BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004964
(721 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 740
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/742 (84%), Positives = 671/742 (90%), Gaps = 23/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL+GV+NENPLSYL+SID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR++V
Sbjct: 61 SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFSLDDID 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVLESFVRPAVLITDAYNAL NQPPRQQR E + I KTL AGGNVLLPVD+A
Sbjct: 181 RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +WA LNYPI+FLTYVSSSTIDYVKSFLEWM DSI KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQFWAHRLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LLKHVTLLINK+ELDNAP+ PK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQFG
Sbjct: 301 LLKHVTLLINKNELDNAPNVPKVVLASMASLEAGFSHDIFVEWAADVKNLVLFTERGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQADPPPKAVKVTMSRRVPLVG+ELIAYEEEQ RLKKEE L AS++KEEE+K S
Sbjct: 361 TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELNASMIKEEEAKVSH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
GPD+NLS DPM+IDA+N NAS D V G YRDIL DGFVPPSTSVAPMFPFYEN +EW
Sbjct: 421 GPDSNLS-DPMIIDASNNNASLDAVGSQGTGYRDILFDGFVPPSTSVAPMFPFYENTTEW 479
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGEVINPDDY+IKD+DMDQ MH+GGD DGK DEGSAS ILD KPSKVVS+ELTVQVK
Sbjct: 480 DDFGEVINPDDYVIKDDDMDQP-MHVGGDIDGKFDEGSASWILDTKPSKVVSSELTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C LI++DYEGR+DGRSIK+IL+HVAPLKLVLVHGSAE+TEHLKQHCLKHVCPHVY PQIE
Sbjct: 539 CSLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD+EIAWVDAEVGKTE+ LSLLPIST APP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDFEIAWVDAEVGKTESDALSLLPISTSAPP 658
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGGGSGTQQIVI
Sbjct: 659 HKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNINQKGGGSGTQQIVI 718
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 EGPLCEDYYKIREYLYSQFYLL 740
>gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa]
gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa]
Length = 740
Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/741 (82%), Positives = 663/741 (89%), Gaps = 21/741 (2%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
S+ D LHLGALP+AMKQ GL+APVFSTEPVYRLGLLTMYDQ SR++V
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYDQSFSRKAVSEFDLFSLDDID 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNFTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVLESF RPAVLITDAYNAL++QP RQQR+ F + I KTL GGNVLLPVDSAG
Sbjct: 181 RHLNGTVLESFYRPAVLITDAYNALNSQPSRQQRDKQFLETILKTLEGGGNVLLPVDSAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLLILE +W + LNYPI+FL+YVSSSTIDY+KSFLEWM DSI KSFETSRDNAFL
Sbjct: 241 RVLELLLILEQFWGQRFLNYPIFFLSYVSSSTIDYIKSFLEWMSDSIAKSFETSRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+KHVTLLI+K ELDNA GPK+VLAS+ASLEAGFSHDIF EWA+DVKNLVLFTERGQFGT
Sbjct: 301 MKHVTLLISKDELDNASTGPKVVLASVASLEAGFSHDIFAEWAADVKNLVLFTERGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVK+TMSRRVPLVG+ELIAYEEEQ RLK+EE LKASL+KEEESK S G
Sbjct: 361 LARMLQADPPPKAVKMTMSRRVPLVGDELIAYEEEQKRLKREEELKASLIKEEESKVSHG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
PDNNLS DPMVID+ N ++ DVV G +RDILIDGFVPPSTSVAPMFPFYEN+ EWD
Sbjct: 421 PDNNLS-DPMVIDSGNTHSPLDVVGSRGSGHRDILIDGFVPPSTSVAPMFPFYENSLEWD 479
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 520
+FGEVINPDDY+++DEDMDQAAMH+G D DGKLDEGSASLILD KPSKVVSNELTVQVKC
Sbjct: 480 EFGEVINPDDYVVQDEDMDQAAMHVGADIDGKLDEGSASLILDTKPSKVVSNELTVQVKC 539
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 580
LI++DYEGR+DGRSIK+IL+HVAPLKLV+VHGSAEATEHLKQH L VY PQIEE
Sbjct: 540 SLIYMDYEGRSDGRSIKSILTHVAPLKLVMVHGSAEATEHLKQHFLNIKNVQVYAPQIEE 599
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 640
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE+AWVDAEVGKTENGMLSLLPIS+PAPPH
Sbjct: 600 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTENGMLSLLPISSPAPPH 659
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
KSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGG SGTQQI+IE
Sbjct: 660 KSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNPSQKGGASGTQQIIIE 719
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
GPLCEDYYKIR YLYSQFYLL
Sbjct: 720 GPLCEDYYKIREYLYSQFYLL 740
>gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cucumis sativus]
Length = 738
Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/741 (82%), Positives = 667/741 (90%), Gaps = 23/741 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVS+D FNFLIDCGWNDHFDP+LLQPLS+VASTIDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ+++R+ V
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT+LESFVRPAVLITDAYNAL+NQP R+Q++ F D I KTLRA GNVLLPVD+AG
Sbjct: 181 RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+ ILE YW E SLNYPI+FLTYV+SSTIDY+KSFLEWM D+I KSFE +R+NAFL
Sbjct: 241 RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LKHVTLLINKSELDNAPDGPK+VLASMASLEAG+SHDIFV+WA D KNLVLF+ERGQFGT
Sbjct: 301 LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVKVT+S+RVPL G+ELIAYEEEQ R KKEEALKASL+KEE+SKAS G
Sbjct: 361 LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-KKEEALKASLLKEEQSKASHG 419
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
DN+ +GDPM+IDA+ +N + DV HGG YRDILIDGFVPPST VAPMFPFYEN S WD
Sbjct: 420 ADND-TGDPMIIDAS-SNVAPDVGSSHGGAYRDILIDGFVPPSTGVAPMFPFYENTSAWD 477
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 520
DFGEVINPDDY+IKDEDMDQAAMH GGD DGKLDE +A+LILD KPSKVVSNELTVQVKC
Sbjct: 478 DFGEVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKC 537
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 580
L ++D+EGR+DGRSIK+ILSHVAPLKLVLVHG+AEATEHLKQHCLK+VCPHVY PQIEE
Sbjct: 538 SLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEE 597
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 640
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI W+DAEVGKTENG LSLLP+S PH
Sbjct: 598 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEITWLDAEVGKTENGTLSLLPLSKAPAPH 657
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
KSVLVGDLKMAD K FL+SKGIQVEFAGGALRCGEYVT+RKV A QKGGGSGTQQ+VIE
Sbjct: 658 KSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIE 717
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
GPLCEDYYKIR LYSQFYLL
Sbjct: 718 GPLCEDYYKIRELLYSQFYLL 738
>gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 736
Score = 1241 bits (3210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/741 (82%), Positives = 663/741 (89%), Gaps = 25/741 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SH DTLHLGALPYAMK+LGLSAPV+STEPVYRLGLLTMYDQYLSR+
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
SVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + F D + KTLRAGGNVLLPVD+ G
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLRAGGNVLLPVDTVG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N FL
Sbjct: 241 RVLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQF T
Sbjct: 301 LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFAT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVKV +S+RVPLVGEELIAYEEEQ R+KKE ALKASL+KEEE K S G
Sbjct: 361 LARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKE-ALKASLMKEEELKTSHG 419
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
DN++S DPMVID+ N + DV P GG YRDI IDGFVPPSTSVAP+FP YEN SEWD
Sbjct: 420 ADNDIS-DPMVIDSGNNH---DVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTSEWD 475
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 520
DFGEVINPDDY+IKDEDMDQ AMH G D +GKLDEG+ASLILD KPSKVVS+E TVQV+C
Sbjct: 476 DFGEVINPDDYVIKDEDMDQTAMHGGSDINGKLDEGAASLILDTKPSKVVSDERTVQVRC 535
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 580
L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQIEE
Sbjct: 536 SLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEE 595
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 640
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA VGKTEN LSLLP+S APPH
Sbjct: 596 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDPLSLLPVSGAAPPH 655
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
KSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQIVIE
Sbjct: 656 KSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIE 715
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
GPLCEDYYKIR YLYSQFYLL
Sbjct: 716 GPLCEDYYKIRDYLYSQFYLL 736
>gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 738
Score = 1234 bits (3193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/740 (81%), Positives = 656/740 (88%), Gaps = 21/740 (2%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPSLLQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
SVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + F D + KTLR GGNVLLPVD+ G
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLREGGNVLLPVDTVG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+L+LE YW + +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N FL
Sbjct: 241 RVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSH+IFVEWA+DVKNLVLFTERGQF T
Sbjct: 301 LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTERGQFAT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVKV +S+RV LVGEELIAYEEEQ R+KKE ALKASL+KEEE K S G
Sbjct: 361 LARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKE-ALKASLMKEEEFKTSHG 419
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
DNN S D MVID+ N + +V P GG YRDI IDGFVPP TSVAPMFP YEN SEWD
Sbjct: 420 ADNNTS-DSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYENTSEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 521
DFGEVINPDDY+IKDEDMDQ AMH G +GKLDEG+ASLILD KPSKVVS+E TVQV+C
Sbjct: 479 DFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERTVQVRCS 538
Query: 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEET 581
L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQ+EET
Sbjct: 539 LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQLEET 598
Query: 582 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHK 641
IDVTSDLCAYKV LSEKLMSNVLFKKLGDYE+AWVDA VGKTEN LSLLP+S APPHK
Sbjct: 599 IDVTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSGAAPPHK 658
Query: 642 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
SVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQIVIEG
Sbjct: 659 SVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEG 718
Query: 702 PLCEDYYKIRAYLYSQFYLL 721
PLCEDYYKIR YLYSQFYLL
Sbjct: 719 PLCEDYYKIRDYLYSQFYLL 738
>gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 742
Score = 1234 bits (3192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/744 (81%), Positives = 663/744 (89%), Gaps = 25/744 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SH DTLHLGALPYAMK+LGLSAPV+STEPVYRLGLLTMYDQYLSR+
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
SVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ--REMFQDAIS--KTLRAGGNVLLPVD 218
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q +E + + KTLRAGGNVLLPVD
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLKTLRAGGNVLLPVD 240
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
+ GRVLEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N
Sbjct: 241 TVGRVLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTREN 300
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
FLLK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQ
Sbjct: 301 IFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQ 360
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 398
F TLARMLQADPPPKAVKV +S+RVPLVGEELIAYEEEQ R+KKE ALKASL+KEEE K
Sbjct: 361 FATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKE-ALKASLMKEEELKT 419
Query: 399 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 458
S G DN++S DPMVID+ N + +V P GG YRDI IDGFVPPSTSVAP+FP YEN S
Sbjct: 420 SHGADNDIS-DPMVIDSGNNHVPPEVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTS 478
Query: 459 EWDDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQ 517
EWDDFGEVINPDDY+IKDEDMDQ AMH G D +GKLDEG+ASLILD KPSKVVS+E TVQ
Sbjct: 479 EWDDFGEVINPDDYVIKDEDMDQTAMHGGSDINGKLDEGAASLILDTKPSKVVSDERTVQ 538
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQ 577
V+C L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQ
Sbjct: 539 VRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQ 598
Query: 578 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPA 637
IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA VGKTEN LSLLP+S A
Sbjct: 599 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDPLSLLPVSGAA 658
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
PPHKSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQI
Sbjct: 659 PPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQI 718
Query: 698 VIEGPLCEDYYKIRAYLYSQFYLL 721
VIEGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 VIEGPLCEDYYKIRDYLYSQFYLL 742
>gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Vitis vinifera]
gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 1231 bits (3184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/741 (81%), Positives = 662/741 (89%), Gaps = 21/741 (2%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSFLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
+HPDTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+
Sbjct: 61 AHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSDFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
+VTRLTYSQNYHL GKGEGIV+APHVAGHLLGGTVWKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQNVTRLTYSQNYHLFGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+ LNGTVLESFVRPAVLITDAYNAL+NQP R+QR+ F D I KTLR GNVLLPVD+AG
Sbjct: 181 RLLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDVILKTLRGDGNVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+LILE YW +H LNYPI+FLTYV+SSTIDYVKSFLEWM DSI KSFE +RDNAFL
Sbjct: 241 RVLELMLILEQYWTQHHLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LKHVTLLI+KSEL+ PDGPK+VLASMASLEAGFSHDIFVEWA+D KNLVLF+ERGQF T
Sbjct: 301 LKHVTLLISKSELEKVPDGPKIVLASMASLEAGFSHDIFVEWATDAKNLVLFSERGQFAT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVKVTMS+RVPLVGEEL AYEEEQ R+KKEEALKASL KE+E KAS G
Sbjct: 361 LARMLQADPPPKAVKVTMSKRVPLVGEELAAYEEEQERIKKEEALKASLSKEDEMKASRG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
DN L GDPMVID AS+DV PH G +RDILIDGFVPPSTSVAPMFPFYEN+SEWD
Sbjct: 421 SDNKL-GDPMVIDTTTPPASSDVAVPHVGGHRDILIDGFVPPSTSVAPMFPFYENSSEWD 479
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 520
DFGEVINP+DY+IKDEDMDQA M +G D +GKLDEG+ASLI D PSKV+SNELTVQVKC
Sbjct: 480 DFGEVINPEDYVIKDEDMDQATMQVGDDLNGKLDEGAASLIFDTTPSKVISNELTVQVKC 539
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 580
+L+++D+EGR+DGRSIK+ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQI E
Sbjct: 540 MLVYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIGE 599
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 640
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE+AWVDAEVGKTE+G LSLLP+STP P H
Sbjct: 600 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTESGSLSLLPLSTPPPSH 659
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
+V VGD+KMAD K FL+SKGIQVEF+GGALRCGEYVT+RKVG A QKGGG+ QQIV+E
Sbjct: 660 DTVFVGDIKMADFKQFLASKGIQVEFSGGALRCGEYVTLRKVGDASQKGGGAIIQQIVME 719
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
GPLC++YYKIR YLYSQ+YLL
Sbjct: 720 GPLCDEYYKIREYLYSQYYLL 740
>gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 743
Score = 1227 bits (3175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/746 (80%), Positives = 656/746 (87%), Gaps = 28/746 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPSLLQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
SVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-------MFQDAISKTLRAGGNVLL 215
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + +F I KTLR GGNVLL
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLVI-KTLREGGNVLL 239
Query: 216 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
PVD+ GRVLEL+L+LE YW + +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +
Sbjct: 240 PVDTVGRVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKT 299
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
R+N FLLK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSH+IFVEWA+DVKNLVLFTE
Sbjct: 300 RENIFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTE 359
Query: 336 RGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
RGQF TLARMLQADPPPKAVKV +S+RV LVGEELIAYEEEQ R+KKE ALKASL+KEEE
Sbjct: 360 RGQFATLARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKE-ALKASLMKEEE 418
Query: 396 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 455
K S G DNN S D MVID+ N + +V P GG YRDI IDGFVPP TSVAPMFP YE
Sbjct: 419 FKTSHGADNNTS-DSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYE 477
Query: 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT 515
N SEWDDFGEVINPDDY+IKDEDMDQ AMH G +GKLDEG+ASLILD KPSKVVS+E T
Sbjct: 478 NTSEWDDFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERT 537
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 575
VQV+C L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY
Sbjct: 538 VQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYA 597
Query: 576 PQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIST 635
PQ+EETIDVTSDLCAYKV LSEKLMSNVLFKKLGDYE+AWVDA VGKTEN LSLLP+S
Sbjct: 598 PQLEETIDVTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSG 657
Query: 636 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 695
APPHKSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG Q
Sbjct: 658 AAPPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQ 717
Query: 696 QIVIEGPLCEDYYKIRAYLYSQFYLL 721
QIVIEGPLCEDYYKIR YLYSQFYLL
Sbjct: 718 QIVIEGPLCEDYYKIRDYLYSQFYLL 743
>gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
Length = 739
Score = 1192 bits (3084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/743 (78%), Positives = 654/743 (88%), Gaps = 26/743 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VAS+IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SHPDTLHLGALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
G D+N S +PMVID + DVV HG Y+DILIDGFVPPS+SVAPMFPFY+N SEW
Sbjct: 421 GSDDN-SSEPMVIDTKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPFYDNTSEW 476
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVISNELIVTVS 536
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE+ M SLLP+S A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTESDMRSLLPMSGAASP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 698
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 699 IEGPLCEDYYKIRAYLYSQFYLL 721
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=AtCPSF100;
Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO
DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING
PHENOTYPE 5
gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis
thaliana]
gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
Length = 739
Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/743 (77%), Positives = 651/743 (87%), Gaps = 26/743 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
G D+N S +PM+ID + DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 698
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 699 IEGPLCEDYYKIRAYLYSQFYLL 721
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|9082326|gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
[Arabidopsis thaliana]
Length = 739
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/743 (77%), Positives = 650/743 (87%), Gaps = 26/743 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PL +VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
G D+N S +PM+ID + DVV HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 698
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 699 IEGPLCEDYYKIRAYLYSQFYLL 721
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|115480769|ref|NP_001063978.1| Os09g0569400 [Oryza sativa Japonica Group]
gi|75253249|sp|Q652P4.1|CPSF2_ORYSJ RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|52077178|dbj|BAD46223.1| putative cleavage and polyadenylation specificity factor [Oryza
sativa Japonica Group]
gi|113632211|dbj|BAF25892.1| Os09g0569400 [Oryza sativa Japonica Group]
Length = 738
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/742 (71%), Positives = 616/742 (83%), Gaps = 25/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRR V+
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGKT++ + L P STPA
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPA-A 657
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G AGQK G +G+QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGSQQIVI 716
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQFYLL
Sbjct: 717 EGPLCEDYYKIRELLYSQFYLL 738
>gi|357160194|ref|XP_003578687.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/742 (70%), Positives = 619/742 (83%), Gaps = 25/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW DH DPSLLQPL++VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV+ TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYVTEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQN+ L+ KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+NQ RQQ + F D++ K L +GG+VLLPVD+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLASGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLLI+E YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTVDYVKSFLEWMSDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
L++V+L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ KNLVLFTE+GQFGT
Sbjct: 301 LRYVSLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTM +R+PLVG+EL AYEEEQ R+KKEE LKASL K+EE KAS G
Sbjct: 361 LARMLQVDPPPKAVKVTMGKRIPLVGDELKAYEEEQERIKKEELLKASLSKDEELKASHG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMV+DA+++ S++ GG DILIDGFVP +TSVAPMFPF+EN ++WD
