidence 9999999999999999999999999999999999999999999999999877666555433221 12222211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
+++++.... ........++++++|+|||||||.||+|+++|+++..........+ .+..+|++
T Consensus 131 -------------~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~ 193 (496)
T PRK06839 131 -------------SLKEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRS 193 (496)
T ss_pred -------------chHhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeE
Confidence 222222211 1122345678999999999999999999999999987776666666 88899999
Q ss_pred EeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+..+|++|.+++.. .+.++..|+++++.+... +..++..++++++|++.++|++++.+.+....
T Consensus 194 l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 258 (496)
T PRK06839 194 IVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFE--------PTKALSMIEKHKVTVVMGVPTIHQALINCSKF------- 258 (496)
T ss_pred EEeeCCcchhhHHHHHHHHHhcCcEEEEccCCC--------HHHHHHHHHhhCCeEEEehHHHHHHHHhCccc-------
Confidence 99999999999865 467799999998743221 11223339999999999999999998763110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
.....+++|.+++||+++++++.+.++.. |+++.+.||+
T Consensus 259 ----------------------------------------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~ 297 (496)
T PRK06839 259 ----------------------------------------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGM 297 (496)
T ss_pred ----------------------------------------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccC
Confidence 00112589999999999999999998886 9999999999
Q ss_pred chhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 480 TETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 480 TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
||++..++..... ....+++|+|+++++++|+| +++.. +++|+.|||+|+|+.++.||+++++.+...+ .+
T Consensus 298 tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~ 370 (496)
T PRK06839 298 TETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNK---VEVGEVGELLIRGPNVMKEYWNRPDATEETI---QD 370 (496)
T ss_pred CCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCC---CCCCCceEEEEECCCcchhhcCChHHHHHHH---cC
Confidence 9998755433322 23458999999999999999 45554 4588999999999999999999999998887 66
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~ 634 (721)
|||+|||+|++|++|++++.||.||+||. +|++|+|.+||++|.++|+|.+|+|++.+++. .++|+|+++++.
T Consensus 371 --g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~- 446 (496)
T PRK06839 371 --GWLCTGDLARVDEDGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSS- 446 (496)
T ss_pred --CCeeecceEEEcCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC-
Confidence 89999999999999999999999999996 69999999999999999999999999988654 588999987532
Q ss_pred HHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
..+ .++|+++++ .+|+.|++|..+++++++ | +|++||++|++|+++.++
T Consensus 447 ---------~~~---------------~~~l~~~~~-~~l~~~~~P~~~~~v~~~--P----~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 447 ---------VLI---------------EKDVIEHCR-LFLAKYKIPKEIVFLKEL--P----KNATGKIQKAQLVNQLKS 495 (496)
T ss_pred ---------CCC---------------HHHHHHHHH-hhCcCCCCCcEEEEeccC--C----CCccccccHHHHHHHhhc
Confidence 000 257888888 899999999999999998 6 999999999999987654
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=596.77 Aligned_cols=514 Identities=19% Similarity=0.228 Sum_probs=383.0
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCC
Q 004961 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (721)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd 156 (721)
+++...|+.++|+++++++|+++|+++.+.. ++. .+.++.+||+||.++++++|++|.+. +++||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd 93 (612)
T PRK12476 29 ALPPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGD 93 (612)
T ss_pred cCCccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCC
Confidence 3445579999999999999999999864210 100 12345799999999999999999987 99999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEe-cCCCC--HHHHHHHHHhcCceEEEECccchhHHHhhhccCCCc--eEEEE
Q 004961 157 RAAILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIY 231 (721)
Q Consensus 157 ~Vai~~~n~~e~~~~~lA~~~~G~v~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~ 231 (721)
+|+|+++|+++|+++++||+++|++++|+ ++.++ ++++.+++++++++++|+++...+.+......++.. ..++.
T Consensus 94 ~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (612)
T PRK12476 94 RVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIA 173 (612)
T ss_pred EEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEE
Confidence 99999999999999999999999999999 57776 789999999999999999987766655544333321 23443
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (721)
++..... . ..........++|+++|+|||||||.||||++||+++.+.+......+
T Consensus 174 ~~~~~~~-----------------------~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 229 (612)
T PRK12476 174 IDAIPDS-----------------------A-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI 229 (612)
T ss_pred ecccccc-----------------------c-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 3221000 0 001111234678999999999999999999999999998877766666
Q ss_pred CC-CCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccc-cccchhhccCccccc--eeecceEEeechHHHHHHH
Q 004961 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM-TDTSSKIKKGTKGDV--SVLKPTLMAAVPAIFDRVR 387 (721)
Q Consensus 312 ~~-~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~~~~~i--~~~~~t~l~~~P~~~~~l~ 387 (721)
. +.+++++++++|++|.+|+...+.+++.|+++++..+..+ .+. ..++..+ .++++|+++.+|+++..+.
T Consensus 230 -~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p-----~~~~~~i~~~~~~~t~~~~~P~~~~~l~ 303 (612)
T PRK12476 230 -DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRP-----QRWIKALSEGSRTGRVVTAAPNFAYEWA 303 (612)
T ss_pred -ccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHH-----HHHHHHHhhhccCCeEEEeCCcHHHHHH
Confidence 6 7889999999999999999876666666776665433211 111 1222236 3588999999999988776
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHH
Q 004961 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (721)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~ 467 (721)
........ ......+++| +++||+++++++.+.+.+
T Consensus 304 ~~~~~~~~-------------------------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~ 339 (612)
T PRK12476 304 AQRGLPAE-------------------------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNK 339 (612)
T ss_pred HHhcChhh-------------------------------------------hcCcchhHhe-EEecccCCCHHHHHHHHH
Confidence 52100000 0001124789 999999999999998888
Q ss_pred hh---CC---ceecccccchhcccccccCCCC---------------------------CCCCccCCCcCcceEEEEecC
Q 004961 468 CM---GA---PIGQAYGLTETCAGSTFSEWDD---------------------------PSVGRVGPPVPCCYIKLVSWD 514 (721)
Q Consensus 468 ~~---g~---~l~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~p~~~v~i~d~~ 514 (721)
.+ |+ .+++.||+||++..++...+.. ...+++|+|+||++++|+|.+
T Consensus 340 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~ 419 (612)
T PRK12476 340 AFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPD 419 (612)
T ss_pred HHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCC
Confidence 76 44 4899999999976554332211 012589999999999999954
Q ss_pred CCCcccCCCCCCcceEEEccccccccccCCCcccccccccC-----CC---------CcceEeeCcEEEEccCCeEEEEe
Q 004961 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER---------GMCWFYTGDIGQVYPDGCLEIID 580 (721)
Q Consensus 515 ~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-----~~---------g~gw~~TGDlg~~d~dG~l~i~G 580 (721)
++..+ ++|+.|||+|+|++++.|||++|+.|++.|... .+ +.+||+|||+|+++ ||+|+|+|
T Consensus 420 ~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~G 495 (612)
T PRK12476 420 TGAEL---PDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITG 495 (612)
T ss_pred CCcCC---CCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEe
Confidence 46654 488999999999999999999999999998410 01 23699999999985 99999999
Q ss_pred cCCCeEEcCCeeeecchHHHHHHhc-Ccccce--EEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCH
Q 004961 581 RKKDIVKLQHGEYISLGKVEAALIS-SDYVDN--IMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKA 655 (721)
Q Consensus 581 R~~d~ik~~~G~~v~~~eIE~~l~~-~p~V~~--~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (721)
|+||+||+ +|++|+|.|||++|.+ ||.|.+ ++|++.+++ +.++++|++.++... .
T Consensus 496 R~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~---------~---------- 555 (612)
T PRK12476 496 RIADLIVI-DGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR---------A---------- 555 (612)
T ss_pred ccCcEEEE-CCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc---------c----------
Confidence 99999997 6999999999999985 899999 777887764 468888887653200 0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCcc-ccEEEeeCC--CCCCCCCccCcccccChHHHHHHHHH
Q 004961 656 EAVNEVQQALSKVAKAAKLDKFEI-PAKIKLMPE--PWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 656 ~~~~~~~~~l~~~~~~~~L~~~~~-P~~i~~~~~--~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
..+++.+.+++.+. . .|++ |+.+++++. + | +|++|||+|++|+++|.+
T Consensus 556 -~~~~l~~~~~~~l~-~---~~~~~p~~v~~v~~~~l--P----~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 556 -DPAPAIDAIRAAVS-R---RHGLAVADVRLVPAGAI--P----RTTSGKLARRACRAQYLD 606 (612)
T ss_pred -cHHHHHHHHHHHHH-H---hhCCcceEEEEECCCCc--C----cCCchHHHHHHHHHHHHc
Confidence 01222334444433 1 3667 688888874 5 6 999999999999998864
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=595.56 Aligned_cols=522 Identities=17% Similarity=0.162 Sum_probs=392.8
Q ss_pred HHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 004961 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164 (721)
Q Consensus 85 ~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n 164 (721)
...|.++++++|+++|+++.+ ++. ..++++.+||+||.++++++|++|+++|+++||+|+++++|
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~~----------e~~-----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn 242 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWRD----------EGS-----DDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM 242 (728)
T ss_pred HHHHHHHhccCCCCeEEEEEC----------CCC-----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 346666666799999999853 110 01234689999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch------hHHHhhhccCCCceEEEEecCCCCC
Q 004961 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL------KKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 165 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
++|+++++|||+++|++++|+++.++++++.+++++++++++|+++... +....+..... ..++.+......
T Consensus 243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~ 320 (728)
T PLN03052 243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKS 320 (728)
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCc
Confidence 9999999999999999999999999999999999999999999987532 12222221111 123333221100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCC----CCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRS----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
. .. .. .....+|+++....... ...+....++++++|+|||||||.||||+++|++++..+......+ ++
T Consensus 321 ~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l 394 (728)
T PLN03052 321 V--RV-KL--REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DI 394 (728)
T ss_pred c--cc-cc--ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CC
Confidence 0 00 00 01124577765432111 1111223568999999999999999999999999888776666666 88
Q ss_pred CCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 315 ~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
.++|++++++|++|+++.+.++.+|+.|+++++.+..... ..++..++++++|++.++|++++.+.+....
T Consensus 395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~-------~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~-- 465 (728)
T PLN03052 395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLG-------RGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM-- 465 (728)
T ss_pred CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCC-------ChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--
Confidence 9999999999999999987778899999999985422111 1133449999999999999999988652100
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC-Cce
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-API 473 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g-~~l 473 (721)
+..++++||.+++||++++++...++...++ .++
T Consensus 466 ---------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i 500 (728)
T PLN03052 466 ---------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPI 500 (728)
T ss_pred ---------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCe
Confidence 0112258999999999999999888777665 579
Q ss_pred ecccccchhcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCC--cceEEEcccc--ccccccCCCccc
Q 004961 474 GQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVVGGFN--VTAGYFNNPGKT 548 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~--~GEl~v~g~~--v~~gY~~~~~~t 548 (721)
++.||+||+++.+....+ .....+++|.|++|++++|+| ++|+.++ .|+ .|||+++++. ...+|+++. .+
T Consensus 501 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~---~g~~~~GEL~v~~~~~~~~~~~~~~~-~~ 575 (728)
T PLN03052 501 IEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYP---DDAPCTGELALFPLMFGASSTLLNAD-HY 575 (728)
T ss_pred EeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCC---CCCCceEEEEEeCCCCCCCccccCch-hh
Confidence 999999999865443322 233458999999999999999 6776554 553 6999998653 345677664 33
Q ss_pred ccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHh-cCcccceEEEEecCCC----c
Q 004961 549 SEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI-SSDYVDNIMIHADPFH----N 621 (721)
Q Consensus 549 ~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~-~~p~V~~~~V~g~~~~----~ 621 (721)
..-|...+ ++.+||+|||++++|+||+++|+||.||+||+ +|+||+|.|||++|. .||.|.+++|++.+++ +
T Consensus 576 ~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e 654 (728)
T PLN03052 576 KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPE 654 (728)
T ss_pred hhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcE
Confidence 33342112 23359999999999999999999999999997 599999999999995 7999999999998764 4
Q ss_pred eEEEEEEcC--hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCc
Q 004961 622 YCVALVVPS--HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 622 ~~~A~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 699 (721)
.++|||++. ++. +. + .+++++.|++.++ ++|+++++|+.|++++++ | +|.
T Consensus 655 ~~~afVvl~~~~g~----------~~--------~---~~~L~~~i~~~i~-~~l~~~~~p~~i~~v~~l--P----~T~ 706 (728)
T PLN03052 655 QLVIAAVLKDPPGS----------NP--------D---LNELKKIFNSAIQ-KKLNPLFKVSAVVIVPSF--P----RTA 706 (728)
T ss_pred EEEEEEEEecCCCC----------CC--------C---HHHHHHHHHHHHH-hhcCCccCCCEEEEcCCC--C----CCC
Confidence 689999986 221 00 0 1345577777777 889999999999999998 6 999
Q ss_pred ccccChHHHHHHHHHHHH
Q 004961 700 ALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~~i~ 717 (721)
+|||+|+.|++.+.+...
T Consensus 707 sGKi~Rr~Lr~~~~~~~~ 724 (728)
T PLN03052 707 SNKVMRRVLRQQLAQELS 724 (728)
T ss_pred chHHHHHHHHHHHHhhhh
Confidence 999999999999887653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=578.72 Aligned_cols=477 Identities=27% Similarity=0.370 Sum_probs=396.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
++|+.++|++++.++||++|+.+ ++ +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i 57 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL 57 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999985 22 36999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|++++++++|||+++|++++|+++..+.+++.+++++++++.+++++.....+....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------------------- 117 (483)
T PRK03640 58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-------------------- 117 (483)
T ss_pred ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--------------------
Confidence 999999999999999999999999999999999999999999999999876554332210
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
...++++...............++++++++|||||||.||+|++||+|+...+......+ ++.++|++
T Consensus 118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~ 185 (483)
T PRK03640 118 -----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCW 185 (483)
T ss_pred -----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEE
Confidence 011333332211111122344678999999999999999999999999998887777777 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++.+|++|++++..++.++..|+++++.+... ...++..++++++|++.++|+++..+.+.....
T Consensus 186 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------- 250 (483)
T PRK03640 186 LAAVPIFHISGLSILMRSVIYGMRVVLVEKFD--------AEKINKLLQTGGVTIISVVSTMLQRLLERLGEG------- 250 (483)
T ss_pred EEecCHHHHHHHHHHHHHHhcCCEEEecCCCC--------HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-------
Confidence 99999999999988888899999999854321 122333499999999999999999886531110
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~T 480 (721)
....++|.+++||+++++.+.+.++. +|+++++.||+|
T Consensus 251 -----------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~t 288 (483)
T PRK03640 251 -----------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMT 288 (483)
T ss_pred -----------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccC
Confidence 01148999999999999999988887 499999999999
Q ss_pred hhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCC
Q 004961 481 ETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558 (721)
Q Consensus 481 E~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g 558 (721)
|++..++..... ....+++|+|+++++++|.| + +.. ++.|..|||+|+|++++.||+++++.+.+.| .+
T Consensus 289 E~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~-~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~- 359 (483)
T PRK03640 289 ETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-D-GVV---VPPFEEGEIVVKGPNVTKGYLNREDATRETF---QD- 359 (483)
T ss_pred cccccccccCcccccccCCCcccccCCcEEEEec-C-CCc---CCCCCceEEEEECcchhhhhcCCHHHHHHHH---hc-
Confidence 987654433332 23458999999999999998 3 332 5688999999999999999999999999988 66
Q ss_pred cceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHH
Q 004961 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALE 635 (721)
Q Consensus 559 ~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~ 635 (721)
|||+|||++++++||+++++||+||++|+ +|++|+|.+||+++.++|+|.+++|++.+++. .+++++++....
T Consensus 360 -~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 435 (483)
T PRK03640 360 -GWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV-- 435 (483)
T ss_pred -CCeeccceEEEcCCCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC--
Confidence 89999999999999999999999999996 69999999999999999999999999987653 477777755321
Q ss_pred HHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
+ .++++++++ .+|++|++|+.|++++++ | +|++||++|++|++++++
T Consensus 436 --------~-----------------~~~l~~~~~-~~l~~~~~p~~i~~~~~i--P----~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 436 --------T-----------------EEELRHFCE-EKLAKYKVPKRFYFVEEL--P----RNASGKLLRHELKQLVEE 482 (483)
T ss_pred --------C-----------------HHHHHHHHH-HhccCCCCCcEEEEeCCC--C----CCCccceeHHHHHHHHhh
Confidence 1 256778888 889999999999999988 6 999999999999999875
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=589.04 Aligned_cols=520 Identities=19% Similarity=0.289 Sum_probs=414.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai 160 (721)
.|+.++|+.++..+|+++|+.+ ++. .++.+||+||.+++.++|++|.+ .|+++||+|++
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~------------~~~--------~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~ 69 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTW------------GGA--------EQEQTTFAAIGARAAALAHALHDELGITGDQRVGS 69 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEE------------cCC--------ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 5899999999999999999976 221 23589999999999999999986 79999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++..+.++..+......
T Consensus 70 ~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 148 (576)
T PRK05620 70 MMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADS- 148 (576)
T ss_pred EeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCccccc-
Confidence 9999999999999999999999999999999999999999999999999888777777766777777777665332111
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH--HhhCCCCCCCc
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD 318 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d 318 (721)
.....+....+.+|+++.+.... ........++++++++|||||||.||||++||+++....... ...+ .+.++|
T Consensus 149 -~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~ 225 (576)
T PRK05620 149 -AAAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGE 225 (576)
T ss_pred -chhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCC
Confidence 00111123445678888764322 122234567899999999999999999999999987655443 2235 788899
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|.+++...+.++..|+++++..... . +..++..++++++|+++++|+++..+........
T Consensus 226 ~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---- 294 (576)
T PRK05620 226 SFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDL--S-----APTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---- 294 (576)
T ss_pred eEEEeCChHHhhhhHHHHHHHhcCceEEecCCCC--C-----HHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC----
Confidence 9999999999999988888899999998843211 1 1223344899999999999999988765321100
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....++|.+++||+++++++.+.+.+.+|+++++.||
T Consensus 295 -------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 331 (576)
T PRK05620 295 -------------------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWG 331 (576)
T ss_pred -------------------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecc
Confidence 0013799999999999999999998888999999999
Q ss_pred cchhcccccccCCCC--------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc--
Q 004961 479 LTETCAGSTFSEWDD--------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT-- 548 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~--------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t-- 548 (721)
+||++..++...+.. ....++|++.++++++|+| + +..++ ...+..|||+++|++++.|||++++.|
T Consensus 332 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~~~t~~ 408 (576)
T PRK05620 332 MTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSPTEEGG 408 (576)
T ss_pred ccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCcccccc
Confidence 999987665443221 1124789999999999998 4 44332 234678999999999999999999988
Q ss_pred --ccccccC----------CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEe
Q 004961 549 --SEVYKVD----------ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616 (721)
Q Consensus 549 --~~~f~~~----------~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g 616 (721)
...|..+ .+ |||+|||+|++|+||.++|+||.||+||. +|++|+|.+||++|.+||.|.+|+|++
T Consensus 409 ~~~~~f~~~~~~~~~~~~~~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~ 485 (576)
T PRK05620 409 GAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIG 485 (576)
T ss_pred ccccccccccchhhhcccccC--CcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEe
Confidence 3333210 34 89999999999999999999999999996 699999999999999999999999999
Q ss_pred cCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCC
Q 004961 617 DPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPE 693 (721)
Q Consensus 617 ~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~ 693 (721)
.++.. .++|++++.++.. .+ +...++|+++++ ++|++|++|+.|++++++ |
T Consensus 486 ~~~~~~g~~~~a~v~~~~~~~----------~~------------~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~--P- 539 (576)
T PRK05620 486 YPDDKWGERPLAVTVLAPGIE----------PT------------RETAERLRDQLR-DRLPNWMLPEYWTFVDEI--D- 539 (576)
T ss_pred ccCCCcCceeEEEEEecCCCC----------cc------------cccHHHHHHHHH-hhCccccCCeEEEEeccC--C-
Confidence 88754 5788887765320 00 011367888998 899999999999999988 6
Q ss_pred CCccCcccccChHHHHHHHHH
Q 004961 694 AGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 694 ~~~~t~~gKi~R~~l~~~~~~ 714 (721)
+|++||++|++|++++++
T Consensus 540 ---~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 540 ---KTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred ---CCCcccCcHHHHHHHHhc
Confidence 999999999999999885
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=582.99 Aligned_cols=494 Identities=21% Similarity=0.302 Sum_probs=398.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++|+++|+++ +++ .+||+||.++++++|..|.+.|+++|++|++
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i 78 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTAVV 78 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999974 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|+++|+++++||+++|++++++++..+.+++.++++.+++++++++.... +.........+.++.++.....
T Consensus 79 ~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (527)
T TIGR02275 79 QLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT 158 (527)
T ss_pred ECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC
Confidence 99999999999999999999999999999999999999999999999987642 1222222334555555554321
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
... ........... .........++++++|+|||||||.||||++||+++...+......+ .++
T Consensus 159 ~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~ 222 (527)
T TIGR02275 159 RVE--------------AELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WLT 222 (527)
T ss_pred CCc--------------chhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCC
Confidence 100 00111111111 11112345678999999999999999999999999999988887777 889
Q ss_pred CCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
++|++++.+|++|.+++.. .+.++..|+++++.+.... ..++..++++++|++.++|++++.+.+.....
T Consensus 223 ~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 294 (527)
T TIGR02275 223 QQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSP--------TDCFPLIERHKVTVTALVPPAVALWMQAASKS 294 (527)
T ss_pred cCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCH--------HHHHHHHHHhCCeEEEecHHHHHHHHhCcccc
Confidence 9999999999999999864 6778999999988432211 11233389999999999999998876532110
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCce
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
....+++|.+++||+++++++.+.+.+.+|+++
T Consensus 295 -----------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~ 327 (527)
T TIGR02275 295 -----------------------------------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQL 327 (527)
T ss_pred -----------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeE
Confidence 001248999999999999999999999899999
Q ss_pred ecccccchhcccccccC-CCCCCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccc
Q 004961 474 GQAYGLTETCAGSTFSE-WDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (721)
++.||+||++...+... ......+++|+|+ ++++++|+| ++++.+ ++|+.|||+++|++++.||+++++.|.+.
T Consensus 328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~---~~g~~Gei~v~g~~~~~gY~~~~~~~~~~ 403 (527)
T TIGR02275 328 QQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPV---APGETGMLLTRGPYTFRGYYKAPEHNAAA 403 (527)
T ss_pred EeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCCC---CCCCceEEEecCCccchhhcCChhHhHhh
Confidence 99999999764433221 1223447899999 589999999 566544 47899999999999999999999999998
Q ss_pred cccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEE
Q 004961 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (721)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv 628 (721)
|. .| |||+|||+|++++||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+
T Consensus 404 ~~--~d--g~~~TGDl~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv 478 (527)
T TIGR02275 404 FD--AE--GFYYTGDLVRLTPEGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIV 478 (527)
T ss_pred cC--cC--CCEEcCceEEEcCCccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEE
Confidence 86 56 89999999999999999999999999996 6999999999999999999999999999876 35889988
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHH
Q 004961 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l 708 (721)
++++.. ..++|++++++.+|+.|++|..+++++++ | +|++||++|++|
T Consensus 479 ~~~~~~--------------------------~~~~l~~~l~~~~l~~~~~P~~i~~v~~i--P----~t~sGKv~r~~L 526 (527)
T TIGR02275 479 VRDPAL--------------------------KAAQLRRFLRERGLAEYKLPDRVEFIDSL--P----LTAVGKIDKKAL 526 (527)
T ss_pred ECCCCC--------------------------CHHHHHHHHHhCCCccccCCCEEEEeccC--C----CCCccceeHHhc
Confidence 765320 02578888873459999999999999988 6 999999999987
Q ss_pred H
Q 004961 709 K 709 (721)
Q Consensus 709 ~ 709 (721)
+
T Consensus 527 ~ 527 (527)
T TIGR02275 527 R 527 (527)
T ss_pred C
Confidence 4
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=584.60 Aligned_cols=501 Identities=21% Similarity=0.295 Sum_probs=405.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|.+.++++|+++|+.. ++. .+||+||.++++++|..|++.|+++||+|+|
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i 62 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRILV 62 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999975 332 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.......+....++.++...
T Consensus 63 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (528)
T PRK07470 63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR---- 138 (528)
T ss_pred EcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc----
Confidence 9999999999999999999999999999999999999999999999999887666655544455555666554321
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh-CCCCCCCcE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-IPNPGRSDV 319 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~d~ 319 (721)
...+++++...............++++++|+|||||||.||||+++|+++...+...... +.+..++|+
T Consensus 139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~ 208 (528)
T PRK07470 139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208 (528)
T ss_pred ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence 123455554432222222334567899999999999999999999999997665543332 235678899
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++..+|++|++++...+ .++.|++.++.+...+ + ...++..++++++|++.++|++++.+.+....
T Consensus 209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 274 (528)
T PRK07470 209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERF-D-----PAEVWALVERHRVTNLFTVPTILKMLVEHPAV------- 274 (528)
T ss_pred EEEeccchhHHHHHHHH-HHhcCceEEEecccCc-C-----HHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------
Confidence 99999999999987644 5677777766332211 1 12234449999999999999999988652110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
...+.+++|.+++||++++++..+.+...+|.++++.||+
T Consensus 275 ----------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~ 314 (528)
T PRK07470 275 ----------------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGL 314 (528)
T ss_pred ----------------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCC
Confidence 0012258999999999999999888888889999999999
Q ss_pred chhcccccccCC--------CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccc
Q 004961 480 TETCAGSTFSEW--------DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (721)
Q Consensus 480 TE~~~~~~~~~~--------~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (721)
||+++.++.... .....+++|+|+++++++|+| +++..+ +.|+.|||+++|+.++.||+++++.+++.
T Consensus 315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~~~~~~ 390 (528)
T PRK07470 315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGREL---PPGETGEICVIGPAVFAGYYNNPEANAKA 390 (528)
T ss_pred cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCC---CCCCceEEEEeCCccchhhcCCHHHHHhh
Confidence 999876554322 122347899999999999999 566554 47899999999999999999999999988
Q ss_pred cccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEE
Q 004961 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVV 628 (721)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv 628 (721)
| .+ |||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.+++. .++++++
T Consensus 391 ~---~~--~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~ 464 (528)
T PRK07470 391 F---RD--GWFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCV 464 (528)
T ss_pred h---cC--CcEecceeEEEccCCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEE
Confidence 8 66 89999999999999999999999999997 59999999999999999999999999987653 4788888
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHH
Q 004961 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l 708 (721)
+.++. ..+ .++++++++ ++|++|++|..+++++++ | +|++||++|+.|
T Consensus 465 ~~~~~----------~~~---------------~~~~~~~l~-~~l~~~~~P~~~~~~~~i--P----~t~~GKi~r~~l 512 (528)
T PRK07470 465 ARDGA----------PVD---------------EAELLAWLD-GKVARYKLPKRFFFWDAL--P----KSGYGKITKKMV 512 (528)
T ss_pred ECCCC----------CCC---------------HHHHHHHHH-HhhhcCCCCcEEEEeccC--C----CCCcccccHHHH
Confidence 76432 000 257888888 899999999999999987 6 999999999999
Q ss_pred HHHHHH
Q 004961 709 KAKFKD 714 (721)
Q Consensus 709 ~~~~~~ 714 (721)
++++.+
T Consensus 513 ~~~~~~ 518 (528)
T PRK07470 513 REELEE 518 (528)
T ss_pred HHHHHh
Confidence 988765
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-66 Score=582.47 Aligned_cols=495 Identities=24% Similarity=0.326 Sum_probs=399.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|+++++.+|+++|++..+ +. .+.++.+||+||.++++++|.+|.+.|+++|++|+++
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~ 84 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQ 84 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 689999999999999999997531 11 1223579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEecCCC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG 236 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~ 236 (721)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++... .........++..+.++..+...
T Consensus 85 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03208 85 LPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG 164 (538)
T ss_pred CCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999987642 22333334455566666654321
Q ss_pred CCccCCccCCCCCceEeeHHHHHhcCCCCC-------CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh
Q 004961 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSP-------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (721)
. ..++.+........ .......++++++|+|||||||.||||+++|+++...+.....
T Consensus 165 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~ 229 (538)
T TIGR03208 165 D---------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229 (538)
T ss_pred C---------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence 1 12222221110000 0112346789999999999999999999999999999888888
Q ss_pred hCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHH
Q 004961 310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 385 (721)
.+ ++..+|++++++|++|.+++.. .+.++..|+++++.+ +..+.+. ++++++|++.++|+++..
T Consensus 230 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~ 297 (538)
T TIGR03208 230 RL-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTD 297 (538)
T ss_pred hc-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence 77 8889999999999999998755 677899999998743 3333333 999999999999999988
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHH
Q 004961 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (721)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~ 465 (721)
+....... ....+++|.+++||+++++++.+++
T Consensus 298 l~~~~~~~-----------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~ 330 (538)
T TIGR03208 298 LCRAVKES-----------------------------------------------GAPVPSLFTFLCAGAPIPGILVERA 330 (538)
T ss_pred HHhchhcc-----------------------------------------------CCCCCcceEEEEcCCCCCHHHHHHH
Confidence 76532100 0012489999999999999999988
Q ss_pred HHhhCCceecccccchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 466 NICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 466 ~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
.+.+|++++|.||+||++.+.+...... ....++|+|+|+++++|+| +++..+ ++|+.|||+|+|++++.||++
T Consensus 331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy~~ 406 (538)
T TIGR03208 331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKL---SQGETGRLLVRGCSNFGGYLK 406 (538)
T ss_pred HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCC---cCCCCcEEEEecCcccccccC
Confidence 8888999999999999987665443221 1236899999999999999 555543 478999999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+|+.|.. . .+ |||+|||+|++|++|+|+++||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++
T Consensus 407 ~~~~~~~--~--~~--~~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g 479 (538)
T TIGR03208 407 RPHLNST--D--AE--GWFDTGDLAFQDAEGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLG 479 (538)
T ss_pred Ccccccc--c--CC--CceeccceEEECCCCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCC
Confidence 9988753 2 45 89999999999999999999999999996 6999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
+.++|+|++.++. ..+ .+++++++++.+++.|++|+.+++++++ | +|++
T Consensus 480 ~~~~a~v~~~~~~--------~~~-----------------~~~l~~~~~~~~l~~~~~P~~i~~v~~i--P----~t~~ 528 (538)
T TIGR03208 480 ERACAVVVPKPGC--------TLD-----------------FAAMVAFLKAQKVALQYIPERLEVVDAL--P----ATPA 528 (538)
T ss_pred ceEEEEEEECCCC--------CCC-----------------HHHHHHHHHhcchhhccCCcEEEEeccC--C----CCCc
Confidence 3588999876532 000 2567777763479999999999999988 6 9999
Q ss_pred cccChHHHH
Q 004961 701 LKIKREQLK 709 (721)
Q Consensus 701 gKi~R~~l~ 709 (721)
||++|++|+
T Consensus 529 gKv~r~~L~ 537 (538)
T TIGR03208 529 GKIQKFRLR 537 (538)
T ss_pred cccchHhhc
Confidence 999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-66 Score=581.80 Aligned_cols=509 Identities=21% Similarity=0.266 Sum_probs=407.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++.++|++.+.++|++.++.++. +| +++.+||.||.++++++|++|.+.|+++||+|+++
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~ 70 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRV----------EG---------DIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL 70 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeec----------cC---------cceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 579999999999999998886531 22 23469999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++.++++++.++++.+++++++++....+.+.++...++.++.++.........
T Consensus 71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (539)
T PRK07008 71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP-- 148 (539)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc--
Confidence 999999999999999999999999999999999999999999999999888777776666667776666654332110
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH--HHhhCCCCCCCcE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA--IKTLIPNPGRSDV 319 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~~d~ 319 (721)
. ....+.+++++........ ......++++++++|||||||.||||++||++++..... ....+ ++.++|+
T Consensus 149 ---~--~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~ 221 (539)
T PRK07008 149 ---A--GSTPLLCYETLVGAQDGDY-DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDA 221 (539)
T ss_pred ---c--CCcccccHHHHhcccCCCc-CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCce
Confidence 0 1134566777654332211 123456788999999999999999999999998754332 22345 7888999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+++.+|++|.+++...+.++..|+++++.++.. + ...++..++++++|++.++|+++..+.+.....
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------ 288 (539)
T PRK07008 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDL--D-----GKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------ 288 (539)
T ss_pred EEecCchHHhhhHHHHHHHHhcCceEEEecCCc--C-----HHHHHHHHHHcCCEEEEechHHHHHHHhccccc------
Confidence 999999999888776777899999998853321 1 122333489999999999999999887532110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
....+++|.+++||+++++++.+.+.+.+|+++++.||+
T Consensus 289 -----------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~ 327 (539)
T PRK07008 289 -----------------------------------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGM 327 (539)
T ss_pred -----------------------------------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccc
Confidence 001258999999999999999999988899999999999
Q ss_pred chhcccccccCCCC-----------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 480 TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
||++..++...... ....++|+|+|+++++|+| +++..++ ...++.|||+++|++++.||+++++
T Consensus 328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~~-- 403 (539)
T PRK07008 328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRGDA-- 403 (539)
T ss_pred ccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCChh--
Confidence 99987654332110 1136899999999999999 5565443 1223579999999999999999983
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A 625 (721)
..+ .+ |||+|||+|++|+||+++++||.||+||. +|++|+|.|||+++.+||.|.+++|++.++.. .+++
T Consensus 404 -~~~---~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~ 476 (539)
T PRK07008 404 -SPL---VD--GWFPTGDVATIDADGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLL 476 (539)
T ss_pred -hhh---cC--CCcccCceEEEcCCCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEE
Confidence 334 35 89999999999999999999999999996 69999999999999999999999999988753 4777
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|+..++.. . ..++|+++++ ++|++|++|+.|++++++ | +|++||++|
T Consensus 477 ~v~~~~~~~--------~-----------------~~~~l~~~~~-~~l~~~~~P~~i~~v~~l--P----~t~sgKi~r 524 (539)
T PRK07008 477 VVVKRPGAE--------V-----------------TREELLAFYE-GKVAKWWIPDDVVFVDAI--P----HTATGKLQK 524 (539)
T ss_pred EEEeCCCCc--------c-----------------CHHHHHHHHH-hhcccccCCeEEEEecCC--C----CCCccceeH
Confidence 777654320 0 0267888888 899999999999999988 6 999999999
Q ss_pred HHHHHHHHHH
Q 004961 706 EQLKAKFKDD 715 (721)
Q Consensus 706 ~~l~~~~~~~ 715 (721)
++|++++.+-
T Consensus 525 ~~l~~~~~~~ 534 (539)
T PRK07008 525 LKLREQFRDY 534 (539)
T ss_pred HHHHHHHHhh
Confidence 9999988763
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=585.82 Aligned_cols=516 Identities=22% Similarity=0.331 Sum_probs=409.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|.+.|+++||+|+++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~ 88 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIV 88 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5899999999999999999986 343 59999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc--
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-- 239 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-- 239 (721)
++|+++|+++++||+++|++++|++|.++.+++.+++++++++++|+++.....+..+.... ..+.++.++......
T Consensus 89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 167 (573)
T PRK05605 89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL 167 (573)
T ss_pred CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999887766555443322 233344433111000
Q ss_pred c--------CCcc-----CCCCCceEeeHHHHHhcCCCCC---CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHH
Q 004961 240 D--------SGVS-----GGISNWTVSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303 (721)
Q Consensus 240 ~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~ 303 (721)
. ..+. .........+|+++........ .......++++++++|||||||.||+|++||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~ 247 (573)
T PRK05605 168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247 (573)
T ss_pred cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence 0 0000 0001123356666654322110 1123356789999999999999999999999999888
Q ss_pred HHHHHhhCCCC-CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechH
Q 004961 304 AAAIKTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381 (721)
Q Consensus 304 ~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~ 381 (721)
+......+..+ ..++++++.+|++|.+|+.. .+.++..|+++++.+... ...++..++++++|++.++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~l~~~~~t~~~~~P~ 319 (573)
T PRK05605 248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPD--------IDLILDAMKKHPPTWLPGVPP 319 (573)
T ss_pred HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCC--------HHHHHHHHHHhCCEEEEchHH
Confidence 76655443222 34789999999999999765 556789999988843221 122333389999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHH
Q 004961 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS 461 (721)
Q Consensus 382 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~ 461 (721)
+++.+.+..... ....+++|.+++||+++++++
T Consensus 320 ~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~i~~gg~~l~~~~ 352 (573)
T PRK05605 320 LYEKIAEAAEER-----------------------------------------------GVDLSGVRNAFSGAMALPVST 352 (573)
T ss_pred HHHHHHhCcccc-----------------------------------------------CCCchhccEEEECCCcCCHHH
Confidence 999987632110 001147999999999999999
Q ss_pred HHHHHHhhCCceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCC-CCcccCCCCCCcceEEEccccccc
Q 004961 462 QRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDE-GGYKTSDKPMPRGEIVVGGFNVTA 539 (721)
Q Consensus 462 ~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~-~~~~~~~~~g~~GEl~v~g~~v~~ 539 (721)
.+.+.+.++.++++.||+||++.+++..... ....+++|+|+|++.++|+|+++ +.. ++.|+.|||+++|+.++.
T Consensus 353 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~~g~~Gel~v~~~~~~~ 429 (573)
T PRK05605 353 VELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDET---MPDGEEGELLVRGPQVFK 429 (573)
T ss_pred HHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCcc---CCCCCeeEEEEecCchhh
Confidence 9999888899999999999999776655432 23458999999999999999554 333 457889999999999999
Q ss_pred cccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC
Q 004961 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (721)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~ 619 (721)
||+++++.|.+.| .+ |||+|||+|++|++|+++|+||.||+||+ +|++|+|.+||+++.+|+.|.+++|++.++
T Consensus 430 gy~~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~ 503 (573)
T PRK05605 430 GYWNRPEETAKSF---LD--GWFRTGDVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPR 503 (573)
T ss_pred hhcCChhHhhhcc---cC--CCcccCCEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeec
Confidence 9999999999988 56 79999999999999999999999999996 799999999999999999999999999765
Q ss_pred C---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCc
Q 004961 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGL 696 (721)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~ 696 (721)
. ..++++|++.++.. . + .++|+++++ .+|+.|++|..|++++++ |
T Consensus 504 ~~~~~~~~~~vv~~~~~~--------~--~---------------~~~l~~~~~-~~l~~~~~p~~i~~~~~i--P---- 551 (573)
T PRK05605 504 EDGSEEVVAAVVLEPGAA--------L--D---------------PEGLRAYCR-EHLTRYKVPRRFYHVDEL--P---- 551 (573)
T ss_pred ccCCeEEEEEEEECCCCC--------C--C---------------HHHHHHHHH-HhCccccCCcEEEEeccC--C----
Confidence 4 46888888765320 0 0 267888888 899999999999999887 6
Q ss_pred cCcccccChHHHHHHHHHHHH
Q 004961 697 VTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 697 ~t~~gKi~R~~l~~~~~~~i~ 717 (721)
+|++||++|++|++++.+++.
T Consensus 552 ~t~~GKi~r~~L~~~~~~~~~ 572 (573)
T PRK05605 552 RDQLGKVRRREVREELLEKLG 572 (573)
T ss_pred CCCcccccHHHHHHHHHHHhc
Confidence 999999999999999987764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-66 Score=580.78 Aligned_cols=503 Identities=19% Similarity=0.259 Sum_probs=401.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
.+|+.++|+++++++|+++|+.+. ++. ++++.+||+||.++++++|+.|.++|+++||+|++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-------~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i 67 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE-----------SSG-------GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL 67 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc-----------cCC-------CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 478999999999999999999874 221 33467999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhcc-CCCceEEEEecCCCCCc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS-LKTIKNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~ 239 (721)
+++|+++++++++||+++|++++|+++.++.+++.+++++++++.+|++++..+.+.++... .+.++.++..+.....
T Consensus 68 ~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (517)
T PRK08008 68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA- 146 (517)
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc-
Confidence 99999999999999999999999999999999999999999999999999887776665433 2345555554432111
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
.....+++++...............++++++|+|||||||.||||++||+|+........... .+.++++
T Consensus 147 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~ 216 (517)
T PRK08008 147 ---------DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV 216 (517)
T ss_pred ---------cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence 112344555433222111112334578999999999999999999999999986654333333 6788999
Q ss_pred EEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+++.+|++|..+... ++.++..|+++++.+... +..++..++++++|++.++|++++.+........
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---- 284 (517)
T PRK08008 217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYS--------ARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN---- 284 (517)
T ss_pred EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccC--------HHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc----
Confidence 999999999876654 677788999998854321 1223344899999999999999988764211000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....+++.++++ .+++++....+.+.+|+++++.||
T Consensus 285 -------------------------------------------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG 320 (517)
T PRK08008 285 -------------------------------------------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYG 320 (517)
T ss_pred -------------------------------------------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeecc
Confidence 001357777665 478888888888888999999999
Q ss_pred cchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc---ccccccccCCCccccccccc
Q 004961 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG---FNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g---~~v~~gY~~~~~~t~~~f~~ 554 (721)
+||++..++..... ....+++|+|+++++++|+| +++..+ +.|+.|||+++| ++++.|||++++.|++.|.
T Consensus 321 ~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~- 395 (517)
T PRK08008 321 MTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRPL---PAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE- 395 (517)
T ss_pred ccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCCC---CCCCcceEEEeCCCCcchhhhHhCChHHHhhccc-
Confidence 99998655544332 23447899999999999999 666554 478899999998 6899999999999999986
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcCh
Q 004961 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~ 631 (721)
.+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.+||+++.+||.|.+|+|+|.++. +.+.++|++++
T Consensus 396 -~~--g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~ 471 (517)
T PRK08008 396 -AD--GWLHTGDTGYVDEEGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471 (517)
T ss_pred -CC--CCeeccceEEECCCCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECC
Confidence 56 89999999999999999999999999997 5999999999999999999999999998865 35889999875
Q ss_pred HHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
+. ..+ .++|+++++ .+|++|++|..+++++++ | +|++||++|+.|+
T Consensus 472 ~~--------~~~-----------------~~~l~~~~~-~~l~~~~~P~~~~~v~~i--P----~t~~gK~~r~~l~ 517 (517)
T PRK08008 472 GE--------TLS-----------------EEEFFAFCE-QNMAKFKVPSYLEIRKDL--P----RNCSGKIIKKNLK 517 (517)
T ss_pred CC--------CCC-----------------HHHHHHHHH-hhcccccCCcEEEEeccC--C----CCCccceehhhcC
Confidence 32 000 267888888 889999999999999988 6 9999999999874
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=584.29 Aligned_cols=505 Identities=21% Similarity=0.276 Sum_probs=400.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|.+.++++|+++|+.+.. +++ .+||+||.++++++|+.|.+.|+++||+|
T Consensus 25 ~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V 83 (546)
T PLN02330 25 PDKLTLPDFVLQDAELYADKVAFVEAV----------TGK-----------AVTYGEVVRDTRRFAKALRSLGLRKGQVV 83 (546)
T ss_pred CCCCcHHHHHhhhhhcCCCccEEEecC----------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 445789999999999999999997521 233 69999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|+++.....+.... +. ++.++....
T Consensus 84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i~~~~~~~- 156 (546)
T PLN02330 84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VIVLGEEKI- 156 (546)
T ss_pred EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EEEecCCCC-
Confidence 99999999999999999999999999999999999999999999999999988776654421 11 333332110
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCC--CCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC-CCCC
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG 315 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~ 315 (721)
.....|+++......... ......++++++|+|||||||.||||++||+++...+....... +...
T Consensus 157 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 225 (546)
T PLN02330 157 -----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMI 225 (546)
T ss_pred -----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCcccc
Confidence 112446665543322111 12334578999999999999999999999999987765432111 1223
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
..++++..+|++|.+++.. .+.++..|+++++.+... ...++..++++++|++.++|+++..+.+....
T Consensus 226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-- 295 (546)
T PLN02330 226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFE--------LRTFLNALITQEVSFAPIVPPIILNLVKNPIV-- 295 (546)
T ss_pred CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccC--------HHHHHHHHHHcCCeeeecCCHHHHHHHhCccc--
Confidence 4578999999999999865 567789999988843221 11233339999999999999999988652110
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCce
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPI 473 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l 473 (721)
.. .. +. ..++|.+++||+++++++.+++.+.+ |+++
T Consensus 296 ~~---------------------------~~----------~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~ 332 (546)
T PLN02330 296 EE---------------------------FD----------LS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQV 332 (546)
T ss_pred cc---------------------------cc----------cc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeE
Confidence 00 00 00 01589999999999999999999887 8999
Q ss_pred ecccccchhcccccccC-CC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 474 GQAYGLTETCAGSTFSE-WD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~-~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
++.||+||++.+..... .. ....+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.||+++++.+
T Consensus 333 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~---p~g~~Gel~v~g~~~~~gy~~~~~~~ 409 (546)
T PLN02330 333 QEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL---PKNTPGELCVRSQCVMQGYYNNKEET 409 (546)
T ss_pred EecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC---CCCCceEEEEecchhhhhhccCccch
Confidence 99999999976543221 11 123468999999999999996666554 58899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A 625 (721)
++.|. .+ |||+|||+|++++||+++|+||.||+||+ +|++|+|.+||++|.++|.|.+++|++.+++ ..++|
T Consensus 410 ~~~~~--~~--g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a 484 (546)
T PLN02330 410 DRTID--ED--GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAA 484 (546)
T ss_pred hhhcc--CC--CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEE
Confidence 98875 55 89999999999999999999999999997 5999999999999999999999999998765 35888
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.++.. . ..++|+++++ .+|+.|++|+.+++++++ | +|++||++|
T Consensus 485 ~v~~~~~~~----------~---------------~~~~l~~~~~-~~l~~~~~p~~~~~v~~i--P----~t~~GK~~r 532 (546)
T PLN02330 485 CVVINPKAK----------E---------------SEEDILNFVA-ANVAHYKKVRVVQFVDSI--P----KSLSGKIMR 532 (546)
T ss_pred EEEECCCCC----------C---------------CHHHHHHHHH-HhcccccCceEEEEeccC--C----CCCCcceeH
Confidence 888765320 0 0256778888 899999999999999988 6 999999999
Q ss_pred HHHHHHHHHH
Q 004961 706 EQLKAKFKDD 715 (721)
Q Consensus 706 ~~l~~~~~~~ 715 (721)
++|++++...
T Consensus 533 ~~L~~~~~~~ 542 (546)
T PLN02330 533 RLLKEKMLSI 542 (546)
T ss_pred HHHHHHHHhh
Confidence 9999998654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-66 Score=582.39 Aligned_cols=505 Identities=21% Similarity=0.262 Sum_probs=417.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
..+++.+.++++++++|+++|+.+ +++ .+||.||.++++++|.+|.+.|+++|++|+
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~ 71 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRVL 71 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347899999999999999999986 333 599999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
|+++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++......+.......+.++.++.+++...
T Consensus 72 i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (542)
T PRK07786 72 ILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD-- 149 (542)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc--
Confidence 999999999999999999999999999999999999999999999999998877766665555566777776543211
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC-CCCc
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-GRSD 318 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~d 318 (721)
....+++++........ .......+++++++|||||||.||||++||+++...+......+ ++ ..++
T Consensus 150 ----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 217 (542)
T PRK07786 150 ----------DSVLGYEDLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSD 217 (542)
T ss_pred ----------ccccCHHHHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCc
Confidence 12245666654332221 22334567899999999999999999999999999888877776 65 6789
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|.+|+..++.++..|+++++.+...+ + +..++..++++++|+++++|++++.+........
T Consensus 218 ~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---- 287 (542)
T PRK07786 218 VGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAF-D-----PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---- 287 (542)
T ss_pred eEEEecchHHHHHHHHHHHHHHccCEEEEccCCCc-C-----HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc----
Confidence 99999999999999888889999999988432211 1 2223444999999999999999999875321000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceeccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~Y 477 (721)
...++|.+++||+++++++.+.+.+.+ +.++++.|
T Consensus 288 --------------------------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~Y 323 (542)
T PRK07786 288 --------------------------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAF 323 (542)
T ss_pred --------------------------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeee
Confidence 002699999999999999999988887 78999999
Q ss_pred ccchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC
Q 004961 478 GLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 478 G~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (721)
|+||++.+.+...... ...+++|+|+|++.++|+| +++..+ +.|+.|||+++|+.++.||+++++.|.+.|
T Consensus 324 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f--- 396 (542)
T PRK07786 324 GQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDV---PVGEVGEIVYRAPTLMSGYWNNPEATAEAF--- 396 (542)
T ss_pred cccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCC---cCCCceEEEEEChhhhhhhcCCHHHHHHHh---
Confidence 9999987655433221 2457899999999999999 556543 478999999999999999999999999998
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~ 632 (721)
.+ |||+|||+++++++|.++++||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ ..++++|++...
T Consensus 397 ~~--~~~~TGDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 473 (542)
T PRK07786 397 AG--GWFHSGDLVRQDEEGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND 473 (542)
T ss_pred hC--CcccccceEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC
Confidence 56 89999999999999999999999999997 6999999999999999999999999998755 357888886643
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
.. + ...+++.++++ .++++|++|..+++++++ | +|++||++|++|+++|
T Consensus 474 ~~---------~---------------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~i--P----~t~~GKv~r~~L~~~~ 522 (542)
T PRK07786 474 DA---------A---------------LTLEDLAEFLT-DRLARYKHPKALEIVDAL--P----RNPAGKVLKTELRERY 522 (542)
T ss_pred CC---------C---------------CCHHHHHHHHH-hhccCCCCCCEEEEeccC--C----CCCcccccHHHHHHHH
Confidence 10 0 01267888888 899999999999999987 6 9999999999999999
Q ss_pred HHHH
Q 004961 713 KDDL 716 (721)
Q Consensus 713 ~~~i 716 (721)
.++.
T Consensus 523 ~~~~ 526 (542)
T PRK07786 523 GACV 526 (542)
T ss_pred Hhhh
Confidence 8764
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-66 Score=579.08 Aligned_cols=501 Identities=24% Similarity=0.344 Sum_probs=416.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+.++.+.|++.++.+|+++|+.+ +++ .+||+||.+++.++|..|.+.|+++||+|++
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l 60 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVAI 60 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++............++.++.++.........
T Consensus 61 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (513)
T PRK07656 61 WAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP- 139 (513)
T ss_pred ECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc-
Confidence 9999999999999999999999999999999999999999999999999887776666556666777776654332211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
......+|+++...... ........++++++|+|||||||.||+|.++|+++...+......+ .+.++|++
T Consensus 140 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 210 (513)
T PRK07656 140 -------HTEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRY 210 (513)
T ss_pred -------CccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeE
Confidence 00123466776654322 1223445778999999999999999999999999999988888887 89999999
Q ss_pred EeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++.+|++|.+++.. ++.++..|+++++..... +..++..++++++|++.++|+++..+.+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------ 276 (513)
T PRK07656 211 LAANPFFHVFGYKAGVNAPLMRGATILPLPVFD--------PDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------ 276 (513)
T ss_pred EEccchHHHHHHHHHHHHHHHcCceEEecCcCC--------HHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------
Confidence 99999999999876 677899999998843211 122233399999999999999999987632110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC-ceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~-~l~~~YG 478 (721)
....+++|.+++||+++++++.+.+.+.+++ .+++.||
T Consensus 277 -----------------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG 315 (513)
T PRK07656 277 -----------------------------------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYG 315 (513)
T ss_pred -----------------------------------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEc
Confidence 0012589999999999999999999988898 8999999
Q ss_pred cchhcccccccCCCCC-C--CCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC
Q 004961 479 LTETCAGSTFSEWDDP-S--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~~-~--~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (721)
+||++++++....... . .+++|+|+++++++|+| +++..+ +.|+.|||+++|+.++.||+++++.+...+.
T Consensus 316 ~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-- 389 (513)
T PRK07656 316 LSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEV---PVGEVGELLVRGPNVMKGYYDDPEATAAAID-- 389 (513)
T ss_pred cccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCC---CCCCceEEEEEcchhhhhhcCCHHHHhhhhc--
Confidence 9999877766554322 2 57999999999999999 556544 4788999999999999999999999988874
Q ss_pred CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChH
Q 004961 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (721)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~ 632 (721)
.+ |||+|||+|+++++|.++++||.||+||+ +|++|+|.+||++|.++|+|.+++|++.+++ ..++|+|++++.
T Consensus 390 ~~--~~~~tGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~ 466 (513)
T PRK07656 390 AD--GWLHTGDLGRLDEEGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG 466 (513)
T ss_pred cC--CceeccceEEEcCCeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC
Confidence 36 89999999999999999999999999997 6999999999999999999999999998755 357888887642
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
. +.+ .++|+++++ ..|++|++|..+++++++ | +|++||++|++|++
T Consensus 467 ~--------~~~-----------------~~~l~~~~~-~~l~~~~~p~~i~~v~~i--P----~t~~gK~~r~~l~~ 512 (513)
T PRK07656 467 A--------ELT-----------------EEELIAYCR-EHLAKYKVPRSIEFLDEL--P----KNATGKVLKRALRE 512 (513)
T ss_pred C--------CCC-----------------HHHHHHHHH-hhcccccCCCEEEEecCC--C----CCCccceeHHHHhc
Confidence 1 011 257888888 899999999999999987 6 99999999999975
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=583.44 Aligned_cols=506 Identities=24% Similarity=0.349 Sum_probs=409.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...|+.++|.+.++++|+++|+.+. ++. +.+||+||.++++++|..|.+.|+++||+|+
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~ 72 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYR-----------DQG----------LRWTYREFNEEVDALAKGLLALGIEKGDRVG 72 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEc-----------CCC----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3468999999999999999999864 222 3699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhcc------------
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSS------------ 222 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~------------ 222 (721)
++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|+++... ..+......
T Consensus 73 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (559)
T PRK08315 73 IWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSA 152 (559)
T ss_pred EECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccc
Confidence 999999999999999999999999999999999999999999999999987542 112222111
Q ss_pred -CCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCC-----CCCCCCCCCCeEEEEeecCCCCCcceeeec
Q 004961 223 -LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP-----VDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (721)
Q Consensus 223 -~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s 296 (721)
.+..+.++.++... ......++++........ .......++++++++|||||||.||+|.+|
T Consensus 153 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s 220 (559)
T PRK08315 153 RLPELRRVIFLGDEK------------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLT 220 (559)
T ss_pred cCCCceeEEeecccC------------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEee
Confidence 23344555543321 112345555544321111 111234578899999999999999999999
Q ss_pred cHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEee----CccccccccchhhccCccccceee
Q 004961 297 HGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVL 371 (721)
Q Consensus 297 h~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ 371 (721)
|++++..+......+ ++.++|+++..+|++|.+++.. ++.++..|+++++ .++..+.+ .++++
T Consensus 221 ~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~l~~~ 288 (559)
T PRK08315 221 HRNILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLA-----------AVEEE 288 (559)
T ss_pred HHHHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHH-----------HHHHc
Confidence 999999988888887 8999999999999999999865 6778999999985 23333333 39999
Q ss_pred cceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEE
Q 004961 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451 (721)
Q Consensus 372 ~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~ 451 (721)
++|++.++|+++..+...... +....+++|.++
T Consensus 289 ~~t~~~~~P~~~~~~~~~~~~-----------------------------------------------~~~~~~~lr~~~ 321 (559)
T PRK08315 289 RCTALYGVPTMFIAELDHPDF-----------------------------------------------ARFDLSSLRTGI 321 (559)
T ss_pred CCeEEecchHHHHHHHhCccc-----------------------------------------------CCCCchhhheeE
Confidence 999999999999877642110 001124899999
Q ss_pred ecCCCCCHHHHHHHHHhhCC-ceecccccchhcccccccCCCC---CCCCccCCCcCcceEEEEecCCCCcccCCCCCCc
Q 004961 452 CGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR 527 (721)
Q Consensus 452 ~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~ 527 (721)
+||++++.++.+.+.+.++. ++++.||+||++.+++...... .+..++|+|+|+++++|+|++++..+ +.|+.
T Consensus 322 ~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~ 398 (559)
T PRK08315 322 MAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETV---PRGEQ 398 (559)
T ss_pred ecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcC---CCCCc
Confidence 99999999999988888865 4999999999987765543322 24579999999999999996556554 58899
Q ss_pred ceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCc
Q 004961 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607 (721)
Q Consensus 528 GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p 607 (721)
|||+|+|++++.||+++|+.+++.|. .+ +||+|||+|++|+||.++|+||.||+||+ +|++|+|.|||++|.++|
T Consensus 399 GEl~v~g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~ 473 (559)
T PRK08315 399 GELCTRGYSVMKGYWNDPEKTAEAID--AD--GWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHP 473 (559)
T ss_pred eEEEEECchhhhhhcCChhHHhhcCC--CC--CCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCC
Confidence 99999999999999999999988875 45 89999999999999999999999999997 599999999999999999
Q ss_pred ccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEE
Q 004961 608 YVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIK 684 (721)
Q Consensus 608 ~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~ 684 (721)
+|.+++|++.+++ ..++++|++.++. ..+ .++++++++ ++|+.|++|..++
T Consensus 474 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~~l~-~~l~~~~~P~~i~ 527 (559)
T PRK08315 474 KIQDVQVVGVPDEKYGEEVCAWIILRPGA--------TLT-----------------EEDVRDFCR-GKIAHYKIPRYIR 527 (559)
T ss_pred CceEEEEEecCCCCCCeEEEEEEEeCCCC--------CCC-----------------HHHHHHHHH-hhcccccCCcEEE
Confidence 9999999998765 3588888876432 000 257888887 8999999999999
Q ss_pred eeCCCCCCCCCccCcccccChHHHHHHHHHHHH
Q 004961 685 LMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 685 ~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~ 717 (721)
+++++ | +|++||++|.+|++++.+...
T Consensus 528 ~v~~l--P----~t~~GK~~r~~L~~~~~~~~~ 554 (559)
T PRK08315 528 FVDEF--P----MTVTGKIQKFKMREMMIEELG 554 (559)
T ss_pred EcccC--C----CCCCCceeHHHHHHHHHhhhc
Confidence 99988 6 999999999999999877654
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=579.24 Aligned_cols=506 Identities=23% Similarity=0.314 Sum_probs=413.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|..+++++|+++|+.+ ++. .+||+||.+++.++|..|.+.|+++||+|++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l 66 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA 66 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 233 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....+.......+. ..+........
T Consensus 67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--- 142 (523)
T PRK08316 67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLGG--- 142 (523)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeecccc---
Confidence 99999999999999999999999999999999999999999999999998887776655443331 11111111100
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.........++++....... ........+++++++|||||||.||+|.+||++++.........+ ++.++|++
T Consensus 143 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 215 (523)
T PRK08316 143 -----REAPGGWLDFADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIP 215 (523)
T ss_pred -----cccccchhhHHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceE
Confidence 00112334555554433221 123445778999999999999999999999999999888877777 89999999
Q ss_pred EeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++.+|++|.+++.. ++.++..|+++++.+... +..++..++++++|++.++|+++..+.++...
T Consensus 216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 280 (523)
T PRK08316 216 LHALPLYHCAQLDVFLGPYLYVGATNVILDAPD--------PELILRTIEAERITSFFAPPTVWISLLRHPDF------- 280 (523)
T ss_pred EEccCCchhhhHHHHHHHHHhcCceEEEecCCC--------HHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------
Confidence 99999999999866 455688999998853221 12233449999999999999999888653110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG 478 (721)
+....+++|.+++||++++.++.+.+++.+ ++++++.||
T Consensus 281 ----------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG 320 (523)
T PRK08316 281 ----------------------------------------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG 320 (523)
T ss_pred ----------------------------------------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence 011125899999999999999999998877 789999999
Q ss_pred cchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 479 LTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
+||++.+++.....+ ...+++|+|+++++++|+| +++..+ +.|+.|||+++|+.++.||+++++.+++.| .
T Consensus 321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~---~ 393 (523)
T PRK08316 321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDV---APGEVGEIVHRSPQLMLGYWDDPEKTAEAF---R 393 (523)
T ss_pred ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCC---CCCCcceEEEECCchhhhhcCCHHHHHHHh---h
Confidence 999988766544322 3458999999999999999 556544 478999999999999999999999999988 6
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~ 633 (721)
+ |||+|||+|++++||.++++||.||+||+ +|++|+|.+||+.|.++|+|.+++|++.+++. .++++++++++.
T Consensus 394 ~--~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 470 (523)
T PRK08316 394 G--GWFHSGDLGVMDEEGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGA 470 (523)
T ss_pred C--CCeeccceEEEcCCceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCC
Confidence 6 89999999999999999999999999997 69999999999999999999999999987654 588888877532
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
. . ..+++.++++ .+|+.|++|..+++++++ | +|++||++|++|+++|+
T Consensus 471 ~--------~-----------------~~~~l~~~~~-~~l~~~~~p~~i~~v~~~--p----~t~~gKi~r~~l~~~~~ 518 (523)
T PRK08316 471 T--------V-----------------TEDELIAHCR-ARLAGFKVPKRVIFVDEL--P----RNPSGKILKRELRERYA 518 (523)
T ss_pred C--------C-----------------CHHHHHHHHH-HhcccCCCCcEEEEecCC--C----CCCccceeHHHHHHHHH
Confidence 0 0 0256777777 789999999999999887 6 99999999999999999
Q ss_pred HHHH
Q 004961 714 DDLQ 717 (721)
Q Consensus 714 ~~i~ 717 (721)
+.++
T Consensus 519 ~~~~ 522 (523)
T PRK08316 519 GAFT 522 (523)
T ss_pred hhcc
Confidence 8775
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=572.90 Aligned_cols=496 Identities=24% Similarity=0.375 Sum_probs=403.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++.+++.+++ .+|+++|+... +++ .+||+||.++++++|++|++.|+++||+|+++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~ 59 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ 59 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 58999999999 99999999752 333 79999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++.....+....... ....++.++....
T Consensus 60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 134 (504)
T PRK07514 60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT---- 134 (504)
T ss_pred CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc----
Confidence 99999999999999999999999999999999999999999999999988776665544332 2232333332211
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
..+.+...... .........++++++|+|||||||.||+|++||+++...+......+ .+.++|+++
T Consensus 135 -----------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l 201 (504)
T PRK07514 135 -----------GSLLEAAAAAP-DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLI 201 (504)
T ss_pred -----------ccHHHhhhhcC-cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEE
Confidence 11111111111 11122345678999999999999999999999999999988877777 889999999
Q ss_pred eccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 322 AYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 322 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
+.+|++|..++.. .+.+++.|+++++.+..... .++..+ .++|++.++|+++..+......
T Consensus 202 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~--------~~~~~i--~~~t~~~~~P~~~~~l~~~~~~-------- 263 (504)
T PRK07514 202 HALPIFHTHGLFVATNVALLAGASMIFLPKFDPD--------AVLALM--PRATVMMGVPTFYTRLLQEPRL-------- 263 (504)
T ss_pred EecchHHHHHHHHHHHHHHhcCcEEEECCCCCHH--------HHHHHH--HhheeeecHHHHHHHHHcCCCC--------
Confidence 9999999999865 66789999999985432211 111225 4799999999999888652100
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~T 480 (721)
.....+++|.+++||+++++++.+.+...++.++++.||+|
T Consensus 264 ---------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t 304 (504)
T PRK07514 264 ---------------------------------------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMT 304 (504)
T ss_pred ---------------------------------------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccc
Confidence 00112589999999999999999999998999999999999
Q ss_pred hhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcc
Q 004961 481 ETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560 (721)
Q Consensus 481 E~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~g 560 (721)
|++...+.........+++|.|+++++++|+|++++..+ +.|+.|||+|+|++++.||+++++.+++.|. .+ +
T Consensus 305 E~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~--~ 377 (504)
T PRK07514 305 ETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFR--AD--G 377 (504)
T ss_pred cccccccCCccccccCcccccCCCCcEEEEEECCCCCCC---CCCCceEEEEecCCccccccCCchhhhhhcc--cC--C
Confidence 998665543333344578999999999999996666554 4788999999999999999999999999985 45 8
Q ss_pred eEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHH
Q 004961 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKW 637 (721)
Q Consensus 561 w~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~ 637 (721)
||+|||+|+++++|+++++||.||+||+ +|++|+|.+||+++.++++|.+++|++.+++ ..+++++++.++..
T Consensus 378 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--- 453 (504)
T PRK07514 378 FFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA--- 453 (504)
T ss_pred CeeecceEEEcCCccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC---
Confidence 9999999999999999999999999997 6999999999999999999999999998764 35888888765320
Q ss_pred HHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 638 AHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
.+ .+++++.++ ++|++|++|+.+++++++ | +|++||++|++|+++|++.
T Consensus 454 -----~~-----------------~~~l~~~~~-~~l~~~~~p~~i~~v~~~--p----~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 454 -----LD-----------------EAAILAALK-GRLARFKQPKRVFFVDEL--P----RNTMGKVQKNLLREQYADL 502 (504)
T ss_pred -----CC-----------------HHHHHHHHH-hhcccCCCCcEEEEeccC--C----CCCCcceeHHHHHHHHHhh
Confidence 00 256778887 889999999999999987 6 9999999999999888764
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=577.10 Aligned_cols=507 Identities=22% Similarity=0.306 Sum_probs=408.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+... +|+ .+||+||.++++++|++|++.|+++||+|++
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i 79 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVAF 79 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 368999999999999999999742 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc-----hhHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++.. .+.+......++.++.++.++..
T Consensus 80 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (547)
T PRK06087 80 QLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL 159 (547)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCc
Confidence 9999999999999999999999999999999999999999999999997632 34444455566666677766543
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
... ....++.++........ ......++++++|+|||||||.||+|++||++++.........+ .+.
T Consensus 160 ~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~ 226 (547)
T PRK06087 160 APA-----------TSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLT 226 (547)
T ss_pred CCC-----------cCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCC
Confidence 211 11124455443222111 12345678999999999999999999999999998888877777 889
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
++|++++.+|++|.+++.. .+.++..|+++++.+.... ..++..+.++++|+++++|+.+..+++....