Sbjct: 421 -SNAKASDPMVVDASSSRKSSNAGSHVGGNV-DILIDGFVPSTTSVAPMFPFFENTADWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINPDDY++K ++MD M GD DGKLDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQDEMDNNMMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLVYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGK + L+LLP S+
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKVDEK-LNLLPPSSTPSA 657
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G + +QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTVSQQIVI 716
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQF+LL
Sbjct: 717 EGPLCEDYYKIRELLYSQFFLL 738
>gi|357127861|ref|XP_003565596.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/742 (70%), Positives = 619/742 (83%), Gaps = 25/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW DH DPSLLQPL++VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQN+ L+ KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+NQ RQQ + F D++ K L +GG+VLLPVD+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLASGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLLI+E YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTVDYVKSFLEWMSDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
L++V+L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ KNLVLFTE+GQFGT
Sbjct: 301 LRYVSLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTM +R+PLVG+EL AYEEEQ R+KKEE LKASL K+EE KAS G
Sbjct: 361 LARMLQVDPPPKAVKVTMGKRIPLVGDELKAYEEEQERIKKEELLKASLSKDEELKASHG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMV+DA+++ S++ GG DILIDGFVP +TS APMFPF+EN ++WD
Sbjct: 421 -SNAKASDPMVVDASSSRKSSNAGSHVGGNV-DILIDGFVPSTTSFAPMFPFFENTADWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINPDDY++K ++MD M GD DGKLDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQDEMDNNMMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGK + L+LLP S+
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKVDEK-LNLLPPSSTPSA 657
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G +G+QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTGSQQIVI 716
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQF+LL
Sbjct: 717 EGPLCEDYYKIRELLYSQFFLL 738
>gi|218202664|gb|EEC85091.1| hypothetical protein OsI_32459 [Oryza sativa Indica Group]
Length = 1195
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/736 (71%), Positives = 608/736 (82%), Gaps = 29/736 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRR V+
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGKT++ + L P STPA
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPA-A 657
Query: 640 HKSVLVGDLKMADLKPFLSSKG----IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 695
HKSVLVGDLK+AD K FL++KG +QVEFAGGALRCGEY+T+RK+G AGQK G +G+Q
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLRDFLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGSQ 716
Query: 696 QIVIEGPLCEDYYKIR 711
QIVIEGPLCEDYYKI+
Sbjct: 717 QIVIEGPLCEDYYKIQ 732
>gi|242037469|ref|XP_002466129.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
gi|241919983|gb|EER93127.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
Length = 738
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/742 (71%), Positives = 618/742 (83%), Gaps = 25/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQNY L+ KGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F D++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIDSLIKVLATGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWM D I KSFE++R NAFL
Sbjct: 241 RVLELLLLLDTYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMRDQIAKSFESNRANAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK V L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGT
Sbjct: 301 LKKVMLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKE+ALKASLVKEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEKALKASLVKEEELKASLG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMVIDA+++ SA+ GG DILIDGFVPPSTSVAPMFPF+EN +EWD
Sbjct: 421 S-NAKASDPMVIDASSSRKSANAGSHFGGN-TDILIDGFVPPSTSVAPMFPFFENTAEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINPDDY++K E+MD M GD DGK+D+GSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGKIDDGSARLLLDSTPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K++ HV+ PQIE
Sbjct: 539 CSLVYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCTKNLDLHVHAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPP 657
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HK VLVGDLK++D K FL +KG QVEFAGGALRCGEY+ +RK+G + QK G +G+QQIVI
Sbjct: 658 HKPVLVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKIGDSSQK-GSTGSQQIVI 716
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQFYLL
Sbjct: 717 EGPLCEDYYKIRELLYSQFYLL 738
>gi|326495752|dbj|BAJ85972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/729 (69%), Positives = 602/729 (82%), Gaps = 25/729 (3%)
Query: 14 FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73
+ E PL YL+++DGF FL+DCGW DH DP+LLQPL++VA TIDAVLLSHPD +HLGALPY
Sbjct: 2 YGEGPLCYLLAVDGFRFLLDCGWTDHCDPALLQPLARVAPTIDAVLLSHPDMMHLGALPY 61
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR------------------RSVTRLTYSQ 115
A+K LGLSAPV++TEPVYRLGLLTMYD +LSR ++V RL YSQ
Sbjct: 62 AIKHLGLSAPVYATEPVYRLGLLTMYDYFLSRWQVADFDLFSLDDIDAAFQNVARLKYSQ 121
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N+ L KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE+HLNGT L SFVR
Sbjct: 122 NHLLKDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKERHLNGTTLGSFVR 181
Query: 176 PAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
PAVLITDAYNAL+NQ RQQ + F D++ K L GG+VLLPVD+AGRVLELLL +E YW
Sbjct: 182 PAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLSGGGSVLLPVDTAGRVLELLLTMEQYW 241
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
A+ L YPIYFLT VS+ST+D+VKSFLEWM DSI+KSFE +RDNAFLL+HV+L+INK EL
Sbjct: 242 AQRHLVYPIYFLTNVSTSTVDFVKSFLEWMSDSISKSFEHTRDNAFLLRHVSLIINKEEL 301
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 354
+ D PK+VLASM+SLE GFSHDIFVE A++ KNLVLFTE+GQFGTLARMLQ DPPPKA
Sbjct: 302 EKLGDAPKVVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKA 361
Query: 355 VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVID 414
VKVTMS+RVPLVG+EL AYEEEQ R+KKEE LKASL KE+E KAS N + DPMV+D
Sbjct: 362 VKVTMSKRVPLVGDELKAYEEEQERIKKEEVLKASLSKEKELKAS-HESNAKASDPMVVD 420
Query: 415 ANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 474
A+ + S++ GG DILIDGFV P+TS+APMFPF+EN ++WDDFGEVINPDDY++
Sbjct: 421 ASLSRKSSNAGSHVGGNV-DILIDGFVSPATSIAPMFPFFENTADWDDFGEVINPDDYMM 479
Query: 475 KDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
K +++D M GD DGKLDEGSA L+LD+ PSKV+SNELTVQVKC L ++D+EGR+D
Sbjct: 480 KQDEVDNNMMLGVGDGMDGKLDEGSARLLLDSAPSKVISNELTVQVKCSLAYMDFEGRSD 539
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 592
GRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQ+EETIDVTSDLCAYK
Sbjct: 540 GRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQLEETIDVTSDLCAYK 599
Query: 593 VQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMAD 652
VQLSEKLMSNV+ KKLG++EIAWVDA VGK + LSL+P S+ H SVLVGDLK+AD
Sbjct: 600 VQLSEKLMSNVISKKLGEHEIAWVDAGVGKADE-KLSLVPPSSIPAAHNSVLVGDLKLAD 658
Query: 653 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G +G+QQIVIEGPLCEDYYKIR
Sbjct: 659 FKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTGSQQIVIEGPLCEDYYKIRE 717
Query: 713 YLYSQFYLL 721
LYSQF+LL
Sbjct: 718 LLYSQFFLL 726
>gi|219886123|gb|ACL53436.1| unknown [Zea mays]
gi|414881946|tpg|DAA59077.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 1 [Zea mays]
gi|414881947|tpg|DAA59078.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 2 [Zea mays]
gi|414881948|tpg|DAA59079.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 3 [Zea mays]
Length = 737
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/742 (70%), Positives = 615/742 (82%), Gaps = 26/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK VTL+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGT
Sbjct: 301 LKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE KAS G
Sbjct: 361 LARMLQVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEELKASHG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+EN +EWD
Sbjct: 421 -SNTKASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFENTAEWD 477
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 478 DFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNEMTVQVK 537
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+++D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HVY PQIE
Sbjct: 538 CSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHVYAPQIE 597
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PP
Sbjct: 598 ETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HK VLVGDLK++D K FL +KG QVEFAGGALRCGEY+ +RKVG + K G +G+QQIVI
Sbjct: 657 HKPVLVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILK-GSTGSQQIVI 715
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQFYLL
Sbjct: 716 EGPLCEDYYKIRELLYSQFYLL 737
>gi|414881949|tpg|DAA59080.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 766
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/771 (67%), Positives = 616/771 (79%), Gaps = 55/771 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ--- 338
LK VTL+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQ
Sbjct: 301 LKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQKIF 360
Query: 339 ---FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
FGTLARMLQ DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE
Sbjct: 361 ALQFGTLARMLQVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEE 420
Query: 396 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 455
KAS G N + +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+E
Sbjct: 421 LKASHGS-NTKASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFE 477
Query: 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNE 513
N +EWDDFGEVINPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE
Sbjct: 478 NTAEWDDFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNE 537
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 573
+TVQVKC L+++D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HV
Sbjct: 538 MTVQVKCSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHV 597
Query: 574 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPI 633
Y PQIEETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP
Sbjct: 598 YAPQIEETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPP 656
Query: 634 STPAPPHKSVLVGDLKMADLKPFLSSKG-----------------------IQVEFAGGA 670
S+ PPHK VLVGDLK++D K FL +KG +QVEFAGGA
Sbjct: 657 SSTPPPHKPVLVGDLKLSDFKQFLENKGWQDFSVERERIKYVEIQSLRKELLQVEFAGGA 716
Query: 671 LRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
LRCGEY+ +RKVG + K G +G+QQIVIEGPLCEDYYKIR LYSQFYLL
Sbjct: 717 LRCGEYIMVRKVGDSILK-GSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 766
>gi|226492345|ref|NP_001151557.1| LOC100285191 [Zea mays]
gi|195647682|gb|ACG43309.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Zea mays]
Length = 673
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/677 (70%), Positives = 562/677 (83%), Gaps = 26/677 (3%)
Query: 66 LHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR------------------RS 107
+HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR ++
Sbjct: 2 MHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVDAAFQN 61
Query: 108 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 167
V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE+HLNG
Sbjct: 62 VVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKERHLNG 121
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLEL 226
TVL SFVRPAVLITDAYNAL+NQ R++++ F D++ K L GG+VLLPVD+AGRVLEL
Sbjct: 122 TVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIDSLIKVLATGGSVLLPVDTAGRVLEL 181
Query: 227 LLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
LL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFLLK VT
Sbjct: 182 LLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFLLKKVT 241
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGTLARML
Sbjct: 242 LIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGTLARML 301
Query: 347 QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNL 406
Q DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE KAS G N
Sbjct: 302 QVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEELKASHGS-NTK 360
Query: 407 SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEV 466
+ +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+EN +EWDDFGEV
Sbjct: 361 ASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFENTAEWDDFGEV 418
Query: 467 INPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIF 524
INPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE+TVQVKC L++
Sbjct: 419 INPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNEMTVQVKCSLVY 478
Query: 525 IDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584
+D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HVY PQIEETIDV
Sbjct: 479 MDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHVYAPQIEETIDV 538
Query: 585 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVL 644
TSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PPHK VL
Sbjct: 539 TSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPPHKPVL 597
Query: 645 VGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLC 704
VGDLK++D K FL +KG QVEFAGGALRCGEY+ +RKVG + K G +G+QQIVIEGPLC
Sbjct: 598 VGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILK-GSTGSQQIVIEGPLC 656
Query: 705 EDYYKIRAYLYSQFYLL 721
EDYYKIR LYSQFYLL
Sbjct: 657 EDYYKIRELLYSQFYLL 673
>gi|222642134|gb|EEE70266.1| hypothetical protein OsJ_30409 [Oryza sativa Japonica Group]
Length = 1073
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/628 (71%), Positives = 516/628 (82%), Gaps = 23/628 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRR V+
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
ETIDVTSDLCAYKVQLSEKLMSNV+ KK
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKK 626
>gi|168010331|ref|XP_001757858.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691134|gb|EDQ77498.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 724
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/751 (58%), Positives = 541/751 (72%), Gaps = 57/751 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG +E PL YL+ +DGF FL+DCGW D FD SLL+PL VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAHSEAPLCYLLQVDGFRFLLDCGWTDSFDLSLLEPLKSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
S+PDT+HLGA YA +LGL A ++ T PV+ +G + MYD LSR++V+
Sbjct: 61 SYPDTIHLGAFTYAFAKLGLQATMYCTLPVHHMGQMYMYDHVLSRKAVSNFDLFTLDDVD 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
+L Y Q+Y L GKGEG+ + P+ AGHLLGGT+WKITKD E++IYAVD+N RKE
Sbjct: 121 TSFANSVQLKYQQHYQLQGKGEGMTITPYAAGHLLGGTIWKITKDTEEIIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLN TVLE+FVRPAVLITDAYNAL+NQPPR+QR+ F D I K LRA GNVLLPV++AG
Sbjct: 181 RHLNKTVLENFVRPAVLITDAYNALNNQPPRKQRDQEFIDMILKVLRAEGNVLLPVETAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+L LE WA L+YP+ LT VS ST+++ KS LEWM DSI +SF +SR+N+FL
Sbjct: 241 RVLELILHLESNWAHQRLSYPVALLTNVSYSTVEFAKSLLEWMSDSIARSFGSSRENSFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK++ L ++ E D P GPK+V ASMASLE GF+ D+FVEWA+D +NLVLFTERGQ GT
Sbjct: 301 LKYLKLCHDRKEFDELPSGPKVVFASMASLEGGFARDLFVEWATDSRNLVLFTERGQMGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKE-----EES 396
LA+ LQA+PPPK VKVTMS+++PL GEEL AYE EQ RLK + LV+E E+
Sbjct: 361 LAKKLQAEPPPKIVKVTMSQKIPLTGEELQAYELEQ-RLKMATETEVDLVEEVGPNSPEA 419
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
KA GP +P A N S R ILIDGF + PMFP YEN
Sbjct: 420 KAVTGPLPLTVAEP----ATNEIPSQ----------RQILIDGFTASDKTAGPMFPLYEN 465
Query: 457 NSEWDDFGEVINPDDYIIKDEDM-----DQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
S+WD++GEVINP+DY ++D +M Q A +D E A IL +PSKVV
Sbjct: 466 PSDWDEYGEVINPEDYRVEDTEMMDYQSSQQAPVADVEDNTDQEAEA--ILADRPSKVVV 523
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
+ TV VKC L ++D+EGR+DGRSIK IL+HVAP+KLVLVHGSAEATEHL+QHC+K+VC
Sbjct: 524 KDYTVYVKCALYYMDFEGRSDGRSIKNILAHVAPIKLVLVHGSAEATEHLRQHCVKNVCR 583
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN-GMLSL 630
VY P+I ET DVTSDLCAYKV+L+E+LMS+VLF+KLGDYE+AW+D E+G E+ GML L
Sbjct: 584 DVYAPRIGETQDVTSDLCAYKVRLTERLMSSVLFRKLGDYEVAWIDGEIGSQESEGMLPL 643
Query: 631 LPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 690
LP TP PPHKSV VGDL++AD K L++KGIQ EFAGG LRCG+ +R+ G
Sbjct: 644 LPSETP-PPHKSVFVGDLRLADFKQLLATKGIQAEFAGGVLRCGDAFAVRRSG------- 695
Query: 691 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G+QQ+VIEGPL E+YYK+R LYSQFY+L
Sbjct: 696 --GSQQLVIEGPLSEEYYKLRDLLYSQFYML 724
>gi|449528453|ref|XP_004171219.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2-like, partial [Cucumis
sativus]
Length = 501
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/504 (80%), Positives = 449/504 (89%), Gaps = 22/504 (4%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVS+D FNFLIDCGWNDHFDP+LLQPLS+VASTIDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ+++R+ V
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT+LESFVRPAVLITDAYNAL+NQP R+Q++ F D I KTLRA GNVLLPVD+AG
Sbjct: 181 RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLEL+ ILE YW E SLNYPI+FLTYV+SSTIDY+KSFLEWM D+I KSFE +R+NAFL
Sbjct: 241 RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LKHVTLLINKSELDNAPDGPK+VLASMASLEAG+SHD FV+WA D KNLVLF+ERGQFGT
Sbjct: 301 LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDXFVDWAMDAKNLVLFSERGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQADPPPKAVKVT+S+RVPL G+ELIAYEEEQ R KKEEALKASL+KEE+SKAS G
Sbjct: 361 LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-KKEEALKASLLKEEQSKASHG 419
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
DN+ +GDPM+IDA ++N + DV HGG YRDILIDGFVPPST VAPMFPFYEN S WD
Sbjct: 420 ADND-TGDPMIIDA-SSNVAPDVGSSHGGAYRDILIDGFVPPSTGVAPMFPFYENTSAWD 477
Query: 462 DFGEVINPDDYIIKDEDMDQAAMH 485
DFGEVINPDDY+IKDEDMDQAAMH
Sbjct: 478 DFGEVINPDDYVIKDEDMDQAAMH 501
>gi|302776792|ref|XP_002971541.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
gi|300160673|gb|EFJ27290.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
Length = 721
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/747 (55%), Positives = 544/747 (72%), Gaps = 52/747 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQ+TPL+G +E PL YL+ +D F FL+DCGWND FD SLLQPL VA TIDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTR---------- 110
SH DTLHLGALPYA+ +LGL+A V+ T P+ +G + MYD LSR +V+
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYDHCLSRTAVSHFDLFSLDDVD 120
Query: 111 --------LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
L YSQ++ L GKG+GI + P A LLGGT+WKITKD ED+IYAVD+N RKE
Sbjct: 121 TAFSNTCPLKYSQHFPLQGKGQGITITPFPAARLLGGTIWKITKDTEDIIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLN TVLESF RPAVLITDAYNAL++QP R+QR+ F D I +TLR+ GNVLLPV+ +G
Sbjct: 181 RHLNATVLESFTRPAVLITDAYNALNSQPVRRQRDQEFLDIILRTLRSSGNVLLPVEPSG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE++L L+ +W++H +N P+ FLTYV S D+VKS LEWM D+I K+FE +R+N F
Sbjct: 241 RVLEIILYLDQHWSQHRINVPLVFLTYVVGSVTDFVKSSLEWMNDAIGKAFEQNRENPFA 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
L+ V L ++ +LD P GP++VLASMASLE GF+ ++F+EWA D KNLVLFTER Q GT
Sbjct: 301 LRSVKLCTSRKQLDELPPGPRVVLASMASLETGFAKELFLEWAVDPKNLVLFTERAQVGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LAR LQ +PPPK VK+T+S++V LVGEEL AYE EQ+RL+ EEA A+ +E AS
Sbjct: 361 LARQLQVEPPPKIVKITISKKVLLVGEELEAYEREQSRLR-EEARNAASQQEPVQPAS-- 417
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGR------YRDILIDGFVPPSTSVAPMFPFYE 455
S D ++ A + +++ P G+ + DI IDGF P+ +VAPMFP Y+
Sbjct: 418 -----SSDDLMPSAPDESST-----PSEGKQQAVTVHHDIFIDGFTVPADTVAPMFPVYD 467
Query: 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD-EGSASLILDAKPSKVVSNEL 514
+++E D++GE+INPDD++IK+E MD + ++ KL+ EG S KPSKVV+ +
Sbjct: 468 DSNERDEYGEIINPDDFVIKEEFMDYSQTQANANNIKLETEGDTSA---EKPSKVVTTDT 524
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
V C L F+D+EGRADGRSIK+IL+HVAPLKLVL+HGSAE+TEHLKQHCLK+VCP VY
Sbjct: 525 AVVPLCALTFMDFEGRADGRSIKSILAHVAPLKLVLIHGSAESTEHLKQHCLKNVCPFVY 584
Query: 575 TPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIS 634
TP++ E ++VTSDL AYK++L+E++MS+VLF+KLGDYE+AWVD E+G+ E +L LLP+
Sbjct: 585 TPRVGENMNVTSDLNAYKLRLTERIMSSVLFRKLGDYELAWVDGEIGQNEEDLLPLLPLD 644
Query: 635 TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 694
PPHK+V VGDL++AD K L++KGIQ EFAGG LRC + + +RK SG
Sbjct: 645 GTPPPHKTVFVGDLRLADFKQLLATKGIQAEFAGGVLRCADNIAVRK----------SGG 694
Query: 695 QQIVIEGPLCEDYYKIRAYLYSQFYLL 721
QQ+VIEG L +DYYK+R LYSQ++++
Sbjct: 695 QQLVIEGSLSDDYYKVRELLYSQYHIV 721
>gi|302819854|ref|XP_002991596.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
gi|300140629|gb|EFJ07350.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
Length = 715
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/741 (55%), Positives = 536/741 (72%), Gaps = 46/741 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQ+TPL+G +E PL YL+ +D F FL+DCGWND FD SLLQPL VA TIDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTR---------- 110
SH DTLHLGALPYA+ +LGL+A V+ T P+ +G + MYD LSR +V+
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYDHCLSRTAVSHFDLFSLDDVD 120
Query: 111 --------LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
L YSQ++ L GKG+GI++ P A LLGGT+WKITKD ED+IYAVD+N RKE
Sbjct: 121 TAFSNTCPLKYSQHFPLQGKGQGIIITPFPAARLLGGTIWKITKDTEDIIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLN TVLESF RPAVLITDAYNAL++QP R+QR+ F D I +TLR+ GNVLLPV+ +G
Sbjct: 181 RHLNATVLESFTRPAVLITDAYNALNSQPVRRQRDQEFLDIILRTLRSSGNVLLPVEPSG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE++L L+ +W++H +N P+ FLTYV S D+VKS LEWM D+I K+FE +R+N F
Sbjct: 241 RVLEIILYLDQHWSQHRINVPLVFLTYVVGSVTDFVKSSLEWMNDAIGKAFEQNRENPFA 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
L+ V L ++ +L+ P GP++VLASMASLE GF+ ++F+EWA D KNLVLFTER Q GT
Sbjct: 301 LRSVKLCTSRKQLEELPPGPRVVLASMASLETGFAKELFLEWAVDPKNLVLFTERAQVGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LAR LQ +PPPK VK+T+S++V LVGEEL AYE EQ+RL +EEA A+ +E AS
Sbjct: 361 LARQLQVEPPPKIVKITISKKVLLVGEELEAYEREQSRL-REEARNAASQQEPVQPAS-- 417
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
S D M + ++ ++ + + DI IDGF P+ +VAPMFP Y++++E D
Sbjct: 418 ----SSDDLMPSSPDESSTPSEGKQQAVTVHHDIFIDGFTVPADTVAPMFPVYDDSNERD 473
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD-EGSASLILDAKPSKVVSNELTVQVKC 520
++GE+INPDD++IK+E MD + ++ KL+ EG S KPSKVV+ + V C
Sbjct: 474 EYGEIINPDDFVIKEEFMDYSQTQANANNIKLETEGDTSA---EKPSKVVTTDTAVVPLC 530
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 580
L F+D+EGRADGRSIK+IL+H VL+HGSAE+TEHLKQHCLK+VCP VYTP++ E
Sbjct: 531 ALTFMDFEGRADGRSIKSILAH------VLIHGSAESTEHLKQHCLKNVCPFVYTPRVGE 584
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 640
++VTSDL AYK++L+E++MS+VLF+KLGDYE+AWVD E+G+ E +L LLP+ PPH
Sbjct: 585 NMNVTSDLNAYKLRLTERIMSSVLFRKLGDYELAWVDGEIGQNEEDLLPLLPLDGTPPPH 644
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
K+V VGDL++AD K L++KGIQ EFAGG LRC + + +RK SG QQ+VIE
Sbjct: 645 KTVFVGDLRLADFKQLLATKGIQAEFAGGVLRCADNIAVRK----------SGGQQLVIE 694
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
G L +DYYK+R LYSQ++++
Sbjct: 695 GSLSDDYYKVRELLYSQYHIV 715
>gi|297808389|ref|XP_002872078.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
gi|297317915|gb|EFH48337.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
Length = 544
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 322/461 (69%), Positives = 368/461 (79%), Gaps = 54/461 (11%)
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT------------------RLTYSQN 116
MKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+ RLTYSQN
Sbjct: 1 MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYSQN 60
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
YHLSG+G IV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE+HLNGTVL+SFVRP
Sbjct: 61 YHLSGRG--IVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQSFVRP 118
Query: 177 AVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
AVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+AGRVLELLLILE +W
Sbjct: 119 AVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHW 178
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAFLL
Sbjct: 179 SQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLL------------ 226
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 354
SLEAGF+ +IFVEWA+D +NLVLFTE GQFGTLARMLQ+ PPPK
Sbjct: 227 ---------------SLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAPPPKF 271
Query: 355 VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVID 414
VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKE E+KAS G D+N S +PMVID
Sbjct: 272 VKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEVETKASHGSDDN-SSEPMVID 330
Query: 415 ANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 474
+ DVV HG Y+DILIDGFVPPS+SVAPMFPFY+N SEWDDFGEVINPDDY+I
Sbjct: 331 TKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPFYDNTSEWDDFGEVINPDDYVI 387
Query: 475 KDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNEL 514
KDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL
Sbjct: 388 KDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVISNEL 428
>gi|156399337|ref|XP_001638458.1| predicted protein [Nematostella vectensis]
gi|156225579|gb|EDO46395.1| predicted protein [Nematostella vectensis]
Length = 737
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/778 (37%), Positives = 444/778 (57%), Gaps = 98/778 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSG +E PL YL+ +D F FL+DCGWN+ D +++ + + +DAVL+
Sbjct: 1 MTSIIKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETLDMEIMESIKRHVQQVDAVLV 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S PD H+G LPY + + GL P+++T PVY++G + MYD Y ++
Sbjct: 61 SFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQNSEEFDVFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ L GKG GI + P+ AGH++GGT+WKI KDG ED+IYAVDYN +K
Sbjct: 121 AVFDKIIQLKYSQTVSLKGKGHGITITPYAAGHMIGGTMWKIVKDGEEDIIYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG VLE+ RP++LITD++NAL+ Q R++R+ I KT+R GNV++ +D+A
Sbjct: 181 ERHLNGAVLETLSRPSLLITDSFNALNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTA 240
Query: 221 GRVLELLLILEDYWA--EHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + L+ Y + L VS + I++ KS +EWM D I K+FE R+
Sbjct: 241 GRVLELSQLLDQLWRNLDSGLSAYSLAMLNNVSYNVIEFAKSQVEWMSDKIMKAFEIGRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N + ++ L + ++L P+ PK+VLASM L AGFS D+FVEWA + KN V+FT R
Sbjct: 301 NPYQFRYCHLCHSLADLARVPE-PKVVLASMMDLTAGFSRDLFVEWADNPKNTVIFTARS 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKA--SLVKEEE 395
GTLAR L + K V++ + +RV L GEEL Y EE + +K+ + A +LV E++
Sbjct: 360 SPGTLARTLIDNLELKQVELEVKQRVRLGGEELERYLEENKKKEKDYPVLAISTLVAEDD 419
Query: 396 SKASLGPDNNLSGDPMVIDANNANASADVV--EPHGGRYRDILIDGFVPPSTSVAPMFPF 453
S D V D + A D++ E GR F + S PMFP
Sbjct: 420 S------------DSEVEDEVASGARHDLMMAEQKSGRK-----SSFFKQARSF-PMFPC 461
Query: 454 YENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 512
+E ++WDD+GE I P+DY+ ++ ++ + D K+ P+K +S
Sbjct: 462 HEEKAKWDDYGEFIRPEDYMQRELSATEEEKQKVVRDLSKV------------PTKCISQ 509
Query: 513 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKHV 569
+ TV ++C L FID+EGR+DG SIK IL+ V P KLVLVHG +++T+HL +C
Sbjct: 510 KKTVSIRCTLAFIDFEGRSDGESIKRILNLVNPRKLVLVHGDSKSTQHLADYCQSSSSIQ 569
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG-------- 621
V+TP + ET++ T + Y+V+L + L+S++ F + D E+AW+D ++
Sbjct: 570 VSQVFTPAVGETVEATGERHIYQVKLRDALVSSLQFAQARDAELAWIDGQLDMKLAPANQ 629
Query: 622 -------------KTENGMLSLLPI-----STPAPPHKSVLVGDLKMADLKPFLSSKGIQ 663
++ L +P+ S+ H SV + + +++D K L+ GIQ
Sbjct: 630 DLMGDKPGEEKMETDQDEALDTVPVLEQNTSSKIAGHVSVFINEPRLSDFKQVLNKAGIQ 689
Query: 664 VEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EFAGG L C V +R+ + T ++ +EG +CEDYY IR LYSQ+ ++
Sbjct: 690 AEFAGGVLICNNVVCVRR----------NETGRVGLEGTVCEDYYTIRDLLYSQYAIV 737
>gi|157112944|ref|XP_001657690.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108884656|gb|EAT48881.1| AAEL000118-PA [Aedes aegypti]
Length = 744
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/771 (37%), Positives = 443/771 (57%), Gaps = 77/771 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FDP+ ++ L K TIDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + +LGL+ P+++T PVY++G + MYD ++S +
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFMSHYNMYDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ L GKG GI + P AGHL+GGT+WK+ K G ED++YA D+N +K
Sbjct: 121 AAFDRIIQLKYNQSVSLKGKGYGITITPLPAGHLIGGTIWKVMKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNAKYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L +EL P PK+VLAS A +E+GFS ++FV+WAS+V N ++ T R
Sbjct: 301 NPFQFKHLRLCHTMAELAKVP-SPKVVLASSADMESGFSRELFVQWASNVNNSIIITCRS 359
Query: 338 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLAR +++ + +++ + RRV L G EL EE R + E+ ++ + + +
Sbjct: 360 SPGTLARDLIENGGNGRKIELDVRRRVELEGAEL----EEYMRTEGEKHNRSIIKSDMDL 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+S D+ L M + + VV P G + GF S MFPF+E
Sbjct: 416 DSSSDSDDELE---MSVITGKHDI---VVRPEGRSH-----TGFFKSSKKQYAMFPFHEE 464
Query: 457 NSEWDDFGEVINPDDYIIKDED-----MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
++D++GE+I PDDY + D D I +D K ++ +LD KP+K +S
Sbjct: 465 KIKFDEYGEIIQPDDYKMIDLGPDGGFEDNKENQIKPEDIKKEKDEELSVLD-KPTKCIS 523
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
+ V+V + FID+EGR+DG S+ ILS + P ++V++ GS + T H+ +HC ++
Sbjct: 524 SRKLVEVNAQVQFIDFEGRSDGESMLKILSQLRPRRVVVIRGSPQNTAHIAEHCQLNIGA 583
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 620
V+TP E ID T++ Y+V+L+E L+S + F+K D E+AW+DA++
Sbjct: 584 RVFTPNRGEIIDATTETHIYQVRLTEALISQLEFQKGKDAEVAWIDAQIVIPAASDTPMD 643
Query: 621 --------GKTENGMLSLLPISTPA-PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGAL 671
K++ +L+L P+ P H SV + +LK+ D K L I EF+GG L
Sbjct: 644 VDQVEGNDDKSDRQILTLEPMKNDELPAHHSVFINELKLIDFKQVLMKANISSEFSGGVL 703
Query: 672 RCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
C V +R+V T ++ +EG L E+YYKIR LY Q+ ++
Sbjct: 704 WCNNGTVALRRV----------DTGKVTVEGCLSEEYYKIRELLYEQYAIV 744
>gi|390333491|ref|XP_780045.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Strongylocentrotus purpuratus]
Length = 773
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/806 (35%), Positives = 435/806 (53%), Gaps = 118/806 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++TP SGV +E+P Y++ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTPFSGVLDESPPCYMLQVDEFRFLLDCGWDEHFTMENIEGLKKHIHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + L+ P+++T PVY++G + MYD Y S+ +
Sbjct: 61 SYPDNLHLGALPYLVGKCNLTCPIYATVPVYKMGQMFMYDLYQSKHNYEEFDLFNLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ+ L GKG G+ + P GH++GGT+WKI KDG E++IYAVDYN +K
Sbjct: 121 AAFDRIIQLKYSQSVTLKGKGHGLTITPLSGGHMIGGTIWKIVKDGEEEIIYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG VLE+ RP++LITD +NA + Q R+ R E D I T+R GNVL+ VD+A
Sbjct: 181 ERHLNGAVLETISRPSLLITDCFNATYVQARRRARDEKLMDIILNTMRNEGNVLISVDTA 240
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRV+EL L+L+ W NY + L VS + +++ KS +EWM D + ++FE R+
Sbjct: 241 GRVVELSLLLDQLWRNQDSGLGNYNLAMLNNVSYNVVEFAKSQVEWMSDKVMRAFEDRRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L N EL PD PK+VLAS+ LE G+S ++F++W+ D KN V+ T R
Sbjct: 301 NPFQFKHLKLCHNLKELAKVPD-PKVVLASVPDLECGYSRELFIQWSGDAKNSVILTNRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY---EEEQTRLKK-EEALKASL--- 390
GTLAR L P P +K+ +S+RV L EEL Y E+E+ R +K +EA + L
Sbjct: 360 SHGTLARRLIETPNPNQLKLRVSKRVKLEKEELDEYRIHEKEKERQRKVDEAAQRRLEGD 419
Query: 391 ----VKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTS 446
+EE +G M D S F
Sbjct: 420 SSDESEEEMEVDDMGRSRTKHDLMMNTDTGKKGTS------------------FFKTVKK 461
Query: 447 VAPMFPFYENNSEWDDFGEVINPDDYIIKDE-DMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFPF+E WDD+GEVI P+DY+IK+ ++ ++ ++ + I
Sbjct: 462 SYPMFPFHEERLRWDDYGEVIKPEDYMIKETVQTEEEKEVKEEENADFEDAAEGDI---- 517
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +++++ V VKC + FID+EGR+DG S+K +++ V P +LVLV G AT+HL ++C
Sbjct: 518 PTKCIASQIIVDVKCSITFIDFEGRSDGESMKKLITQVKPRQLVLVRGQMNATQHLAEYC 577
Query: 566 -LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 620
L+ V+ P++ E D T + Y+V+L + L+S++LF K D E++W+D +
Sbjct: 578 HLQLAGVKVFIPRMNEICDATMESHIYQVKLKDSLVSSLLFSKTRDTELSWIDGCLDLQS 637
Query: 621 ------GKTENGMLS----------------------------------LLPI-----ST 635
GK G S ++P+ +
Sbjct: 638 AGDKLAGKAIKGSDSSPNGDEKSFGDEKKKTPGLGLGNESEDSSDDEDDIIPVLDAVQTN 697
Query: 636 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 695
PH+ V V + D K L+ GI+ EF GG L C V I++ +KG
Sbjct: 698 EVTPHRQVYVNPPRFLDFKQVLAKNGIRAEFTGGVLVCNNTVAIKR----NEKG------ 747
Query: 696 QIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ +EG +C+DYY +R LY Q+ ++
Sbjct: 748 HLTLEGAVCDDYYTVRELLYEQYAIV 773
>gi|443725188|gb|ELU12868.1| hypothetical protein CAPTEDRAFT_155355 [Capitella teleta]
Length = 728
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 433/767 (56%), Gaps = 85/767 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ P SGV E+P Y++ +D F+FL+DCGW++ FDP ++ L K IDAVLL
Sbjct: 1 MTSIIKLQPFSGVDGESPPCYMLQVDEFHFLLDCGWDEEFDPVFMENLKKHLPQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD HLGALPY + + G++ P++ST PVY++G + MYD Y S +
Sbjct: 61 SYPDPQHLGALPYLVGKCGMTCPIYSTLPVYKMGQMFMYDLYQSHHNSEEFNLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E++IYAVDYN ++
Sbjct: 121 AAFDRIQQLKYSQTINLKGKGHGLQITPLPAGHMIGGTIWKIVKDGEEEIIYAVDYNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG VLE+ RP +LITDAYNA NQ R+ R E I +TLR GN L+ +D+A
Sbjct: 181 ERHLNGCVLETINRPHLLITDAYNADFNQARRRLRDEQLMTTILQTLRNDGNCLVALDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR+LEL +L+ W + Y + L V+ + +++ KS +EWM D I +SFE R+
Sbjct: 241 GRILELAHLLDQMWRNQESGLMAYSLALLNNVAYNVVEFAKSQVEWMSDKIMRSFEERRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL P+ PK+VLAS L+ GFS ++FV+W S+ KN ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELAKVPE-PKVVLASTPDLQTGFSRELFVQWCSNPKNCIILTNRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
TL R L P +V++ + RRV L G L + L+ E KA + +E+ K
Sbjct: 360 APPTLCRQLIDYPNRGSVRLEVKRRVRLEGRALEDF------LRAERERKAEVEREKAEK 413
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-----DGFVPPSTSVAPMFP 452
+ S D SAD GGR+ D+++ GF MFP
Sbjct: 414 ERREREGLESSDD----------SADEEVGDGGRH-DLMVKMEKGKGFFKQVKKSQAMFP 462
Query: 453 FYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAK--PSKV 509
F E +WD++GE+I +DYIIK+ M+ MH S + + P+K
Sbjct: 463 FEEEKLKWDEYGEIIRIEDYIIKEATTMEDEPMH---------NELKSFVTEKTEVPTKC 513
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+S+ T++++ +++ID+EGR+DG S++ I+S V P +L+LV GS E+TE L C
Sbjct: 514 ISSSETLELRANILYIDFEGRSDGDSMRKIISQVRPRQLILVRGSRESTESLAAFCRD-- 571
Query: 570 CP---HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-----EVG 621
P VYTP++ E +D T++ ++V+L + ++S + F K D EIAW+DA +
Sbjct: 572 APDIGKVYTPRLNELVDATTESKIFQVRLKDSVVSALNFSKARDAEIAWIDAMLDLNQAE 631
Query: 622 KTENGM----LSLLPISTPAP---PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 674
E+G +P+ P PH +V V + K++D K L + G+Q EF+ G L C
Sbjct: 632 AMEDGENPEDEEAVPVVIPTSQIRPHGAVFVNEPKLSDFKQTLVNLGVQAEFSAGVLICN 691
Query: 675 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V +RK AG ++ +EG LC+DYY+IR LY QF ++
Sbjct: 692 SVVAVRK-NEAG---------RLQLEGTLCDDYYRIRQLLYEQFAIV 728
>gi|195054718|ref|XP_001994270.1| GH10247 [Drosophila grimshawi]
gi|193896140|gb|EDV95006.1| GH10247 [Drosophila grimshawi]
Length = 754
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 288/779 (36%), Positives = 442/779 (56%), Gaps = 83/779 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA+D+N +K
Sbjct: 121 TAFDKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIVYAIDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WA + N ++FT R
Sbjct: 301 NPFQFKHINLCHTLADVYKLPVGPKVVLASTPDMESGFTRDLFVQWAGNPNNSIIFTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
G+L+ +++ P + +++ + RRV L G EL Y Q E L +VK E
Sbjct: 361 GPGSLSMELVENSVPGRQLELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPEVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
++S + I+ + D+V GR+ GF + MFPF+E
Sbjct: 416 ESSSSESED------DIEMSVITGKHDIVVRAEGRHH----SGFFKSNKRHHVMFPFHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDG-KLDEGSASL----------ILDAK 505
++DD+GEVIN DDY I D + D AM + K +E A L L K
Sbjct: 466 KIKYDDYGEVINLDDYRIVDANYDYTAMDDQNKENVKKEEPHAELHSNGNLDNDVQLLEK 525
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +HC
Sbjct: 526 PTKLISQRKTIEVHAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQVVAKHC 585
Query: 566 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG---- 621
++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 586 EQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLGMRLQ 645
Query: 622 -----------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQ 663
E L+L ++ P H SVL+ +LK++D K L I
Sbjct: 646 AIDAPNQSEITVEQDVAAQEGKTLTLETLAEDEIPVHNSVLINELKLSDFKQVLMRNSIN 705
Query: 664 VEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EF+GG L C + +R+V T ++ +EG + E+YYKIR LY Q+ ++
Sbjct: 706 SEFSGGVLWCCNGTLALRRV----------DTGKVAMEGCISEEYYKIRELLYEQYAIV 754
>gi|195109795|ref|XP_001999467.1| GI23051 [Drosophila mojavensis]
gi|193916061|gb|EDW14928.1| GI23051 [Drosophila mojavensis]
Length = 754
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/785 (36%), Positives = 438/785 (55%), Gaps = 95/785 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDVYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGTVWKI K G ED+IYAVD+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTVWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WA + N ++FT R
Sbjct: 301 NPFQFKHINLCHTLADIYKLPAGPKVVLASTPDMESGFTRDLFVQWAGNPNNSIIFTTRT 360
Query: 338 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
G+L+ +++ P + +++ + RRV L G EL Y Q E L +VK E
Sbjct: 361 GPGSLSMDLVENYSPGRQIELDLRRRVELEGAELEEYLRTQG-----EKLNPLIVKPEVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRSEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKDEDM------DQAAMHIGGDDGKLDEGSASLI-----LDAK 505
++DD+GEVIN DDY I D DQ +I ++ ++ S + L K
Sbjct: 466 KIKYDDYGEVINLDDYRIVDTGYDYAPTDDQNKENIKKEEPHVEPQSNGNLNNDVQLLEK 525
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +HC
Sbjct: 526 PTKLISQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQIVAKHC 585
Query: 566 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 625
++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 586 EQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLG---- 641
Query: 626 GMLSLLPISTPA----------------------------PPHKSVLVGDLKMADLKPFL 657
+ L I P P H SVL+ +LK++D K L
Sbjct: 642 --MRLQAIDAPTQSEVTVEQDVAALEGKTLTLEMLEEDEIPVHNSVLINELKLSDFKQVL 699
Query: 658 SSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
I EF+GG L C + +R+V ++ +EG L EDYYKIR LY
Sbjct: 700 MRNNINSEFSGGVLWCCNGTLALRRVDVG----------KVAMEGCLSEDYYKIRELLYE 749
Query: 717 QFYLL 721
Q+ ++
Sbjct: 750 QYAIV 754
>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae]
gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]
Length = 756
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 279/781 (35%), Positives = 438/781 (56%), Gaps = 85/781 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADIYKLPAGPKVVLASTPDLESGFTRDLFVQWASNSNNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P + +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCTPGRQIELDIRRRVELEGAELDEYLRTQG-----EKLNPLIVKPDVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKD---------EDMDQAAMHIGGDDGKLDEGSASLILDA--- 504
++D++GE+IN DDY I D E+ ++ + +D + I D
Sbjct: 466 KVKYDEYGEIINLDDYRIADTSGYDFVPMEEQNKENVKKEEPGSGIDHQTNGTIGDTDVQ 525
Query: 505 ---KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 561
KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+ +
Sbjct: 526 LLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVV 585
Query: 562 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 621
+HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD +G
Sbjct: 586 AKHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLG 645
Query: 622 KTENGMLSLLPISTPA--------------------PPHKSVLVGDLKMADLKPFLSSKG 661
+ + + ++ P H SVL+ +LK++D K L
Sbjct: 646 MRLKAIDAAMDVTAEQDNSAQEAKTLTLETLAEDEIPVHNSVLINELKLSDFKQILMRNN 705
Query: 662 IQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYL 720
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+ +
Sbjct: 706 INSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQYAI 755
Query: 721 L 721
+
Sbjct: 756 V 756
>gi|196012036|ref|XP_002115881.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
gi|190581657|gb|EDV21733.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
Length = 745
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/784 (37%), Positives = 441/784 (56%), Gaps = 102/784 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSG +E P YL+ +D FNFL+DCGW+++FD +++ + + IDAVLL
Sbjct: 1 MTSIIRMTVLSGGQDEGPPCYLLQVDEFNFLLDCGWDENFDMEMMERVKRHIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGA+PY + + L P+++T PV+++G + MYD +LSR
Sbjct: 61 SHPDLLHLGAIPYLVGKCQLKCPIYATVPVHKMGQMFMYDLFLSRNDYEDFDLFSLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE-DVIYAVDYNRRK 161
+T L YSQ+ HL+GKG G+ + P+ AGH++GGT+WKI KDGE D+IYAVDYN +K
Sbjct: 121 DAFSRITALKYSQHVHLTGKGNGLTITPYAAGHMVGGTIWKIIKDGEEDIIYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL---RAGGNVLLPVD 218
E+HLNG+VLE+ P++LITDAYNA +NQ R+ R+ Q IS+ L R+GGNVL+ VD
Sbjct: 181 ERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRD--QKLISRVLNALRSGGNVLIAVD 238
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+AGRVLEL L+L+ W + YPI L +VS + +++ KS +EWM D + +FE +R
Sbjct: 239 TAGRVLELSLLLDHLWRKDPGLSAYPIALLNHVSYNVVEFAKSQVEWMCDKVLVAFEDNR 298
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
+N F K++ L + +EL P+ PK+VLAS L GF+ D+F++WA + KNL +FT R
Sbjct: 299 NNPFQFKYIQLCHSLNELSGLPE-PKVVLASSPDLTCGFARDLFLQWAGNSKNLTIFTGR 357
Query: 337 GQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTL R + D P+++ VT+ RV L G EL Y +++ +K + L
Sbjct: 358 SSPGTLGRHI-LDERPQSIDVTVKTRVELSGNELEEYLQKEREKEKVKELDGLKF----- 411
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI------DGFVPPSTSVAPM 450
+ ID+++ + G RD++I F + V PM
Sbjct: 412 --------------VTIDSDDELTTITGGYHTGKVKRDLMIKDDDRRSSFFKKAV-VHPM 456
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK--LDEGSASLILDAKPSK 508
+PF E +WD++GE+INP+D+ + D + + D L++G+ + P+K
Sbjct: 457 YPFSETRIKWDEYGEIINPEDFTLIDVSEEDKPKKVTHSDRHYFLNKGNPKI-----PTK 511
Query: 509 VVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH 568
VS + + C + ID+EGR+DG SI+ ILS V P LVLV GS+ A + L C +
Sbjct: 512 CVSFLKHIDINCRISLIDFEGRSDGESIRNILSLVNPRHLVLVRGSSAAVQELGNFCRQS 571
Query: 569 V---CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 625
V+TP + +T+D T + Y+V+L + L+S++ + D E+AWVD V T
Sbjct: 572 KEMGVRKVFTPVVGQTVDATFESHLYQVRLRDSLVSSLYYCNAKDAELAWVDGRVTVTAK 631
Query: 626 GMLSLL-----------------------PISTP-----APPHKSVLVGDLKMADLKPFL 657
G LL PI P P HKSV + D +++DLK L
Sbjct: 632 GHERLLDKNNKNEDEAMDTDNTSITEAVVPILEPLLQSEIPGHKSVFINDPRLSDLKQTL 691
Query: 658 SSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQ 717
+ GIQ EF GG + C + + +R+ + T +I +EG +C DYY +R LY Q
Sbjct: 692 TKAGIQAEFVGGVIVCNDKIAVRR----------TETGKITLEGAICNDYYTVRDILYQQ 741
Query: 718 FYLL 721
+ ++
Sbjct: 742 YAII 745
>gi|410916717|ref|XP_003971833.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Takifugu rubripes]
Length = 787
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/809 (35%), Positives = 448/809 (55%), Gaps = 116/809 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR EM + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+TL + ++L P PK+VL S LE+GFS ++F++W+ D KN ++ T R