T Consensus 227 ~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-- 296 (547)
T PRK06087 227 WQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTP--------DACLALLEQQRCTCMLGATPFIYDLLNLLEK-- 296 (547)
T ss_pred CCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCH--------HHHHHHHHHcCCCEEeccHHHHHHHHhcccc--
Confidence 9999999999999999765 6677889999988443211 1122338999999999887776666542110
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcee
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~ 474 (721)
....++++|.+++||+++++++.+.+... |++++
T Consensus 297 ---------------------------------------------~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~ 330 (547)
T PRK06087 297 ---------------------------------------------QPADLSALRFFLCGGTTIPKKVARECQQR-GIKLL 330 (547)
T ss_pred ---------------------------------------------CCCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEE
Confidence 00112589999999999999998887764 99999
Q ss_pred cccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccc
Q 004961 475 QAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f 552 (721)
+.||+||++..+...... ....+++|+|+++++++|+| +++..+ +.|+.|||+++|++++.||+++++.+...|
T Consensus 331 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 406 (547)
T PRK06087 331 SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTL---PPGCEGEEASRGPNVFMGYLDEPELTARAL 406 (547)
T ss_pred EEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCC---cCCCcceEEEecccccccccCCHHHHHHHh
Confidence 999999998776544322 12346789999999999999 566543 588999999999999999999999998888
Q ss_pred ccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEc
Q 004961 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVP 629 (721)
Q Consensus 553 ~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~ 629 (721)
. .+ |||+|||++++|++|+++|+||.||+||. +|++|+|.+||++|.++|+|.+++|++.+++. .++++|++
T Consensus 407 ~--~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~ 481 (547)
T PRK06087 407 D--EE--GWYYSGDLCRMDEAGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481 (547)
T ss_pred C--CC--CCcCcCceEEECCCCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEE
Confidence 5 45 89999999999999999999999999996 69999999999999999999999999987653 58888887
Q ss_pred ChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
.+.. ...+ .+++.+++++.+|+.|++|..|.+++++ | +|++||++|++|+
T Consensus 482 ~~~~---------~~~~---------------~~~~~~~~~~~~l~~~~~P~~i~~v~~i--P----~t~sGK~~r~~l~ 531 (547)
T PRK06087 482 KAPH---------HSLT---------------LEEVVAFFSRKRVAKYKYPEHIVVIDKL--P----RTASGKIQKFLLR 531 (547)
T ss_pred CCCC---------CCCC---------------HHHHHHHHHhccccccCCCeEEEEeccC--C----CCCCCcCcHHHHH
Confidence 6421 0000 2456666544789999999999999988 6 9999999999999
Q ss_pred HHHHHHHH
Q 004961 710 AKFKDDLQ 717 (721)
Q Consensus 710 ~~~~~~i~ 717 (721)
+++.+.+.
T Consensus 532 ~~~~~~~~ 539 (547)
T PRK06087 532 KDIMRRLT 539 (547)
T ss_pred HHHHHHhh
Confidence 99988765
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=578.58 Aligned_cols=512 Identities=24% Similarity=0.356 Sum_probs=396.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTR 157 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~ 157 (721)
...+++.++|.++++++|+++|++. +++ .+||+||.++++++|+.|.+. |+++||+
T Consensus 21 ~~~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~ 77 (562)
T PRK12492 21 AAYKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDR 77 (562)
T ss_pred cccCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3446899999999999999999974 333 699999999999999999985 9999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCC-
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG- 236 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~- 236 (721)
|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++++++...+.+..+.... .+..++......
T Consensus 78 V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (562)
T PRK12492 78 IAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDL 156 (562)
T ss_pred EEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhc
Confidence 999999999999999999999999999999999999999999999999999876655444432221 111111111000
Q ss_pred -CCc--------cCCccCC-C--CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHH
Q 004961 237 -SEK--------DSGVSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304 (721)
Q Consensus 237 -~~~--------~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~ 304 (721)
... ....... + ......+|+++...+......+.....+++++|+|||||||.||||++||+|+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~ 236 (562)
T PRK12492 157 LPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANM 236 (562)
T ss_pred cccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHH
Confidence 000 0000000 0 001224566665443322222334567899999999999999999999999998877
Q ss_pred HHHHhhCCC--------CCC-CcEEEeccChHHHHHHHH-HHHHHHhcceEeeC-ccccccccchhhccCccccceeecc
Q 004961 305 AAIKTLIPN--------PGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKP 373 (721)
Q Consensus 305 ~~~~~~~~~--------~~~-~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 373 (721)
......+.. +.. ++++++.+|++|.+++.. .+..+..|++.++. ++... ..++..++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~ 308 (562)
T PRK12492 237 LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDI--------PGFIKELGKWRF 308 (562)
T ss_pred HHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCH--------HHHHHHHHHhCC
Confidence 665544311 222 357899999999999865 45557788876653 22111 112233899999
Q ss_pred eEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEec
Q 004961 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICG 453 (721)
Q Consensus 374 t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~g 453 (721)
|++.++|+++..+.+.... .....+++|.+++|
T Consensus 309 t~~~~~p~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~g 341 (562)
T PRK12492 309 SALLGLNTLFVALMDHPGF-----------------------------------------------KDLDFSALKLTNSG 341 (562)
T ss_pred ceeeCcHHHHHHHHhCcCc-----------------------------------------------ccccccceeEEEec
Confidence 9999999999987652100 01112589999999
Q ss_pred CCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEE
Q 004961 454 GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532 (721)
Q Consensus 454 G~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v 532 (721)
|+++++++.+.+.+.+|+++++.||+||++.+++...... ...+++|+|+|+++++|+| +++..+ ++|+.|||+|
T Consensus 342 G~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~---~~g~~Gel~v 417 (562)
T PRK12492 342 GTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL---PLGERGELCI 417 (562)
T ss_pred cccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCC---CCCCceEEEE
Confidence 9999999999998888999999999999987765544322 2457899999999999999 566544 4789999999
Q ss_pred ccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceE
Q 004961 533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNI 612 (721)
Q Consensus 533 ~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~ 612 (721)
+|+.++.|||++++.|.+.|. .+ |||+|||+|++|++|+++|+||.||+||+ +|++|+|.+||++|.+||.|.++
T Consensus 418 ~g~~~~~gY~~~~~~t~~~~~--~~--g~~~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~ 492 (562)
T PRK12492 418 KGPQVMKGYWQQPEATAEALD--AE--GWFKTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANC 492 (562)
T ss_pred eCCccccccccCchhhhhccc--CC--CceecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEE
Confidence 999999999999999999885 45 89999999999999999999999999997 59999999999999999999999
Q ss_pred EEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCC
Q 004961 613 MIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEP 689 (721)
Q Consensus 613 ~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~ 689 (721)
+|++.++. ..+++++++.+... + .++++++++ ++|+.|++|..+++++++
T Consensus 493 ~v~~~~~~~~~~~~~~~v~~~~~~~---------~-----------------~~~i~~~~~-~~l~~~~~P~~i~~~~~~ 545 (562)
T PRK12492 493 AAIGVPDERSGEAVKLFVVARDPGL---------S-----------------VEELKAYCK-ENFTGYKVPKHIVLRDSL 545 (562)
T ss_pred EEEeccCCCCCceEEEEEEeCCCCC---------C-----------------HHHHHHHHH-HhcccccCCcEEEEeccC
Confidence 99998765 35788887653210 0 257888888 889999999999999988
Q ss_pred CCCCCCccCcccccChHHHHHH
Q 004961 690 WTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 690 ~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
| +|++||++|++|++.
T Consensus 546 --P----~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 546 --P----MTPVGKILRRELRDI 561 (562)
T ss_pred --C----CCCCCceeHHHHHhh
Confidence 6 999999999999864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=629.87 Aligned_cols=510 Identities=24% Similarity=0.312 Sum_probs=405.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|+++++++|+++|++.. +++ .+||+||.++++++|+.|.+ ++++||+|
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V 668 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV 668 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence 44689999999999999999999742 222 69999999999999999987 48999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhh--ccCCCceEEEEecCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLKTIKNVIYFENDG 236 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~ii~~~~~~ 236 (721)
+++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+.... ...+....++..++..
T Consensus 669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1146)
T PRK08633 669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK 748 (1146)
T ss_pred EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence 99999999999999999999999999999999999999999999999999987666554211 1223333444443211
Q ss_pred CCccCCccCCCCCceEeeHHHHHhcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC
Q 004961 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (721)
... .....+.+........ ........++|+++|+|||||||.||||++||+++.+.+......+
T Consensus 749 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~ 818 (1146)
T PRK08633 749 AKI----------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF 818 (1146)
T ss_pred ccc----------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc
Confidence 100 0001122211110000 0001345679999999999999999999999999999998888887
Q ss_pred CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
++.++|++++.+|++|.+++.. .+.++..|+++++.... .+ ...+...++++++|++.++|++++.+.+..
T Consensus 819 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 890 (1146)
T PRK08633 819 -NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP--TD-----ALGIAKLVAKHRATILLGTPTFLRLYLRNK 890 (1146)
T ss_pred -CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC--CC-----HHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence 8899999999999999999876 67789999998873211 01 112233399999999999999999886531
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
.. .....+++|.+++||+++++++.+.+++.+|
T Consensus 891 ~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g 923 (1146)
T PRK08633 891 KL-----------------------------------------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFG 923 (1146)
T ss_pred cc-----------------------------------------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhC
Confidence 10 0112258999999999999999999999899
Q ss_pred CceecccccchhcccccccCCC----------CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcccccccc
Q 004961 471 APIGQAYGLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g 540 (721)
+++++.||+||++.+++...+. ..+.+++|+|+||++++|+|++++..+ ++|+.|||+|+|++++.|
T Consensus 924 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~Gel~v~g~~~~~g 1000 (1146)
T PRK08633 924 IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL---PPGEDGLILIGGPQVMKG 1000 (1146)
T ss_pred CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccC---CCCCceEEEEcCCCcccc
Confidence 9999999999998776544321 124579999999999999997666554 588999999999999999
Q ss_pred ccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCc--ccceEEEEecC
Q 004961 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD--YVDNIMIHADP 618 (721)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p--~V~~~~V~g~~ 618 (721)
|+++|+.|++.|.. .+++|||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+|| .+.+|+|++.+
T Consensus 1001 Y~~~~~~t~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~ 1078 (1146)
T PRK08633 1001 YLGDPEKTAEVIKD-IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVP 1078 (1146)
T ss_pred ccCCccchHHHhhc-CCCCCeEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEecc
Confidence 99999999998852 235589999999999999999999999999997 699999999999999999 46689999988
Q ss_pred CCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCC
Q 004961 619 FHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAG 695 (721)
Q Consensus 619 ~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~ 695 (721)
++. .+++++++.... .+++++.+++.++|+|++|+.+++++++ |
T Consensus 1079 ~~~~g~~~~~~v~~~~~~----------------------------~~~l~~~~~~~~l~~~~~P~~i~~~~~i--P--- 1125 (1146)
T PRK08633 1079 DEKKGEKLVVLHTCGAED----------------------------VEELKRAIKESGLPNLWKPSRYFKVEAL--P--- 1125 (1146)
T ss_pred CCCCCcEEEEEEecCccC----------------------------HHHHHHHHHhcCCCcccCCcEEEEecCc--C---
Confidence 764 578888763211 1456666664689999999999999998 6
Q ss_pred ccCcccccChHHHHHHHHHH
Q 004961 696 LVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 696 ~~t~~gKi~R~~l~~~~~~~ 715 (721)
+|++||++|++|++..++.
T Consensus 1126 -~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1126 -LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred -CCCCCCCcHHHHHHHHHHh
Confidence 9999999999999886654
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=575.07 Aligned_cols=502 Identities=24% Similarity=0.338 Sum_probs=409.8
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
+++++|++.++++|+++|+.+ +++ ++||+||.+++.++|+.|++.|+++|++|++++
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~ 57 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL 57 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 478999999999999999985 332 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCC
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (721)
+|+++++++++||+++|++++|+++.++.+++..+++.++++++|++......+......++.+..++.++.......
T Consensus 58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (515)
T TIGR03098 58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE-- 135 (515)
T ss_pred CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence 999999999999999999999999999999999999999999999998877666665556666666776654322110
Q ss_pred ccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEe
Q 004961 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322 (721)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~ 322 (721)
.......|+++....... .......+++++|+|||||||.||||++||+++...+......+ .+.++|++++
T Consensus 136 -----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~ 207 (515)
T TIGR03098 136 -----GGGESPSWPKLLALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLA 207 (515)
T ss_pred -----CccccccHHHhhcccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEE
Confidence 122334566655432211 22334568899999999999999999999999999988888777 8899999999
Q ss_pred ccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhH
Q 004961 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402 (721)
Q Consensus 323 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 402 (721)
.+|++|.+++...+.++..|+++++.+... +..+...++++++|++.++|+++..+.+....
T Consensus 208 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------- 269 (515)
T TIGR03098 208 VLPLSFDYGFNQLTTAFYVGATVVLHDYLL--------PRDVLKALEKHGITGLAAVPPLWAQLAQLDWP---------- 269 (515)
T ss_pred ECchhhHhHHHHHHHHHHcCCEEEEcCCCC--------HHHHHHHHHHcCCceEecChHHHHHHHhcccC----------
Confidence 999999999988889999999998844221 11223338999999999999999988642100
Q ss_pred HHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccch
Q 004961 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTE 481 (721)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE 481 (721)
....+++|.+++||+++++++.+.+++.+ ++.+++.||+||
T Consensus 270 --------------------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE 311 (515)
T TIGR03098 270 --------------------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE 311 (515)
T ss_pred --------------------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecccc
Confidence 00124899999999999999999998887 688999999999
Q ss_pred hcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC---
Q 004961 482 TCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER--- 557 (721)
Q Consensus 482 ~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~--- 557 (721)
++........ ...+.+++|+|+|+++++|+| +++..+ +.|+.|||+++|+.++.|||++++.|.+.|.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~ 387 (515)
T TIGR03098 312 AFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSEC---APGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPG 387 (515)
T ss_pred ccceEecccccccCCCCCcceecCCCEEEEEC-CCCCCC---CCCCceEEEEcCchhhccccCCchhhhhhhhccCCccc
Confidence 9765443322 123568999999999999998 556544 47889999999999999999999999887752110
Q ss_pred ----CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcC
Q 004961 558 ----GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (721)
Q Consensus 558 ----g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~ 630 (721)
+.+||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ +.+++++++.
T Consensus 388 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~ 466 (515)
T TIGR03098 388 ELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPP 466 (515)
T ss_pred cccccccceeccceEEEcCCceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeC
Confidence 1259999999999999999999999999997 6999999999999999999999999998764 3577887754
Q ss_pred hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.... .+ .++|+++++ ++|++|++|..+++++++ | +|++||++|++|++
T Consensus 467 ~~~~--------~~-----------------~~~l~~~l~-~~l~~~~~p~~i~~v~~i--P----~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 467 GGEE--------LD-----------------RAALLAECR-ARLPNYMVPALIHVRQAL--P----RNANGKIDRKALAA 514 (515)
T ss_pred CCCC--------CC-----------------HHHHHHHHH-hhCccccCCCEEEEeccC--C----CCCCCCCcHHHhcc
Confidence 3210 00 257888888 899999999999999997 6 99999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=579.07 Aligned_cols=507 Identities=24% Similarity=0.337 Sum_probs=405.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|++.++++|+++|+++.+ ++ +.+||+||.++++++|.+|.+.|+++||+|+|+
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~ 76 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW 76 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 689999999999999999998742 22 369999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhc-------------cC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-------------SL 223 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-------------~~ 223 (721)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+++... ..+..... ..
T Consensus 77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (558)
T PRK12583 77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL 156 (558)
T ss_pred CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence 9999999999999999999999999999999999999999999999986432 12222111 12
Q ss_pred CCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCcceeeeccH
Q 004961 224 KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298 (721)
Q Consensus 224 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~ 298 (721)
+.+..++..+.... .....|+++...+... ........++++++++|||||||.||||++||+
T Consensus 157 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~ 224 (558)
T PRK12583 157 PELRGVVSLAPAPP------------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHH 224 (558)
T ss_pred CcceEEEEecCCCC------------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHH
Confidence 33344444332211 1123344443322111 001123457889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEe
Q 004961 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377 (721)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~ 377 (721)
++.+.+......+ ++.++|++++.+|++|.+|... .+.++..|+++++.... .+. ..+...++++++|+++
T Consensus 225 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~--~~~-----~~~~~~i~~~~~t~l~ 296 (558)
T PRK12583 225 NILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA--FDP-----LATLQAVEEERCTALY 296 (558)
T ss_pred HHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC--CCH-----HHHHHHHHHcCCeEEe
Confidence 9999888888777 8899999999999999999866 66778899998863211 111 1122338999999999
Q ss_pred echHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCC
Q 004961 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPL 457 (721)
Q Consensus 378 ~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l 457 (721)
++|+++..+...... .....+++|.+++||+++
T Consensus 297 ~~P~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~i~~~G~~~ 329 (558)
T PRK12583 297 GVPTMFIAELDHPQR-----------------------------------------------GNFDLSSLRTGIMAGAPC 329 (558)
T ss_pred ccHHHHHHHHccccc-----------------------------------------------cCCCchhheEEEecCCCC
Confidence 999998876542110 000124899999999999
Q ss_pred CHHHHHHHHHhhC-CceecccccchhcccccccCCC---CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEc
Q 004961 458 SADSQRFINICMG-APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533 (721)
Q Consensus 458 ~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~ 533 (721)
++++.+.+.+.++ ..+++.||+||++.+++..... ..+..++|+|+|++.++|+|++ +.. ++.|+.|||+|+
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~---~~~g~~Gel~v~ 405 (558)
T PRK12583 330 PIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GAT---VPRGEIGELCTR 405 (558)
T ss_pred CHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCC---CCCCCeeEEEEE
Confidence 9999998888776 4799999999999876654322 2245799999999999999954 554 457899999999
Q ss_pred cccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEE
Q 004961 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613 (721)
Q Consensus 534 g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~ 613 (721)
|+.++.||+++++.+.+.|. .+ +||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||+|.+++
T Consensus 406 g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~ 480 (558)
T PRK12583 406 GYSVMKGYWNNPEATAESID--ED--GWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQ 480 (558)
T ss_pred eCccchhhcCChHHHHhhcC--CC--CCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEE
Confidence 99999999999999988875 45 89999999999999999999999999996 699999999999999999999999
Q ss_pred EEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCC
Q 004961 614 IHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPW 690 (721)
Q Consensus 614 V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~ 690 (721)
|++.++. ..++++|++.++. .. ..++|+++++ ++|+.|++|..+++++++
T Consensus 481 v~~~~~~~~~~~~~~~v~~~~~~----------~~---------------~~~~i~~~~~-~~L~~~~~P~~i~~v~~l- 533 (558)
T PRK12583 481 VFGVPDEKYGEEIVAWVRLHPGH----------AA---------------SEEELREFCK-ARIAHFKVPRYFRFVDEF- 533 (558)
T ss_pred EEeeecCCCCcEEEEEEEECCCC----------CC---------------CHHHHHHHHH-hhcccCcCCcEEEEeccC-
Confidence 9998765 3588888876431 00 0267888888 899999999999999988
Q ss_pred CCCCCccCcccccChHHHHHHHHHHHH
Q 004961 691 TPEAGLVTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 691 ~p~~~~~t~~gKi~R~~l~~~~~~~i~ 717 (721)
| +|++||++|++|++++.++++
T Consensus 534 -P----~t~sGK~~r~~L~~~~~~~~~ 555 (558)
T PRK12583 534 -P----MTVTGKVQKFRMREISIEELA 555 (558)
T ss_pred -C----CCCCCCccHHHHHHHHHhhcC
Confidence 6 999999999999999887654
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=582.88 Aligned_cols=485 Identities=21% Similarity=0.301 Sum_probs=358.2
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
-+.+.|+++++++|+++|+++. ++ +.++++||+||.++++++|++|.++ ++||+|+|++
T Consensus 3 ~~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~ 61 (525)
T PRK05851 3 ELAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVG 61 (525)
T ss_pred hHHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEc
Confidence 3889999999999999999853 11 2357899999999999999999988 8999999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCC--------CCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecC
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSS--------LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 234 (721)
+|++++++++|||+++|++++ +++. ...+++.+++++++++++|++......+......+ .+.+
T Consensus 62 ~~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-------~~~~ 133 (525)
T PRK05851 62 EPTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSV-------TVHD 133 (525)
T ss_pred CCCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhccc-------cccc
Confidence 999999999999999999865 4432 22356667899999999999877655443321110 0000
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
+......... .......++|+++|+|||||||.||||++||+++++.+......+ ++
T Consensus 134 --------------------~~~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~ 190 (525)
T PRK05851 134 --------------------LATAAHTNRS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GL 190 (525)
T ss_pred --------------------cccccccccc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CC
Confidence 0000000000 001224678999999999999999999999999999998888877 88
Q ss_pred C-CCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 315 G-RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 315 ~-~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
. ++|++++++|++|++++..++.+++.|+++++.+...+... +..++..+.++++|++..+|.++..+.+.. ..
T Consensus 191 ~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~-~~ 265 (525)
T PRK05851 191 DAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSAS----PFRWLSWLSDSRATLTAAPNFAYNLIGKYA-RR 265 (525)
T ss_pred CCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHC----HHHHHHHHHHhCCeEEeCCcHHHHHHHHhh-cc
Confidence 8 89999999999999999888889999999988543222111 111233388999998755554444432210 00
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh---hC
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---MG 470 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~---~g 470 (721)
. .....++||.+++||+++++++.+.|.+. +|
T Consensus 266 ~---------------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g 300 (525)
T PRK05851 266 V---------------------------------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFG 300 (525)
T ss_pred c---------------------------------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcC
Confidence 0 00112479999999999999998877764 35
Q ss_pred C---ceecccccchhcccccccCCC---------------CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEE
Q 004961 471 A---PIGQAYGLTETCAGSTFSEWD---------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532 (721)
Q Consensus 471 ~---~l~~~YG~TE~~~~~~~~~~~---------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v 532 (721)
. .++|.||+||++..++...+. ..+.+++|+|+||++++|+|.+.+.. ++.|+.|||+|
T Consensus 301 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~GEl~v 377 (525)
T PRK05851 301 FDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAG---VAGREIGEIEI 377 (525)
T ss_pred CChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCcc---CCCCCeEEEEE
Confidence 4 499999999998765543221 11346899999999999998433222 45789999999
Q ss_pred ccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceE
Q 004961 533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNI 612 (721)
Q Consensus 533 ~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~ 612 (721)
+|++++.|||++|+.+ .+ |||+|||+|+++ +|+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|
T Consensus 378 ~g~~~~~GY~~~~~~~-------~~--~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~ 446 (525)
T PRK05851 378 RGASMMSGYLGQAPID-------PD--DWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREG 446 (525)
T ss_pred ecCchhhccccCCccC-------CC--CceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccc
Confidence 9999999999998642 34 899999999997 8999999999999998 69999999999999999999999
Q ss_pred EEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeC--
Q 004961 613 MIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMP-- 687 (721)
Q Consensus 613 ~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~-- 687 (721)
+|++.+++. .+.++|+..... .+ . +.+.+.+++.+. ..+ +++|+.+++++
T Consensus 447 ~vv~~~~~~~~~~~~~~v~~~~~~---------~~---------~----~~~~~~~~~~l~-~~l--~~~P~~~~~v~~~ 501 (525)
T PRK05851 447 AVVAVGTGEGSARPGLVIAAEFRG---------PD---------E----AGARSEVVQRVA-SEC--GVVPSDVVFVAPG 501 (525)
T ss_pred eEEEEEecCCCCceeEEEEEEecC---------cc---------h----HHHHHHHHHHHH-HHh--CCCccEEEEECCC
Confidence 999876543 355555432110 00 0 112233333333 222 28999999998
Q ss_pred CCCCCCCCccCcccccChHHHHHHHHH
Q 004961 688 EPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 688 ~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
++ | +|++|||+|++|++.+++
T Consensus 502 ~l--P----~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 502 SL--P----RTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred Cc--C----cCcchHHHHHHHHHHHHh
Confidence 55 6 999999999999988764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=573.41 Aligned_cols=499 Identities=18% Similarity=0.259 Sum_probs=401.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..++.++|+++++ |+++|+++ ++. .+||+||.++++++|..|.+.|+++|++|++
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v 78 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTALV 78 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999887 99999985 332 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|+++|+++++||+++|++++++.+.....++..++++++++++++++... .....+....+.++.++..+..
T Consensus 79 ~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (536)
T PRK10946 79 QLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD 158 (536)
T ss_pred ECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC
Confidence 99999999999999999999888777778888999999999999999986531 2233333445566665554321
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
. ...+.++...... ........++++++++|||||||.||||++||+++...+......+ .+.
T Consensus 159 ~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~ 221 (536)
T PRK10946 159 G---------------EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFT 221 (536)
T ss_pred C---------------CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCC
Confidence 1 1223333332211 1112344678999999999999999999999999999998888777 899
Q ss_pred CCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
++|++++.+|++|.+++.. .+.++..|+++++...... ..++..++++++|++.++|+++..+.+.....
T Consensus 222 ~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~--------~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~ 293 (536)
T PRK10946 222 PQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSA--------TLCFPLIEKHQVNVTALVPPAVSLWLQAIAEG 293 (536)
T ss_pred CCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCH--------HHHHHHHHHhCCcEEEeChHHHHHHHhhhccc
Confidence 9999999999999988753 5777999999988432211 11223389999999999999999987642110
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCce
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
.. ....+++|.+++||+++++++.+.+.+.+|+++
T Consensus 294 ~~---------------------------------------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~ 328 (536)
T PRK10946 294 GS---------------------------------------------RAQLASLKLLQVGGARLSETLARRIPAELGCQL 328 (536)
T ss_pred Cc---------------------------------------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeE
Confidence 00 001148999999999999999999988889999
Q ss_pred ecccccchhcccccccCC-CCCCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccc
Q 004961 474 GQAYGLTETCAGSTFSEW-DDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (721)
++.||+||++...+.... .....+++|+|+ |+++++|+| ++++. ++.|+.|||+++|+.++.||+++++.|.+.
T Consensus 329 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~ 404 (536)
T PRK10946 329 QQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHNASA 404 (536)
T ss_pred EEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCC---CCCCCccEEEEecCccchhhcCCcccchhh
Confidence 999999997654332221 122347899999 899999999 56654 458899999999999999999999999999
Q ss_pred cccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEE
Q 004961 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (721)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv 628 (721)
|. .| +||+|||+|++|+||+++++||.+|+||+ +|++|+|.+||++|.+||+|.+++|++.++. ..++|+|+
T Consensus 405 ~~--~d--~~~~TGDl~~~d~~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv 479 (536)
T PRK10946 405 FD--AN--GFYCSGDLVSIDPDGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLV 479 (536)
T ss_pred cc--cC--CceecCceEEECCCCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEE
Confidence 86 56 89999999999999999999999999996 6999999999999999999999999998865 35788888
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHH
Q 004961 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l 708 (721)
+.+.. + .+++++++++.+|++|++|..+++++++ | +|++||++|++|
T Consensus 480 ~~~~~----------~-----------------~~~l~~~~~~~~l~~~~~P~~~~~~~~i--P----~t~~GKv~r~~L 526 (536)
T PRK10946 480 VKEPL----------K-----------------AVQLRRFLREQGIAEFKLPDRVECVDSL--P----LTAVGKVDKKQL 526 (536)
T ss_pred eCCCC----------C-----------------HHHHHHHHHhCCccccccCcEEEEeccC--C----CCCCCcccHHHH
Confidence 76421 0 1577888873359999999999999987 6 999999999999
Q ss_pred HHHHHHHH
Q 004961 709 KAKFKDDL 716 (721)
Q Consensus 709 ~~~~~~~i 716 (721)
++++++..
T Consensus 527 ~~~~~~~~ 534 (536)
T PRK10946 527 RQWLASRA 534 (536)
T ss_pred HHHHHhhc
Confidence 99887654
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=694.56 Aligned_cols=518 Identities=21% Similarity=0.257 Sum_probs=421.7
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|... ++++++++..+...+..++..+ +.+...+++++|+++++++|+++|+.+. +.
T Consensus 1100 p~~~---~~~l~l~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~~~a~~~p~~~Al~~~------------~~---- 1155 (4334)
T PRK05691 1100 PQRA---LGDVQLLDAAERAQLAQWGQAP-----CAPAQAWLPELLNEQARQTPERIALVWD------------GG---- 1155 (4334)
T ss_pred cccc---hhhhcCCCHHHHHHHHhccCCC-----CCCccCCHHHHHHHHHHhCCCCeEEEEC------------Cc----
Confidence 6666 8889998888877766554411 1133478999999999999999999862 32
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 1156 -------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~ 1228 (4334)
T PRK05691 1156 -------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSG 1228 (4334)
T ss_pred -------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++......+.. ..... .+.++.... .......+.....++++|+++|
T Consensus 1229 ~~~vi~~~~~~~~~~~----~~~~~-~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~a~ii~ 1280 (4334)
T PRK05691 1229 VELLLTQSHLLERLPQ----AEGVS-AIALDSLHL-----------------------DSWPSQAPGLHLHGDNLAYVIY 1280 (4334)
T ss_pred CCEEEecchhhhhccc----ccCce-EEeeccccc-----------------------cccCCCCCCCCCCCCCeEEEEE
Confidence 9999999765443321 11111 111111000 0000011122346789999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++.+.+.+....+ .++++|+++++.|++|+.++..++.+|+.|+++++.++....+. .
T Consensus 1281 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~-----~ 1354 (4334)
T PRK05691 1281 TSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDP-----Q 1354 (4334)
T ss_pred cCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCH-----H
Confidence 99999999999999999999999988888 89999999999999999999999999999999999654333222 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...++++++|++.++|++++.+.+.... .
T Consensus 1355 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------------------------------------------------~ 1385 (4334)
T PRK05691 1355 RIAELVQQYGVTTLHFVPPLLQLFIDEPLA-------------------------------------------------A 1385 (4334)
T ss_pred HHHHHHHHcCCeEEECcHHHHHHHHhCccc-------------------------------------------------c
Confidence 233449999999999999999988642100 0
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccchhcccccccCC--CCCCCCccCCCcCcceEEEEecCCCCcc
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYK 519 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~ 519 (721)
..++||.+++||+++++++.+.+...+ +++++|.||+||++..++.... .....+++|+|++|++++|+| ++++.
T Consensus 1386 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~- 1463 (4334)
T PRK05691 1386 ACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNL- 1463 (4334)
T ss_pred cCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCC-
Confidence 114899999999999999998888775 6899999999999877664332 233457899999999999999 55655
Q ss_pred cCCCCCCcceEEEccccccccccCCCcccccccccCC---CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecc
Q 004961 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596 (721)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~ 596 (721)
++.|..|||+|+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+|++||++ |++|+|
T Consensus 1464 --vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~-G~rie~ 1540 (4334)
T PRK05691 1464 --LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLR-GFRVEP 1540 (4334)
T ss_pred --CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEEC-CEEcCH
Confidence 45889999999999999999999999999997432 345799999999999999999999999999984 999999
Q ss_pred hHHHHHHhcCcccceEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCC
Q 004961 597 GKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674 (721)
Q Consensus 597 ~eIE~~l~~~p~V~~~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L 674 (721)
.|||++|.+||+|.+|+|++..+. ..++|++++..+.. . ..++|+++++ .+|
T Consensus 1541 ~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~----------~---------------~~~~l~~~l~-~~L 1594 (4334)
T PRK05691 1541 EEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE----------A---------------EAERLKAALA-AEL 1594 (4334)
T ss_pred HHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC----------C---------------CHHHHHHHHH-HhC
Confidence 999999999999999999876533 56999998764320 0 0257888888 899
Q ss_pred CCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 675 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 675 ~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
|.||+|+.++.++++ | +|++|||||++|++.
T Consensus 1595 p~y~vP~~~~~~~~l--P----~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1595 PEYMVPAQLIRLDQM--P----LGPSGKLDRRALPEP 1625 (4334)
T ss_pred ccccCCcEEEEcccc--C----CCCCCCcChhhcCcc
Confidence 999999999999998 6 999999999999653
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=572.83 Aligned_cols=511 Identities=21% Similarity=0.282 Sum_probs=402.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004961 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 157 (721)
.+...++.++|.++++++|+++|+.. +++ .+||+||.+++.++|+.|.+.|+++||+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~ 62 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGDR 62 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 34557999999999999999999973 222 6999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhc-cCCCceEEEE
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-SLKTIKNVIY 231 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~~~~ii~ 231 (721)
|+++++|+++|+++++||+++|++++|+++..+.+++.+++++++++++|++++.. +.+..... ..+.++.++.
T Consensus 63 V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (540)
T PRK06164 63 VAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAV 142 (540)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999987642 12222211 1344555655
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCC---CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (721)
++...... .. .....+.++........ .......++++++++|||||||.||||++||+++.+.+....
T Consensus 143 ~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~ 214 (540)
T PRK06164 143 VDDAADAT----PA----PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIA 214 (540)
T ss_pred eccCcccC----CC----CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHH
Confidence 54211100 00 00000111111000000 001233568899999999999999999999999999998888
Q ss_pred hhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 309 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
..+ ++.+++++++++|++|.+|+..++.++..|+++++.+.... ..++..++++++|+++++|+++..+.+
T Consensus 215 ~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~l~~~~~t~~~~~p~~l~~l~~ 285 (540)
T PRK06164 215 RAY-GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDA--------ARTARALRRHRVTHTFGNDEMLRRILD 285 (540)
T ss_pred Hhc-CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCH--------HHHHHHHHHhCCeeecCCHHHHHHHHH
Confidence 888 88999999999999999999888889999999988442211 123334999999999999999999876
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecC-CCCCHHHHHHHHH
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG-APLSADSQRFINI 467 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG-~~l~~~~~~~~~~ 467 (721)
... . ....++++.+.++| .+.+.++.+++..
T Consensus 286 ~~~----~--------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (540)
T PRK06164 286 TAG----E--------------------------------------------RADFPSARLFGFASFAPALGELAALARA 317 (540)
T ss_pred hhc----c--------------------------------------------cCCCcceeeeeeccCCcchHHHHHHHhh
Confidence 410 0 00124788776665 5666677777766
Q ss_pred hhCCceecccccchhcccccccCCCC---CCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 468 CMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 468 ~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
. |+++++.||+||++.+++...... ....++|.|+ ++++++|+|++++..+ +.|+.|||||+|++++.||++
T Consensus 318 ~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~gY~~ 393 (540)
T PRK06164 318 R-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALL---PDGESGEIEIRAPSLMRGYLD 393 (540)
T ss_pred c-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCC---CCCCeeEEEEecccccccccC
Confidence 5 899999999999987766544322 1235678876 8999999997666654 478999999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC--c
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--N 621 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--~ 621 (721)
+++.|.+.|. .+ |||+|||+|++|++|.++|.||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+.. .
T Consensus 394 ~~~~t~~~~~--~~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~ 468 (540)
T PRK06164 394 NPDATARALT--DD--GYFRTGDLGYTRGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468 (540)
T ss_pred Cchhhhhccc--CC--CceecCCeEEEcCCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCce
Confidence 9999999986 56 89999999999999999999999999998 5999999999999999999999999997643 3
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccc
Q 004961 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 701 (721)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~g 701 (721)
.+++++++.++.. . -.++|.++++ ++||+|++|+.|++++.+ | +|++|
T Consensus 469 ~~~~~vv~~~~~~--------~-----------------~~~~l~~~~~-~~l~~~~~P~~i~~~~~~--P----~t~~g 516 (540)
T PRK06164 469 VPVAFVIPTDGAS--------P-----------------DEAGLMAACR-EALAGFKVPARVQVVEAF--P----VTESA 516 (540)
T ss_pred eEEEEEEeCCCCC--------C-----------------CHHHHHHHHH-hhcccCcCCcEEEEecCC--C----CCCCC
Confidence 6889998865320 0 0267788888 899999999999999988 6 89998
Q ss_pred ---ccChHHHHHHHHHHHH
Q 004961 702 ---KIKREQLKAKFKDDLQ 717 (721)
Q Consensus 702 ---Ki~R~~l~~~~~~~i~ 717 (721)
|++|+.|++++++.+.
T Consensus 517 ~~~Ki~r~~L~~~~~~~~~ 535 (540)
T PRK06164 517 NGAKIQKHRLREMAQARLA 535 (540)
T ss_pred ccccccHHHHHHHHHHhhh
Confidence 9999999999887654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=571.56 Aligned_cols=506 Identities=27% Similarity=0.385 Sum_probs=425.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++.+|+++|+.. .+. .+||+||.++++++|+.|.+.|+++|++|++
T Consensus 5 ~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l 61 (521)
T PRK06187 5 PLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVAV 61 (521)
T ss_pred cCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999986 232 4999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+..+...++.++.++..++....
T Consensus 62 ~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 139 (521)
T PRK06187 62 FDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-- 139 (521)
T ss_pred ECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc--
Confidence 999999999999999999999999999999999999999999999999999888888887778877777776654321
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.......++.++....... .......++++++++|||||||.||+|.+||+++.+........+ ++.++|++
T Consensus 140 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~ 211 (521)
T PRK06187 140 ------PLAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVY 211 (521)
T ss_pred ------ccccccccHHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEE
Confidence 0112345566665433222 122345678999999999999999999999999999888888877 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++.+|++|.+++...+.++..|+++++.+.. + ...++..++++++|+++++|++++.+.+.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~---~-----~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------- 276 (521)
T PRK06187 212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRF---D-----PENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------- 276 (521)
T ss_pred EEeCCchHHhhHHHHHHHHHhCCEEEecCCC---C-----HHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------
Confidence 9999999999998877799999999985543 1 122344499999999999999999987632210
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~T 480 (721)
....+++|.+++||++++.++.+.+.+.+++++++.||+|
T Consensus 277 ----------------------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~t 316 (521)
T PRK06187 277 ----------------------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMT 316 (521)
T ss_pred ----------------------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccC
Confidence 0112489999999999999999999988899999999999
Q ss_pred hhcccccccCCCCC------CCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004961 481 ETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 481 E~~~~~~~~~~~~~------~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
|++.++........ ..+++|+|+|+++++|+| +++..++ ...|+.|||+++|+.++.||+++++.+.+.|
T Consensus 317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~-~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-- 392 (521)
T PRK06187 317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELP-PDGGEVGEIIVRGPWLMQGYWNRPEATAETI-- 392 (521)
T ss_pred ccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCC-CCCCCeeEEEEECcchhhhhcCCHHHHHHHh--
Confidence 99877665544333 557999999999999999 5565443 2238899999999999999999999999988
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcCh
Q 004961 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~ 631 (721)
.+ +||+|||+++++++|.+++.||.||+||+ +|++|+|.+||++|.++++|.+++|++.+++ ..+++++++.+
T Consensus 393 -~~--~~~~tGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 468 (521)
T PRK06187 393 -DG--GWLHTGDVGYIDEDGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKP 468 (521)
T ss_pred -hC--CceeccceEEEcCCCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECC
Confidence 56 79999999999999999999999999997 5999999999999999999999999998654 46888888765
Q ss_pred HHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+. ..+ .++++++++ .+|++|++|..+++++++ | +|++||++|++|+++
T Consensus 469 ~~----------~~~---------------~~~l~~~l~-~~l~~~~~p~~i~~v~~~--P----~t~~gK~~r~~l~~~ 516 (521)
T PRK06187 469 GA----------TLD---------------AKELRAFLR-GRLAKFKLPKRIAFVDEL--P----RTSVGKILKRVLREQ 516 (521)
T ss_pred CC----------CCC---------------HHHHHHHHH-HhccCCCCceEEEEccCC--C----CCCCCCeeHHHHHHH
Confidence 32 000 256777777 889999999999999987 6 999999999999999
Q ss_pred HHH
Q 004961 712 FKD 714 (721)
Q Consensus 712 ~~~ 714 (721)
|++
T Consensus 517 ~~~ 519 (521)
T PRK06187 517 YAE 519 (521)
T ss_pred Hhc
Confidence 875
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=584.58 Aligned_cols=533 Identities=21% Similarity=0.262 Sum_probs=399.3
Q ss_pred ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcE
Q 004961 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (721)
Q Consensus 50 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (721)
+..++...+..+..+..... .....-....|+.++|.++++++|+++|+++ +++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~----------- 61 (600)
T PRK08279 8 AARLPRRLPDLPGILRGLKR---TALITPDSKRSLGDVFEEAAARHPDRPALLF------------EDQ----------- 61 (600)
T ss_pred eccccccCCchhHHHhhhhh---hcccCCCCcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------
Confidence 34444444555554443333 1111113357999999999999999999986 333
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++
T Consensus 62 ~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~ 141 (600)
T PRK08279 62 SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVG 141 (600)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCC----CCCCCCCCCCeEEEEeecC
Q 004961 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP----VDPSLPSQNGVAVIMYTSG 285 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSG 285 (721)
.+..+.+............++..+..... ....+.++.......+ .......++++++|+||||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSG 209 (600)
T PRK08279 142 EELVEAFEEARADLARPPRLWVAGGDTLD------------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSG 209 (600)
T ss_pred hHHHHHHHHHhhhhcccceEEEecCcccc------------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCC
Confidence 98877776655444443333333221100 0122333332221111 1113346789999999999
Q ss_pred CCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHH-HHHHHhcceEeeCccccccccchhhccCc
Q 004961 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364 (721)
Q Consensus 286 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~l~~G~~~~~~~~~~~~~~~~~~~~~~ 364 (721)
|||.||||++||+++++.+.+....+ .+.++|++++.+|++|.+++... +.++..|+++++.+... ...+
T Consensus 210 TTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~ 280 (600)
T PRK08279 210 TTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFS--------ASRF 280 (600)
T ss_pred CCCCCcEEEEeHHHHHHHHHHHHHhc-CCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCC--------HHHH
Confidence 99999999999999999999888887 89999999999999999998764 45678888888843211 1112
Q ss_pred cccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhC
Q 004961 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444 (721)
Q Consensus 365 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (721)
+..++++++|++.++|++++.+........ ...
T Consensus 281 ~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~-----------------------------------------------~~~ 313 (600)
T PRK08279 281 WDDVRRYRATAFQYIGELCRYLLNQPPKPT-----------------------------------------------DRD 313 (600)
T ss_pred HHHHHHhcceEEeehHHHHHHHHhCCCCcc-----------------------------------------------ccC
Confidence 333899999999999999988765211000 001
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHhhCC-ceecccccchhcccccccCCCCCCCCccCCCcC----cceEEEEecCCC---
Q 004961 445 GRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP----CCYIKLVSWDEG--- 516 (721)
Q Consensus 445 ~~lr~v~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p----~~~v~i~d~~~~--- 516 (721)
.++|.+ +|+.+++++.+.+...++. .++|.||+||++..++.. ....+++|++.+ +..+...+.+.+
T Consensus 314 ~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 388 (600)
T PRK08279 314 HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPV 388 (600)
T ss_pred cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcCcee
Confidence 367754 4778999999999888876 599999999988643321 234467887666 333322221111
Q ss_pred ----CcccCCCCCCcceEE--EccccccccccCCCcccccccccC--CCCcceEeeCcEEEEccCCeEEEEecCCCeEEc
Q 004961 517 ----GYKTSDKPMPRGEIV--VGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588 (721)
Q Consensus 517 ----~~~~~~~~g~~GEl~--v~g~~v~~gY~~~~~~t~~~f~~~--~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~ 588 (721)
+....+++|+.|||+ ++|++++.|| ++++.|.+.|..+ .++.+||+|||+|++|+||+|+|.||.||+||+
T Consensus 389 ~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~ 467 (600)
T PRK08279 389 RDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW 467 (600)
T ss_pred eCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEE
Confidence 111225678999998 7899999999 9999998887531 234489999999999999999999999999997
Q ss_pred CCeeeecchHHHHHHhcCcccceEEEEecCCC----ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHH
Q 004961 589 QHGEYISLGKVEAALISSDYVDNIMIHADPFH----NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664 (721)
Q Consensus 589 ~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~----~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (721)
+|++|+|.|||++|.+||+|.+|+|++.+++ ...+++++..++. ..+ .++
T Consensus 468 -~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~--------~~~-----------------~~~ 521 (600)
T PRK08279 468 -KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGA--------EFD-----------------LAA 521 (600)
T ss_pred -CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCc--------cCC-----------------HHH
Confidence 6999999999999999999999999987643 2344555543221 000 267
Q ss_pred HHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 665 LSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 665 l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
++++++ .+|+.|++|+.|++++++ | +|++||++|++|++++.+.
T Consensus 522 l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 522 LAAHLY-ERLPAYAVPLFVRLVPEL--E----TTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred HHHHHH-hhCccccCCeEEEeecCC--C----CCcchhhhHHHHhhcCCCc
Confidence 888998 899999999999999998 6 9999999999999876544
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=567.21 Aligned_cols=489 Identities=22% Similarity=0.291 Sum_probs=394.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+.++.++|+++++++|+++|+.+ +++ .+||.||.+++.++|.+|.+.|+++|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i 57 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVAL 57 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46889999999999999999976 443 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....... ....+.++....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~--- 127 (497)
T PRK06145 58 LMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQ--- 127 (497)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCccc---
Confidence 9999999999999999999999999999999999999999999999998765433210 011222221100
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
..+..+.. ............++++++++|||||||.||+|++||+++...+......+ ++..++++
T Consensus 128 ------------~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~ 193 (497)
T PRK06145 128 ------------ADSRRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERL 193 (497)
T ss_pred ------------chhHHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEE
Confidence 00111111 11111112345678999999999999999999999999987776666666 88999999
Q ss_pred EeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+..+|++|.+++.. .+.++..|+++++.+... ...++..++++++|++.++|+++..++......
T Consensus 194 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------ 259 (497)
T PRK06145 194 LVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFD--------PEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------ 259 (497)
T ss_pred EEecCchhHhHHHHHHHHHHhccCEEEECCcCC--------HHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc------
Confidence 99999999998865 466789999998743211 112233399999999999999999886521100
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG 478 (721)
....+++|.+++||+++++++.+.+.+.+ +.++++.||
T Consensus 260 -----------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG 298 (497)
T PRK06145 260 -----------------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYG 298 (497)
T ss_pred -----------------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeec
Confidence 00114799999999999999998888877 678999999
Q ss_pred cchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
+||++..++..... ....+++|+|+|+++++|+| +++.. .++|+.|||+++|++++.||+++++.|++.| .
T Consensus 299 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~---~ 371 (497)
T PRK06145 299 LTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRW---LPPNMKGEICMRGPKVTKGYWKDPEKTAEAF---Y 371 (497)
T ss_pred CcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCC---CCCCCceEEEEECcchhhhhcCChHHHHHHH---h
Confidence 99998765544322 22457899999999999999 55554 3478899999999999999999999999998 5
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~ 633 (721)
+ +||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.++|+|.+++|++.++. +.+++++++.+..
T Consensus 372 ~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 448 (497)
T PRK06145 372 G--DWFRSGDVGYLDEEGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA 448 (497)
T ss_pred C--CCeeccceEEEcCCCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC
Confidence 6 89999999999999999999999999997 6999999999999999999999999998765 3688888876432
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
..+ .++|+++++ ++|++|++|..+++++++ | +|++||++|++|++++.
T Consensus 449 ----------~~~---------------~~~l~~~~~-~~l~~~~~p~~i~~v~~i--P----~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 449 ----------TLT---------------LEALDRHCR-QRLASFKVPRQLKVRDEL--P----RNPSGKVLKRVLRDELN 496 (497)
T ss_pred ----------CCC---------------HHHHHHHHH-HhhhcCCCCCEEEEeccC--C----CCCcccccHHHHHHHhc
Confidence 000 257888888 889999999999999998 6 99999999999998753
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=566.99 Aligned_cols=483 Identities=20% Similarity=0.274 Sum_probs=385.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA 158 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V 158 (721)
.+.|+.++|.+.+. ++++|+++ +++ ++||+||.++++++|++|+++ |+++|++|
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V 57 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPHV 57 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 45689999988875 78999875 443 799999999999999999997 89999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+++.....+..+. +.+.. +..+.
T Consensus 58 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~-~~~~~---- 129 (529)
T PRK07867 58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVRV-INVDS---- 129 (529)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCceE-EEecc----
Confidence 99999999999999999999999999999999999999999999999999988766554432 22222 21111
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCc
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
..+.++...............++++++|+|||||||.||||++||+++..........+ ++.++|
T Consensus 130 --------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d 194 (529)
T PRK07867 130 --------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDD 194 (529)
T ss_pred --------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCccc
Confidence 11333332211111122345678999999999999999999999999998888888887 889999
Q ss_pred EEEeccChHHHHHHHH-HHHHHHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
++++.+|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|++.++|+.+..++.....
T Consensus 195 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~-- 261 (529)
T PRK07867 195 VCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPER-- 261 (529)
T ss_pred EEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCc--
Confidence 9999999999999866 55678899999883 33333333 8999999999999998877542100
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcee
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~ 474 (721)
. ....+++|. ++||+.+++.. ..+.+.+|++++
T Consensus 262 ---~------------------------------------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~ 294 (529)
T PRK07867 262 ---P------------------------------------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVV 294 (529)
T ss_pred ---c------------------------------------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEE
Confidence 0 000136774 56888888776 455566799999
Q ss_pred cccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCC------------cceEEE-ccccccccc
Q 004961 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP------------RGEIVV-GGFNVTAGY 541 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~------------~GEl~v-~g~~v~~gY 541 (721)
+.||+||++..++... ....+++|.|+++ ++|+|++++..+ +.|+ .|||++ +|++++.||
T Consensus 295 ~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~---~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy 367 (529)
T PRK07867 295 DGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTEC---PPAEDADGRLLNADEAIGELVNTAGPGGFEGY 367 (529)
T ss_pred EeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCCC---CCCccccccccccCCcceEEEEecCCcccccc
Confidence 9999999986554322 2345789999998 778885555543 3556 899999 999999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~ 621 (721)
+++++.|.+.| .+ |||+|||+|+++++|+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.
T Consensus 368 ~~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~ 441 (529)
T PRK07867 368 YNDPEADAERM---RG--GVYWSGDLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPV 441 (529)
T ss_pred cCChHhhhhhh---cC--CeEeeccEEEEeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence 99999999988 66 89999999999999999999999999997 69999999999999999999999999998653
Q ss_pred ---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHH-CCCCCCccccEEEeeCCCCCCCCCcc
Q 004961 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA-AKLDKFEIPAKIKLMPEPWTPEAGLV 697 (721)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~L~~~~~P~~i~~~~~~~~p~~~~~ 697 (721)
.++++|++.++.. .+ .+++++++++ ..|++|++|..|++++++ | +
T Consensus 442 ~g~~~~a~vv~~~~~~--------~~-----------------~~~l~~~~~~~~~l~~~~~P~~i~~~~~i--P----~ 490 (529)
T PRK07867 442 VGDQVMAALVLAPGAK--------FD-----------------PDAFAEFLAAQPDLGPKQWPSYVRVCAEL--P----R 490 (529)
T ss_pred CCeeEEEEEEECCCCC--------CC-----------------HHHHHHHHHhhccCCcccCCeEEEEeecc--C----C
Confidence 5888888765320 00 1456666652 259999999999999998 6 9
Q ss_pred CcccccChHHHHHHHHH
Q 004961 698 TAALKIKREQLKAKFKD 714 (721)
Q Consensus 698 t~~gKi~R~~l~~~~~~ 714 (721)
|++||++|++|+++..+
T Consensus 491 t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 491 TATFKVLKRQLSAEGVD 507 (529)
T ss_pred CCCcceeHHHHHHhcCC
Confidence 99999999999987643
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-64 Score=567.58 Aligned_cols=509 Identities=20% Similarity=0.273 Sum_probs=402.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.|+.++|+++++++|++++++... +| .++++||+||.++++++|++|.+.|+++||+|+++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~ 70 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRSV----------EG---------PIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATI 70 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEeec----------cC---------CceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 699999999999999999997421 22 23579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.+.....+.++.++...+.....
T Consensus 71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (542)
T PRK06018 71 AWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMP-- 148 (542)
T ss_pred cCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccccc--
Confidence 999999999999999999999999999999999999999999999999988877777666666666666554321100
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHH-HHH-HHHHhhCCCCCCCcE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV-ATA-AAIKTLIPNPGRSDV 319 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~-~~~~~~~~~~~~~d~ 319 (721)
. ........++++...... ........++++++|+|||||||.||||++||++.+ +.. ......+ ++..+|+
T Consensus 149 ---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~ 222 (542)
T PRK06018 149 ---Q-TTLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADT 222 (542)
T ss_pred ---c-cCccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCE
Confidence 0 000123355665543221 111233466889999999999999999999999743 322 2233445 7889999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++..+|++|.+++...+.++..|+++++.... .+. ..++..++++++|+++++|+++..+.+.....
T Consensus 223 ~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~--~~~-----~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~------ 289 (542)
T PRK06018 223 MLPVVPLFHANSWGIAFSAPSMGTKLVMPGAK--LDG-----ASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE------ 289 (542)
T ss_pred EEEecCHHHHhhhHHHHhhhhcCceEEccCcC--CCH-----HHHHHHHHhcCCceeecCcHHHHHHHhccccc------
Confidence 99999999999988777889999999874321 111 12233489999999999999999887532110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
....+++|.+++||+++++++.+.+++ +++++++.||+
T Consensus 290 -----------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~ 327 (542)
T PRK06018 290 -----------------------------------------GLKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGM 327 (542)
T ss_pred -----------------------------------------CCCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecc
Confidence 001148999999999999999999998 89999999999
Q ss_pred chhcccccccCCCC-----------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 480 TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
||++.+++...... ....++|+|.++++++|+| +++..++ .+.+..|||+++|++++.|||++ +
T Consensus 328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy~~~---~ 402 (542)
T PRK06018 328 TEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAYYRV---D 402 (542)
T ss_pred cccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhhhcC---c
Confidence 99987655432111 0135789999999999999 5665544 22235799999999999999983 2
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A 625 (721)
...+. .+ |||+|||+|+++++|++++.||.||+||+ +|++|+|.|||+++.+||+|.+|+|++.+++ +.+.+
T Consensus 403 ~~~~~--~~--~~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 477 (542)
T PRK06018 403 GEILD--DD--GFFDTGDVATIDAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLL 477 (542)
T ss_pred ccEec--CC--cEEEcCCEEEEcCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEE
Confidence 33332 44 89999999999999999999999999996 6999999999999999999999999998765 35788
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.++. ..+ .++++++++ .+|+.|++|+.+++++++ | +|++||++|
T Consensus 478 ~v~~~~~~----------~~~---------------~~~l~~~~~-~~l~~~~~P~~i~~v~~i--P----~t~~GKi~r 525 (542)
T PRK06018 478 IVQLKPGE----------TAT---------------REEILKYMD-GKIAKWWMPDDVAFVDAI--P----HTATGKILK 525 (542)
T ss_pred EEEeCCCC----------CCC---------------HHHHHHHHH-hhCccccCCcEEEEeccC--C----CCCcchhhH
Confidence 88776532 110 257888888 899999999999999988 6 999999999
Q ss_pred HHHHHHHHH
Q 004961 706 EQLKAKFKD 714 (721)
Q Consensus 706 ~~l~~~~~~ 714 (721)
++|+++|.+
T Consensus 526 ~~L~~~~~~ 534 (542)
T PRK06018 526 TALREQFKD 534 (542)
T ss_pred HHHHHHHhc
Confidence 999998865
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=567.35 Aligned_cols=498 Identities=22% Similarity=0.252 Sum_probs=404.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|.++++++|+++|+++ ++. .+||+||.++++++|..|.+.|+++|++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i 67 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVAL 67 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36899999999999999999985 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc-chhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
+++|+++++++++||+++|++++|+++..+.+++.++++.++++.+++++. ....+.......+.+..++.++.....
T Consensus 68 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (524)
T PRK06188 68 LSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDG- 146 (524)
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccch-
Confidence 999999999999999999999999999999999999999999999999886 344444444445555555554432110
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
....+......... ......++++++|+|||||||.||+|++||+++...+......+ .+.++|+
T Consensus 147 -------------~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 211 (524)
T PRK06188 147 -------------VDLLAAAAKFGPAP-LVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPR 211 (524)
T ss_pred -------------hhHHHhhhccCccc-ccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcE
Confidence 00111111001111 11223456799999999999999999999999999988888887 8899999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
+++.+|++|.+++. .+.+++.|+++++.+... +..++..++++++|++.++|+++..+.+....
T Consensus 212 ~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~------- 275 (524)
T PRK06188 212 FLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFD--------PAEVLRAIEEQRITATFLVPTMIYALLDHPDL------- 275 (524)
T ss_pred EEEecCchhhhhHH-HHHHHHcCCEEEEcCCCC--------HHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc-------
Confidence 99999999998875 467788999999854321 12233339999999999999999988753110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
.....+++|.+++||++++++..+.+.+.++..+++.||+
T Consensus 276 ----------------------------------------~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~ 315 (524)
T PRK06188 276 ----------------------------------------RTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQ 315 (524)
T ss_pred ----------------------------------------cCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCc
Confidence 0012258999999999999998877777789999999999
Q ss_pred chhcccccccCCCC------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004961 480 TETCAGSTFSEWDD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 480 TE~~~~~~~~~~~~------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
||++..++...... ...+++|+|+|+++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+.+.|
T Consensus 316 tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~- 390 (524)
T PRK06188 316 TEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGRE---VAQGEVGEICVRGPLVMDGYWNRPEETAEAF- 390 (524)
T ss_pred cccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCC---CCCCCeeEEEEECcchhhhhcCChHHhhhhh-
Confidence 99976655443221 2457899999999999999 55554 4578999999999999999999999999888
Q ss_pred cCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcC
Q 004961 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (721)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~ 630 (721)
.+ |||+|||+|++++||+++|.||.+|+||+ +|++|+|.+||++|.+||+|.+++|++.+++ ..+++++++.
T Consensus 391 --~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 465 (524)
T PRK06188 391 --RD--GWLHTGDVAREDEDGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLR 465 (524)
T ss_pred --cC--CceeecceEEEcCCccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEEC
Confidence 66 89999999999999999999999999997 6999999999999999999999999998765 3688888876
Q ss_pred hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
++.. . -.++|+++++ .+++.|++|..|++++++ | +|++||++|++|++
T Consensus 466 ~~~~--------~-----------------~~~~l~~~~~-~~l~~~~~p~~i~~v~~~--P----~t~~gKi~r~~L~~ 513 (524)
T PRK06188 466 PGAA--------V-----------------DAAELQAHVK-ERKGSVHAPKQVDFVDSL--P----LTALGKPDKKALRA 513 (524)
T ss_pred CCCC--------C-----------------CHHHHHHHHH-HhcccCCCCcEEEEecCC--C----CCccccccHHHHHH
Confidence 5320 0 0267888888 899999999999999987 6 99999999999999
Q ss_pred HHHHH
Q 004961 711 KFKDD 715 (721)
Q Consensus 711 ~~~~~ 715 (721)
+|.+-
T Consensus 514 ~~~~~ 518 (524)
T PRK06188 514 RYWEG 518 (524)
T ss_pred HHHhh
Confidence 98653
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-64 Score=561.15 Aligned_cols=474 Identities=23% Similarity=0.308 Sum_probs=379.3
Q ss_pred HHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHH
Q 004961 89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW 168 (721)
Q Consensus 89 ~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~ 168 (721)
+.+++.+||++|+.... ++. .+||+|+.++++++|.+|.+.|+++||+|+|+++|+++|
T Consensus 2 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~ 60 (488)
T PRK09088 2 AFHARLQPQRLAAVDLA----------LGR-----------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL 60 (488)
T ss_pred chhhhhCCCceEEEecC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 45778999999987421 233 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCC
Q 004961 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248 (721)
Q Consensus 169 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 248 (721)
++++|||+++|++++|+++.++.+++.+++++++++++|+++...... .
T Consensus 61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~------------------------- 109 (488)
T PRK09088 61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------T------------------------- 109 (488)
T ss_pred HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------c-------------------------
Confidence 999999999999999999999999999999999999999986543210 0
Q ss_pred CceEeeHHHHHhcCCC-CCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChH
Q 004961 249 NWTVSSFSEVEKLGKR-SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~ 327 (721)
....++++...... .........++++++++|||||||.||+|++||+++...+..+.... .+..+|++++.+|++
T Consensus 110 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~ 186 (488)
T PRK09088 110 --DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMF 186 (488)
T ss_pred --cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchH
Confidence 00111111111100 01111234568899999999999999999999999998888777766 788999999999999
Q ss_pred HHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccc--eeecceEEeechHHHHHHHHHHHHHHHhhcchhHHH
Q 004961 328 HVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV--SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404 (721)
Q Consensus 328 h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l 404 (721)
|.+++.. ++.++..|+++++.+....... +..+ .++++|+++++|++++.+.++...
T Consensus 187 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~------------ 246 (488)
T PRK09088 187 HIIGLITSVRPVLAVGGSILVSNGFEPKRT--------LGRLGDPALGITHYFCVPQMAQAFRAQPGF------------ 246 (488)
T ss_pred HHHHHHHHHHHHHhcCCEEEEcCCCCHHHH--------HHHHHhhccCCcEEeeHHHHHHHHHhCcCc------------
Confidence 9999876 5567888999887443211111 1114 358899999999999887642100
Q ss_pred HHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcc
Q 004961 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484 (721)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~ 484 (721)
.....+++|.+++||++++....+.+... |+++++.||+||++.
T Consensus 247 -----------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~ 290 (488)
T PRK09088 247 -----------------------------------DAAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGT 290 (488)
T ss_pred -----------------------------------CccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeeccccccc
Confidence 00011489999999999999987776654 899999999999987
Q ss_pred cccccCC---CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcce
Q 004961 485 GSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (721)
Q Consensus 485 ~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw 561 (721)
+...... ...+.+++|+|+|+++++|+| +++.. ++.|+.|||+|+|++++.||+++++.|++.|. .+ ||
T Consensus 291 ~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~--~~--g~ 362 (488)
T PRK09088 291 VFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND---CPAGVPGELLLRGPNLSPGYWRRPQATARAFT--GD--GW 362 (488)
T ss_pred ccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC---CcCCCceEEEEECCccchhhcCChhhhhhhhc--CC--CC
Confidence 5433211 123458999999999999998 55554 45788999999999999999999999998885 45 89
Q ss_pred EeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHH
Q 004961 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWA 638 (721)
Q Consensus 562 ~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~ 638 (721)
|+|||+|++|++|.++|.||.||+||+ +|++|+|.+||++|.++|.|.+++|++.+++ +..+++|++.++.
T Consensus 363 ~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~----- 436 (488)
T PRK09088 363 FRTGDIARRDADGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA----- 436 (488)
T ss_pred eeecceEEEcCCCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC-----
Confidence 999999999999999999999999997 6999999999999999999999999998764 3577888876432
Q ss_pred HHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
.. -.+++.++++ .+|++|++|+.|.+++++ | +|++||++|++|++++.+
T Consensus 437 -----~~---------------~~~~l~~~~~-~~l~~~~~p~~i~~~~~i--P----~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 437 -----PL---------------DLERIRSHLS-TRLAKYKVPKHLRLVDAL--P----RTASGKLQKARLRDALAA 485 (488)
T ss_pred -----CC---------------CHHHHHHHHH-hhCcCCCCCCEEEEcccC--C----CCCCCceeHHHHHHHHHh
Confidence 00 0267888888 889999999999999988 6 999999999999998875
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=567.87 Aligned_cols=485 Identities=19% Similarity=0.270 Sum_probs=378.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH-NVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~Vai 160 (721)
.|+.++|.+++ +|+++|+++ ++. .+||+||.++++++|.+|.+.|+ ++||+|++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i 57 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV 57 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 57889998765 799999975 333 69999999999999999999999 89999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|+++++||+++|++++|++|.++.+++.+++++++++++|++++....+.+.. .+.++.++ ++..
T Consensus 58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i~-~~~~----- 129 (540)
T PRK13388 58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVLD-VDTP----- 129 (540)
T ss_pred ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEEE-ccch-----
Confidence 999999999999999999999999999999999999999999999999987765554431 23333332 2210
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.+.++...... ..+.....++++++|+|||||||.||||+++|+++...+......+ ++.++|++
T Consensus 130 -------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~ 194 (540)
T PRK13388 130 -------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVC 194 (540)
T ss_pred -------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEE
Confidence 12222211111 1111235679999999999999999999999999998888888888 89999999
Q ss_pred EeccChHHHHHHHHH-HHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~~~~-~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++.+|++|.+++... +.++..|+++++.+... ...++..++++++|++..+|+.+..+....... .
T Consensus 195 l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~-----~ 261 (540)
T PRK13388 195 YVSMPLFHSNAVMAGWAPAVASGAAVALPAKFS--------ASGFLDDVRRYGATYFNYVGKPLAYILATPERP-----D 261 (540)
T ss_pred EEeeCchhhcchHHHHHHHHHcCcEEEECCCCC--------HHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-----c
Confidence 999999999988764 45789999998743211 112233399999999999999988776421000 0
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~ 479 (721)
....+++.+ + |++++++..+.+.+.+++++++.||+
T Consensus 262 ------------------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~ 297 (540)
T PRK13388 262 ------------------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGS 297 (540)
T ss_pred ------------------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceeccccc
Confidence 000256643 3 56677788787877889999999999
Q ss_pred chhcccccccCCCCCCCCccCCCcCcceEE-----------EEecCCCCcccCCCCCCcceEEEc-cccccccccCCCcc
Q 004961 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIK-----------LVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK 547 (721)
Q Consensus 480 TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~-----------i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~~~~ 547 (721)
||++.+++... ....+++|+|++|+++. ++| ++|..+ ..++..|||+++ |++++.||+++|+.
T Consensus 298 tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~~~~ 372 (540)
T PRK13388 298 SEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNNPEA 372 (540)
T ss_pred ccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCChHH
Confidence 99987665332 23468999999997653 222 222221 134578999998 99999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEE
Q 004961 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~ 624 (721)
|++.| .+ |||+|||+|++|+||+++++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++
T Consensus 373 t~~~~---~~--g~~~TGD~~~~~~dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~ 446 (540)
T PRK13388 373 TAERM---RH--GMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVM 446 (540)
T ss_pred HHHHh---hc--CceeccceEEEcCCCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeE
Confidence 99998 66 89999999999999999999999999997 69999999999999999999999999987653 467
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHH-CCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA-AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 625 A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+++++.++. ..+ .++++++++. ..|++|++|..+++++++ | +|++||+
T Consensus 447 ~~v~~~~~~--------~~~-----------------~~~l~~~l~~~~~l~~~~~P~~~~~v~~i--P----~t~~GKv 495 (540)
T PRK13388 447 AALVLRDGA--------TFD-----------------PDAFAAFLAAQPDLGTKAWPRYVRIAADL--P----STATNKV 495 (540)
T ss_pred EEEEECCCC--------cCC-----------------HHHHHHHHHhhccCCcccCCcEEEEeccC--C----CCCccee
Confidence 777765432 000 1456666652 359999999999999998 6 9999999
Q ss_pred ChHHHHHHHH
Q 004961 704 KREQLKAKFK 713 (721)
Q Consensus 704 ~R~~l~~~~~ 713 (721)
+|++|+++..
T Consensus 496 ~R~~L~~~~~ 505 (540)
T PRK13388 496 LKRELIAQGW 505 (540)
T ss_pred eHHhHHHhcc
Confidence 9999998754
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=562.09 Aligned_cols=499 Identities=22% Similarity=0.278 Sum_probs=407.1
Q ss_pred CCHHHHHHHH-HHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 82 STMAALFEQS-CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~-a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+...+++.++ ++.+||++|++. ++. .+||.||.++++++|++|.+.|+++|++|++
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l 60 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVLL 60 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4567778877 677999999974 332 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++..+.++..+....
T Consensus 61 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (508)
T TIGR02262 61 LMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA--- 137 (508)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc---
Confidence 99999999999999999999999999999999999999999999999998887777776667777777776643211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH-HHhhCCCCCCCcE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIPNPGRSDV 319 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~d~ 319 (721)
....+.++...... ...+....++++++++|||||||.||||++||+++...+.. ....+ ++.++|+
T Consensus 138 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~ 205 (508)
T TIGR02262 138 ----------GEVQLAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDV 205 (508)
T ss_pred ----------ccccHHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCE
Confidence 11234444332211 11223445789999999999999999999999999987766 34455 8899999
Q ss_pred EEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+++.+|++|.+++.. ++.++..|+++++.+... . ...++..++++++|++.++|+++..+......