Sbjct: 301 NPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWSKDAKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTL+R L +P K + + + +RV L G EL Y E+ R+KKE A K KE +
Sbjct: 360 TPGTLSRYLIDNPGEKHLDLEVRKRVKLEGRELEEY-LEKDRVKKEAAKKLEQAKEVDVD 418
Query: 398 ASLGPDNNLSGD-PMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+S D + + P ++ + + + +++ G R F + PMFP +E
Sbjct: 419 SSDESDIDDDLEQPTIVKSKHHDL---MMKSEGSRK-----GSFFKQAKKSYPMFPTHEE 470
Query: 457 NSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
+WD++GE+I +D+++ +E+ + + D +D+ + L P+K +S
Sbjct: 471 RIKWDEYGEIIRLEDFLVPELQATEEEKSKFDSGLTNGDEPMDQDLSVL-----PTKCIS 525
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N +++++ + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L + C
Sbjct: 526 NVESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKD 585
Query: 572 -HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENG 626
VYTP+++ETID TS+ Y+V+L + L+S++ F K D E+AW+D V K + G
Sbjct: 586 IKVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTG 645
Query: 627 ML----------------------------------------------------SLLPIS 634
++ ++P
Sbjct: 646 VMLEDGVKEEGEDSELSMEVTPDLGIEPSAIAVAAQRAMKNLFGEEEKELSEESDIIPTL 705
Query: 635 TPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKG 689
P P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+ G
Sbjct: 706 EPLPTPEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGRIG 764
Query: 690 GGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
+EG LCEDYYKIR LY Q+
Sbjct: 765 ---------LEGCLCEDYYKIRELLYQQY 784
>gi|194906654|ref|XP_001981406.1| GG11633 [Drosophila erecta]
gi|190656044|gb|EDV53276.1| GG11633 [Drosophila erecta]
Length = 756
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/783 (35%), Positives = 438/783 (55%), Gaps = 89/783 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPDVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
S S I+ + D+V GR+ GF + MFP++E
Sbjct: 416 DES------SSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 499
+ D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 466 KVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGMGADQQANGGIGDNDVQ 525
Query: 500 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
L+ KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+
Sbjct: 526 LL--EKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQ 583
Query: 560 HLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE 619
+ +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 584 VVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGR 643
Query: 620 VGKTENGMLSLLPISTPA--------------------PPHKSVLVGDLKMADLKPFLSS 659
+G + + + ++ P H SVL+ +LK++D K L
Sbjct: 644 LGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLDDDEIPIHNSVLINELKLSDFKQILMR 703
Query: 660 KGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+
Sbjct: 704 NNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQY 753
Query: 719 YLL 721
++
Sbjct: 754 AIV 756
>gi|195503417|ref|XP_002098643.1| GE26465, isoform A [Drosophila yakuba]
gi|194184744|gb|EDW98355.1| GE26465, isoform A [Drosophila yakuba]
Length = 756
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/786 (36%), Positives = 437/786 (55%), Gaps = 95/786 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 397 KASLGPDNNLSGDPMV---IDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 453
PD I+ + D+V GR+ GF + MFP+
Sbjct: 412 -----PDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPY 462
Query: 454 YENNSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEG 496
+E + D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 463 HEEKVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGLGADQQTNGGIGDN 522
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
L+ KP+K+ + T++V + ID+EGR+DG S+ ILS + P +++++HG+AE
Sbjct: 523 DVQLL--EKPTKLXNQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE 580
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
T+ + +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWV
Sbjct: 581 GTQVVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
Query: 617 DAEVGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPF 656
D +G E L+L ++ P H SVL+ +LK++D K
Sbjct: 641 DGRLGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQI 700
Query: 657 LSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L I EF+GG L C + +R+V ++ +EG L E+YYKIR LY
Sbjct: 701 LMRNNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLY 750
Query: 716 SQFYLL 721
Q+ ++
Sbjct: 751 EQYAIV 756
>gi|357440035|ref|XP_003590295.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479343|gb|AES60546.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 630
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/301 (78%), Positives = 262/301 (87%), Gaps = 19/301 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDSFNILIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SHPDTLHL ALPYA+K LGLSAPV+STEPVYRLGLLTMYD +LSR+
Sbjct: 61 SHPDTLHLAALPYAIKHLGLSAPVYSTEPVYRLGLLTMYDHFLSRKQVSDFDLFTLDDID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
+VTRLTYSQN+HLSGKGEGIV+APH AGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQTVTRLTYSQNHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q++ F D + KTLRAGGNVLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R+LEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM DSI KSFE +R+N FL
Sbjct: 241 RILELILMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFL 300
Query: 282 L 282
L
Sbjct: 301 L 301
>gi|21358013|ref|NP_651658.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
gi|18203548|sp|Q9V3D6.1|CPSF2_DROME RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|5679134|gb|AAD46873.1|AF160933_1 LD14168p [Drosophila melanogaster]
gi|7301732|gb|AAF56844.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
Length = 756
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/786 (36%), Positives = 437/786 (55%), Gaps = 95/786 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L KG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 397 KASLGPDNNLSGDPMV---IDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 453
PD I+ + D+V GR+ GF + MFP+
Sbjct: 412 -----PDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPY 462
Query: 454 YENNSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEG 496
+E + D++GE+IN DDY I D E++ + IG + +G + +
Sbjct: 463 HEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQANGGIVDN 522
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
L+ KP+K++S T++V + ID+EGR+DG S+ ILS + P +++++HG+AE
Sbjct: 523 DVQLL--EKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE 580
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
T+ + +HC ++V V+TPQ E IDVTS++ Y+V+L+E L+S + F+K D E+AWV
Sbjct: 581 GTQVVARHCEQNVGARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
Query: 617 DAEVGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPF 656
D +G E L+L ++ P H SVL+ +LK++D K
Sbjct: 641 DGRLGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT 700
Query: 657 LSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L I EF+GG L C + +R+V ++ +EG L E+YYKIR LY
Sbjct: 701 LMRNNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLY 750
Query: 716 SQFYLL 721
Q+ ++
Sbjct: 751 EQYAIV 756
>gi|50539828|ref|NP_001002384.1| cleavage and polyadenylation specificity factor subunit 2 [Danio
rerio]
gi|49903850|gb|AAH76029.1| Cleavage and polyadenylation specific factor 2 [Danio rerio]
Length = 790
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 288/812 (35%), Positives = 447/812 (55%), Gaps = 119/812 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++ F ++ L + +DAVLL
Sbjct: 1 MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E++IY VD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + S+L P PK+VL S LE+GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K +++ + +R L G EL Y E++ R+KKE A K KE +
Sbjct: 360 TPGTLARYLIDNPGEKRIELEIRKRCRLEGRELEEYMEKE-RMKKEAAKKLEQAKEVDLD 418
Query: 398 ASLGPDNNLSGD---PMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 454
+S ++++ D P V+ + + +++ GGR GF + MFP +
Sbjct: 419 SS--DESDMEDDLEQPAVVKTKHHDL---MMKGEGGRK-----GGFFKQAKKSYSMFPTH 468
Query: 455 ENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
E +WD++GE+I P+D+++ + + +++ + G +G E L P+K S
Sbjct: 469 EERIKWDEYGEIIRPEDFLVPELQATEEEKSKLESGLTNG---EEPMEQDLSDVPTKCTS 525
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
T+ ++ +++IDYEGR+DG SIK I++ + P +L++VHG +A++ L + C +
Sbjct: 526 TTQTLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDASQDLAESCKAYSGK 585
Query: 572 --HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----------- 618
VY P+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 586 DIKVYIPKLQETVDATSETHIYQVRLKDSLVSSLQFCKARDTELAWIDGVLDMRVEKVDT 645
Query: 619 ----EVGKT--------ENGM-----LSLLPISTPA------------------------ 637
E+G+ E GM L+ P + A
Sbjct: 646 GVIVELGEAKDEAEEGGEQGMEVTEELNTEPSTAAAANQRAMKTLFGEDEKEISEESDVI 705
Query: 638 ------PPH-----KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 686
P H +SV + + +++D K L +GIQ EF GG L C V +R+ AG
Sbjct: 706 PTLEPLPAHEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRT-EAG 764
Query: 687 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
+I +EG C+DYY+IR LY Q+
Sbjct: 765 ---------RICLEGCHCDDYYRIRELLYEQY 787
>gi|354494117|ref|XP_003509185.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Cricetulus griseus]
Length = 782
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ ++ + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKNKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDGPSDSSAIAQQKAMKSLFGDDDKELGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|195449222|ref|XP_002071979.1| GK22564 [Drosophila willistoni]
gi|194168064|gb|EDW82965.1| GK22564 [Drosophila willistoni]
Length = 757
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/787 (35%), Positives = 436/787 (55%), Gaps = 96/787 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIRDLKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G LE RP++LITDAYNAL+ Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELERLQRPSLLITDAYNALYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS +E+GF+ D+FV+WA++ N ++FT R
Sbjct: 301 NPFQFKHINLCHSLADVFKLPAGPKVVLASTPDMESGFTRDLFVQWAANPNNSIIFTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
G+LA +++ P + +++ + RRV L G EL Y Q E L ++K +
Sbjct: 361 SPGSLAMELVENAVPGRKIELDVRRRVELEGPELEEYLRTQG-----EKLNPLIIKPDVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRH----TSGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKD---------EDMDQAAM--------------HIGGDDGKL 493
++D++GE+IN DDY I D E+ ++ + H GD
Sbjct: 466 KIKYDEYGEIINLDDYRIADLGGYDYLPAEEQNKENVKKEEPGGGQQDQQQHANGD---- 521
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+ L KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG
Sbjct: 522 --MDTDVQLLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHG 579
Query: 554 SAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 613
+AE T+ + +HC ++V V+TP E IDVT+++ Y+V+L+E L+S + F+K + E+
Sbjct: 580 TAEGTKAVARHCEQNVGARVFTPNKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKAKNAEV 639
Query: 614 AWVDA------------------EVGKTENGMLSLLPIST-PAPPHKSVLVGDLKMADLK 654
AWVD EV E L+L + P H SVL+ +LK++D K
Sbjct: 640 AWVDGRLGMRLKAIDGATNPTEQEVSIQEGQTLTLETLEEDEIPVHNSVLINELKLSDFK 699
Query: 655 PFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 714
L I EF+GG L C + AG ++ +EG L EDYYKIR L
Sbjct: 700 QILMRNNINSEFSGGVLWCSNNTLALRRIDAG---------KVSMEGCLSEDYYKIRELL 750
Query: 715 YSQFYLL 721
Y Q+ ++
Sbjct: 751 YEQYAIV 757
>gi|8393762|ref|NP_058552.1| cleavage and polyadenylation specificity factor subunit 2 [Mus
musculus]
gi|18202027|sp|O35218.1|CPSF2_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|2331036|gb|AAB66830.1| cleavage and polyadenylation specificity factor [Mus musculus]
gi|15489017|gb|AAH13628.1| Cleavage and polyadenylation specific factor 2 [Mus musculus]
gi|148686924|gb|EDL18871.1| cleavage and polyadenylation specific factor 2 [Mus musculus]
Length = 782
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/815 (34%), Positives = 442/815 (54%), Gaps = 127/815 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
MFP E +WD++GE+I P+D+++ + + +++ + G +G E L P
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDVP 519
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 520 TKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR 579
Query: 567 ----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA---- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 580 AFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDM 637
Query: 619 EVGKTENGML-----------------------------------------------SLL 631
V K + G++ ++
Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELGEETEII 697
Query: 632 PISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 686
P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 698 PTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 752
Query: 687 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|157822735|ref|NP_001100223.1| cleavage and polyadenylation specificity factor subunit 2 [Rattus
norvegicus]
gi|149025374|gb|EDL81741.1| cleavage and polyadenylation specific factor 2 (predicted) [Rattus
norvegicus]
Length = 782
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/815 (34%), Positives = 442/815 (54%), Gaps = 127/815 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPTAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
MFP E +WD++GE+I P+D+++ + + +++ + G +G E L P
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDVP 519
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 520 TKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR 579
Query: 567 ----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA---- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 580 AFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDM 637
Query: 619 EVGKTENGML-----------------------------------------------SLL 631
V K + G++ ++
Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKELGEESEVI 697
Query: 632 PISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 686
P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 698 PTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 752
Query: 687 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|28461235|ref|NP_787002.1| cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|426248504|ref|XP_004018003.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Ovis aries]
gi|1706103|sp|Q10568.1|CPSF2_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|599683|emb|CAA53535.1| Cleavage and Polyadenylation specificity factor (CPSF) 100kD
subunit [Bos taurus]
gi|296475169|tpg|DAA17284.1| TPA: cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|440892550|gb|ELR45701.1| Cleavage and polyadenylation specificity factor subunit 2 [Bos
grunniens mutus]
Length = 782
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/817 (34%), Positives = 443/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|195341087|ref|XP_002037143.1| GM12754 [Drosophila sechellia]
gi|194131259|gb|EDW53302.1| GM12754 [Drosophila sechellia]
Length = 743
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/783 (35%), Positives = 437/783 (55%), Gaps = 102/783 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
P V + +++ + D+ DI+ + MFP++E
Sbjct: 412 -------------PDVEEESSSESEDDIEMSVITGKHDIV------SNKRHHVMFPYHEE 452
Query: 457 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 499
+ D++GE+IN DDY I D E++ + IG D +G + +
Sbjct: 453 KVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGADQQANGAIVDNDVQ 512
Query: 500 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
L+ KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+
Sbjct: 513 LL--EKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQ 570
Query: 560 HLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE 619
+ +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 571 VVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGR 630
Query: 620 VGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSS 659
+G E L+L ++ P H SVL+ +LK++D K L
Sbjct: 631 LGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQTLLR 690
Query: 660 KGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+
Sbjct: 691 NNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQY 740
Query: 719 YLL 721
++
Sbjct: 741 AIV 743
>gi|291406601|ref|XP_002719640.1| PREDICTED: cleavage and polyadenylation specific factor 2
[Oryctolagus cuniculus]
Length = 782
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKEAGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|344274144|ref|XP_003408878.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Loxodonta africana]
Length = 782
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEASSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|73962293|ref|XP_537353.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Canis lupus familiaris]
Length = 782
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|348553776|ref|XP_003462702.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cavia porcellus]
Length = 782
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|308799055|ref|XP_003074308.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
gi|116000479|emb|CAL50159.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
Length = 807
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 310/811 (38%), Positives = 440/811 (54%), Gaps = 116/811 (14%)
Query: 2 GTSVQVTPLSGV-------FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST 54
G V VTPL GV E + Y VSIDG N L+DCGW D FD +L+PL +A
Sbjct: 22 GNKVLVTPLYGVRGVDFDGAGERAMCYHVSIDGCNILLDCGWTDAFDVEMLKPLEAIAKD 81
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------- 106
+DAVL+SHPDT HLGALPYA +LG++ V++T PV+++G + MYD +L+R+
Sbjct: 82 VDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTRQDQEDFQET 141
Query: 107 -----------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+ + Y Q L GKGEGI V + AGH LGG +WKI KD ED+IYAV
Sbjct: 142 FSLDDVDKAFAAFVPVKYQQLSMLRGKGEGISVMAYAAGHTLGGAMWKIGKDAEDIIYAV 201
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQP----PRQQREMFQDAISKTLRAGG 211
DYN RKE+HLNG +S RPA+LITDA + P PR + D I +LR G
Sbjct: 202 DYNVRKERHLNGATFDSIHRPALLITDASSVEREVPKSTVPRDTK--LVDTILSSLRMNG 259
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
NVL+P+D AGRVLEL+L+LE+ W + L +Y I LT V+ +T+D+ KS LEWMGD +T
Sbjct: 260 NVLIPIDPAGRVLELILLLEEKWQQRQLGSYQIVLLTNVAYNTLDFAKSHLEWMGDLVTS 319
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
+FE R+N F K +T+ EL P GPK+VLAS SLEAG + +F EWA D NL
Sbjct: 320 AFERRRENPFNTKFITICHTMDELKALPPGPKVVLASFGSLEAGPARHLFAEWAGDKSNL 379
Query: 331 VLFTERGQFGTL----ARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEAL 386
V+ T + + G+L R+ K VK T+SRRVPL GEEL +E + K ++
Sbjct: 380 VVLTGQPEEGSLMEEVVRVSSKPAAKKNVKFTLSRRVPLEGEELATHESTRKADKSKKEE 439
Query: 387 KASL--VKEEESKASLGPDNNLSGDPM----VIDANNANASADVVEPHGGRYRDILIDGF 440
+ V EE + P +PM + + A AD+ R R+ L +GF
Sbjct: 440 EKKPEHVSVEEEMVDIKPVEPDEPEPMDVLFGVTTVGSTAEADL------RRRETLTEGF 493
Query: 441 VPPSTSVAPMFPFYENNSEWD----DFGEVINPDDYIIKDEDMDQAAMHIGGDDGK---- 492
P T PMF + WD D+G+ I+ + ++ + QA+ + + K
Sbjct: 494 TPIMTQHGPMFA----DEVWDPVMTDYGQEIDIELFMRTSQ---QASGRMVPELAKEPST 546
Query: 493 -LDEGSASLILDAK--------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIK 537
++ S +I + + P+K+VS + V VK ++ ID+EG+ADG+S++
Sbjct: 547 MFEDPSVEMIEEQQLVEAAQEAEEDEEIPTKLVSEAVEVSVKATILTIDFEGKADGQSVR 606
Query: 538 TILSHVAPLKLVLVHGSAEATEHLK-QHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLS 596
T++ AP ++VLVHG+A+ T+ LK Q L +YTP +T++ TS + YK++LS
Sbjct: 607 TLIEQAAPRQIVLVHGNAKETKLLKDQLVLTLPGVDIYTPNAGKTVECTSSMATYKIRLS 666
Query: 597 EKLMSNVLFKKLGDYEIAWVDAEVGKT--ENGMLSLLPIST------------------- 635
+ L + + Y + WV+ VGK E G LLP+ST
Sbjct: 667 DALFQKAKMRDMSGYRVGWVNGIVGKALEEGGAPMLLPMSTLSTKADAGALVTTTSNEMA 726
Query: 636 ----PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGG 690
A SV +GDL++ D + L+ +GI EF+GG L C + VTIRK
Sbjct: 727 IMKRAAAQPGSVFLGDLRLVDFRQALAQEGITAEFSGGVLVCADGRVTIRK--------- 777
Query: 691 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+++VIEG L +D+++IR LYSQ+ +L
Sbjct: 778 -DSDEKLVIEGALSQDFFEIRQILYSQYQIL 807
>gi|149737455|ref|XP_001497134.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Equus caballus]
Length = 782
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|34101288|ref|NP_059133.1| cleavage and polyadenylation specificity factor subunit 2 [Homo
sapiens]
gi|114654441|ref|XP_001147277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 3 [Pan troglodytes]
gi|397525769|ref|XP_003832826.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Pan paniscus]
gi|51338827|sp|Q9P2I0.2|CPSF2_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|119601886|gb|EAW81480.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|119601888|gb|EAW81482.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|193786082|dbj|BAG50953.1| unnamed protein product [Homo sapiens]
gi|410221574|gb|JAA08006.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221576|gb|JAA08007.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221578|gb|JAA08008.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410252002|gb|JAA13968.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307320|gb|JAA32260.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307322|gb|JAA32261.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339303|gb|JAA38598.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339305|gb|JAA38599.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339307|gb|JAA38600.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339309|gb|JAA38601.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339311|gb|JAA38602.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
Length = 782
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|296215760|ref|XP_002754257.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Callithrix jacchus]
gi|403298149|ref|XP_003939897.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|431839217|gb|ELK01144.1| Cleavage and polyadenylation specificity factor subunit 2 [Pteropus
alecto]
Length = 782
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISMTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|383872268|ref|NP_001244509.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|402876992|ref|XP_003902228.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Papio anubis]
gi|355693514|gb|EHH28117.1| hypothetical protein EGK_18472 [Macaca mulatta]
gi|355778801|gb|EHH63837.1| hypothetical protein EGM_16889 [Macaca fascicularis]
gi|380783537|gb|AFE63644.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|383412079|gb|AFH29253.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|384942144|gb|AFI34677.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
Length = 782
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|351699560|gb|EHB02479.1| Cleavage and polyadenylation specificity factor subunit 2
[Heterocephalus glaber]
Length = 782
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEVDIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPIDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|126282067|ref|XP_001365312.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Monodelphis domestica]
Length = 782
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDTPSDASVIAQQKAMKSLFGDDDKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|395503674|ref|XP_003756188.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sarcophilus harrisii]
Length = 782
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDDKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|149531954|ref|XP_001507374.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Ornithorhynchus anatinus]
Length = 782
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQAAEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEESEMQVDPPSDSSTLAQQKAMKSLFGDDDKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|71894931|ref|NP_001026379.1| cleavage and polyadenylation specificity factor subunit 2 [Gallus
gallus]
gi|60098929|emb|CAH65295.1| hypothetical protein RCJMB04_15m16 [Gallus gallus]
Length = 782
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 283/816 (34%), Positives = 445/816 (54%), Gaps = 129/816 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-CPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + + RRV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 448
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 449 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEELEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---- 752
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRELLYKQYAIV 782
>gi|242021798|ref|XP_002431330.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
gi|212516598|gb|EEB18592.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
Length = 731
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 272/768 (35%), Positives = 433/768 (56%), Gaps = 84/768 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ +SG +E+P +++ +D F FL+DCGW++ FD ++ L K IDAV+L
Sbjct: 1 MTSIIKFQAISGAMDESPPCFILQVDEFRFLLDCGWDEKFDQEYMKELKKHVPLIDAVIL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPY + + LS P+++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYLVGKCSLSCPIYATIPVYKMGQMFMYDLYQSRYNMEEFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG GI + P AGH++GG++WKI K G ED+IYAVDYN +K
Sbjct: 121 AAFDKIIQLKYNQSIAMKGKGYGITITPLPAGHMIGGSIWKIFKVGEEDIIYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR+ GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKIQRPSLLITDAFNATYQQQRRRVRDEKLMTNILQTLRSNGNVLVTVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +LE W L Y + FL VS +T+++ KS +EWM + + +SFE +R+
Sbjct: 241 GRVLELAHMLEQLWRNKESGLLAYSLAFLNNVSYNTVEFAKSQIEWMSEKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F K+V L + SEL P PK+VLAS +E+GFS ++F++W+S+ N ++ T R
Sbjct: 301 NPFQFKYVQLCHSFSELSKVP-SPKVVLASTPDMESGFSRELFLQWSSNPLNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + + +RV L GEEL Y + + +++E + + + +
Sbjct: 360 SPGTLARDLIENGGDRIISIEIKKRVKLEGEELEEYFKNEEERREQERENVDVSSDSDDE 419
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 457
+ + D +V D+ +PH GF + MFPFYE+
Sbjct: 420 LEMIQVSKGRHDFLVKDS----------KPHS---------GFFKTNKKQNAMFPFYEHK 460
Query: 458 SEWDDFGEVINPDDYII--KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT 515
++DD+GE+INPD Y + + E MD ++ ++++ P+K +S
Sbjct: 461 VKFDDYGEIINPDFYKLEGEKEKMDDVKDEAMDEEERVEDQEV-------PTKCISYTKE 513
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 575
+ +K + FID+EGR+DG SI+ I+S + P +L+L+ G+ E+T+ L K ++
Sbjct: 514 IMIKAQIQFIDFEGRSDGESIQKIISQIRPRRLILIRGTGESTKSLVNIVSKSTDAKIFA 573
Query: 576 PQIE-ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV-------------- 620
PQ + E +D T++ Y+++L+++L+S++ F+K + E+AW+DA+V
Sbjct: 574 PQKKSEVVDATTETYIYQIRLTDQLISSLYFQKGKEAEVAWLDAQVLTKNRSADARPSEE 633
Query: 621 -------GKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC 673
K E L LLP+ P H++ + +LK++D K L+ I EF+GG LRC
Sbjct: 634 EMEIDEELKDEILTLDLLPVED-IPGHETSYINELKLSDFKQILNKNNINCEFSGGVLRC 692
Query: 674 GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ AG ++++EG L EDYYK++ L Q+ ++
Sbjct: 693 CHGSVAVRRHEAG---------RVILEGCLSEDYYKVKELLCQQYAIV 731
>gi|340370496|ref|XP_003383782.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Amphimedon queenslandica]
Length = 730
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 291/766 (37%), Positives = 423/766 (55%), Gaps = 81/766 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ T LSG E P YL+ +D F FL+DCGW++ F P + + + K IDAVLL
Sbjct: 1 MTSIIKFTALSGAKGEGPPCYLLQVDEFCFLLDCGWDEFFSPEIAENIKKHIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPY + +LGL PV++T PVY++G + MYD Y +R +
Sbjct: 61 SHPDVVHLGALPYVVGRLGLRCPVYATIPVYKMGQMFMYDLYQARHNSEEFDLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L GKG G+ + P+ AGH++GGT+WKI KDG E+++YAVDYN +K
Sbjct: 121 QSFDLVVQVKYSQTVQLKGKGHGLTITPYPAGHMVGGTIWKIVKDGEEEIVYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G V ++F RP +LITDAYNAL Q R++R+ D I TLR GNVL+ VD+A
Sbjct: 181 ERHLDGAVFDNFSRPHLLITDAYNALSVQARRKERDKALLDKIVNTLRKNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y I L+ VS + +++ KS +EWM + + ++FE SR
Sbjct: 241 GRVLELSQLLDQMWRHQELGFGAYSIVLLSNVSYNVVEFAKSQVEWMSEKLMRTFEDSRT 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+ L N EL + PK VL S LE GFS D+F+ W+++ N ++FT +
Sbjct: 301 NPFQFQHINLCHNLEELAKVSN-PKAVLVSPPDLECGFSRDLFLHWSNNPHNSIIFTSKT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY---EEEQTRLKKEEALKASLVKEE 394
TLAR L + + + + RRVPL G EL Y E+E+ + ++ K S +E
Sbjct: 360 AHNTLARTLVDNLKIITIDMDVKRRVPLEGAELEEYLMKEKEKAKTANDDDAKDSDESDE 419
Query: 395 ESKAS-------LGPDNNLSGDP----MVIDANNANASADVVEPHGGRYRDILIDGFVPP 443
E + LS P M+ D A +S F
Sbjct: 420 EMEVEGTTKPTTPTTPRCLSKTPKYDLMMTDEGKAKSS------------------FFKQ 461
Query: 444 STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILD 503
+ S PM+ F +WD++GE +DY + D + G DG E + +
Sbjct: 462 TKSF-PMYHFKGEKIKWDEYGEPFRHEDYQLNDVFFKEDKEPEDGGDGVTKEVTKVI--- 517
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK- 562
P+K VS + TV V+ L FID+EGR+DG SIK IL+ + P +L+L+HGS E+T+ L
Sbjct: 518 --PTKCVSFKKTVPVRSSLSFIDFEGRSDGDSIKRILTIMKPRQLILIHGSLESTKCLVD 575
Query: 563 -QHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 620
H + + P V+ P + ETID T++ Y V+L++ LMS F D E+AWVD ++
Sbjct: 576 FSHSVLGMDPKKVFAPAVGETIDATTESQLYIVKLTDALMSGTRFAPGKDAELAWVDGQI 635
Query: 621 GKTENGMLSLLPI-----STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 675
+ +G S +P+ + HK+V + +++D K L+ GIQ EF GGAL C
Sbjct: 636 RLSSDGTDS-IPVLDVFHNKQVADHKNVFINPPRLSDFKNTLTKAGIQAEFCGGALICNG 694
Query: 676 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V I++ +GG +I IEG + +DYY IR LY QF ++
Sbjct: 695 VVAIKRT-----EGG-----KISIEGSVSDDYYLIRKLLYEQFAIV 730
>gi|326920924|ref|XP_003206716.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Meleagris gallopavo]
Length = 782
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 282/816 (34%), Positives = 445/816 (54%), Gaps = 129/816 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + + RRV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 448
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 449 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEELEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---- 752
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRELLYKQYAIV 782
>gi|456753050|gb|JAA74086.1| cleavage and polyadenylation specific factor 2, 100kDa [Sus scrofa]
Length = 782
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR G+VL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGSVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|417404575|gb|JAA49034.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Desmodus rotundus]
Length = 782
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 283/816 (34%), Positives = 441/816 (54%), Gaps = 129/816 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCEDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+ KE +
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-SKEADID 418
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG-------FVPPSTSVAPM 450
+S D ++ D H ++ D+++ G F + PM
Sbjct: 419 SS--------------DESDVEEDTDQPSAHKAKH-DLMMKGEGSRKGSFFKQAKKSYPM 463
Query: 451 FPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAK 505
FP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 464 FPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV----- 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISMTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI 696
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR---- 752
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|449280731|gb|EMC87967.1| Cleavage and polyadenylation specificity factor subunit 2 [Columba
livia]
Length = 782
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 283/816 (34%), Positives = 445/816 (54%), Gaps = 129/816 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLLRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 448
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 449 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYVPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEDTEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVIGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 752
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYKQYAIV 782
>gi|224051637|ref|XP_002200593.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Taeniopygia guttata]
Length = 782
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 282/816 (34%), Positives = 445/816 (54%), Gaps = 129/816 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 448
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTLHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 449 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEDLEMQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPMPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 752
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|383852782|ref|XP_003701904.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Megachile rotundata]
Length = 737
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/775 (35%), Positives = 432/775 (55%), Gaps = 92/775 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNSQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDE----DMDQAAMHIGGDDGKLDEGSASLILDAKPS 507
PF E + D++GE+I P+DY I + D ++ M +D A+ I P+
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEIDDNKENMETKQEDAAHHPEVATDI----PT 512
Query: 508 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 567
K + T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 513 KCIQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-Q 571
Query: 568 HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA-------- 618
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA
Sbjct: 572 SAGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQV 631
Query: 619 ---EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 666
V TE + +L+L P+ P H++ + +LK++D K L+ I EF
Sbjct: 632 CRDAVADTEPDSTIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEF 691
Query: 667 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 692 SGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|47125306|gb|AAH70095.1| Cleavage and polyadenylation specific factor 2, 100kDa [Homo
sapiens]
Length = 782
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 441/817 (53%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSGKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELRDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|391325231|ref|XP_003737142.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Metaseiulus occidentalis]
Length = 741
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 281/778 (36%), Positives = 434/778 (55%), Gaps = 94/778 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGA P+ + + PV++T PVY++G L MYD + S +S
Sbjct: 61 SYPDPLHLGAFPHLRHE--IKCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L D PK V +T+ +RV L +EL + + RLKKE+ K E+ S
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADELEEHVRNE-RLKKEKETKI----EDSSD 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 457
S D L+ +++ A+ + + F P+ MFP E
Sbjct: 412 ESDIEDEALAAAAVIVGASIEDRQS----------------FFQKPTKKSHLMFPLKEEK 455
Query: 458 SEWDDFGEVINPDDY----------IIKDEDM-DQAAMHIG--GDDGKLDEGSASLILDA 504
+WD++GE+IN D + I++ + Q H+ DD K ++ + +
Sbjct: 456 LKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVSDRKDDAKKEQVTEQAEI-- 513
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-TEHLKQ 563
P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 514 -PTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANTAAFYD 572
Query: 564 HCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 620
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW+DAE+
Sbjct: 573 YCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAWLDAEI 632
Query: 621 G--------------KTENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLSSKGIQ 663
+T+ ++ L P+ + PH + + DLK++D K L GI
Sbjct: 633 AEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLVKSGIS 692
Query: 664 VEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EF+GG L C K G ++ +EG L +DY++IR LY Q+ +L
Sbjct: 693 AEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQYAIL 741
>gi|322783252|gb|EFZ10838.1| hypothetical protein SINV_80021 [Solenopsis invicta]
Length = 737
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/774 (36%), Positives = 434/774 (56%), Gaps = 90/774 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG NE+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + G++ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGMNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCSNTQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLDVKRRVKLEGIELEEYQ-------KREKLKQEQMKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGSGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS--ASLILDAKPSKV 509
PF E + D++GE+I P+DY I E + + + + K +E + + +D P+K
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIA-ETVPEIEDNKENVEMKQEETNYHPEVAMDI-PTKC 514
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 VQVSRTMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-QST 573
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV-------- 620
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 574 GARVFVPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQICR 633
Query: 621 -----GKTENGM--------LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFA 667
++EN + L LPI+ P H++ + +LK++D K L+ I EF+
Sbjct: 634 DAIADTESENAIDESDKILTLEPLPIN-EVPGHQTTFINELKLSDFKQVLNKSNIPSEFS 692
Query: 668 GGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 693 GGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|391325233|ref|XP_003737143.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Metaseiulus occidentalis]
Length = 745
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 289/783 (36%), Positives = 433/783 (55%), Gaps = 100/783 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGA P+ + + PV++T PVY++G L MYD + S +S
Sbjct: 61 SYPDPLHLGAFPHLRHE--IKCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK------ASLV 391
GTLAR L D PK V +T+ +RV L +EL + + RLKKE+ K S +
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADELEEHVRNE-RLKKEKETKIEDSSDESDI 415
Query: 392 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMF 451
++E A+ P LSG +S D+ E F P+ MF
Sbjct: 416 EDEALAAAARP--RLSG-----------SSGDLTERQS---------FFQKPTKKSHLMF 453
Query: 452 PFYENNSEWDDFGEVIN-----------PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASL 500
P E +WD++GE+IN P D + Q H+ D K D +
Sbjct: 454 PLKEEKLKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVS--DRKDDAKKEQV 511
Query: 501 ILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-T 558
A+ P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 512 TEQAEIPTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANT 571
Query: 559 EHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW 615
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW
Sbjct: 572 AAFYDYCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAW 631
Query: 616 VDAE----------VGK----TENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLS 658
+DAE VGK T+ ++ L P+ + PH + + DLK++D K L
Sbjct: 632 LDAEIAEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLV 691
Query: 659 SKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
GI EF+GG L C K G ++ +EG L +DY++IR LY Q+
Sbjct: 692 KSGISAEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQY 742
Query: 719 YLL 721
+L
Sbjct: 743 AIL 745
>gi|327259138|ref|XP_003214395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Anolis carolinensis]
Length = 783
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/818 (34%), Positives = 443/818 (54%), Gaps = 132/818 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS L+ GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLDCGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNSSEKVIDMELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPSVHKTKHDLMMKGEGNRKGSFFKQAKKAYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ ++ + + +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKNKLESGLTNGEEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L +
Sbjct: 519 -PTKCVSTTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAES 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYVPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML------------------------------------------------ 628
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELRDDGEDTEMQVETSSSETSTVAQQKAIKSLFGDDDKEICEES 695
Query: 629 SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVG 683
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 EIIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR-- 753
Query: 684 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LCED+YKIR LY Q+ ++
Sbjct: 754 --------TETGRIGLEGCLCEDFYKIRDLLYEQYAIV 783
>gi|387015290|gb|AFJ49764.1| Cleavage and polyadenylation specificity factor subunit 2-like
[Crotalus adamanteus]
Length = 783
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 286/817 (35%), Positives = 446/817 (54%), Gaps = 130/817 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E I +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNILETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L ++L P PK+VLAS L+ GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLADLARVP-SPKVVLASQPDLDCGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDNPSEKVIDIEFRKRVKLEGKELEEYLEKEK------IKKEAAKKLEQSK 413
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
+ + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 414 EA-----------DIDSSDESDAEEDIDQPSVHKTKHDLMMKGEGNRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKD----EDMDQAAMHIGGDDGKLDEGSASLILDAK 505
MFP E +WD++GE+I P+D+++ + ED ++ + G +G E L
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATED-EKNKLESGLTNG---EEPMDQDLSDV 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISAMESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLTESC 578
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ETID TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETIDATSETHIYQVRLKDSLVSSLHFCKAKDAELAWIDGVLD 636
Query: 619 -EVGKTENGML------------------------------------------------S 629
V K + G++
Sbjct: 637 MRVSKVDTGVILEEGELRDDGEDTEMQVDAPASDSSAMAQQKAIKSLFGDDDKEICEESE 696
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +G+Q EF GG L C V +R+
Sbjct: 697 IIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGVQAEFVGGVLVCNNLVAVRR--- 753
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LCED+YKIR LY Q+ ++
Sbjct: 754 -------TETGRIGLEGCLCEDFYKIRDLLYEQYAIV 783
>gi|391325235|ref|XP_003737144.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 3 [Metaseiulus occidentalis]
Length = 754
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/780 (36%), Positives = 430/780 (55%), Gaps = 85/780 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGA P+ + + PV++T PVY++G L MYD + S +S
Sbjct: 61 SYPDPLHLGAFPHLRHE--IKCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L D PK V +T+ +RV L +EL EE R ++ L KE+E+K
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADEL----EEHVRNER-------LKKEKETK 405
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPH-GGRYRDIL--IDGFVPPSTSVAPMFPFY 454
D + D + A + P G D+ F P+ MFP
Sbjct: 406 IEDSSDESDIEDEALAAAAQHHHQDHTKRPRLSGSSGDLTERQSFFQKPTKKSHLMFPLK 465
Query: 455 ENNSEWDDFGEVIN-----------PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILD 503