T Consensus 206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------ 272 (508)
T TIGR02262 206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGERP--T-----PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------ 272 (508)
T ss_pred EEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCC--C-----HHHHHHHHHHHCCcEEecchHHHHHHhcCccc------
Confidence 999999999999865 566789999998843221 1 12233448999999999999988876542100
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
+...++++|.+++||+++++++.+.|.+.+|+++++.||
T Consensus 273 -----------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG 311 (508)
T TIGR02262 273 -----------------------------------------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIG 311 (508)
T ss_pred -----------------------------------------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCcc
Confidence 000124899999999999999999999989999999999
Q ss_pred cchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCC
Q 004961 479 LTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g 558 (721)
+||++.+.+.....+...+++|+|+++++++|+| +++..+ ++|+.|||+++|+.++.||+++++.+++.| .+
T Consensus 312 ~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~---~~- 383 (508)
T TIGR02262 312 STEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDV---AAGEPGELLISGPSSATMYWNNRAKTRDTF---QG- 383 (508)
T ss_pred ccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCccccccCCCHHHhHhhh---hc-
Confidence 9999876655444444568999999999999999 666554 478999999999999999999999999988 66
Q ss_pred cceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHH
Q 004961 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALE 635 (721)
Q Consensus 559 ~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~ 635 (721)
+||+|||+++++++|.++|+||.||+||+. |++|+|.+||++|.++|+|.++++++.++. ..+++++++.++..
T Consensus 384 -~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~-G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 460 (508)
T TIGR02262 384 -EWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD- 460 (508)
T ss_pred -CceeccceEEEcCCccEEEeccccceeeeC-CEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc-
Confidence 899999999999999999999999999985 999999999999999999999999997654 35778888765320
Q ss_pred HHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
. .+.+.++|+++++ ++|++|++|..+++++++ | +|++||++|++|+++
T Consensus 461 -------~--------------~~~~~~~i~~~~~-~~l~~~~~p~~i~~~~~i--P----~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 461 -------I--------------DTALETELKEHVK-DRLAPYKYPRWIVFVDDL--P----KTATGKIQRFKLREG 508 (508)
T ss_pred -------c--------------ccccHHHHHHHHH-HhcccCCCCceEEEecCC--C----CCCCCcEehhhccCC
Confidence 0 0122467888888 889999999999999988 6 999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=561.68 Aligned_cols=491 Identities=21% Similarity=0.248 Sum_probs=393.8
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
++.+.|++.++.+|+++|+.. .+. .+||+||.+++.++|..|.+.|+++|++|+|++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~ 57 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG 57 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 478999999999999999975 333 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCC
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (721)
+|+.+|+++++||+++|++++|+++.++.+++.++++.++++.++++........ ... ++.++
T Consensus 58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~--------- 120 (502)
T TIGR01734 58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLS--------- 120 (502)
T ss_pred CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEch---------
Confidence 9999999999999999999999999999999999999999999999876532211 111 11110
Q ss_pred ccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEe
Q 004961 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322 (721)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~ 322 (721)
...++..... .........+++.++++|||||||.||+|+++|+++...+.+....+ .+..+++++.
T Consensus 121 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~ 187 (502)
T TIGR01734 121 -----------ALEQAETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLN 187 (502)
T ss_pred -----------HhhhhhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEe
Confidence 0111111111 11111334678999999999999999999999999999998888877 8899999999
Q ss_pred ccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhH
Q 004961 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402 (721)
Q Consensus 323 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 402 (721)
.+|++|.+++..++.++..|+++++.+.....+. ..++..+.++++|.+.++|++++.++.....
T Consensus 188 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~---------- 252 (502)
T TIGR01734 188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNF-----KLLFEELPKTGLNVWVSTPSFVDMCLLDPNF---------- 252 (502)
T ss_pred ecCceechhHHHHHHHHHCCCEEEEcCHHHhcCH-----HHHHHHHHHcCCeEEEEChhHHHHHHhcccc----------
Confidence 9999999999888899999999988554322222 2223338899999999999998876542100
Q ss_pred HHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccch
Q 004961 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTE 481 (721)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE 481 (721)
.....++++.++++|+++++++.+.+.+.+ ++++++.||+||
T Consensus 253 -------------------------------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE 295 (502)
T TIGR01734 253 -------------------------------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE 295 (502)
T ss_pred -------------------------------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence 001125899999999999999998888776 789999999999
Q ss_pred hcccccccCC-----CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 482 TCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 482 ~~~~~~~~~~-----~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
++..++.... ......++|+|.|+++++|+| +++.. +++|+.|||+|+|+.++.||+++++.|.+.|.. .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~ 370 (502)
T TIGR01734 296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEP---LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFS-H 370 (502)
T ss_pred ceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCC---CCCCCeeEEEEccccccccccCCcccchHhhee-C
Confidence 8765443221 122336899999999999999 45544 457899999999999999999999999988742 3
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecC--CC--ceEEEEEEcChH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP--FH--NYCVALVVPSHK 632 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~--~~--~~~~A~vv~~~~ 632 (721)
++.+||+|||+|++|++ +|+++||.||+||+ +|++|+|.+||+++.++|.|++|+|++.. +. ..++++|++...
T Consensus 371 ~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~ 448 (502)
T TIGR01734 371 EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETE 448 (502)
T ss_pred CCcEEEECCCEEEEECC-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccc
Confidence 44579999999999976 99999999999997 69999999999999999999999999853 22 368899988754
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
... ....+.+++++.++ ++|++|++|+.+++++++ | +|++||++|++|++++
T Consensus 449 ~~~---------------------~~~~~~~~i~~~~~-~~l~~~~~P~~~~~v~~l--P----~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 449 DFE---------------------KEFQLTKAIKKELK-KSLPAYMIPRKFIYRDQL--P----LTANGKIDRKALAEEV 500 (502)
T ss_pred ccc---------------------cchhhHHHHHHHHh-hhChhhcCCcEEEEcccc--C----CCCCCcccHHHHHHhh
Confidence 210 01123467888888 899999999999999988 6 9999999999999876
Q ss_pred H
Q 004961 713 K 713 (721)
Q Consensus 713 ~ 713 (721)
.
T Consensus 501 ~ 501 (502)
T TIGR01734 501 N 501 (502)
T ss_pred c
Confidence 4
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=566.06 Aligned_cols=513 Identities=22% Similarity=0.277 Sum_probs=397.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++.++|+++++.+|+++|+.+ .++ .+||+||.++++++|.+|.+.|+++|++|+++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~ 89 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF 89 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6899999999999999999975 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|+++++||+++|++++|++|.++.+++.++++.++++++++++...+.+.+..... .++.++..+........
T Consensus 90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~ 168 (567)
T PRK06178 90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE 168 (567)
T ss_pred CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence 99999999999999999999999999999999999999999999999998877776655443 34444443321110000
Q ss_pred CccCCCC-----CceEeeHHHHHhcCCC--CCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 242 GVSGGIS-----NWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 242 ~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
.....+. ......+.++...... .........++++|+|+|||||||.||||++||+|++..+.........+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~ 248 (567)
T PRK06178 169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG 248 (567)
T ss_pred cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence 0000000 0001112222221111 11112335679999999999999999999999999988766554432267
Q ss_pred CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 315 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
.++|++++++|++|.+|+.. ++.++..|+++++.+... +..++..++++++|.+.++|..+..+......
T Consensus 249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~--------~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~- 319 (567)
T PRK06178 249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWD--------AVAFMAAVERYRVTRTVMLVDNAVELMDHPRF- 319 (567)
T ss_pred CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCC--------HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCC-
Confidence 88999999999999999854 677899999999843211 12233349999999999999988877542100
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEE--ecCCCCCHHHHHHHHHhhCC
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI--CGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~--~gG~~l~~~~~~~~~~~~g~ 471 (721)
.....++++.+. +.|+++++++.+.++..+|.
T Consensus 320 ----------------------------------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 353 (567)
T PRK06178 320 ----------------------------------------------AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGS 353 (567)
T ss_pred ----------------------------------------------CCCCcchheeeeeccccccCCHHHHHHHHHHhCC
Confidence 000113566544 44689999999999988887
Q ss_pred ceec-ccccchhcccccccCC---C----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 472 PIGQ-AYGLTETCAGSTFSEW---D----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 472 ~l~~-~YG~TE~~~~~~~~~~---~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
.++. .||+||++..++.... . ...++++|+|+||++++|+|++++..+ +.|+.|||+|+|++++.||++
T Consensus 354 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~---~~g~~Gel~v~g~~v~~gY~~ 430 (567)
T PRK06178 354 VLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELL---PLGAEGEIVVRTPSLLKGYWN 430 (567)
T ss_pred cccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcC---CCCCceEEEEECCcccccccC
Confidence 7764 7999998765443221 1 123467999999999999996666654 478899999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+++.+.+.| .+ |||+|||+|++++||+++|+||+||+||+ +|++|+|.|||+++.++|+|.+++|++.+++
T Consensus 431 ~~~~~~~~~---~d--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g 504 (567)
T PRK06178 431 KPEATAEAL---RD--GWLHTGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKG 504 (567)
T ss_pred Chhhhhhcc---cC--CceeecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccC
Confidence 999999888 67 89999999999999999999999999997 6999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
+.++++|++.++.. . ..++|+++++ ++|+.|++|. +.+++++ | +|++
T Consensus 505 ~~~~~~v~~~~~~~--------~-----------------~~~~l~~~~~-~~l~~~~~p~-i~~v~~i--P----~t~~ 551 (567)
T PRK06178 505 QVPVAFVQLKPGAD--------L-----------------TAAALQAWCR-ENMAVYKVPE-IRIVDAL--P----MTAT 551 (567)
T ss_pred cceEEEEEeCCCCc--------C-----------------CHHHHHHHHH-hcCcccCCce-EEEeccC--C----CCCc
Confidence 35888888765320 0 0267888888 8999999996 7788877 6 9999
Q ss_pred cccChHHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKDD 715 (721)
Q Consensus 701 gKi~R~~l~~~~~~~ 715 (721)
||++|++|+++++++
T Consensus 552 GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 552 GKVRKQDLQALAEEL 566 (567)
T ss_pred cceeHHHHHHHHHhh
Confidence 999999999988763
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-64 Score=551.42 Aligned_cols=426 Identities=19% Similarity=0.221 Sum_probs=351.4
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE
Q 004961 130 WQTYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC 208 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~ 208 (721)
-+.|+||.++++++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 37999999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred CccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCC
Q 004961 209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288 (721)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG 288 (721)
+.+..... .. . . .. ......++++++++|||||||
T Consensus 99 ~~~~~~~~---------------~~-----~----------~-------------~~--~~~~~~~~~~~~i~~TSGTTG 133 (452)
T PRK07445 99 LDQLKLSH---------------PP-----P----------L-------------PS--QGILPNLETGWIMIPTGGSSG 133 (452)
T ss_pred cCcccccc---------------CC-----C----------C-------------Cc--cccCCCCCCcEEEEeCCCCCC
Confidence 76532100 00 0 0 00 011235689999999999999
Q ss_pred CcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccc
Q 004961 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368 (721)
Q Consensus 289 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i 368 (721)
.||||++||+++++.+......+ .+.+ ++.++.+|++|.+|+...+.+++.|+++++.+...+... ....
T Consensus 134 ~PKgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~ 203 (452)
T PRK07445 134 QIRFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELP 203 (452)
T ss_pred CCcEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhh
Confidence 99999999999998888877766 6654 467889999999999888889999999988653222211 0113
Q ss_pred eeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEE
Q 004961 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448 (721)
Q Consensus 369 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 448 (721)
..+++|+++++|++++.+.+.... ..+++|
T Consensus 204 ~~~~~t~~~~vP~~l~~l~~~~~~--------------------------------------------------~l~~l~ 233 (452)
T PRK07445 204 PNPSDFFLSLVPTQLQRLLQLRPQ--------------------------------------------------WLAQFR 233 (452)
T ss_pred hhcCceEEEehHHHHHHHHhhChh--------------------------------------------------hhhcce
Confidence 467899999999999988651000 014899
Q ss_pred EEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCC
Q 004961 449 FMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526 (721)
Q Consensus 449 ~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~ 526 (721)
.+++||+++++++.+.++. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|+ +|+
T Consensus 234 ~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~------------~g~ 300 (452)
T PRK07445 234 TILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQ 300 (452)
T ss_pred EEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc------------CCC
Confidence 9999999999999888875 5899999999999986554433322 234789999999999997 236
Q ss_pred cceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcC
Q 004961 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS 606 (721)
Q Consensus 527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~ 606 (721)
.|||+|+|++++.||++++.. .+ |||+|||+|++|+||+|+|.||.||+||+ +|++|+|.|||++|.+|
T Consensus 301 ~Gel~v~g~~~~~gY~~~~~~--------~~--g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 301 TGNITIQAQSLALGYYPQILD--------SQ--GIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILAT 369 (452)
T ss_pred cceEEEeCCccchhhcCCccC--------CC--CEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhC
Confidence 799999999999999986431 34 89999999999999999999999999996 69999999999999999
Q ss_pred cccceEEEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEE
Q 004961 607 DYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKI 683 (721)
Q Consensus 607 p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i 683 (721)
|+|.+|+|++.+++. .++|++++.++.. + .++++++++ ++|++|++|+.+
T Consensus 370 p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~---------~-----------------~~~l~~~~~-~~L~~~~~P~~i 422 (452)
T PRK07445 370 GLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI---------S-----------------LEELKTAIK-DQLSPFKQPKHW 422 (452)
T ss_pred CCcceEEEEeccCcCCCcEEEEEEEeCCCCC---------C-----------------HHHHHHHHH-HhCCcccCCeEE
Confidence 999999999988753 5889988764320 0 257888888 899999999999
Q ss_pred EeeCCCCCCCCCccCcccccChHHHHHHHHHHHH
Q 004961 684 KLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 684 ~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~ 717 (721)
++++++ | +|++||++|++|++.+.++|+
T Consensus 423 ~~v~~l--P----~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 423 IPVPQL--P----RNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred EEecCC--C----CCCCcccCHHHHHHHHHHhhC
Confidence 999988 6 999999999999999999875
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=563.35 Aligned_cols=514 Identities=21% Similarity=0.253 Sum_probs=392.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++..+|.+.++.+|+++|+.+ ++. .+||+||.++++++|..|.+.|+++||+|+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~ 76 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI 76 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5789999999999999999975 322 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCC-------CceEEEEecC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-------TIKNVIYFEN 234 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~ii~~~~ 234 (721)
++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|+++...+....+...+. ....++.++.
T Consensus 77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (567)
T PLN02479 77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD 156 (567)
T ss_pred CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence 999999999999999999999999999999999999999999999999887655544332211 1123344332
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
..... ...... .......++++................++.++++|||||||.||||++||+++..........+ .+
T Consensus 157 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 233 (567)
T PLN02479 157 PTCDP-KSLQYA-LGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GM 233 (567)
T ss_pred CcCCc-cccccc-cccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CC
Confidence 21100 000000 0112345666654322111111222345678899999999999999999999887666555566 78
Q ss_pred CCCcEEEeccChHHHHHHHHHHH-HHHhcceEee--CccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 315 GRSDVYLAYLPLAHVLELAAESI-MLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 315 ~~~d~~l~~~pl~h~~g~~~~~~-~l~~G~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
.+++++++.+|++|.+++...+. .+..|+++++ +++..+ +..++++++|++.++|++++.+.+...
T Consensus 234 ~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~l~~~~~t~~~~~P~~~~~l~~~~~ 302 (567)
T PLN02479 234 NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAI-----------YSAIANYGVTHFCAAPVVLNTIVNAPK 302 (567)
T ss_pred CCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHH-----------HHHHHHcCCeEEEecHHHHHHHHhhhh
Confidence 89999999999999999766444 4556666555 233333 334999999999999999998875321
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
... ....++++.++++|+++++.+.+.+.+. +.
T Consensus 303 ~~~----------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~ 335 (567)
T PLN02479 303 SET----------------------------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GF 335 (567)
T ss_pred hcc----------------------------------------------cccccceeEEEEcCCCCCHHHHHHHHhc-CC
Confidence 000 0011478999999999999999888775 89
Q ss_pred ceecccccchhcccccccCC----C------CCC-CCccCCCcCcce-EEEEecCCCCcccCCCCCCcceEEEccccccc
Q 004961 472 PIGQAYGLTETCAGSTFSEW----D------DPS-VGRVGPPVPCCY-IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (721)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~----~------~~~-~~~vG~p~p~~~-v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~ 539 (721)
++++.||+||+++.++.... . ... ..++|.+.++++ ++|+|++++..++ .+.+++|||+++|++++.
T Consensus 336 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~-~~g~~~GEl~v~g~~~~~ 414 (567)
T PLN02479 336 RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP-ADGKTMGEIVMRGNMVMK 414 (567)
T ss_pred ceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccC-CCCCCceEEEEeccchhh
Confidence 99999999998654332210 0 001 146788888886 8999865565543 111257999999999999
Q ss_pred cccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC
Q 004961 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (721)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~ 619 (721)
|||++|+.|.+.| .+ |||+|||+|++|++|+++|+||.||+||+ +|++|+|.|||++|.+||.|.+++|++.++
T Consensus 415 GY~~~~~~t~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~ 488 (567)
T PLN02479 415 GYLKNPKANEEAF---AN--GWFHSGDLGVKHPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPD 488 (567)
T ss_pred hhhcCcccccchh---cC--CceecceeEEEcCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccc
Confidence 9999999999999 56 89999999999999999999999999997 699999999999999999999999999876
Q ss_pred C---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCc
Q 004961 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGL 696 (721)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~ 696 (721)
. ..+++++++.++.. .+ ..+...++|+++++ .+||.|++|+.+++ .++ |
T Consensus 489 ~~~~~~~~~~v~~~~~~~----------~~----------~~~~~~~~l~~~~~-~~l~~~~~P~~~~~-~~i--P---- 540 (567)
T PLN02479 489 ERWGESPCAFVTLKPGVD----------KS----------DEAALAEDIMKFCR-ERLPAYWVPKSVVF-GPL--P---- 540 (567)
T ss_pred hhcCceeEEEEEecCccc----------cc----------chhhhHHHHHHHHH-hhcccccCCceEEe-ccC--C----
Confidence 5 36889998775420 00 01223467888888 89999999999887 444 6
Q ss_pred cCcccccChHHHHHHHHH
Q 004961 697 VTAALKIKREQLKAKFKD 714 (721)
Q Consensus 697 ~t~~gKi~R~~l~~~~~~ 714 (721)
+|++||++|++|++.+++
T Consensus 541 ~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 541 KTATGKIQKHVLRAKAKE 558 (567)
T ss_pred CCCccCeeHHHHHHHHHh
Confidence 999999999999988765
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=564.65 Aligned_cols=510 Identities=23% Similarity=0.306 Sum_probs=397.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|.++++++|+++|+++ ++. .+||+||.++++++|+.|.+.|+++||+|++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i 78 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVAI 78 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 47899999999999999999986 332 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+....... ..+.++..........
T Consensus 79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (557)
T PRK07059 79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGF 157 (557)
T ss_pred ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEecccccccc
Confidence 999999999999999999999999999999999999999999999999887666555544332 2333333221100000
Q ss_pred -------------CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH
Q 004961 241 -------------SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (721)
Q Consensus 241 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (721)
.....+ .......++++...............++++|+|+|||||||.||||+++|++++.++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~ 236 (557)
T PRK07059 158 KGHIVNFVVRRVKKMVPAW-SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM 236 (557)
T ss_pred ccccccccccccccccccc-CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHH
Confidence 000000 011223455555443322222345678999999999999999999999999998776544
Q ss_pred HhhCC---CC---CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeech
Q 004961 308 KTLIP---NP---GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (721)
Q Consensus 308 ~~~~~---~~---~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 380 (721)
...+. .. .....+++.+|++|.+++.. .+.++..|++.++.+... + ...++..++++++|.+.++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-----~~~~~~~i~~~~vt~~~~~p 309 (557)
T PRK07059 237 EAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPR--D-----IPGFIKELKKYQVHIFPAVN 309 (557)
T ss_pred hhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCc--C-----HHHHHHHHHHhCCeeeecCH
Confidence 33220 11 12457888999999988754 556778888876633110 1 11223338999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHH
Q 004961 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (721)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~ 460 (721)
+++..+...... .....+++|.++.||+++++.
T Consensus 310 ~~~~~l~~~~~~-----------------------------------------------~~~~~~~l~~~~~gg~~~~~~ 342 (557)
T PRK07059 310 TLYNALLNNPDF-----------------------------------------------DKLDFSKLIVANGGGMAVQRP 342 (557)
T ss_pred HHHHHHHcCcCc-----------------------------------------------CcCCchhheEEEeccccCCHH
Confidence 999988652100 000114789999999999999
Q ss_pred HHHHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccc
Q 004961 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (721)
Q Consensus 461 ~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~ 539 (721)
+.+.+.+.+|+++++.||+||++.+++...... ...+++|+|+++++++|+| +++.. +++|+.|||+++|+.++.
T Consensus 343 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~ 418 (557)
T PRK07059 343 VAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGND---LPLGEPGEICIRGPQVMA 418 (557)
T ss_pred HHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccch
Confidence 999888888999999999999988766544322 2357999999999999998 56654 458899999999999999
Q ss_pred cccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC
Q 004961 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (721)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~ 619 (721)
||+++++.|.+.|. .+ |||+|||+|++++||+++++||++|+||+ +|++|+|.+||+++.+||+|.+++|++.++
T Consensus 419 gY~~~~~~~~~~~~--~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~ 493 (557)
T PRK07059 419 GYWNRPDETAKVMT--AD--GFFRTGDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPD 493 (557)
T ss_pred hhhcCHHHHhhhcc--cC--CceecCcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEeccc
Confidence 99999999998885 56 89999999999999999999999999997 599999999999999999999999999765
Q ss_pred C---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCc
Q 004961 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGL 696 (721)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~ 696 (721)
. +.++++|+...... + .++++++++ ++|+.|++|..|.+++++ |
T Consensus 494 ~~~ge~~~~~v~~~~~~~---------~-----------------~~~l~~~~~-~~l~~~~~P~~i~~v~~~--P---- 540 (557)
T PRK07059 494 EHSGEAVKLFVVKKDPAL---------T-----------------EEDVKAFCK-ERLTNYKRPKFVEFRTEL--P---- 540 (557)
T ss_pred CCCCeeEEEEEEeCCCCC---------C-----------------HHHHHHHHH-HhcccccCCcEEEEeccC--C----
Confidence 4 35788887653210 0 257888888 889999999999999988 6
Q ss_pred cCcccccChHHHHHH
Q 004961 697 VTAALKIKREQLKAK 711 (721)
Q Consensus 697 ~t~~gKi~R~~l~~~ 711 (721)
+|++||++|+.|+++
T Consensus 541 ~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 541 KTNVGKILRRELRDG 555 (557)
T ss_pred CCcccceeHHHHHhh
Confidence 999999999999864
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-63 Score=558.67 Aligned_cols=509 Identities=25% Similarity=0.334 Sum_probs=392.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++|+++|+.+ +++ .+||.||.++++++|.+|.+.|+++||+|++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i 76 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL 76 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999975 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc--hhHHHhhhccCCCceEEEEecCCCCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++.+|+++.. .+.+.+.... ..+..++..+.....
T Consensus 77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (541)
T TIGR03205 77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG 155 (541)
T ss_pred ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence 9999999999999999999999999999999999999999999999998642 1222221111 113344443322110
Q ss_pred c-cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC----CC
Q 004961 239 K-DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----PN 313 (721)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----~~ 313 (721)
. ..............+++++...... ........++++++++|||||||.||||+++|+++.+......... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 234 (541)
T TIGR03205 156 KVGTPQAPIPADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRAT 234 (541)
T ss_pred cccccccccCCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhccccccc
Confidence 0 0000001112334566666543221 1112345678999999999999999999999999886554321110 02
Q ss_pred CCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 392 (721)
....+++++.+|++|.+++.. ++.++..|+++++.+... ...++..++++++|++.++|+++..+.+....
T Consensus 235 ~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 306 (541)
T TIGR03205 235 RGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFD--------VAAVFRDIEEKRATVFPGVPTMWIALANDPSL 306 (541)
T ss_pred CCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCC--------HHHHHHHHHHcCCeEeechHHHHHHHHhCccc
Confidence 234579999999999998766 566788999887743211 12233339999999999999999887642100
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCc
Q 004961 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472 (721)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~ 472 (721)
+....+++|.+++||+++++++.+++.+.++.+
T Consensus 307 -----------------------------------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~ 339 (541)
T TIGR03205 307 -----------------------------------------------EKRDLSSLATIGSGGAPLPVEVANFFERKTGLK 339 (541)
T ss_pred -----------------------------------------------cccCccccceEEEccccCCHHHHHHHHHHhCCC
Confidence 000124799999999999999999998888999
Q ss_pred eecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecC-CCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004961 473 IGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWD-EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 473 l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~-~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
+++.||+||++..++..... ....+++|+|+++++++|++.+ ++.. +++|+.|||+++|++++.||+++|+.|++
T Consensus 340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 416 (541)
T TIGR03205 340 LKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKV---LPPGEVGELRIRGPNVTRGYWNRPEESAE 416 (541)
T ss_pred eecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCcc---CCCCCeeEEEEecCCccccccCChhhhHh
Confidence 99999999998776654332 2345789999999999987643 3333 45788999999999999999999999999
Q ss_pred ccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEE
Q 004961 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALV 627 (721)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~v 627 (721)
.| .+ +||+|||+++++++|+++|+||.||+||+ +|++|+|.+||+++.+|++|.+++|++.+++ +.+++++
T Consensus 417 ~~---~~--~~~~TGD~~~~~~~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 490 (541)
T TIGR03205 417 AF---VG--DRFLTGDIGYMDTDGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFV 490 (541)
T ss_pred hh---cc--CCcccCceEEEcCCceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEE
Confidence 98 56 79999999999999999999999999996 6999999999999999999999999998755 3588888
Q ss_pred EcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHH
Q 004961 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 628 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~ 707 (721)
++.++.. ..+ .++++++++ ++|++|++|+.|++++++ | +|++||++|++
T Consensus 491 ~~~~~~~-------~~~-----------------~~~l~~~~~-~~l~~~~~P~~i~~~~~i--P----~t~~gK~~r~~ 539 (541)
T TIGR03205 491 KLRPGAK-------PFS-----------------LDELRAFLA-GKLGKHELPVAVEFVDEL--P----RTPVGKLSRHE 539 (541)
T ss_pred EECCCCC-------cCC-----------------HHHHHHHHH-hhcccccCCcEEEEeccC--C----CCcccceeHhh
Confidence 8764320 000 256778887 899999999999999988 6 99999999998
Q ss_pred HH
Q 004961 708 LK 709 (721)
Q Consensus 708 l~ 709 (721)
|+
T Consensus 540 l~ 541 (541)
T TIGR03205 540 LR 541 (541)
T ss_pred cC
Confidence 74
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=558.66 Aligned_cols=487 Identities=20% Similarity=0.267 Sum_probs=376.0
Q ss_pred HHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHH
Q 004961 90 QSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF 169 (721)
Q Consensus 90 ~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~ 169 (721)
.+|+++|+++|+.+.+ ++ +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++
T Consensus 5 ~~a~~~p~~~a~~~~~----------~~-----------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~ 63 (501)
T PRK13390 5 THAQIAPDRPAVIVAE----------TG-----------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL 63 (501)
T ss_pred hhhhhCCCCcEEEecC----------CC-----------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 4678899999997531 23 37999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCC
Q 004961 170 IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249 (721)
Q Consensus 170 ~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 249 (721)
+++|||+++|++++|+++.++++++.+++++++++++++++............. ...+.+....
T Consensus 64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~------------- 127 (501)
T PRK13390 64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADL---PLRLSFGGEI------------- 127 (501)
T ss_pred HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc---ceEEEecCcc-------------
Confidence 999999999999999999999999999999999999999876543332221111 1122221110
Q ss_pred ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeee--ccHHHHHHHH----HHHhhCCCCCCCcEEEec
Q 004961 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVATAA----AIKTLIPNPGRSDVYLAY 323 (721)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~--sh~~l~~~~~----~~~~~~~~~~~~d~~l~~ 323 (721)
....++++..... . +.....++.++|+|||||||.||||++ +|+++..... .....+ .+..+|++++.
T Consensus 128 ~~~~~~~~~~~~~--~---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 201 (501)
T PRK13390 128 DGFGSFEAALAGA--G---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSS 201 (501)
T ss_pred cccccHHHHhccc--C---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEec
Confidence 0112333332211 0 111122357999999999999999995 5666554321 122345 78889999999
Q ss_pred cChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHH
Q 004961 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN 403 (721)
Q Consensus 324 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 403 (721)
+|++|.+++......+..|+++++.+... +..++..++++++|++.++|+++..+.+......
T Consensus 202 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------- 264 (501)
T PRK13390 202 APIYHAAPLRWCSMVHALGGTVVLAKRFD--------AQATLGHVERYRITVTQMVPTMFVRLLKLDADVR--------- 264 (501)
T ss_pred ccchhhhHHHHHHHHHhcCceEEEcCCcC--------HHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc---------
Confidence 99999998866555677899998743211 1223344999999999999999998865211000
Q ss_pred HHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhc
Q 004961 404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483 (721)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~ 483 (721)
+....+++|.+++||+++++++.+.+++.+|.++++.||+||++
T Consensus 265 ------------------------------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 308 (501)
T PRK13390 265 ------------------------------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH 308 (501)
T ss_pred ------------------------------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccC
Confidence 00011478999999999999999999988899999999999998
Q ss_pred ccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceE
Q 004961 484 AGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562 (721)
Q Consensus 484 ~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~ 562 (721)
.++...... ....+++|+|+++ .++|+| +++.. +++|+.|||+|+|++++.||+++|+.|.+.|....+ +|+
T Consensus 309 ~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~--~w~ 381 (501)
T PRK13390 309 GMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNE---LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHP--FWT 381 (501)
T ss_pred ceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecCCccccccCChhhhHHhhccCCC--ceE
Confidence 655433322 2345799999999 799998 56654 458899999999999999999999999998852224 899
Q ss_pred eeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHH
Q 004961 563 YTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAH 639 (721)
Q Consensus 563 ~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~ 639 (721)
+|||+|++|+||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++++|++.++.
T Consensus 382 ~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~------ 454 (501)
T PRK13390 382 TVGDLGSVDEDGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI------ 454 (501)
T ss_pred EcCceEEECCCCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC------
Confidence 99999999999999999999999997 5999999999999999999999999998865 3588888766431
Q ss_pred HhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 640 EASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
.. .+...++|+++++ .+|+.|++|..+++++++ | +|++||++|++|+
T Consensus 455 ----~~------------~~~~~~~l~~~~~-~~l~~~~~P~~~~~~~~i--P----~t~~GKi~r~~L~ 501 (501)
T PRK13390 455 ----RG------------SDELARELIDYTR-SRIAHYKAPRSVEFVDEL--P----RTPTGKLVKGLLR 501 (501)
T ss_pred ----Cc------------chhhHHHHHHHHH-HhcccCCCCcEEEEeccC--C----CCCccceehhhcC
Confidence 00 0112367888888 889999999999999998 6 9999999999874
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=564.41 Aligned_cols=508 Identities=23% Similarity=0.316 Sum_probs=397.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~Va 159 (721)
..++.++|.++++++|+++|++. +++ .+||+||.++++++|..|. +.|+++||+|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~ 80 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVA 80 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 46899999999999999999975 343 6999999999999999996 68999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++++.....+.......+ ...++..+......
T Consensus 81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (560)
T PRK08751 81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG 159 (560)
T ss_pred EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence 99999999999999999999999999999999999999999999999999877666655544443 23333322100000
Q ss_pred --------------cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHH
Q 004961 240 --------------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305 (721)
Q Consensus 240 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~ 305 (721)
....... .......+.+................++++++++|||||||.||||++||+++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~ 238 (560)
T PRK08751 160 FPKAALVNFVVKYVKKLVPEY-RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQ 238 (560)
T ss_pred cccchhhhhhhhhhhcccccc-CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHH
Confidence 0000000 0012234555544333222223445678999999999999999999999999988877
Q ss_pred HHHhhCCC----CCC-CcEEEeccChHHHHHHHH-HHHHHHhcceEeeC-ccccccccchhhccCccccceeecceEEee
Q 004961 306 AIKTLIPN----PGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378 (721)
Q Consensus 306 ~~~~~~~~----~~~-~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 378 (721)
.....+ . +.+ ++++++.+|++|.+++.. .+.++..|++.++. ++... ..++..++++++|++.+
T Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~ 309 (560)
T PRK08751 239 QAHQWL-AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDM--------PGFVKELKKTRFTAFTG 309 (560)
T ss_pred HHHHhh-ccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCH--------HHHHHHHHhcceeEecC
Confidence 665544 2 333 467888999999999865 45667777776652 22211 12333489999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCC
Q 004961 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458 (721)
Q Consensus 379 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~ 458 (721)
+|.++..+.+.... .....+++|.+++||++++
T Consensus 310 ~p~~~~~l~~~~~~-----------------------------------------------~~~~l~~lr~v~~gG~~~~ 342 (560)
T PRK08751 310 VNTLFNGLLNTPGF-----------------------------------------------DQIDFSSLKMTLGGGMAVQ 342 (560)
T ss_pred hHHHHHHHHcCcCc-----------------------------------------------CCcchhhheeeeeCCCCCC
Confidence 99999887652100 0001147999999999999
Q ss_pred HHHHHHHHHhhCCceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccc
Q 004961 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNV 537 (721)
Q Consensus 459 ~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v 537 (721)
+++.+.+++.+|+++++.||+||++..++..... ....+++|.|+++++++|+| +++..+ +.|+.|||+|+|+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~~~~~ 418 (560)
T PRK08751 343 RSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVL---AIGEIGELCIKGPQV 418 (560)
T ss_pred HHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCcc
Confidence 9999999998899999999999998766554332 23347899999999999999 666554 478899999999999
Q ss_pred cccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEec
Q 004961 538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD 617 (721)
Q Consensus 538 ~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~ 617 (721)
+.||+++++.|.+.|. .+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|..||+|.+|+|++.
T Consensus 419 ~~gy~~~~~~~~~~~~--~~--g~~~TGD~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~ 493 (560)
T PRK08751 419 MKGYWKRPEETAKVMD--AD--GWLHTGDIARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGV 493 (560)
T ss_pred chhhcCChhhhhhccc--cC--CCccccceEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEec
Confidence 9999999999998885 45 89999999999999999999999999997 5999999999999999999999999998
Q ss_pred CCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCC
Q 004961 618 PFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEA 694 (721)
Q Consensus 618 ~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~ 694 (721)
++.. .++++++..... .+ .+++++.++ .+|+.|++|+.+++++++ |
T Consensus 494 ~~~~~ge~~~~~v~~~~~~---------~~-----------------~~~l~~~~~-~~l~~~~~P~~v~~v~~l--P-- 542 (560)
T PRK08751 494 PDEKSGEIVKVVIVKKDPA---------LT-----------------AEDVKAHAR-ANLTGYKQPRIIEFRKEL--P-- 542 (560)
T ss_pred CCCCCCceEEEEEEcCCCC---------CC-----------------HHHHHHHHH-HhhhhccCCeEEEEhhhC--C--
Confidence 7653 466666654211 00 256777887 889999999999999988 6
Q ss_pred CccCcccccChHHHHHH
Q 004961 695 GLVTAALKIKREQLKAK 711 (721)
Q Consensus 695 ~~~t~~gKi~R~~l~~~ 711 (721)
+|++||++|++|++.
T Consensus 543 --~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 543 --KTNVGKILRRELRDA 557 (560)
T ss_pred --CCccccccHHHHHHh
Confidence 999999999999875
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=562.56 Aligned_cols=514 Identities=26% Similarity=0.346 Sum_probs=394.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
.+++.++|++.++++|+++|+++ +++ .+||+||.+++.++|++|.+.|+++||+|++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i 79 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAI 79 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCC--CC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG--SE 238 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~--~~ 238 (721)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++++++.....+....... ....++...... ..
T Consensus 80 ~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (563)
T PRK06710 80 MLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-KIEHVIVTRIADFLPF 158 (563)
T ss_pred ECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-ccceeEEecccccccc
Confidence 999999999999999999999999999999999999999999999999886655443332211 122222211000 00
Q ss_pred ccC------------CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH
Q 004961 239 KDS------------GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (721)
Q Consensus 239 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (721)
... .............|+.+.... ..........++++++++|||||||.||||++||+++......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~ 237 (563)
T PRK06710 159 PKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237 (563)
T ss_pred ccccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHH
Confidence 000 000000000001122221111 1111111224578999999999999999999999999865443
Q ss_pred HHhhCCCC-CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHH
Q 004961 307 IKTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (721)
Q Consensus 307 ~~~~~~~~-~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~ 384 (721)
....+... ..++++++.+|++|.+++.. ++.+++.|+++++.++... ..++..++++++|++.++|+++.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~ 309 (563)
T PRK06710 238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDM--------KMVFEAIKKHKVTLFPGAPTIYI 309 (563)
T ss_pred HHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCH--------HHHHHHHHHcCCeEEeccHHHHH
Confidence 33322133 34568899999999999865 5567889999988543211 12333499999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHH
Q 004961 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (721)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~ 464 (721)
.+.+.... +....+++|.+++||+++++++.++
T Consensus 310 ~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gg~~~~~~~~~~ 342 (563)
T PRK06710 310 ALLNSPLL-----------------------------------------------KEYDISSIRACISGSAPLPVEVQEK 342 (563)
T ss_pred HHHcCCcc-----------------------------------------------ccCChhhhhheeeCCCcCCHHHHHH
Confidence 87642100 0001147899999999999999999
Q ss_pred HHHhhCCceecccccchhcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 465 INICMGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 465 ~~~~~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
+.+.+|+++++.||+||++.++..... .....+++|+|.+++.++|+|++++.. ++.|+.|||+++|+.++.||++
T Consensus 343 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~---~~~g~~Gel~v~g~~~~~gY~~ 419 (563)
T PRK06710 343 FETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA---LPPGEIGEIVVKGPQIMKGYWN 419 (563)
T ss_pred HHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCcc---CCCCCceEEEEecCccchhhhC
Confidence 998889999999999999876543322 223457899999999999999666654 4578899999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+++.|...| .+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++.
T Consensus 420 ~~~~~~~~~---~~--g~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g 493 (563)
T PRK06710 420 KPEETAAVL---QD--GWLHTGDVGYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRG 493 (563)
T ss_pred ChHHHhhhc---cc--CcccccceEEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcC
Confidence 999999888 66 89999999999999999999999999997 5999999999999999999999999998764
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
..++++|++.++.. . ..++++++++ ++|+.|++|..+++++++ | +|++
T Consensus 494 ~~~~~~v~~~~~~~----------~---------------~~~~l~~~~~-~~l~~~~~P~~~~~v~~i--P----~t~~ 541 (563)
T PRK06710 494 ETVKAFVVLKEGTE----------C---------------SEEELNQFAR-KYLAAYKVPKVYEFRDEL--P----KTTV 541 (563)
T ss_pred ceeEEEEEECCCCC----------C---------------CHHHHHHHHH-HhcccccCCcEEEEcccC--C----CCcc
Confidence 35888888765320 0 0257888888 889999999999999988 6 9999
Q ss_pred cccChHHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKDD 715 (721)
Q Consensus 701 gKi~R~~l~~~~~~~ 715 (721)
||++|++|++++..+
T Consensus 542 GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 542 GKILRRVLIEEEKRK 556 (563)
T ss_pred chhhHHHHHHHHhhc
Confidence 999999999988754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-63 Score=603.70 Aligned_cols=499 Identities=20% Similarity=0.207 Sum_probs=389.6
Q ss_pred CCCHHHHHHHHHHhCCC-CCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 81 ASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
..++.+.|.++++++|+ +.|+.+. ++ +++||+||.++++++|+.|++ |+++||+|+
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~ 686 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDP-----------VN-----------GPLTYRKLLTGAFVLGRKLKK-NTPPGENVG 686 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECC-----------CC-----------CccCHHHHHHHHHHHHHHHHh-cCCCCCeEE
Confidence 47899999999999975 5665421 22 369999999999999999975 999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHH--HhhhccCCCceEEEEecCCCC
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGS 237 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~~ 237 (721)
++++|+++++++++||+++|++++|+|++++.+++.+++++++++++|++++..+.. ......++....++.+++...
T Consensus 687 i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 766 (1140)
T PRK06814 687 VMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRA 766 (1140)
T ss_pred EEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhc
Confidence 999999999999999999999999999999999999999999999999997654322 122222333334444442210
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCC
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (721)
.. .....+++....... ........++|+++|+|||||||.||||++||+++.+.+......+ ++.++
T Consensus 767 ~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~ 834 (1140)
T PRK06814 767 QI----------GLADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPE 834 (1140)
T ss_pred cC----------ChHHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCCc
Confidence 00 000011111111111 0011135789999999999999999999999999999988888887 89999
Q ss_pred cEEEeccChHHHHHHH-HHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHh
Q 004961 318 DVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
|++++.+|++|.+++. ..+.++..|+++++.+...-. ......++++++|++..+|++++.+.+...
T Consensus 835 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~-------~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----- 902 (1140)
T PRK06814 835 DKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHY-------RIIPELIYDTNATILFGTDTFLNGYARYAH----- 902 (1140)
T ss_pred CEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccH-------HHHHHHHHhcCCEEEEecHHHHHHHHhhcc-----
Confidence 9999999999999984 467789999999874321100 111223889999999999999988754210
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecc
Q 004961 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~ 476 (721)
....+++|.+++||+++++++.+.+.+.+|++++|.
T Consensus 903 --------------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~ 938 (1140)
T PRK06814 903 --------------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEG 938 (1140)
T ss_pred --------------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEec
Confidence 001248999999999999999999998899999999
Q ss_pred cccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
||+||++..++.......+.+++|+|+|++++++++.+ + .++.|||+++|++++.||+++++.+. +....
T Consensus 939 YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~-~-------~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~~~ 1008 (1140)
T PRK06814 939 YGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP-G-------IDEGGRLFVRGPNVMLGYLRAENPGV--LEPPA 1008 (1140)
T ss_pred cccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC-C-------CCCceEEEEeCCCcchhhcCCCCCCc--cccCC
Confidence 99999988766555444566899999999999998732 1 34789999999999999999875432 21113
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~ 633 (721)
+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||+++.+|+.|.+++|++.+++. .+++++...+..
T Consensus 1009 ~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~ 1085 (1140)
T PRK06814 1009 D--GWYDTGDIVTIDEEGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDAT 1085 (1140)
T ss_pred C--CeEecCCEEEECCCCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcC
Confidence 4 89999999999999999999999999997 69999999999999999999999999988653 455554422110
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
.+++++++++.++++|++|+.+++++++ | +|++||++|++|+++++
T Consensus 1086 ----------------------------~~~l~~~~~~~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~ 1131 (1140)
T PRK06814 1086 ----------------------------RAAFLAHAKAAGASELMVPAEIITIDEI--P----LLGTGKIDYVAVTKLAE 1131 (1140)
T ss_pred ----------------------------HHHHHHHHHHcCCCcccCCcEEEEecCc--C----CCCCCCCcHHHHHHHHH
Confidence 2567778874569999999999999998 6 99999999999999988
Q ss_pred HHHH
Q 004961 714 DDLQ 717 (721)
Q Consensus 714 ~~i~ 717 (721)
+...
T Consensus 1132 ~~~~ 1135 (1140)
T PRK06814 1132 EAAA 1135 (1140)
T ss_pred Hhhc
Confidence 7654
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=590.93 Aligned_cols=518 Identities=19% Similarity=0.208 Sum_probs=384.7
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|+.. ++.+.+++..++..+.++.... . ....|+.++|+++++++||++|+++ +++
T Consensus 417 ~~~~---~~~~~~~~~~~~~~~~~~~~~~---~---~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~---- 471 (994)
T PRK07868 417 ANRS---VRTLAVETARTLPRLARLGQIN---D---HTRISLGRIIAEQARDAPKGEFLLF------------DGR---- 471 (994)
T ss_pred hhhh---hHHHHHHHHHhhhhHHHhhhcC---C---CCCccHHHHHHHHHHHCCCCeEEEe------------CCc----
Confidence 5555 7788888888888886665511 1 3446899999999999999999986 333
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+||. +++.+++++++
T Consensus 472 -------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~ 541 (994)
T PRK07868 472 -------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGG 541 (994)
T ss_pred -------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccC
Confidence 69999999999999999999999999999999999999999999999999999999985 68999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCC--CCCCCCCCCCeEEE
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVI 280 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~a~i 280 (721)
++++|++.+..+.+... ...++.++...... ...........++++.......+ ..+....++|+++|
T Consensus 542 ~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I 611 (994)
T PRK07868 542 VTEIITDPTNLEAARQL------PGRVLVLGGGESRD----LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFI 611 (994)
T ss_pred CeEEEEChHHHHHHHhc------CceEEEecCCcccc----ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEE
Confidence 99999997766554331 13455544221100 00000001111221111000000 00112236899999
Q ss_pred EeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHH-HHhcceEeeC---cccccccc
Q 004961 281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGYG---STLTMTDT 356 (721)
Q Consensus 281 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~-l~~G~~~~~~---~~~~~~~~ 356 (721)
+|| ||||.||++.++|.+...........+ .+.++|++++.+|++|++++...+.+ +..|+++++. ++..+.
T Consensus 612 iyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~-- 687 (994)
T PRK07868 612 AFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFV-- 687 (994)
T ss_pred EEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHH--
Confidence 999 588888888888877665555555556 78899999999999999999875555 4455555553 333333
Q ss_pred chhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHH
Q 004961 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436 (721)
Q Consensus 357 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (721)
..|+++++|+++++|++++.+.+....
T Consensus 688 ---------~~I~~~~vT~~~~~Ps~l~~L~~~~~~-------------------------------------------- 714 (994)
T PRK07868 688 ---------QEVRQYGVTVVSYTWAMLREVVDDPAF-------------------------------------------- 714 (994)
T ss_pred ---------HHHHHhCCcEEEeHHHHHHHHHhCcCC--------------------------------------------
Confidence 349999999999999999988752100
Q ss_pred HHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC-CceecccccchhcccccccCCCCCCCCccCCCcCcc-eEEEEe--
Q 004961 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVS-- 512 (721)
Q Consensus 437 ~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~-~v~i~d-- 512 (721)
.....+++|.++ |+.+++++.+.+.+.++ ++++|.||+||++.+.+. ....+.+++|+|+||+ +++|.+
T Consensus 715 ---~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~pg~~~v~i~~~d 787 (994)
T PRK07868 715 ---VLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLPGAGRVELAAYD 787 (994)
T ss_pred ---ccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccCCCCceeEEEec
Confidence 000114789776 33499999999888886 789999999998765432 2234568999999998 777652
Q ss_pred c-------CCCCcccCCCCCCcceEEEccccccccccCCCccccc--ccccCCCCcceEeeCcEEEEccCCeEEEEecCC
Q 004961 513 W-------DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE--VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583 (721)
Q Consensus 513 ~-------~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~--~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~ 583 (721)
+ ++.++...+++|+.|||+++|+.. + +|+.+.. .| .+++|||+|||+|++|+||+|+|+||+|
T Consensus 788 ~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~---~~~dgw~~TGDlg~~d~dG~l~~~GR~d 859 (994)
T PRK07868 788 PEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVF---APADTWISTEYLFRRDDDGDYWLVDRRG 859 (994)
T ss_pred CcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhccc---ccCCEEEeccceEEEcCCCCEEEeccCC
Confidence 1 122222225688999999999863 3 4554432 34 2234999999999999999999999999
Q ss_pred CeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc--eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHH
Q 004961 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEV 661 (721)
Q Consensus 584 d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~--~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (721)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++.++. ..+
T Consensus 860 d~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~--------~~~----------------- 913 (994)
T PRK07868 860 SVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA--------AIT----------------- 913 (994)
T ss_pred CEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC--------cCC-----------------
Confidence 99997 58899999999999999999999999987653 689999976532 000
Q ss_pred HHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 662 QQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 662 ~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
.++|+++++ + ||.||+|+.|++++++ | +|++||++|++|+++
T Consensus 914 ~~~L~~~l~-~-l~~y~vP~~i~~v~~l--P----~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 914 AADLTEALA-S-LPVGLGPDIVHVVPEI--P----LSATYRPTVSALRAA 955 (994)
T ss_pred HHHHHHHHH-h-CCCCcCCeEEEEeCCC--C----CCccccEehHHHHhc
Confidence 267888997 5 9999999999999998 6 999999999999765
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=549.83 Aligned_cols=455 Identities=24% Similarity=0.317 Sum_probs=370.5
Q ss_pred HHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHH
Q 004961 91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170 (721)
Q Consensus 91 ~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~ 170 (721)
.+++.++++|+.. +++ .+||+||.++++++|..|. ++|+|+++++|+++|++
T Consensus 9 ~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~ 60 (471)
T PRK07787 9 VAAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVL 60 (471)
T ss_pred hhcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHH
Confidence 3456788899875 443 7999999999999999996 57999999999999999
Q ss_pred HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCc
Q 004961 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250 (721)
Q Consensus 171 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 250 (721)
+++||+++|++++|+++..+.+++.++++++++++++++.... ...++.+.... ..
T Consensus 61 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~~~~----~~-------------- 116 (471)
T PRK07787 61 AVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVPVRL----HA-------------- 116 (471)
T ss_pred HHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------cccccceeeec----cc--------------
Confidence 9999999999999999999999999999999999999986321 01111111000 00
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHH
Q 004961 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330 (721)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 330 (721)
.++ .......++|+++|+|||||||.||||+++|+++...+......+ .+.++|++++.+|++|.+
T Consensus 117 --~~~-----------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~ 182 (471)
T PRK07787 117 --RSW-----------HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVH 182 (471)
T ss_pred --ccc-----------ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeec
Confidence 000 001224578999999999999999999999999999988888777 888999999999999999
Q ss_pred HHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004961 331 ELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY 409 (721)
Q Consensus 331 g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 409 (721)
|+.. ++.++..|+++++.+... +..++..++ +++|++.++|+++..+.+....
T Consensus 183 g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~----------------- 236 (471)
T PRK07787 183 GLVLGVLGPLRIGNRFVHTGRPT--------PEAYAQALS-EGGTLYFGVPTVWSRIAADPEA----------------- 236 (471)
T ss_pred hhHHHHHHHHhcCCEEEecCCCC--------HHHHHHHHh-hCceEEEcchHHHHHHHhCccc-----------------
Confidence 9876 677899999998843221 122333388 9999999999999988752100
Q ss_pred HHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhccccccc
Q 004961 410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS 489 (721)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~ 489 (721)
....+++|.+++||+++++++.+.+.+.++.++++.||+||++...+..
T Consensus 237 -------------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 285 (471)
T PRK07787 237 -------------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTR 285 (471)
T ss_pred -------------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecC
Confidence 0011479999999999999999999998999999999999998655444
Q ss_pred CCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCC-CcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEE
Q 004961 490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568 (721)
Q Consensus 490 ~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg 568 (721)
.......+++|+|+++++++|+| +++..++ . .+ ..|||+++|++++.||+++++.|++.|. .+ |||+|||+|
T Consensus 286 ~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~-~-~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~--~~--~~~~TGDlg 358 (471)
T PRK07787 286 ADGERRPGWVGLPLAGVETRLVD-EDGGPVP-H-DGETVGELQVRGPTLFDGYLNRPDATAAAFT--AD--GWFRTGDVA 358 (471)
T ss_pred CCCcccCCcccccCCCcEEEEEC-CCCCCCC-C-CCCCceEEEEECcccchhhcCChhhchhccc--CC--CceecCceE
Confidence 33344567899999999999999 4555443 1 23 3799999999999999999999999985 56 899999999
Q ss_pred EEccCCeEEEEecC-CCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCC
Q 004961 569 QVYPDGCLEIIDRK-KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIK 644 (721)
Q Consensus 569 ~~d~dG~l~i~GR~-~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~ 644 (721)
++|+||+++++||+ ||+||. +|++|+|.+||++|.++|.|++++|++.++. ..++|+|++.... +
T Consensus 359 ~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~----------~ 427 (471)
T PRK07787 359 VVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV----------A 427 (471)
T ss_pred EEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC----------C
Confidence 99999999999996 899996 6999999999999999999999999998765 3688998873221 0
Q ss_pred cccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 645 YEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.+++.++++ ++|++|++|..|++++++ | +|++||++|++|++
T Consensus 428 -----------------~~~l~~~l~-~~l~~~~~P~~i~~~~~i--P----~~~~GKi~r~~L~~ 469 (471)
T PRK07787 428 -----------------ADELIDFVA-QQLSVHKRPREVRFVDAL--P----RNAMGKVLKKQLLS 469 (471)
T ss_pred -----------------HHHHHHHHH-hhcccccCCcEEEEeccC--C----CCCCccccHHHhcc
Confidence 256778888 899999999999999987 6 99999999999975
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-63 Score=546.47 Aligned_cols=449 Identities=22% Similarity=0.276 Sum_probs=373.5
Q ss_pred CHHHHH-HHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 83 TMAALF-EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 83 tl~~~~-~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
++.+.. ++.++++|+++|+.. +++ .+||+||.++++++|..|.+.|+++||+|+++
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~ 59 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALR 59 (458)
T ss_pred hhhcChHHHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 444444 556899999999974 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++..+++++.++++++++++++++.+... +.. +.....
T Consensus 60 ~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~~~---------- 121 (458)
T PRK09029 60 GKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSLHL---------- 121 (458)
T ss_pred cCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------cccccc----------
Confidence 99999999999999999999999999999999999999999999999876432 110 000000
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.. .....+....++++++++|||||||.||||++||++++..+......+ .+.++|+++
T Consensus 122 --------------~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l 180 (458)
T PRK09029 122 --------------QL------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWL 180 (458)
T ss_pred --------------cc------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEE
Confidence 00 000112334678999999999999999999999999999998888877 889999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (721)
..+|++|.+++...+.+|..|+++++.+...+.+. + .++|.+..+|+++..+......
T Consensus 181 ~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~--------- 238 (458)
T PRK09029 181 LSLPLFHVSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE--------- 238 (458)
T ss_pred EecCcHhhhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc---------
Confidence 99999999998777778999999998664433333 4 3789999999999887652110
Q ss_pred HHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccch
Q 004961 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (721)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE 481 (721)
..++|.+++||+++++.+.+.+.. +|+++++.||+||
T Consensus 239 ------------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE 275 (458)
T PRK09029 239 ------------------------------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTE 275 (458)
T ss_pred ------------------------------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccc
Confidence 137999999999999999988876 4999999999999
Q ss_pred hcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcce
Q 004961 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (721)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw 561 (721)
++...+..... ...++|+|+++++++|++ |||+|+|++++.||+++++.+.... .+ ||
T Consensus 276 ~~~~~~~~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~~---~~--~~ 333 (458)
T PRK09029 276 MASTVCAKRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLVN---DE--GW 333 (458)
T ss_pred cCcceeccCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCcccccccc---CC--Cc
Confidence 98765543322 235799999999999976 8999999999999999998876443 44 89
Q ss_pred EeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHH
Q 004961 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWA 638 (721)
Q Consensus 562 ~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~ 638 (721)
|+|||+|++| ||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|+++...
T Consensus 334 ~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~----- 406 (458)
T PRK09029 334 FATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA----- 406 (458)
T ss_pred cCCCCcEEEe-CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc-----
Confidence 9999999999 9999999999999997 59999999999999999999999999998763 588888876321
Q ss_pred HHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHH
Q 004961 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 716 (721)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i 716 (721)
..++|+++++ ++|++|++|..+++++.. | +|.+||++|+.|++++++..
T Consensus 407 ----------------------~~~~l~~~~~-~~l~~~~~P~~~~~~~~~--p----~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 407 ----------------------AVVNLAEWLQ-DKLARFQQPVAYYLLPPE--L----KNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred ----------------------CHHHHHHHHH-hhchhccCCeEEEEeccc--c----cCcCCCcCHHHHHHHHHhcc
Confidence 1267888998 899999999999999987 5 89999999999999887643
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=549.58 Aligned_cols=490 Identities=21% Similarity=0.242 Sum_probs=397.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+++.++|+++++.+|+++|+.. ++. .+||+||.++++++|..|.+.|+++|++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~ 58 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF 58 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5788999999999999999875 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+.+|+++++||+++|++++|+++.++.+++.++++.+++++++++...... ..
T Consensus 59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------- 114 (503)
T PRK04813 59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE----IL-------------------- 114 (503)
T ss_pred cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc----cc--------------------
Confidence 999999999999999999999999999999999999999999999998765110 00
Q ss_pred CccCCCCCceEeeHHHHHhcC--CCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcE
Q 004961 242 GVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (721)
......++++.... ...........++++++++|||||||.||+|.+||+++...+.+....+ .+..+++
T Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~ 186 (503)
T PRK04813 115 -------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQ 186 (503)
T ss_pred -------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCce
Confidence 01122233322211 1111112334678899999999999999999999999999988888777 8899999
Q ss_pred EEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 320 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++..+|++|..++...+.++..|+++++.+.....+. ..+...++++++|++..+|++++.+......
T Consensus 187 ~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~-----~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~------- 254 (503)
T PRK04813 187 FLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANF-----KQLFETLPQLPINVWVSTPSFADMCLLDPSF------- 254 (503)
T ss_pred eeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-------
Confidence 9999999999998888889999999988554322222 2233348899999999999999876542110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG 478 (721)
.....+++|.++++|+++++.+.+++.+.+ ++.+++.||
T Consensus 255 ----------------------------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG 294 (503)
T PRK04813 255 ----------------------------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYG 294 (503)
T ss_pred ----------------------------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcc
Confidence 011125899999999999999999998887 789999999
Q ss_pred cchhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004961 479 LTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
+||++..++..... .....++|+|.++++++|+| +++..+ ++|+.|||+|+|++++.||+++++.|.+.|.
T Consensus 295 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 370 (503)
T PRK04813 295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKL---PDGEQGEIVISGPSVSKGYLNNPEKTAEAFF 370 (503)
T ss_pred cchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCC---CCCCceEEEEeccccccccCCChhHhHHhhc
Confidence 99997654432211 22346899999999999999 566544 4788999999999999999999999999885
Q ss_pred cCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcC
Q 004961 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (721)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~ 630 (721)
. .+|.+||+|||+|++ ++|++++.||.||+||+ +|++|+|.+||+++.++|+|++++|++.++. +.+++++++.
T Consensus 371 ~-~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 447 (503)
T PRK04813 371 T-FDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPK 447 (503)
T ss_pred c-CCCceeEECCceEEe-eCCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEec
Confidence 2 244579999999999 89999999999999997 6999999999999999999999999986643 4688998887
Q ss_pred hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
++... . ..++.++++++++ .+|+.|++|+.+++++++ | +|++||++|++|++
T Consensus 448 ~~~~~---------~------------~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~--P----~t~~gKv~r~~l~~ 499 (503)
T PRK04813 448 EEDFE---------R------------EFELTKAIKKELK-ERLMEYMIPRKFIYRDSL--P----LTPNGKIDRKALIE 499 (503)
T ss_pred ccccc---------c------------cchhHHHHHHHHH-hhCccccCCeEEEEeccC--C----CCCCCCCcHHHHHH
Confidence 54210 0 1233467888888 889999999999999988 6 99999999999998
Q ss_pred HHH
Q 004961 711 KFK 713 (721)
Q Consensus 711 ~~~ 713 (721)
++.
T Consensus 500 ~~~ 502 (503)
T PRK04813 500 EVN 502 (503)
T ss_pred Hhc
Confidence 875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=552.57 Aligned_cols=476 Identities=20% Similarity=0.249 Sum_probs=377.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..++.+.|.++++++|+++|+.. ++. .+||+|+.++++++|++|.+.|+++||+|++
T Consensus 34 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i 90 (516)
T PRK13383 34 GTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVGV 90 (516)
T ss_pred CCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 47899999999999999999974 222 5999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++.+++++.....+..... .++.++...
T Consensus 91 ~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~---- 160 (516)
T PRK13383 91 MCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT---- 160 (516)
T ss_pred ECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch----
Confidence 9999999999999999999999999999999999999999999999999876655443211 122221110
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHH--HHHHHhhCCCCCCCc
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT--AAAIKTLIPNPGRSD 318 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~~d 318 (721)
.... ... ..+...++.++|+|||||||.||||++||...... .......+ ++.++|
T Consensus 161 ---------------~~~~----~~~--~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d 218 (516)
T PRK13383 161 ---------------AGAE----ESG--GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS 218 (516)
T ss_pred ---------------hhhh----cCC--CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence 0000 000 11123456789999999999999999999843221 12222334 778899
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+++..+|++|.+++...+.++..|+++++..... . ..++..++++++|.+.++|+++..+.+..... ..
T Consensus 219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~---~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~-- 287 (516)
T PRK13383 219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFD---A-----EAALAQASLHRADAFTAVPVVLARILELPPRV-RA-- 287 (516)
T ss_pred eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCC---H-----HHHHHHHHHhCCcEEEecHHHHHHHHhccccc-cc--
Confidence 9999999999999988888899999998732211 1 11223388999999999999999886531100 00
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....+++|.+++||+++++++.+.+.+.+|..+++.||
T Consensus 288 ------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG 325 (516)
T PRK13383 288 ------------------------------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYG 325 (516)
T ss_pred ------------------------------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhccc
Confidence 00124899999999999999999999989999999999
Q ss_pred cchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
+||++..+...... ....+++|+|+|+++++|+| +++.. +++|+.|||+++|+.++.||++++. +.+ .+
T Consensus 326 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~---~~ 395 (516)
T PRK13383 326 STEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRP---VGPRVTGRIFVGGELAGTRYTDGGG---KAV---VD 395 (516)
T ss_pred ccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCC---CCCCCceEEEEecCcccccccCCch---hhe---ec
Confidence 99998655443321 22357899999999999999 55554 4578999999999999999998754 223 45
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKAL 634 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~ 634 (721)
|||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++. +.++++|++.+..
T Consensus 396 --g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~- 471 (516)
T PRK13383 396 --GMTSTGDMGYLDNAGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGS- 471 (516)
T ss_pred --CceecceeEEEcCCccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC-
Confidence 89999999999999999999999999997 6999999999999999999999999998754 3588888876432
Q ss_pred HHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHH
Q 004961 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
..+ .++|+++++ ++|+.|++|..|++++++ | +|++||++|++|+
T Consensus 472 -------~~~-----------------~~~l~~~~~-~~l~~~~~p~~i~~v~~i--P----~t~~gKi~r~~L~ 515 (516)
T PRK13383 472 -------GVD-----------------AAQLRDYLK-DRVSRFEQPRDINIVSSI--P----RNPTGKVLRKELP 515 (516)
T ss_pred -------CCC-----------------HHHHHHHHH-HhcccCCCCcEEEEeCCC--C----CCCCCcCcHHHhC
Confidence 000 256888888 889999999999999987 6 9999999999874
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=547.64 Aligned_cols=497 Identities=20% Similarity=0.229 Sum_probs=394.1
Q ss_pred HHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHH
Q 004961 89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW 168 (721)
Q Consensus 89 ~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~ 168 (721)
...++++|+++|+++.. ++ +.+||+||.++++++|++|.+.|+++|++|+++++|++++
T Consensus 4 ~~~a~~~p~~~a~~~~~----------~~-----------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~ 62 (511)
T PRK13391 4 GIHAQTTPDKPAVIMAS----------TG-----------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY 62 (511)
T ss_pred hhhHhhCCCceEEEecC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 46789999999997521 23 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCC
Q 004961 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248 (721)
Q Consensus 169 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 248 (721)
+++++||+++|++++|+++.++.+++.+++++++++.++++......+......++.....+..+.....
T Consensus 63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 132 (511)
T PRK13391 63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------- 132 (511)
T ss_pred HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence 9999999999999999999999999999999999999999988877666666666666555555432111
Q ss_pred CceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeee--ccHHHHHH---HHHHHhhCCCCCCCcEEEec
Q 004961 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVAT---AAAIKTLIPNPGRSDVYLAY 323 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~--sh~~l~~~---~~~~~~~~~~~~~~d~~l~~ 323 (721)
.....+++..... +. ....+.++.++++|||||||.||||++ +|.++... .......+ .+.+++++++.
T Consensus 133 -~~~~~~~~~~~~~---~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 206 (511)
T PRK13391 133 -EGFVGYAEAVAGL---PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSP 206 (511)
T ss_pred -cccccHHHHhcCC---CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEc
Confidence 1122344433211 11 112234567999999999999999995 56665433 23334445 77889999999
Q ss_pred cChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHH
Q 004961 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN 403 (721)
Q Consensus 324 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 403 (721)
+|++|.+++...+.++..|+++++.+... +..++..++++++|++.++|+++..+.+......
T Consensus 207 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------- 269 (511)
T PRK13391 207 APLYHSAPQRAVMLVIRLGGTVIVMEHFD--------AEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR--------- 269 (511)
T ss_pred CCHHHHHHHHHHHHHHHcCceEEECCCCC--------HHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc---------
Confidence 99999999888788899999998843211 1122333999999999999999988764211000
Q ss_pred HHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhc
Q 004961 404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483 (721)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~ 483 (721)
.....+++|.+++||+++++++.+.+++.+|..+++.||+||++
T Consensus 270 ------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~ 313 (511)
T PRK13391 270 ------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGL 313 (511)
T ss_pred ------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccccc
Confidence 00112589999999999999999999998899999999999998
Q ss_pred ccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceE
Q 004961 484 AGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562 (721)
Q Consensus 484 ~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~ 562 (721)
.++...... ....+++|+|+++ +++|+| +++..+ +.|+.|||+++|+ ++.||+++++.+.+.|.. + .+||
T Consensus 314 ~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~---~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~--~-~~w~ 384 (511)
T PRK13391 314 GFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAEL---PPGEPGTIWFEGG-RPFEYLNDPAKTAEARHP--D-GTWS 384 (511)
T ss_pred ceEEecCccccccCCCcCCcccc-eEEEEC-CCCCCC---CCCCceEEEEecC-cceEEcCChhHhHHhhcc--C-CCEE
Confidence 765443222 2345799999999 699998 566543 4788999999999 899999999999998852 2 3899
Q ss_pred eeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHHH
Q 004961 563 YTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAH 639 (721)
Q Consensus 563 ~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~~ 639 (721)
+|||+|+++++|.++|.||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.++.. .+++++++..+.
T Consensus 385 ~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~------ 457 (511)
T PRK13391 385 TVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV------ 457 (511)
T ss_pred ecCCEEEECCCccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC------
Confidence 99999999999999999999999997 59999999999999999999999999987653 478888876432
Q ss_pred HhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 640 EASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
..+ +.+.++|+++++ ++|+.|++|..|.+++++ | +|++||++|+.|++.|..
T Consensus 458 ----~~~------------~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~--P----~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 458 ----DPG------------PALAAELIAFCR-QRLSRQKCPRSIDFEDEL--P----RLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred ----Ccc------------cchHHHHHHHHH-hhcccCcCCcEEEEeecC--C----CCCccceeHHHHHHHhhc
Confidence 000 122367888898 899999999999999998 6 999999999999998864
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-62 Score=551.65 Aligned_cols=515 Identities=23% Similarity=0.318 Sum_probs=397.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAA 159 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Va 159 (721)
..++.++|+++++++|+++|+.. ++. .+||+||.++++++|..|.+ .|+++|++|+
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~ 78 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVA 78 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 46899999999999999999975 333 69999999999999999984 8999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCc
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (721)
++++|++++++++|||+++|++++|++|.++.+++.++++.++++.++++++..+.+..+.... ..+.++.........
T Consensus 79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (560)
T PRK08974 79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS 157 (560)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence 9999999999999999999999999999999999999999999999999887665555443322 223333221110000
Q ss_pred --cCCc--------cCC-C--CCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH
Q 004961 240 --DSGV--------SGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (721)
Q Consensus 240 --~~~~--------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (721)
.... ... + ......++.+....+...........++++++|+|||||||.||||+++|+++..++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~ 237 (560)
T PRK08974 158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ 237 (560)
T ss_pred ccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence 0000 000 0 00011223333322222111122346789999999999999999999999999887765
Q ss_pred HHhhCC--CCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeC-ccccccccchhhccCccccceeecceEEeechHH
Q 004961 307 IKTLIP--NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382 (721)
Q Consensus 307 ~~~~~~--~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~ 382 (721)
....+. ....++.++..+|++|.+++.. .+.++..|+++++. ++... ..++..++++++|++.++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~ 309 (560)
T PRK08974 238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDI--------PGFVKELKKYPFTAITGVNTL 309 (560)
T ss_pred HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCH--------HHHHHHHHhcCcceEcCcHHH
Confidence 544331 2344678889999999999755 56668888887763 22111 112333899999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHH
Q 004961 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462 (721)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~ 462 (721)
++.+...... .....+++|.+++||+++++.+.
T Consensus 310 ~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~ 342 (560)
T PRK08974 310 FNALLNNEEF-----------------------------------------------QELDFSSLKLSVGGGMAVQQAVA 342 (560)
T ss_pred HHHHHhCcCc-----------------------------------------------ccCCccceeEEEecCccCCHHHH
Confidence 9988652100 00112489999999999999999
Q ss_pred HHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccc
Q 004961 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541 (721)
Q Consensus 463 ~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY 541 (721)
+.|++.+|+++++.||+||++..++...... ...+++|.|+|+++++|+| +++.. ++.|+.|||+++|+.++.||
T Consensus 343 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy 418 (560)
T PRK08974 343 ERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNE---VPPGEPGELWVKGPQVMLGY 418 (560)
T ss_pred HHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCC---CCCCCceEEEEecCCcchhh
Confidence 9999888999999999999987766544322 2357899999999999999 55554 35789999999999999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~ 621 (721)
+++++.+.+.| .+ |||+|||+|+++++|+++|+||.||+|++ +|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus 419 ~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~ 492 (560)
T PRK08974 419 WQRPEATDEVI---KD--GWLATGDIAVMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEV 492 (560)
T ss_pred cCChhhhhhhh---hc--CCcccCCEEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence 99999999888 66 89999999999999999999999999998 59999999999999999999999999987653
Q ss_pred ---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
.++++++..+.. .+ .++++++++ ++|+.|++|..+++++++ | +|
T Consensus 493 ~g~~~~~~v~~~~~~---------~~-----------------~~~l~~~l~-~~l~~~~~P~~~~~~~~l--P----~t 539 (560)
T PRK08974 493 SGEAVKIFVVKKDPS---------LT-----------------EEELITHCR-RHLTGYKVPKLVEFRDEL--P----KS 539 (560)
T ss_pred cceEEEEEEECCCCC---------CC-----------------HHHHHHHHH-hhcccccCCcEEEEhhhC--C----CC
Confidence 356666544211 00 156777887 889999999999999988 6 99
Q ss_pred cccccChHHHHHHHHHHHH
Q 004961 699 AALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~ 717 (721)
++||++|++|++...++.+
T Consensus 540 ~~GK~~r~~l~~~~~~~~~ 558 (560)
T PRK08974 540 NVGKILRRELRDEARAKVD 558 (560)
T ss_pred CCCcEeHHHHHHHHHhhhc
Confidence 9999999999999887765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=547.20 Aligned_cols=507 Identities=20% Similarity=0.235 Sum_probs=399.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
-|+.++|+++++++|+++|+.+ +++ .+||+||.++++++|+.|.+.|+++||+|+|+
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~ 59 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIY 59 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3799999999999999999986 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+.++...++..+.++.++......
T Consensus 60 ~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (533)
T PRK07798 60 ARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND-- 137 (533)
T ss_pred cCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc--
Confidence 999999999999999999999999999999999999999999999999888777777766677777777766432211
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC--------CC
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--------PN 313 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------~~ 313 (721)
......+++++........ ... ...+|.++|+|||||||.||+|++||+++...+......+ ..
T Consensus 138 ------~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (533)
T PRK07798 138 ------LLPGAVDYEDALAAGSPER-DFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEE 209 (533)
T ss_pred ------cCCccccHHHHHhccCCcC-CCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhh
Confidence 0012456777665432211 111 2234457999999999999999999999987655432211 01
Q ss_pred C------CCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHH-H
Q 004961 314 P------GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-V 386 (721)
Q Consensus 314 ~------~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~-l 386 (721)
+ ..+++++..+|++|.++++..+.+++.|+++++.+.. ..+ +..++..++++++|++.++|..+.. +
T Consensus 210 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~~~-----~~~~~~~i~~~~~t~~~~~~~~~~~~l 283 (533)
T PRK07798 210 LAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDV-RFD-----ADEVWRTIEREKVNVITIVGDAMARPL 283 (533)
T ss_pred hcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCC-CcC-----HHHHHHHHHHhCCeEEEechHHHHHHH
Confidence 1 5678999999999999999888999999999996532 111 2234445999999999999876654 3
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHH
Q 004961 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (721)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~ 466 (721)
..... . ......+++|.+++||+++++++.+++.
T Consensus 284 ~~~~~----~------------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~ 317 (533)
T PRK07798 284 LDALE----A------------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALL 317 (533)
T ss_pred HHHhc----c------------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHH
Confidence 22111 0 0011225899999999999999999998
Q ss_pred Hhh-CCceecccccchhcccccccCCCCCCCCccC--CCcCcceEEEEecCCCCcccCCCCCCc--ceEEEccccccccc
Q 004961 467 ICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG--PPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGGFNVTAGY 541 (721)
Q Consensus 467 ~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG--~p~p~~~v~i~d~~~~~~~~~~~~g~~--GEl~v~g~~v~~gY 541 (721)
+.+ +..+++.||+||++.......... ....| ++.++..++|+| +++..+ ++|+. |+|+ +++.++.||
T Consensus 318 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~-~~~~~~---~~g~~~~g~l~-~~~~~~~gy 390 (533)
T PRK07798 318 ELLPNVVLTDSIGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLD-EDGNPV---EPGSGEIGWIA-RRGHIPLGY 390 (533)
T ss_pred HHcCCCeEEeeecccccccccccCCCCC--CccCCCCccCCCceEEEEC-CCCCCC---CCCCCCeeEEE-eecCccccc
Confidence 877 789999999999976544332211 12334 788999999999 555544 35665 6665 566899999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC-
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
+++++.|++.|.. .++.+||+|||+|++|+||+++++||.||+||. +|++|+|.+||+++.++|.|.+++|++.++.
T Consensus 391 ~~~~~~t~~~f~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~ 468 (533)
T PRK07798 391 YKDPEKTAETFPT-IDGVRYAIPGDRARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDER 468 (533)
T ss_pred cCChhhhHHhhcc-CCCCceEEcCcEEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcc
Confidence 9999999999853 244579999999999999999999999999996 6999999999999999999999999998754
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++++|++.++. .. ..++|+++++ .+|+.|++|+.+++++++ | +|
T Consensus 469 ~~~~~~~~v~~~~~~----------~~---------------~~~~l~~~l~-~~l~~~~~P~~i~~~~~i--P----~t 516 (533)
T PRK07798 469 WGQEVVAVVQLREGA----------RP---------------DLAELRAHCR-SSLAGYKVPRAIWFVDEV--Q----RS 516 (533)
T ss_pred cCceEEEEEEECCCC----------CC---------------CHHHHHHHHh-hhcccCCCCeEEEEcccC--C----CC
Confidence 3588888876432 00 0267888888 889999999999999988 6 99
Q ss_pred cccccChHHHHHHHHH
Q 004961 699 AALKIKREQLKAKFKD 714 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~ 714 (721)
++||++|+.|+++.++
T Consensus 517 ~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 517 PAGKADYRWAKEQAAE 532 (533)
T ss_pred CcchhhHHHHhhhhcc
Confidence 9999999999998765
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=547.17 Aligned_cols=505 Identities=22% Similarity=0.229 Sum_probs=388.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.++.+.|++.++++|+++|+.. ++. .+||+||.++++++|.+|.+.|+++||+|+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~ 74 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL 74 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 6889999999999999999975 332 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++.+....+.+....++..+.++ ++......
T Consensus 75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 151 (545)
T PRK08162 75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV-IDVDDPEY-- 151 (545)
T ss_pred CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEE-EecCcccc--
Confidence 999999999999999999999999999999999999999999999999988777666544444332222 22111100
Q ss_pred CccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.....+...+++++..............+.+++++|+|||||||.||||+++|+++..........+ .+..+++++
T Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l 227 (545)
T PRK08162 152 ---PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYL 227 (545)
T ss_pred ---ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeE
Confidence 0001123345666654322211111223456899999999999999999999999877766655556 788889999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEee---CccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+.+|++|.+++...+...+.|++.++ .++..+. ..++++++|++.++|++++.|.+......
T Consensus 228 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---- 292 (545)
T PRK08162 228 WTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIF-----------DLIREHGVTHYCGAPIVLSALINAPAEWR---- 292 (545)
T ss_pred eccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHH-----------HHHHHcCCeEEEechHHHHHHHhCccccc----
Confidence 99999999998765444445555444 2333333 33999999999999999999875311000
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....+.+.++++|+++++++.+.++. .++++++.||
T Consensus 293 -------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG 328 (545)
T PRK08162 293 -------------------------------------------AGIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYG 328 (545)
T ss_pred -------------------------------------------cCCccceEEEECCCCCCHHHHHHHHH-hCCceeeccc
Confidence 00024556788999999999988876 4899999999
Q ss_pred cchhcccccccCCC-----------CCCCCccCCCcC-cceEEEEecCCCCcccCCCCC-CcceEEEccccccccccCCC
Q 004961 479 LTETCAGSTFSEWD-----------DPSVGRVGPPVP-CCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNP 545 (721)
Q Consensus 479 ~TE~~~~~~~~~~~-----------~~~~~~vG~p~p-~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~~v~~gY~~~~ 545 (721)
+||+++.++..... ....+++|.+.+ +..++|+|++++..++ ..| +.|||+|+|+.++.||++++
T Consensus 329 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~--~~g~~~Gel~v~g~~~~~gY~~~~ 406 (545)
T PRK08162 329 LTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP--ADGETIGEIMFRGNIVMKGYLKNP 406 (545)
T ss_pred ccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC--CCCCceeEEEEecCcchhhhcCCh
Confidence 99986544432111 011246677765 3468888865555433 123 46999999999999999999
Q ss_pred cccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ce
Q 004961 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NY 622 (721)
Q Consensus 546 ~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~ 622 (721)
+.|.+.| .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+++ +.
T Consensus 407 ~~~~~~~---~~--g~~~TGDl~~~d~dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~ 480 (545)
T PRK08162 407 KATEEAF---AG--GWFHTGDLAVLHPDGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEV 480 (545)
T ss_pred hhhHHHh---hC--CCcccCceEEEcCCccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCce
Confidence 9999998 66 89999999999999999999999999996 6999999999999999999999999998754 35
Q ss_pred EEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccc
Q 004961 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALK 702 (721)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gK 702 (721)
++++|++.++. .. ..++|+++++ ++|+.|++|..+++. ++ | +|++||
T Consensus 481 ~~~~v~~~~~~----------~~---------------~~~~l~~~~~-~~l~~~~~P~~~~~~-~i--P----~t~~gK 527 (545)
T PRK08162 481 PCAFVELKDGA----------SA---------------TEEEIIAHCR-EHLAGFKVPKAVVFG-EL--P----KTSTGK 527 (545)
T ss_pred EEEEEEeCCCC----------CC---------------CHHHHHHHHH-HhcccccCCcEEEec-cc--C----CCCCcC
Confidence 88888876532 00 0267888888 899999999999764 44 5 899999
Q ss_pred cChHHHHHHHHHHH
Q 004961 703 IKREQLKAKFKDDL 716 (721)
Q Consensus 703 i~R~~l~~~~~~~i 716 (721)
++|+.|++++++.-
T Consensus 528 ~~r~~l~~~~~~l~ 541 (545)
T PRK08162 528 IQKFVLREQAKSLK 541 (545)
T ss_pred CcHHHHHHHHhhhh
Confidence 99999999877654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=547.12 Aligned_cols=463 Identities=17% Similarity=0.155 Sum_probs=337.9
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc------hhHHHhhhccCCCceEEEEecCC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ------LKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
++|++|+++++|||+++|++++|+|+.++.+++.++|++++++++|+++.. .+.+..+....+ .+.++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222222222 2333322111
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCC------CCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRS------PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (721)
.... ........+++++....... ...+....++|+++|+|||||||.||||++||+|++........
T Consensus 80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~ 153 (499)
T PLN03051 80 EPVA------VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA 153 (499)
T ss_pred cccC------CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence 0000 00000123466654321110 11112235689999999999999999999999998877665555
Q ss_pred hCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
.+ ++.++|++++.+|++|.+++..++.+|+.|+++++.+... + ...++..|+++++|++.++|+++..|.+.
T Consensus 154 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~--~-----~~~~~~~i~~~~vt~~~~vP~~~~~l~~~ 225 (499)
T PLN03051 154 HM-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP--L-----GRGFGKFVQDAGVTVLGLVPSIVKAWRHT 225 (499)
T ss_pred hc-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC--C-----cHHHHHHHHHhCCcEEEeCHHHHHHHHhc
Confidence 66 7889999999999999999877778899999998853211 0 11233449999999999999999988653
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
..... .....++||.+++||+++++++.+++++.+
T Consensus 226 ~~~~~---------------------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~ 260 (499)
T PLN03051 226 GAFAM---------------------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVR 260 (499)
T ss_pred Ccccc---------------------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhc
Confidence 10000 001124899999999999999988777633
Q ss_pred --CCceecccccchhcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCC--CcceEEEccccc--ccccc
Q 004961 470 --GAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV--TAGYF 542 (721)
Q Consensus 470 --g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g--~~GEl~v~g~~v--~~gY~ 542 (721)
+++++++||+||++...+.... .....+++|+|.++++++|+| ++++.++ +| +.|||+|+||.+ +.|||
T Consensus 261 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~---~g~~~~Gel~v~g~~~~~~~gy~ 336 (499)
T PLN03051 261 GYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYP---DDQPCVGEVALAPPMLGASDRLL 336 (499)
T ss_pred cccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCC---CCCCcceEEEEecCcCCCCcccc
Confidence 4789999999998754332221 223457999999999999999 6666554 45 589999999976 58999
Q ss_pred CCCcccccccccC----CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhc-CcccceEEEEec
Q 004961 543 NNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS-SDYVDNIMIHAD 617 (721)
Q Consensus 543 ~~~~~t~~~f~~~----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~-~p~V~~~~V~g~ 617 (721)
|++ .++..+... ..+.+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+ ||+|.+|+|++.
T Consensus 337 ~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~ 414 (499)
T PLN03051 337 NAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGV 414 (499)
T ss_pred CCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEe
Confidence 765 343322100 012348999999999999999999999999996 6999999999999986 999999999998
Q ss_pred CCC----ceEEEEE---EcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCC
Q 004961 618 PFH----NYCVALV---VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPW 690 (721)
Q Consensus 618 ~~~----~~~~A~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~ 690 (721)
+++ +.++|+| +++++.. . ...+++.+.++++++ ++|+.|+.|..|++++++
T Consensus 415 ~d~~~g~~~~~a~v~~~v~~~~~~---------~-----------~~~~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~l- 472 (499)
T PLN03051 415 APPDGGPELLVIFLVLGEEKKGFD---------Q-----------ARPEALQKKFQEAIQ-TNLNPLFKVSRVKIVPEL- 472 (499)
T ss_pred cCCCCCceEEEEEEEcceeccccc---------c-----------cchHHHHHHHHHHHH-hhcCCccCCceEEEcCCC-
Confidence 865 3578888 6554310 0 001345566777777 789987777789999988
Q ss_pred CCCCCccCcccccChHHHHHHHHHHHH
Q 004961 691 TPEAGLVTAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 691 ~p~~~~~t~~gKi~R~~l~~~~~~~i~ 717 (721)
| +|++|||+|++|++.+.+++.
T Consensus 473 -P----~t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 473 -P----RNASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred -C----CCCCccHHHHHHHHHHHHhhc
Confidence 6 999999999999998887664
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=556.89 Aligned_cols=504 Identities=21% Similarity=0.270 Sum_probs=380.3
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCC
Q 004961 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (721)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~ 154 (721)
+.++++..|+.++|+..++++|+..++.. ++ ..++.+||+||+.+++++|++|.++|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~ 73 (579)
T PRK09192 14 PRRYADFPTLVEALDYAALGEAGMNFYDR------------RG--------QLEEALPYQTLRARAEAGARRLLALGLKP 73 (579)
T ss_pred cccccchhhHHHHHHHhhccCCceEEEec------------CC--------CEEEEecHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566778999999999999887665421 12 12357999999999999999999999999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCC-------HHHHHHHHHhcCceEEEECccchhHHHhhhccCCCce
Q 004961 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK 227 (721)
Q Consensus 155 gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 227 (721)
||+|+++++|+++|+++++||+++|++++|+++..+ .+++.++++.++++++|+++...+.+.......+.
T Consensus 74 gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~-- 151 (579)
T PRK09192 74 GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL-- 151 (579)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc--
Confidence 999999999999999999999999999999987543 68999999999999999998876665544322111
Q ss_pred EEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH
Q 004961 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (721)
Q Consensus 228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (721)
+ ...++.++...... ........++++++|+|||||||.||||+++|++++..+...
T Consensus 152 -~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~ 208 (579)
T PRK09192 152 -L---------------------HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAI 208 (579)
T ss_pred -c---------------------ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHH
Confidence 0 11222332221111 111123467899999999999999999999999999988887
Q ss_pred Hh-hCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHH
Q 004961 308 KT-LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (721)
Q Consensus 308 ~~-~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 385 (721)
.. .+ ++.++|++++++|++|++++.. ++.++..|+++++.....+... +..++..+.++++|+++..|.++..
T Consensus 209 ~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~~~~~~l 283 (579)
T PRK09192 209 SHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR----PLQWLDLISRNRGTISYSPPFGYEL 283 (579)
T ss_pred Hhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC----HHHHHHHHHhcCcEEEeCCcHHHHH
Confidence 77 66 8899999999999999999876 5566888998876432221111 1223333889999987766555554
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHH
Q 004961 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (721)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~ 465 (721)
+....... ..+....+++|.+++||+++++++.+.+
T Consensus 284 ~~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~ 319 (579)
T PRK09192 284 CARRVNSK--------------------------------------------DLAELDLSCWRVAGIGADMIRPDVLHQF 319 (579)
T ss_pred HHHhhccc--------------------------------------------cccccchhhhheeEecCccCCHHHHHHH
Confidence 43211000 0001112589999999999999998888
Q ss_pred HHhhC------CceecccccchhcccccccCCCCC----------------------------CCCccCCCcCcceEEEE
Q 004961 466 NICMG------APIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVPCCYIKLV 511 (721)
Q Consensus 466 ~~~~g------~~l~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~p~~~v~i~ 511 (721)
.+.++ ..+++.||+||++..++....... ..+++|+|+|+++++|+
T Consensus 320 ~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~ 399 (579)
T PRK09192 320 AEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIR 399 (579)
T ss_pred HHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEE
Confidence 77663 348999999999876654332110 12579999999999999
Q ss_pred ecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCe
Q 004961 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591 (721)
Q Consensus 512 d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G 591 (721)
| +++..+ +.|+.|||+++|++++.|||++ +.+.+.+. .+ +||+|||+|++ ++|+++|+||+||+||+ +|
T Consensus 400 d-~~~~~~---~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~--~d--gw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G 468 (579)
T PRK09192 400 N-EAGMPL---PERVVGHICVRGPSLMSGYFRD-EESQDVLA--AD--GWLDTGDLGYL-LDGYLYITGRAKDLIII-NG 468 (579)
T ss_pred C-CCCCCC---CCCCEEEEEecCCchhhhhcCC-cccccccc--CC--ceeeccceeeE-ECCEEEEEeccccEEEE-CC
Confidence 9 555544 4788999999999999999999 66777765 56 89999999999 89999999999999998 69
Q ss_pred eeecchHHHHHHhcCcccc--eEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHH
Q 004961 592 EYISLGKVEAALISSDYVD--NIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667 (721)
Q Consensus 592 ~~v~~~eIE~~l~~~p~V~--~~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 667 (721)
++|+|.|||++|.+||+|. +|+|++.+++ ..++++|++.+... .. .++|++
T Consensus 469 ~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~---------------------~~----~~~l~~ 523 (579)
T PRK09192 469 RNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDE---------------------ER----RGQLIH 523 (579)
T ss_pred CccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCCh---------------------HH----HHHHHH
Confidence 9999999999999999998 8999987754 35777777643210 01 134444
Q ss_pred HHHHCCC-CCCccccEEEeeC--CCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 668 VAKAAKL-DKFEIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 668 ~~~~~~L-~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
.++ ..+ +.|++|..+++++ .+ | +|++||++|++|++.|.+.
T Consensus 524 ~~~-~~l~~~~~~~~~i~~~~~~~l--P----~t~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 524 ALA-ALVRSEFGVEAAVELVPPHSL--P----RTSSGKLSRAKAKKRYLSG 567 (579)
T ss_pred HHH-HHHHHHhCCCceEEEeCCCCc--C----CCCCcchhHHHHHHHHHcC
Confidence 444 343 3577888888886 34 6 9999999999999998764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=548.89 Aligned_cols=516 Identities=20% Similarity=0.265 Sum_probs=367.9
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
++.++|++++..+|+++|+++.+. ++. ..+..+.+||+||..+++++|++|.+.| .+||+|+|++
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~---------~~~-----~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~ 66 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDY---------EQD-----PAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA 66 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEcc---------CCC-----CCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence 688999999999999999986421 000 0122357999999999999999999999 6899999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCC--CceEEEEecCCCC
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK--TIKNVIYFENDGS 237 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~ 237 (721)
+|+++|++++|||+++|++++|+++ ..+.+++.++|++++++++++++...+.+.......+ ....++.++..
T Consensus 67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (578)
T PRK05850 67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-- 144 (578)
T ss_pred CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence 9999999999999999999999997 4578999999999999999999887666554322111 11112221110
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC----
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN---- 313 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~---- 313 (721)
++ ............++|+++|+|||||||.||||++||+++++.+......+..
T Consensus 145 -------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 202 (578)
T PRK05850 145 -------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG 202 (578)
T ss_pred -------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence 00 0000011123467899999999999999999999999999887665443202
Q ss_pred -CCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 314 -PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 314 -~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
...++++++++|++|.+|+.. ++.+++.|+++++.++..+... +..++..+.+++++++ .+|..+..+.....
T Consensus 203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~ 277 (578)
T PRK05850 203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKT 277 (578)
T ss_pred CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhc
Confidence 356889999999999999865 7788999999998654322211 2223344888998855 56655433322100
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC-
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG- 470 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g- 470 (721)
... .......+++|.+++||+++++++.+.+.+.++
T Consensus 278 ~~~-------------------------------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 314 (578)
T PRK05850 278 SDD-------------------------------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAP 314 (578)
T ss_pred chh-------------------------------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence 000 000011247999999999999999888887762
Q ss_pred -----CceecccccchhcccccccCCCCC-------------------------CCCccCCCcCcceEEEEecCCCCccc
Q 004961 471 -----APIGQAYGLTETCAGSTFSEWDDP-------------------------SVGRVGPPVPCCYIKLVSWDEGGYKT 520 (721)
Q Consensus 471 -----~~l~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~vG~p~p~~~v~i~d~~~~~~~~ 520 (721)
..+++.||+||++..+....+... ...++|.|. +.+++|+|++++..
T Consensus 315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~-- 391 (578)
T PRK05850 315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE-- 391 (578)
T ss_pred cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC--
Confidence 368999999998765443321110 012345554 57999999655554
Q ss_pred CCCCCCcceEEEccccccccccCCCcccccccccC---C----CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeee
Q 004961 521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD---E----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (721)
Q Consensus 521 ~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~---~----~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~ 593 (721)
+++|+.|||+|+|++++.|||++|+.|++.|..+ + ...|||+|||+|+++ ||+|+|+||+||+||+ +|++
T Consensus 392 -~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~ 468 (578)
T PRK05850 392 -CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRN 468 (578)
T ss_pred -CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCee
Confidence 4588999999999999999999999999998420 0 012799999999998 9999999999999997 6999
Q ss_pred ecchHHHHHHhcCcccceEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHH
Q 004961 594 ISLGKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKA 671 (721)
Q Consensus 594 v~~~eIE~~l~~~p~V~~~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 671 (721)
|+|.|||++|.+||.+. ++|++.+++ +.++|+|++++... .+.+ .....+.+.+++.+.++
T Consensus 469 i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~~--------~~~~-------~~~~~~~l~~~v~~~l~- 531 (578)
T PRK05850 469 HYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRGD--------SDEE-------AMDRLRTVKREVTSAIS- 531 (578)
T ss_pred cCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEeccccC--------cchh-------hhhhHHHHHHHHHHHHH-
Confidence 99999999999999864 778887765 35889988765320 0000 00122334444444433
Q ss_pred CCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 672 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 672 ~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
. +....|..+++++....| +|++||++|++|+++|++
T Consensus 532 ~--~~~~~~~~~~~~~~~~iP----~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 532 K--SHGLSVADLVLVAPGSIP----ITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred H--HhCCCceEEEEeCCCCcC----CCCCchHHHHHHHHHHHc
Confidence 1 112356777777521116 999999999999999875
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=521.21 Aligned_cols=511 Identities=19% Similarity=0.229 Sum_probs=402.3
Q ss_pred HHHHHHHHh-CCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 004961 86 ALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164 (721)
Q Consensus 86 ~~~~~~a~~-~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n 164 (721)
..+.+..+. .++.++++++. ++. ++...+||.|+.+++.++|..|.+.|+++||+|++++|+
T Consensus 68 n~~~~~~~~~~~~~~a~~~~~----------~~~-------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm 130 (626)
T KOG1175|consen 68 NCLDRHIKEKGGDKVAIIFEG----------NEG-------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPM 130 (626)
T ss_pred hhhhhhhhhcCCCCcEEEEEe----------cCC-------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccC
Confidence 344444444 48999999874 221 222348999999999999999998899999999999999
Q ss_pred cHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhH---------HHhhhccCCCc----eEEEE
Q 004961 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKK---------LSAVSSSLKTI----KNVIY 231 (721)
Q Consensus 165 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~----~~ii~ 231 (721)
.+|++++++||.++|++..++...+++.++...|++++++++|+.+..... +.+....++.. ...+.
T Consensus 131 ~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~ 210 (626)
T KOG1175|consen 131 IPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLI 210 (626)
T ss_pred ChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeE
Confidence 999999999999999999999999999999999999999999998754321 11111111111 11111
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHH-HHHhh
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~ 310 (721)
+... .....|++........ .+....+.+|+.+|+|||||||.|||+.+++....-... .....
T Consensus 211 ~~~~--------------~~d~~~~~~~~~a~~~-~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~ 275 (626)
T KOG1175|consen 211 VSRR--------------NRDLFWSLELKKASPE-HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYH 275 (626)
T ss_pred Eecc--------------cccccHHHHhhhcCCC-CCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhccee
Confidence 1100 1134555554433322 225667889999999999999999999999987555444 44445
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ .+.++|+++++..+.|+.+-+. .+.+|+.|+|+++++-..+ + +..++..+.++++|+++..|+.++.+.+.
T Consensus 276 ~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~-~-----~~~~~~~v~k~~it~l~t~pt~~r~l~~~ 348 (626)
T KOG1175|consen 276 F-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF-D-----PGRIWKILDKYKVTVLYTAPTAYRLLRRL 348 (626)
T ss_pred c-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-C-----hhhhhhhHhhcceEEEEeccHHHHHHHHh
Confidence 6 9999999999999999999777 5669999999998332222 1 23445559999999999999999988764
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
......... .++||.+.++||++.++..+++.+.+
T Consensus 349 ~~~~~~~~~---------------------------------------------~~sLk~~~S~Gepi~~~~~ew~~~~~ 383 (626)
T KOG1175|consen 349 GQEDVTSYS---------------------------------------------LKSLRTCGSVGEPINPEAWEWWKRVT 383 (626)
T ss_pred ccccccccc---------------------------------------------cceEEEEeecCccCCcchHHHHHHhc
Confidence 332211100 03799999999999999999999999
Q ss_pred CC-ceecccccchhcccccccCCCC--CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccc---cccccccC
Q 004961 470 GA-PIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFN 543 (721)
Q Consensus 470 g~-~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~~ 543 (721)
+. +|++.||+||++..+....+.. ..+++.|.|.+|+.+.|+| ++|..++. ..+.|||+++.+ +.+++||+
T Consensus 384 ~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~--~~~~G~l~~~~~~P~~~~r~~~~ 460 (626)
T KOG1175|consen 384 GLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPP--STGNGELRLKPPWPPGMFRTLWG 460 (626)
T ss_pred CccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCC--CCceeEEEEeCCCCccccccccC
Confidence 87 6999999999998887766655 6789999999999999999 57766552 117899999874 77999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
|++.-...+. ....|+|.|||.+++|+||++++.||.||+|++ +|+|+++.|||+++.+||.|.|++|+|.+++
T Consensus 461 n~erf~~~yf--~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~g 537 (626)
T KOG1175|consen 461 NHERFRAAYF--KKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKG 537 (626)
T ss_pred CHHHhhhhhc--ccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCC
Confidence 9994444433 322289999999999999999999999999998 5999999999999999999999999999987
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
+.+.|||++.++.. ..+++.++|++..+ .++.+|..|+.|++++.+ | +|.+
T Consensus 538 e~v~aFvvl~~g~~----------------------~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~L--P----kTrS 588 (626)
T KOG1175|consen 538 EVVLAFVVLKSGSH----------------------DPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGL--P----KTRS 588 (626)
T ss_pred eEEEEEEEEcCCCC----------------------ChHHHHHHHHHHHH-hhcCcccccceeEecCCC--C----cccc
Confidence 46999999987631 12455678888888 999999999999999998 6 9999
Q ss_pred cccChHHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKDD 715 (721)
Q Consensus 701 gKi~R~~l~~~~~~~ 715 (721)
||+.|++||+....+
T Consensus 589 GKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 589 GKIMRRALRKIASGK 603 (626)
T ss_pred chhHHHHHHHHhccC
Confidence 999999999987654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=535.54 Aligned_cols=479 Identities=21% Similarity=0.271 Sum_probs=384.0
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhccCC-CceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCC
Q 004961 210 SKQLKKLSAVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG 288 (721)
+.....+....+..+ .++.++..+... .....+++....... ......++.++++|||||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG 153 (502)
T PRK08276 91 AALADTAAELAAELPAGVPLLLVVAGPV-------------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTG 153 (502)
T ss_pred cchhhHHHHHhhhccccccEEEEeCCCC-------------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCC
Confidence 887776665555554 455555442211 112345554432111 12235677899999999999
Q ss_pred CcceeeeccHHHHHHHH------HHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 289 LPKGVMITHGNIVATAA------AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 289 ~PKgV~~sh~~l~~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
.||+|+++|.++..... ...... ....++++++.+|++|.+++...+.++..|+++++.+... +.
T Consensus 154 ~PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~ 224 (502)
T PRK08276 154 RPKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFD--------AE 224 (502)
T ss_pred CCceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCC--------HH
Confidence 99999999887654321 111112 2357889999999999999888778899999998754211 12
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.++..++++++|++.++|+++..+.+...... ...
T Consensus 225 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------~~~ 259 (502)
T PRK08276 225 EALALIERYRVTHSQLVPTMFVRMLKLPEEVR---------------------------------------------ARY 259 (502)
T ss_pred HHHHHHHHhCCeEEEehHHHHHHHHhCccccC---------------------------------------------CCC
Confidence 22333999999999999999998865311000 001
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTS 521 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~ 521 (721)
+.+++|.+++||++++.++.+++.+.+|..+++.||+||++.++...... ....+++|+|+ +++++|+| +++..
T Consensus 260 ~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~--- 334 (502)
T PRK08276 260 DVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNE--- 334 (502)
T ss_pred CcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCC---
Confidence 12589999999999999999999998899999999999998755543322 23457899999 88999998 55554
Q ss_pred CCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHH
Q 004961 522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 601 (721)
Q Consensus 522 ~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~ 601 (721)
++.|+.|||+++|+.++.||+++++.+.+.|. .+ +||+|||+|++|++|.+++.||.||+||+ +|++|+|.+||.
T Consensus 335 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~ 409 (502)
T PRK08276 335 LPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN--PH--GWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIEN 409 (502)
T ss_pred CcCCCceEEEEECCCccchhcCCHHHHHHHhc--CC--CceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHH
Confidence 34789999999999999999999999999986 55 89999999999999999999999999997 699999999999
Q ss_pred HHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCc
Q 004961 602 ALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFE 678 (721)
Q Consensus 602 ~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~ 678 (721)
+|.++|+|.+|+|++..++. .++++|++.++.. . + +.+.+++++.++ .+|+.|+
T Consensus 410 ~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~--------~----~~~~~~i~~~~~-~~l~~~~ 466 (502)
T PRK08276 410 LLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGAD----------A--------G----DALAAELIAWLR-GRLAHYK 466 (502)
T ss_pred HHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCC----------C--------C----hhhHHHHHHHHH-hhccCCC
Confidence 99999999999999987653 6899999865320 0 1 122356777887 8999999
Q ss_pred cccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHHHh
Q 004961 679 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQM 718 (721)
Q Consensus 679 ~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~ 718 (721)
+|..+++++++ | +|++||++|++|++.|-+.-++
T Consensus 467 ~p~~i~~~~~l--P----~t~~GKi~r~~L~~~~~~~~~~ 500 (502)
T PRK08276 467 CPRSIDFEDEL--P----RTPTGKLYKRRLRDRYWEGRQR 500 (502)
T ss_pred CCcEEEEecCC--C----CCcccchhHHHHHHHHHhhhhh
Confidence 99999999988 6 9999999999999998876654
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=528.58 Aligned_cols=484 Identities=22% Similarity=0.219 Sum_probs=376.5
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC 208 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~ 208 (721)
+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHhhhccCCCceEEEEecCCCCC-ccCCccC--CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecC
Q 004961 209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSE-KDSGVSG--GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285 (721)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG 285 (721)
+......+.... +....++........ ....... ........+++++..... ......++++++++||||
T Consensus 90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 887765544322 111122222111000 0000000 000112345665543211 112335789999999999
Q ss_pred CCCCcceeeeccHHHHH---HHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 286 STGLPKGVMITHGNIVA---TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 286 TTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
|||.||+|+++|.+..+ ........+ ++.+++++++.+|++|..+....+.++..|+++++.+... +.
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~ 233 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFD--------PE 233 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCC--------HH
Confidence 99999999997765433 333344456 7889999999999999988777777788999988843221 12
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.++..++++++|++.++|+++..+.+...... +..
T Consensus 234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------~~~ 268 (509)
T PRK12406 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVR---------------------------------------------AKY 268 (509)
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCchhhc---------------------------------------------ccC
Confidence 23344999999999999999998865211000 001
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTS 521 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~ 521 (721)
..+++|.+++||+++++++.+++.+.+++.+++.||+||++.+++..... ...++++|+|+|+++++|+| +++..+
T Consensus 269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~-- 345 (509)
T PRK12406 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPL-- 345 (509)
T ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCC--
Confidence 12589999999999999999999998899999999999999765543322 23457999999999999999 555543
Q ss_pred CCCCCcceEEEccccccc-cccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHH
Q 004961 522 DKPMPRGEIVVGGFNVTA-GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE 600 (721)
Q Consensus 522 ~~~g~~GEl~v~g~~v~~-gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE 600 (721)
+.|+.|||+++|++++. ||+++++.+.+.+ .+ +||+|||+|++|+||++++.||.||+||+ +|++|+|.+||
T Consensus 346 -~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~---~~--~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE 418 (509)
T PRK12406 346 -PQGEIGEIYSRIAGNPDFTYHNKPEKRAEID---RG--GFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIE 418 (509)
T ss_pred -CCCCceEEEEECCccccccccCCchhccccc---CC--CCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHH
Confidence 47889999999998875 9999999888776 66 89999999999999999999999999996 69999999999
Q ss_pred HHHhcCcccceEEEEecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC
Q 004961 601 AALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF 677 (721)
Q Consensus 601 ~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 677 (721)
++|.++|+|.+++|++.++.. .++++|++.+.. .. ..++|+++++ +.|++|
T Consensus 419 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~---------------~~~~l~~~l~-~~l~~~ 472 (509)
T PRK12406 419 AVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA----------TL---------------DEADIRAQLK-ARLAGY 472 (509)
T ss_pred HHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCC----------CC---------------CHHHHHHHHH-HhcccC
Confidence 999999999999999987653 478888876431 00 0267778887 899999
Q ss_pred ccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHH
Q 004961 678 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 715 (721)
Q Consensus 678 ~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 715 (721)
++|..+++++++ | +|++||++|++|++.|.+.
T Consensus 473 ~~P~~i~~~~~i--P----~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 473 KVPKHIEIMAEL--P----REDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred CCCcEEEEeccC--C----CCCccchhHHHHHHHHHhh
Confidence 999999999988 6 8999999999999887653
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-59 Score=526.14 Aligned_cols=496 Identities=21% Similarity=0.298 Sum_probs=368.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+.++.+.+...+..+|+.+++... ++. +.+||.||+++++++|++|.+.|+++||+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l 59 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP-----------DAP----------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAV 59 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC-----------CCc----------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 357889999999999999988643 322 47999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHH-------HHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEec
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL-------IHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (721)
+++|+++|+++++||+++|++++|+++..+.+++ .++++.++++.+++++.....+..+...
T Consensus 60 ~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------- 128 (545)
T PRK07768 60 LAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK----------- 128 (545)
T ss_pred ECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc-----------
Confidence 9999999999999999999999999998886544 5567778999999987654433221100
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
...+.+++++..... .......++++++|+|||||||.||||+++|+++...+......+ +
T Consensus 129 ---------------~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~ 189 (545)
T PRK07768 129 ---------------GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-E 189 (545)
T ss_pred ---------------CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-C
Confidence 122344555543221 122345679999999999999999999999999999888877777 7
Q ss_pred CCCC-cEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 314 PGRS-DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 314 ~~~~-d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
+.++ |++++.+|++|.+++.. .+.++..|+++++..+..+... +..+...++++++|++..+|.++..+.+...
T Consensus 190 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 265 (545)
T PRK07768 190 FDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLR 265 (545)
T ss_pred CCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHh
Confidence 7776 89999999999999876 5567999999887544332211 1122333899999999888877776654221
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh---
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC--- 468 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~--- 468 (721)
..... +..+++++|.+++||+++++++.+.+.+.
T Consensus 266 ~~~~~-------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~ 302 (545)
T PRK07768 266 RQAKP-------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGAR 302 (545)
T ss_pred ccccc-------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHh
Confidence 10000 00122589999999999999998888763
Q ss_pred hCC---ceecccccchhcccccccCCC--------------------------CCCCCccCCCcCcceEEEEecCCCCcc
Q 004961 469 MGA---PIGQAYGLTETCAGSTFSEWD--------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYK 519 (721)
Q Consensus 469 ~g~---~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~ 519 (721)
+|. .+++.||+||++..++..... ....+++|+|+|+++++|+| ++++.+
T Consensus 303 ~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~ 381 (545)
T PRK07768 303 FGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL 381 (545)
T ss_pred cCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC
Confidence 454 499999999998765443221 11236899999999999999 666654
Q ss_pred cCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHH
Q 004961 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKV 599 (721)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eI 599 (721)
++|+.|||+++|+.++.||++++......+ .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.||
T Consensus 382 ---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~ei 452 (545)
T PRK07768 382 ---PPRGVGVIELRGESVTPGYLTMDGFIPAQD---AD--GWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDI 452 (545)
T ss_pred ---CCCCEEEEEEccCcccccccCCCCCccccc---CC--CeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHH
Confidence 478999999999999999998654433322 44 89999999999999999999999999998 5999999999
Q ss_pred HHHHhcCcccceEEEEecC--CC--c-eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCC
Q 004961 600 EAALISSDYVDNIMIHADP--FH--N-YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674 (721)
Q Consensus 600 E~~l~~~p~V~~~~V~g~~--~~--~-~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L 674 (721)
|++|.+||+|.+++|++.+ +. . .+++++.+.... ++.....+.+.+++.+. ..+
T Consensus 453 E~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~~l~~~~~~~l~-~~~ 511 (545)
T PRK07768 453 ERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--------------------DPAEVRRIRHQVAHEVV-AEV 511 (545)
T ss_pred HHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--------------------cHHHHHHHHHHHHHHHH-HHh
Confidence 9999999999998877643 22 2 233333332211 01111122233333322 111
Q ss_pred CCCccccEEEeeC--CCCCCCCCccCcccccChHHHHHHHH
Q 004961 675 DKFEIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 675 ~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
. .+|..+.+++ .+ | +|++||++|+.|+++|.
T Consensus 512 ~--~~p~~v~~v~~~~l--P----~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 512 G--VRPRNVVVLGPGSI--P----KTPSGKLRRANAAELVT 544 (545)
T ss_pred C--CCccEEEEeCCCcC--C----CCCchhHHHHHHHHhcC
Confidence 1 4788898887 34 6 99999999999998774
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-59 Score=511.38 Aligned_cols=432 Identities=25% Similarity=0.354 Sum_probs=355.9
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECcc
Q 004961 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (721)
Q Consensus 132 Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (721)
||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcc
Q 004961 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPK 291 (721)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 291 (721)
...... ....+.++................+++++++|||||||.||
T Consensus 81 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK 127 (436)
T TIGR01923 81 LEEKDF---------------------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK 127 (436)
T ss_pred ccccce---------------------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence 421100 00011111111111111123345688999999999999999
Q ss_pred eeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceee
Q 004961 292 GVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL 371 (721)
Q Consensus 292 gV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 371 (721)
+|+++|+++...+......+ ++.++|++++.+|++|.+++..++.++..|+++++.+... .++..++++
T Consensus 128 ~v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~----------~~~~~l~~~ 196 (436)
T TIGR01923 128 AVPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN----------QLLEMIANE 196 (436)
T ss_pred EEEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH----------HHHHHHHHh
Confidence 99999999999998888888 8999999999999999999987888899999999865432 123339999
Q ss_pred cceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEE
Q 004961 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451 (721)
Q Consensus 372 ~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~ 451 (721)
++|++.++|+++..+.+.... .+++|.++
T Consensus 197 ~~t~~~~~P~~l~~l~~~~~~---------------------------------------------------~~~l~~~~ 225 (436)
T TIGR01923 197 RVTHISLVPTQLNRLLDEGGH---------------------------------------------------NENLRKIL 225 (436)
T ss_pred CCeEEEeHHHHHHHHHhCcCC---------------------------------------------------CCceEEEE
Confidence 999999999999888652100 03799999
Q ss_pred ecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceE
Q 004961 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI 530 (721)
Q Consensus 452 ~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl 530 (721)
+||+++++++.++++. .|+.+++.||+||++..++...... ....++|+|+++++++|.+.+. ++.|||
T Consensus 226 ~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~---------~~~Gel 295 (436)
T TIGR01923 226 LGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK---------EGHGEI 295 (436)
T ss_pred ECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC---------CCceEE
Confidence 9999999999888876 5999999999999987655443322 2223599999999999954121 267999
Q ss_pred EEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccc
Q 004961 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610 (721)
Q Consensus 531 ~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~ 610 (721)
+++|+.++.||+++++.+...+ .+ |||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.++|.|.
T Consensus 296 ~v~~~~~~~gy~~~~~~~~~~~---~~--~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~ 369 (436)
T TIGR01923 296 MVKGANLMKGYLYQGELTPAFE---QQ--GWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQ 369 (436)
T ss_pred EEECCccchhhCCChhhhhhhh---cC--CCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCee
Confidence 9999999999999888887765 55 89999999999999999999999999997 699999999999999999999
Q ss_pred eEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeC
Q 004961 611 NIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMP 687 (721)
Q Consensus 611 ~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~ 687 (721)
+++|++.++. ..++++|++.++. + .+++.++++ +.|+.|++|..+++++
T Consensus 370 ~~~v~~~~~~~~~~~~~~~v~~~~~~----------~-----------------~~~l~~~l~-~~l~~~~~p~~i~~~~ 421 (436)
T TIGR01923 370 EAVVVPKPDAEWGQVPVAYIVSESDI----------S-----------------QAKLIAYLT-EKLAKYKVPIAFEKLD 421 (436)
T ss_pred EEEEeCCcchhcCCeeEEEEEECCCC----------C-----------------HHHHHHHHH-HhhhCCCCCeEEEEec
Confidence 9999998765 3577888876421 0 256777787 8899999999999999
Q ss_pred CCCCCCCCccCcccccChHHH
Q 004961 688 EPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 688 ~~~~p~~~~~t~~gKi~R~~l 708 (721)
++ | +|++||++|++|
T Consensus 422 ~i--P----~t~~GK~~r~~L 436 (436)
T TIGR01923 422 EL--P----YNASGKILRNQL 436 (436)
T ss_pred CC--C----CCCCCceecccC
Confidence 88 6 999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=465.96 Aligned_cols=503 Identities=21% Similarity=0.233 Sum_probs=393.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...|++++|..+++++|+++|+++.. . .+.+||+|++++++++|+.|...|++.||.||
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~----------~-----------~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VA 133 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEG----------P-----------FQSLTFAELDARSNRVANYLHAEGLKAGDVVA 133 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeC----------C-----------CceeeHHHHHHHHHHHHHHHHHhhcccCCEEE
Confidence 35799999999999999999999852 1 23699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCc-eEEEEecCCCCC
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSE 238 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~ 238 (721)
++|+|++|++..+||.+++|++...||+++..+.|.|.|+.++++++|++++..+.+.++.+.+... -++...+.....
T Consensus 134 L~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~ 213 (649)
T KOG1179|consen 134 LLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP 213 (649)
T ss_pred EecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988887774333221 222222221111
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCC---CCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
....++...++.....+.+ ....+-.++++.+|||||||.||++++||..+......+...+ +++
T Consensus 214 -----------~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~ 281 (649)
T KOG1179|consen 214 -----------DGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMT 281 (649)
T ss_pred -----------chHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 1112222222222222211 1334567899999999999999999999999999888788888 999
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEee---CccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
++|+++..+|++|..+.+. +..++..|+|+++ ++...++++ ..++++|++..+-.+.+.|++...
T Consensus 282 ~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~ 350 (649)
T KOG1179|consen 282 ADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPP 350 (649)
T ss_pred ccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCC
Confidence 9999999999999988765 7789999999999 777766666 999999999999999999987544
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
...++. .++|.++ |.-+.+++++.|.++||.
T Consensus 351 ~~~er~-----------------------------------------------HkVRla~--GNGLR~diW~~Fv~RFg~ 381 (649)
T KOG1179|consen 351 SPEERQ-----------------------------------------------HKVRLAY--GNGLRPDIWQQFVKRFGI 381 (649)
T ss_pred ChhhcC-----------------------------------------------ceEEEEe--cCCCCchHHHHHHHHcCC
Confidence 333221 3677766 888999999999999997
Q ss_pred c-eecccccchhcccccccCCCCCCCCccCCC------cCcceEEEEecC-------CCCcccCCCCCCcceEEE--ccc
Q 004961 472 P-IGQAYGLTETCAGSTFSEWDDPSVGRVGPP------VPCCYIKLVSWD-------EGGYKTSDKPMPRGEIVV--GGF 535 (721)
Q Consensus 472 ~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p------~p~~~v~i~d~~-------~~~~~~~~~~g~~GEl~v--~g~ 535 (721)
+ +.+.||+||........ +.+.|.+|+- +--+++-=+|++ ..+.|..|++||.|.+.- .-.
T Consensus 382 ~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k 458 (649)
T KOG1179|consen 382 IKIGEFYGATEGNSNLVNY---DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQK 458 (649)
T ss_pred CeEEEEeccccCcceeeee---cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccC
Confidence 6 99999999987654433 3344555431 111222223433 345566799999997652 223
Q ss_pred cc---cccccCCCcccccccccC--CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccc
Q 004961 536 NV---TAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610 (721)
Q Consensus 536 ~v---~~gY~~~~~~t~~~f~~~--~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~ 610 (721)
.- |.||.+++++|+++...+ ..|+-||.|||+-.+|+.|+|||.+|..|.+.++ ||||+..|||.+|....+++
T Consensus 459 ~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWK-GENVsTtEVe~~l~~~~~~~ 537 (649)
T KOG1179|consen 459 NPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWK-GENVSTTEVEDVLSALDFLQ 537 (649)
T ss_pred CchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeec-CCcccHHHHHHHHhhhcccc
Confidence 33 899999888887765421 4466899999999999999999999999999997 99999999999999999999
Q ss_pred eEEEEecCCCc----eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEee
Q 004961 611 NIMIHADPFHN----YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLM 686 (721)
Q Consensus 611 ~~~V~g~~~~~----~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~ 686 (721)
||.|+|+.-+. .-.|.|+.++... ...+.+-+.++ ..||+|.+|..+.+.
T Consensus 538 dv~VYGV~VP~~EGRaGMAaI~~~p~~~-------------------------~d~~~l~~~l~-~~LP~YA~P~FlRl~ 591 (649)
T KOG1179|consen 538 DVNVYGVTVPGYEGRAGMAAIVLDPTTE-------------------------KDLEKLYQHLR-ENLPSYARPRFLRLQ 591 (649)
T ss_pred ceeEEEEecCCccCccceEEEEecCccc-------------------------chHHHHHHHHH-hhCccccchHHHHHH
Confidence 99999975332 2556666444321 11356677777 899999999999999
Q ss_pred CCCCCCCCCccCcccccChHHHHHH
Q 004961 687 PEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 687 ~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+++ . +|.|-|.++.+|.+.
T Consensus 592 ~~i--~----~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 592 DEI--E----KTGTFKLQKTELQKE 610 (649)
T ss_pred hhh--h----cccchhhHHHHHHHc
Confidence 998 4 899999999999765
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-57 Score=490.96 Aligned_cols=397 Identities=18% Similarity=0.158 Sum_probs=331.3
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
.+||+||.++++++|+.|. .|+++|++|+|+++|+++++++++||+++|++++|+++..+.+++..++++++++.++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 7999999999999999985 689999999999999999999999999999999999999999999999999999999997
Q ss_pred ccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 004961 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 289 (721)
+.... .. . .....++++++++|||||||.
T Consensus 87 ~~~~~---------------~~--------------------------------~----~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 87 ESDFT---------------KL--------------------------------E----AVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred Ccccc---------------cc--------------------------------c----CCCCCCCCceEEEECCCCCCC
Confidence 63100 00 0 012356789999999999999
Q ss_pred cceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccc
Q 004961 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368 (721)
Q Consensus 290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i 368 (721)
||||++||+++.+.+......+ .+..+|+.+..+|++|.+++.. ++.++..|+++++.+.... ..++..+
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~l 186 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNP--------KFALNIL 186 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCH--------HHHHHHH
Confidence 9999999999999888888777 8889999999999999999855 7788999999988432211 1122338
Q ss_pred eeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEE
Q 004961 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448 (721)
Q Consensus 369 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 448 (721)
+++++|+++++|+++..+.+.... ..+++
T Consensus 187 ~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~~l~ 215 (414)
T PRK08308 187 RNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TFQFH 215 (414)
T ss_pred HHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------ccccc
Confidence 999999999999999988652100 02678
Q ss_pred EEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcc
Q 004961 449 FMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528 (721)
Q Consensus 449 ~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~G 528 (721)
.+++||+++++++.+.+++. +.++++.||+||++.++... .....+++|+|+|++++++.+ + .++.|
T Consensus 216 ~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p~~~~~~~~~~-~---------~~~~g 282 (414)
T PRK08308 216 AVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--DMKSHLDLGNPLPHVSVSAGS-D---------ENAPE 282 (414)
T ss_pred EEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC--CCCCCCccCccCCCeEEEEec-C---------CCCCc
Confidence 89999999999999988876 67899999999998644322 223457899999999999875 2 23669
Q ss_pred eEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcc
Q 004961 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608 (721)
Q Consensus 529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~ 608 (721)
||++++. + +||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||+++.++|+
T Consensus 283 el~v~~~---------------------~--~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~ 338 (414)
T PRK08308 283 EIVVKMG---------------------D--KEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPG 338 (414)
T ss_pred eEEEEcC---------------------C--ceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCC
Confidence 9999642 2 79999999999999999999999999997 5999999999999999999
Q ss_pred cceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEe
Q 004961 609 VDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKL 685 (721)
Q Consensus 609 V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~ 685 (721)
|.+|+|++.+++ +.++++++..... + .++++++++ ++|+.|++|..+++
T Consensus 339 v~~a~v~~~~~~~~~~~~~~~v~~~~~~----------~-----------------~~~l~~~l~-~~l~~~~~P~~i~~ 390 (414)
T PRK08308 339 VQEAVVYRGKDPVAGERVKAKVISHEEI----------D-----------------PVQLREWCI-QHLAPYQVPHEIES 390 (414)
T ss_pred eeEEEEEeccCCCCCceEEEEEEeCCCC----------C-----------------HHHHHHHHH-HhCccccCCcEEEE
Confidence 999999998765 3577888765321 0 257788888 89999999999999
Q ss_pred eCCCCCCCCCccCcccccChHHHH
Q 004961 686 MPEPWTPEAGLVTAALKIKREQLK 709 (721)
Q Consensus 686 ~~~~~~p~~~~~t~~gKi~R~~l~ 709 (721)
++.+ | +|++||++|+.|+
T Consensus 391 v~~i--P----~t~~GKi~r~~~~ 408 (414)
T PRK08308 391 VTEI--P----KNANGKVSRKLLE 408 (414)
T ss_pred eccC--C----CCCCcCeehhhhh
Confidence 9988 6 9999999999553
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=493.31 Aligned_cols=406 Identities=32% Similarity=0.511 Sum_probs=317.1
Q ss_pred HHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHH
Q 004961 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE 167 (721)
Q Consensus 88 ~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e 167 (721)
|+++|+++||++|+++ + ++ +++||+||.++++++|..|+++|+++||+|+|+++|+++
T Consensus 1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~ 58 (417)
T PF00501_consen 1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE 58 (417)
T ss_dssp HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence 7899999999999985 1 22 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE----CccchhHHHhhhccCCCceEEEEecCCCCCccCCc
Q 004961 168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243 (721)
Q Consensus 168 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 243 (721)
++++++||+++|++++|++|.++.+++.++++.++++++|+ +......+............++.++......
T Consensus 59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (417)
T PF00501_consen 59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPK---- 134 (417)
T ss_dssp HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTT----
T ss_pred eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccc----
Confidence 99999999999999999999999999999999999999997 2222233444444334455566655332111
Q ss_pred cCCCCCceEeeHHHHHhcCCCCCCCCCC-CCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH--hhCCCCCCCcEE
Q 004961 244 SGGISNWTVSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK--TLIPNPGRSDVY 320 (721)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~d~~ 320 (721)
........... ... .. ..++++++++|||||||.||+|+++|+++++.+..+. ... .++ |++
T Consensus 135 ------~~~~~~~~~~~---~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~ 199 (417)
T PF00501_consen 135 ------KEALKSASLSD---EPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRI 199 (417)
T ss_dssp ------CHHHHHHHHCH---CSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEE
T ss_pred ------ccccccccccc---ccc---cCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceE
Confidence 00000000000 000 00 0569999999999999999999999999999988864 223 334 699
Q ss_pred EeccChHHHHHH-HHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004961 321 LAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (721)
Q Consensus 321 l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (721)
++++|++|.+++ ...+.++..|+++++.+.....+. ..++..++++++|+++++|++++.+.++.... ..
T Consensus 200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~--- 270 (417)
T PF00501_consen 200 LSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDP-----ESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK--- 270 (417)
T ss_dssp EESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHH-----HHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---
T ss_pred Eeecccccccccccccccccccccccccccccccccc-----ccchhccccccccccccccccccccccccccc-cc---
Confidence 999999999999 668899999999999665443111 11223399999999999999999997632111 00
Q ss_pred hhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC-ceecccc
Q 004961 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYG 478 (721)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~-~l~~~YG 478 (721)
.+...++++|.+++||+++++++.+.+++.++. ++++.||
T Consensus 271 ---------------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 311 (417)
T PF00501_consen 271 ---------------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYG 311 (417)
T ss_dssp ---------------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEE
T ss_pred ---------------------------------------ccccccccccccccccccCChhhccccccccccccceeccc
Confidence 000122479999999999999999999999887 9999999
Q ss_pred cchhcccccccC--CCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 479 LTETCAGSTFSE--WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 479 ~TE~~~~~~~~~--~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
+||++.+++... ......+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.||+++|+.|.+.|. .
T Consensus 312 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~---~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~--~ 386 (417)
T PF00501_consen 312 STETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPL---PPGEPGEIVIRGPNVFSGYYNDPELTAEAFI--D 386 (417)
T ss_dssp EGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBE---STTSEEEEEEESTTSBSEETTBHHHHHHHEE--T
T ss_pred ccccceeeecccccccccccccccccccccccccccccccccc---cccccccccccCCccceeeeccccccccccc--c
Confidence 999999887553 22235689999999999999996557765 4889999999999999999999999999996 4
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcC
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~ 589 (721)
+ |||+|||+|++|+||+|+++||.||+||+|
T Consensus 387 ~--~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 387 D--GWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp T--SEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred c--cceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 4 799999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-53 Score=460.40 Aligned_cols=397 Identities=25% Similarity=0.295 Sum_probs=323.1
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECc
Q 004961 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (721)
Q Consensus 132 Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (721)
||+||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCc
Q 004961 211 KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290 (721)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P 290 (721)
.....+..... .++.+... +..................++++++++|||||||.|
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p 135 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP 135 (408)
T ss_pred chhhhccccCC------ceEEechh-------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence 76554432211 11111100 000000000000111124578999999999999999
Q ss_pred ceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCcccccee
Q 004961 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370 (721)
Q Consensus 291 KgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (721)
|+|.+||+++...+......+ .+.++|++++.+|++|.+++...+.++..|+++++.+...... ...+...+++
T Consensus 136 K~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-----~~~~~~~~~~ 209 (408)
T TIGR01733 136 KGVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD-----AALLAALIAE 209 (408)
T ss_pred CEEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC-----HHHHHHHHHH
Confidence 999999999999999988887 8889999999999999999988999999999999855433311 1122333788
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEE
Q 004961 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (721)
Q Consensus 371 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v 450 (721)
+++|.+.++|.+++.+.+... ...+++|.+
T Consensus 210 ~~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v 239 (408)
T TIGR01733 210 HPVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLV 239 (408)
T ss_pred cCceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEE
Confidence 899999999999999876422 012489999
Q ss_pred EecCCCCCHHHHHHHHHhhC-CceecccccchhcccccccCCCCC-----CCCccCCCcCcceEEEEecCCCCcccCCCC
Q 004961 451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524 (721)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~ 524 (721)
++||+++++++.+.+.+.++ +.+++.||+||++.+++....... +..++|+|+++++++|+|+ ++.. ++.
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~---~~~ 315 (408)
T TIGR01733 240 ILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-DLRP---VPV 315 (408)
T ss_pred EEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-CCCC---CCC
Confidence 99999999999999999887 899999999999987753322211 2678999999999999994 4554 457
Q ss_pred CCcceEEEccccccccccCCCcccccccccCC----CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHH
Q 004961 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE 600 (721)
Q Consensus 525 g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~----~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE 600 (721)
|+.|||+|+|++++.||+++++.|.+.|..++ ++..||+|||+|++|++|+++|.||.||+|++ +|++|+|.+||
T Consensus 316 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie 394 (408)
T TIGR01733 316 GVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIE 394 (408)
T ss_pred CCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHH
Confidence 89999999999999999999999999885321 21229999999999999999999999999997 69999999999
Q ss_pred HHHhcCcccceEEE
Q 004961 601 AALISSDYVDNIMI 614 (721)
Q Consensus 601 ~~l~~~p~V~~~~V 614 (721)
+++.+||.|.+|+|
T Consensus 395 ~~l~~~~~v~~~~v 408 (408)
T TIGR01733 395 AALLRHPGVREAVV 408 (408)
T ss_pred HHHhcCcchhhhcC
Confidence 99999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=407.30 Aligned_cols=323 Identities=25% Similarity=0.365 Sum_probs=258.4
Q ss_pred CCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCc
Q 004961 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS 349 (721)
Q Consensus 270 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~ 349 (721)
....++|+++++|||||||.||||+++|+++.+.+......+ ...++++..+|++|.+++...+.+++.|+++++.+
T Consensus 30 ~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~ 106 (358)
T PRK07824 30 GEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD 106 (358)
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC
Confidence 345578999999999999999999999999998887665543 35578999999999999988888899999887732
Q ss_pred cccccccchhhccCccccceeec--ceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCch
Q 004961 350 TLTMTDTSSKIKKGTKGDVSVLK--PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427 (721)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (721)
.....+. ..++..+++++ .++...+|..+..+..+...
T Consensus 107 ~~~~~~~-----~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~----------------------------------- 146 (358)
T PRK07824 107 VSAGFDP-----TALPRAVAELGGGRRYTSLVPMQLAKALDDPAA----------------------------------- 146 (358)
T ss_pred cCCCcCH-----HHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-----------------------------------
Confidence 2111111 11233377776 56667788877665432100
Q ss_pred hhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcce
Q 004961 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507 (721)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~ 507 (721)
....+++|.+++||+++++++.+.+.+ +++++++.||+||++..+. ..|+|+|+++
T Consensus 147 -------------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~ 202 (358)
T PRK07824 147 -------------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVR 202 (358)
T ss_pred -------------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCE
Confidence 001148999999999999999988876 5999999999999875432 3689999999
Q ss_pred EEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEE
Q 004961 508 IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587 (721)
Q Consensus 508 v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik 587 (721)
++|.| |||+++|+.++.||+++++.+ .|. .+ |||+|||+|++ ++|.|+|+||.||+||
T Consensus 203 v~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~~--~~--g~~~TGDl~~~-~~g~l~i~GR~~d~i~ 260 (358)
T PRK07824 203 VRVED---------------GRIALGGPTLAKGYRNPVDPD--PFA--EP--GWFRTDDLGAL-DDGVLTVLGRADDAIS 260 (358)
T ss_pred EEecC---------------CEEEEecCccccccCCCcccc--ccc--CC--CceecccEEEE-eCCEEEEEeccCCeEE
Confidence 99843 899999999999999988754 343 45 79999999999 8999999999999999
Q ss_pred cCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHH
Q 004961 588 LQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664 (721)
Q Consensus 588 ~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (721)
+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+...+. . ...++
T Consensus 261 ~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~----------~---------------~~~~~ 314 (358)
T PRK07824 261 T-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP----------A---------------PTLEA 314 (358)
T ss_pred E-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC----------C---------------cCHHH
Confidence 7 6999999999999999999999999998765 3588888765421 0 11367
Q ss_pred HHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 665 LSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 665 l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
|+++++ ++|+.|++|..|++++++ | +|++||++|++|+++|.+
T Consensus 315 i~~~~~-~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 315 LRAHVA-RTLDRTAAPRELHVVDEL--P----RRGIGKVDRRALVRRFAG 357 (358)
T ss_pred HHHHHH-hhCccccCCCEEEEecCC--C----CCCCccccHHHHHHHhhc
Confidence 888888 899999999999999988 6 999999999999999865
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=414.43 Aligned_cols=437 Identities=23% Similarity=0.283 Sum_probs=346.5
Q ss_pred ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcE
Q 004961 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (721)
Q Consensus 50 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (721)
+..++++...++ +. .+ . ...+.+...++++.|.+++.+.|++.|+.. .+ .
T Consensus 202 ~~~l~ll~~~e~-~~-~~-~----~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~------------~~-----------~ 251 (642)
T COG1020 202 LSALPLLLPSER-EV-WN-A----LAAPIPLRLTIHLLFEEQAATTPDAVALVR------------GG-----------Q 251 (642)
T ss_pred cccCCCCCHHHH-hh-cc-c----cccCCCccchHHHHHHHHHHhCCCceeEec------------CC-----------C
Confidence 667777777777 11 11 2 223334457999999999999999999874 22 2
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
.+||+|+..+++++|+.|.+.|+.++++|+++++++++++++++|++++|+.++|+++.++.+++.+++++++++.+++.
T Consensus 252 ~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~ 331 (642)
T COG1020 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ 331 (642)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEec
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 004961 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 289 (721)
........ .++. +..+... .......+. .....+++.+|++|||||||.
T Consensus 332 ~~~~~~~~----~~~~----~~~~~~~----------------------~~~~~~~~~-~~~~~~~~~ayiiytsgstg~ 380 (642)
T COG1020 332 AHLRVDDV----GLPG----LALDDAL----------------------SEIPDTDPI-PQALLGDALAYIIYTSGSTGQ 380 (642)
T ss_pred cccccccc----cCCc----ccccccc----------------------ccCCccCcc-cccCCCCCeEEEEEccCCCCC
Confidence 33221100 1110 1100000 000000000 123456899999999999999
Q ss_pred cceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccce
Q 004961 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369 (721)
Q Consensus 290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (721)
||||+++|+++.+.+.+....+ .++..|+++...++.++.+...++.++..|+++++.......+... +...+.
T Consensus 381 Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~-----l~~~~~ 454 (642)
T COG1020 381 PKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAA-----LLELLE 454 (642)
T ss_pred CCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHH-----HHHHHH
Confidence 9999999999999888888887 9999999999999999999999999999999999966655555422 233378
Q ss_pred eecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEE
Q 004961 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449 (721)
Q Consensus 370 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 449 (721)
++++|++..+|.++..+.......... ...+.+|.