E +WD++GE+IN P D + Q H+ D K D +
Sbjct: 466 EEKLKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVS--DRKDDAKKEQVTEQ 523
Query: 504 AK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-TEHL 561
A+ P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 524 AEIPTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANTAAF 583
Query: 562 KQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA 618
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW+DA
Sbjct: 584 YDYCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAWLDA 643
Query: 619 E----------VGK----TENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLSSKG 661
E VGK T+ ++ L P+ + PH + + DLK++D K L G
Sbjct: 644 EIAEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLVKSG 703
Query: 662 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
I EF+GG L C K G ++ +EG L +DY++IR LY Q+ +L
Sbjct: 704 ISAEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQYAIL 754
>gi|340713940|ref|XP_003395491.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Bombus terrestris]
gi|340713942|ref|XP_003395492.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Bombus terrestris]
Length = 737
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/773 (35%), Positives = 432/773 (55%), Gaps = 88/773 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 509
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFLEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTTHHPEIPTDIPTKC 514
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQKDTEILAQQA-QSA 573
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 618
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 619 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESDDVIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 669 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|332028657|gb|EGI68691.1| Putative cleavage and polyadenylation specificity factor subunit 2
[Acromyrmex echinatior]
Length = 737
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/775 (35%), Positives = 432/775 (55%), Gaps = 92/775 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG NE+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE-DVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K GE D+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRVKLEGIELEEYQ-------KREKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E G R + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGSRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDY----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPS 507
PF E + D++GE+I P+DY I+ + + ++ + + D+ A I P+
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIAEIVPEVEDNKENVEMKQDEFNYHPEVAVDI----PT 512
Query: 508 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 567
K V + V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 513 KCVQVSRMMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-Q 571
Query: 568 HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV------ 620
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 572 STGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQI 631
Query: 621 -------GKTENG------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 666
++EN +L+L P+ P H++ + +LK++D K L+ I EF
Sbjct: 632 CRDAIADTESENAIDESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNIPSEF 691
Query: 667 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 692 SGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|187608214|ref|NP_001120452.1| cleavage and polyadenylation specific factor 2, 100kDa [Xenopus
(Silurana) tropicalis]
gi|170285004|gb|AAI61233.1| LOC100145546 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 288/810 (35%), Positives = 442/810 (54%), Gaps = 116/810 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T L+G E+ + YL+ +D F FL+DCGW+++F ++ + K +DAVLL
Sbjct: 1 MTSIIKLTTLAGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ ++ST PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYSTIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ HL GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD +NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMISRPSLLITDCFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+TL S+L P PK+VLAS LE GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLTLCHGFSDLARVP-SPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L P + + + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYLEKEK------LKKEAAKKLEQSK 413
Query: 398 ASLGPDNNLSGDPMVIDANNAN-ASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ ++ S ID ++ A D++ + G + F + PMFP E
Sbjct: 414 EADLDSSDDSDAEEDIDQTTSHKAKHDLMMKNEGSRK----GSFFKQAKKSYPMFPAPEE 469
Query: 457 NSEWDDFGEVINPDDYIIKD----EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 512
+WD++GE+I P+D+++ + ED ++ + G +G E L P+K +S
Sbjct: 470 RIKWDEYGEIIKPEDFLVPELQATED-EKTKLESGLTNG---EEPMDQDLSDVPTKCISA 525
Query: 513 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KH 568
++++K + +IDYEGR+DG SIK I++ + P +L++VHG +AT+ L + C K
Sbjct: 526 TESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGGKD 585
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTE 624
+ VYTP++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 586 I--KVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSKVD 643
Query: 625 NGML----------------------------------------------------SLLP 632
G++ +L P
Sbjct: 644 TGVILEEGELKDEGEDSEMQVDTQALDASAIAQQKAIKSLFGDDDKEFSEESEIIPTLEP 703
Query: 633 I-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGG 691
+ S P H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 704 LPSNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---------- 753
Query: 692 SGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LCED++KIR LY Q+ ++
Sbjct: 754 TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>gi|350400562|ref|XP_003485880.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Bombus impatiens]
Length = 737
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/773 (35%), Positives = 432/773 (55%), Gaps = 88/773 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 509
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFLEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETRQEDTTHHPEIPTDIPTKC 514
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQKDTEILAQQA-QSA 573
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 618
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 619 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESDDVIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 669 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|312375001|gb|EFR22454.1| hypothetical protein AND_15244 [Anopheles darlingi]
Length = 772
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 284/800 (35%), Positives = 428/800 (53%), Gaps = 107/800 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FD ++ + K TIDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDDVRFLLDCGWDEKFDQVFIKEIKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD ++S +
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYNMHDFDLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG GI + P AGHL+GGT+WKI K G ED++YA D+N +K
Sbjct: 121 AAFDKIVQLKYNQSVAMKGKGYGITITPLPAGHLVGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + LT VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLTNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L ++L P PK+VLAS A +E+GFS ++F++WA N ++ T R
Sbjct: 301 NPFTFKHLRLCHTMADLAKVP-SPKVVLASSADMESGFSRELFIQWAPQATNSIIITNRS 359
Query: 338 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLAR ++ + +++ + RRV L G EL Y + K L +
Sbjct: 360 SPGTLARDLIDNGGNGRKIEMDVRRRVELEGAELEEYMRTEGEKLNRSIKKRDLDESSSD 419
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
N ++G + VV P G + GF S MFPF+E
Sbjct: 420 SDDELEMNVITGKHDI-----------VVRPEGRSHT-----GFFKSSKKHYAMFPFHEE 463
Query: 457 NSEWDDFGEVINPDDYIIKD-----EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
++D++GE+I P+DY + D D I +D K ++ +LD KP+K V
Sbjct: 464 KIKYDEYGEIIQPEDYRMVDLGPETNGDDNKENGIKTEDIKKEKDEDVTLLD-KPTKCVQ 522
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
+ T++V + FID+EGR+DG S+ ILS + P ++++V GSA T H+ +HC +++
Sbjct: 523 SRKTIEVHAQVQFIDFEGRSDGESLLKILSQLRPRRVIVVRGSAANTAHIAEHCQQNIGA 582
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 620
V+TP E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 583 RVFTPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNKRIDTVA 642
Query: 621 -------------------------------------GKTENGMLSLLP-ISTPAPPHKS 642
K + +L+L P + PPH
Sbjct: 643 EKDASGTGAALSANPVTGAASIATDSAMDVDEVDVLEDKLDKRILTLEPMVPEELPPHNP 702
Query: 643 VLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEG 701
V + +LK+ D K L I EF+GG L C V +R+V T ++ IEG
Sbjct: 703 VFINELKLIDFKQVLMRSNITSEFSGGVLWCSNGTVALRRV----------DTGRVTIEG 752
Query: 702 PLCEDYYKIRAYLYSQFYLL 721
+ EDYYKIR LY Q+ ++
Sbjct: 753 CISEDYYKIRELLYEQYAII 772
>gi|380025109|ref|XP_003696322.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Apis florea]
Length = 737
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/773 (35%), Positives = 431/773 (55%), Gaps = 88/773 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 509
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTAHHPEIPTDIPTKC 514
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQRDTEILAQQA-QSA 573
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 618
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 619 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTEPNDAIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 669 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|147901518|ref|NP_001081123.1| cleavage and polyadenylation specificity factor subunit 2 [Xenopus
laevis]
gi|18203567|sp|Q9W799.1|CPSF2_XENLA RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|4927240|gb|AAD33061.1|AF139986_1 cleavage and polyadenylation specificity factor 100 kDa subunit
[Xenopus laevis]
Length = 783
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 285/812 (35%), Positives = 442/812 (54%), Gaps = 120/812 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T L G E+ + YL+ +D F FL+DCGW+++F ++ + K +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q HL GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+TL S+L P PK+VLAS LE GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLTLCHGYSDLARVP-SPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L P + + + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYVEKEK------LKKEAAKKLEQSK 413
Query: 398 ASLGPDNNLSGDPMVIDA-NNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ ++ S ID + A D++ + G + F + PMFP E+
Sbjct: 414 EADLDSSDDSDVEEDIDQITSHKAKHDLMMKNEGSRK----GSFFKQAKKSYPMFPAPED 469
Query: 457 NSEWDDFGEVINPDDYII------KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 510
+WD++GE+I P+D+++ +DE + GD+ +D+ + + P+K V
Sbjct: 470 RIKWDEYGEIIKPEDFLVPELQVTEDEKTKLESGLTNGDE-PMDQDLSDV-----PTKCV 523
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---- 566
S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG +AT+ L + C
Sbjct: 524 STTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGG 583
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGK 622
K + VYTP++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K
Sbjct: 584 KDI--KVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSK 641
Query: 623 TENGML----------------------------------------------------SL 630
+ G++ +L
Sbjct: 642 VDTGVILEERELKDEGEDMEMQVDTQVMDASTIAQQKVIKSLFGDDDKEFSEESEIIPTL 701
Query: 631 LPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKG 689
P+ S P H+SV + + +++D K L +GI EF GG L C V +R+
Sbjct: 702 EPLPSNEVPGHQSVFMNEPRLSDFKQVLLREGIHAEFVGGVLVCNNMVAVRR-------- 753
Query: 690 GGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LCED++KIR LY Q+ ++
Sbjct: 754 --TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>gi|307189918|gb|EFN74154.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Camponotus floridanus]
Length = 737
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/776 (35%), Positives = 431/776 (55%), Gaps = 94/776 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + EL+ P PK+VLAS +E GFS ++F++W ++ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMVELNQVP-SPKVVLASTPDMECGFSRELFLQWCTNPQNSIIITSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLDVKRRVKLEGIELEEYQ-------KREKLKQEQMKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E G R + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGARGKHDLLVKQESKPGFFKQSKKQYPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKD-----EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
PF E + D++GE+I P+DY I + ED + + E +A + P
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIAETAPEVEDNKENVEMKQEETNHHPEIAADI-----P 511
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q
Sbjct: 512 TKCVQVSRTMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA- 570
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV----- 620
+ V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 571 QSAGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQ 630
Query: 621 --------GKTENG------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVE 665
++EN +L+L P+ P H++ + +LK++D K L+ I E
Sbjct: 631 ICRDAVADTESENAINESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNIPSE 690
Query: 666 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
F+GG L C + AG ++++EG + EDYYK+R L+ Q+ ++
Sbjct: 691 FSGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLFEQYAIV 737
>gi|332223568|ref|XP_003260944.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Nomascus leucogenys]
Length = 782
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/817 (34%), Positives = 438/817 (53%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WDD + P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDDRDLLFRPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCVSTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|270010824|gb|EFA07272.1| hypothetical protein TcasGA2_TC014506 [Tribolium castaneum]
Length = 733
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/770 (34%), Positives = 431/770 (55%), Gaps = 86/770 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSG +E+P Y++ +D L+DCGW++HFD +++ + + TIDAVL+
Sbjct: 1 MTSIIKLQALSGAMDESPPCYILQVDEVRILLDCGWDEHFDMEIIKEMRRHVHTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD + S
Sbjct: 61 SYPDVAHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFQSHYNMEDFDLFTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V +L Y+Q+ L GKG G+ + P AGH++GGT+WKI K G ED+IYA D+N +K
Sbjct: 121 ATFEKVIQLKYNQSVPLKGKGYGLTITPLPAGHMIGGTIWKIMKVGEEDIIYANDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++ ITDA+NA + Q R+ R E I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLFITDAFNATYQQARRRARDEKLMTNILQTLRNNGNVLVAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L+ VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLVYSLALLSNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + EL PK+VLAS +E+GFS ++F++W S+ N ++ T R
Sbjct: 301 NPFQFKHLQLCHSLHELQKV-SSPKVVLASSPDMESGFSRELFLQWCSNPNNSIIITTRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + + RRV L G EL Y++ Q R K+EE + +
Sbjct: 360 SPGTLARDLVDNGGNRQIDLVVKRRVKLEGSELEEYQKSQ-REKREENSSRDEESDSDDD 418
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 457
+ VI + D+V G+ GF + P++PF+E
Sbjct: 419 IEMS----------VI----SKGRHDIVIKQEGKTS----GGFFKVTKKQYPIYPFHEEK 460
Query: 458 SEWDDFGEVINPDDY----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 513
+ D++GE+I P+DY ++ + + ++ + I ++ + E + + PSK +
Sbjct: 461 IKCDEYGEIIKPEDYKLADVVTETEDNKENVVIKKEEEVIPEVAET------PSKCIVLS 514
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 573
TVQV C + +ID+EGR+DG S+ ILS + P ++++V GS E+T +K HC +++ V
Sbjct: 515 RTVQVNCQVQYIDFEGRSDGESLMKILSQLRPRRVIIVRGSPESTNTIKNHCQENLDARV 574
Query: 574 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--------------- 618
+ P E +D T++ Y+V+L++ L+S + F+K D E+AW++A
Sbjct: 575 FAPVRGEVVDATTETHIYQVRLTDALVSQLNFQKAKDAEVAWLNAQIVVRESQLDARRMN 634
Query: 619 ------EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALR 672
EV + E+ +L+L P PH +V + +LK+++ K L+ I EF+GG L
Sbjct: 635 VDNEPMEVDEEESKILTLEPYGDNI-PHDTVFINELKLSEFKQILAKSNINSEFSGGVLW 693
Query: 673 CGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
C + IR+V T ++++EG + EDYYK++ LY Q+ +L
Sbjct: 694 CSNGTLAIRRV----------ETGRVILEGCISEDYYKVKELLYEQYAVL 733
>gi|170046825|ref|XP_001850949.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
gi|167869453|gb|EDS32836.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
Length = 747
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 284/774 (36%), Positives = 437/774 (56%), Gaps = 80/774 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FDP+ ++ L K TIDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + +LGL+ P+++T PVY++G + MYD Y+S +
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLYMSHYNMYDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ L GKG GI + P AGHL+GGT+WK+ K G ED++YA D+N +K
Sbjct: 121 AAFDKIIQLKYNQSVSLKGKGYGITITPLPAGHLIGGTIWKVVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L ++L P PK+VLAS +E+GFS ++FV+WA +V N ++ T R
Sbjct: 301 NPFQFKHLRLCHTMADLAKVP-SPKVVLASSPDMESGFSRELFVQWAGNVNNSIIITCRS 359
Query: 338 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLAR ++ + +++ + RRV L G EL Y + E S++K +
Sbjct: 360 SPGTLARDLIDNGGNGRKLELDVRRRVELEGAELDEYMRTEG-----EKHNRSVIKSDMD 414
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
S + ++ ++ VV P G + GF S MFPF+E
Sbjct: 415 LDSSSDSEDELEMSVITGKHDI-----VVRPEGRSHT-----GFFKSSKKQYAMFPFHEE 464
Query: 457 NSEWDDFGEVINPDDYIIKDEDMDQAA-----MHIGGDDGKLDEGSASLILDAKPSKVVS 511
++D++GE+I D+Y + D D A I +D K ++ +LD KP+K ++
Sbjct: 465 KIKFDEYGEIIQADEYRMVDLGPDGAEDNKENHQIKPEDIKKEKMDDMTVLD-KPTKCIN 523
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
+ V+V + FID+EGR+DG S+ ILS + P ++V+V GS++ T H+ +HC ++
Sbjct: 524 SRKLVEVNAQVQFIDFEGRSDGESMLKILSQLRPRRVVVVRGSSQNTSHISEHCQLNIGA 583
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 620
V++P E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 584 RVFSPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNKQFTSDQ 643
Query: 621 -----------GKTENGMLSLLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
K++ +L+L P ++ P H SV + +LK+ D K L I EF+G
Sbjct: 644 PMDVDQVEITEDKSDKQILTLDPLLNDQLPAHNSVFINELKLIDFKQVLMKANIASEFSG 703
Query: 669 GALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L C + +R++ T ++ IEG L EDYY+IR LY Q+ ++
Sbjct: 704 GVLWCSNGTLALRRI----------DTGKVTIEGCLSEDYYRIRELLYEQYAIV 747
>gi|345480428|ref|XP_001601407.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Nasonia vitripennis]
Length = 739
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/774 (35%), Positives = 433/774 (55%), Gaps = 88/774 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW++ FDP ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGALDESPPCYILQVDELRILLDCGWDEKFDPDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GLS P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLSCPIYATIPVYKMGQMFMYDIYQSRHNMEDFNLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITD++NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDSFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS D+F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRDLFLQWCSNPQNSIIITSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + + ++V L G EL Y K+E +K +K+E+ +
Sbjct: 360 SPGTLARDLVENGGNRNITLEIKKKVRLEGAELEEY-------MKKEKVKQEQLKQEKME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E G + + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGAKGKHDLLVKQEHKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDE--GSASLILDAKPSKV 509
PF E + D++GE+I P+DY I E + +A + + K +E + + P+K
Sbjct: 457 PFVEEKIKVDEYGEIIKPEDYKIA-EVLPEAEDNKENIEVKQEEQVQHPAETMSDIPTKC 515
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L ++V
Sbjct: 516 VQTTRTIAVNASVTYIDFEGRSDGESLQKILAQLRPRRIVLVRGSPKDTELLAAQA-RNV 574
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 618
V+ P ET+D T++ Y+V+L++ L+S + F + GD E+AWVDA
Sbjct: 575 GARVFIPSRGETLDATTETHIYQVRLTDALVSGLNFSRGKGDSEVAWVDALITARDQVCR 634
Query: 619 ----------EVGKTENGM-LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFA 667
+ +TE + L LP++ +++ + +LK++D K L+ I EF+
Sbjct: 635 DVFMDNENEDLIDRTEKILTLEPLPLNEVIRVYQTTFINELKLSDFKQILTKANIPSEFS 694
Query: 668 GGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
GG L C + AG +I++EG L EDYY+++ LY Q+ ++
Sbjct: 695 GGVLWCCNNTIAVRRHEAG---------KIIMEGCLSEDYYRVKELLYEQYAIV 739
>gi|432944969|ref|XP_004083472.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oryzias latipes]
Length = 787
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/817 (34%), Positives = 436/817 (53%), Gaps = 126/817 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F L+DCGW++HF ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDEHFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESINRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGTYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+ L + ++L P PK+VL S LE+GFS ++F++W + KN ++ T R
Sbjct: 301 NPFQFRHLNLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQNSKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVG-----EELIAYEEEQTRLKKEEALKASLVK 392
GTL R L P K + + + +RV L G +++ K E+A + +
Sbjct: 360 TPGTLGRYLIDHPGEKMLDLEVRKRVKLEGKELEEYLEKEKIKKEAAKKLEQAKEVDVDS 419
Query: 393 EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452
+ES D P+ + + + +++ G R F + PMFP
Sbjct: 420 SDESDMEDDLDQ-----PVAVKTKHHDL---MMKSEGSRK-----GSFFKQAKKSYPMFP 466
Query: 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS------LILDAKP 506
+E +WD++GE+I +D+++ + QAA + KLD G + L P
Sbjct: 467 THEERIKWDEYGEIIRLEDFLVPEL---QAA---EDEKSKLDSGLTNGDEPMDQDLSVVP 520
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K +SN ++++ + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 521 TKCISNMENLEIRARITYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCK 580
Query: 567 KHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVG 621
VYTP+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V
Sbjct: 581 AFSKDIKVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVV 640
Query: 622 KTENGML----------------------------------------------------S 629
K + G++
Sbjct: 641 KVDTGVMLEDRVKEEEEDGEMPMETGQEVGIDHNATAVAAQRAMKNLFGEDEKEVSEESD 700
Query: 630 LLPISTPAP-----PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P P H++V + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 701 VIPTLEPLPLTEIPGHQAVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-E 759
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
AG+ G +EG LC+DYYKIR LY Q+ ++
Sbjct: 760 AGRIG---------LEGCLCDDYYKIRELLYQQYAVV 787
>gi|158290938|ref|XP_312464.4| AGAP002474-PA [Anopheles gambiae str. PEST]
gi|157018137|gb|EAA08192.4| AGAP002474-PA [Anopheles gambiae str. PEST]
Length = 745
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 283/777 (36%), Positives = 427/777 (54%), Gaps = 88/777 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW++ FD ++ + K TIDAVLL
Sbjct: 1 MTSIIKMHAISGAMDESPPCYILQVDDVRILLDCGWDEKFDQGFIKEIKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD ++S +
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYNMHDFDLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG GI + P AGHL+GGT+WKI K G ED++YA D+N +K
Sbjct: 121 AAFDKIVQLKYNQSVAMKGKGYGITITPLPAGHLIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L S + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNQSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L ++L P PK+VLAS LE+GFS ++F++WA + N ++ T R
Sbjct: 301 NPFTFKHLRLCHTMADLAKVP-SPKVVLASSPDLESGFSRELFIQWAPNASNSIIITSRS 359
Query: 338 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLAR +++ + +++ + RRV L G EL Y + K L +
Sbjct: 360 SPGTLARDLIENGGNGRKIEMDIRRRVELEGAELEEYMRTEGEKLNRSIKKRDLDESSSD 419
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
N ++G + VV P G + GF S MFPF+E
Sbjct: 420 SDDELEMNVITGKHDI-----------VVRPEGRSHT-----GFFKSSKKNYAMFPFHEE 463
Query: 457 NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS-----------LILDAK 505
++D++GE+I PDDY + +D GGDD K + G + +LD K
Sbjct: 464 KIKYDEYGEIIQPDDYRM----VDLGPETNGGDDNKENGGIKTEDIKKEKEDEVTVLD-K 518
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K V + ++V + FID+EGR+DG S+ ILS + P ++V+V GS T H+ +HC
Sbjct: 519 PTKCVQSRKPIEVNAQVQFIDFEGRSDGESLLKILSQLRPRRVVVVRGSPANTSHIAEHC 578
Query: 566 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----- 620
+++ V+TP E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 579 QQNIGARVFTPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNK 638
Query: 621 --------------GKTENGMLSLLPISTP-APPHKSVLVGDLKMADLKPFLSSKGIQVE 665
K + +L+L P++ PPH V + +LK+ D K L I E
Sbjct: 639 RIDTMEVDDVDTIDDKMDKQILTLEPLAQEDLPPHNPVFINELKLIDFKQILMKSNIASE 698
Query: 666 FAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
F+GG L C V +R+V T ++ IEG + EDYYKIR LY Q+ ++
Sbjct: 699 FSGGVLWCSNGTVALRRV----------DTGRVTIEGCISEDYYKIRELLYEQYAII 745
>gi|145340766|ref|XP_001415490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575713|gb|ABO93782.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 715
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 292/761 (38%), Positives = 420/761 (55%), Gaps = 104/761 (13%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78
+ Y VSIDG N L+DCGWND FD +L+PL+ +A +DAVL+SHPDT HLGALPYA +L
Sbjct: 1 MCYHVSIDGCNILLDCGWNDKFDVDMLKPLAAIAPKVDAVLISHPDTAHLGALPYAFGKL 60
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------------SVTRLTYSQNYHL 119
G++ V++T PV+++G + MYD +L+R+ + + Y Q L
Sbjct: 61 GMNCKVYATLPVHKMGQMYMYDHFLTRQDQGDFQEVFSLDDVDTAFAAFVPVKYMQLSML 120
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
GKG+GI V + AGH LGG VWKI KD EDV+YAVDYN RKE+HLNGT ++ RPA+L
Sbjct: 121 RGKGDGISVMAYAAGHTLGGAVWKIGKDAEDVVYAVDYNVRKERHLNGTSFDAIHRPALL 180
Query: 180 ITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
ITDA + P + R+ D+I +LR GNVL+P+D AGRVLEL+L+LE+ WA+
Sbjct: 181 ITDASSVDREVPNKTTRDAKLIDSILSSLRMNGNVLIPIDPAGRVLELILLLEEKWAQRQ 240
Query: 239 L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
L +Y I LT V+ +T+D+ KS LEWMGD +T +FE R+N F K +TL + EL
Sbjct: 241 LGSYQIVLLTNVAYNTLDFAKSHLEWMGDHVTNAFERRRENPFNTKFLTLCHSMEELQAL 300
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA----RMLQADPPPK 353
P GPK+VLAS SLEAG S +F EWA D NLV+ T + + G+L ++ K
Sbjct: 301 PPGPKVVLASFGSLEAGPSRHLFAEWAEDKSNLVILTGQPEHGSLTEQVVQLSAKATAKK 360
Query: 354 AVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVI 413
+K+T+SRR+PL G EL +E + E K KE E++A L
Sbjct: 361 KIKLTLSRRIPLEGSELAEHESSRKSSTSTELEK----KESETEADL------------- 403
Query: 414 DANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY- 472
R RD L +GF P ST PMFP D+G+ I+ + +
Sbjct: 404 -----------------RRRDTLTEGFTPISTPHGPMFPDEVWEPTMTDYGQEIDIETFH 446
Query: 473 --------IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIF 524
I E M + + D ++E + P+K+V+ + ++ +I
Sbjct: 447 QISQMSSGIPIPEPMKETTVVDDLDVANIEEDEEEEPQEV-PTKLVTETREINIRATIIT 505
Query: 525 IDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY--TPQIEETI 582
+D+EG+ADG+S++T+++ AP ++VLVHG A+ T+ LK L P V P +TI
Sbjct: 506 VDFEGKADGKSVRTLITQAAPRRVVLVHGDAKETKTLKD-ALTAGLPGVQIDAPDAGKTI 564
Query: 583 DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT--ENGMLSLLPIS------ 634
+ TS YK+++S+ L + + Y++ WV+ VGK E G LLP+S
Sbjct: 565 ECTSASATYKIRVSDALFQKANMRDMAGYKVGWVNGVVGKALEEGGAPMLLPVSALNSNA 624
Query: 635 ---TPAPPHK----------SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIR 680
AP + SV +GDL+++D + L+ +GI EFA G L C VT+R
Sbjct: 625 DGMALAPSNATMTKVSAQPGSVFLGDLRLSDFRQALAQEGIIAEFADGVLVCANGRVTVR 684
Query: 681 KVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
K G +++V+EG L +DY+++R LYSQ+ +L
Sbjct: 685 K----------DGDEKLVVEGALSQDYFEVRQILYSQYSIL 715
>gi|328780437|ref|XP_394940.3| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2 [Apis mellifera]
Length = 730
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/761 (35%), Positives = 423/761 (55%), Gaps = 88/761 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIRELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 451
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 509
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTAHHPEIPTDIPTKC 514
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQRDTEILAQQA-QSA 573
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 618
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 619 -EVGKTENG--------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
V TE+ +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESNDAIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 669 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYK 709
G L C + AG ++++EG + EDYYK
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYK 725
>gi|348517622|ref|XP_003446332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oreochromis niloticus]
Length = 787
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/810 (33%), Positives = 438/810 (54%), Gaps = 118/810 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEETALCYLLQVDEFRFLLDCGWDENFSMEIIDVMKRHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLESLSRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+TL + ++L P PK+VL S LE+GFS ++F++W + KN ++ T R
Sbjct: 301 NPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K + + + +RV L G+EL Y E++ K+ + +
Sbjct: 360 TPGTLARYLIDNPGEKMLDLEVKKRVKLEGKELEEYLEKEKLKKETAKKLEQAKEVDVDS 419
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 457
+ ++ V+ + + +++ G R F + PMFP +E
Sbjct: 420 SDESDMDDDLDQSAVVKTKHHDL---MMKGEGSRK-----GSFFKQAKKSYPMFPTHEER 471
Query: 458 SEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 512
+WD++GE+I +++++ +E+ + + D +D+ L P+K +S+
Sbjct: 472 IKWDEYGEIIRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQD-----LSVVPTKCISS 526
Query: 513 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---KHV 569
+++++ + +IDYEGR+DG SIK I++ + P +LV+V G EA+ L + C K +
Sbjct: 527 TESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDI 586
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTEN 625
VYTP+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 587 --KVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDT 644
Query: 626 GML----------------------------------------------------SLLPI 633
G++ ++P
Sbjct: 645 GVILEEGVKDEAEESELAMDIAPDLGTDPVNIAVAAQRAMKNLFGEDEKEFSEESDVIPT 704
Query: 634 STPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQK 688
P PP H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+
Sbjct: 705 LEPLPPNETPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGRI 763
Query: 689 GGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
G +EG LC+DYYKIR LY Q+
Sbjct: 764 G---------LEGCLCDDYYKIRELLYQQY 784
>gi|223648270|gb|ACN10893.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/671 (37%), Positives = 396/671 (59%), Gaps = 66/671 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW++ F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + ++L P PK+VL S LE+GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTL R L +P K + + + +RV L G EL Y E++ R+KKE A K L +E+E
Sbjct: 360 TPGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKE-RMKKEAAKK--LEQEKEVD 416
Query: 398 ASLGPDNNLSGD---PMVIDANNANASADVVEPHGGRYRDILIDG-------FVPPSTSV 447
++++ D P V+ ++ D+++ G F +
Sbjct: 417 VDSSDESDMEDDLELPAVVKT---------------KHHDLMMKGDGIRKGSFFKQAKKS 461
Query: 448 APMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLIL 502
PMFP +E +WD++GE+I P+D+++ +E+ ++ + D +D+ S+S +
Sbjct: 462 YPMFPTHEERVKWDEYGEIIRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKV- 520
Query: 503 DAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK 562
P+K S +++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L
Sbjct: 521 ---PTKCTSTTENLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLA 577
Query: 563 QHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
+ C VYTP+++ET+D TS+ Y+V+L + L+S++ F + D E+AW+D
Sbjct: 578 ESCKAFTKDIKVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLD 637
Query: 619 -EVGKTENGML 628
V K + G+L
Sbjct: 638 MRVVKVDTGVL 648
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+ G
Sbjct: 723 PGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGRIG-------- 773
Query: 698 VIEGPLCEDYYKIRAYLYSQFYLL 721
+EG LC+DYYKIR LY Q+ ++
Sbjct: 774 -LEGCLCDDYYKIRELLYQQYAVV 796
>gi|198452192|ref|XP_002137430.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
gi|198131825|gb|EDY67988.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
Length = 757
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/781 (34%), Positives = 424/781 (54%), Gaps = 84/781 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ D+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAADTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR+LEL +L+ W + Y + L VS + +++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L +++ P GPK+VLAS LE+GF+ D+F++WA + N ++ T R
Sbjct: 301 NPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWAGNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P + +++ + RRV L G EL Y +T+ +K L A EEES
Sbjct: 361 SPGTLAMELVENYAPGRQIELDVRRRVELEGAELEEY--LRTQGEKINPLIAKPEPEEES 418
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ D I+ + D+V GR+ GF + MFP++E
Sbjct: 419 SSESEDD---------IEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKD-------------EDMDQAAMHIGGDDGKLDEGSASLILD 503
++D++GE+IN DDY I D E++ + IG + + L
Sbjct: 466 KIKYDEYGEIINLDDYRIADMNNTEFPPEEQNKENVKKEEPGIGIEQQANGAMDTDVQLL 525
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG+ E T+ + +
Sbjct: 526 EKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTEEGTQVVAK 585
Query: 564 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG-- 621
HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD +G
Sbjct: 586 HCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMR 645
Query: 622 --------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSK 660
E L+L + P H SVL+ +LK++D K L
Sbjct: 646 LKAIDAPPTAMDVTVEQDAAMQEGKTLTLETLEEDEIPVHNSVLINELKLSDFKQILLRX 705
Query: 661 GIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYL 720
AG ++ +EG L E+YYKIR LY Q+ +
Sbjct: 706 XXXXXXXXXXXXXXXXXXXXXXXDAG---------KVAMEGCLSEEYYKIRELLYEQYAI 756
Query: 721 L 721
+
Sbjct: 757 V 757
>gi|213514628|ref|NP_001134023.1| cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
gi|209156194|gb|ACI34329.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/661 (38%), Positives = 392/661 (59%), Gaps = 46/661 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW++ F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L + ++L P PK+VL S LE+GFS ++F++W + KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQEAKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTL R L +P K + + + +RV L G EL Y E++ R+KKE A K KE +
Sbjct: 360 TPGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKE-RMKKEAAKKLEQEKEVDVD 418
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 457
+S D + D + + A D++ G + F + PMFP +E
Sbjct: 419 SS---DESDMEDDLELPAMVKTKHHDLMMKGDG----VRKGSFFKQAKKSYPMFPTHEER 471
Query: 458 SEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 512
+WD++GE+I P+D+++ +E+ ++ + D +D+ S+S + P+K S
Sbjct: 472 VKWDEYGEIIRPEDFLVPELQATEEEKNKLESCMAKGDEPMDQDSSSKV----PTKCTST 527
Query: 513 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP- 571
+++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L + C
Sbjct: 528 TENLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDI 587
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGM 627
VYTP+++ET+D TS+ Y+V+L + L+S++ F + D E+AW+D V K + G+
Sbjct: 588 KVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGV 647
Query: 628 L 628
L
Sbjct: 648 L 648
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+ G
Sbjct: 723 PGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNIVAVRRT-EAGRIG-------- 773
Query: 698 VIEGPLCEDYYKIRAYLYSQFYLL 721
+EG LC+DYYKIR LY Q+ ++
Sbjct: 774 -LEGCLCDDYYKIRELLYQQYAVV 796
>gi|325187176|emb|CCA21717.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
gi|325187319|emb|CCA21858.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
Length = 731
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/757 (36%), Positives = 425/757 (56%), Gaps = 69/757 (9%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV++ +P +YL+ ID L+DCGW D +D LL+PL KVA ID VL+SHP
Sbjct: 4 ITFTPLYGVYSRDPCCAYLLEIDEVCILLDCGWTDQYDTELLKPLQKVADRIDLVLISHP 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS------------------- 104
D H+GALPYA+ +LGL AP++ T PV+RLG + +YD Y +
Sbjct: 64 DMAHIGALPYAIGKLGLKAPIYGTLPVHRLGQINLYDAYQAIVKSDGDFNLYNLDHVDAV 123
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+ +L YS+ L+ GEGIV+ PH +GHL+GG++W+I K+ +++IYAVDYN R E
Sbjct: 124 FENFKQLKYSEKLTLTSSGEGIVITPHASGHLIGGSMWRIMKETDEIIYAVDYNHRSEHV 183
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L +VL SF RP +LITD+ + QP + R+ I KTLR+GGNVLLP DSAGRV
Sbjct: 184 LPKSVLSSFTRPTLLITDSLSLHTKQPKLKDRDSKIMVEILKTLRSGGNVLLPTDSAGRV 243
Query: 224 LELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LEL+ +L+ YW ++ L PI L +S T ++ LEW + I ++F+ R N F
Sbjct: 244 LELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAEAMLEWCNEQIARNFDAGRQNPFQFS 303
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER---GQFG 340
H+ L+ + EL+ PK+VLA+ A+LE G++ ++F+++A+D +N ++FT FG
Sbjct: 304 HIHLIHSIEELEKL-SSPKVVLATSATLECGYAKELFIKYAADTRNSIIFTTTPPPRSFG 362
Query: 341 TLARMLQADPP--PKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 398
AR+L + + V ++++RV L G EL YE ++ R + EA E +A
Sbjct: 363 --ARILDMNKKNDSRVVTCSVAKRVLLEGTELALYEAKERRRLRLEA---------EQRA 411
Query: 399 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 458
D + M I+ ++A EP+ + R G ++ PMF E
Sbjct: 412 KEMEDAAMEDMMMGIEEYESDAED---EPN-TQLRGTFKFGLGQIASIRYPMFFCTEPKV 467
Query: 459 EWDDFGEVINPDDYIIKDEDMDQAAMHI-----GGDDGKLDE---GSASLILDAKPSKVV 510
EWD++GE+I P+D+ +D + A + I G DD D ++D++P K V
Sbjct: 468 EWDEYGEIIRPEDF--RDTSL-SANLLIRKALPGLDDVDRDTTMIDDQDTVVDSRPMKTV 524
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--HCLKH 568
L V V ++++D++G ADGR+I+ LS+V P KL+LVHG+ E T LKQ +
Sbjct: 525 VEHLHVTVNARILWVDFDGIADGRAIRNCLSNVKPRKLILVHGTEETTADLKQFVESTIN 584
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGML 628
+C ++TP++ E ID+ SD YK+ L E L + + F K+G++++A+V +V + +
Sbjct: 585 LCEAIFTPKVMECIDIESDTSIYKLALKESLYTAMNFHKVGNHDVAYVTGQVSTSATSSI 644
Query: 629 -SLLPIS-TPAPPHKSVLVGD--LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
+L P S + HK +L+ D LK+ +K L G +F G L C + V +++
Sbjct: 645 PTLQPRSDSNMTEHKPLLLSDGKLKLDIMKQVLGRAGFDAKFRSGMLICNDGVVLKR--- 701
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ +IV+EG L YY+IR+ LY QF L+
Sbjct: 702 -------AHNNEIVVEGVLSASYYRIRSLLYEQFTLI 731
>gi|393910519|gb|EFO19846.2| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 828
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 287/842 (34%), Positives = 446/842 (52%), Gaps = 135/842 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + S
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 338 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 380
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 381 KKEEALKASLVKEE----------------------ESKASLGPDNNLSGDPMVIDANNA 418
+ E + + + +++ K + N S + A
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 419 NASADVVEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDD 471
+ SA + R DI+ F S PMFP+ E + WDD+GE+I P++
Sbjct: 479 DMSAAQIAEQ--RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEE 536
Query: 472 YIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYE 528
Y+I D + H G DG D L + + PSK +S + ++V C + FID+E
Sbjct: 537 YMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFE 596
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTS 586
GR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D T
Sbjct: 597 GRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDATI 656
Query: 587 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTENG------------ 626
+ Y+V LS+ +MS+++F+ + D E++W+DA + G+T+N
Sbjct: 657 ESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTQNADEENCETNGNKE 716
Query: 627 --------------------------MLSLLPI-STPAPPHKSVLVGDLKMADLKPFLSS 659
L PI S PPH++V V D K++D+K L+S
Sbjct: 717 EVEEMEQDGDEVEGKRLSNLKVAAADTFCLEPILSANIPPHQTVFVNDPKLSDVKQLLAS 776
Query: 660 KGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFY 719
G + EF+ G L +IR+ AG + +EG CEDYYKIR +Y+QF
Sbjct: 777 NGFRAEFSSGILYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRDIVYAQFA 826
Query: 720 LL 721
++
Sbjct: 827 VV 828
>gi|321462132|gb|EFX73157.1| hypothetical protein DAPPUDRAFT_58164 [Daphnia pulex]
Length = 735
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 283/776 (36%), Positives = 421/776 (54%), Gaps = 96/776 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG +++P SYL+ +D F FL+DCGW++ + L K + IDAVLL
Sbjct: 1 MTSIIKFCALSGALDDSPHSYLLKVDDFTFLLDCGWDEKCSEGFIHELKKHVNKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPYA+ +LGL+ PV++T PVY++G + MYD Y S+ +
Sbjct: 61 SYPDQLHLGALPYAVGKLGLTCPVYATVPVYKMGQMFMYDWYQSKDNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V +L YSQ+ L GKG+G+++ P AGH+LGGTVWKI KDG ED+IYAVDYN +K
Sbjct: 121 NSFDKVVQLKYSQSVPLKGKGQGLIITPLPAGHMLGGTVWKIVKDGEEDIIYAVDYNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDAYN L+ QP R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELEKIQRPSLLITDAYNTLYAQPRRRSRDEKLMTNILQTLRGGGNVLVAVDTA 240
Query: 221 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +LE W E L Y + L V+ + ++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLEQLWRNQESGLRAYSLALLNNVAYNVNEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F K++ L E+ G K+VL+S LE GF+ D+F W SD +N ++ T R
Sbjct: 301 NPFGFKYLQLCHTLPEVLRIA-GSKVVLSSCPDLECGFARDLFALWCSDARNSIILTSRS 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTL + L K+V + + +RV L G EL E+ R K+ E
Sbjct: 360 GQGTLGQRLHDQRNLKSVTLELKQRVKLEGAEL-----EEFRRKEREK------------ 402
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG----------FVPPSTSV 447
N LSG + D A +S E GR+ DI++ F S
Sbjct: 403 ------NILSG-IKIKDQTAAESSESEDEVKKGRH-DIVVRSDDKTTGAVQHFFKSSKKH 454
Query: 448 APMFPFYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
MFP++E+ ++D++GE+I P+DY+I + ED + A + + + + P
Sbjct: 455 PTMFPYFEDKIKFDEYGEIIRPEDYVIAESEDHEMADYSVEKPKWEEEPEAEC------P 508
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K +S T+ + ++ ID+EGR+DG SI ++ + P + ++V GS+E+ + L+ CL
Sbjct: 509 TKCISTTTTLAINASIMHIDFEGRSDGESIIKLIESMKPKRTIVVRGSSESCQALQNLCL 568
Query: 567 KHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA------ 618
+ + ETID T + Y+V+L + L+S++ F K D E+AW+DA
Sbjct: 569 STGSSDNKAFIARKGETIDATIESHIYQVRLKDSLLSSLSFGKAKDAEVAWIDARLTYQV 628
Query: 619 ------EVGKTENGML--SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVE 665
++ EN L P+ P P H++ + +LK++D K L GI E
Sbjct: 629 NLTDLRDLDDKENNSLRKEQAPLLEPLEPKDIPGHETSYINELKLSDFKQVLVRNGISSE 688
Query: 666 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
F GG L C G + SG ++ +EG + +DYY++R LY Q+ ++
Sbjct: 689 FIGGVLWCCN-------GNVALRRNESG--RVTLEGCISDDYYRVRELLYEQYAII 735
>gi|328722057|ref|XP_001949295.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 724
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 277/767 (36%), Positives = 429/767 (55%), Gaps = 89/767 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG NE+P YL+ ID F FL+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDELFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD HLG LPY + + GL+ PV++T PVY++G + MYD + S +
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQSLCNAEDFNLFNLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ Y+Q L GKG G+ + +GH++GGT+WKI+K G ED++YAVD+N RK