T Consensus 455 ~~~vt~~~~~p~~~~~~~~~~~~~~~~---------------------------------------------~~~~~lr~ 489 (642)
T COG1020 455 AQGITVLLLVPLLLRLLLLAALAPDLI---------------------------------------------SPCERLRQ 489 (642)
T ss_pred HcCCEEEEecHHHHHHHHhchhhcccc---------------------------------------------CCcccccE
Confidence 899999999999999887631100000 00024899
Q ss_pred EEecCCCCCHHHHHHHHHhh--CCceecccccchhcccccccCCCCCC--CCccCCCcCcceEEEEecCCCCcccCCCCC
Q 004961 450 MICGGAPLSADSQRFINICM--GAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525 (721)
Q Consensus 450 v~~gG~~l~~~~~~~~~~~~--g~~l~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g 525 (721)
+++||+.++..+...+.... ...+.|.||+||++..++........ ..++|+|++|+.++|+| +.+.. ++.|
T Consensus 490 ~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~---~p~g 565 (642)
T COG1020 490 LLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRP---LPLG 565 (642)
T ss_pred EEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCc---CCCC
Confidence 99999999999988776654 46899999999977766554433322 36899999999999998 55554 4578
Q ss_pred CcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhc
Q 004961 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
..||+++.|.++.+||+++|+.|.+.|. .+ ++|+|||+++++.||.+.++||.|+++|++ |++|+++|||..+.+
T Consensus 566 v~gel~i~g~~~a~gy~~~p~lt~~~f~--~~--~~y~tgD~~r~~~dg~~e~lgr~D~qvki~-g~Riel~eie~~l~~ 640 (642)
T COG1020 566 VPGELYIAGLGLALGYLNRPDLTAERFI--AL--RLYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELGEIEAALAE 640 (642)
T ss_pred CCeeeEECCcchhhhhcCChhhhHHHhh--hc--cCccCCCeeeECCCCeEEEeccccceeEec-eEecCcHHHHHHHhc
Confidence 8899999999999999999999999997 44 499999999999999999999999999996 999999999999988
Q ss_pred Cc
Q 004961 606 SD 607 (721)
Q Consensus 606 ~p 607 (721)
+|
T Consensus 641 ~~ 642 (642)
T COG1020 641 QP 642 (642)
T ss_pred CC
Confidence 75
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=340.49 Aligned_cols=288 Identities=20% Similarity=0.179 Sum_probs=220.4
Q ss_pred CCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC--CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccc
Q 004961 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL 351 (721)
Q Consensus 275 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~ 351 (721)
+..++++|||||||.||||++||+++.+.+..+...+ ++. +.|++++.+|++|.+++.. ++.++..|+++++....
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence 4468999999999999999999999999888877766 554 3468999999999999754 67788899999874322
Q ss_pred cccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhH
Q 004961 352 TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431 (721)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (721)
..... +..++. .|+++++|++++.+.+..
T Consensus 174 ~~~~~--------l~~i~~--~t~~~~~P~~l~~l~~~~----------------------------------------- 202 (386)
T TIGR02372 174 PASGI--------MRHARP--GDLIVGTPFIWEQLADLD----------------------------------------- 202 (386)
T ss_pred ChHHH--------HHhhcc--CCEEEECcHHHHHHHhhC-----------------------------------------
Confidence 11111 111332 389999999999886520
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC-ceecccccchhcccccccCCCCCCCCccCCCcCcceEEE
Q 004961 432 DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510 (721)
Q Consensus 432 ~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i 510 (721)
...++++. ++||+++++++.+.+++. +. .+++.||+||++++++... ++..|+|+|++++++
T Consensus 203 ----------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 203 ----------YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA 265 (386)
T ss_pred ----------cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC
Confidence 00135675 688999999999988875 64 6999999999987554321 234677888766543
Q ss_pred EecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCC
Q 004961 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590 (721)
Q Consensus 511 ~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~ 590 (721)
+ ++. + .| +. .|++|||+|++|++|+|+|+||+||+||+ +
T Consensus 266 -~--~~~-----------~---~g---------------------~~--~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~ 304 (386)
T TIGR02372 266 -D--TLS-----------S---AG---------------------LA--RRLDLQDRLAWDKDGGFTILGRKDEILQV-G 304 (386)
T ss_pred -C--Ccc-----------C---CC---------------------cc--ceeecCceEEEcCCCcEEEecccCCEEEE-C
Confidence 1 110 0 01 11 48999999999999999999999999997 6
Q ss_pred eeeecchHHHHHHhcCcccceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHH
Q 004961 591 GEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAK 670 (721)
Q Consensus 591 G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 670 (721)
|++|+|.+||++|.+||+|.+|+|... ...+.|+|++.++.. .+.+.++|+++++
T Consensus 305 G~~V~p~eIE~~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~~-----------------------~~~~~~~l~~~~~ 359 (386)
T TIGR02372 305 GVNVSPGHVRDILERNPRVRAAAVRLD--GRRLKAFIVVAEDAD-----------------------EAELEIELRATAA 359 (386)
T ss_pred CEEEcHHHHHHHHHcCCCceEEEEEcC--CceEEEEEEECCCCC-----------------------hHHHHHHHHHHHH
Confidence 999999999999999999999999753 457889998875320 0123468888888
Q ss_pred HCCCCCCccccEEEeeCCCCCCCCCccCcccccC
Q 004961 671 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 704 (721)
Q Consensus 671 ~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~ 704 (721)
++|+.|++|..+.+++++ | +|++||++
T Consensus 360 -~~L~~~~~P~~i~~~~~l--P----~t~~GKi~ 386 (386)
T TIGR02372 360 -RHLPAPARPDRFRFGTEL--P----RTGAGKLA 386 (386)
T ss_pred -HhCCCCCCCcEEEEcccC--C----CCCCCCcC
Confidence 899999999999999998 6 99999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=311.35 Aligned_cols=329 Identities=16% Similarity=0.168 Sum_probs=227.1
Q ss_pred CCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH---hhCCCCCCCcEEEeccChHHHHH-HHHHHHHHHhcceEeeC
Q 004961 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCAIGYG 348 (721)
Q Consensus 273 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g-~~~~~~~l~~G~~~~~~ 348 (721)
..+++++++|||||||.||+|.+||+++........ ..+ ++.++|++++..++.+..+ +...+.++..|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 456789999999999999999999999876644332 234 7889999988766554333 33345567788888764
Q ss_pred ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchh
Q 004961 349 STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428 (721)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (721)
+.... ..++..|++++||+++++|+++..|.+........
T Consensus 152 ~~~~~--------~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~-------------------------------- 191 (422)
T TIGR02155 152 SGGQT--------EKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGID-------------------------------- 191 (422)
T ss_pred CCCCH--------HHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCC--------------------------------
Confidence 33221 11233399999999999999999987643211000
Q ss_pred hhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCc--Ccc
Q 004961 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--PCC 506 (721)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--p~~ 506 (721)
....++|.+++||+++++++.+.+++.+|+++++.||+||+++......... ...|.++ +++
T Consensus 192 -------------~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~---~~~g~~~~~~~~ 255 (422)
T TIGR02155 192 -------------PAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE---TQDGLHIWEDHF 255 (422)
T ss_pred -------------cccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc---cCCCceEecCee
Confidence 0013799999999999999999999999999999999999853211111111 1224444 357
Q ss_pred eEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC-C-----eEEEEe
Q 004961 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD-G-----CLEIID 580 (721)
Q Consensus 507 ~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d-G-----~l~i~G 580 (721)
.++|+|++++..+ ++|+.|||++++. +++.| +. +||+|||+++++++ | .++|.|
T Consensus 256 ~~eivd~~~g~~v---~~Ge~Gelvvt~~------------~~~~~---p~--~ry~TGDl~~~~~~~Gr~~~~~~~i~G 315 (422)
T TIGR02155 256 YPEIIDPHTGEVL---PDGEEGELVFTTL------------TKEAL---PV--IRYRTRDLTRLLPGTARTMRRMDRITG 315 (422)
T ss_pred EEEEECCCCCCCC---CCCCeeEEEEecC------------Ccccc---ce--eeEEcCcEEEEECCCCCcccccccccC
Confidence 7889996666654 5889999999863 34455 56 89999999999876 4 478999
Q ss_pred cCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHH
Q 004961 581 RKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEA 657 (721)
Q Consensus 581 R~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (721)
|.||+||++ |++|+|.+||++|.+||+|...+++..... +.+.+.|++.++.. .. ..++.
T Consensus 316 R~~d~i~~~-G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~--------~~--------~~~~~ 378 (422)
T TIGR02155 316 RSDDMLIIR-GVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY--------TL--------RLHEQ 378 (422)
T ss_pred ccCCeEEEC-CEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcc--------cc--------cchHH
Confidence 999999985 999999999999999999984333332222 35666666653220 00 01112
Q ss_pred HHHHHHHHHHHHHHCCCCCCccccEEEeeC--CCCCCCCCccCcccccChH
Q 004961 658 VNEVQQALSKVAKAAKLDKFEIPAKIKLMP--EPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 658 ~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~ 706 (721)
...+.++|++.++ +++..+. .|.++. ++ | +|+ ||++|.
T Consensus 379 ~~~~~~~i~~~~~-~~~~~~~---~v~~~~~~~l--p----~~~-GK~~~~ 418 (422)
T TIGR02155 379 ASLLAGEIQHTIK-QEVGVSM---DVHLVEPGSL--P----RSE-GKARRV 418 (422)
T ss_pred HHHHHHHHHHHHH-hccCcEE---EEEEECCCCc--c----CCC-CCceEE
Confidence 2344567777777 7776552 455553 55 5 888 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=300.90 Aligned_cols=515 Identities=17% Similarity=0.177 Sum_probs=322.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
+-++...|++.+...|++.+..+-...+ . .+.....||++....++.+++.|...|...|+.|++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~---------~------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i 99 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTAS---------E------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAI 99 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeeccc---------c------cccccchhhhhhhcccchhHHHhhhcccccCceEEE
Confidence 3578889999999999999988643210 0 123346899999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCC----HH---HHHHHHHhcCceEEEECccchhHHHhhhc-cCCCceEEEEe
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG----ED---ALIHSLNETQVTTLICDSKQLKKLSAVSS-SLKTIKNVIYF 232 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~----~~---~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~ii~~ 232 (721)
++..+.++++..++++++|..+++++|.++ ++ ++++.+......++ .. .+.+..... ..+.
T Consensus 100 ~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~--l~i~~~~~~~~~~~------- 168 (1032)
T KOG1178|consen 100 YMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RR--LNIIDILLNSLFPK------- 168 (1032)
T ss_pred eccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hh--hhhHHHHhhccccc-------
Confidence 999999999999999999999999999999 22 11111111111111 00 000000000 0000
Q ss_pred cCCCCCccCCccCCCCCceEeeH-HHHHhcCCCCC-CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh
Q 004961 233 ENDGSEKDSGVSGGISNWTVSSF-SEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (721)
..+... +.+........ .......+|..+++.||||+||.||+|.-+|..+.+...+....
T Consensus 169 -----------------~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~ 231 (1032)
T KOG1178|consen 169 -----------------LSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTT 231 (1032)
T ss_pred -----------------cchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhcccc
Confidence 001111 01111111111 11134456778999999999999999999999999999999888
Q ss_pred CCCCCCCcEEEeccCh-HHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ .++.++++-..... +++.-.......|+.|..+.+..+..- +. +..+...+++++++..+.+|++.++++..
T Consensus 232 f-~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~-~~----~~~l~~~le~y~i~~~~~~~a~~~~l~~~ 305 (1032)
T KOG1178|consen 232 F-PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIK-DT----PGQLASTLERYGITVSHLLPAMCQLLLAI 305 (1032)
T ss_pred C-CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCc-cc----hhhHHHHHHhhhheeeeechhhhhhhhhh
Confidence 8 77777765222222 222222234455666766655222111 10 12233338999999999999999988753
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHH-HHHHh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR-FINIC 468 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~-~~~~~ 468 (721)
....... + .+ ...+ .+.-. --+.|+...++|++....+.. .+..+
T Consensus 306 ~~~~~~~-------l-----~~-~~~~--------------------~dl~~-~~~~Lkl~~~~~ep~~v~l~~s~~~~~ 351 (1032)
T KOG1178|consen 306 LTTSLPL-------L-----EH-AFSL--------------------SDLLT-KRSCLKLVVLGGEPLLVSLYTSTFDLL 351 (1032)
T ss_pred cCcchhh-------h-----hh-hhhc--------------------ccccc-cchhheeeeecCCccchhhhhhhhhcc
Confidence 2211000 0 00 0000 00000 004789999999999999866 33333
Q ss_pred hCCceecccccchhcccccccCCCCCCC-------CccCCCcC----cceEEEEecCCCCcccC-CCCCCcceEEEcccc
Q 004961 469 MGAPIGQAYGLTETCAGSTFSEWDDPSV-------GRVGPPVP----CCYIKLVSWDEGGYKTS-DKPMPRGEIVVGGFN 536 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~-------~~vG~p~p----~~~v~i~d~~~~~~~~~-~~~g~~GEl~v~g~~ 536 (721)
.-.-...-|+.++.....+......... ..+.+-.. .+-+.+.. ..++.... ...+..|+.+..+..
T Consensus 352 ~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~ 430 (1032)
T KOG1178|consen 352 AEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSW 430 (1032)
T ss_pred cceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccce
Confidence 2222334488888777665544322211 11111111 11122221 11111110 000111122222333
Q ss_pred ccccccCCCccccccccc-CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEE
Q 004961 537 VTAGYFNNPGKTSEVYKV-DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615 (721)
Q Consensus 537 v~~gY~~~~~~t~~~f~~-~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~ 615 (721)
+..| ++.++.....+.. +...++.|+|||+|+..++|.+.|.||.|++||++ |.|+.++||+.++..||.|.++.+.
T Consensus 431 ~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r-G~Ri~L~ei~t~v~~~p~v~~~itl 508 (1032)
T KOG1178|consen 431 VVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR-GVRIELGELNTVVEVHPDVKEAITL 508 (1032)
T ss_pred eecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc-cEEEehhhhchhhccCcchhhhhee
Confidence 4444 2344433333221 11123799999999999999999999999999986 9999999999999999999999998
Q ss_pred ecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCC
Q 004961 616 ADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTP 692 (721)
Q Consensus 616 g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p 692 (721)
...+.. .++|||++.... + . .....|+.+++ +.|+.||+|..++.++.. |
T Consensus 509 ~~~~~~~~~~l~aFvv~~~~~----------~-~-------------~~~~~i~~~l~-~~La~y~vPs~~V~l~~v--P 561 (1032)
T KOG1178|consen 509 ARENSTVGQTLLAFVVERGGS----------K-S-------------VLIRDIRNYLK-KELASYMLPSLVVPLAKV--P 561 (1032)
T ss_pred eeeccccCceEEEEEeccCCC----------C-c-------------hhHHHHHHhhc-ccccceecceEEEEhhhC--C
Confidence 876543 599999987543 1 0 01578999999 999999999999999998 6
Q ss_pred CCCccCcccccChHHHHHHH
Q 004961 693 EAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 693 ~~~~~t~~gKi~R~~l~~~~ 712 (721)
+|++||||+++|.+.+
T Consensus 562 ----l~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 562 ----LNPNGKVDKKALLEYN 577 (1032)
T ss_pred ----cCCCCCcChhhhhhhh
Confidence 9999999999999833
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=263.84 Aligned_cols=526 Identities=14% Similarity=0.151 Sum_probs=342.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~Vai 160 (721)
.|+.++++.+++++||.+|+..- +++ ......+||++|..++.+++.+|.+. -+++||.|++
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L 832 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL 832 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence 68999999999999999999875 333 23446899999999999999999977 6899999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCH------HHHHHHHHhcCceEEEECccchhHHHhhh--ccC--CCceEEE
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGE------DALIHSLNETQVTTLICDSKQLKKLSAVS--SSL--KTIKNVI 230 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~--~~~~~ii 230 (721)
+.+++.|++++++||+.+|.+++|+.|.... ..+..+++..++..|+++......++.-. ... .....++
T Consensus 833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~ 912 (1363)
T KOG3628|consen 833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL 912 (1363)
T ss_pred EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence 9999999999999999999999999876433 47889999999999999987655443211 100 1111122
Q ss_pred EecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh
Q 004961 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (721)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (721)
.+++... .+ ........+ .....++...+++.+|++-|.--++|.--|+.+||.++++.+....+.
T Consensus 913 ~~~~~~~-----------t~-~k~~~~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~ 978 (1363)
T KOG3628|consen 913 VLPKLPE-----------TI-RKRKKNIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKET 978 (1363)
T ss_pred cccccch-----------hh-hhhhhhhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHH
Confidence 1111100 00 000111111 112223445577889999999999999999999999999999999998
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
. .+.++--++...+.+-..|+.. .+...+.|.+.++.+|..+... +..++..++++++.-++.+-..++.+.++
T Consensus 979 ~-~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn----psLll~~i~~~kvkDt~~~~~tln~c~~~ 1053 (1363)
T KOG3628|consen 979 C-QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN----PSLLLQIISQYKVKDTYPTYSTLNLCQKG 1053 (1363)
T ss_pred H-ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC----HHHHHHHHhcccccccchhHHHHHHHHhc
Confidence 8 7777767777777776677654 6677899999999888887777 55566669999998888888888877664
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
...+.+. +..+- .+.++ ..++..-+.....+.+-+.+.+
T Consensus 1054 l~t~~en---l~~~g-------------------------------------nn~s~-s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1054 LETSVEN---LSKRG-------------------------------------NNTSS-SIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred cccccch---hhhhh-------------------------------------ccccc-ceeeecCCccHHHHHHHHHHHH
Confidence 4332221 10000 00011 1122222222222222222221
Q ss_pred ---CC---ce-------------ecccccchhccccc--------------ccCCCCCCCCccCCCcCcceEEEEecCCC
Q 004961 470 ---GA---PI-------------GQAYGLTETCAGST--------------FSEWDDPSVGRVGPPVPCCYIKLVSWDEG 516 (721)
Q Consensus 470 ---g~---~l-------------~~~YG~TE~~~~~~--------------~~~~~~~~~~~vG~p~p~~~v~i~d~~~~ 516 (721)
|. .+ .++|-.-|-+..-. ...+........|...+++++.|++||+-
T Consensus 1093 a~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk 1172 (1363)
T KOG3628|consen 1093 AAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETK 1172 (1363)
T ss_pred HHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccc
Confidence 11 01 12222111110000 00000001123478889999999998876
Q ss_pred CcccCCCCCCcceEEEccccccccccCCCcc-ccccccc-----CCCCcceEeeCcEEEEc------cCC----eEEEEe
Q 004961 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK-TSEVYKV-----DERGMCWFYTGDIGQVY------PDG----CLEIID 580 (721)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~-t~~~f~~-----~~~g~gw~~TGDlg~~d------~dG----~l~i~G 580 (721)
+. |..|+.||||+.|..-+.+|++--+. ....|.. +-++.+|-||||+|++. .+| -||++|
T Consensus 1173 ~p---c~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG 1249 (1363)
T KOG3628|consen 1173 GP---CRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLG 1249 (1363)
T ss_pred cc---cccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEee
Confidence 65 55889999999999999888865211 1111211 12256899999999983 222 599999
Q ss_pred cCCCeEEcCCeeeecchHHHHHHhc-CcccceEEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHH
Q 004961 581 RKKDIVKLQHGEYISLGKVEAALIS-SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVN 659 (721)
Q Consensus 581 R~~d~ik~~~G~~v~~~eIE~~l~~-~p~V~~~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (721)
-.++.+.++ |.+.+|.+||..+.. ||.|.+|+|+... ..+|.++....+. ++.+
T Consensus 1250 ~i~EtlEl~-GL~h~p~DIE~TV~~vH~~I~~cavF~~~--glvVvviE~~gq~----------------------~~~~ 1304 (1363)
T KOG3628|consen 1250 AIDETLELN-GLRHFPSDIETTVERVHPSIGGCAVFQAT--GLVVVVIECHGQQ----------------------ELAD 1304 (1363)
T ss_pred cccceeeec-CcccCcchHHHHHHHhcccccceeeEeeC--CeEEEEEEecCch----------------------hHhh
Confidence 999999995 999999999998865 9999999999864 3455555544321 0111
Q ss_pred HHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH-HHHHHhhh
Q 004961 660 EVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF-KDDLQMLY 720 (721)
Q Consensus 660 ~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~-~~~i~~~Y 720 (721)
.+---+...+. .++-+..-+.|++.--.| +++.|--+|..+++.+ .++|+-+|
T Consensus 1305 LvPlIv~~vL~----eH~iI~dvV~fV~~G~~p----~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1305 LVPLIVNVVLE----EHYIILDVVAFVDKGVFP----RNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred hhHHHHHHHHh----hcceEEEEEEEecCCccc----cCCchhhHHHHHHHHHHhcccceee
Confidence 11111222222 233355566677753224 9999999999998775 45555443
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=246.22 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=183.0
Q ss_pred CCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC--CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc
Q 004961 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS 349 (721)
Q Consensus 273 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~ 349 (721)
..++++.+.|||||||.||+|.+||+++..........+ .++.++|+++...|+.+..+... .+.++..|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 457889999999999999999999999887665443321 27889999999999887666544 345577888775432
Q ss_pred c-ccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchh
Q 004961 350 T-LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428 (721)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (721)
. .... ..++++++|.+.++|+.+..+.+...... +.
T Consensus 164 ~~~~~~-----------~~i~~~~~t~l~~~ps~ll~La~~~~~~g-------------------------------~~- 200 (445)
T TIGR03335 164 KCTFPI-----------RIIESYRPTGIVASVFKLLRLARRMKAEG-------------------------------ID- 200 (445)
T ss_pred chhHHH-----------HHHHHhCCCEEEECHHHHHHHHHHHHHcC-------------------------------CC-
Confidence 2 1112 23889999999999998877765322100 00
Q ss_pred hhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCc--Ccc
Q 004961 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--PCC 506 (721)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--p~~ 506 (721)
....++|.+++||+++++++.+.+.+.+|+++++.||+||++....+ . ...|..+ +.+
T Consensus 201 -------------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c-~------~~~g~h~~~d~~ 260 (445)
T TIGR03335 201 -------------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGEC-Q------AVAGLHVPEDLV 260 (445)
T ss_pred -------------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEe-c------CCCCccccCCce
Confidence 00137999999999999999999999899999999999998632211 1 1224444 457
Q ss_pred eEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc-C----C----eEE
Q 004961 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP-D----G----CLE 577 (721)
Q Consensus 507 ~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~-d----G----~l~ 577 (721)
.+.|+|++++.. +++|+.|||++.+-.-. .+.+.+ += --|+|||++++.. + | .+.
T Consensus 261 ~vEIvDp~~~~~---vp~Ge~GELvvT~L~~~--------~~r~~~---Pl--iRYrtgD~~~~~~~~~C~CGr~~~r~~ 324 (445)
T TIGR03335 261 HLDVYDPRHQRF---LPDGECGRIVLTTLLKP--------GERCGS---LL--INYDTEDTTVVISRDRCPCGRTHMRIL 324 (445)
T ss_pred EEEEEcCCCCCC---CcCCCceEEEEEecCCC--------CccCCc---eE--EEeecCceEEEecCCCCCCCCCcceeC
Confidence 899999554443 35899999999765310 001111 11 2489999999732 2 2 255
Q ss_pred EEecCCCeEEcCCeeeecchHHHHHHhcC---cccc
Q 004961 578 IIDRKKDIVKLQHGEYISLGKVEAALISS---DYVD 610 (721)
Q Consensus 578 i~GR~~d~ik~~~G~~v~~~eIE~~l~~~---p~V~ 610 (721)
..||.||+++++ |.+|+|.+||++|.++ +++.
T Consensus 325 ~~gR~dd~~~~~-g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 325 NPEREAETIWIS-GVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred CCcccCceEEEC-CEEeCHHHHHHHHhccCCCCCCC
Confidence 579999999996 9999999999999995 5553
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=214.30 Aligned_cols=221 Identities=13% Similarity=0.074 Sum_probs=157.8
Q ss_pred HHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcH
Q 004961 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCV 166 (721)
Q Consensus 88 ~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~ 166 (721)
+...++++|+++|+++.+ |+. ++.+.+||+|+.++++++|+.|++ .|+++||||+|+++|++
T Consensus 2 ~~~~~~~~p~~~al~~~~----------~~~-------~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~ 64 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYD----------DAT-------GERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW 64 (227)
T ss_pred hhhhhhhCCCCcEEEEEc----------CCC-------CeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 467788999999998631 110 112469999999999999999998 79999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCC
Q 004961 167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246 (721)
Q Consensus 167 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 246 (721)
+++++++||+++|++++|+| ++++++++++++..+.+. .+ +.++.+.......... ...
T Consensus 65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~-~~~ 123 (227)
T TIGR03089 65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVA-GEL 123 (227)
T ss_pred HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCC-CCC
Confidence 99999999999999999995 789999999988766543 11 2233321100000000 000
Q ss_pred CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccCh
Q 004961 247 ISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326 (721)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl 326 (721)
. ....+|.+..........+.....++|+++|+||||+ +|++++... ... +++++|+++ .+|+
T Consensus 124 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl 186 (227)
T TIGR03089 124 P--PGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAW 186 (227)
T ss_pred C--CcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCC
Confidence 1 1123555544422222111114467999999999985 677766654 344 889999999 9999
Q ss_pred HHHHHHHH-HHHHHHhcceEee---CccccccccchhhccCccccceeecce
Q 004961 327 AHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPT 374 (721)
Q Consensus 327 ~h~~g~~~-~~~~l~~G~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t 374 (721)
+|++|+.. ++.+|..|+++++ +++..+++. |+++|||
T Consensus 187 ~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT 227 (227)
T TIGR03089 187 TDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT 227 (227)
T ss_pred CchHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence 99999865 7788999999998 555555555 8888876
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=195.95 Aligned_cols=281 Identities=20% Similarity=0.181 Sum_probs=199.6
Q ss_pred CCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC--CCCCCCcEEEeccChH-HHHHHHHHHHHHHhcceEeeC
Q 004961 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLA-HVLELAAESIMLCAGCAIGYG 348 (721)
Q Consensus 272 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~-h~~g~~~~~~~l~~G~~~~~~ 348 (721)
...++...|--||||||+|+-+.+++..+......+.+.+ .+...+|++..+.-+. +..|+..-..+--.|++++=.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 3456667788899999999999999999887777666654 3677888876554411 111222223333456665543
Q ss_pred ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchh
Q 004961 349 STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428 (721)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (721)
++.... .....+..+++|++.++|+.+..|.+........ .
T Consensus 167 ~~g~~~--------~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~--~----------------------------- 207 (438)
T COG1541 167 SGGNTE--------RQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID--P----------------------------- 207 (438)
T ss_pred CCccHH--------HHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC--h-----------------------------
Confidence 332211 1223389999999999999999998865443100 0
Q ss_pred hhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCc--Ccc
Q 004961 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--PCC 506 (721)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--p~~ 506 (721)
.-.+++.+++|+|+++++..+.+.+.+|+..++.||+||..+.. ...... .. |..+ ...
T Consensus 208 --------------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g-~~eC~~---~~-glhi~eD~~ 268 (438)
T COG1541 208 --------------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPG-AGECTE---RN-GLHIWEDHF 268 (438)
T ss_pred --------------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCc-cccccc---cc-CCCcchhhc
Confidence 00389999999999999999999999999999999999997663 111111 11 3333 567
Q ss_pred eEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC----C-----eEE
Q 004961 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----G-----CLE 577 (721)
Q Consensus 507 ~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G-----~l~ 577 (721)
.+.|+||+++.+++ .|+.|||++..-. ++.+ += --|+|||++.+.++ | -..
T Consensus 269 ~~Ei~dP~t~e~l~---dge~GelV~T~L~------------~~~~---Pl--IRYrtgDit~i~~~~C~cGr~~~ri~~ 328 (438)
T COG1541 269 IFEIVDPETGEQLP---DGERGELVITTLT------------KEGM---PL--IRYRTGDITVILSDPCGCGRTHRRIER 328 (438)
T ss_pred eeeeecCCcCccCC---CCCeeEEEEEecc------------ccCc---ce--EEEEcCCeeEecccCCCCCCccccccc
Confidence 88999988888765 7899999986432 2222 22 35999999999763 3 257
Q ss_pred EEecCCCeEEcCCeeeecchHHHHHHhcCcccc---eEEEEecCCCceEEEEEEcCh
Q 004961 578 IIDRKKDIVKLQHGEYISLGKVEAALISSDYVD---NIMIHADPFHNYCVALVVPSH 631 (721)
Q Consensus 578 i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~---~~~V~g~~~~~~~~A~vv~~~ 631 (721)
|.||.||+++++ |.+|+|..||++|.+.+.+. ++.+........+..-|...+
T Consensus 329 I~GR~dD~l~~~-G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~ 384 (438)
T COG1541 329 IEGRSDDMLIVR-GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN 384 (438)
T ss_pred cCcccccEEEEC-CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence 999999999997 99999999999999999999 677766333345666666654
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=193.85 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=100.2
Q ss_pred ceEeeCcEEEE-ccCCeEEEEecCCCeEEcCCe---eeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChH
Q 004961 560 CWFYTGDIGQV-YPDGCLEIIDRKKDIVKLQHG---EYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHK 632 (721)
Q Consensus 560 gw~~TGDlg~~-d~dG~l~i~GR~~d~ik~~~G---~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~ 632 (721)
|||+|||+|++ |+||+|+|+||.| +| +||+|. ||++|.+||+|.+|+|+|.+++. .++|+|++...
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~ 281 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELP 281 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC
Confidence 99999999998 7999999999997 58 899999 99999999999999999998764 59999987531
Q ss_pred HHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
. + .++|+++|+ ++|++ ++|+.|.+++++ | +|++||++|++|++..
T Consensus 282 ~----------~-----------------~~el~~~l~-~~L~~-kvP~~v~~v~~l--P----~t~~GKi~R~~Lr~~~ 326 (365)
T PRK09188 282 A----------D-----------------EKSLRARLA-GAKPP-KPPEHIQPVAAL--P----RDADGTVRDDILRLIA 326 (365)
T ss_pred C----------C-----------------HHHHHHHHH-hhchh-cCCcEEEEECCC--C----CCCCCCccHHHHHHHh
Confidence 1 0 268999998 89999 999999999998 6 9999999999999876
Q ss_pred HHH
Q 004961 713 KDD 715 (721)
Q Consensus 713 ~~~ 715 (721)
.+.
T Consensus 327 ~~~ 329 (365)
T PRK09188 327 MNQ 329 (365)
T ss_pred hcc
Confidence 443
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=180.34 Aligned_cols=519 Identities=16% Similarity=0.148 Sum_probs=323.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHH-HHHhCCCCCCCE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFAS-GLVNFGHNVDTR 157 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~-~L~~~Gv~~gd~ 157 (721)
.....+..+++..-.+++...|.++- |.+ |....+||..+..++.++|+ .|.+.|+.++|+
T Consensus 91 ~a~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~ 152 (1363)
T KOG3628|consen 91 MALTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDR 152 (1363)
T ss_pred hhhcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcE
Confidence 34566778888888888999998875 333 33568999999999999999 777789999999
Q ss_pred EEEEcCCc--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCC
Q 004961 158 AAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 158 Vai~~~n~--~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|.++...+ .|+++..++|..+|.+++|+++..+.+++..+++....+++++.......+........-.+.+-.....
T Consensus 153 vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~ 232 (1363)
T KOG3628|consen 153 VVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTN 232 (1363)
T ss_pred EEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcc
Confidence 99999886 8999999999999999999999999999999999999999999887665554432110000000000000
Q ss_pred CCCccCCccCCCCCce-EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC---
Q 004961 236 GSEKDSGVSGGISNWT-VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--- 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--- 311 (721)
..+ .+.++. ...+..+-. ..+|-||++++|.--|++++|+ ++.+.+.+....
T Consensus 233 -------------~~k~~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~ 288 (1363)
T KOG3628|consen 233 -------------DFKGNYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTN 288 (1363)
T ss_pred -------------cccceeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcC
Confidence 000 111111 001112222 7999999999999999999998 554443322211
Q ss_pred ----------------CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecce
Q 004961 312 ----------------PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374 (721)
Q Consensus 312 ----------------~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t 374 (721)
.+....+.++..+......|++. ++.++++|.|....+...+... -.+...+.+++.+
T Consensus 289 Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~p-----G~~~~l~~k~R~~ 363 (1363)
T KOG3628|consen 289 PARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPP-----GLIANLITKYRAT 363 (1363)
T ss_pred hHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCC-----cchhhhhccceeE
Confidence 13455677777777777777765 7888999998877443322222 2233337888888
Q ss_pred EEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecC
Q 004961 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454 (721)
Q Consensus 375 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 454 (721)
++..--..+.+....... +-...+.|.+-+..+.+++|.+++.-
T Consensus 364 ~~ltd~~~Lkq~~~ny~~------------------------------------~p~a~~s~~k~~t~d~sslk~C~Vtc 407 (1363)
T KOG3628|consen 364 WSLTDYAGLKQPVYNYQE------------------------------------DPKATLSFKKYKTPDLSSLKGCMVTC 407 (1363)
T ss_pred EEeecccccCcccccccC------------------------------------CcccccchhhccCCCccceeeeEEee
Confidence 877644433332221110 00111224455556678999999999
Q ss_pred CCCCHHHHHHHHHhh----CCc-e-----------------ecccccchhcccccccCCCCC------------------
Q 004961 455 APLSADSQRFINICM----GAP-I-----------------GQAYGLTETCAGSTFSEWDDP------------------ 494 (721)
Q Consensus 455 ~~l~~~~~~~~~~~~----g~~-l-----------------~~~YG~TE~~~~~~~~~~~~~------------------ 494 (721)
..+..+..+....++ |.. + +..-+++|.+...-..+....
T Consensus 408 ~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~ 487 (1363)
T KOG3628|consen 408 TAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNE 487 (1363)
T ss_pred eecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccce
Confidence 999988665444432 211 1 112223444433322221000
Q ss_pred ------------CCCccCCCcCc-ceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccC------
Q 004961 495 ------------SVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD------ 555 (721)
Q Consensus 495 ------------~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~------ 555 (721)
....+|...|+ +.+.+++++.... |.++++|||||.++++..+||.-+..|...|...
T Consensus 488 V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~L---C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~ 564 (1363)
T KOG3628|consen 488 VEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQL---CKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSG 564 (1363)
T ss_pred EEEcchhhhhhcCccccceecccceEEEEeCCCcccc---cccCcceeEEEecCCcccceeeccccccceEEeeeccccC
Confidence 01234555555 5667777555544 6688999999999999999999888887777541
Q ss_pred --CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchH----------HHHHHhcCcccceEEEEecCCCceE
Q 004961 556 --ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK----------VEAALISSDYVDNIMIHADPFHNYC 623 (721)
Q Consensus 556 --~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~e----------IE~~l~~~p~V~~~~V~g~~~~~~~ 623 (721)
+....+.|||-+|+++ .|.++|+|-++|++.--.|.+++..+ |+.+++..+.|-++.|+- +++.
T Consensus 565 ~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~ 640 (1363)
T KOG3628|consen 565 KPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHI 640 (1363)
T ss_pred CCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceE
Confidence 1123689999999998 55566666655555332366665544 445556677888888887 3344
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+.+++-++...+. +.-+...++.+.+...- ++- +=.+.+++..-.| +|+-|-|
T Consensus 641 ~Vv~~esP~a~e~----------------~~~q~~~~v~q~l~~iH---qv~----vyCilivP~~tLP----rt~~~Gi 693 (1363)
T KOG3628|consen 641 VVVVLESPDATEE----------------NSFQWMSRVFQALDSIH---QVG----VYCILIVPANTLP----RTPLGGI 693 (1363)
T ss_pred EEEEEeCcchhhh----------------hhhhHHHHHHHHHHHHh---ccc----ceEEEEeccccCC----Ccccccc
Confidence 4444444433211 01122233334444332 232 2234455542224 8888888
Q ss_pred ChHHHHHHHHH
Q 004961 704 KREQLKAKFKD 714 (721)
Q Consensus 704 ~R~~l~~~~~~ 714 (721)
.-...++.|.+
T Consensus 694 ~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 694 HNNECKQAFLE 704 (1363)
T ss_pred ccHHHHHHHHc
Confidence 88888887753
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-13 Score=142.60 Aligned_cols=259 Identities=12% Similarity=0.097 Sum_probs=153.5
Q ss_pred EEEEeecCCCCCcceeeeccHHHHHHHHHHHhh-C-CCCCCCcEEEecc--ChHHHHHHHHHHHHHHhcc-eEeeCcccc
Q 004961 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-I-PNPGRSDVYLAYL--PLAHVLELAAESIMLCAGC-AIGYGSTLT 352 (721)
Q Consensus 278 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~-~~~~~~d~~l~~~--pl~h~~g~~~~~~~l~~G~-~~~~~~~~~ 352 (721)
..+..||||||.|-.+..+.............. . .++..++++...+ +. +.+ ..+.... .+-+++..
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l~- 173 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDLL- 173 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCCC-
Confidence 456779999999999999998765443333222 2 2445555555442 11 111 1111111 12222221
Q ss_pred ccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHH
Q 004961 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (721)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (721)
+. .......|.+++||++.+.|+.+..|.+...... +
T Consensus 174 --~~----~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~-----l-------------------------------- 210 (430)
T TIGR02304 174 --AP----FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGE-----L-------------------------------- 210 (430)
T ss_pred --cC----HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC-----C--------------------------------
Confidence 11 1122334899999999999999999987533210 0
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEe
Q 004961 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (721)
Q Consensus 433 ~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d 512 (721)
..+++.++++||+++++..+.+++.||+++++.||+|| +.+++...... -.+=...--+|..++|
T Consensus 211 -----------~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD 275 (430)
T TIGR02304 211 -----------TIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLD 275 (430)
T ss_pred -----------CCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEEC
Confidence 02689999999999999999999999999999999999 44332221110 0111111112333666
Q ss_pred cCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC----C----eE-EEEecCC
Q 004961 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----G----CL-EIIDRKK 583 (721)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G----~l-~i~GR~~ 583 (721)
+++ .++. |..++.| .++ += --|+|||++.+.++ | .| .|.||.+
T Consensus 276 -~~~----------~~~~------ViT~L~n------~~~---Pl--IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~d 327 (430)
T TIGR02304 276 -EHK----------RFVP------IITDFTR------TTQ---PI--VRYRLNDILVESEQPCSCGSATMAIERIEGRQD 327 (430)
T ss_pred -CCC----------ceEE------EEecCCC------ccc---eE--EeeeCCCEEEeCCCCCCCCCcccccCCccCccC
Confidence 222 1232 3333322 111 11 24899999998544 3 24 4899999
Q ss_pred CeEEc--CCeee--ecchHHHHHHh-cCcccceEEEEecCCCceEEEEEEcCh
Q 004961 584 DIVKL--QHGEY--ISLGKVEAALI-SSDYVDNIMIHADPFHNYCVALVVPSH 631 (721)
Q Consensus 584 d~ik~--~~G~~--v~~~eIE~~l~-~~p~V~~~~V~g~~~~~~~~A~vv~~~ 631 (721)
|++++ .+|.. |+|..++.++. ..++|.+.-++... ...+...+++.+
T Consensus 328 D~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~ 379 (430)
T TIGR02304 328 DIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL 379 (430)
T ss_pred CEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence 99985 34555 48999998854 57899888777644 334444445443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-10 Score=89.04 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=54.5
Q ss_pred HHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCC
Q 004961 598 KVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674 (721)
Q Consensus 598 eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L 674 (721)
|||++|.+||+|.+|+|++.+++ ..++|+|++ . .++|+++++ .+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~-----------------------------~~~i~~~~~-~~l 48 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D-----------------------------EEEIRDHLR-DKL 48 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H-----------------------------HHHHHHHHH-HHS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e-----------------------------ecccccchh-hhC
Confidence 79999999999999999999866 469999998 2 168888998 789
Q ss_pred CCCccc--cEEEeeCC-CCCCCCCccCcccc
Q 004961 675 DKFEIP--AKIKLMPE-PWTPEAGLVTAALK 702 (721)
Q Consensus 675 ~~~~~P--~~i~~~~~-~~~p~~~~~t~~gK 702 (721)
|+|++| ..++.+++ + | +|++||
T Consensus 49 ~~~~~P~~~~~v~~~~~l--P----~t~~GK 73 (73)
T PF13193_consen 49 PPYMVPRRIRFVRLDEEL--P----RTPSGK 73 (73)
T ss_dssp -GGGS-SEEEEEEESSSE--E----BETTSS
T ss_pred CCcceeeEEEEccccCcC--C----CCCCCC
Confidence 999999 45555566 5 6 999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=91.40 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=130.4
Q ss_pred CCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC---CCCCC-CcEEEeccChHHH---HHH--HHHHHHHHhcce
Q 004961 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGR-SDVYLAYLPLAHV---LEL--AAESIMLCAGCA 344 (721)
Q Consensus 274 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~-~d~~l~~~pl~h~---~g~--~~~~~~l~~G~~ 344 (721)
++++..++-||||||.|--+.+.+..+......+...+ ..... .-.++...|-... ++. ......+..+..
T Consensus 88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
T PF04443_consen 88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR 167 (365)
T ss_pred hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence 45667788899999998656666666665554443332 12221 1233333342211 111 111222333444
Q ss_pred EeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccC
Q 004961 345 IGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424 (721)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (721)
..+ +...+ +... ....+.....+.++..+++.|.++-.+...+.+.... +
T Consensus 168 ~~l-~~~~l-d~~~-~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~-------------------~-------- 217 (365)
T PF04443_consen 168 FAL-DNDEL-DLEG-LIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR-------------------F-------- 217 (365)
T ss_pred eee-cCCcc-CHHH-HHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc-------------------c--------
Confidence 222 11111 1100 0111111134567888999888776665532221100 0
Q ss_pred CchhhhHHHHHHHHHHHHhCCcEEEEEecC------CCCCH-HHHHHHHHhhCC----ceecccccchhcccccccCCCC
Q 004961 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGG------APLSA-DSQRFINICMGA----PIGQAYGLTETCAGSTFSEWDD 493 (721)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG------~~l~~-~~~~~~~~~~g~----~l~~~YG~TE~~~~~~~~~~~~ 493 (721)
.+.+..+.+-.|| +.++. +..+.+++.+|+ .+++.||+||.....+-....
T Consensus 218 -----------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~- 279 (365)
T PF04443_consen 218 -----------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG- 279 (365)
T ss_pred -----------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC-
Confidence 0012345555555 45765 457788888897 699999999976543322111
Q ss_pred CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC
Q 004961 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD 573 (721)
Q Consensus 494 ~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d 573 (721)
. .++|.- |.|.|+++... ++.|+.|-|.+-.+... . .. +..-|.|+|.+..+
T Consensus 280 ----~--~~~p~w-V~iRDp~tl~~---~~~Ge~Gli~vidl~~~-s---------------~p--~~IlTeDlGvl~~~ 331 (365)
T PF04443_consen 280 ----H--FHVPPW-VIIRDPETLEP---LPPGETGLIQVIDLANT-S---------------YP--GFILTEDLGVLHGD 331 (365)
T ss_pred ----c--ccCCCe-EEEECCCCCcC---CCCCCeeEEEEEccccc-C---------------CC--cEEEEcceeeecCC
Confidence 1 123333 77888666443 56889999988766432 1 12 45789999988654
Q ss_pred --------CeEEEEecCCCeEEcCCeeee
Q 004961 574 --------GCLEIIDRKKDIVKLQHGEYI 594 (721)
Q Consensus 574 --------G~l~i~GR~~d~ik~~~G~~v 594 (721)
.++.++||.+.-=. | |-..
T Consensus 332 ~~c~cr~g~~f~vlGR~~~ae~-R-GCs~ 358 (365)
T PF04443_consen 332 DDCGCRKGKYFEVLGRADGAEI-R-GCSL 358 (365)
T ss_pred CCCCCccCCEEEEEeCCCCCcc-C-CcHH
Confidence 27999999886542 4 5443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-06 Score=90.77 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=86.4
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhhC-C-ceecccccchhcccccccCCCCCCCCccCCCcCcc-eEEEEecCCCC--
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICMG-A-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVSWDEGG-- 517 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~g-~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~-~v~i~d~~~~~-- 517 (721)
+.++|+.|.+-+..-...-.+.++..+| + .+..+|++||+...+... + .. ..+.+.|+. -...++.++..
T Consensus 265 lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~--~~--~~~~l~~~~~ffEFip~~~~~~~ 339 (528)
T PF03321_consen 265 LWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P--ED--PGYVLAPDSGFFEFIPVDEDEQN 339 (528)
T ss_dssp HSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C--CC----EEE-TTSSEEEEEE-STT---
T ss_pred hCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C--CC--CceEeecCCeEEEEEeccCCccc
Confidence 3478985555333333344555555554 3 355789999974433222 1 11 112222322 34445533321
Q ss_pred ------cc--cCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc--CC--eEEEEecCCCe
Q 004961 518 ------YK--TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP--DG--CLEIIDRKKDI 585 (721)
Q Consensus 518 ------~~--~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~--dG--~l~i~GR~~d~ 585 (721)
.+ ..+..|+.-||+|...+ |.| -|+.||++++.. ++ .|.|+||.+.+
T Consensus 340 ~~~~~~~l~~~ele~G~~YelviTt~~---GLy------------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~ 398 (528)
T PF03321_consen 340 PSEQPKTLLLHELEVGEEYELVITTNS---GLY------------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQV 398 (528)
T ss_dssp ----SSSEEGGG--TT-EEEEEEESTT---S-S------------------SEEECEEEEEEEEETTEEEEEEEEETTEE
T ss_pred ccCCCceecHHHhcCCCeEEEEEeccc---cee------------------eeecCCEEEEeeccCCCcEEEEeccCCce
Confidence 11 12455666677775432 332 389999999852 45 79999999999
Q ss_pred EEcCCeeeecchHHHHHHhcC-----cccceEEEEecC---CCceEEEEEEcChH
Q 004961 586 VKLQHGEYISLGKVEAALISS-----DYVDNIMIHADP---FHNYCVALVVPSHK 632 (721)
Q Consensus 586 ik~~~G~~v~~~eIE~~l~~~-----p~V~~~~V~g~~---~~~~~~A~vv~~~~ 632 (721)
+.+. ||+++-.+|++++.+. -.+.+-++..+. ....-+.++.+...
T Consensus 399 l~l~-gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 399 LSLF-GEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp E-SS-S--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred eecc-eeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 9995 9999999999999764 335566666652 34455566655543
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00073 Score=75.55 Aligned_cols=137 Identities=15% Similarity=0.258 Sum_probs=80.0
Q ss_pred HhCCc---EEEEEecCCCCCHHHHHHHHHhh-CC-ceecccccchhcccccccCCCCCCCCccCCC-cC-cceEEEEecC
Q 004961 442 VLGGR---IRFMICGGAPLSADSQRFINICM-GA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VP-CCYIKLVSWD 514 (721)
Q Consensus 442 ~~~~~---lr~v~~gG~~l~~~~~~~~~~~~-g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~p-~~~v~i~d~~ 514 (721)
.+.++ +..+..||.. .-...++..+ +. .+..+|++||+...+-..+. ..+..++.. +| +.-...++.+
T Consensus 299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~--~~p~~~~~~l~~~~~ffEFiP~~ 373 (597)
T PLN02249 299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPM--CKPSEVSYTIMPNMAYFEFLPHN 373 (597)
T ss_pred HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCC--CCCCCcceEecCCcEEEEeeecc
Confidence 34577 6777777765 3345555544 33 46689999997543322111 111112221 12 3334444322
Q ss_pred CCC--------c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC----CeEEEEe
Q 004961 515 EGG--------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GCLEIID 580 (721)
Q Consensus 515 ~~~--------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G~l~i~G 580 (721)
+.+ . +..+..|+.-||+|... .|-| -|+.||+.++..- =.|.|+|
T Consensus 374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLy------------------RY~iGDvVrvtgf~~~~P~i~F~g 432 (597)
T PLN02249 374 HDGDGALDETSLVELADVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFKFIR 432 (597)
T ss_pred cCCcccCCCCcEecHHHcCCCCeEEEEEEcc---ccee------------------EeecCCEEEEeeccCCCcEEEEEc
Confidence 111 0 01134455556666432 1222 3889999999532 3699999
Q ss_pred cCCCeEEcCCeeeecchHHHHHHhc
Q 004961 581 RKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 581 R~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
|.+.++.+ .||++.-.+++.++.+
T Consensus 433 R~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 433 RKNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred cCCcceec-ccccCCHHHHHHHHHH
Confidence 99999998 5999999999998876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0031 Score=70.00 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=82.3
Q ss_pred HHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcee-cccccchhcccccccCCCCCCCCccCCCcCcce-EEEEecCCCC
Q 004961 441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY-IKLVSWDEGG 517 (721)
Q Consensus 441 ~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~-v~i~d~~~~~ 517 (721)
..+.+++++|.+--..-...-...++... |++++ -+||+||+...+-..+..++. ......+|+.. ...++.+++.
T Consensus 289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~-~~sy~L~p~~~yFEFip~~~~~ 367 (606)
T PLN02247 289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS-DVSYTLLPNMAYFEFLPVDKNN 367 (606)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc-CCceeecCCcEEEEEeecCCCc
Confidence 45668888887743333444455555444 56655 589999976554433221111 12223334432 3344433321
Q ss_pred cc--------------------------cCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEc
Q 004961 518 YK--------------------------TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571 (721)
Q Consensus 518 ~~--------------------------~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d 571 (721)
.. ..+..|+.-||+|..- .|. =-|+.||+.+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GL------------------YRYrlGDvv~V~ 426 (606)
T PLN02247 368 GEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGL------------------YRYRVGDILMVT 426 (606)
T ss_pred ccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---Cce------------------EEEecCCEEEEe
Confidence 10 0133444455555321 121 137899998873
Q ss_pred ----cCCeEEEEecCCCeEEcCCeeeecchHHHHHHhc
Q 004961 572 ----PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 572 ----~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
..=.|.|++|.+.+..+ .|++.+-.++-.++.+
T Consensus 427 GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 427 GFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ 463 (606)
T ss_pred eecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence 33579999999999998 5999999999888865
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.012 Score=65.37 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=80.9
Q ss_pred HHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCcee-cccccchhcccccccCCCCCCCCcc-CCCcCcce-EEEEecCCC
Q 004961 441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRV-GPPVPCCY-IKLVSWDEG 516 (721)
Q Consensus 441 ~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~v-G~p~p~~~-v~i~d~~~~ 516 (721)
..+.+++++|.+-...-...-...++... |++++ -+|++||+...+-..+. ..+..+ +..+|+.. ...++.+++
T Consensus 300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~--~~p~~~sy~L~p~~~yFEFip~~~~ 377 (612)
T PLN02620 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLIPTMAYFEFLPVHRN 377 (612)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC--CCcccceeeecCCcEEEEEeeccCc
Confidence 45668888776644333444445554433 56654 68999997654433332 122222 22334432 233432211
Q ss_pred -C------------------c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEc----
Q 004961 517 -G------------------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY---- 571 (721)
Q Consensus 517 -~------------------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d---- 571 (721)
+ . ...+..|+.-||+|... .|.| -|+.||+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLy------------------RYrlGDvv~V~Gf~n 436 (612)
T PLN02620 378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLY------------------RYRVGDVLRVAGFKN 436 (612)
T ss_pred ccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceE------------------EEecCCEEEEeeecC
Confidence 0 0 00133445555655422 1211 38899998884
Q ss_pred cCCeEEEEecCCCeEEcCCeeeecchHHHHHHhc
Q 004961 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 572 ~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
..=.|.|++|.+-+..+ .|++.+-.++-.++.+
T Consensus 437 ~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 437 KAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred CCceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 33479999999999998 5999999998887755
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=47.43 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=48.2
Q ss_pred eeeecchHHHHHHhcCcccc-e--EEEEecCCCceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHH
Q 004961 591 GEYISLGKVEAALISSDYVD-N--IMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667 (721)
Q Consensus 591 G~~v~~~eIE~~l~~~p~V~-~--~~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 667 (721)
|.||+|..||++|.++|++. + ++|.-..+...+...|...++.. .+....+++.+.+.+.|++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~--------------~~~~~~~~l~~~i~~~lk~ 66 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS--------------DDAEDLEALAERIAERLKE 66 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC--------------TTHHHHHHHHHHHHHHHHH
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC--------------cchHHHHHHHHHHHHHHHh
Confidence 78999999999999999998 3 33333333345666676665320 0011133455566666666
Q ss_pred HHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 668 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 668 ~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
.+. +-..|.+++.--.| +| .||.+|
T Consensus 67 ~lg--------v~~~V~lv~~gtLp----r~-~~K~~R 91 (96)
T PF14535_consen 67 RLG--------VRPEVELVPPGTLP----RS-EGKAKR 91 (96)
T ss_dssp HHS--------S-EEEEEE-TT-S--------SSSS-S
T ss_pred hcC--------ceEEEEEECCCCcc----CC-CCcceE
Confidence 553 22377777642114 66 678776
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.2 Score=53.40 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=76.1
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
.-+|+.++...+..+|+.|...|..+||+|.++..-+. .-+-..+|+.++|++++|+.+ -.-++...++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcEE
Confidence 46899999999999999999999999999988877221 116788999999999999988 345677789999999999
Q ss_pred EECccchhHHHhhh
Q 004961 207 ICDSKQLKKLSAVS 220 (721)
Q Consensus 207 i~~~~~~~~~~~~~ 220 (721)
.+.+...-.+.+..
T Consensus 187 ~~tps~~l~lae~~ 200 (438)
T COG1541 187 AATPSYLLYLAEEA 200 (438)
T ss_pred EEChHHHHHHHHHH
Confidence 99998876665544
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.38 E-value=5.9 Score=43.19 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=68.2
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (721)
.+|..++......++..+...|+++||++........ ......+++...|+.++++.... .+.+...|++.++++++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 5688888777777888888889999999887665432 22334677889999999987654 57788999999999999
Q ss_pred ECccchhHHHh
Q 004961 208 CDSKQLKKLSA 218 (721)
Q Consensus 208 ~~~~~~~~~~~ 218 (721)
+.+.....+.+
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 99887655543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.26 E-value=6.6 Score=43.21 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=65.4
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|..++...+..++..+...|+.+||++.++.+.+.. .....+++..+|+.++|... .+....++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 458999999998889999888999999999998876542 23456788999998887643 2345678899999999
Q ss_pred EECccchhH
Q 004961 207 ICDSKQLKK 215 (721)
Q Consensus 207 i~~~~~~~~ 215 (721)
++.......
T Consensus 181 ~~~ps~ll~ 189 (445)
T TIGR03335 181 VASVFKLLR 189 (445)
T ss_pred EECHHHHHH
Confidence 887765433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 721 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-18 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-14 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 6e-14 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-13 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-13 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-13 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-13 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-12 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 5e-12 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 7e-12 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-11 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-11 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-11 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 5e-11 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 9e-11 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 9e-11 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 9e-11 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 1e-10 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-09 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-08 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 2e-07 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-07 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 5e-07 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 5e-07 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 1e-06 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 1e-06 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-06 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 2e-05 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 6e-05 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-04 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 1e-04 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-04 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 6e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 3e-67
Identities = 106/490 (21%), Positives = 170/490 (34%), Gaps = 101/490 (20%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
F A TY E F+ + A + +G N + R + +E +++F+
Sbjct: 42 FTDAHIEVNI-----------TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM 90
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
G + V E L++S+N +Q T + K L+K+ V L I+ +I
Sbjct: 91 PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKII 150
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ G S +T + + V S +A+IM +SGSTGLP
Sbjct: 151 IMDSKT-----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLP 205
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
KGV + H + + I L+ +P H M + G
Sbjct: 206 KGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG------MFTTLGYLICG 259
Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
+ ++ K VP +F + ++ K
Sbjct: 260 FRVVLMYRFEEELFLRSLQD--------YKIQSALLVPTLFSFFAKSTLIDK-------- 303
Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
+D ++ + GGAPLS +
Sbjct: 304 -----------------------------YD---LSNLHEI--------ASGGAPLSKEV 323
Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
+ I Q YGLTET + + D G VG VP K+V D G
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG---- 379
Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
K + RGE+ V G + +GY NNP T+ + +D+ G W ++GDI D
Sbjct: 380 --KTLGVNQRGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYWDEDEHFF 433
Query: 578 IIDRKKDIVK 587
I+DR K ++K
Sbjct: 434 IVDRLKSLIK 443
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 1e-66
Identities = 113/490 (23%), Positives = 173/490 (35%), Gaps = 101/490 (20%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
F A G + +Y E +++C L N+G VD R A+ +E C E+FI
Sbjct: 44 FTNAVTGVDY-----------SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFI 92
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
+ V L+HSL ++ T + K L K+ V ++ TIK ++
Sbjct: 93 PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIV 152
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ G T + S + + VA+IM +SGSTGLP
Sbjct: 153 ILDSK-----VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207
Query: 291 KGVMITHGNIVATAAAIKTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
KGV +TH NIV + + I L +P H M + G
Sbjct: 208 KGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFG------MFTTLGYLICG 261
Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
+ ++ K T + VP +F + ++ K
Sbjct: 262 FRVVMLTKFDEETFLKTLQD--------YKCTSVILVPTLFAILNKSELLNK-------- 305
Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
+D ++ + GGAPLS +
Sbjct: 306 -----------------------------YD---LSNLVEI--------ASGGAPLSKEV 325
Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
+ + Q YGLTET + + D G G VP K++ D
Sbjct: 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTK---- 381
Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
K + RGE+ V G + GY NNP T E+ +DE G W +TGDIG +
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYDEEKHFF 435
Query: 578 IIDRKKDIVK 587
I+DR K ++K
Sbjct: 436 IVDRLKSLIK 445
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 7e-66
Identities = 99/470 (21%), Positives = 172/470 (36%), Gaps = 94/470 (20%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ + +Y E+ RA A+ LV G V R A E VE + + R
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
+ + ++ L + + + + ++CD + ++A+++ + + + GS D+
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
+ T+ R D A I+YTSG+TG KG M++H N+ +
Sbjct: 141 AGASEAFATID----------RGADDL--------AAILYTSGTTGRSKGAMLSHDNLAS 182
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSK 359
+ + DV + LP+ H L + + + ++ D
Sbjct: 183 NSLTLVDYW-RFTPDDVLIHALPIYHTHGL-----FVASNVTLFARGSMIFLPKFDPDKI 236
Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
+ + + T++ VP + R L
Sbjct: 237 LD-------LMARATVLMGVPTFYTR---------------------------LLQSPR- 261
Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
+R I G APL AD+ R + G + + YG+
Sbjct: 262 -----------LTKETTGH--------MRLFISGSAPLLADTHREWSAKTGHAVLERYGM 302
Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
TET ++ D G VGP +P ++ + G K +PR G I V G N
Sbjct: 303 TETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETG------KELPRGDIGMIEVKGPN 356
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V GY+ P KT ++ D G +F TGD+G++ G + I+ R KD+V
Sbjct: 357 VFKGYWRMPEKTKSEFRDD--G--FFITGDLGKIDERGYVHILGRGKDLV 402
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 2e-64
Identities = 94/518 (18%), Positives = 177/518 (34%), Gaps = 107/518 (20%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
++A + + + + + + + + + E+ +
Sbjct: 20 SLADRIDAAAEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKK 64
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
ASG+ G + +++ + +R + T V I L H LN+++
Sbjct: 65 LASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSE 124
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
TTL+ S + V ++ V + V+S SEV G
Sbjct: 125 ATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------------VNSLSEVMDSG 167
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
+ + + VA+I YT G+TG+PKGVM+TH N+ A A + D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVG 226
Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTKGDVSVLKPTLMAAVP 380
+P+ H E ++M+ G + M + + ++ K T AVP
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEY-----VVMGMFNQEMLAE-----NIEKYKGTFSWAVP 276
Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
+ L L + + +
Sbjct: 277 PALN--------------VLVNTLESSNKTYDWSYL------------------------ 298
Query: 441 AVLGGRIRFMICGGAPLSAD-SQRF------INICMGAPIGQAYGLTETCAGSTFSEWDD 493
+ G P++ ++ Q +G+TE C T +
Sbjct: 299 -------KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 494 PS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTS 549
G P+ +K++S ++G + + GEIV+ G N+ GY+ +
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDG------RELGVGESGEIVIRGPNIFKGYWKREKENQ 405
Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
E + DE+G +F TGD+G + +G L DR K+++K
Sbjct: 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 2e-62
Identities = 102/474 (21%), Positives = 164/474 (34%), Gaps = 104/474 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +V A ASGL G + + E+ +AF G + +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L ++ LI + +K+ + +K + DS G
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCV--------DSAPDG------ 155
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
FSE+ + + + S + V + Y+SG+TGLPKGVM+TH ++ + A
Sbjct: 156 CLHFSELTQADENEAPQVDI-SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD 214
Query: 312 P---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKIKK 362
DV L LP+ H+ ++ C + G+ + + I+K
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIY-----ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
K ++ VP + + K+ ++
Sbjct: 270 --------YKVSIAPVVPPVMM--------------SIAKS----------PDLDK---- 293
Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE 481
D S+R + GGAPL + A +GQ YG+TE
Sbjct: 294 --------HD---LSSLRMI--------KSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
Query: 482 TCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVG 533
E D G G V +K+V + G +P GEI +
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG------ASLPRNQPGEICIR 388
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
G + GY N+P TS + G W +TGDIG + D L I+DR K+++K
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKE--G--WLHTGDIGYIDDDDELFIVDRLKELIK 438
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 1e-59
Identities = 102/476 (21%), Positives = 168/476 (35%), Gaps = 100/476 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +V + A+ G N + +L C E+ ++F + T
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + +I +++ + K+ + + + I D +E G
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCI----DDNESVPIPEG------ 199
Query: 252 VSSFSEVEKLGKRSPVDPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
F+E+ + + S + V + Y+SG+TGLPKGVM+TH +V + A
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 310 LIP---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKI 360
DV L LP+ H+ ++ C + G+ + + I
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIY-----ALNSIMLCGLRVGAAILIMPKFEINLLLELI 314
Query: 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSW 420
++ K T+ VP I V+ + K+ + E
Sbjct: 315 QR--------CKVTVAPMVPPI-------VL-------AIAKS----------SETEK-- 340
Query: 421 FGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGL 479
+D S+R V G APL + A +GQ YG+
Sbjct: 341 ----------YD---LSSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 480 TETCAGSTFSEWDDPS-----VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIV 531
TE S G G V +K+V D G + GEI
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG------DSLSRNQPGEIC 433
Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
+ G + GY NNP T+E +D+ G W +TGDIG + D L I+DR K+++K
Sbjct: 434 IRGHQIMKGYLNNPAATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIK 485
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-57
Identities = 100/488 (20%), Positives = 166/488 (34%), Gaps = 111/488 (22%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L G+ TY E+ A + A + R A+ A +E +A +
Sbjct: 42 LRFGERSL-TYAELAAAAGATAGRIGG-AG----RVAVWATPAMETGVAVVAALLAGVAA 95
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V + G+ L H L+++ + ++ +
Sbjct: 96 VPLNPKSGDKELAHILSDSAPSLVLAP--------------------------PDAELPP 129
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
G + V + R V A+++YTSG+TG PKG +I +
Sbjct: 130 ALGALERVDVDVRA-------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALAT 182
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT------DT 356
T A+ DV + LPL HV ++L + G ++
Sbjct: 183 TLDALADAWQ-WTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFSTEGA 236
Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
+ ++ G T++ VP ++ R+ +
Sbjct: 237 ARELNDG---------ATMLFGVPTMYHRI--------------------------AETL 261
Query: 417 EGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
A L R ++ G A L I G + +
Sbjct: 262 PADPELAKALAGA------------------RLLVSGSAALPVHDHERIAAATGRRVIER 303
Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN 536
YG+TET ++ +P G VG P+P ++LV ++G + GEI V G N
Sbjct: 304 YGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPN 362
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYIS 595
+ Y N P T+ + D G +F TGD+ PDG + I+ RK D++K G I
Sbjct: 363 LFTEYLNRPDATAAAFTED--G--FFRTGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIG 417
Query: 596 LGKVEAAL 603
G++E AL
Sbjct: 418 AGEIENAL 425
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 5e-57
Identities = 100/472 (21%), Positives = 159/472 (33%), Gaps = 106/472 (22%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
D TY ++ A A L G R A+L VE+ F G + V I
Sbjct: 40 TDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L+++ +I + + A+ + V + S
Sbjct: 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA------ 152
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATA 304
E+L + +P++ IMYTSG+TG PKGV+ TH ++ + A
Sbjct: 153 -------------ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA 199
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------TDTSS 358
++ + I + D L LP+ HV L + G TL T S
Sbjct: 200 SSWASTI-DVRYRDRLLLPLPMFHVAALT------TVIFSAMRGVTLISMPQFDATKVWS 252
Query: 359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG 418
I + + + AVPAI + V
Sbjct: 253 LIVEE--------RVCIGGAVPAIL---------------------------NFMRQVPE 277
Query: 419 SWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478
+ + R+ I GGAP+ + + Q Y
Sbjct: 278 ------------FAELDAPDF--------RYFITGGAPMPEALIKIYAA-KNIEVVQGYA 316
Query: 479 LTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGG 534
LTE+C G T +D G G + + + G GE+V+
Sbjct: 317 LTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR--GDDG-----VIREHGEGEVVIKS 369
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
+ Y+N P T + + + G WF TGDIG++ +G L I DR KD++
Sbjct: 370 DILLKEYWNRPEATRDAF-DN--G--WFRTGDIGEIDDEGYLYIKDRLKDMI 416
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 2e-55
Identities = 85/531 (16%), Positives = 162/531 (30%), Gaps = 137/531 (25%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W + + +SHP A + G+ + +Y E+
Sbjct: 27 WIDQ-PLTRILTVGVQSHP-HS-------------LA--------IICGERQL-SYIELD 62
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
+ + A+ L G A + E++I F + + V+ S + L
Sbjct: 63 RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
+ + Q LI + + ++ + + ++ + ++
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD-------------- 168
Query: 253 SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312
+ + + VD S + VA + GSTG PK + TH + + A +
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC- 227
Query: 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
+ L LP H + G + G + M ++
Sbjct: 228 GLNSNTRLLCALPAPHNFM------LSSPGALGVLHAGGCVVMAPNPEP--------LNC 273
Query: 371 L------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
+ + + VP+ W
Sbjct: 274 FSIIQRHQVNMASLVPSAVI--------------------------------------MW 295
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
LE+ +S ++ + GGA R + + + Q +G+ E
Sbjct: 296 -LEKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL- 345
Query: 485 GSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGF 535
++ DD + GR IK+V DE + +P G + G
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSD--DEIKIV--DEQY-----REVPEGEIGMLATRGP 395
Query: 536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GY+ +P S+V DE ++Y+GD+ Q PDG L ++ R KD +
Sbjct: 396 YTFCGYYQSPEHNSQV--FDEDN--YYYSGDLVQRTPDGNLRVVGRIKDQI 442
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 1e-53
Identities = 95/530 (17%), Positives = 161/530 (30%), Gaps = 139/530 (26%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W G T L + DR A + G+ W +Y E+
Sbjct: 22 WAGE-TFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
RA A+G G R + E+F FR V S + +
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
+ I V S L T+KN+I
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE--------------F 163
Query: 253 SSFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
++ + P V S VA + + GSTGL K + TH + + + +
Sbjct: 164 LPLEDLHTEPVKLPEVKSS-----DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL 371
S VYLA LP+AH L++ ++ + G + ++ + S
Sbjct: 219 -WLDHSTVYLAALPMAHNYPLSSPGVL----GVLYAGGRVVLSPSPSP--------DDAF 265
Query: 372 ------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
K T+ A VP + W
Sbjct: 266 PLIEREKVTITALVPPLAM--------------------------------------VW- 286
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
++ S ++ + GGA SA++ R + G + Q +G+ E
Sbjct: 287 MDAASSRRDDLSS--------LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL-- 336
Query: 486 STFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
++ DDP + G+ P P ++ D+ + + G ++ G
Sbjct: 337 VNYTRLDDPEEIIVNTQGK--PMSPYDESRVW--DDHD-----RDVKPGETGHLLTRGPY 387
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GY+ + E G ++ TGDI ++ DG + + R KD +
Sbjct: 388 TIRGYYKAEEHNAAS--FTEDG--FYRTGDIVRLTRDGYIVVEGRAKDQI 433
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 1e-53
Identities = 77/476 (16%), Positives = 139/476 (29%), Gaps = 122/476 (25%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ E+ R + A+ L G R A++A + IA R + L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + ++T + + +++ + +I+ + + + G
Sbjct: 91 AELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLVRDGEPYSYG------ 142
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
P++ A I YTSG+TGLPK +I + + T +
Sbjct: 143 -------------PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 312 P-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
GR +V L +PL H G + L + V
Sbjct: 190 GLRHGRHNVVLGLMPLYH-----------VVGFFAVLVAALAL------------DGTYV 226
Query: 371 L----------------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
+ + T + A P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHL------------------------------- 255
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
L A L +R + GA + ++ +
Sbjct: 256 -------------DALAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIV 531
YG TE + + P +++V GG D+ + GE++
Sbjct: 302 NIYGTTEAMNSLYMRQPKTGTEMA---PGFFSEVRIV--RIGG--GVDEIVANGEEGELI 354
Query: 532 V-GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V + GY N P T+E + + G W+ T D+ P+G + I+ R D++
Sbjct: 355 VAASDSAFVGYLNQPQATAEK--LQD-G--WYRTSDVAVWTPEGTVRILGRVDDMI 405
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-53
Identities = 93/489 (19%), Positives = 158/489 (32%), Gaps = 86/489 (17%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
TYGE+ +RA FAS L G + + R ++ V +AF G +
Sbjct: 42 YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V + L ++ L + +I ++ ++ S + +
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI----------- 149
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
VS + + E + +P + + +A +Y+SGSTG PKG + TH N+
Sbjct: 150 VSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSK 359
TA I +DV + L L + AI T ++
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269
Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
+ + +PT+ VP ++ +
Sbjct: 270 LVE--------HRPTVFYGVPTLY---------------------------ANMLVSPN- 293
Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
A ++R G L + G I G
Sbjct: 294 -----------LPARADVAIRIC--------TSAGEALPREIGERFTAHFGCEILDGIGS 334
Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
TE + G G PVP I+L DE G +P G++ + G +
Sbjct: 335 TEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR--DEAG-----HAVPDGEVGDLYIKGPS 387
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
Y+NN K+ + + W +GD P+GC R D++K+ G+Y+S
Sbjct: 388 AAVMYWNNREKSRATFLGE-----WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSP 441
Query: 597 GKVEAALIS 605
+VE L+
Sbjct: 442 VEVEMVLVQ 450
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 5e-52
Identities = 80/484 (16%), Positives = 144/484 (29%), Gaps = 110/484 (22%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ G+ + +Y E+ A + A L G A + E +I F + +
Sbjct: 44 VIDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDGS 237
V S L ++ + LI D + L+ + +I+ V + G
Sbjct: 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
+ + P+ + VA + G+TG PK + TH
Sbjct: 163 H---------------NLQDAINHPAEDFTATPSPA-DEVAYFQLSGGTTGTPKLIPRTH 206
Query: 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTD 355
+ + + + YL +P AH M G G T+ +
Sbjct: 207 NDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYA------MSSPGSLGVFLAGGTVVLAA 259
Query: 356 TSSKIKKGTKGDVSVL------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY 409
S + + A VP
Sbjct: 260 DPSA--------TLCFPLIEKHQVNVTALVPPAV-------------------------- 285
Query: 410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469
L + + + GGA LSA I +
Sbjct: 286 -SLWLQALIEGESRAQLASL------------------KLLQVGGARLSATLAARIPAEI 326
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPM 525
G + Q +G+ E T DD + + G P+ P + + D G P+
Sbjct: 327 GCQLQQVFGMAEGLVNYTRL--DDSAEKIIHTQGYPMCPDDEVWVA--DAEG-----NPL 377
Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
P+ G ++ G GY+ +P + D G ++ +GD+ + P+G + + R+
Sbjct: 378 PQGEVGRLMTRGPYTFRGYYKSPQHNASA--FDANG--FYCSGDLISIDPEGYITVQGRE 433
Query: 583 KDIV 586
KD +
Sbjct: 434 KDQI 437
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-28
Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 36/273 (13%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGL-VNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
+ G + TY ++ A A L R + + ++ I C+ +I
Sbjct: 20 ITDGQESY-TYQNLYCEASLLAKRLKAYQQ---S-RVGLYIDNSIQSIILIHACWLANIE 74
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
+ I + L + + + + V + C + + S +G ++
Sbjct: 75 IAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNT 134
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLPKGVMITHGN 299
++ + K SP + S N +A IM+TSG+TG K V T N
Sbjct: 135 MGIQYDTSNE-------TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN 187
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------ 353
A+A K + R +L+ LP+ H+ + S++L A+ G T+ +
Sbjct: 188 HYASAIGCKESL-GFDRDTNWLSVLPIYHI---SGLSVLL---RAVIEGFTVRIVDKFNA 240
Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
+ IK + T ++ VP + +
Sbjct: 241 EQILTMIKNE--------RITHISLVPQTLNWL 265
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-26
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPP 502
++ ++ GGA LSA + + PI ++G+TETC+ + + VG P
Sbjct: 275 NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+K+ + GE+++ G NV GY + ++ + G +F
Sbjct: 333 SANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPT-DLTGTFE-N--G--YF 377
Query: 563 YTGDIGQVYPDGCLEIIDRKKDIV 586
TGDI ++ +G + I DR+KD++
Sbjct: 378 NTGDIAEIDHEGYVMIYDRRKDLI 401
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 18/223 (8%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ T+ + RA ASGL+ G + R AIL++ C E +
Sbjct: 25 FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
+ + L D + L + + ++ + ++ V SL +K +
Sbjct: 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG----- 138
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
F+ + L +P VI++T+ G P+G +I+ GN++
Sbjct: 139 -----------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
+++ +DV L LPL HV L + AG A
Sbjct: 188 AQSSLVDAWR-LTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS 229
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+R + P + +RF C A +G +ET STF+ + D G P+
Sbjct: 273 SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFW 329
Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+ +V D +P+P GEIV+ G V GY+NN T ++ + G W
Sbjct: 330 RTVAVV--DAED-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-N--G--WH 377
Query: 563 YTGDIGQVYPDGCLEIIDR--KKDIVK 587
+TGD+G+ DG L R +K+++K
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK 404
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 81/501 (16%), Positives = 161/501 (32%), Gaps = 117/501 (23%)
Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+ E+ + + A+ L G R A++ EW++ GC R + + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
+++ L ++ ++ + ++++ V+S +++ + + G N+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD-------GWLNF 187
Query: 251 T--VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
++ S + + + I +TSG++GLPK ++
Sbjct: 188 KKLLNEASTTHHCVETGSQEA--------SAIYFTSGTSGLPKMAEHSYS---------- 229
Query: 309 TLIPNPGRSDVYLAYLPLA-HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKG-TKG 366
+ L A IM ++DT G
Sbjct: 230 ----------SLGLKAKMDAGWTGLQASDIMWT------------ISDT------GWILN 261
Query: 367 DVSVLKPTLMAAVPAIFDRVRE---GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG- 422
+ L + + V+ K + S G
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-----------------SMMGA 304
Query: 423 --AWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
+ RML + F ++ + G L ++ G I ++
Sbjct: 305 PIVY---RMLLQQDLSSYKFPHLQNCVT--------VGESLLPETLENWRAQTGLDIRES 353
Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVG 533
YG TET S+ G +G C ++++ D+ G +P G+I +
Sbjct: 354 YGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII--DDKG-----NVLPPGTEGDIGIR 406
Query: 534 G-----FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
+ +GY +NP KT+ + D ++ GD G DG + + R DI+
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGD-----FWLLGDRGIKDEDGYFQFMGRADDIINS 461
Query: 589 QHGEYISLGKVEAALISSDYV 609
G I +VE AL+ V
Sbjct: 462 S-GYRIGPSEVENALMEHPAV 481
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 9e-25
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSV---- 496
+R ++ GG+ RF MG + Q YGLTET + + S
Sbjct: 294 TLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351
Query: 497 ---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKT 548
+ G P+P +++ DE G +P+P+ GE+ + G +T GY+ N T
Sbjct: 352 TLKAKTGLPIPLVRLRVA--DEEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D G +F TGDI +G +EI DR KD++K GE+IS +E AL+
Sbjct: 405 RSALTPD--G--FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMG 456
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 1e-12
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 17/205 (8%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ TY EV+ RA GL G V R A L A+ + T
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
L + + LN + L+ D L + A+ LKT+++ + + E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE------- 155
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATA 304
++ E+ +P + + YT+G+TGLPKGV+ +H ++ +
Sbjct: 156 -----GYLAY---EEALGEEADPVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHV 329
AA DV L +P+ HV
Sbjct: 207 AASLVDGTALSEKDVVLPVVPMFHV 231
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 45/277 (16%)
Query: 61 PGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKF 120
+ + + ++ A + P D F+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFT--------FMDYEQDWD- 53
Query: 121 EKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSI 180
G T+ +++ R + A L G D R I A +E+ +AF G +
Sbjct: 54 -----GVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107
Query: 181 TVVTIY---SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237
V + + ++ L+++ ++ S + + + E D
Sbjct: 108 IAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
+ D+ + A + YTSGST P GV+++H
Sbjct: 168 DLDAP----------------------NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSH 205
Query: 298 GNIVATAAAIK-----TLIPNPGRSDVYLAYLPLAHV 329
N+ + P + +++LP H
Sbjct: 206 QNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 40/176 (22%), Positives = 54/176 (30%), Gaps = 45/176 (25%)
Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP-- 494
G I ++ G + A + +RF + A +Y L E S+ P
Sbjct: 311 GNILTILSGSERVQAATIKRFAD--RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368
Query: 495 ---------SVGRVGPPVPCCYIKLVSWDEGGYKTSD----------KPMPR---GEIVV 532
S G P L+S S P GEI V
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLIS---YMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
Query: 533 GGFNVTAGYFNNPGKTSEVYKVDERGMC-------WFYTGDIGQVYPDGCLEIIDR 581
G NV GY+ P ++ + W TGD G V DG + II R
Sbjct: 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
E TY ++ A + A+ L G R +L + AF GC V IY
Sbjct: 39 ETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 189 LGEDA---LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
E + ++ ++ + +KK + + +
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT--------------------ADELNTNP 138
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
+ +E S S N +A + YTSGST PKGVM++H N++
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN 197
Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVL 330
I T + + ++LP H +
Sbjct: 198 KIFTSF-HMNDETIIFSWLPPHHDM 221
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 39/184 (21%), Positives = 54/184 (29%), Gaps = 53/184 (28%)
Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDPSV 496
G P+ ++ + F G YGL E T
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAF--KEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346
Query: 497 -----------GRVGPPVPCC--YIKLVSWDEGGYKTSDKPMPR---------------- 527
RV KLVS S P+
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVS--------SGNPIQEVKIIDPDTLIPCDFDQ 398
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVY----KVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
GEI V +V GY+N P +T + K DER + TGD+G + L + R
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRI 457
Query: 583 KDIV 586
KD++
Sbjct: 458 KDLI 461
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 4e-22
Identities = 83/402 (20%), Positives = 126/402 (31%), Gaps = 117/402 (29%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPL---AHVLELAAE 335
I++TSG+TG PKGV I+H N+++ + + + LA P V+ A
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP- 208
Query: 336 SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVRE 388
+ G TL + K D L + + P+ D
Sbjct: 209 --------TLALGGTLFA------LPKELVADFKQLFTTIAQLPVGIWTSTPSFAD---- 250
Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
A+ F + ++
Sbjct: 251 -------------------------MAMLSDDFCQAKM----------PALTHF------ 269
Query: 449 FMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF---SEWDDPSVGRV--GPP 502
G L+ + ++ A I AYG TE + + + R+ G P
Sbjct: 270 --YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327
Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE------- 550
P YI + DE G K + GEI+V G V+ GY NNP KT+E
Sbjct: 328 KPDSPTYI-I---DEDG-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKG 378
Query: 551 --VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
Y TGDIG + D L R +K G I L V L S
Sbjct: 379 QPAYH----------TGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPM 427
Query: 609 VDN--IMIHADPFHN--YCVALVVPSHKALEKWAHEASIKYE 646
V + + + H +A +V E++ E +
Sbjct: 428 VASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-22
Identities = 79/372 (21%), Positives = 120/372 (32%), Gaps = 108/372 (29%)
Query: 259 EKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
+ + DP+ N A IMYTSG+TG PKG + TH NI + + +
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQ-- 647
Query: 318 DVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL--- 371
D +L+ A + A ++ + L + + T D L
Sbjct: 648 DTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLDTERLTDL 692
Query: 372 ----KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
+M A A+F L W
Sbjct: 693 ILQENVNVMFATTALF---------------------------NLLTDAGEDWMKG---- 721
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGS 486
+R ++ GG S ++ + I + YG TE +
Sbjct: 722 -------------------LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762
Query: 487 TFSEWDDPSVGR----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNV 537
T D +G P+ YI L +E + P GE+ + G V
Sbjct: 763 TAHVVHDLPDSISSLPIGKPISNASVYI-L---NEQS-----QLQPFGAVGELCISGMGV 813
Query: 538 TAGYFNNPGKTSEV-----YKVDERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
+ GY N T E +K E + Y TGD+ + PDG +E R D VK+ G
Sbjct: 814 SKGYVNRADLTKEKFIENPFKPGET-L---YRTGDLARWLPDGTIEYAGRIDDQVKI-RG 868
Query: 592 EYISLGKVEAAL 603
I L ++E L
Sbjct: 869 HRIELEEIEKQL 880
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 4e-20
Identities = 80/391 (20%), Positives = 125/391 (31%), Gaps = 107/391 (27%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL---AHVLELAAES 336
I+YTSGSTG PKGV IT+ +V+ V+L P V+++
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-LQTGQVFLNQAPFSFDLSVMDIYP-- 205
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREG 389
++ G TL I K L + + P+
Sbjct: 206 -------SLVTGGTLWA------IDKDMIARPKDLFASLEQSDIQVWTSTPSFA------ 246
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
+ L + + +++
Sbjct: 247 -------------EMC--------------------LMEASFSESMLPNMKTF------- 266
Query: 450 MICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-----PV 503
+ G L + ++ I A I YG TE T + + +
Sbjct: 267 -LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325
Query: 504 P--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE--VYKVDE 556
I + E G P GEIV+ G +V+ GY +P T + E
Sbjct: 326 SDCRLLI-M---KEDG-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 557 RGMCWFY-TGDIGQVY-PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--- 611
R Y TGD G Y +G L R +KL HG + L ++E L + YV+
Sbjct: 377 R-A---YKTGDAG--YVENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVI 429
Query: 612 IMIHADPFHNYCVALVVPSHKALEKWAHEAS 642
+ I ++Y +A+VVP + EK S
Sbjct: 430 VPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS 460
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-19
Identities = 83/412 (20%), Positives = 128/412 (31%), Gaps = 120/412 (29%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
D + I+YTSGSTG PKGV I+ N+ + I P ++L
Sbjct: 134 VSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP-VSGGKIFLNQA 191
Query: 325 PLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
P + V++L + G TL + K VL
Sbjct: 192 PFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVLFEELKKSGLN 236
Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
+ + P+ + L +
Sbjct: 237 VWTSTPSFV-------------------QMC--------------------LMDPGFSQD 257
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
+ + G L + + A I YG TE T E +
Sbjct: 258 LLPHADTF--------MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309
Query: 494 PSVGR-----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFN 543
+ R VG P +I + DE G +P+P GEIV+ G +V+ GY
Sbjct: 310 DVISRSESLPVGFAKPDMNIFI-M---DEEG-----QPLPEGEKGEIVIAGPSVSRGYLG 360
Query: 544 NPGKTSE---------VYKVDERGMCWFYTGDIGQVY-PDGCLEIIDRKKDIVKLQHGEY 593
P T + Y+ TGD G + DG + R +KL HG
Sbjct: 361 EPELTEKAFFSHEGQWAYR----------TGDAG--FIQDGQIFCQGRLDFQIKL-HGYR 407
Query: 594 ISLGKVEAALISSDYVDN--IMIHAD-PFHNYCVALVVPSHKALEKWAHEAS 642
+ L ++E + S YV + ++ + Y +A +VP EK S
Sbjct: 408 MELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTS 459
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 9e-18
Identities = 80/405 (19%), Positives = 129/405 (31%), Gaps = 139/405 (34%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
+ + S + +A ++YTSG+TG PKG M+ H I + + D +
Sbjct: 173 TNLHVPSKSTD-LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFA 230
Query: 325 PL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
+ A V E+ A+ G++L + I K T D + T
Sbjct: 231 SISFDASVWEMFM---------ALLTGASLYI------ILKDTINDFVKFEQYINQKEIT 275
Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
++ P L D
Sbjct: 276 VITLPPTYV--------------------------------------------VHL-DPE 290
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQ-------RFINICMGAPIGQAYGLTETCAGST 487
S++ + I G+ S +IN AYG TET +T
Sbjct: 291 RILSIQTL--------ITAGSATSPSLVNKWKEKVTYIN---------AYGPTETTICAT 333
Query: 488 FSEWDDPSVGRV---GPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTA 539
++G G P+ YI + DE + GE+ +GG +
Sbjct: 334 TWVATKETIGHSVPIGAPIQNTQIYI-V---DENL-----QLKSVGEAGELCIGGEGLAR 384
Query: 540 GYFNNPGKTSE------------VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GY+ P TS+ +YK TGD + DG +E + R + VK
Sbjct: 385 GYWKRPELTSQKFVDNPFVPGEKLYK----------TGDQARWLSDGNIEYLGRIDNQVK 434
Query: 588 LQHGEYISLGKVEAALISSDYVDN--IMIHAD-PFHNYCVALVVP 629
+ G + L +VE+ L+ Y+ + +H D Y A V
Sbjct: 435 I-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVS 478
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-13
Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 21/198 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ ++ + A+ V G + ++ +++ G + V L
Sbjct: 88 TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 192 DALIHSLNETQVTTLICDS--KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
+++ + + + ++C + +++ + I + G I
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDF 202
Query: 250 WTV-----SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
F D ++ ++SG+ G PK V + +
Sbjct: 203 RKELEESSPIFERPTGEVSTKNEDI--------CLVYFSSGTAGFPKMVEHDNTYPLGHI 254
Query: 305 AAIKTLIPNPGRSDVYLA 322
K N ++
Sbjct: 255 LTAKYWQ-NVEDDGLHYT 271
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+++ + G PL+ + G + + +G TET W +P G +G P P
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401
Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGG-----FNVTAGYFNNPGKTSEVYKVDER 557
I+L+ D G + GEIV+ + Y +P +T E +
Sbjct: 402 YKIELM--DRDG-----RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-- 452
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
+++TGD+ + DG L + R DI+K G + +VE+ALI V
Sbjct: 453 ---YYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAV 500
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 7e-12
Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 52/275 (18%)
Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPL 326
P + + + G+TG PK V+ I A + + + S LA +P
Sbjct: 85 PQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPT 144
Query: 327 -AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385
H++ + L G + + + + +G V L+ V
Sbjct: 145 GPHIVGAINKERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN 203
Query: 386 VREGVVKKVEEKGGLTKNLFNI-GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
+ L R L +R + +S+ +
Sbjct: 204 QD-------------IRFLVTTPPVLRELL------------KRPEVVLQMKQSLAQI-- 236
Query: 445 GRIRFMICGGAPLSADSQRFI--NICMGAPIGQAYGLTETC--AGSTFSEWDDPSVGRVG 500
GG L+ D +FI I +YG T + S + V
Sbjct: 237 ------TLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVI-YD 289
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV 532
P +V + + RG ++V
Sbjct: 290 SFSPFITYDVVDSITA------QTVEYGERGNVIV 318
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-------GRS 317
S + + P A ++YTSGSTG PKGV ++ N+ + + A LI N G
Sbjct: 166 SDILNNYPENL-DAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224
Query: 318 DVYLAYLPL---AHVLEL 332
+L H+ E+
Sbjct: 225 GKFLCLASRAFDVHIGEM 242
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 48/277 (17%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRV--GPPVP- 504
++ GG ++ +Q+ + + YG TE G + S G P+
Sbjct: 297 VYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS-DTRCIGHPLGD 355
Query: 505 -CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
++ L G S++ + + GE+V+ G V GY N P + M
Sbjct: 356 SVAHV-L---APG----SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRK-M- 405
Query: 561 WFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHAD 617
Y TGDI ++ D + + RK + VK+ G+ + LG+V + S D + + +
Sbjct: 406 --YRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLN 462
Query: 618 P---FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
+ V+ V S A+++ E N E N ++QA L
Sbjct: 463 HPGTSKQFLVSFVASS---------GAAVRGELRWINENYKEINNSLRQAC-----EQTL 508
Query: 675 DKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKA 710
+ +P I + P L + K + L+
Sbjct: 509 PAYMVPDFIIPISFIP------LRDTSAKTDAKALEH 539
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-10
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
S P + +A I ++SG+TG PK + TH I L +L
Sbjct: 155 SVARPCFAADQ-IAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL--AFAPQMRFLVNS 211
Query: 325 PLA 327
PL+
Sbjct: 212 PLS 214
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 34/207 (16%)
Query: 448 RFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSE--WDDPSVGRV--GPP 502
R ++ GG LS +R + + YG TE + DD + G
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338
Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR----GEIVVGGFNVTAGYFNNPGKTSEVYKVD- 555
+ + L DE G + + GEIV G + GY N+ +T +
Sbjct: 339 IAGTAVLL-L---DEHG-----QEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELP 389
Query: 556 -----ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
R Y TGD + G L I R VKL +G + L +E +
Sbjct: 390 YRGRLLR-A---YRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGI 444
Query: 610 DN--IMIHADPFHNYCVALVVPSHKAL 634
+ +++ + A
Sbjct: 445 LDCALLVRERNGVKQLLCAWTGKADAS 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 32/259 (12%), Positives = 71/259 (27%), Gaps = 86/259 (33%)
Query: 521 SDKPMPRGEIVV---GGFNVTAGYFNNPGKTS---EV---YKVDER---GMCWFYTGDIG 568
+P +++ G GKT +V YKV + + W ++
Sbjct: 146 ELRPAKN--VLIDGVLGS----------GKTWVALDVCLSYKVQCKMDFKIFWL---NLK 190
Query: 569 QVY-PDGCLEIIDR------KKDIVKLQHGEYISLGKVEAA------LISSDYVDNIMI- 614
P+ LE++ + + H I L L S Y + +++
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 615 -------HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+ F+ C L+ K + + LS +++ L+
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQV----------TDFLSAATTTHISLDHHSMTLTP 300
Query: 668 ------VAKAAKLDKFEIP---------------AKIKLMPEPW----TPEAGLVTAALK 702
+ K ++P I+ W +T ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 703 IKREQLKAKFKDDLQMLYQ 721
L+ + + ++
Sbjct: 361 SSLNVLEP---AEYRKMFD 376
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 9e-05
Identities = 75/585 (12%), Positives = 160/585 (27%), Gaps = 166/585 (28%)
Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
H++D + F+ F + + +D L++ ++ +I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKD 59
Query: 212 QLKKLSAVSSSLKTIKNVIY--FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP 269
+ + +L + + + F + + + +S ++ P
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQR-------QP 105
Query: 270 SLPSQNGVAVI--MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP----------GRS 317
S+ ++ + +Y V + A+ L P G++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---- 373
++A V + + I + L + + +S +VL+
Sbjct: 165 --WVA----LDVC--LSYKVQCKMDFKIFW---LNLKNCNS--------PETVLEMLQKL 205
Query: 374 --TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
+ + D ++ + L + L + Y+ L + W
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAW 259
Query: 432 DA-------IV---FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481
+A ++ FK V L I LT
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-------------------TLTP 300
Query: 482 TCAGSTFSEW------DDPSVGRVGPPVPCCYI------KLVSWDEGGYKTSDKPMPRGE 529
S ++ D P P I L +WD +K +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNC-DKLTT 357
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
I+ NV P + +++ + V+P +
Sbjct: 358 IIESSLNVL-----EPAEYRKMFD------------RLS-VFPPS-----------AHI- 387
Query: 590 HGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLS 649
I L + +I SD V ++ + H Y + +EK E++I +
Sbjct: 388 --PTILLSLIWFDVIKSD-VMVVV---NKLHKYSL---------VEKQPKESTISIPSIY 432
Query: 650 -ELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKI---KLMPEPW 690
EL K E + +++ +D + IP L+P
Sbjct: 433 LELKVKLENEYALHRSI--------VDHYNIPKTFDSDDLIPPYL 469
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 53/189 (28%)
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL----EIIDRKKDIVKLQHGEYISL-- 596
P + +Y +++R + D QV+ + + ++ +++L+ + + +
Sbjct: 103 RQPSMMTRMY-IEQRDRLY---ND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 597 ----GK-VEAALISSDY-VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSE 650
GK A + Y V M F + W ++K
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKM----DFKIF--------------WL---NLKN----- 191
Query: 651 LCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710
CN E V E+ Q L + + + IKL E ++R
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---------LRRLLKSK 241
Query: 711 KFKDDLQML 719
+++ L +L
Sbjct: 242 PYENCLLVL 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.26 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.2 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.64 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.63 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.52 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.76 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.69 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.74 |
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-81 Score=707.03 Aligned_cols=502 Identities=21% Similarity=0.284 Sum_probs=414.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999985 22 37999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+++... ..+..+...++.++.++..+..
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987642 2334444456666666654321
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
.. +.++..... .+.......++|+++|+|||||||.||||++||+++++.+......+ +++
T Consensus 161 ~~-----------------~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~ 221 (539)
T 1mdb_A 161 EE-----------------FLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLD 221 (539)
T ss_dssp TT-----------------SEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCC
T ss_pred cc-----------------hhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCC
Confidence 10 111111111 11122345789999999999999999999999999999998888887 899
Q ss_pred CCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
++|++++.+|++|.+++.. ++.+|+.|+++++.+... +..++..++++++|+++++|+++..+.+.....
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 293 (539)
T 1mdb_A 222 HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS--------PDDAFPLIEREKVTITALVPPLAMVWMDAASSR 293 (539)
T ss_dssp TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSS--------HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC
T ss_pred CCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCC--------HHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc
Confidence 9999999999999999874 788899999999844211 112223399999999999999999987642210
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCce
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
....++||.+++||+++++++.+.+.+.+|+++
T Consensus 294 -----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 326 (539)
T 1mdb_A 294 -----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTL 326 (539)
T ss_dssp -----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEE
T ss_pred -----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcE
Confidence 012258999999999999999999998889999
Q ss_pred ecccccchhcccccccCCC-CCCCCccCCCcCc-ceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccc
Q 004961 474 GQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (721)
+|.||+||++..++..... ....+++|+|+++ .+++|+| +++.. +++|+.|||+|+||+++.|||++|+.|+++
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 402 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHHHH
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCC---CcCCCcceEEeeCcccchhhcCChhhhhhh
Confidence 9999999976443322111 1234789999976 5899999 56655 458899999999999999999999999999
Q ss_pred cccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEE
Q 004961 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (721)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv 628 (721)
|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|+
T Consensus 403 f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv 477 (539)
T 1mdb_A 403 FT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII 477 (539)
T ss_dssp BC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cc--CC--CCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEE
Confidence 96 56 89999999999999999999999999996 6999999999999999999999999998765 36899998
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCC-CCCCccccEEEeeCCCCCCCCCccCcccccChHH
Q 004961 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK-LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~ 707 (721)
+.... .+ .++|+++++ ++ ||.||+|+.|++++++ | +|++||++|++
T Consensus 478 ~~~~~---------~~-----------------~~~l~~~l~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~ 524 (539)
T 1mdb_A 478 PRDEA---------PK-----------------AAELKAFLR-ERGLAAYKIPDRVEFVESF--P----QTGVGKVSKKA 524 (539)
T ss_dssp ESSSC---------CC-----------------HHHHHHHHH-HTTCCGGGSCSEEEECSSC--C----BCTTSCBCHHH
T ss_pred ECCCC---------CC-----------------HHHHHHHHH-hCCCCcccCCCEEEEeccC--C----CCCCcCEeHHH
Confidence 76321 00 267888888 55 9999999999999988 6 99999999999
Q ss_pred HHHHHHHHHHhhhC
Q 004961 708 LKAKFKDDLQMLYQ 721 (721)
Q Consensus 708 l~~~~~~~i~~~Y~ 721 (721)
|+++|+++|+++|+
T Consensus 525 L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 525 LREAISEKLLAGFK 538 (539)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHhcccc
Confidence 99999999999995
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-81 Score=704.79 Aligned_cols=506 Identities=23% Similarity=0.310 Sum_probs=417.5
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004961 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 155 (721)
.+.+...|++++|.++++++|+++|+++.. +|+ ++||+||.++++++|++|+++|+++|
T Consensus 16 ~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~g 74 (536)
T 3ni2_A 16 IYIPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQG 74 (536)
T ss_dssp CCCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556899999999999999999998631 233 79999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCC
Q 004961 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... .+ .++.++..
T Consensus 75 d~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 152 (536)
T 3ni2_A 75 DVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSA 152 (536)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999998877766654332 22 34444322
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh----hC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LI 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~ 311 (721)
. .....++++....... .+.....++|+++|+|||||||.||||++||+++++.+..... .+
T Consensus 153 ~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~ 218 (536)
T 3ni2_A 153 P-------------DGCLHFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218 (536)
T ss_dssp C-------------TTCEETHHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred C-------------CCccCHHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccc
Confidence 1 1234566665433221 2234567899999999999999999999999999998877654 23
Q ss_pred CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
.+.++|++++.+|++|.+++.. ++.++..|+++++.+.... ..+...++++++|++.++|+++..+.+..
T Consensus 219 -~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (536)
T 3ni2_A 219 -YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI--------GSLLGLIEKYKVSIAPVVPPVMMSIAKSP 289 (536)
T ss_dssp -CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCH--------HHHHHHHHHHTCCEEEECHHHHHHHHTCS
T ss_pred -cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCH--------HHHHHHHHHhCCeEEEccHHHHHHHHhCc
Confidence 6789999999999999999865 6778999999998543211 11233399999999999999999886521
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~- 469 (721)
. ......++||.+++||+++++++.+.+++.+
T Consensus 290 ~-----------------------------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 322 (536)
T 3ni2_A 290 D-----------------------------------------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP 322 (536)
T ss_dssp C-----------------------------------------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT
T ss_pred c-----------------------------------------------cccCCCccceEEEECCCCCCHHHHHHHHHHCC
Confidence 0 0011235899999999999999999998887
Q ss_pred CCceecccccchhccccccc-----CCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCC
Q 004961 470 GAPIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (721)
Q Consensus 470 g~~l~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (721)
+++++|.||+||++.+++.. .......+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~ 399 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLND 399 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTC
T ss_pred CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCC
Confidence 89999999999998765443 122345689999999999999997667654 4889999999999999999999
Q ss_pred CcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---c
Q 004961 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (721)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~ 621 (721)
|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +
T Consensus 400 p~~t~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 474 (536)
T 3ni2_A 400 PEATSRTID--KE--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474 (536)
T ss_dssp HHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred hhHHHhhcc--CC--CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCc
Confidence 999999996 56 89999999999999999999999999998 5999999999999999999999999997654 3
Q ss_pred eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccc
Q 004961 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 701 (721)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~g 701 (721)
.++|+|++.++. ..+ .++|+++++ ++|+.||+|+.|++++++ | +|++|
T Consensus 475 ~~~a~vv~~~~~----------~~~---------------~~~l~~~l~-~~l~~~~~p~~i~~v~~l--P----~t~~G 522 (536)
T 3ni2_A 475 VPVAFVVKSEKS----------QAT---------------EDEIKQYIS-KQVIFYKRIKRVFFIEAI--P----KAPSG 522 (536)
T ss_dssp EEEEEEEECTTC----------CCC---------------HHHHHHHHH-TTSCGGGCCSEEEECSCC--C----BCTTS
T ss_pred eeEEEEEecCCC----------CCC---------------HHHHHHHHH-HhccCCccccEEEEEecC--C----CCCCC
Confidence 589999987542 111 267889998 999999999999999998 6 99999
Q ss_pred ccChHHHHHHHHH
Q 004961 702 KIKREQLKAKFKD 714 (721)
Q Consensus 702 Ki~R~~l~~~~~~ 714 (721)
||+|++|+++|++
T Consensus 523 Ki~R~~L~~~~~~ 535 (536)
T 3ni2_A 523 KILRKNLKEKLAG 535 (536)
T ss_dssp CBCHHHHHTC---
T ss_pred CeeHHHHHHHhcc
Confidence 9999999998764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=705.70 Aligned_cols=512 Identities=21% Similarity=0.302 Sum_probs=392.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+++. ++. ...+.++++||+||.++++++|++|++.|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~-----------~~~----~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISA-----------EPK----FPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEE-----------SSC----CCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeC-----------CCc----ccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 479999999999999999999875 210 00123357999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+ ++.++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999988877777665554 4555554321
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
..+++++...............++|+|+|+|||||||.||||++||+++++.+......+ ++.++|++
T Consensus 157 -----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 224 (549)
T 3g7s_A 157 -----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTI 224 (549)
T ss_dssp -----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEE
T ss_pred -----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEE
Confidence 234666665443332222222348999999999999999999999999999999988888 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++.+|++|.+++...+.++..|+++++. ++..+.+. ++++++|+++++|++++.+.+.......
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~-- 291 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNK-- 291 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCC--
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhcc--
Confidence 9999999999998878889999999984 44444444 9999999999999999999874321100
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh----hC---
Q 004961 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC----MG--- 470 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~----~g--- 470 (721)
....+++|.+++||+++++++.+.+.+. ++
T Consensus 292 -------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 292 -------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp -------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred -------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence 0112589999999999999999888877 56
Q ss_pred CceecccccchhcccccccCCCC-CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccc
Q 004961 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~ 549 (721)
++++|.||+||++.+++...... ...+++|+|+|+++++|+|++++..+ ++|+.|||+|+||+++.|||++|+.|+
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 405 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGREL---GVGESGEIVIRGPNIFKGYWKREKENQ 405 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEE---CTTCCEEEEEESTTSCSEETTCTTGGG
T ss_pred ccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCC---CCCCceEEEEECcchhhhhCCChhhhh
Confidence 89999999999998777655433 35589999999999999997777665 488999999999999999999999999
Q ss_pred cccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEE
Q 004961 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVAL 626 (721)
Q Consensus 550 ~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~ 626 (721)
++|..+.+|.+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+
T Consensus 406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~ 484 (549)
T 3g7s_A 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAF 484 (549)
T ss_dssp TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEE
T ss_pred hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEE
Confidence 999655564459999999999999999999999999998 69999999999999999999999999988663 58899
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChH
Q 004961 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.++.. ...+ .++|+++++ ++||.||+|+.|++++++ | +|++|||+|+
T Consensus 485 vv~~~~~~--------~~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~ 534 (549)
T 3g7s_A 485 IVLKPEYR--------GKVD---------------EEDIIEWVR-ERISGYKRVREVEFVEEL--P----RTASGKLLRR 534 (549)
T ss_dssp EEECSTTT--------TSCC---------------HHHHHHHHH-TTCC-----CCCCEEEEC--C--------------
T ss_pred EEECCCcc--------CcCC---------------HHHHHHHHH-HhccCcccceEEEEeccC--C----CCCCcCEeHH
Confidence 99876420 0000 268889998 999999999999999998 6 9999999999
Q ss_pred HHHHHHHHH
Q 004961 707 QLKAKFKDD 715 (721)
Q Consensus 707 ~l~~~~~~~ 715 (721)
+|++++++.
T Consensus 535 ~L~~~~~~~ 543 (549)
T 3g7s_A 535 LLREKEAEG 543 (549)
T ss_dssp ---------
T ss_pred HHHHHhhcc
Confidence 999998764
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-80 Score=701.21 Aligned_cols=510 Identities=18% Similarity=0.219 Sum_probs=406.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
.+..+++|+++|+++||++|+++.+ + .+..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~-------~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCD-----------D-------YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEE-----------S-------SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEc-----------C-------CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3455699999999999999999753 1 123368999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch--hHHHhhhccCCCc-eEEEEecCCCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS 237 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~ 237 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+.. +.+......++.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999988764 6666666566665 55555543211
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCC---CCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
..+.++.+...........+ ....++|+++|+|||||||.||||+++|.+++..+....... .+
T Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~ 263 (580)
T 3etc_A 197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV 263 (580)
T ss_dssp ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence 12356666655443322212 246789999999999999999999999999998887766666 88
Q ss_pred CCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 315 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
.+++++++.+|++|..+++. ++.++..|+++++.++..+ + +..++..++++++|+++++|++++.|.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--- 334 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKED--- 334 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSC---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhcc---
Confidence 99999999999999988876 6778999999987532221 1 122333499999999999999999886520
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCce
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
......++||.+++||+++++++.+++.+.+|+++
T Consensus 335 ---------------------------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i 369 (580)
T 3etc_A 335 ---------------------------------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369 (580)
T ss_dssp ---------------------------------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred ---------------------------------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence 01112368999999999999999999999899999
Q ss_pred ecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc-----ccccccccCCCccc
Q 004961 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT 548 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-----~~v~~gY~~~~~~t 548 (721)
+|+||+||++..++.......+.+++|+|+|+++++|+| +++.. +++|+.|||+|+| ++++.|||++|+.|
T Consensus 370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~---~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t 445 (580)
T 3etc_A 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRL---CEVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445 (580)
T ss_dssp EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCC---CCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence 999999999887776666666779999999999999999 56665 4589999999997 78999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A 625 (721)
++.| .+ |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||+|.+|+|++.+++ +.++|
T Consensus 446 ~~~f---~~--gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a 519 (580)
T 3etc_A 446 EETW---HD--GYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519 (580)
T ss_dssp HHHE---ET--TEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred Hhhc---CC--CEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEE
Confidence 9999 66 899999999999999999999999999985 999999999999999999999999998766 35889
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.++. ..+ +.+.++|+++++ ++|++|++|+.|++++++ | +|++|||+|
T Consensus 520 ~vv~~~~~----------~~~------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~sGKi~R 570 (580)
T 3etc_A 520 TIVLTKDY----------TPS------------DSLKNELQDHVK-NVTAPYKYPRIIEFVPEL--P----KTISGKIRR 570 (580)
T ss_dssp EEEECTTC----------CCC------------HHHHHHHHHHHH-HHSCGGGCCSEEEEECC-----------------
T ss_pred EEEECCCC----------CCC------------HHHHHHHHHHHH-hhCCCccCCeEEEEeCCC--C----CCCCcCCcH
Confidence 99987642 111 223478888888 899999999999999998 6 999999999
Q ss_pred HHHHHHHHH
Q 004961 706 EQLKAKFKD 714 (721)
Q Consensus 706 ~~l~~~~~~ 714 (721)
++|++++++
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999999875
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=700.98 Aligned_cols=508 Identities=23% Similarity=0.325 Sum_probs=420.9
Q ss_pred CCCCCHHH-HHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004961 79 KGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 79 ~~~~tl~~-~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 157 (721)
+...|+.+ +|.++++++ +++|+++.. ++ +++||+||.++++++|++|+++|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34468999 899999999 999998521 22 37999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCC
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (721)
|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++....+.+......++....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999887777666656665566666543210
Q ss_pred CccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCC------CCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh-
Q 004961 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL- 310 (721)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~- 310 (721)
. ....+++++.........+.... .++|+++|+|||||||.||||++||+++.+.+......
T Consensus 160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~ 228 (548)
T 2d1s_A 160 Y-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228 (548)
T ss_dssp B-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred c-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence 0 01235666655432210111111 23899999999999999999999999999998887666
Q ss_pred --CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHH
Q 004961 311 --IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (721)
Q Consensus 311 --~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~ 384 (721)
+ ++.++|++++.+|++|++++.. ++.++ .|+++++.+ +..+.+ .++++++|+++++|++++
T Consensus 229 ~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~ 295 (548)
T 2d1s_A 229 YGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLK-----------TLQDYKCTSVILVPTLFA 295 (548)
T ss_dssp TSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHH-----------HHHHTTEEEEEECHHHHH
T ss_pred hcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHH-----------HHHHcCCcEEEecHHHHH
Confidence 5 7889999999999999999877 45556 999999843 333333 399999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHH
Q 004961 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (721)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~ 464 (721)
.+.+... ......++||.+++||+++++++.+.
T Consensus 296 ~l~~~~~-----------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~ 328 (548)
T 2d1s_A 296 ILNKSEL-----------------------------------------------LNKYDLSNLVEIASGGAPLSKEVGEA 328 (548)
T ss_dssp HHHHCSC-----------------------------------------------GGGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhCcc-----------------------------------------------cccccccceeEEEEcCccCCHHHHHH
Confidence 8865210 00112258999999999999999999
Q ss_pred HHHhh-CCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccC
Q 004961 465 INICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (721)
Q Consensus 465 ~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (721)
+.+.+ +++++|.||+||++..++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||+
T Consensus 329 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~ 405 (548)
T 2d1s_A 329 VARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVN 405 (548)
T ss_dssp HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETT
T ss_pred HHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC---CCCCCeEEEECCHHHhhhhcC
Confidence 99888 68899999999998777665444456689999999999999997667654 488999999999999999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 406 ~~~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g 480 (548)
T 2d1s_A 406 NPEATKELID--EE--GWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAG 480 (548)
T ss_dssp CHHHHHHHBC--TT--SCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred ChHHhhhccc--CC--cEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCC
Confidence 9999999996 56 89999999999999999999999999997 6999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCcccc-EEEeeCCCCCCCCCccCc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA-KIKLMPEPWTPEAGLVTA 699 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~-~i~~~~~~~~p~~~~~t~ 699 (721)
+.++|+|++.++. ..+ .++|+++++ ++|+.|++|+ .|++++++ | +|+
T Consensus 481 ~~~~a~vv~~~~~----------~~~---------------~~~l~~~~~-~~l~~~~~p~~~i~~v~~l--P----~t~ 528 (548)
T 2d1s_A 481 ELPGAVVVLESGK----------NMT---------------EKEVMDYVA-SQVSNAKRLRGGVRFVDEV--P----KGL 528 (548)
T ss_dssp EEEEEEEEECTTC----------CCC---------------HHHHHHHHH-TTSCGGGSCTTCEEECSSC--C----BCT
T ss_pred eeeEEEEEEcCCC----------CCC---------------HHHHHHHHH-HhccccccccccEEEccCC--C----CCC
Confidence 3689999987542 000 267888998 9999999999 99999988 6 999
Q ss_pred ccccChHHHHHHHHHHHHhh
Q 004961 700 ALKIKREQLKAKFKDDLQML 719 (721)
Q Consensus 700 ~gKi~R~~l~~~~~~~i~~~ 719 (721)
+||++|++|+++|++.|++|
T Consensus 529 ~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 529 TGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp TSCBCHHHHHHHHHSCC---
T ss_pred cchhHHHHHHHHHhhhhhcC
Confidence 99999999999999988875
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-80 Score=693.04 Aligned_cols=495 Identities=22% Similarity=0.325 Sum_probs=410.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|+.++|+++++++|+++|+++. + ..+++||+||.++++++|++|+++|+++||+|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~-----------~----------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 71 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP-----------S----------TDVRMTYAQMNALANRCADVLTALGIAKGDRV 71 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG-----------G----------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC-----------C----------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 45689999999999999999999863 1 11479999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+..+....+....++.+.
T Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----- 146 (517)
T 3r44_A 72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI----- 146 (517)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-----
T ss_pred EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-----
Confidence 999999999999999999999999999999999999999999999999999988777766554433222111100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCc
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
...++.+...... ...+.....++|+++|+|||||||.||||++||+++.+.+......+ ++.++|
T Consensus 147 ------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 212 (517)
T 3r44_A 147 ------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRD 212 (517)
T ss_dssp ------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTC
T ss_pred ------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCC
Confidence 0112333333222 12223456789999999999999999999999999999999998888 999999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHH
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 395 (721)
++++.+|++|++++...+.+++.|+++++.+ +..+.+ .+.++++|++.++|++++.+.+...
T Consensus 213 ~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~---- 277 (517)
T 3r44_A 213 RLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWS-----------LIVEERVCIGGAVPAILNFMRQVPE---- 277 (517)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHH-----------HHHHTTCCEEEECHHHHHHHHHSHH----
T ss_pred EEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHH-----------HHHHhCCeEEEeHHHHHHHHHhCcc----
Confidence 9999999999999988666666999998843 333333 3899999999999999999876321
Q ss_pred hhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceec
Q 004961 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (721)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~ 475 (721)
......+++|.+++||+++++++.+.+... +++++|
T Consensus 278 -------------------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~ 313 (517)
T 3r44_A 278 -------------------------------------------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQ 313 (517)
T ss_dssp -------------------------------------------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEE
T ss_pred -------------------------------------------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEE
Confidence 111233689999999999999999999886 999999
Q ss_pred ccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004961 476 AYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
.||+||+++.++..... ....+++|+|+++++++|+| +++..++ .| .|||+|+|++++.|||++|+.|+++|
T Consensus 314 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f- 387 (517)
T 3r44_A 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF- 387 (517)
T ss_dssp EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE-
T ss_pred eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh-
Confidence 99999998876654433 34568999999999999999 5665443 55 79999999999999999999999999
Q ss_pred cCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcC
Q 004961 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPS 630 (721)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~ 630 (721)
.+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+|+..
T Consensus 388 --~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~ 462 (517)
T 3r44_A 388 --DN--GWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD 462 (517)
T ss_dssp --ET--TEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred --cC--CCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC
Confidence 66 89999999999999999999999999997 59999999999999999999999999987653 466777433
Q ss_pred hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
... .+ .++|+++++ ++||.||+|+.|++++++ | +|++|||+|++|++
T Consensus 463 ~~~---------~~-----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~ 509 (517)
T 3r44_A 463 QNE---------VS-----------------EQQIVEYCG-TRLARYKLPKKVIFAEAI--P----RNPTGKILKTVLRE 509 (517)
T ss_dssp TTT---------CC-----------------HHHHHHHHH-HHSCGGGSCSEEEECSCC--C----BCTTCCBCHHHHHH
T ss_pred CCC---------CC-----------------HHHHHHHHH-HhCCCCCCCCEEEEECCC--C----CCCCcCccHHHHHH
Confidence 211 00 267888888 899999999999999998 6 99999999999999
Q ss_pred HHHHHH
Q 004961 711 KFKDDL 716 (721)
Q Consensus 711 ~~~~~i 716 (721)
+|.+.+
T Consensus 510 ~~~~~~ 515 (517)
T 3r44_A 510 QYSATV 515 (517)
T ss_dssp HHGGGC
T ss_pred HHHhhc
Confidence 998764
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-80 Score=699.02 Aligned_cols=505 Identities=23% Similarity=0.313 Sum_probs=384.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3689999999999999999998531 1 12257999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++++..+.+......++.++.++.++.....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999998887777777777777777776543210
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHH--HhhCCCCCCCc
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD 318 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d 318 (721)
...+++++...... .....++|+++|+|||||||.||||++||+++++..... ...+ .++++|
T Consensus 156 ----------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d 220 (541)
T 1v25_A 156 ----------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKD 220 (541)
T ss_dssp ----------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTC
T ss_pred ----------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCC
Confidence 12356655432211 134567899999999999999999999999998776653 2344 788999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|++++...+.+++.|+++++.+.. .+ +..++..++++++|+++++|+++..|.+.....
T Consensus 221 ~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 288 (541)
T 1v25_A 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LD-----PASLVELFDGEGVTFTAGVPTVWLALADYLEST----- 288 (541)
T ss_dssp EEEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CS-----HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----
T ss_pred EEEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CC-----HHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----
Confidence 999999999999987778889999999985421 11 122233399999999999999999987643211
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
....++||.+++||+++++++.+.+ +.+|++++|.||
T Consensus 289 ------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG 325 (541)
T 1v25_A 289 ------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYG 325 (541)
T ss_dssp ------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEE
T ss_pred ------------------------------------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeeccc
Confidence 0122589999999999999999988 567999999999
Q ss_pred cchhcccccccCCCC-----------CCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcc
Q 004961 479 LTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (721)
Q Consensus 479 ~TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (721)
+||++.+++...... ...+++|+|+|+++++|+| +++..++ .+.++.|||+|+||+++.|||++|+.
T Consensus 326 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred ccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCChhh
Confidence 999987766543321 1247899999999999999 5666543 11236899999999999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEE
Q 004961 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~ 624 (721)
|+++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++
T Consensus 404 t~~~f~--~~--g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 478 (541)
T 1v25_A 404 TRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478 (541)
T ss_dssp HHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred hhhhcc--CC--CCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEE
Confidence 999996 56 89999999999999999999999999997 6999999999999999999999999998765 3688
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHC-CCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA-KLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 625 A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
|+|++..... -.++|+++++ + +||.|++|+.|++++++ | +|++||+
T Consensus 479 a~vv~~~~~~--------------------------~~~~l~~~~~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi 525 (541)
T 1v25_A 479 AVVVPRGEKP--------------------------TPEELNEHLL-KAGFAKWQLPDAYVFAEEI--P----RTSAGKF 525 (541)
T ss_dssp ECC----------------------------------------------CCCTTTSCSBC--------------------
T ss_pred EEEEECCCCC--------------------------CHHHHHHHHH-hccCccccCCcEEEEeCCC--C----CCCccCe
Confidence 9988762110 0256778887 6 89999999999999987 6 9999999
Q ss_pred ChHHHHHHHHHHH
Q 004961 704 KREQLKAKFKDDL 716 (721)
Q Consensus 704 ~R~~l~~~~~~~i 716 (721)
+|++|+++|++.+
T Consensus 526 ~r~~L~~~~~~~~ 538 (541)
T 1v25_A 526 LKRALREQYKNYY 538 (541)
T ss_dssp CCTTHHHHSTTSS
T ss_pred eHHHHHHHHHHhh
Confidence 9999999987654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-80 Score=689.95 Aligned_cols=490 Identities=24% Similarity=0.358 Sum_probs=406.3
Q ss_pred HHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 004961 86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165 (721)
Q Consensus 86 ~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~ 165 (721)
++|++.++++|+++|+..... +|+ ++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 578999999999999985320 333 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccC
Q 004961 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245 (721)
Q Consensus 166 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 245 (721)
++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+......... .++.++....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 133 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------- 133 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence 999999999999999999999999999999999999999999998876655544433322 2333322110
Q ss_pred CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccC
Q 004961 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325 (721)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~p 325 (721)
..+.+.... ...........++|+++|+|||||||.||||++||+++.+.+......+ +++++|++++.+|
T Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p 204 (503)
T 4fuq_A 134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP 204 (503)
T ss_dssp -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence 112222221 1222233456789999999999999999999999999999999998888 9999999999999
Q ss_pred hHHHHHHHH-HHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004961 326 LAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (721)
Q Consensus 326 l~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (721)
++|.+++.. .+.+++.|+++++.+ +..+.+. ++ ++|+++++|+++..+.+...
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~---------- 261 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPR---------- 261 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTT----------
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCC----------
Confidence 999999755 677899999998843 3333333 55 89999999999998865210
Q ss_pred HHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccch
Q 004961 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (721)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE 481 (721)
......+++|.+++||+++++++.+.+.+.+|++++|.||+||
T Consensus 262 -------------------------------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 262 -------------------------------------LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp -------------------------------------CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred -------------------------------------ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 0011225899999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcce
Q 004961 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (721)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw 561 (721)
++..++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++|+.|+++|. .+ ||
T Consensus 305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--~~--g~ 377 (503)
T 4fuq_A 305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKEL---PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR--DD--GF 377 (503)
T ss_dssp TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHTBC--TT--SC
T ss_pred cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCC---cCCCceEEEEECCchhhhhcCChhhhHhhhC--CC--CC
Confidence 99876544444556689999999999999997777654 5889999999999999999999999999996 56 89
Q ss_pred EeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHH
Q 004961 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWA 638 (721)
Q Consensus 562 ~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~ 638 (721)
|+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~----- 451 (503)
T 4fuq_A 378 FITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA----- 451 (503)
T ss_dssp EEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-----
T ss_pred eEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC-----
Confidence 999999999999999999999999998 5999999999999999999999999998765 3588999987642
Q ss_pred HHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 639 HEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
..+ .++++++++ ++||.||+|+.|++++++ | +|++||++|++|+++|++
T Consensus 452 -----~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 452 -----TID---------------EAQVLHGLD-GQLAKFKMPKKVIFVDDL--P----RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp -----CCC---------------HHHHHHHHB-TTBCGGGCCSEEEEESCC--C----BCTTSCBCHHHHHHHTTT
T ss_pred -----CCC---------------HHHHHHHHH-hhcccCCCCCEEEEECCC--C----CCcccceeHHHHHHHHHH
Confidence 111 267888888 999999999999999998 6 999999999999998864
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-80 Score=700.04 Aligned_cols=510 Identities=22% Similarity=0.289 Sum_probs=335.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|.++++++|+++|++... ++. ..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4799999999999999999986321 111 1137999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-- 158 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB--
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc--
Confidence 999999999999999999999999999999999999999999999999999888888888888888888887653211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCC------CCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC--C
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--P 312 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~ 312 (721)
....++.++........ .+.....++|+++|+|||||||.||||++||+++++.+......+ .
T Consensus 159 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~ 229 (550)
T 3rix_A 159 ---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229 (550)
T ss_dssp ---------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSC
T ss_pred ---------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccc
Confidence 12345555554322211 111223468899999999999999999999999999887776542 2
Q ss_pred CCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
.+.++|++++.+|++|++++...+.+++.|+++++.+ +..+.+. ++++++|+++++|+++..+.+.
T Consensus 230 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 298 (550)
T 3rix_A 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKS 298 (550)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHC
T ss_pred cCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhC
Confidence 6789999999999999999988888999999999843 3333333 9999999999999999998752
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.. ......++||.+++||+++++++.+.+.+.+
T Consensus 299 ~~-----------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 299 TL-----------------------------------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp CG-----------------------------------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred cc-----------------------------------------------ccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 11 0011235899999999999999999999988
Q ss_pred CCc-eecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 470 GAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 470 g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
+.. ++|.||+||+++.++.........+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.|||++|+.|
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t 408 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEAT 408 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred CCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhh
Confidence 875 89999999999888777766667799999999999999997666654 58899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A 625 (721)
++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|
T Consensus 409 ~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a 483 (550)
T 3rix_A 409 NALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483 (550)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTCCEEEC-------------------------------------------------
T ss_pred hhhcC--CC--CCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEE
Confidence 99996 56 89999999999999999999999999998 69999999999999999999999999988653 5788
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCcccc-EEEeeCCCCCCCCCccCcccccC
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA-KIKLMPEPWTPEAGLVTAALKIK 704 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~-~i~~~~~~~~p~~~~~t~~gKi~ 704 (721)
+|++.++.. .-.++|+++++ .+|+.|+.|. .|++++++ | +|++|||+
T Consensus 484 ~vv~~~~~~-------------------------~~~~~l~~~~~-~~l~~~~~~~~~i~~v~~l--P----~t~~GKi~ 531 (550)
T 3rix_A 484 VVVLEHGKT-------------------------MTEKEIVDYVA-SQVTTAKKLRGGVVFVDEV--P----KGLTGKLD 531 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCC-------------------------CCHHHHHHHHH-HhcccccccCCceEEEeec--C----CCCCccee
Confidence 888775431 01267888888 8899886554 68899988 6 99999999
Q ss_pred hHHHHHHHHHHHH
Q 004961 705 REQLKAKFKDDLQ 717 (721)
Q Consensus 705 R~~l~~~~~~~i~ 717 (721)
|++|++++.+..+
T Consensus 532 r~~L~~~~~~~~~ 544 (550)
T 3rix_A 532 ARKIREILIKAKK 544 (550)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987654
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-80 Score=694.91 Aligned_cols=503 Identities=19% Similarity=0.239 Sum_probs=332.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
....|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 83 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA 83 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence 4457999999999999999999985 33 379999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEec
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~ 233 (721)
+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+..+....+....++..+
T Consensus 84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
T 3o83_A 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163 (544)
T ss_dssp EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence 9999999999999999999999999999999999999999999999999987653 33444444556666666654
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
.... ...+.++...............++|+++|+|||||||.||||++||+++.+.+......+ +
T Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 3311 123445544433332223456789999999999999999999999999999999998888 9
Q ss_pred CCCCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
+.++|++++++|++|.+++.. ++.++..|+++++.+... +..++..++++++|+++++|+++..+.+...
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 300 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPE--------PLNCFSIIQRHQVNMASLVPSAVIMWLEKAA 300 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCC--------HHHHHHHHHHHTCCEEEECHHHHHHHHHHHT
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCC--------HHHHHHHHHHHCCCEEEechHHHHHHHhchh
Confidence 999999999999999999874 778899999999843321 1112233999999999999999999876432
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
... ...++||.+++||+++++++.+.+.+.+|+
T Consensus 301 ~~~-----------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 333 (544)
T 3o83_A 301 QYK-----------------------------------------------DQIQSLKLLQVGGASFPESLARQVPEVLNC 333 (544)
T ss_dssp TTH-----------------------------------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCS
T ss_pred hcc-----------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCC
Confidence 100 011589999999999999999999998999
Q ss_pred ceecccccchhcccccccCCCC-CCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccc
Q 004961 472 PIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (721)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~ 549 (721)
+++|.||+||++..++...... ...+++|+|+ ++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|+
T Consensus 334 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 409 (544)
T 3o83_A 334 KLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPEHNS 409 (544)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHHHHH
T ss_pred cEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChhhhh
Confidence 9999999999986544332211 1237899996 899999999 666654 588999999999999999999999999
Q ss_pred cccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEE
Q 004961 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVAL 626 (721)
Q Consensus 550 ~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~ 626 (721)
++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++. .++|+
T Consensus 410 ~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~ 484 (544)
T 3o83_A 410 QVFD--ED--NYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484 (544)
T ss_dssp HHBC--TT--CCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------
T ss_pred hhCC--CC--CCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEE
Confidence 9996 56 89999999999999999999999999996 69999999999999999999999999987653 58889
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChH
Q 004961 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.+... ..+++++++++.+||.||+|+.|++++++ | +|++|||+|+
T Consensus 485 vv~~~~~~--------------------------~~~~l~~~~~~~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~ 532 (544)
T 3o83_A 485 IVSRNPEL--------------------------KAVVLRRHLMELGIAQYKLPDQIKLIESL--P----LTAVGKVDKK 532 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCCC--------------------------CHHHHHHHHHhCCCCcccCCcEEEEeccC--C----CCCCCCCcHH
Confidence 88765321 12567788873389999999999999998 6 9999999999
Q ss_pred HHHHHHHHH
Q 004961 707 QLKAKFKDD 715 (721)
Q Consensus 707 ~l~~~~~~~ 715 (721)
+|++++.+.
T Consensus 533 ~L~~~~~~~ 541 (544)
T 3o83_A 533 QLRSILNTS 541 (544)
T ss_dssp ---------
T ss_pred HHHHHHhhc
Confidence 999998753
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-79 Score=701.23 Aligned_cols=526 Identities=17% Similarity=0.218 Sum_probs=423.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
++++++|+++++++||++|+++.. .. .+..+++||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG-----------DD------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC-----------SS------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 578999999999999999998742 10 1233689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhccCC--CceEEE
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI 230 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~ii 230 (721)
++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++... +.+.......+ .++.++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999987642 23444433332 566777
Q ss_pred EecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHH-HHHh
Q 004961 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT 309 (721)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~ 309 (721)
.++...... ... .....+|+++...... ........++|+++|+|||||||.||||++||++++..+. ....
T Consensus 219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 291 (652)
T 1pg4_A 219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291 (652)
T ss_dssp EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence 765432110 000 1123567777654322 1223445689999999999999999999999999987764 4445
Q ss_pred hCCCCCCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
.+ ++.++|++++++|++|+++.. .++.+|+.|+++++.+....... +..++..++++++|+++++|++++.|.+
T Consensus 292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 56 899999999999999999984 47889999999998543211111 2234444999999999999999998875
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
..... .+..++++||.+++||+++++++.+++.+.
T Consensus 367 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 401 (652)
T 1pg4_A 367 EGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKK 401 (652)
T ss_dssp TGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred cCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence 31100 011123689999999999999999999988
Q ss_pred hC---CceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccc
Q 004961 469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY 541 (721)
Q Consensus 469 ~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY 541 (721)
+| ++++|.||+||++..++...+. ..+.+++|+|+||++++|+| ++|..+ +.|+.|||+|+| |+++.||
T Consensus 402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v---~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTCCCEE
T ss_pred hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc---CCCceEEEEEccCCCchhhhh
Confidence 88 8999999999999776655432 34568999999999999999 566654 478899999999 7999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC-
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
|++|+.+.+.|....+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 478 ~~~~e~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 554 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAI 554 (652)
T ss_dssp TTCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred cCCHHHHHhhhhhcCC--CEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence 9999999888753234 89999999999999999999999999998 5999999999999999999999999998754
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++|+|+++++. .. . +++.++|+++++ ++|++|++|+.|++++++ | +|
T Consensus 555 ~g~~l~a~Vv~~~~~----------~~--------~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~T 605 (652)
T 1pg4_A 555 KGQAIYAYVTLNHGE----------EP--------S----PELYAEVRNWVR-KEIGPLATPDVLHWTDSL--P----KT 605 (652)
T ss_dssp TEEEEEEEEEECTTC----------CC--------C----HHHHHHHHHHHH-HHTCGGGCCSEEEECSCC--C----BC
T ss_pred CCeEEEEEEEECCCC----------CC--------C----HHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC--C----CC
Confidence 3699999987642 10 1 123477888888 889999999999999998 6 99
Q ss_pred cccccChHHHHHHHHHHHH
Q 004961 699 AALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~ 717 (721)
++|||+|++|++.+.++++
T Consensus 606 ~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 606 RSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp TTSCBCHHHHHHHHHTC--
T ss_pred CCccchHHHHHHHHhCCCC
Confidence 9999999999999987654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-79 Score=681.86 Aligned_cols=486 Identities=21% Similarity=0.293 Sum_probs=397.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
++|+.++|+++++++||++|+.+.. ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4789999999999999999998520 13 37999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE--CccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+ +....+.+.. ..+.++ ++.
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~------- 128 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-IIF------- 128 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EEE-------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eEE-------
Confidence 999999999999999999999999999999999999999999999999 6665444311 112222 222
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCC----CCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCC
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (721)
++++..... ..........++|+|+|+|||||||.||||++||+++.+.+......+ ++
T Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 129 ----------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp ----------------GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred ----------------ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 222211100 111112345689999999999999999999999999999988887777 77
Q ss_pred --CCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 315 --~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
+++|++++.+|++|++++. .++.+++.|+++++.+ +..+.+ .++++++|+++++|++++.+.+
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ-----------LVQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHH-----------HHHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHH-----------HHHHhCCeEEEeChHHHHHHHh
Confidence 8899999999999999985 4788899999999844 333333 3899999999999999999876
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
...... .....++||.+++||+++++++.+.+++.
T Consensus 261 ~~~~~~---------------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAG---------------------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTT---------------------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcccc---------------------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 321000 00112589999999999999999999999
Q ss_pred hCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEc-cccccccccCCCcc
Q 004961 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK 547 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~~~~ 547 (721)
++++++|.||+||++.. .... ....+++|+|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~~-~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMNS-LYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEEE-EEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeecccccccc-cccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 89999999999999432 2221 34568999999999999999 44422223568999999999 99999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEE
Q 004961 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~ 624 (721)
|++.| .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++
T Consensus 372 t~~~f---~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~ 445 (504)
T 1t5h_X 372 TAEKL---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVT 445 (504)
T ss_dssp HHHHE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEE
T ss_pred hhhhh---cC--CccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEE
Confidence 99999 66 89999999999999999999999999997 6999999999999999999999999998765 4699
Q ss_pred EEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHC-CCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA-KLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 625 A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
|+|++.++. +.+ .++|+++++ . +||.||+|+.|++++++ | +|++|||
T Consensus 446 a~vv~~~~~----------~~~---------------~~~l~~~~~-~~~L~~~~~P~~i~~v~~l--P----~t~~GKi 493 (504)
T 1t5h_X 446 ACVVPRLGE----------TLS---------------ADALDTFCR-SSELADFKRPKRYFILDQL--P----KNALNKV 493 (504)
T ss_dssp EEEEECTTC----------CCC---------------HHHHHHHHH-TSSCCGGGSCSEEEECSCC--C----BCTTSCB
T ss_pred EEEEecCCc----------CcC---------------HHHHHHHHh-hccCcccccceEEEEhhhC--C----CCCCCCE
Confidence 999987542 000 267888998 6 99999999999999997 6 9999999
Q ss_pred ChHHHHHHHH
Q 004961 704 KREQLKAKFK 713 (721)
Q Consensus 704 ~R~~l~~~~~ 713 (721)
+|++|+++|+
T Consensus 494 ~r~~L~~~~~ 503 (504)
T 1t5h_X 494 LRRQLVQQVS 503 (504)
T ss_dssp CHHHHHHHHC
T ss_pred eHHHHHHHhc
Confidence 9999998874
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-78 Score=687.32 Aligned_cols=510 Identities=18% Similarity=0.253 Sum_probs=420.7
Q ss_pred CCCHHHHHHHHHHh-----CCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCC
Q 004961 81 ASTMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNV 154 (721)
Q Consensus 81 ~~tl~~~~~~~a~~-----~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~ 154 (721)
.+++.++|++++++ +||++|+++. ++. +..+++||+||.++++++|++|++. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 35678999999999 9999999874 211 1235799999999999999999999 9999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecC
Q 004961 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (721)
Q Consensus 155 gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 234 (721)
||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++++..+.+..+...++.++.++.++.
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999888877777777788777777654
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHH--HHHHHHhhCC
Q 004961 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA--TAAAIKTLIP 312 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~ 312 (721)
.... ....++++....... .......++|+++|+|||||||.||||++||+ ++. ..... ..+
T Consensus 179 ~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~- 242 (570)
T 3c5e_A 179 KSCD------------GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT- 242 (570)
T ss_dssp SCCT------------TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-
T ss_pred cCcc------------ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-
Confidence 2110 124566665543221 12244578999999999999999999999999 444 33333 455
Q ss_pred CCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
++.++|++++.+|++|++++.. ++.++..|+++++.+...+ + +..++..++++++|+++++|++++.+.+..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~- 315 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKF-D-----PLVILKTLSSYPIKSMMGAPIVYRMLLQQD- 315 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSC-C-----HHHHHHHHHHSCCCEEEECHHHHHHHHTSC-
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCC-C-----HHHHHHHHHHhCCeEEeccHHHHHHHHhcc-
Confidence 8899999999999999999874 7788999999998432111 1 122333399999999999999999886520
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
. .....++||.+++||+++++++.+.+.+.+|+
T Consensus 316 --~---------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 316 --L---------------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp --T---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred --c---------------------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 0 00112589999999999999999999988899
Q ss_pred ceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEc-----cccccccccCCCc
Q 004961 472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYFNNPG 546 (721)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-----g~~v~~gY~~~~~ 546 (721)
+++|.||+||++..++.........+++|+|+|+++++|+| +++..+ ++|+.|||+|+ |++++.|||++|+
T Consensus 349 ~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~~~~~ 424 (570)
T 3c5e_A 349 DIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYVDNPD 424 (570)
T ss_dssp CCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEETTCHH
T ss_pred chhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhccccCChh
Confidence 99999999999977665544455678999999999999999 566654 58899999999 9999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~ 623 (721)
.|++.| .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.+
T Consensus 425 ~t~~~f---~~--~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~ 498 (570)
T 3c5e_A 425 KTAANI---RG--DFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498 (570)
T ss_dssp HHHHTE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred Hhhhhh---cC--CccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEE
Confidence 999999 56 89999999999999999999999999997 6999999999999999999999999998765 358
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+|+|++.++... . . .+.+.++|+++++ ++||.|++|+.|++++++ | +|++||+
T Consensus 499 ~a~vv~~~~~~~--------~---------~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi 551 (570)
T 3c5e_A 499 KAFVVLASQFLS--------H---------D---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL--P----KTVTGKI 551 (570)
T ss_dssp EEEEEECGGGTT--------S---------C---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC--C----BCTTCCB
T ss_pred EEEEEECCcccC--------c---------c---hHHHHHHHHHHHH-hhCccccCCcEEEEeccC--C----CCCCcCC
Confidence 899998764300 0 0 1233578888888 899999999999999987 6 9999999
Q ss_pred ChHHHHHHHHHH
Q 004961 704 KREQLKAKFKDD 715 (721)
Q Consensus 704 ~R~~l~~~~~~~ 715 (721)
+|++|++++.+.
T Consensus 552 ~R~~L~~~~~~~ 563 (570)
T 3c5e_A 552 QRAKLRDKEWKM 563 (570)
T ss_dssp CHHHHHHHHTC-
T ss_pred cHHHHHHHHHhh
Confidence 999999987543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-79 Score=690.42 Aligned_cols=510 Identities=21% Similarity=0.254 Sum_probs=406.5
Q ss_pred ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcE
Q 004961 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (721)
Q Consensus 50 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (721)
+..++.+.+.+++.....++ ....+++...|+.++|+++++++||++|+++ ++ +
T Consensus 10 ~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~-----------~ 63 (563)
T 1amu_A 10 IHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------EN-----------E 63 (563)
T ss_dssp -------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TT-----------E
T ss_pred ccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CC-----------c
Confidence 56666777777766654333 2334455568999999999999999999985 33 3
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEC
Q 004961 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (721)
Q Consensus 130 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (721)
++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~ 143 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 143 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 004961 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (721)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 289 (721)
......+..+ .....+..++.... .. ...........++|+++|+|||||||.
T Consensus 144 ~~~~~~~~~~----~~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~ 196 (563)
T 1amu_A 144 KHLVHLIHNI----QFNGQVEIFEEDTI---------------------KI--REGTNLHVPSKSTDLAYVIYTSGTTGN 196 (563)
T ss_dssp GGGHHHHTTS----CCCSEEEECCCSTT---------------------TT--SCCSCCCCCCCTTSEEEEEEEC-----
T ss_pred Cchhhhhhhc----cccCceeeecchhh---------------------cc--ccCccCCCCCCCCCeEEEEECCCCCCC
Confidence 8765443322 11112222221100 00 001111234567899999999999999
Q ss_pred cceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccce
Q 004961 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369 (721)
Q Consensus 290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (721)
||||++||+|+.+.+......+ ++.++|++++++|++|++++..++.+|+.|+++++.+.....+. ..+...++
T Consensus 197 PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~i~ 270 (563)
T 1amu_A 197 PKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF-----VKFEQYIN 270 (563)
T ss_dssp CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----HHHHHHHH
T ss_pred CcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----HHHHHHHH
Confidence 9999999999999988888887 89999999999999999999888889999999998543322221 12233389
Q ss_pred eecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEE
Q 004961 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449 (721)
Q Consensus 370 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 449 (721)
++++|+++++|+++..+... ..+++|.
T Consensus 271 ~~~~t~~~~~P~~~~~l~~~-----------------------------------------------------~~~~lr~ 297 (563)
T 1amu_A 271 QKEITVITLPPTYVVHLDPE-----------------------------------------------------RILSIQT 297 (563)
T ss_dssp HTTCCEEEECHHHHTTSCTT-----------------------------------------------------TCCSCSE
T ss_pred HcCCcEEEeCHHHHHHHHhc-----------------------------------------------------ccccccE
Confidence 99999999999998766321 0148999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCC---CCCCccCCCcCcceEEEEecCCCCcccCCCCCC
Q 004961 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526 (721)
Q Consensus 450 v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~ 526 (721)
+++||+++++++.+.+.+. ++++|+||+||++.+++...... ...+++|+|+|+++++|+| +++..+ ++|+
T Consensus 298 ~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~ 371 (563)
T 1amu_A 298 LITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGE 371 (563)
T ss_dssp EEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTC
T ss_pred EEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCC
Confidence 9999999999999988764 78999999999987766543322 2457899999999999999 666654 5889
Q ss_pred cceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHh
Q 004961 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604 (721)
Q Consensus 527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~ 604 (721)
.|||+|+|++++.|||++|+.|+++|..++ +|++||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.
T Consensus 372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~ 450 (563)
T 1amu_A 372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILL 450 (563)
T ss_dssp EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHT
T ss_pred cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHH
Confidence 999999999999999999999999996321 34589999999999999999999999999998 699999999999999
Q ss_pred cCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCcccc
Q 004961 605 SSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPA 681 (721)
Q Consensus 605 ~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~ 681 (721)
+||+|.+|+|++.+++ +.++|+|++.... + .++|+++++ ++||.||+|+
T Consensus 451 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~----------~-----------------~~~l~~~l~-~~L~~y~~P~ 502 (563)
T 1amu_A 451 KHMYISETAVSVHKDHQEQPYLCAYFVSEKHI----------P-----------------LEQLRQFSS-EELPTYMIPS 502 (563)
T ss_dssp TSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------C-----------------HHHHHHHHH-HHSCGGGSCS
T ss_pred hCCCcceEEEEEeecCCCCeEEEEEEEeCCCC----------C-----------------HHHHHHHHH-hhCchhhCCc
Confidence 9999999999998764 3689999876321 0 267888888 8999999999
Q ss_pred EEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 682 KIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 682 ~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
.|++++++ | +|++|||+|++|++.+
T Consensus 503 ~i~~v~~l--P----~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 503 YFIQLDKM--P----LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEECSSC--C----BCTTSSBCGGGSCCCC
T ss_pred EEEEeccc--C----CCCCcChhHHhcCCcc
Confidence 99999998 6 9999999999998643
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-78 Score=696.23 Aligned_cols=535 Identities=16% Similarity=0.186 Sum_probs=422.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~Vai 160 (721)
++++++|+++++++||++|+++.. .. .+..+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i 144 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 144 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred cHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 689999999999999999999742 10 123368999999999999999999 999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhhccCCCceEEEE
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIY 231 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~ 231 (721)
+++|++|+++++|||+++|++++|+++.++.+++.++|++++++++|+++... +.+.+....++.++++++
T Consensus 145 ~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 224 (663)
T 1ry2_A 145 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 224 (663)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred EcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999987643 344555566677788887
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH-HHhh
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~ 310 (721)
++...... ... ......+|+++...... ..+.....++|+++|+|||||||.||||++||++++..+.. ....
T Consensus 225 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 225 YRKTNNPS----VAF-HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp ECSSCCSS----CCC-CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EecCCCCc----ccc-CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 76432100 000 01123567777653321 12234457899999999999999999999999998877644 4455
Q ss_pred CCCCCCCcEEEeccChHHHHHHH-HHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ ++.++|++++++|++|+++.. .++.+|+.|+++++.+....... +..++..|+++++|+++++|++++.|.+.
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 373 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA 373 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence 6 899999999999999999984 47889999999998443211111 22344449999999999999999988642
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... .+...+++||.+++||+++++++.+++.+.+
T Consensus 374 ~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 374 GDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp CTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred Cccc---------------------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence 1000 0011236899999999999999999999988
Q ss_pred C---CceecccccchhcccccccCC---CCCCCCccCCCcCcceEEEEecCCCCcccCCCC-CCcceEEEcc--cccccc
Q 004961 470 G---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTAG 540 (721)
Q Consensus 470 g---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~-g~~GEl~v~g--~~v~~g 540 (721)
| +++++.||+||++..++...+ ...+.+++|+|+||++++|+|+++|..++ + |+.|||+|+| |+++.|
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~---~~g~~Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN---TSHAEGVLAVKAAWPSFART 485 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE---CSSCEEEEEESSCCTTSCCE
T ss_pred CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC---CCCcceEEEEecCCCchhcc
Confidence 8 899999999999876665433 23456899999999999999954776654 4 7899999999 589999
Q ss_pred ccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC
Q 004961 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620 (721)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~ 620 (721)
||++|+.|.+.|....+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 486 y~~~~~~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562 (663)
T ss_dssp ETTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred cccChHHHHHhhhcCCC--CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecC
Confidence 99999999998853235 89999999999999999999999999998 5999999999999999999999999998865
Q ss_pred ---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCcc
Q 004961 621 ---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLV 697 (721)
Q Consensus 621 ---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~ 697 (721)
+.++|+|+++++.... ... .+..+++.++|+++++ ++|++|++|+.|++++++ | +
T Consensus 563 ~~g~~~~a~Vv~~~~~~~~-----~~~----------~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~ 620 (663)
T 1ry2_A 563 LTGQAVAAFVVLKNKSSWS-----TAT----------DDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL--P----K 620 (663)
T ss_dssp TTSCCCEEEEEEC---------------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC--C----B
T ss_pred CCCeEEEEEEEEcCCCccc-----ccc----------chhHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC--C----C
Confidence 4699999988653100 000 0000123578888888 889999999999999998 6 9
Q ss_pred CcccccChHHHHHHHHHHHH
Q 004961 698 TAALKIKREQLKAKFKDDLQ 717 (721)
Q Consensus 698 t~~gKi~R~~l~~~~~~~i~ 717 (721)
|++|||+|++|++.+.++++
T Consensus 621 T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 621 TRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp CTTSCBCHHHHHHSCC----
T ss_pred CCccCchHHHHHHHHcCCCC
Confidence 99999999999999877644
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-79 Score=682.98 Aligned_cols=490 Identities=22% Similarity=0.307 Sum_probs=324.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DG-----------VRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CC-----------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47999999999999999999986 33 37999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.++....
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--- 138 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS---
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc---
Confidence 99999999999999999999999999999999999999999999999999888776666677777887777654211
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.+.++...............++|+++|+|||||||.||||++||+++++.+.+....+ +++++|++
T Consensus 139 -------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 204 (509)
T 3ivr_A 139 -------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVN 204 (509)
T ss_dssp -------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEE
T ss_pred -------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEE
Confidence 1111111111222233556789999999999999999999999999999999998888 99999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++.+|++|++++...+.++..|++.++. ++..+.+. ++++++|+++++|+++..+++...
T Consensus 205 l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~------ 267 (509)
T 3ivr_A 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAA------ 267 (509)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCC------
T ss_pred EEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhccc------
Confidence 9999999999998877766666655553 33333333 999999999999999999876320
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecc
Q 004961 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA 476 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~ 476 (721)
....+++|.++.||++ ++.+.+...+ +++++|.
T Consensus 268 -------------------------------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 268 -------------------------------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp -------------------------------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred -------------------------------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 0012489999999998 7777777776 8999999
Q ss_pred cccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
||+||++++++.....+ ...++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++.| .
T Consensus 302 YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~ 373 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRP---LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF---R 373 (509)
T ss_dssp EEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCEETTCHHHHHHHT---G
T ss_pred cCccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEecCCccccccCCHHHhHHHh---h
Confidence 99999998776654432 235699999999999999 55655 4588999999999999999999999999999 5
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecC--CCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcCh
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRK--KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~--~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~ 631 (721)
+ |||+|||+|++|+||+|+|+||+ ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++.+
T Consensus 374 ~--g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 450 (509)
T 3ivr_A 374 N--GWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450 (509)
T ss_dssp G--GSEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred c--CCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCC
Confidence 6 89999999999999999999999 999997 69999999999999999999999999988654 4888888775
Q ss_pred HHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+... ..++|+++++ ++||.|++|+.|++++++ | +|++|||+|++|+++
T Consensus 451 ~~~~-------------------------~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKidr~~Lr~~ 498 (509)
T 3ivr_A 451 GESI-------------------------AADALAEFVA-SLIARYKKPKHVVFVEAL--P----KDAKGAIDRAAVKTA 498 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCC-------------------------CHHHHHHHHH-hhCcccCCCcEEEEecCC--C----CCCCCCccHHHHHHH
Confidence 4310 1267888888 899999999999999988 6 999999999999999
Q ss_pred HHHHH
Q 004961 712 FKDDL 716 (721)
Q Consensus 712 ~~~~i 716 (721)
+++.-
T Consensus 499 ~~~~~ 503 (509)
T 3ivr_A 499 HGQEG 503 (509)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 88653
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=670.77 Aligned_cols=494 Identities=20% Similarity=0.229 Sum_probs=410.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~Vai 160 (721)
+|+.++|+++|+++|+++|+++ ++ +++||+||.++++++|++|.+. |.++|++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i 57 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS------------QG-----------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILV 57 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEc------------CC-----------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 4799999999999999999985 33 3799999999999999999885 8899999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++...... ..
T Consensus 58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~----------------- 114 (511)
T 3e7w_A 58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV----------------- 114 (511)
T ss_dssp EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC-----------------
T ss_pred EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc-----------------
Confidence 9999999999999999999999999999999999999999999999997543210 00
Q ss_pred CCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
.......+++++...............++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus 115 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 187 (511)
T 3e7w_A 115 ------GQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIF 187 (511)
T ss_dssp ------CCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEE
T ss_pred ------ccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceE
Confidence 01133456666655433333233446789999999999999999999999999999999988888 89999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++++|++|++++..++.++..|+++++.+.....+. ..++..++++++|++.++|++++.+.....
T Consensus 188 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 253 (511)
T 3e7w_A 188 LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKP-----KVLFEELKKSGLNVWTSTPSFVQMCLMDPG--------- 253 (511)
T ss_dssp EECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCSEEEECHHHHHHHHTSTT---------
T ss_pred EEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhccc---------
Confidence 999999999999888899999999988543221121 122333999999999999999998764210
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceeccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL 479 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~ 479 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|.||+
T Consensus 254 --------------------------------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 254 --------------------------------------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp --------------------------------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred --------------------------------------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 0011235899999999999999999998887 8999999999
Q ss_pred chhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004961 480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
||++..++..... .....++|+|+|+++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++.|..
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred chheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 9998776644321 23457899999999999999 566654 58899999999999999999999999999953
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcCh
Q 004961 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~ 631 (721)
.+|.+||+|||+|++ +||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 372 -~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 448 (511)
T 3e7w_A 372 -HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEE 448 (511)
T ss_dssp -SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECC
T ss_pred -CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecc
Confidence 233358999999999 59999999999999998 6999999999999999999999999997655 36899999876
Q ss_pred HHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+.. .+ ...+.++|+++++ ++||.|++|+.+++++++ | +|++|||+|++|++.
T Consensus 449 ~~~----------~~-----------~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~l--P----~t~~GKi~R~~L~~~ 500 (511)
T 3e7w_A 449 HEF----------EK-----------EFQLTSAIKKELA-ASLPAYMIPRKFIYQDHI--Q----MTANGKIDRKRIGEE 500 (511)
T ss_dssp CCC----------SS-----------HHHHHHHHHHHHH-HHSCGGGSCSEEEECSCC--C----BCTTSCBCHHHHHHH
T ss_pred ccc----------cc-----------hhhHHHHHHHHHH-hhCchhhCCeeEEEeccC--C----CCCCcCccHHHHHhH
Confidence 421 00 1234577888888 899999999999999998 6 999999999999999
Q ss_pred HHHH
Q 004961 712 FKDD 715 (721)
Q Consensus 712 ~~~~ 715 (721)
+++.
T Consensus 501 ~~~~ 504 (511)
T 3e7w_A 501 VLVR 504 (511)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-77 Score=672.42 Aligned_cols=495 Identities=20% Similarity=0.242 Sum_probs=402.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
+|+.++|+++++++||++|+++ ++ +++||+||.++++++|++|.+.|+++||+|+|+
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~ 57 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW------------RD-----------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVY 57 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEe------------CC-----------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4799999999999999999986 33 369999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (721)
++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++...... ..+ . .++.
T Consensus 58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~-~~~~---------- 119 (512)
T 3fce_A 58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-V-RIVS---------- 119 (512)
T ss_dssp ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-S-EEEE----------
T ss_pred eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-c-ceec----------
Confidence 999999999999999999999999999999999999999999999998543210 000 0 0100
Q ss_pred CccCCCCCceEeeHHHHHhcCC-CCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEE
Q 004961 242 GVSGGISNWTVSSFSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (721)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (721)
...+.++..... ..+.......++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus 120 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~ 188 (512)
T 3fce_A 120 ----------EDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVF 188 (512)
T ss_dssp ----------THHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEE
T ss_pred ----------hhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEE
Confidence 011222221111 112223456789999999999999999999999999999999988888 99999999
Q ss_pred EeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004961 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (721)
Q Consensus 321 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (721)
++++|++|++++..++.+++.|+++++.+.....+. ..++..++++++|++.++|++++.++....
T Consensus 189 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 254 (512)
T 3fce_A 189 LNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEAS--------- 254 (512)
T ss_dssp EECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTT---------
T ss_pred EEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhcc---------
Confidence 999999999999888899999999998544222221 122333899999999999999988754210
Q ss_pred hHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceeccccc
Q 004961 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL 479 (721)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~ 479 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|.||+
T Consensus 255 --------------------------------------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 296 (512)
T 3fce_A 255 --------------------------------------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296 (512)
T ss_dssp --------------------------------------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred --------------------------------------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCccc
Confidence 0011235899999999999999999998887 8999999999
Q ss_pred chhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccccccc
Q 004961 480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (721)
Q Consensus 480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (721)
||++..++..... .....++|+|+++++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++.|..
T Consensus 297 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 372 (512)
T 3fce_A 297 TEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIA---PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTM 372 (512)
T ss_dssp GGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBC---CTTSCEEEEEESTTSCSCBTTCHHHHHHHEEE
T ss_pred ChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCC---CCCCeEEEEEeccccChhhcCCchhhhhcccc
Confidence 9999876654332 22457899999999999999 666654 48899999999999999999999999999842
Q ss_pred CCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcCh
Q 004961 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (721)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~ 631 (721)
.+++|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++|+|++.+
T Consensus 373 -~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 449 (512)
T 3fce_A 373 -IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGE 449 (512)
T ss_dssp -ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred -CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCC
Confidence 234489999999999 79999999999999998 69999999999999999999999999876553 5899999875
Q ss_pred HHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHH
Q 004961 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 711 (721)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~ 711 (721)
+.. .+ ...+.++|+++++ ++||.|++|+.+++++++ | +|++|||+|++|++.
T Consensus 450 ~~~----------~~-----------~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~l--P----~t~~GKi~R~~L~~~ 501 (512)
T 3fce_A 450 HSF----------EK-----------EFKLTSAIKKELN-ERLPNYMIPRKFMYQSSI--P----MTPNGKVDRKKLLSE 501 (512)
T ss_dssp CCC----------SS-----------HHHHHHHHHHHHH-TTSCGGGSCSEEEECSCC--C----BCTTSSBCHHHHHHH
T ss_pred ccc----------cc-----------hhhhHHHHHHHHH-hhCchhcCCeEEEEeccc--C----CCCCcChHHHHHHhh
Confidence 320 00 0223467889998 999999999999999998 6 999999999999999
Q ss_pred HHHH
Q 004961 712 FKDD 715 (721)
Q Consensus 712 ~~~~ 715 (721)
++++
T Consensus 502 ~~~~ 505 (512)
T 3fce_A 502 VTAL 505 (512)
T ss_dssp HHC-
T ss_pred hhhc
Confidence 8764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-77 Score=680.27 Aligned_cols=504 Identities=17% Similarity=0.234 Sum_probs=415.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004961 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (721)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 157 (721)
++...|++++|+++++ ||++|+++ ++ +++||+||.++++++|++|++.|+++||+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 77 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGET 77 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3455899999999988 99999985 33 37999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch-----hHHHhhhccCCCceEEEEe
Q 004961 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYF 232 (721)
Q Consensus 158 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 232 (721)
|+|+++|++++++++|||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...
T Consensus 78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (617)
T 3rg2_A 78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157 (617)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999987654 3334444455666666655
Q ss_pred cCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCC
Q 004961 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 312 (721)
+.... ..+.+....... ........++|+|+|+|||||||.||||+++|+++++.+......+
T Consensus 158 ~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~- 220 (617)
T 3rg2_A 158 NDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220 (617)
T ss_dssp TCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-
T ss_pred ccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-
Confidence 43221 123333332221 2223455689999999999999999999999999999999988888
Q ss_pred CCCCCcEEEeccChHHHHHHHH--HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 313 NPGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
++.++|++++++|++|.+++.. ++.+++.|+++++.+.... ..+...++++++|++.++|+++..+.+..
T Consensus 221 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSA--------TLCFPLIEKHQVNVTALVPPAVSLWLQAL 292 (617)
T ss_dssp TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCH--------HHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCH--------HHHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence 8999999999999999999864 7888999999998543211 11222389999999999999999987643
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
..... ....++||.+++||+++++++.+.+...+|
T Consensus 293 ~~~~~---------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 327 (617)
T 3rg2_A 293 IEGES---------------------------------------------RAQLASLKLLQVGGARLSATLAARIPAEIG 327 (617)
T ss_dssp HTTCC---------------------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred hcccc---------------------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhC
Confidence 21100 001258999999999999999999999899
Q ss_pred CceecccccchhcccccccCCCC-CCCCccCCCc-CcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccc
Q 004961 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (721)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (721)
++++|.||+||++..++...... ....++|+|+ ++++++|+| +++.. +++|+.|||+|+|+++++||+|+|+.|
T Consensus 328 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~t 403 (617)
T 3rg2_A 328 CQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHN 403 (617)
T ss_dssp SEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECSSSCSCCTTCHHHH
T ss_pred CcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCC---CCCCCceEEEecCccccchhcCChhhh
Confidence 99999999999986654332211 1236889997 788999999 66665 458899999999999999999999999
Q ss_pred ccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEE
Q 004961 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (721)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A 625 (721)
+++|. .+ +||+|||+|++++||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|
T Consensus 404 ~~~f~--~~--~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 478 (617)
T 3rg2_A 404 ASAFD--AN--GFYCSGDLISIDPEGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCA 478 (617)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhccC--CC--CceecCceEEEcCCceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEE
Confidence 99997 66 89999999999999999999999999998 5999999999999999999999999987654 46889
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|++.+.. + ..++++++++.+||.||+|+.+++++++ | +|++|||||
T Consensus 479 ~vv~~~~~----------~-----------------~~~l~~~l~~~~lp~~~vP~~~~~v~~l--P----~t~~GKidR 525 (617)
T 3rg2_A 479 YLVVKEPL----------R-----------------AVQVRRFLREQGIAEFKLPDRVECVDSL--P----LTAVGKVDK 525 (617)
T ss_dssp EEEESSCC----------C-----------------HHHHHHHHHTTTCCGGGSCSEEEECSCC--C----BCTTSSBCH
T ss_pred EEEeCCCC----------C-----------------HHHHHHHHHhCCCccccCCcEEEEeccc--C----CCCCCCCcH
Confidence 98876521 0 2578888883379999999999999998 6 999999999
Q ss_pred HHHHHHHHHHHHh
Q 004961 706 EQLKAKFKDDLQM 718 (721)
Q Consensus 706 ~~l~~~~~~~i~~ 718 (721)
++|++.+.+....
T Consensus 526 ~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 526 KQLRQWLASRASA 538 (617)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccc
Confidence 9999998876543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-78 Score=687.82 Aligned_cols=485 Identities=22% Similarity=0.259 Sum_probs=313.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...|++++|+++++++||++|+++ ++ +.+||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH------------EA-----------DELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC------------CC-----------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++...... ++....++..+...
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~-- 199 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA-- 199 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc--
Confidence 999999999999999999999999999999999999999999999999999765332 22222222211100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCc
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
.............++|+++|+|||||||.||||++||+++.+.+.. ...+ .++++|
T Consensus 200 ----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 255 (570)
T 4gr5_A 200 ----------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE 255 (570)
T ss_dssp --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred ----------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence 0001111224457899999999999999999999999999876554 3344 788999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++++|++|..+...++.+++.|+++++.+.... + +..+...++++++|++.++|++++.+.+....
T Consensus 256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------ 323 (570)
T 4gr5_A 256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------ 323 (570)
T ss_dssp EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence 99999999998777778889999999988543211 1 12233349999999999999999998753110
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceeccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~Y 477 (721)
..++||.+++||+++++++.+.+.+.+ +++++|+|
T Consensus 324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 125899999999999999887777665 89999999
Q ss_pred ccchhcccccccCCC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004961 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
|+||++++++..... .....++|+|+|+++++|+| +++..+ ++|+.|||+|+|++++.|||++|+.|+++|.
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTAERFV 435 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence 999998876654321 22346799999999999999 666654 5899999999999999999999999999996
Q ss_pred cC----CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEE
Q 004961 554 VD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVAL 626 (721)
Q Consensus 554 ~~----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~ 626 (721)
.+ .++.|||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+
T Consensus 436 ~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~ 514 (570)
T 4gr5_A 436 ADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAY 514 (570)
T ss_dssp ECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------
T ss_pred cCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEE
Confidence 42 134589999999999999999999999999997 6999999999999999999999999998765 358899
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChH
Q 004961 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.+... ....++|+++++ ++|+.|++|+.|++++++ | +|++|||+|+
T Consensus 515 vv~~~~~~------------------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~GKi~R~ 563 (570)
T 4gr5_A 515 VVAERADA------------------------PPDAAELRRHVA-EALPAYMVPVECVPVDEL--P----RTPNGKLDRR 563 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCCC------------------------CcCHHHHHHHHH-hhCccccCCcEEEEcccC--C----CCCCcCcchH
Confidence 88764321 011367888998 899999999999999998 6 9999999999
Q ss_pred HHHHH
Q 004961 707 QLKAK 711 (721)
Q Consensus 707 ~l~~~ 711 (721)
+|++.
T Consensus 564 ~L~~~ 568 (570)
T 4gr5_A 564 ALTGS 568 (570)
T ss_dssp -----
T ss_pred hhhcc
Confidence 99864
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-77 Score=670.26 Aligned_cols=501 Identities=22% Similarity=0.272 Sum_probs=398.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
.+++.++|+++++ +|+++|+++ ++. ++||+||.++++++|++|+++|+++||+|+|
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4569999999999 999999985 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCc-eEEEEecCCCCCc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK 239 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~ 239 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999988777666655444444 455554432110
Q ss_pred cCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHH-HHHHHHHHhhCCCCCCCc
Q 004961 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~d 318 (721)
......++++...... ........++|+++|+|||||||.||||++||+++ .+........+ ++.++|
T Consensus 158 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d 226 (529)
T 2v7b_A 158 ---------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND 226 (529)
T ss_dssp -----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred ---------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence 0112356666543221 12234457899999999999999999999999999 55554444445 788999
Q ss_pred EEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004961 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++++.+|++|.+++.. ++.++..|+++++.+... + +..++..++++++|+++++|+++..+.+... .
T Consensus 227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~ 294 (529)
T 2v7b_A 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERP--T-----ADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L 294 (529)
T ss_dssp EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCC--C-----HHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C
T ss_pred EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCC--C-----HHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c
Confidence 9999999999999876 567899999998753110 1 1122333899999999999999998864210 0
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccc
Q 004961 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~Y 477 (721)
. .....++|.+++||+++++++.+.+.+.+|++++|+|
T Consensus 295 ~------------------------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~Y 332 (529)
T 2v7b_A 295 P------------------------------------------ARADVAIRICTSAGEALPREIGERFTAHFGCEILDGI 332 (529)
T ss_dssp C------------------------------------------CGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEE
T ss_pred c------------------------------------------cccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeE
Confidence 0 0000379999999999999999999998999999999
Q ss_pred ccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 478 G~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
|+||++.+++.........+++|+|+|+++++|+| +++..+ ++|+.|||+|+|++++.|||++|+.|.+.| .+
T Consensus 333 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~ 405 (529)
T 2v7b_A 333 GSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAV---PDGEVGDLYIKGPSAAVMYWNNREKSRATF---LG 405 (529)
T ss_dssp ECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBC---CTTSCEEEEEECTTCCCCBTTCHHHHHHHE---ET
T ss_pred chhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCC---CCCCccEEEEecCCcccccCCChHHHHHhh---hc
Confidence 99999766555544445668999999999999999 666654 588999999999999999999999999999 56
Q ss_pred CcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC--CceEEEEEEcChHHHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALE 635 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~--~~~~~A~vv~~~~~~~ 635 (721)
|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++... ...++|+|++.++.
T Consensus 406 --~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~-- 480 (529)
T 2v7b_A 406 --EWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF-- 480 (529)
T ss_dssp --TEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC--
T ss_pred --CCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC--
Confidence 89999999999999999999999999997 699999999999999999999999999722 23589999987532
Q ss_pred HHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.. . +.+.++|+++++ ++||.|++|+.|++++++ | +|++||++|++|++
T Consensus 481 --------~~--------~----~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 481 --------AP--------S----EILAEELKAFVK-DRLAPHKYPRDIVFVDDL--P----KTATGKIQRFKLRE 528 (529)
T ss_dssp --------CC--------C----HHHHHHHHHHHH-TTSCTTTSCSEEEEESCC--C----BCTTSCBCHHHHHC
T ss_pred --------Cc--------c----hhHHHHHHHHHH-hhcchhhCCeEEEEeccC--C----CCCccchhHHhHhh
Confidence 00 0 112367888998 999999999999999988 6 99999999999986
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-77 Score=681.51 Aligned_cols=480 Identities=17% Similarity=0.157 Sum_probs=384.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
....|++++|+++++++||++|+++ .+ +++||+||.++++++|++|+++|+++||+|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V 80 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 22 369999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|+++||++|.++.+++.++++++++++++++....... .....+
T Consensus 81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~--------- 144 (620)
T 4dg8_A 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV--------- 144 (620)
T ss_dssp EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE---------
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee---------
Confidence 9999999999999999999999999999999999999999999999999765432211 011100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCc
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
.+.... ............++|+|+|+|||||||.||||+++|+++.+.+.. ...+ .+.++|
T Consensus 145 ---------------~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 205 (620)
T 4dg8_A 145 ---------------PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQM 205 (620)
T ss_dssp ---------------EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTC
T ss_pred ---------------eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCC
Confidence 010000 001111123446899999999999999999999999999887665 4455 889999
Q ss_pred EEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
++++.+|++|++++..++.+|+.|+++++.+...+ + +..+...++++++|+++++|++++.+.+...
T Consensus 206 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------- 272 (620)
T 4dg8_A 206 RFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPL-D-----PGVLRQLIGERGADSAWLTASLFNTLVDLDP------- 272 (620)
T ss_dssp EEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSC-C-----HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------
T ss_pred EEEEECccCHHHHHHHHHHHHhcCCEEEeCccccC-C-----HHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------
Confidence 99999999999999989999999999998532211 1 1223334899999999999999998865210
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh-hCCceeccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAY 477 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~-~g~~l~~~Y 477 (721)
...++||.+++||++++++..+.+... ++++++|.|
T Consensus 273 -------------------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 309 (620)
T 4dg8_A 273 -------------------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGY 309 (620)
T ss_dssp -------------------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeE
Confidence 012589999999999998887665554 489999999
Q ss_pred ccchhcccccccCCC----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccc
Q 004961 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (721)
|+||++.+++..... .....++|+|++|++++|+| +++..+ +++|+.|||||+|+++++||||+|+.|+++|.
T Consensus 310 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~ 386 (620)
T 4dg8_A 310 GPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTRASFV 386 (620)
T ss_dssp CCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHHHHEE
T ss_pred chhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhhhhhc
Confidence 999999877654322 23457999999999999999 555442 45789999999999999999999999999997
Q ss_pred cCC-CCc--ceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc--eEEEEEE
Q 004961 554 VDE-RGM--CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVV 628 (721)
Q Consensus 554 ~~~-~g~--gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~--~~~A~vv 628 (721)
.++ +|. +||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++.. .++++++
T Consensus 387 ~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~ 465 (620)
T 4dg8_A 387 ELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT 465 (620)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe
Confidence 322 122 79999999999999999999999999998 59999999999999999999999999876553 4566665
Q ss_pred cChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHH
Q 004961 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 708 (721)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l 708 (721)
...+ .+++.++ ++||.||+|+.+++++++ | +|++|||||++|
T Consensus 466 ~~~~-------------------------------~~~~~l~-~~Lp~y~~P~~~~~v~~l--P----~t~~GKidR~~L 507 (620)
T 4dg8_A 466 GKAD-------------------------------ASPQALL-RQLPTWQRPHACVRVEAL--P----LTAHGKLDRAAL 507 (620)
T ss_dssp ECTT-------------------------------CCCHHHH-HHSCGGGSCSEEEECSSC--C----CC----CCHHHH
T ss_pred cChH-------------------------------HHHHHHH-HhChhhcCCcEEEEECcC--C----CCcccCHhHHHH
Confidence 4421 2223344 679999999999999998 6 999999999999
Q ss_pred HHHHHH
Q 004961 709 KAKFKD 714 (721)
Q Consensus 709 ~~~~~~ 714 (721)
++.|.+
T Consensus 508 ~~~~~~ 513 (620)
T 4dg8_A 508 LRRLEE 513 (620)
T ss_dssp HHHTCS
T ss_pred hhcccc
Confidence 987754
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-77 Score=669.51 Aligned_cols=498 Identities=20% Similarity=0.217 Sum_probs=398.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++|+++|+.+ .++ ++||+||.++++++|++|+++|+++||+|+|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 343 7999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++.+....+ .
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~---------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E---------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------
Confidence 99999999999999999999999999999999999999999999999987643211 0
Q ss_pred CCccCCCCCceEeeHHHHHhcC--CCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhh--CCCCCC
Q 004961 241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR 316 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~ 316 (721)
......+.++.... ...........++|+++|+|||||||.||||++||+++++.+.+.... + .+.+
T Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~ 187 (521)
T 3l8c_A 117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK 187 (521)
T ss_dssp --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence 12233343333211 111122345678999999999999999999999999999988877665 5 7789
Q ss_pred CcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHh
Q 004961 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (721)
Q Consensus 317 ~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 396 (721)
++++++..|++|.+++...+.++..|+++++.+.....+. ..+...+.++++|++.++|+++..+.....
T Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----- 257 (521)
T 3l8c_A 188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDD----- 257 (521)
T ss_dssp SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----
T ss_pred CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----
Confidence 9999999999999998888889999999988544322222 122333889999999999999987754210
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh-CCceec
Q 004961 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (721)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~ 475 (721)
......+++|.+++||+++++++.+.+.+.+ +++++|
T Consensus 258 ------------------------------------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~ 295 (521)
T 3l8c_A 258 ------------------------------------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295 (521)
T ss_dssp ------------------------------------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred ------------------------------------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence 0001225899999999999999998888877 899999
Q ss_pred ccccchhcccccccCCC-----CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004961 476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
.||+||++..++..... ....+++|+|+|+++++|+| +++..+ ++|+.|||+|+||+++.|||++|+.|++
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKEL---SSGEQGEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBC---CTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCC---CCCCceEEEecccccChhhcCCchHhhc
Confidence 99999998876654322 23457899999999999999 666654 5889999999999999999999999999
Q ss_pred ccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC----ceEEEE
Q 004961 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH----NYCVAL 626 (721)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~----~~~~A~ 626 (721)
+|.. .++.|||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++. +.++|+
T Consensus 372 ~f~~-~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~ 449 (521)
T 3l8c_A 372 AFFT-FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAY 449 (521)
T ss_dssp HEEE-ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEE
T ss_pred cCcC-CCCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEE
Confidence 9842 134489999999999999999999999999998 5999999999999999999999999987643 358999
Q ss_pred EEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChH
Q 004961 627 VVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 627 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~ 706 (721)
|++.++... ..+ . ...+.++|+++++ ++||.|++|+.|++++++ | +|++|||||+
T Consensus 450 vv~~~~~~~--------~~~-------~---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l--P----~t~~GKidr~ 504 (521)
T 3l8c_A 450 IVVKDGVKE--------RFD-------R---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL--P----LTPNGKIDIK 504 (521)
T ss_dssp EEECTTSGG--------GCS-------S---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC--C----BCTTSSBCHH
T ss_pred EEecCcccc--------ccc-------c---chhhHHHHHHHHH-hhCccccCCeEEEEeccc--C----CCCCcCccHH
Confidence 998765310 000 0 0123578899998 999999999999999998 6 9999999999
Q ss_pred HHHHHHHHHH
Q 004961 707 QLKAKFKDDL 716 (721)
Q Consensus 707 ~l~~~~~~~i 716 (721)
+|+++++++-
T Consensus 505 ~L~~~~~~~~ 514 (521)
T 3l8c_A 505 TLINEVNNRE 514 (521)
T ss_dssp HHHHHTC---
T ss_pred HHhhhhhcCC
Confidence 9999987653
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-77 Score=719.60 Aligned_cols=519 Identities=23% Similarity=0.303 Sum_probs=336.4
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCC
Q 004961 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (721)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~ 154 (721)
..+.+...|++++|+++++++||++|+++.. +++ ++||+||.++++++|++|+++|+++
T Consensus 54 ~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~ 112 (979)
T 3tsy_A 54 DIYIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQ 112 (979)
T ss_dssp CCCCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445667899999999999999999998631 233 7999999999999999999999999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecC
Q 004961 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (721)
Q Consensus 155 gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 234 (721)
||+|+|+++|+++|++++|||+++|+++||++|.++++++.+++++++++++|++....+.+..+.... .+ .++.++.
T Consensus 113 gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~ 190 (979)
T 3tsy_A 113 NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDD 190 (979)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCC
T ss_pred cCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999988776665554332 22 3444443
Q ss_pred CCCCccCCccCCCCCceEeeHHHHHhcCCC--CCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh---
Q 004961 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT--- 309 (721)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--- 309 (721)
.... +......+++++...... ...+.....++|+++|+|||||||.||||++||+++++.+.....
T Consensus 191 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 262 (979)
T 3tsy_A 191 NESV--------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262 (979)
T ss_dssp CTTS--------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS
T ss_pred cccc--------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc
Confidence 2110 001223455554432221 112234567899999999999999999999999999998877654
Q ss_pred -hCCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHH
Q 004961 310 -LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (721)
Q Consensus 310 -~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 387 (721)
.+ .+.++|++++.+|++|++++.. ++.++..|+++++.+.... ..++..++++++|++.++|+++..+.
T Consensus 263 ~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~ 333 (979)
T 3tsy_A 263 PNL-YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEI--------NLLLELIQRCKVTVAPMVPPIVLAIA 333 (979)
T ss_dssp CSS-CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCH--------HHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred ccc-cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCH--------HHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence 23 6789999999999999999965 6778999999998543221 11233399999999999999999887
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHH
Q 004961 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (721)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~ 467 (721)
+.... .....++||.+++||+++++++.+++.+
T Consensus 334 ~~~~~-----------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~ 366 (979)
T 3tsy_A 334 KSSET-----------------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVNA 366 (979)
T ss_dssp HCGGG-----------------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHHH
T ss_pred hCccc-----------------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHH
Confidence 53110 0112358999999999999999999988
Q ss_pred hh-CCceecccccchhcccccccC-----CCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccc
Q 004961 468 CM-GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541 (721)
Q Consensus 468 ~~-g~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY 541 (721)
.+ +++++|.||+||++.+++... ......+++|+|+|+++++|+|++++..+ ++|+.|||+|+|++++.||
T Consensus 367 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~i~g~~v~~GY 443 (979)
T 3tsy_A 367 KFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL---SRNQPGEICIRGHQIMKGY 443 (979)
T ss_dssp HCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC---CTTCCEEEEEESTTSCSEE
T ss_pred HCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC---CCCCccEEEEECCCccccc
Confidence 87 899999999999997655431 22335689999999999999997667654 4889999999999999999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC-
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
|++|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 444 ~~~p~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~ 518 (979)
T 3tsy_A 444 LNNPAATAETID--KD--GWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518 (979)
T ss_dssp TTCHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEESCC-------------------------------------
T ss_pred cCChhhhhhhcc--CC--CcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccC
Confidence 999999999996 56 89999999999999999999999999998 5999999999999999999999999998765
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++|+|++.++.. ...++|+++++ ++||.|++|+.|++++++ | +|
T Consensus 519 ~g~~~~a~vv~~~~~~-------------------------~~~~~l~~~l~-~~l~~~~~p~~i~~v~~l--P----~t 566 (979)
T 3tsy_A 519 AGEVPVAFVVKSKDSE-------------------------LSEDDVKQFVS-KQVVFYKRINKVFFTESI--P----KA 566 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEEECCCCC-------------------------CCHHHHHHHHH-HhcccccCCeEEEEeCCc--C----cC
Confidence 35889998765431 01267888898 899999999999999998 6 99
Q ss_pred cccccChHHHHHHHHHHHHhhh
Q 004961 699 AALKIKREQLKAKFKDDLQMLY 720 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~~~Y 720 (721)
++|||+|++|+++|.+.+...|
T Consensus 567 ~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 567 PSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp ----------------------
T ss_pred CCCCeeHHHHHHHHHhhcCCcc
Confidence 9999999999999998887665
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-77 Score=732.93 Aligned_cols=517 Identities=20% Similarity=0.264 Sum_probs=422.7
Q ss_pred cccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceee
Q 004961 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (721)
Q Consensus 43 p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (721)
|..+ +.+++++++.+++.+...++ ....+.+ ..|++++|+++++++||++|+++ ++.
T Consensus 432 p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~------------~~~---- 488 (1304)
T 2vsq_A 432 PDQP---VSTINLVDDREREFLLTGLN---PPAQAHE-TKPLTYWFKEAVNANPDAPALTY------------SGQ---- 488 (1304)
T ss_dssp TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCC-CCCHHHHHHHHHHHCTTSEEEES------------SSC----
T ss_pred cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCC-CCCHHHHHHHHHHhCCCCeEEEE------------CCe----
Confidence 7777 88899999988887765555 2223333 37999999999999999999985 232
Q ss_pred ecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 004961 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (721)
Q Consensus 123 ~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~ 202 (721)
.+||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++
T Consensus 489 -------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~ 561 (1304)
T 2vsq_A 489 -------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSA 561 (1304)
T ss_dssp -------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHT
T ss_pred -------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEe
Q 004961 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (721)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 282 (721)
++++|++......+. .++....++.++... .. ............++++|||+|
T Consensus 562 ~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~~~~~ayiiy 614 (1304)
T 2vsq_A 562 AACLLTHQEMKEQAA----ELPYTGTTLFIDDQT--------------------RF---EEQASDPATAIDPNDPAYIMY 614 (1304)
T ss_dssp CCEEEECSTTCTTST----TCCCCSEEEESSCGG--------------------GG---GSCSSCCCCCCCTTSEEEEEE
T ss_pred CCEEEECcchhhhhh----ccCCCCcEEEecccc--------------------cc---ccccCCCCCCCCCCCeEEEEe
Confidence 999999976543321 122222333322110 00 001111223457899999999
Q ss_pred ecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhcc
Q 004961 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (721)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 362 (721)
||||||.||||+++|+++.+. .+....+ .++++|+++++.|++|+.+.+.++.+|+.|+++++.+.....+. .
T Consensus 615 TSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~ 687 (1304)
T 2vsq_A 615 TSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDT-----E 687 (1304)
T ss_dssp ECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCH-----H
T ss_pred CCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCH-----H
Confidence 999999999999999999876 3334445 78899999999999999999889999999999999665444332 2
Q ss_pred CccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHH
Q 004961 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (721)
Q Consensus 363 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (721)
.+...+.++++|+++++|++++.+.+.....
T Consensus 688 ~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~------------------------------------------------- 718 (1304)
T 2vsq_A 688 RLTDLILQENVNVMFATTALFNLLTDAGEDW------------------------------------------------- 718 (1304)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-------------------------------------------------
T ss_pred HHHHHHHHcCCcEEEccHHHHHHHHhhchhc-------------------------------------------------
Confidence 2333489999999999999999886521000
Q ss_pred hCCcEEEEEecCCCCCHHHHHHHHHhh-CCceecccccchhcccccccCCC----CCCCCccCCCcCcceEEEEecCCCC
Q 004961 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGG 517 (721)
Q Consensus 443 ~~~~lr~v~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~ 517 (721)
.++||.+++|||++++++.+.+.+.+ +++++|+||+||++++++..... .....++|+|++|++++|+| +++.
T Consensus 719 -~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~ 796 (1304)
T 2vsq_A 719 -MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQ 796 (1304)
T ss_dssp -HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSC
T ss_pred -CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcC
Confidence 02799999999999999988877766 47899999999999877655432 23447899999999999999 5665
Q ss_pred cccCCCCCCcceEEEccccccccccCCCcccccccccCC--CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeec
Q 004961 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595 (721)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~ 595 (721)
. ++.|+.|||||+|+++++||+|+|+.|+++|..++ +|.+||+|||+|++++||.|+|+||+||+||++ |+||+
T Consensus 797 ~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~rie 872 (1304)
T 2vsq_A 797 L---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIR-GHRIE 872 (1304)
T ss_dssp B---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEET-TEEEE
T ss_pred C---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEEC-CEeeC
Confidence 4 45899999999999999999999999999997432 455899999999999999999999999999995 99999
Q ss_pred chHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHC
Q 004961 596 LGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA 672 (721)
Q Consensus 596 ~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (721)
|.|||++|.+||+|.+|+|++.++. ..++|+|++.... + .++|+++++ +
T Consensus 873 ~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~----------~-----------------~~~l~~~l~-~ 924 (1304)
T 2vsq_A 873 LEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL----------S-----------------AEDVKAHLK-K 924 (1304)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------C-----------------HHHHHHHHH-H
T ss_pred HHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------C-----------------HHHHHHHHH-H
Confidence 9999999999999999999997654 4799999976421 0 267888888 8
Q ss_pred CCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHH
Q 004961 673 KLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 712 (721)
Q Consensus 673 ~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 712 (721)
+||.||+|+.|++++++ | +|++|||||++|.+.+
T Consensus 925 ~Lp~ymvP~~~~~l~~l--P----~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 925 QLPAYMVPQTFTFLDEL--P----LTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp HSCGGGSCSEEEEESCC--C----CCSSCSSCCSCCCCCC
T ss_pred hChHhhhccEEEEeccc--C----CCCCcccCHhhcCCcc
Confidence 99999999999999998 6 9999999999986543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-76 Score=661.44 Aligned_cols=488 Identities=20% Similarity=0.259 Sum_probs=371.4
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004961 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (721)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~ 162 (721)
||.++|+++++++||++|+++ ++ +++||+||.++++++|++|++. +||+|+|++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQ-----------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SS-----------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CC-----------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 677899999999999999985 23 3799999999999999999987 899999999
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCccCC
Q 004961 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (721)
Q Consensus 163 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (721)
+|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++........... ....+..+.........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 130 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL---- 130 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc----
Confidence 9999999999999999999999999999999999999999999999977644322111 11111111110000000
Q ss_pred ccCCCCCceEe-eHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEE
Q 004961 243 VSGGISNWTVS-SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (721)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (721)
.......... ..+.................++|+++|+|||||||.||||++||+++.+.+......+ ++.++|+++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l 208 (501)
T 3ipl_A 131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL 208 (501)
T ss_dssp --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence 0000000000 0011111000001112345789999999999999999999999999999999988888 999999999
Q ss_pred eccChHHHHHHHHHHHHHHhcceEeeCc---cccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhc
Q 004961 322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (721)
Q Consensus 322 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 398 (721)
+.+|++|++++..++.+++.|+++++.+ +..+.+. ++++++|+++++|++++.|.+....
T Consensus 209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------ 271 (501)
T 3ipl_A 209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------ 271 (501)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence 9999999999988888999999999854 3333333 9999999999999999998763100
Q ss_pred chhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccc
Q 004961 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (721)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG 478 (721)
...+||.+++||+++++++.+.+.+ ++++++|.||
T Consensus 272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG 306 (501)
T 3ipl_A 272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG 306 (501)
T ss_dssp --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence 0027999999999999999998887 5999999999
Q ss_pred cchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCC
Q 004961 479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (721)
Q Consensus 479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (721)
+||++..++..... ....+++|+|+++++++|+|++ +++.|||+|+|++++.|||++|+.|.+ | .
T Consensus 307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~ 373 (501)
T 3ipl_A 307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E 373 (501)
T ss_dssp EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence 99998755443322 2356799999999999999843 346799999999999999999999988 6 5
Q ss_pred CCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEEEEEcChHH
Q 004961 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKA 633 (721)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~vv~~~~~ 633 (721)
+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++..+.
T Consensus 374 ~--g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~ 450 (501)
T 3ipl_A 374 N--GYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI 450 (501)
T ss_dssp T--TEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred C--CceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC
Confidence 6 89999999999999999999999999996 69999999999999999999999999987653 578888865321
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 713 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~ 713 (721)
+ .++|+++++ ++||.|++|+.|++++++ | +|++|||+|++|++.++
T Consensus 451 ----------~-----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 451 ----------S-----------------KAQLIAYLS-KHLAKYKVPKHFEKVDTL--P----YTSTGKLQRNKLYREGH 496 (501)
T ss_dssp ----------C-----------------HHHHHHHHH-HHSCGGGSCSEEEECSSC--C---------------------
T ss_pred ----------C-----------------HHHHHHHHH-hhCccccCCCEEEEeccc--C----CCCCCCEeHHHHhhccc
Confidence 1 267888888 889999999999999998 6 99999999999999887
Q ss_pred HH
Q 004961 714 DD 715 (721)
Q Consensus 714 ~~ 715 (721)
++
T Consensus 497 ~~ 498 (501)
T 3ipl_A 497 HH 498 (501)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-76 Score=660.99 Aligned_cols=479 Identities=24% Similarity=0.335 Sum_probs=375.1
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
.+.|+.++|.++++++|+ ++|+++ ++ +++||+||.++++++|++|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~-----------~~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GE-----------RSLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TT-----------EEEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CC-----------eeeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 467899999999999997 999986 33 37999999999999999874 48899
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++..... ......+..+.. +..
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~-~~~--- 142 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDV-DVR--- 142 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEEC-CTT---
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccc-ccc---
Confidence 99999999999999999999999999999999999999999999999999865310 111122222211 100
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCc
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (721)
...........++|+++|+|||||||.||||++||+++.+.+......+ ++.++|
T Consensus 143 ------------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 197 (505)
T 3nyq_A 143 ------------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGED 197 (505)
T ss_dssp ------------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTC
T ss_pred ------------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCc
Confidence 0111122445789999999999999999999999999999999988888 999999
Q ss_pred EEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004961 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 319 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
++++.+|++|.+++.. ++.++..|+++++.+...... +...+ ++++|+++++|+++..+.+........
T Consensus 198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~--------~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~- 267 (505)
T 3nyq_A 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEG--------AAREL-NDGATMLFGVPTMYHRIAETLPADPEL- 267 (505)
T ss_dssp EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHH--------HHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHH-
T ss_pred EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHH--------HHHHH-hhCCeEEEehHHHHHHHHHhhhcCchh-
Confidence 9999999999999865 788899999999843221111 11125 679999999999999987632110000
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccc
Q 004961 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~Y 477 (721)
....+++|.+++||+++++++.+++...+|++++|.|
T Consensus 268 -------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~Y 304 (505)
T 3nyq_A 268 -------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERY 304 (505)
T ss_dssp -------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEE
T ss_pred -------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeeccc
Confidence 0011378999999999999999999998999999999
Q ss_pred ccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCC
Q 004961 478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (721)
Q Consensus 478 G~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (721)
|+||++..++.........+++|+|+|+++++|+| +++..++.++.|+.|||+|+|++++.|||++|+.|+++|. .+
T Consensus 305 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--~~ 381 (505)
T 3nyq_A 305 GMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT--ED 381 (505)
T ss_dssp EETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC--TT
T ss_pred chhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc--CC
Confidence 99999987776666666678999999999999999 6676665445589999999999999999999999999996 56
Q ss_pred CcceEeeCcEEEEccCCeEEEEecC-CCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHH
Q 004961 558 GMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (721)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~-~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~ 633 (721)
|||+|||+|++|+||+|+|+||+ ||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+..
T Consensus 382 --g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~ 458 (505)
T 3nyq_A 382 --GFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA 458 (505)
T ss_dssp --SCEEEEEEEEECTTSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT
T ss_pred --CCCccCCeEEECCCccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC
Confidence 89999999999999999999998 599997 5999999999999999999999999998765 3699999987521
Q ss_pred HHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
...+ .++|+++++ ++||.||+|+.|++++++ | +|++|||+|++|++
T Consensus 459 ---------~~~~---------------~~~l~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 459 ---------APPA---------------LGTLADHVA-ARLAPHKRPRVVRYLDAV--P----RNDMGKIMKRALNR 504 (505)
T ss_dssp ---------SCCC---------------HHHHHHHHH-HHTCGGGSCSEEEECSCC--C----C-------------
T ss_pred ---------CCCC---------------HHHHHHHHH-hhCCCCcCccEEEEECCC--C----CCCCcCeeHHhhcc
Confidence 0000 267888888 899999999999999998 6 99999999999986
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-75 Score=656.67 Aligned_cols=517 Identities=20% Similarity=0.224 Sum_probs=314.4
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004961 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 155 (721)
..+....|+.++|+++|+++||++|+++.+ +. ........+++||+||.++++++|+.|.+.|+ +|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~-----------~~--~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~g 79 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVAT-----------GF--LGSQKIVTEDWTYKKLNETANQVANLIIHASL-HG 79 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEE-----------CC-------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SS
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhccc-----------cc--ccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CC
Confidence 344556899999999999999999998742 10 00001223689999999999999999999999 79
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCC
Q 004961 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+++.....+ ..+....++...
T Consensus 80 d~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-- 152 (562)
T 3ite_A 80 RAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK-- 152 (562)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT--
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc--
Confidence 9999999999999999999999999999999999999999999999999999987654321 111111222110
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC----
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---- 311 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---- 311 (721)
...+.+....... ........++++++|+|||||||.||||++||+++.+.+......+
T Consensus 153 ----------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 215 (562)
T 3ite_A 153 ----------------NQSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVA 215 (562)
T ss_dssp ----------------CHHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------chhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhcccc
Confidence 0122222222211 1112345678899999999999999999999999998877654431
Q ss_pred ---CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 312 ---PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 312 ---~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
..+...+++++..|++|.+++..++.++..|+++++.......+. +...++++++|+++++|++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-------~~~~i~~~~~t~~~~~P~~l~~~~~ 288 (562)
T 3ite_A 216 PKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD-------LPRTFRELGVTHAGIVPSLLDQTGL 288 (562)
T ss_dssp GGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS-------HHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred chhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH-------HHHHHHHcCCCEEEcCHHHHhhccc
Confidence 157788999999999999998888889999999988543322211 2233889999999999998876522
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
. ....++||.+++||+++++++.+.+++.
T Consensus 289 ~---------------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 289 V---------------------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp C---------------------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred C---------------------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 0 0012589999999999999999999988
Q ss_pred hCCceecccccchhcccccccCC-CCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcc
Q 004961 469 MGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (721)
Q Consensus 469 ~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (721)
++++++|.||+||++..++.... .....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.|||++|+.
T Consensus 318 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~ 394 (562)
T 3ite_A 318 DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDA 394 (562)
T ss_dssp SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTC
T ss_pred CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCccc
Confidence 89999999999999877665443 334558999999999999999655554 45889999999999999999999999
Q ss_pred cccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcC-cccceEEEEecCCCc----e
Q 004961 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS-DYVDNIMIHADPFHN----Y 622 (721)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~-p~V~~~~V~g~~~~~----~ 622 (721)
|...+ .+|.+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+| |.|.+++|++.+++. .
T Consensus 395 t~~~~---~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~ 470 (562)
T 3ite_A 395 KGFCD---INGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470 (562)
T ss_dssp CSEEE---ETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred ccccc---CCCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceE
Confidence 98876 565579999999999999999999999999997 69999999999999997 888899988876653 2
Q ss_pred EEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC-ccc
Q 004961 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT-AAL 701 (721)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t-~~g 701 (721)
+++++.......... + ....+-.+.+.++|+++|+ ++||.||+|+.|++++++ | +| ++|
T Consensus 471 ~~~~v~~~~~~~~~~----------~---~~~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l--P----~t~~~G 530 (562)
T 3ite_A 471 LVSFVASSGAAVRGE----------L---RWINENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI--P----LRDTSA 530 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeccccccccc----------c---cccccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC--C----CCCCCC
Confidence 444444332221100 0 0000111234568999998 999999999999999998 6 77 999
Q ss_pred ccChHHHHHHHHHH
Q 004961 702 KIKREQLKAKFKDD 715 (721)
Q Consensus 702 Ki~R~~l~~~~~~~ 715 (721)
|++|++|+++|++.
T Consensus 531 Ki~r~~L~~~~~~~ 544 (562)
T 3ite_A 531 KTDAKALEHMFHTL 544 (562)
T ss_dssp --------------
T ss_pred cchHHHHHHHHhcc
Confidence 99999999998754
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-73 Score=651.21 Aligned_cols=508 Identities=19% Similarity=0.206 Sum_probs=392.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004961 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (721)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Va 159 (721)
...|+.++|+++++++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~ 69 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLN----------K---------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL 69 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEE----------T---------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEc----------C---------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 45799999999999999999998752 1 1225899999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCCEEEEecCCCC---HHHHHHHHHhcCceEEEECccchhHHHhhh-ccCCCceEEEEecCC
Q 004961 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLG---EDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEND 235 (721)
Q Consensus 160 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~ 235 (721)
|+++|++++++++|||+++|+++||+++.++ .+++.++++++++++++++.+....+.... ...+....+.
T Consensus 70 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~----- 144 (590)
T 3kxw_A 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP----- 144 (590)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE-----
T ss_pred EEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc-----
Confidence 9999999999999999999999999999884 578999999999999999987765543322 2222211111
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
....+++.... .....+....++|+++|+|||||||.||||++||+++++.+.+....+ ++.
T Consensus 145 ----------------~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 145 ----------------AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp ----------------EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred ----------------eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 11111111111 111223456789999999999999999999999999999999998888 999
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
++|++++++|++|++++.. ++.+++.|+++++.++..+... +..+...++++++|++.++|+++..+.+......
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 282 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREEK 282 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh
Confidence 9999999999999999987 7888999999998543322111 1122333999999999999999998876321100
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC----
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---- 470 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g---- 470 (721)
......++||.+++||+++++++.+.+.+.++
T Consensus 283 --------------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 283 --------------------------------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp --------------------------------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred --------------------------------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 01112368999999999999999999988773
Q ss_pred --CceecccccchhcccccccCCC---------------------------CCCCCccCCCcCcceEEEEecCCCCcccC
Q 004961 471 --APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTS 521 (721)
Q Consensus 471 --~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~ 521 (721)
.+++|.||+||++.+++..... ....+++|+|+++ ++|+|++++..
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~--- 393 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP--- 393 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB---
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC---
Confidence 4799999999999877654321 1123689999998 88999655654
Q ss_pred CCCCCcceEEEccccccccccCCCcccccccccC----CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecch
Q 004961 522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (721)
Q Consensus 522 ~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~ 597 (721)
+++|+.|||+|+||+++.|||++|+.|+++|..+ .+|.+||+|||+|++| ||+|+|+||+||+||+ +|+||+|.
T Consensus 394 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~ 471 (590)
T 3kxw_A 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQ 471 (590)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHH
T ss_pred CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHH
Confidence 4588999999999999999999999999999631 1233599999999999 9999999999999998 69999999
Q ss_pred HHHHHH-hcCcccc--eEEEEecCCC--ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHC
Q 004961 598 KVEAAL-ISSDYVD--NIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAA 672 (721)
Q Consensus 598 eIE~~l-~~~p~V~--~~~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (721)
|||++| ..+|.|. +|+|++.+++ ..+++++++.++.. +... .++|.+.++ .
T Consensus 472 eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~----~~~l~~~l~-~ 527 (590)
T 3kxw_A 472 DIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFM-------------------DDVA----QDNLFNEIF-E 527 (590)
T ss_dssp HHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTC-------------------CHHH----HHHHHHHHH-H
T ss_pred HHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccc-------------------cchh----HHHHHHHHH-H
Confidence 999999 8899999 7999887654 35788887764310 0011 133444444 4
Q ss_pred CCCC-Ccccc-EEEee--CCCCCCCCCccCcccccChHHHHHHHHH
Q 004961 673 KLDK-FEIPA-KIKLM--PEPWTPEAGLVTAALKIKREQLKAKFKD 714 (721)
Q Consensus 673 ~L~~-~~~P~-~i~~~--~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 714 (721)
+|+. |++|. .++++ +++ | +|++|||+|++|+++|.+
T Consensus 528 ~l~~~~~~p~~~i~~v~~~~l--P----~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 528 LVYENHQLEVHTIVLIPLKAM--P----HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp HHHHHHSCCCCEEEEEETTCS--C----CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCceeEEEEECCCcc--C----cCCCcHHHHHHHHHHHHc
Confidence 4443 66775 56666 456 6 999999999999999875
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-61 Score=538.32 Aligned_cols=408 Identities=18% Similarity=0.199 Sum_probs=312.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
..|+.++|+++++++||++|+++.+.. ++. .+.++++||+||.++++++|++|+++|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 479999999999999999999875311 111 1334689999999999999999999996 9999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCc--eEEEEecCC
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFEND 235 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~ 235 (721)
+++|+++|++++|||+++|+++||+++ .++.+++.++|++++++++|++....+.+.......+.. ..++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 788999999999999999999998877776655443322 123332211
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCC
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (721)
.. ............++|+++|+|||||||.||||++||+|+++.+......+ .+.
T Consensus 168 ~~------------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 222 (480)
T 3t5a_A 168 DL------------------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FAD 222 (480)
T ss_dssp CT------------------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTT
T ss_pred cc------------------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccc
Confidence 10 00111123455789999999999999999999999999999998888777 666
Q ss_pred C------CcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHH
Q 004961 316 R------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (721)
Q Consensus 316 ~------~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 388 (721)
+ +|++++++|++|++++.. ++.+|+.|+++++.++..+... +..+...++++++| +..+|+++..+..
T Consensus 223 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~ 297 (480)
T 3t5a_A 223 TDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAA 297 (480)
T ss_dssp TTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHH
T ss_pred cccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHH
Confidence 6 999999999999999765 6888999999998644322111 12233338999999 8899999888765
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHh
Q 004961 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (721)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~ 468 (721)
..... .......+++||.+++||+++++++.+.+.+.
T Consensus 298 ~~~~~-------------------------------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 334 (480)
T 3t5a_A 298 RRTTD-------------------------------------------DDMAGRDLGNILTILSGSERVQAATIKRFADR 334 (480)
T ss_dssp HHCCT-------------------------------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcCc-------------------------------------------ccccccchhhhheeeecCCcCCHHHHHHHHHH
Confidence 31100 00111233689999999999999999999888
Q ss_pred hC------CceecccccchhcccccccCCCC-------------------------CCCCccCCCcCcceEEEEecCCCC
Q 004961 469 MG------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGG 517 (721)
Q Consensus 469 ~g------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~p~~~v~i~d~~~~~ 517 (721)
++ +.++|.||+||++.+++...... ...+++|+|+| ++++|+|++++.
T Consensus 335 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~ 413 (480)
T 3t5a_A 335 FARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCI 413 (480)
T ss_dssp SGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTE
T ss_pred HhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCc
Confidence 73 47999999999998777654332 12358999999 999999955555
Q ss_pred cccCCCCCCcceEEEccccccccccCCCccccccccc-------CCCCcceEeeCcEEEEccCCeEEEEec
Q 004961 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV-------DERGMCWFYTGDIGQVYPDGCLEIIDR 581 (721)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~-------~~~g~gw~~TGDlg~~d~dG~l~i~GR 581 (721)
. +++|+.|||+|+||+++.|||++|++|+++|.. ..+++|||+|||+|++| ||+|+|+||
T Consensus 414 ~---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 414 E---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp E---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred C---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 5 458899999999999999999999999999951 11134899999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-55 Score=462.24 Aligned_cols=313 Identities=18% Similarity=0.242 Sum_probs=263.1
Q ss_pred CCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccc-c
Q 004961 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL-T 352 (721)
Q Consensus 274 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~-~ 352 (721)
.||+|||+|||||||.||||++||+++++.+......+ +++++|++++++|++|++|+..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 37899999999999999999999999999999998888 999999999999999999999888899999999884432 2
Q ss_pred ccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHH
Q 004961 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (721)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (721)
..+ .++++++|++.++|++++.+++....
T Consensus 115 ~~~-----------~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------- 143 (358)
T 4gs5_A 115 PLA-----------GLDHADFDFVAMVPMQLQSILENSAT---------------------------------------- 143 (358)
T ss_dssp TTT-----------TCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------
T ss_pred HHH-----------HHHHhCCeEEEcChHHHHHhhccccc----------------------------------------
Confidence 222 38999999999999999998753110
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEe
Q 004961 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (721)
Q Consensus 433 ~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d 512 (721)
....++||.+++||+++++++.+++++ +|++++|.||+||++..++.........+.+|.+.||+++.+.
T Consensus 144 --------~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~- 213 (358)
T 4gs5_A 144 --------SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVD- 213 (358)
T ss_dssp --------GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEEC-
T ss_pred --------cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEec-
Confidence 001248999999999999999999987 5999999999999998888877777778999999999988764
Q ss_pred cCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCee
Q 004961 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (721)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~ 592 (721)
+.|||+++|+.. .+ |||+|||+|++|+|| ++|+||+||+||+ +|+
T Consensus 214 -------------~~Gel~~~g~~~------------------~~--g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~ 258 (358)
T 4gs5_A 214 -------------ERGCLHISGAVT------------------NG--QTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV 258 (358)
T ss_dssp -------------TTSEEEEESGGG------------------TT--CCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred -------------CcCceEEecccc------------------cC--cceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence 349999988632 44 899999999999888 6778999999997 699
Q ss_pred eecchHHHHHH---hcCcccceEEEE-ecCCCc---eEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHH
Q 004961 593 YISLGKVEAAL---ISSDYVDNIMIH-ADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665 (721)
Q Consensus 593 ~v~~~eIE~~l---~~~p~V~~~~V~-g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 665 (721)
||+|.|||++| .+||+|.+|+|+ +.+|+. .++|+|+...... ..++|
T Consensus 259 ~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~--------------------------~~~~l 312 (358)
T 4gs5_A 259 KIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEA--------------------------LTERL 312 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHH--------------------------HHHHH
T ss_pred EECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCc--------------------------CHHHH
Confidence 99999999877 468999998876 555543 5888888765321 13678
Q ss_pred HHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHHHHHHHH
Q 004961 666 SKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 716 (721)
Q Consensus 666 ~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i 716 (721)
+++++ ++||.|++|+.|++++++ | +|++|||+|++|+++|++..
T Consensus 313 ~~~l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 313 TAEIR-SRVSTYENPKHIYFAKAF--A----KTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHH-HHSCGGGSCSCEEEESSC--C----BCTTSCBCHHHHHHHTC---
T ss_pred HHHHH-hhCCCCCCceEEEEECCc--C----CCCCCChhHHHHHHHhhhhc
Confidence 88888 899999999999999998 6 99999999999999987653
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=418.38 Aligned_cols=351 Identities=15% Similarity=0.139 Sum_probs=262.5
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh---hCCCCCCCcEEEeccCh-
Q 004961 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL- 326 (721)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl- 326 (721)
.+.+.+++.... +.......++++++|+|||||||.||||++||+++.+....... .+ ++.++|++++.+|+
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYG 146 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCc
Confidence 345566665432 11123446789999999999999999999999999877655443 45 88999999999998
Q ss_pred HHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHH
Q 004961 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406 (721)
Q Consensus 327 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~ 406 (721)
+|..++...+.++..|+++++.+... ...+...++++++|+++++|+++..|.+....... .
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---~------- 208 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQ--------TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM---D------- 208 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCC--------HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC---C-------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCC--------HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC---C-------
Confidence 57777777788899999998843321 11122338999999999999999998764321100 0
Q ss_pred HHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhccc-
Q 004961 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG- 485 (721)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~- 485 (721)
...+++|.+++||+++++++.+.+++.+|++++|.||+||+++.
T Consensus 209 -----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~ 253 (443)
T 2y4o_A 209 -----------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPG 253 (443)
T ss_dssp -----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEE
T ss_pred -----------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCe
Confidence 01158999999999999999999998889999999999998443
Q ss_pred ccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeC
Q 004961 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565 (721)
Q Consensus 486 ~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TG 565 (721)
++..... ...+ .+.|.++++++|+|++++..+ ++|+.|||+|+|. |++.| ++ +||+||
T Consensus 254 ~~~~~~~-~~~g-~~~~~~~~~~~i~d~~~g~~~---~~G~~Gel~v~~~------------t~~~~---p~--~~y~TG 311 (443)
T 2y4o_A 254 VACECVE-TKDG-PVIWEDHFYPEIIDPVTGEVL---PDGSQGELVFTSL------------TKEAM---PV--IRYRTR 311 (443)
T ss_dssp EEEECTT-TCCS-EEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS---CC--SSEEEE
T ss_pred EEeccCC-CCCc-eEEccCCeEEEEEcCCCCCCC---CCCCceEEEEeCC------------CcccC---hh--heeecC
Confidence 3322211 1112 455678999999996667654 4889999999972 44555 56 899999
Q ss_pred cEEEEccC-CeE-----EEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC---CceEEEEEEcCh--HHH
Q 004961 566 DIGQVYPD-GCL-----EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF---HNYCVALVVPSH--KAL 634 (721)
Q Consensus 566 Dlg~~d~d-G~l-----~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~---~~~~~A~vv~~~--~~~ 634 (721)
|+|+++++ |++ +|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++ ...++|+|++.+ +.
T Consensus 312 Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~- 389 (443)
T 2y4o_A 312 DLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA- 389 (443)
T ss_dssp EEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT-
T ss_pred CEEEEcCCCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc-
Confidence 99999999 987 899999999998 599999999999999999999999887643 246889999876 21
Q ss_pred HHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC-ccccEEEeeC--CCCCCCCCccCcccccChHHHHH
Q 004961 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.. ... -.++++++++ ++|+.| ++|..|.+++ ++ | +|++||++|+..++
T Consensus 390 ---------~~--------~~~----~~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~l--P----~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 390 ---------SV--------TDG----ERAALARELQ-HRIKTMVGVSSGVTVLAAGGI--P----ATATGKARRVIDRR 440 (443)
T ss_dssp ---------TC--------CHH----HHHHHHHHHH-HHHHHHTCCCCEEEEECTTCS--C----CCTTSCCCSEEECC
T ss_pred ---------cc--------hhh----HHHHHHHHHH-HHHHHHhCCceEEEEeCCCcc--c----CccCCcceEEEecc
Confidence 00 000 0245556665 667666 4888888885 55 6 99999999976443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=415.73 Aligned_cols=330 Identities=16% Similarity=0.150 Sum_probs=246.2
Q ss_pred CCCC-CCeEEEEeecCCCCCcceeeeccHHHHHHHHHHH---hhCCCCCCCcEEEeccChHHHHHH-HHHHHHHHhcceE
Q 004961 271 LPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAI 345 (721)
Q Consensus 271 ~~~~-~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~ 345 (721)
...+ +++++|+|||||||.||||++||+++.+.+..+. ..+ ++.++|++++.+|++|..+. ...+.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 3455 8999999999999999999999999987766553 334 78999999999998765554 4567789999999
Q ss_pred eeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCC
Q 004961 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425 (721)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 425 (721)
++.+.... ..+...++++++|+++++|+++..|.+........
T Consensus 160 ~~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------------------- 202 (436)
T 3qov_A 160 VPAAAGNS--------KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID----------------------------- 202 (436)
T ss_dssp ECCCSCCH--------HHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-----------------------------
T ss_pred EeCCCCCH--------HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-----------------------------
Confidence 88433211 11233389999999999999999998753221000
Q ss_pred chhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhcccccccCCCCCCCCccCCCcCc
Q 004961 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505 (721)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~ 505 (721)
...+++|.+++||+++++++.+.+++.+|++++|.||+||+++.++..... ....+|.|.++
T Consensus 203 ----------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~ 264 (436)
T 3qov_A 203 ----------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDC 264 (436)
T ss_dssp ----------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTT
T ss_pred ----------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCc
Confidence 012589999999999999999999999999999999999996542222221 12236777889
Q ss_pred ceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccCC------e---E
Q 004961 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG------C---L 576 (721)
Q Consensus 506 ~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG------~---l 576 (721)
++++|+|++++..+ ++|+.|||+|+|. |++.| ++ +||+|||+|+++++| + +
T Consensus 265 ~~v~i~d~~~g~~~---~~g~~Gel~v~~~------------~~~~~---~~--~~y~TGDl~~~~~~gc~cG~~~~~il 324 (436)
T 3qov_A 265 YLVEIIDPETGEPV---PEGEIGELVLTTL------------DREMM---PL--IRYRTRDLTRILPGKCPCGRTHLRID 324 (436)
T ss_dssp EEEEEECTTTCSBC---STTCCEEEEEEES------------SCCSS---CC--CSEEEEEEECEECSCCTTCCCSCEEC
T ss_pred eEEEEEECCCCCCC---CCCCceEEEEecc------------CcCCc---eE--EEEEcCCEEEEcCCCCCCCCCccccC
Confidence 99999997777665 4889999999983 34455 56 899999999999998 5 6
Q ss_pred EEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC---CceEEEEEEcChHHHHHHHHHhCCCcccHHHHhc
Q 004961 577 EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF---HNYCVALVVPSHKALEKWAHEASIKYEDLSELCN 653 (721)
Q Consensus 577 ~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~---~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (721)
+|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++ ...++|+|+++ +. ..+
T Consensus 325 ~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~----------~~~------- 385 (436)
T 3qov_A 325 RIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL----------STD------- 385 (436)
T ss_dssp CCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT----------CCC-------
T ss_pred cccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc----------ccc-------
Confidence 999999999998 599999999999999999999999998765 34699999987 32 000
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-ccccEEEeeC--CCCCCCCCccCcccccChHH
Q 004961 654 KAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 654 ~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~ 707 (721)
+... .+++++.++ ++|+.+ ++|..|++++ ++ | +|+ ||++|..
T Consensus 386 ~~~~----~~~l~~~l~-~~l~~~~~~p~~i~~v~~~~l--P----~t~-GKi~R~~ 430 (436)
T 3qov_A 386 NYIE----LEKIRRDII-RQLKDEILVTPKVKLVKKGSL--P----QSE-GKAVRVK 430 (436)
T ss_dssp CHHH----HHHHHHHHH-HHHHHHHSSCCEEEEECTTCC--C------------CEE
T ss_pred chhh----HHHHHHHHH-HHHHHhcCCceEEEEeCCCcc--c----CcC-CcceEEE
Confidence 0011 133444444 455556 7888999998 66 6 999 9999863
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=411.19 Aligned_cols=346 Identities=16% Similarity=0.138 Sum_probs=260.2
Q ss_pred EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh---hCCCCCCCcEEEeccCh-H
Q 004961 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A 327 (721)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 327 (721)
+.+.+++..... .......++++++|+|||||||.||||++||+++...+..... .+ ++.++|++++.+|+ +
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL 145 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence 445566654321 1123446789999999999999999999999999877655433 45 88999999999998 6
Q ss_pred HHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 004961 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI 407 (721)
Q Consensus 328 h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~ 407 (721)
|..++...+.++..|+++++.+... ...+...++++++|+++++|+++..|.+........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~----------- 206 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQ--------TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD----------- 206 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCC--------HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-----------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCC--------HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-----------
Confidence 8888877788899999998743321 111223389999999999999999987643211000
Q ss_pred HHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceecccccchhccc-c
Q 004961 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-S 486 (721)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~ 486 (721)
...+++|.+++||+++++++.+.+++.+|++++|.||+||+++. +
T Consensus 207 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~ 252 (437)
T 2y27_A 207 ----------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV 252 (437)
T ss_dssp ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEE
T ss_pred ----------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCee
Confidence 00148999999999999999999998889999999999998432 3
Q ss_pred cccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCc
Q 004961 487 TFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (721)
Q Consensus 487 ~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGD 566 (721)
+...... ...++.|.++++++|+|++++..+ ++|+.|||+|+|. |++.| ++ +||+|||
T Consensus 253 ~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~---~~g~~Gel~v~~~------------t~~~~---~~--~~y~TGD 310 (437)
T 2y27_A 253 ASECVET--KDGPTIWEDHFYPEIIDPETGEVL---PDGELGELVFTSL------------TKEAL---PI--IRYRTRD 310 (437)
T ss_dssp EECCTTT--CSSCEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS---CC--CSEEEEE
T ss_pred EEecCCC--CCceeEccCceEEEEEcCCCCCCC---CCCCccEEEEecC------------CcCCc---hh--heeecCC
Confidence 3322211 112556778999999996666654 4889999999972 44555 56 8999999
Q ss_pred EEEEcc-CCeE-----EEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCC---CceEEEEEEcChHHHHHH
Q 004961 567 IGQVYP-DGCL-----EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF---HNYCVALVVPSHKALEKW 637 (721)
Q Consensus 567 lg~~d~-dG~l-----~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~---~~~~~A~vv~~~~~~~~~ 637 (721)
+|++|+ +|++ +|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++ ...++|+|+++++..
T Consensus 311 l~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~--- 386 (437)
T 2y27_A 311 LTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA--- 386 (437)
T ss_dssp EECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT---
T ss_pred EEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc---
Confidence 999999 6986 999999999998 699999999999999999999988887543 346899999876420
Q ss_pred HHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC-ccccEEEeeC--CCCCCCCCccCcccccChHH
Q 004961 638 AHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~~ 707 (721)
. +. .-.+++++.++ ++|+.| ++|..|.+++ ++ | +|+ ||++|+.
T Consensus 387 -------~--------~~----~~~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~l--P----~t~-GKi~r~~ 432 (437)
T 2y27_A 387 -------P--------DT----AAIQVAKQALA-YDIKSLIGVTAVINVLPVNGI--E----RSV-GKARRVV 432 (437)
T ss_dssp -------T--------CH----HHHHHHHHHHH-HHHHHHHCCCEEEEECCTTCS--C----CCS-SSCCCEE
T ss_pred -------c--------hh----hhHHHHHHHHH-HHHHHhcCCceEEEEeCCCCc--c----CCC-CcceEEE
Confidence 0 00 00245556666 667777 4888888885 55 6 899 9999974
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=271.33 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=170.6
Q ss_pred CCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC--CCCCCCcEEEeccCh-HHHHHHHHHHHHHHhcceEee-
Q 004961 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGY- 347 (721)
Q Consensus 272 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~~~- 347 (721)
..++++++|+|||||||.||||+++|+++.+.+.+....+ .++.++|++++.+|+ +|++++...+.++..|++++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999999888654322 267899999999999 999999887778899994433
Q ss_pred -Cccc---ccccc---------chhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 004961 348 -GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414 (721)
Q Consensus 348 -~~~~---~~~~~---------~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (721)
++|. .+... ...+...+...++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 2222 00000 0000002223489999999999999999987642100
Q ss_pred hhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHH-Hhh-CCceecccccchhcccccccCCC
Q 004961 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSEWD 492 (721)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~-~~~-g~~l~~~YG~TE~~~~~~~~~~~ 492 (721)
....+++|.+++||+++++++.+.+. +.+ +++++|.||+||+++++.....
T Consensus 227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 00113799999999999999999999 888 8999999999999876532211
Q ss_pred CCCCCccCCC------cCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCc
Q 004961 493 DPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (721)
Q Consensus 493 ~~~~~~vG~p------~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGD 566 (721)
.++|+| +|+++++|+|++++..+ ++|+.|||+|++.. ++.|. -+|+|||
T Consensus 280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~v---p~G~~GEl~vt~l~------------~~~~l------~ry~tgD 334 (369)
T 3hgu_A 280 ----TSESQQVIYDSFSPFITYDVVDSITAQTV---EYGERGNVIVTHLS------------PWAFY------PRVAERD 334 (369)
T ss_dssp ----CTTCSSCEEECCTTTEEEEEECTTTCSBC---CTTCEEEEEEEEEE------------TTEEE------EEEEEEE
T ss_pred ----ccCCCcccccCCCCCeEEEEECCCCCcCC---CCCCceEEEEEEcC------------ccccc------ccccCCc
Confidence 158999 99999999996577654 48999999998742 12221 3688888
Q ss_pred EEEEccC--C-------eEEEEecCCCeEEcCCee
Q 004961 567 IGQVYPD--G-------CLEIIDRKKDIVKLQHGE 592 (721)
Q Consensus 567 lg~~d~d--G-------~l~i~GR~~d~ik~~~G~ 592 (721)
++.+.+. | .+..++|.++..||. |.
T Consensus 335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv 368 (369)
T 3hgu_A 335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GV 368 (369)
T ss_dssp EEEEECCSTTCSSCEEEEEEECC------------
T ss_pred eEEEecCCCCCcCcccccceeccccCCCceee-ec
Confidence 8887543 2 356677878888775 64
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-12 Score=107.87 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=64.9
Q ss_pred ecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHH
Q 004961 580 DRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAE 656 (721)
Q Consensus 580 GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (721)
.|.|||||++ |+||+|.|||++|.+||+|.+++|++.+++ ..+.++|+..++. . .+..
T Consensus 1 srADDmIiv~-G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~ 61 (109)
T 3lax_A 1 SNADDMIILK-GVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG 61 (109)
T ss_dssp CGGGSCEEET-TEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred CCcCEEEEEC-CEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence 3899999985 999999999999999999999999887654 3577888776532 0 1222
Q ss_pred HHHHHHHHHHHHHHHCCCCCCccccEEEeeC--CCCCCCCCccCcccccChH
Q 004961 657 AVNEVQQALSKVAKAAKLDKFEIPAKIKLMP--EPWTPEAGLVTAALKIKRE 706 (721)
Q Consensus 657 ~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~--~~~~p~~~~~t~~gKi~R~ 706 (721)
..+++.++|++.++ ..+ .+|..+++++ ++ | +| +||++|-
T Consensus 62 ~~~~l~~~i~~~l~-~~~---gv~~~v~~v~~~~l--P----rt-sGKi~Rv 102 (109)
T 3lax_A 62 RLQALTREITRQLK-DEI---LVTPRVKLVPKGAL--P----KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHH-HHH---SSCCEEEEECTTCS--C----CC----CCCE
T ss_pred hhhhhHHHHHHHHH-HHh---CCccceEEEcCCee--c----CC-CCCcchh
Confidence 23344455555554 222 2455677775 34 5 88 7999883
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=102.12 Aligned_cols=136 Identities=15% Similarity=0.249 Sum_probs=85.1
Q ss_pred hCCc---EEEEEecCCCCCHHHHHHHHHhh-CCcee-cccccchhcccccccCCCCCCCCccCC-CcCc-ceEEEEecCC
Q 004961 443 LGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDE 515 (721)
Q Consensus 443 ~~~~---lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~ 515 (721)
+.++ +..++.||. ..-...++..+ +.+++ ..|++||+.... .......++..+. .+|+ .-...++.++
T Consensus 300 lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~p~~~~~~L~p~~~ffEFIP~~~ 374 (609)
T 4b2g_A 300 IWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFGL--NLNPMSKPSEVSYTIMPNMAYFEFLPHEH 374 (609)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEEE--CSCTTSCGGGCCEEECTTSCEEEEEEGGG
T ss_pred hCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeeee--ecCCCCCcccCceeecCCcEEEEEEeccc
Confidence 4466 556666663 22234444444 57766 999999974332 2111111222332 2233 3344555333
Q ss_pred C------Cc------ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc----CCeEEEE
Q 004961 516 G------GY------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEII 579 (721)
Q Consensus 516 ~------~~------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~----dG~l~i~ 579 (721)
. .. ...+..|+.+||+|... .|.| -|++||+++++. ..++.|+
T Consensus 375 ~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~~ 433 (609)
T 4b2g_A 375 SSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHFV 433 (609)
T ss_dssp TTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEEE
Confidence 2 11 11356788999999644 2443 289999999973 4689999
Q ss_pred ecCCCeEEcCCeeeecchHHHHHHhc
Q 004961 580 DRKKDIVKLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 580 GR~~d~ik~~~G~~v~~~eIE~~l~~ 605 (721)
||.+++|++ .|++|++.+||+++.+
T Consensus 434 gR~~~~l~~-~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 434 RRKNVLLSI-DSDKTDEAELQKAVDN 458 (609)
T ss_dssp EETTCCBCS-SSCCBCHHHHHHHHHH
T ss_pred EecCCeEEc-cccCCCHHHHHHHHHH
Confidence 999999997 5999999999999973
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=103.48 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=86.4
Q ss_pred hCCc---EEEEEecCCCCCHHHHHHHHHhh-CCcee-cccccchhcccccccCCCCCCCCccCC-CcCc-ceEEEEecCC
Q 004961 443 LGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDE 515 (721)
Q Consensus 443 ~~~~---lr~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~ 515 (721)
+.++ +..++.||. ..-...++..+ +.+++ ..|++||+...+ .......+...|. .+|+ +-...++.++
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGI--NLDPLCKPEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEE--CSCTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeee--ccCCCCCcccCceeecCCcEEEEEEeccc
Confidence 3467 666677773 22234444444 67777 999999964322 2111111223332 2233 3445565332
Q ss_pred CC---c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEcc----CCeEEEEecCCCeE
Q 004961 516 GG---Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEIIDRKKDIV 586 (721)
Q Consensus 516 ~~---~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~----dG~l~i~GR~~d~i 586 (721)
.. . ...+..|+.+||+|...+ |.| -|++||+.+++. ..++.|+||.|++|
T Consensus 370 ~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp TCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred cCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 21 1 113567889999997652 322 389999999975 46899999999999
Q ss_pred EcCCeeeecchHHHHHHhc
Q 004961 587 KLQHGEYISLGKVEAALIS 605 (721)
Q Consensus 587 k~~~G~~v~~~eIE~~l~~ 605 (721)
.+ .|+++++.+||+++.+
T Consensus 429 ~~-~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 429 SI-DSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp CS-SSCCEEHHHHHHHHHH
T ss_pred Ee-eeeECCHHHHHHHHHH
Confidence 97 5999999999999974
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.7e-07 Score=96.80 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=88.9
Q ss_pred hCCcEE--EEEecCCCCCHHHHHHHHHhh-CCcee-cccccchhcccccccCCCCCCCCccCC-CcCc-ceEEEEecCCC
Q 004961 443 LGGRIR--FMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWDEG 516 (721)
Q Consensus 443 ~~~~lr--~v~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~~~ 516 (721)
+.++++ .++.+|.. ..-...++..+ +.+++ ..|++||+...+ .......++..+. .+|+ .-...++.++.
T Consensus 300 lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi--~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 300 LFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAA--NVTPRLSPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp HCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEE--CCCTTSCTTTCCEEECTTSCEEEEEEC---
T ss_pred hCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeee--ecCCCCCccccceeecCCcEEEEEEecccc
Confidence 457785 23334422 22234444444 57777 999999974332 2211222222232 2333 23344443221
Q ss_pred C-----c--ccCCCCCCcceEEEccccccccccCCCcccccccccCCCCcceEeeCcEEEEccC----CeEEEEecCCCe
Q 004961 517 G-----Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GCLEIIDRKKDI 585 (721)
Q Consensus 517 ~-----~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G~l~i~GR~~d~ 585 (721)
. . +..+..|+.+||+|...+ |.| -|++||+.++..- .++.|+||.|++
T Consensus 376 ~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~ 434 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNLI 434 (581)
T ss_dssp ----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred cCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCCe
Confidence 1 1 123678889999997653 322 3899999999742 579999999999
Q ss_pred EEcCCeeeecchHHHHHHhc------Cc--ccceEEEEec
Q 004961 586 VKLQHGEYISLGKVEAALIS------SD--YVDNIMIHAD 617 (721)
Q Consensus 586 ik~~~G~~v~~~eIE~~l~~------~p--~V~~~~V~g~ 617 (721)
+++. |+++++.+||+++.+ .. .|.|-.++.+
T Consensus 435 l~~~-Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 435 LSIN-IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp BCSS-SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred EEee-eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence 9985 999999999999864 22 3556555554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=1.7 Score=45.98 Aligned_cols=105 Identities=13% Similarity=-0.030 Sum_probs=83.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--cHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n--~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++..+++- ....+..+++++..|+.+++.++ ..++.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 468999999999999998988999999999998874 34455677888999999888754 477899999999999999
Q ss_pred EECccchhHHHhhhc------cCCCceEEEEecC
Q 004961 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 234 (721)
+..+.....+.+... .++.++.++.-+.
T Consensus 183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 999987766654321 1456777776443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=2 Score=45.52 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=81.2
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++++. ..++.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 4689999998888888888889999999999988853 3444567888999999987755 478999999999999999
Q ss_pred EECccchhHHHhhhc------cCCCceEEEEec
Q 004961 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
+..+.....+.+... ..+.++.+++-+
T Consensus 187 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 219 (437)
T 2y27_A 187 MVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA 219 (437)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence 999888766554321 135677776644
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.9 Score=45.75 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=81.2
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 004961 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (721)
Q Consensus 129 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~v 206 (721)
..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++.. ..++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 4689999998888888888889999999999988853 3445567888999999888765 478899999999999999
Q ss_pred EECccchhHHHhhhc------cCCCceEEEEec
Q 004961 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (721)
Q Consensus 207 i~~~~~~~~~~~~~~------~~~~~~~ii~~~ 233 (721)
+..+.....+.+... ..+.++.+++-+
T Consensus 189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 221 (443)
T 2y4o_A 189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA 221 (443)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence 999887765544321 135677776644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 721 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-66 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 5e-61 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-54 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-49 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 4e-36 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-30 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-24 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 229 bits (585), Expect = 1e-66
Identities = 98/625 (15%), Positives = 187/625 (29%), Gaps = 124/625 (19%)
Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQS 179
+E + +Y E+ C FA+ L++ G AI E +A C R
Sbjct: 93 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152
Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAV-----------SSSLKTIKN 228
I+ +A+ + ++ +I + ++ ++ + ++ ++++
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212
Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288
VI + GS+ D G W + + ++ P I+YTSGSTG
Sbjct: 213 VIVLKRTGSDID--WQEGRDLWWRDLIEKASPEHQPEAMNAEDP-----LFILYTSGSTG 265
Query: 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE--SIMLCAGCAIG 346
PKGV+ T G + AA + + D+Y + V + + C +
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325
Query: 347 YGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406
+ + + V + ++ P
Sbjct: 326 FEGVPNWPTPARMCQ-----VVDKHQVNILYTAPTAI----------------------- 357
Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
R L A + R + G P++ ++ +
Sbjct: 358 ----RALMAEGDKAIEGTDRSSL------------------RILGSVGEPINPEAWEWYW 395
Query: 467 ICMG---APIGQAYGLTETCAGSTFSEWDDPSV--GRVGPPVPCCYIKLVSWDEGGYKTS 521
+G P+ + TET + G P LV D G
Sbjct: 396 KKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV--DNEG---- 449
Query: 522 DKPMP---RGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
P G +V+ F + + + Y + +++GD + DG
Sbjct: 450 -HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGYY 506
Query: 577 EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPSHKA 633
I R D++ + G + ++E+AL++ + + I A V +H
Sbjct: 507 WITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH-- 563
Query: 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE-PWTP 692
E S E EV+ + ++ P + P T
Sbjct: 564 ----GEEPS------------PELYAEVRNWV-----RKEIGPLATPDVLHWTDSLPKTR 602
Query: 693 EAGLVTAALKIKREQLKAKFKDDLQ 717
+G KI R L+ D
Sbjct: 603 -SG------KIMRRILRKIAAGDTS 620
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 212 bits (539), Expect = 5e-61
Identities = 128/650 (19%), Positives = 205/650 (31%), Gaps = 146/650 (22%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
+ E++ + + +LH G+ TY EV+ RA
Sbjct: 12 NLWDFLERAAALFGRKEVV-------------------SRLHTGEVHRTTYAEVYQRARR 52
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
GL G V R A L A+ + T L + + LN +
Sbjct: 53 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
L+ D L + A+ LKT+++ + + E +
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------------GYLAYEEA 156
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA-AAIKTLIPNPGRSDVYL 321
DP + + YT+G+TGLPKGV+ +H +V + AA DV L
Sbjct: 157 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVL 216
Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
+P+ HV G + ++ G T A VP
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG-------VTFTAGVPT 269
Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
++ L D + R
Sbjct: 270 VW--------------------------------------------LALADYLESTGHRL 285
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP------- 494
+R ++ GG+ MG + Q YGLTET +
Sbjct: 286 ---KTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341
Query: 495 ----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
+ G P+P +++ DE G GE+ + G +T GY+ N T
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVA--DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
D +F TGDI +G +EI DR KD++K GE+IS +E AL+ V
Sbjct: 400 ALTPD----GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVK 454
Query: 611 NIMIHADP---FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+ A P + +A+VVP + E+ + L K
Sbjct: 455 EAAVVAIPHPKWQERPLAVVVPR----------------------GEKPTPEELNEHLLK 492
Query: 668 VAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKAKFKDDL 716
A K+++P E P T+A K + L+ ++K+
Sbjct: 493 ----AGFAKWQLPDAYVFAEEIP-------RTSAGKFLKRALREQYKNYY 531
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 196 bits (498), Expect = 2e-54
Identities = 97/617 (15%), Positives = 185/617 (29%), Gaps = 94/617 (15%)
Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
FE G TY E+ + C A L + G A+ E I R
Sbjct: 80 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139
Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS---LKTIKNVIYFEND 235
+++ ++L +N+ +I + + + + ++ +
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199
Query: 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
+ + + EK ++ + ++YTSGSTG PKGV
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQH 259
Query: 296 THGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTD 355
+ + A + + DV+ + + + G + +TL
Sbjct: 260 STAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI----TGHTYVVYGPLLYGCATLVFEG 315
Query: 356 TSSKIKKGTKGD-VSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
T + D + K T P R L
Sbjct: 316 TPAYPNYSRYWDIIDEHKVTQFYVAPTAL---------------------------RLLK 348
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---A 471
S+ L+ + R + G P++A+ + + +G
Sbjct: 349 RAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEKIGKNEI 390
Query: 472 PIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
PI Y TE+ + + G P ++ D + + G
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEG 448
Query: 529 EIVVGGF--NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
+ V + + N + + Y G +++TGD DG + I+ R D+V
Sbjct: 449 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGYIWILGRVDDVV 506
Query: 587 KLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPSHKALEKWAHEASI 643
+ G +S ++EAA+I V + + D A VV +K+ A + +
Sbjct: 507 NVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 565
Query: 644 KYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAALK 702
+ + + + K + F P I L+ + P T + K
Sbjct: 566 Q-----------DIKKHLVFTVRK-----DIGPFAAPKLIILVDDLP-------KTRSGK 602
Query: 703 IKREQLKAKFKDDLQML 719
I R L+ + L
Sbjct: 603 IMRRILRKILAGESDQL 619
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 179 bits (454), Expect = 3e-49
Identities = 115/634 (18%), Positives = 208/634 (32%), Gaps = 125/634 (19%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
T ++ K + + +D + TY E F+ +
Sbjct: 18 TAGEQLHKAMKRYALVP----------GTIAFTDAHIEVNI--------TYAEYFEMSVR 59
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
A + +G N + R + +E +++F+ G + V E L++S+N +Q
Sbjct: 60 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
T + K L+K+ V L I+ +I ++ G S +T +
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHLPPGFN 174
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
+ V S +A+IM +SGSTGLPKGV + H + + I
Sbjct: 175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 234
Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382
++ G +TL ++ + + + +L
Sbjct: 235 L-------------SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD----- 276
Query: 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442
YK + A + + F + ++ +
Sbjct: 277 --------------------------YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA 310
Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
GG G + I Q YGLTET + + D G VG
Sbjct: 311 SGGAPLSKEVG--------EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
VP K+V D G K + RGE+ V G + +GY NNP T+ + D
Sbjct: 363 VPFFEAKVVDLDTG------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD---- 412
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA--- 616
W ++GDI D I+DR K ++K G ++ ++E+ L+ + + +
Sbjct: 413 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD 471
Query: 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDK 676
D A+VV H ++ +++ + +V A K
Sbjct: 472 DDAGELPAAVVVL--------EHGKTMTEKEIVDYVAS------------QVTTAKK--- 508
Query: 677 FEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLK 709
+ + + E P G K+ +++
Sbjct: 509 --LRGGVVFVDEVPKGL-TG------KLDARKIR 533
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 140 bits (353), Expect = 4e-36
Identities = 104/640 (16%), Positives = 189/640 (29%), Gaps = 150/640 (23%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
T+ + ++ P L + G + T+ E+ R +
Sbjct: 3 TVNEMLRRAATRAPDHCAL----------AVPARGLRL-----------THAELRARVEA 41
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
A+ L G R A++A + IA R + L L + +
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
Query: 203 VTTLICD-SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
+T + +Q+ S S I + DG G
Sbjct: 102 MTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG------------------- 142
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LIPNPGRSDVY 320
P++ A I YTSG+TGLPK +I + + T + GR +V
Sbjct: 143 ---PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380
L +PL HV+ A + A + ++ + + PT + A+
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALA 259
Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
A ++ S+R
Sbjct: 260 AAAAHAG--------------------------------------------SSLKLDSLR 275
Query: 441 AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
V GA + ++ + YG TE + + G
Sbjct: 276 HVT--------FAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGE----IVVGGFNVTAGYFNNPGKTSEVYKVDE 556
+++ D+ + GE IV + GY N P T+E +
Sbjct: 328 FFSEVRIVRIGGGV-------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ--- 377
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
W+ T D+ P+G + I+ R D++ GE I ++E L ++ V +++
Sbjct: 378 --DGWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 617 DP---FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAK 673
+ A VVP ++ + L C ++++
Sbjct: 435 LADQRWGQSVTACVVP--------RLGETLSADALDTFC-----------------RSSE 469
Query: 674 LDKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKAKF 712
L F+ P + ++ + P A K+ R QL +
Sbjct: 470 LADFKRPKRYFILDQLP-------KNALNKVLRRQLVQQV 502
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 124 bits (311), Expect = 2e-30
Identities = 92/643 (14%), Positives = 168/643 (26%), Gaps = 135/643 (20%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W G T L + DR A + G+ W +Y E+
Sbjct: 22 WAG-ETFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
RA A+G G R + E+F FR V S + +
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 198 LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE 257
+ I K + I F
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRS------------LARQVQSKLPTLKNIIVAGEAEEFLP 165
Query: 258 VEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
+E L PV + VA + + GSTGL K + TH + + + + +
Sbjct: 166 LEDL-HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
A + + G + ++ P+
Sbjct: 225 VYLAALPMAHNY-----PLSSPGVLGVLYAGGRVVLSP----------------SPSPDD 263
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
A P I E+ +T S ++L
Sbjct: 264 AFPLI-------------EREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL------- 303
Query: 438 SVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVG 497
+GG + + A Y + E + G
Sbjct: 304 ----QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE-----EIIVNTQG 354
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
+ P + WD+ KP G ++ G GY+ + +
Sbjct: 355 KPMSPYDESRV----WDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF----T 404
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMI 614
++ TGDI ++ DG + + R KD + GE ++ +VE L++ V + + +
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSM 463
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKL 674
++P +A + L + L
Sbjct: 464 PDQFLGERSCVFIIPRDEAPKA--------------------------AELKAFLRERGL 497
Query: 675 DKFEIPAKIKLMPE-PWTPEAGLVTAALKIKREQLKAKFKDDL 716
++IP +++ + P T K+ ++ L+ + L
Sbjct: 498 AAYKIPDRVEFVESFP-------QTGVGKVSKKALREAISEKL 533
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 104 bits (261), Expect = 3e-24
Identities = 58/271 (21%), Positives = 95/271 (35%), Gaps = 47/271 (17%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VPC 505
I+ +I G+ S AYG TET +T ++G P P
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFY 563
++ DE GE+ +GG + GY+ P TS+ + + G +
Sbjct: 337 QNTQIYIVDENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK 394
Query: 564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFH 620
TGD + DG +E + R + VK+ G + L +VE+ L+ Y+ +
Sbjct: 395 TGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453
Query: 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIP 680
Y A V E I E L + + +L + IP
Sbjct: 454 PYLCAYFVS----------EKHIPLEQLRQFS------------------SEELPTYMIP 485
Query: 681 AKIKLMPE-PWTPEAGLVTAALKIKREQLKA 710
+ + + P +T+ KI R+QL
Sbjct: 486 SYFIQLDKMP-------LTSNGKIDRKQLPE 509
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.9e-78 Score=687.56 Aligned_cols=522 Identities=18% Similarity=0.227 Sum_probs=418.2
Q ss_pred HHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 004961 84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163 (721)
Q Consensus 84 l~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~~~ 163 (721)
-..+++++++++||++|+++.. +. .++.+++||+||.++++++|++|+++|+++||+|+|+++
T Consensus 74 ~~n~ldrh~~~~~d~~Ali~~~----------~~-------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~ 136 (643)
T d1pg4a_ 74 AANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 136 (643)
T ss_dssp HHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHHHHHHHHhCCCCEEEEEEe----------cC-------CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecc
Confidence 4567888899999999999742 11 234468999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccch---------hHHHhhh--ccCCCceEEEEe
Q 004961 164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVS--SSLKTIKNVIYF 232 (721)
Q Consensus 164 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~--~~~~~~~~ii~~ 232 (721)
|++++++++|||+++|++++|+++.++++++.+++++++++++|+++... ..+.... ...+.+.+++.+
T Consensus 137 n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 216 (643)
T d1pg4a_ 137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 216 (643)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred cchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEe
Confidence 99999999999999999999999999999999999999999999986432 2222222 245677888887
Q ss_pred cCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHH-HHhhC
Q 004961 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLI 311 (721)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~ 311 (721)
....... .. .......+.+..... .....+...+++|+++|+|||||||.||||++||++++..... ....+
T Consensus 217 ~~~~~~~-----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~ 289 (643)
T d1pg4a_ 217 KRTGSDI-----DW-QEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF 289 (643)
T ss_dssp CSSCCCC-----CC-CBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT
T ss_pred ccCCccc-----cc-ccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh
Confidence 6654321 00 011233444444332 2233345568899999999999999999999999997765444 44556
Q ss_pred CCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHH
Q 004961 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (721)
Q Consensus 312 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 390 (721)
.+.++|++++++|++|++++.. ++.+|+.|+++++.+....... +..++..++++++|+++++|++++.|.+..
T Consensus 290 -~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~ 364 (643)
T d1pg4a_ 290 -DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMAEG 364 (643)
T ss_dssp -TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHTTG
T ss_pred -CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCC----HHHHHHHHHHHCCcEEEehHHHHHHHHhCc
Confidence 8999999999999999999876 6678999999998432211111 122334499999999999999999987531
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhC
Q 004961 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (721)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g 470 (721)
... .+..+.++||.+++||+++++++.+++.+.+|
T Consensus 365 ~~~---------------------------------------------~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g 399 (643)
T d1pg4a_ 365 DKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 399 (643)
T ss_dssp GGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTT
T ss_pred chh---------------------------------------------ccccCCCceEEEEEEeCCCCHHHHHHHHHHhC
Confidence 110 01123368999999999999999999988874
Q ss_pred ---CceecccccchhcccccccCCC--CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccccC
Q 004961 471 ---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFN 543 (721)
Q Consensus 471 ---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~ 543 (721)
+++++.||+||+++.++...+. ..+.+++|+|+||++++|+| ++|..+ ++|+.|||+|+| |+++.|||+
T Consensus 400 ~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~---~~g~~Gel~v~~~~p~~~~~~~~ 475 (643)
T d1pg4a_ 400 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQARTLFG 475 (643)
T ss_dssp TTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTCCCEETT
T ss_pred CCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCC---CCCceEEEEEecCCCcccccccC
Confidence 6799999999999877655443 33568999999999999999 667654 478999999999 578999999
Q ss_pred CCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---
Q 004961 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (721)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~--- 620 (721)
+++.+.+.+....+ |||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+++
T Consensus 476 ~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~g 552 (643)
T d1pg4a_ 476 DHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552 (643)
T ss_dssp CHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTE
T ss_pred ChhhchhhhcccCC--CeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCC
Confidence 99988887753334 89999999999999999999999999997 5999999999999999999999999998765
Q ss_pred ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcc
Q 004961 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAA 700 (721)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~ 700 (721)
+.++|||+++++. ..+ .++.++|+++++ ++|++|++|+.|++++++ | +|++
T Consensus 553 e~~~a~Vv~~~~~----------~~~------------~~~~~~i~~~~~-~~L~~~~vP~~i~~v~~l--P----~T~s 603 (643)
T d1pg4a_ 553 QAIYAYVTLNHGE----------EPS------------PELYAEVRNWVR-KEIGPLATPDVLHWTDSL--P----KTRS 603 (643)
T ss_dssp EEEEEEEEECTTC----------CCC------------HHHHHHHHHHHH-HHTCGGGCCSEEEECSCC--C----BCTT
T ss_pred eEEEEEEEECCCC----------CCC------------HHHHHHHHHHHH-hhCCcccCccEEEEECCC--C----CCCC
Confidence 3699999988643 111 234568889998 899999999999999998 6 9999
Q ss_pred cccChHHHHHHHHHH
Q 004961 701 LKIKREQLKAKFKDD 715 (721)
Q Consensus 701 gKi~R~~l~~~~~~~ 715 (721)
|||+|++|++++..+
T Consensus 604 GKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 604 GKIMRRILRKIAAGD 618 (643)
T ss_dssp SCBCHHHHHHHHHTC
T ss_pred cCccHHHHHHHhcCC
Confidence 999999999998754
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.3e-77 Score=683.13 Aligned_cols=538 Identities=17% Similarity=0.187 Sum_probs=414.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI 160 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~Vai 160 (721)
+..+.+|+++|+++||++|+++.. +. .+..+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~~----------~~-------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i 121 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFEG----------DE-------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEEC----------SS-------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEe----------cC-------CCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 345889999999999999999742 11 244568999999999999999997 679999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccc---------hhHHHhhhccCCCceEEEE
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIY 231 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~ 231 (721)
+++|++++++++|||+++|++++|+++.++++++.++++++++++++++... ...+.......+.+.....
T Consensus 122 ~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (640)
T d1ry2a_ 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 201 (640)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred EeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeee
Confidence 9999999999999999999999999999999999999999999999998643 2334444455566666655
Q ss_pred ecCCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh-h
Q 004961 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-L 310 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~ 310 (721)
........ ... .......+..... .........+..++|+++|+|||||||.||||+++|++++........ .
T Consensus 202 ~~~~~~~~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~ 275 (640)
T d1ry2a_ 202 YRKTNNPS----VAF-HAPRDLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 275 (640)
T ss_dssp ECSSCCSS----CCC-CSSSEEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred eccccccc----ccc-ccccccccccccc-ccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh
Confidence 54433221 000 0111222222222 222233345567899999999999999999999999998877665554 4
Q ss_pred CCCCCCCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHH
Q 004961 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (721)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 389 (721)
+ .+.++|++++++|++|+++... ++.+|+.|+++++.+....... +..++..++++++|++.++|++++.|.+.
T Consensus 276 ~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 350 (640)
T d1ry2a_ 276 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA 350 (640)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred c-CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCC----HHHHHHHHHHhCccEEEcChHHHHHHHhc
Confidence 5 8999999999999999999765 6778999998887433222111 12233449999999999999999987542
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhh
Q 004961 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (721)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~ 469 (721)
.... .+...+++||.+++||+++++++.+++.+.+
T Consensus 351 ~~~~---------------------------------------------~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~ 385 (640)
T d1ry2a_ 351 GDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 385 (640)
T ss_dssp CTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred cccc---------------------------------------------cccCCCCceEEEEEecccCcHHHHHHHHHhc
Confidence 1000 0111236899999999999999999999988
Q ss_pred C---CceecccccchhcccccccCCC---CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc--ccccccc
Q 004961 470 G---APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY 541 (721)
Q Consensus 470 g---~~l~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY 541 (721)
| ..++++||+||++...+..... ..+.+++|+|+||++++|+|++++.... +.+..|||+++| |+++.||
T Consensus 386 g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~--~~~~~Gel~i~~~~p~~~~gy 463 (640)
T d1ry2a_ 386 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN--TSHAEGVLAVKAAWPSFARTI 463 (640)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE--CSSCEEEEEESSCCTTSCCEE
T ss_pred CCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccC--CCCceEEEEEEecCCCccccc
Confidence 6 4689999999998776554433 2356899999999999999955444332 345679999998 6899999
Q ss_pred cCCCcccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC-
Q 004961 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (721)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~- 620 (721)
|+|++.|.+.|..+.+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++
T Consensus 464 ~~~~e~t~~~~~~~~~--gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~ 540 (640)
T d1ry2a_ 464 WKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 540 (640)
T ss_dssp TTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCT
T ss_pred ccCHHHHHhhhccCCC--CeEEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCC
Confidence 9999999999863344 99999999999999999999999999996 6999999999999999999999999998865
Q ss_pred --ceEEEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccC
Q 004961 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 698 (721)
Q Consensus 621 --~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t 698 (721)
+.++|+|++.++.....+ ..+..+++.++|+++++ ++|++|++|+.|++++++ | +|
T Consensus 541 ~ge~~~a~Vv~~~~~~~~~~---------------~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l--P----~T 598 (640)
T d1ry2a_ 541 TGQAVAAFVVLKNKSSWSTA---------------TDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL--P----KT 598 (640)
T ss_dssp TSCCCEEEEEEC---------------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC--C----BC
T ss_pred CCeEEEEEEEEcCCCCcccc---------------chHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCC--C----CC
Confidence 359999999876421100 01111345678888998 899999999999999998 6 99
Q ss_pred cccccChHHHHHHHHHHHHhh
Q 004961 699 AALKIKREQLKAKFKDDLQML 719 (721)
Q Consensus 699 ~~gKi~R~~l~~~~~~~i~~~ 719 (721)
++|||+|++||+++..+.+++
T Consensus 599 ~sGKi~R~~Lr~~~~~~~~~~ 619 (640)
T d1ry2a_ 599 RSGKIMRRILRKILAGESDQL 619 (640)
T ss_dssp TTSCBCHHHHHHSCC------
T ss_pred CCcCccHHHHHHHHhCCcccc
Confidence 999999999999988766554
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-75 Score=658.75 Aligned_cols=507 Identities=23% Similarity=0.321 Sum_probs=386.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004961 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (721)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 158 (721)
+...||+++|+++|+++||++|+++.+ + ++++++||+||.++++++|++|.++|+++||+|
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~~----------~---------g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V 68 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEec----------C---------CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEE
Confidence 445689999999999999999998752 3 334679999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCC
Q 004961 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (721)
Q Consensus 159 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (721)
+|+++|+++|++++|||+++|++++|++|.++.+++.++|+++++++++++.........+...++.++.++........
T Consensus 69 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (534)
T d1v25a_ 69 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE 148 (534)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT
T ss_pred EEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888775544321
Q ss_pred ccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC-CCCCCC
Q 004961 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPGRS 317 (721)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~ 317 (721)
. ....... ...........++++++|+|||||||.||||+++|.+++.......... .....+
T Consensus 149 ~------------~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~ 212 (534)
T d1v25a_ 149 G------------YLAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 212 (534)
T ss_dssp T------------CEEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTT
T ss_pred c------------ccccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccc
Confidence 1 1111111 1112223456788999999999999999999999999987665543332 266789
Q ss_pred cEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHHHhh
Q 004961 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (721)
Q Consensus 318 d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 397 (721)
|++++.+|++|.+++...+..+..|+++++..+...... +...+.++++|++.++|+++..+......
T Consensus 213 d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-------~~~~~~~~~vt~~~~~p~~~~~~~~~~~~----- 280 (534)
T d1v25a_ 213 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPAS-------LVELFDGEGVTFTAGVPTVWLALADYLES----- 280 (534)
T ss_dssp CEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHH-------HHHHHHHTTCCEEEECHHHHHHHHHHHHH-----
T ss_pred cccccccchhhhccccccceeeeecceeeeccccccccc-------cchhhhhccccccccCchhhhhhhhhhcc-----
Confidence 999999999999999888888888888877443321111 22238899999999999999988764321
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCceeccc
Q 004961 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (721)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~~~Y 477 (721)
.....++||.+++||++++++..+++++ +|.+++++|
T Consensus 281 ------------------------------------------~~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~y 317 (534)
T d1v25a_ 281 ------------------------------------------TGHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGY 317 (534)
T ss_dssp ------------------------------------------HTCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEE
T ss_pred ------------------------------------------ccccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeec
Confidence 1113369999999999999999998885 589999999
Q ss_pred ccchhcccccccCCCCC-----------CCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCc
Q 004961 478 GLTETCAGSTFSEWDDP-----------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 478 G~TE~~~~~~~~~~~~~-----------~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
|+||++..++....... ..+++|+|+||++++|+| ++++.++ .+.++.|||+|+|++++.|||++++
T Consensus 318 G~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~gY~~~~~ 395 (534)
T d1v25a_ 318 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGNEE 395 (534)
T ss_dssp ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred cccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCC-CCCCeeEEEEEcCCcccceecCChh
Confidence 99999988765433221 236899999999999999 6676665 4457899999999999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~ 623 (721)
.|.+.|. .| |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .+
T Consensus 396 ~t~~~~~--~d--g~~~TGDlg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l 470 (534)
T d1v25a_ 396 ATRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 470 (534)
T ss_dssp HHHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEE
T ss_pred hhhhhcc--cC--CCCccCceeEECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEE
Confidence 9999986 66 89999999999999999999999999997 69999999999999999999999999987653 58
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCccccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKI 703 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi 703 (721)
+|+|+++.+... ..+.++.+++ .+||+|++|+.|++++++ | +|++|||
T Consensus 471 ~a~vv~~~~~~~-------------------------~~~~~~~~~~-~~l~~~~~P~~i~~~~~l--P----~t~~GKi 518 (534)
T d1v25a_ 471 LAVVVPRGEKPT-------------------------PEELNEHLLK-AGFAKWQLPDAYVFAEEI--P----RTSAGKF 518 (534)
T ss_dssp EECC---------------------------------------------CCCTTTSCSBC--------------------
T ss_pred EEEEEeCCCCCC-------------------------HHHHHHHHHH-hcCCcCCCccEEEEECCC--C----CCCCccc
Confidence 899888754311 0122334466 899999999999999987 6 9999999
Q ss_pred ChHHHHHHHHH
Q 004961 704 KREQLKAKFKD 714 (721)
Q Consensus 704 ~R~~l~~~~~~ 714 (721)
+|++||++|++
T Consensus 519 ~R~~lr~~~~~ 529 (534)
T d1v25a_ 519 LKRALREQYKN 529 (534)
T ss_dssp CCTTHHHHSTT
T ss_pred cHHHHHHHHHh
Confidence 99999998854
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=2.8e-74 Score=648.20 Aligned_cols=515 Identities=22% Similarity=0.284 Sum_probs=404.2
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004961 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (721)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 155 (721)
.|++ ..|+.++|.+++++|+++|+.+.-. |+. ..+++||+||.+++.++|++|+++|+++|
T Consensus 12 ~p~~-~~t~~~~l~~~~~~~~~~P~~~a~~----------d~~--------~~~~lTy~el~~~~~~lA~~L~~~Gi~~G 72 (541)
T d1lcia_ 12 YPLE-DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTN 72 (541)
T ss_dssp SCCC-SSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCC-CCCHHHHHHHHHHhhCCCCCeEEEE----------eCC--------CCeEeeHHHHHHHHHHHHHHHHHcCcCCC
Confidence 3444 3699999999999995555433211 111 11369999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCC
Q 004961 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (721)
Q Consensus 156 d~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (721)
|+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++++..+.+.++...++..+.++.++..
T Consensus 73 d~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (541)
T d1lcia_ 73 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 152 (541)
T ss_dssp CEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred CCCccCCccCCCCCceEeeHHHHHhcCC------CCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHh
Q 004961 236 GSEKDSGVSGGISNWTVSSFSEVEKLGK------RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (721)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (721)
.... ...++.+...... ....+.....++++++|+|||||||.||||++||++++........
T Consensus 153 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~ 221 (541)
T d1lcia_ 153 TDYQ-----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221 (541)
T ss_dssp SCBT-----------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTC
T ss_pred cccc-----------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhh
Confidence 3221 1223333322111 1112234456789999999999999999999999999988777655
Q ss_pred hC--CCCCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHH
Q 004961 310 LI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (721)
Q Consensus 310 ~~--~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 387 (721)
.. ..+.+++++++.+|++|.+++...+..+..|+.++.......... ...+..+++|.++++|.++..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~t~~~~~p~~~~~~~ 293 (541)
T d1lcia_ 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELF--------LRSLQDYKIQSALLVPTLFSFFA 293 (541)
T ss_dssp TTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCSEEECCHHHHHHHH
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccchh--------HHHHhhhhccccccCcccccccc
Confidence 43 256789999999999999999888888888888877332222211 11278899999999999999886
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHH
Q 004961 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (721)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~ 467 (721)
..... .....+++|.+++||+++++.+.+++.+
T Consensus 294 ~~~~~-----------------------------------------------~~~~~~~l~~v~~gG~~~~~~~~~~~~~ 326 (541)
T d1lcia_ 294 KSTLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKEVGEAVAK 326 (541)
T ss_dssp HCSCG-----------------------------------------------GGSCCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred ccccc-----------------------------------------------cccccccceEEEeccccccccccccccc
Confidence 52110 1112358999999999999999998888
Q ss_pred hhCC-ceecccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCc
Q 004961 468 CMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (721)
Q Consensus 468 ~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (721)
.++. .++++||+||+++.++.........+++|+|+||++++|+|+|++..+ ++|+.|||+|+|++++.||+++++
T Consensus 327 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~---~~g~~Gel~v~g~~~~~gY~~~~~ 403 (541)
T d1lcia_ 327 RFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPE 403 (541)
T ss_dssp HTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTBHH
T ss_pred ccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcCC---CCCCeEEEEEccCccCCeeCCChh
Confidence 8864 689999999999988888777777899999999999999997777654 488999999999999999999999
Q ss_pred ccccccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceE
Q 004961 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (721)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~ 623 (721)
.+...+. .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.+
T Consensus 404 ~~~~~~~--~~--~~~~TGDl~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~ 478 (541)
T d1lcia_ 404 ATNALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 478 (541)
T ss_dssp HHHHHBC--TT--SCEEEEEEEEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred hhhhccc--CC--ccccCCCeeEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEE
Confidence 9888875 56 89999999999999999999999999998 5999999999999999999999999997654 358
Q ss_pred EEEEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCC-ccccEEEeeCCCCCCCCCccCcccc
Q 004961 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKF-EIPAKIKLMPEPWTPEAGLVTAALK 702 (721)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~P~~i~~~~~~~~p~~~~~t~~gK 702 (721)
+|+|++.++. +.+ .++|+++++ ++|+++ ++|+.|++++++ | +|++||
T Consensus 479 ~a~v~~~~~~----------~~~---------------~~~l~~~~~-~~l~~~~~~p~~i~~v~~l--P----~t~~GK 526 (541)
T d1lcia_ 479 AAVVVLEHGK----------TMT---------------EKEIVDYVA-SQVTTAKKLRGGVVFVDEV--P----KGLTGK 526 (541)
T ss_dssp EEEEEECTTC----------CCC---------------HHHHHHHHH-HHSCGGGSCTTEEEEESSC--C----C-----
T ss_pred EEEEEECCCC----------CCC---------------HHHHHHHHH-HhCCccccCCcEEEEeCCC--C----cCCCcC
Confidence 8999987642 111 256778888 677766 579999999987 6 999999
Q ss_pred cChHHHHHHHHHH
Q 004961 703 IKREQLKAKFKDD 715 (721)
Q Consensus 703 i~R~~l~~~~~~~ 715 (721)
|+|++|++++.++
T Consensus 527 i~r~~l~~~~~~~ 539 (541)
T d1lcia_ 527 LDARKIREILIKA 539 (541)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh
Confidence 9999999998764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=8.6e-72 Score=623.83 Aligned_cols=487 Identities=21% Similarity=0.273 Sum_probs=399.1
Q ss_pred ccccCCCCCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCC
Q 004961 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153 (721)
Q Consensus 74 ~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~ 153 (721)
...++|...||.++|+++|+++||++|+++ +++ ++||+||.++++++|++|+++|++
T Consensus 15 ~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv~ 71 (514)
T d1amua_ 15 TKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIG 71 (514)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHHcCcC
Confidence 456778889999999999999999999986 444 799999999999999999999999
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEec
Q 004961 154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (721)
Q Consensus 154 ~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (721)
+||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+..... .....+. .
T Consensus 72 ~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~-~ 147 (514)
T d1amua_ 72 KDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NGQVEIF-E 147 (514)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CSEEEEC-C
T ss_pred CcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc---ccccccc-c
Confidence 99999999999999999999999999999999999999999999999999999999887665543221 1111111 1
Q ss_pred CCCCCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCC
Q 004961 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (721)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (721)
.. ............+..++|+++|+|||||||.||+|++||+++..........+ .
T Consensus 148 ~~-----------------------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~ 203 (514)
T d1amua_ 148 ED-----------------------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-N 203 (514)
T ss_dssp CS-----------------------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-C
T ss_pred cc-----------------------cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-c
Confidence 00 00111122223455789999999999999999999999999999999999888 9
Q ss_pred CCCCcEEEeccChHHHHHHHHHHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHH
Q 004961 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (721)
Q Consensus 314 ~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 393 (721)
...+|++++.+|++|.+++...+.++..|+++++..+....+... ....+....++.+..+|.......
T Consensus 204 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (514)
T d1amua_ 204 VTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK-----FEQYINQKEITVITLPPTYVVHLD------ 272 (514)
T ss_dssp CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH-----HHHHHHHTTCCEEEECHHHHTTSC------
T ss_pred ccccccccceeccccccccccccccccccccccccccccccchhh-----hhhhhhhhhcccccceeeeccccc------
Confidence 999999999999999999998889999999998855444333311 112267778888888886544221
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCce
Q 004961 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (721)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l 473 (721)
...+.+++.+++||+++++++.+++.. ++.+
T Consensus 273 -----------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~ 303 (514)
T d1amua_ 273 -----------------------------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTY 303 (514)
T ss_dssp -----------------------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEE
T ss_pred -----------------------------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeE
Confidence 112358999999999999999877755 6889
Q ss_pred ecccccchhcccccccCCCCC---CCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004961 474 GQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
++.||+||++.+++....... ..++.|.+.++..+.+.| +++..+ ++|+.|||+|+||+++.|||++++.+.+
T Consensus 304 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~---~~g~~GEl~v~~~~~~~gY~~~~~~~~~ 379 (514)
T d1amua_ 304 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGEAGELCIGGEGLARGYWKRPELTSQ 379 (514)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred EEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceec---CCCCeeEEEEccCcccccccccccccce
Confidence 999999999988766554433 346788999999999999 666654 4889999999999999999999999988
Q ss_pred ccccC--CCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCCc---eEEE
Q 004961 551 VYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (721)
Q Consensus 551 ~f~~~--~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A 625 (721)
.|..+ .+++|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.. .++|
T Consensus 380 ~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a 458 (514)
T d1amua_ 380 KFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA 458 (514)
T ss_dssp HEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEE
T ss_pred eeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEE
Confidence 88532 234599999999999999999999999999997 69999999999999999999999999987653 6899
Q ss_pred EEEcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccCh
Q 004961 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 705 (721)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R 705 (721)
+|+++++.. .++|+++++ ++|++|++|+.|++++++ | +|++|||+|
T Consensus 459 ~v~~~~~~~---------------------------~~~l~~~~~-~~l~~~~~p~~i~~v~~l--P----~t~~GKi~R 504 (514)
T d1amua_ 459 YFVSEKHIP---------------------------LEQLRQFSS-EELPTYMIPSYFIQLDKM--P----LTSNGKIDR 504 (514)
T ss_dssp EEEESSCCC---------------------------HHHHHHHHH-HHSCGGGSCSEEEECSSC--C----BCTTSSBCG
T ss_pred EEEcCCCCC---------------------------HHHHHHHHH-hhCCcccCceEEEEeCCC--C----CCCCcChhH
Confidence 999876421 267888888 889999999999999998 6 999999999
Q ss_pred HHHHH
Q 004961 706 EQLKA 710 (721)
Q Consensus 706 ~~l~~ 710 (721)
++|++
T Consensus 505 ~~L~~ 509 (514)
T d1amua_ 505 KQLPE 509 (514)
T ss_dssp GGSCC
T ss_pred HhcCC
Confidence 99986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.4e-70 Score=611.22 Aligned_cols=496 Identities=21% Similarity=0.272 Sum_probs=402.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004961 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (721)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai~ 161 (721)
.||+++|+++|+++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|+|+
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~ 81 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ 81 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHHCCCCeEEEE------------CC-----------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence 6999999999999999999985 22 369999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchh-----HHHhhhccCCCceEEEEecCCC
Q 004961 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDG 236 (721)
Q Consensus 162 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~ii~~~~~~ 236 (721)
++|+++|++++|||+++|+++||++|+++.+++.++|++++++++++++.... .........+.+...+......
T Consensus 82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (536)
T d1mdba_ 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE 161 (536)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred eCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc
Confidence 99999999999999999999999999999999999999999999999865432 2222223444444444322211
Q ss_pred CCccCCccCCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhCCCCCC
Q 004961 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316 (721)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 316 (721)
. ...++++ ...+.......++|+++|+|||||||.||||++||+++...+......+ .+.+
T Consensus 162 ~--------------~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~ 222 (536)
T d1mdba_ 162 E--------------FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (536)
T ss_dssp T--------------SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred c--------------ccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-cccc
Confidence 1 1122221 1222233456789999999999999999999999999999999998888 8999
Q ss_pred CcEEEeccChHHHHHHHH-HHHH-HHhcceEeeC---ccccccccchhhccCccccceeecceEEeechHHHHHHHHHHH
Q 004961 317 SDVYLAYLPLAHVLELAA-ESIM-LCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (721)
Q Consensus 317 ~d~~l~~~pl~h~~g~~~-~~~~-l~~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 391 (721)
+|++++.+|++|.+++.. .+.. +..|++++.. ++..+... +++++++.+..+|..+..+.....
T Consensus 223 ~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 291 (536)
T d1mdba_ 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (536)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeccccccccccccccccCCCCHHHHHHH-----------Hhhhccccccccchhhhhhhhhcc
Confidence 999999999999999865 3333 4445655552 23333333 889999999999999888765322
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCC
Q 004961 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (721)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~ 471 (721)
.. ....++++.+++||+++++...+++.+.+|.
T Consensus 292 ~~-----------------------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 324 (536)
T d1mdba_ 292 SR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (536)
T ss_dssp HC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred cc-----------------------------------------------ccccCcceeEEEeccccccccccchhhccCc
Confidence 11 1122589999999999999999999999999
Q ss_pred ceecccccchhcccccccCCC-CCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEccccccccccCCCccccc
Q 004961 472 PIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (721)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (721)
.....||.+|.+..+...... ....+++|.|+++....+++.++++.+ ++++.|||+++|+.++.||+++++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~---~~~~~Gel~v~g~~~~~gY~~~~~~~~~ 401 (536)
T d1mdba_ 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNAA 401 (536)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHHH
T ss_pred eeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCee---cccccceeecCCCccccccccccccccc
Confidence 999999999987655543322 223478999987666666664777654 4889999999999999999999999988
Q ss_pred ccccCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEE
Q 004961 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALV 627 (721)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~v 627 (721)
.+. .+ |||+|||++++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|++|+|++.+++ +.++|+|
T Consensus 402 ~~~--~~--~~~~tGD~~~~~~dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v 476 (536)
T d1mdba_ 402 SFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476 (536)
T ss_dssp HBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred ccc--cc--CccccCccccccCCCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEE
Confidence 886 66 89999999999999999999999999997 6999999999999999999999999997654 3589999
Q ss_pred EcChHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHH
Q 004961 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQ 707 (721)
Q Consensus 628 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~ 707 (721)
++.++.. . .++|+++++++.||+|++|+.|++++++ | +|++|||+|++
T Consensus 477 ~~~~~~~----------~----------------~~~l~~~l~~~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~~ 524 (536)
T d1mdba_ 477 IPRDEAP----------K----------------AAELKAFLRERGLAAYKIPDRVEFVESF--P----QTGVGKVSKKA 524 (536)
T ss_dssp EESSSCC----------C----------------HHHHHHHHHHTTCCGGGSCSEEEECSSC--C----BCTTSCBCHHH
T ss_pred EECCCCC----------C----------------HHHHHHHHHhcCCCcCcCccEEEEECCC--C----cCCCcCccHHH
Confidence 9875421 0 2667888874569999999999999998 6 99999999999
Q ss_pred HHHHHHHHHH
Q 004961 708 LKAKFKDDLQ 717 (721)
Q Consensus 708 l~~~~~~~i~ 717 (721)
|+++|+++|.
T Consensus 525 L~~~~~~~l~ 534 (536)
T d1mdba_ 525 LREAISEKLL 534 (536)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3.5e-66 Score=575.65 Aligned_cols=492 Identities=20% Similarity=0.258 Sum_probs=391.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccccccccCCCcceeeecCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004961 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (721)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~Vai 160 (721)
++||+++|+++|+++||++|+.+.+ ++ +++||+||.++++++|++|+++|+++||+|+|
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i 59 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECC----------CC-----------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEE
Confidence 4799999999999999999998742 33 37999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEECccchhHHHhhhccCCCceEEEEecCCCCCcc
Q 004961 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (721)
Q Consensus 161 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (721)
+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++...... .......... .++.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~i~--------- 128 (503)
T d3cw9a1 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSGSGA-RIIF--------- 128 (503)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTTCCC-EEEE---------
T ss_pred EeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhcccc-cccc---------
Confidence 9999999999999999999999999999999999999999999999998764322 2222222222 2332
Q ss_pred CCccCCCCCceEeeHHHHHhcC----CCCCCCCCCCCCCCeEEEEeecCCCCCcceeeeccHHHHHHHHHHHhhC-CCCC
Q 004961 241 SGVSGGISNWTVSSFSEVEKLG----KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG 315 (721)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~ 315 (721)
+.++.... ...+......+++++++|+|||||||.||+|+++|+++...+......+ ....
T Consensus 129 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~ 194 (503)
T d3cw9a1 129 --------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194 (503)
T ss_dssp --------------HHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSS
T ss_pred --------------chhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcccccccccc
Confidence 22222111 1122233456789999999999999999999999999999998887765 2445
Q ss_pred CCcEEEeccChHHHHHHHH-HHHHHHhcceEeeCccccccccchhhccCccccceeecceEEeechHHHHHHHHHHHHHH
Q 004961 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (721)
Q Consensus 316 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 394 (721)
..++++..+|++|.++... .+.+...++++++........ +...+..++++....+|+.+..+........
T Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (503)
T d3cw9a1 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD--------ALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266 (503)
T ss_dssp TTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHH--------HHHHHHHHTCCEEEECHHHHHHHHHHHHHTC
T ss_pred ccccccccCccccccccccccccccccccccccccccChHH--------hhhhhhhceeecccccccccccccccccccc
Confidence 6789999999998888765 555667777777633322111 1222888999999999999888765322111
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccCCchhhhHHHHHHHHHHHHhCCcEEEEEecCCCCCHHHHHHHHHhhCCcee
Q 004961 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (721)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~l~~~~~~~~~~~~g~~l~ 474 (721)
+....++||.+++||++++++....+...++..+.
T Consensus 267 ---------------------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~ 301 (503)
T d3cw9a1 267 ---------------------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301 (503)
T ss_dssp ---------------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEE
T ss_pred ---------------------------------------------ccccccceEEEEecccccccccccccccccccccc
Confidence 11123589999999999999999999999999999
Q ss_pred cccccchhcccccccCCCCCCCCccCCCcCcceEEEEecCCCCcccCCCCCCcceEEEcc-ccccccccCCCcccccccc
Q 004961 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-FNVTAGYFNNPGKTSEVYK 553 (721)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-~~v~~gY~~~~~~t~~~f~ 553 (721)
+.||+||++..+...........+.+.+.+.....+.+ ..+.. ++.|+.|++++.+ +....||+++++.|.+.|
T Consensus 302 ~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~- 376 (503)
T d3cw9a1 302 NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEI---VANGEEGELIVAASDSAFVGYLNQPQATAEKL- 376 (503)
T ss_dssp EEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCB---CCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-
T ss_pred ccccccccceeeeeccccccccccccccccceeeeeec-ccCcc---cCCCccccccccccccccccccCChhhhHHHh-
Confidence 99999999988777666555555555555555555444 44443 4578889887765 566778999999999988
Q ss_pred cCCCCcceEeeCcEEEEccCCeEEEEecCCCeEEcCCeeeecchHHHHHHhcCcccceEEEEecCCC---ceEEEEEEcC
Q 004961 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (721)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~---~~~~A~vv~~ 630 (721)
.| |||+|||+|++|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++
T Consensus 377 --~~--g~~~TgD~g~~~~dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~ 451 (503)
T d3cw9a1 377 --QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451 (503)
T ss_dssp --ET--TEEEEEEEEEECTTSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred --cC--CceecccccccccCCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeC
Confidence 67 89999999999999999999999999998 5999999999999999999999999998755 3699999987
Q ss_pred hHHHHHHHHHhCCCcccHHHHhcCHHHHHHHHHHHHHHHHHCCCCCCccccEEEeeCCCCCCCCCccCcccccChHHHHH
Q 004961 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 710 (721)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~gKi~R~~l~~ 710 (721)
.+. ..+ .++|++++++.+||+|++|+.|++++++ | +|++|||+|++|++
T Consensus 452 ~~~----------~~~---------------~~~l~~~~~~~~l~~~~~P~~i~~v~~~--P----~t~~GKi~R~~L~~ 500 (503)
T d3cw9a1 452 LGE----------TLS---------------ADALDTFCRSSELADFKRPKRYFILDQL--P----KNALNKVLRRQLVQ 500 (503)
T ss_dssp TTC----------CCC---------------HHHHHHHHHHSSSCGGGSCSEEEECSCC--C----BCTTSCBCHHHHHH
T ss_pred CCC----------CCC---------------HHHHHHHHHhcCCCCCCCccEEEEECCC--C----cCCCcCccHHHHHH
Confidence 542 111 2677888865899999999999999997 6 99999999999998
Q ss_pred HH
Q 004961 711 KF 712 (721)
Q Consensus 711 ~~ 712 (721)
++
T Consensus 501 ~~ 502 (503)
T d3cw9a1 501 QV 502 (503)
T ss_dssp HH
T ss_pred hc
Confidence 75
|