Sbjct: 121 AAFDKVIQVKYNQIVSLKGKGIGLRIVALASGHMVGGTIWKISKVGEEDIVYAVDFNHRK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG+ LE RP++LI D +NA + QP R+ R E I TLR GNVL+ VD+A
Sbjct: 181 ERHLNGSDLEKLGRPSLLILDCFNAAYAQPRRRSRDEALMTCILTTLRVKGNVLMAVDTA 240
Query: 221 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL+ +L+ W E L Y + FLT VS +T+++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELIHMLDQLWRNKESGLGVYSLVFLTNVSYNTVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F+ KHV L N ++L + PK+VLAS LE GFS ++F+ WAS+ KN ++ T+R
Sbjct: 301 NPFIFKHVKLCHNMNDLKKVSE-PKVVLASHGDLENGFSREVFIMWASNPKNSIILTDRA 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + +K+ + +RVPL EL EE + +KE K E SK
Sbjct: 360 APGTLARNLIDGGSDRNIKLIVKKRVPLDENEL---EEYNIKYEKE--------KMEGSK 408
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP------MF 451
DP+ D S D E G+Y D+L+D S + MF
Sbjct: 409 M----------DPVSSD------SEDEQEVMRGKY-DLLVDADTLSSKKSSKKEFSHNMF 451
Query: 452 PFYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 510
P+YE+ ++D +GE+I P+D+I D +D+ + ++E ++ PSK V
Sbjct: 452 PYYEDKCKFDQYGEIIKPEDFIKFDVAPVDKPTLDEPNKKSDIEENLYNV-----PSKCV 506
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC 570
E + V +++ID+EGR+DG SIK ++ + P +L+LV G++ +T+ + +
Sbjct: 507 KYEQNIYVAAKIVYIDFEGRSDGESIKQMVLALKPRRLILVRGNSYSTKVVYNFAKVFID 566
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE----------- 619
V+TP+I + ++VT++ Y+V+L++ L+S + FKK + +A+++A+
Sbjct: 567 GKVFTPRIGQCMNVTTESHIYQVRLTDTLLSKINFKKGPNGNLAYMNAKLKLNSRDTVME 626
Query: 620 ----VGKTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 674
+ + + + +L P++ PHK+V + LK++D K LS K I E + G L C
Sbjct: 627 VDNVISEKNDQIFTLEPLADHEIHPHKTVFINRLKLSDFKQILSKKNIPCELSKGVLWCC 686
Query: 675 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ +G ++++EG + YY IR+ LYSQF ++
Sbjct: 687 NRTVCVRRNSSG---------KVLMEGIISRQYYYIRSLLYSQFIII 724
>gi|198428144|ref|XP_002129804.1| PREDICTED: similar to cleavage and polyadenylation specific factor
2 [Ciona intestinalis]
Length = 784
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/811 (32%), Positives = 425/811 (52%), Gaps = 117/811 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ TPL+G NE P YL+ +D F FL+DCGW++ FD ++ + K S +DA+LL
Sbjct: 1 MTSIIKFTPLAGALNEGPNCYLLQVDEFTFLLDCGWSEDFDMDVINNVMKHISQVDAMLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
+ PD H+GALPY ++GL+ +++T PVY++G + +YD Y S +
Sbjct: 61 TFPDIQHIGALPYLAGKIGLNCAIYATVPVYKMGQMFLYDLYQSHHNIEDFDKFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE--DVIYAVDYNRR 160
+T++ ++Q L KG G+ + P AGH++GGT WKI KD E +++YAVD+N +
Sbjct: 121 SAFDKITQVKHNQTITLKDKGLGLSITPVHAGHMIGGTAWKIIKDDEEGEIVYAVDFNHK 180
Query: 161 KEKHLNG-TVLESFVR------PAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGN 212
+E+HLNG ++ ES P ++ITD YNA++ Q R+ R E I +T+R GN
Sbjct: 181 RERHLNGCSLFESSGETWSGKPPQLMITDGYNAMYQQARRKLRDEQLLTRIIETMRGDGN 240
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
VL+ VD+AGRVLEL ++L+ W + Y + + V+ + +++ K +EWM D I
Sbjct: 241 VLIAVDTAGRVLELAILLDQLWRDTRSGLCAYSLAMINNVTYNVVEFAKFMVEWMSDKII 300
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 329
SF R+N F KH+ L N +L P PK VLAS A +E GF+ +F+ WA+D +N
Sbjct: 301 NSFTDQRNNPFHFKHLKLCHNLGDLAQVPQ-PKCVLASTADMECGFARQLFIRWAADPRN 359
Query: 330 LVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS 389
V+ T R GTL+R L DP +K+ M +RVP++GEEL YE + A KA+
Sbjct: 360 TVIITSRSTKGTLSRTLVDDPTVSRLKLEMKKRVPIIGEELDQYE------RNRAAKKAT 413
Query: 390 LVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP 449
VK E ++S D + + +P+ N D + P+ + F P
Sbjct: 414 EVKVFEEESS---DESDAEEPV----NTIQNRHDFIVPNEVPKKS---GSFFKQLKKTFP 463
Query: 450 MFPFYENNSEWDDFGEVINPDDY----IIK-DEDMDQAAMHIGGDDGKLDEGSASLILDA 504
M+PF E +WD++GE+INPDD+ II+ DE++ + + K D +++
Sbjct: 464 MYPFIEPRIKWDEYGEIINPDDFRMSNIIQVDEEVKAEIIKTKMEVDKTDSNPLQSVVEE 523
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K V+ + +++KC + FID+EGR+DG S+ I+ + P ++++V + T++ +
Sbjct: 524 APTKCVTETVFIEMKCTISFIDFEGRSDGESMLKIIQQIKPREVIVVRADTKTTKYYAEA 583
Query: 565 CLKHVCP---HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 621
K + V+TP + E +D T + Y+V+L + L+ + F D EI W+DA+V
Sbjct: 584 IRKALTSSGVEVFTPAVNEVVDTTKERHIYQVKLKDSLVGTLRFSNARDSEICWIDAKVD 643
Query: 622 KTEN----------------------------------------------GMLSLLPIST 635
+EN + +++P
Sbjct: 644 CSENVNDSSKVLTDSQIREAKEIADKEEFTMDHDGEDIIASQKSSNAINTQVANIIPSLE 703
Query: 636 P-----APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 690
P P H++ + +L+++D K L+ +G Q EF GG L C + IR+ Q+G
Sbjct: 704 PLSIEDTPGHQTCFINELRLSDFKQVLTKEGYQAEFIGGVLVCNNMLAIRR----NQQG- 758
Query: 691 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
I +EG L E+YY IR LY Q+ ++
Sbjct: 759 -----HIDLEGTLTEEYYAIRDLLYQQYAVV 784
>gi|312084310|ref|XP_003144223.1| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 837
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 284/849 (33%), Positives = 447/849 (52%), Gaps = 140/849 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + S
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 338 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 380
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 381 KKEEALKASLVKEE----------------------ESKASLGPDN-----------NLS 407
+ E + + + +++ K + N +
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 408 GDPM---VIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFG 464
G+P+ + D + A + ++ F S PMFP+ E + WDD+G
Sbjct: 479 GNPLKSFLTDMSAAQIAEQRSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYG 538
Query: 465 EVINPDDYIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCL 521
E+I P++Y+I D + H G DG D L + + PSK +S + ++V C
Sbjct: 539 EIIRPEEYMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCK 598
Query: 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIE 579
+ FID+EGR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++
Sbjct: 599 VDFIDFEGRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLG 658
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTENG----- 626
E +D T + Y+V LS+ +MS+++F+ + D E++W+DA + G+T+N
Sbjct: 659 EIVDATIESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTQNADEENC 718
Query: 627 ---------------------------------MLSLLPI-STPAPPHKSVLVGDLKMAD 652
L PI S PPH++V V D K++D
Sbjct: 719 ETNGNKEEVEEMEQDGDEVEGKRLSNLKVAAADTFCLEPILSANIPPHQTVFVNDPKLSD 778
Query: 653 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
+K L+S G + EF+ G L +IR+ AG + +EG CEDYYKIR
Sbjct: 779 VKQLLASNGFRAEFSSGILYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRD 828
Query: 713 YLYSQFYLL 721
+Y+QF ++
Sbjct: 829 IVYAQFAVV 837
>gi|384251490|gb|EIE24968.1| hypothetical protein COCSUDRAFT_83661 [Coccomyxa subellipsoidea
C-169]
Length = 731
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 291/754 (38%), Positives = 439/754 (58%), Gaps = 68/754 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
+QVTPL G + P+ L+ ID L+DCGW+D +D LL PL V + VL++HPD
Sbjct: 3 IQVTPLYGAGTDGPVCNLLQIDQLLLLLDCGWDDAYDMELLHPLKNVIGHVHGVLITHPD 62
Query: 65 TLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT--------------- 109
HLGALPY + +L LS PV++T PV ++G + MYDQY++R +VT
Sbjct: 63 PAHLGALPYLVGRLKLSVPVYATFPVQKMGEIFMYDQYVTRHAVTDFAAFNLDDVDEAFA 122
Query: 110 RLT---YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRKEKHL 165
R+T Y Q L G GEG + P AGHLLGG +W+IT + E ++YAV YN +KE+HL
Sbjct: 123 RITPLKYQQTLTLEGPGEGFSITPFAAGHLLGGCIWRITTPEEEHIVYAVHYNHKKERHL 182
Query: 166 NGTVLES-FVRPAVLITDAYNALHNQPPRQQREM---FQDAISKTLRAGGNVLLPVDSAG 221
NG VL+S F RPA+LITDA N++ R + + ++A+ T+RA GNVL+PVD+AG
Sbjct: 183 NGGVLDSAFSRPAILITDADNSMLEGAVRSRETLDKELREAVMATVRANGNVLIPVDAAG 242
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R+LEL+L+LE++W + L YP+ L+ ++ + ++ S LEWM I + FE ++ N F
Sbjct: 243 RLLELVLLLEEHWDKQKLTYPLVLLSPMAYNVLELASSQLEWMSHYIGQMFERTKQNPFS 302
Query: 282 L---KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
+ K + L EL P GP++V+A++ SLEAG S + EWA++ NL+LF R
Sbjct: 303 VRQAKKLKLCRTTEELAKLPPGPRVVMATLPSLEAGASRQLLTEWATNPANLILFPGRAP 362
Query: 339 FGTLARMLQAD---PPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
TLA +LQ + P V + +S+R+PL G EL A++E QT A +++EEE
Sbjct: 363 NDTLAGLLQQNMQSGQPFTVPIRLSKRMPLQGAELQAWQESQT---------AHVLEEEE 413
Query: 396 SKA----SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMF 451
A S+G + + D + + S+ P +LIDGFV P +VAPMF
Sbjct: 414 EPAISTESIGKISRATSDGAKLAPASLQPSSMASLPAA----RVLIDGFVVPEGAVAPMF 469
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 511
P ++++E+DD+G +++P ++ QA +D+G S + P+KVV
Sbjct: 470 PSEDDDNEYDDYGALLHPGEF-------QQAGGTATAMSMDMDDGEDSPEEEEVPTKVVF 522
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKH 568
++ + V L+ +DY+GR+DGRS++ IL VAP LVLVHG+ +AT+ L+ C L
Sbjct: 523 EDIKLPVHARLLLLDYDGRSDGRSMRLILGKVAPRHLVLVHGTPQATQVLRDACGDDLYS 582
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGKTENGM 627
V V+ P ET+DV++ +++V LS+ L++ + +++G +Y +AWV V +G
Sbjct: 583 VNGQVHCPANGETVDVSAGTSSFQVGLSDGLLAQLRMRQMGSEYALAWVHGVVASVNSGA 642
Query: 628 L-SLLPISTPAPP--HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
L +LP S A V +GD K++DLK L +GI F G L+C V++++ P
Sbjct: 643 LPEVLPASASAGEALEGGVFIGDAKLSDLKTALEKEGIAAVFVEGNLQCSGSVSVKRTVP 702
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
+ GG I++EGPL +DYY+IR LYSQ+
Sbjct: 703 --EDGG------IILEGPLSDDYYRIRTVLYSQY 728
>gi|193676458|ref|XP_001951701.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 729
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 276/775 (35%), Positives = 427/775 (55%), Gaps = 100/775 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG NE+P YL+ ID F FL+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDERFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD HLG LPY + + GL+ PV++T PVY++G + MYD + S +
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQSLCNAEDFDLFNLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ Y+Q L GKG G+ + AGH++GGT+W+I+K G ED++YAVD+N +K
Sbjct: 121 AAFDKVIQVKYNQIVSLKGKGIGLRIVALPAGHMVGGTIWRISKVGEEDIVYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG+ LE RP++LI D +NA ++QP R+ R E I TLRA GNVL+ +D+A
Sbjct: 181 ERHLNGSDLERLGRPSLLILDCFNAAYSQPRRRSRDEALMTCILTTLRAKGNVLMAIDTA 240
Query: 221 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL+ +L+ W E L Y + FLT VS +T+++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELMHMLDQLWRNKESGLGVYSLVFLTNVSYNTVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KHV L N ++L+ + PK+VLAS LE+GFS ++F+ WAS+ KN ++ T+R
Sbjct: 301 NPFFFKHVKLCHNMNDLNKVSE-PKVVLASNGDLESGFSREVFIMWASNSKNSIILTDRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L + + +K+ + +RVPL EL EE EE ++AS +
Sbjct: 360 APGTLARDLIDEGGDRNIKLIVKKRVPLDDNEL----EEYNIKHDEEKMEASKI------ 409
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG-----FVPPSTSVAPMFP 452
DP+ D S D E G+Y D+L+D PMFP
Sbjct: 410 -----------DPVSSD------SEDEQEVMRGKY-DLLVDADTLSSKKSSKKEFPPMFP 451
Query: 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS------LILDAKP 506
+YE ++D +GE+I +D+I D A GD +DE + L+ P
Sbjct: 452 YYEEKCKFDPYGEIIKQEDFI----KFDVAP----GDKPTVDEQNKKSDEDEEEDLNDVP 503
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
SK V E + V ++ ID+EGR+DG SIK I+ + P +L+LV G+ +T+ +
Sbjct: 504 SKCVEYEQNIYVAAKIVHIDFEGRSDGESIKQIVLALKPRRLILVRGNPYSTKVVYNFAK 563
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG----- 621
+ V+TP+I + ++VT++ Y+V+L++ L+S + FKK + ++A+++A++
Sbjct: 564 VFIDGKVFTPRIGQCLNVTTESHIYQVRLTDALLSKINFKKGPNGDLAYMNAKLKLNSRD 623
Query: 622 --------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 666
+ ++ + +L P++ P K+V + LK++D K LS I E
Sbjct: 624 TVMEVDNVVSEKMPRIDDQIFTLEPLAEHEIHPRKTVFINRLKLSDFKQILSKNNIPCEL 683
Query: 667 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ G L C + +G ++++EG + YY IR+ LYSQF ++
Sbjct: 684 SKGVLWCCNRTVCVRRNSSG---------KVLMEGIISRQYYYIRSLLYSQFIII 729
>gi|170581110|ref|XP_001895540.1| cleavage and polyadenylation specificity factor [Brugia malayi]
gi|158597460|gb|EDP35606.1| cleavage and polyadenylation specificity factor, putative [Brugia
malayi]
Length = 831
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/846 (33%), Positives = 447/846 (52%), Gaps = 140/846 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + S
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLMRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 338 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 380
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLDGVELENYRAKKRAEEREATRI 418
Query: 381 KKEEALKASLVKE------EESKASLGPDNNLSGDPMVIDANNANASADV---------- 424
+ E + + + +++ + A + SG +++ N+ ++
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSG---ILNGKMTNSKRNIASSFSASTTT 475
Query: 425 --------VEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINP 469
+ R DI+ F S PMFP+ E + WDD+GE+I P
Sbjct: 476 STTADLSAAQIAEQRSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRP 535
Query: 470 DDYIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFID 526
++Y+I D + H G D D L + + PSK +S + ++V C + FID
Sbjct: 536 EEYMIVDTPVVPQIPPEHKDGTDSTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFID 595
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDV 584
+EGR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D
Sbjct: 596 FEGRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDA 655
Query: 585 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTEN----------- 625
T + Y+V LS+ +MS+++F+ + D E++W+DA + G+T N
Sbjct: 656 TIESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTRNTAEENLETNGN 715
Query: 626 -----------------------------GMLSLLP-ISTPAPPHKSVLVGDLKMADLKP 655
L P +S PPH++V V D K++D+K
Sbjct: 716 KEEEVEEMEQDDSDQVEGKRLSNLKVAAADTFCLEPMLSANIPPHQAVFVNDPKLSDMKQ 775
Query: 656 FLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L+S G + EF+ G L +IR+ AG + +EG CEDYYKIR +Y
Sbjct: 776 LLASNGFRAEFSSGVLYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRDIVY 825
Query: 716 SQFYLL 721
+QF ++
Sbjct: 826 AQFAVV 831
>gi|324503279|gb|ADY41427.1| Cleavage and polyadenylation specificity factor subunit 2 [Ascaris
suum]
Length = 841
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 286/853 (33%), Positives = 449/853 (52%), Gaps = 144/853 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVFFLLDCGWDERFDMAYIEAVKRRVPQINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLT-------- 112
S+ D LHLGALPY +++ G++ P+++T PVY++G + +YD SV T
Sbjct: 61 SYADILHLGALPYLVRKCGMNCPIYATVPVYKMGQMFLYDWVNGHTSVEDFTLFNLDDID 120
Query: 113 ----------YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N +K
Sbjct: 121 GAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHKK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP ++ITDA+NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLMITDAFNALYNQPRRKQRDEQLVTKLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR+LE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D I KSFE R
Sbjct: 240 GRILEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKILKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E GFS +IF+EW +DV+N V+ T R
Sbjct: 300 NPFQFRHVQLCHTHMDLLRI-RSPKVVLVSGLDMECGFSREIFLEWCADVRNTVIVTGRS 358
Query: 338 QFGTL-ARMLQ-----ADPPP---KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA--- 385
TL AR+++ A+ P + + + + RR+ L G EL Y ++ ++E A
Sbjct: 359 GDRTLGARLIRMAEQMAENPSTVNRNLTLEVKRRIRLEGVELENYRAKKRADEREAARKR 418
Query: 386 LKASL--VKEEESKASLGPDNN----LSGDPMVIDANNANA--------SADVVEPHGG- 430
L+AS + E +++S D+ ++G+ M I A NA + + HGG
Sbjct: 419 LEASRRNARLEHAESSDDSDDETVMVVTGNNMGISAGNAKSLTTNTPSRHSSSTSIHGGN 478
Query: 431 ------------------RYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGE 465
R DI+ F + P+FP+ E + WDD+GE
Sbjct: 479 PTSPINSTTLTPAQLAEQRSHDIMWKWEQQQKSSFFKQNKKAFPVFPYIEEKTRWDDYGE 538
Query: 466 VINPDDYIIKDEDM------DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQV 518
+I P++Y+I D + ++ A I G + + + + P+K +S ++V
Sbjct: 539 IIRPEEYMIVDSSVVPHITTERMAESIPGTPHSENGQTVPHYEEREWPTKCISQITKMEV 598
Query: 519 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTP 576
C + FID+EGR+DG S+K ILS V P +LV+VHGSA AT HL Q+ + V ++TP
Sbjct: 599 LCKVEFIDFEGRSDGESMKKILSQVKPKQLVIVHGSAAATRHLAQYASETGIVQGKIFTP 658
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------- 622
++ E +D T + Y+V LS+ LMS+++F+ + D E++W+DA + +
Sbjct: 659 RLGEIVDATIESHIYQVTLSDALMSSLIFQTVKDAELSWLDARIARRKAITGATSAVKEN 718
Query: 623 TENG---------------------------------MLSLLPI-STPAPPHKSVLVGDL 648
E G L P+ S+ P H++V V D
Sbjct: 719 REEGEEMPNEDETMEQGGEEETGDGERLSNKKAAAADTFCLEPMPSSNIPSHQAVFVNDP 778
Query: 649 KMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 708
K++D+K L + G EF+ G L +IR+ AG + +EG EDYY
Sbjct: 779 KLSDMKQLLMANGFHAEFSSGVLYINNVASIRR-NEAG---------RFHVEGCASEDYY 828
Query: 709 KIRAYLYSQFYLL 721
KIR +Y+QF ++
Sbjct: 829 KIRDIVYAQFAIV 841
>gi|440797154|gb|ELR18249.1| cleavage and polyadenylation specificity factor subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 799
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/744 (37%), Positives = 412/744 (55%), Gaps = 82/744 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M V+ TP+ G E P L+ ID + L+DCGW+D FD L+ + IDAVLL
Sbjct: 1 MTAIVKYTPIYGSKTEGPFCSLLEIDEYRILLDCGWDDKFDIEALENVKAYIPKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLS 120
SHPD LHL + + L F+ E +L YSQ+ L+
Sbjct: 61 SHPDLLHLKDEDFDVWNLDDVDAAFNEE------------------RFEQLKYSQHVRLT 102
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
G+G GI + P+V GH++GGTVWKITK+ E+++YAVDYN +KE+HLN TVLE+ RP +LI
Sbjct: 103 GRGAGIELTPYVGGHMIGGTVWKITKETEEILYAVDYNHKKERHLNPTVLETLNRPTLLI 162
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
TDA+N L Q R+ R+M D KTL+ GNVLLP D+AGRVLELLL + +WA + L
Sbjct: 163 TDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRL 222
Query: 240 N-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ Y + L + +TI++ KS LEWM ++ KSF+ R N F K V L + EL+ P
Sbjct: 223 SQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEALP 282
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVT 358
P +VLA+ ASLE GF+ D+FVEW+S+ ++ V+FT+R Q GTL ++ PP A+ +
Sbjct: 283 K-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQQPP-ALGLE 340
Query: 359 MSRRVPLVGEELIAYEEEQTRLKKEEALK-----------ASL--VKEEESKASLGPDNN 405
+ RRVPL G EL + ++Q K + L+ ASL ++EEE + + + +
Sbjct: 341 LHRRVPLEGAELREWRQKQQEEKARKLLEEQQKVHGDLCGASLKHLQEEEKRKNEAEEID 400
Query: 406 LSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST------SVAPMFPFYENNSE 459
D + + + S + + + D F P ++ V P+FP + +
Sbjct: 401 EEEDDVSLLFHTTAHSFNPFKEN--------CDWFAPKNSGNYYEPQVCPLFPHEDVRQK 452
Query: 460 WDDFGEVINPDDYI----IKDEDMDQAAMHIGGDDGKLDEGSASLILDAK-----PSKVV 510
+DD+G++I+ ++ +D + +++ G+ G E A P+K +
Sbjct: 453 FDDYGQMIDLQHFLHPPSQRDFPLTADSLNARGEGGDKMETEGGEGQAAAEEEAVPTKCI 512
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKH 568
+ E V+VKC + +ID+EGR+DGRSIKTIL+HVAP K+VL H EHLK++C +
Sbjct: 513 TVERKVEVKCTIKYIDFEGRSDGRSIKTILAHVAPRKMVLFH-----VEHLKEYCADTRT 567
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV--LFKKLGDYEIAWVDAEVGKT--- 623
VC VYTP ET+D+TSD Y+V++ E L+ ++ F K+GD E+A+V+ + T
Sbjct: 568 VCNSVYTPDDNETLDLTSDTNIYRVKVKEALLKSLEEEFMKVGDREVAYVNGVLNPTGFA 627
Query: 624 ---ENGM---LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYV 677
GM L P PPH V VG+++++D K L+ G + EFA G L C V
Sbjct: 628 PRRGEGMELELEQAPEEI-IPPHDPVFVGEVRLSDFKDILTQHGFRTEFAAGVLICNGVV 686
Query: 678 TIRKVGPAGQKGGGSGTQQIVIEG 701
++K + G SG +I + G
Sbjct: 687 MLKK-----ETEGLSGRSKISVNG 705
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
PPH V VG+++++D K L+ G + EFA G L C V ++K + G SG +I
Sbjct: 721 PPHDPVFVGEVRLSDFKDILTQHGFRTEFAAGVLICNGVVMLKK-----ETEGLSGRSKI 775
Query: 698 VIEGPLCEDYYKIRAYLYSQFYLL 721
+ G LC+DY+ +R LYSQF++L
Sbjct: 776 SVNGALCDDYFAVRDLLYSQFHIL 799
>gi|328768987|gb|EGF79032.1| hypothetical protein BATDEDRAFT_12823 [Batrachochytrium
dendrobatidis JAM81]
Length = 719
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 274/756 (36%), Positives = 410/756 (54%), Gaps = 72/756 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ T + G ++ PL YL+ ID L+DCGW++ DPS L L KVA IDA+LL
Sbjct: 1 MSSFVKFTAILGAHDQGPLCYLLEIDEAKLLLDCGWSESTDPSQLAALEKVARQIDALLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SH D HLGA PYA K LGL+ PVF+T PV+ +G M+D ++ +
Sbjct: 61 SHADLDHLGAFPYAAKHLGLTCPVFATTPVHDMGQACMHDLIQAKLNQEEFHLFTKDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
T L YSQ L+GK +GI V+ AGH +GGT+WKI KD E+++YAVDYN RKE
Sbjct: 121 TAFAKTTILRYSQPTVLTGKCQGITVSAFSAGHTIGGTIWKIKKDTEEIVYAVDYNHRKE 180
Query: 163 KHLNGTVL---ESFVRPAVLITDAYNALHNQP-PRQQRE-MFQDAISKTLRAGGNVLLPV 217
+HLNGTVL ++ +RP +LITDA+N L P PR+QR+ ++I+ L GNVL+P
Sbjct: 181 RHLNGTVLLSTDTLIRPTLLITDAFNTLMPDPAPRKQRDAALIESIATVLSEHGNVLIPS 240
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
DS+ RVLELL +L+ +WA H Y + FLT S + I+ KS LEWMGD I ++F T+R+
Sbjct: 241 DSSTRVLELLYMLDQHWAFHRYTYHLVFLTNQSQNAINLAKSTLEWMGDGIAQAF-TARE 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
F K + ++ + ELDN GPK+VLAS + GFS D+ +EW SD +N+++ +R
Sbjct: 300 LPFEFKCLKMIHSIDELDNLM-GPKVVLASFPGMMTGFSQDLLIEWGSDPRNMIILPDRA 358
Query: 338 QFGTLARMLQAD--PPPKAVKVTMSRRVPLVGEELIAY------EEEQTRL--KKEEALK 387
Q GTL RM+ D K + + ++VPLVG+EL Y EEE RL + L
Sbjct: 359 QPGTLGRMMFDDWFESAKMADMNLKKQVPLVGDELDEYMSKKQAEEEHARLMHSHQLGLD 418
Query: 388 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSV 447
S + + + D V D N + GF + +
Sbjct: 419 DSSDSDMSDTEEVAKPQPMQFDIYVKDVNRST-------------------GFFKQAQAF 459
Query: 448 APMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPS 507
M+P +E+ DD+GE+I+ D Y + ++ ++ + +E + + PS
Sbjct: 460 -KMYPVHEHRPRVDDYGELIDLDMYAKL-----ELQHNLAPNEPEENEKVVAPVKKVVPS 513
Query: 508 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 567
K V ++ + +KC + +ID+EGR+DG+S+K I++ VAP KL+ VHG +T ++C
Sbjct: 514 KYVVEDILLSLKCRMQYIDFEGRSDGKSVKNIIAQVAPRKLLFVHGDKASTMAFAEYCRT 573
Query: 568 H--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 625
+ + VY P E ++V+S ++V L++ LM + I D+ G T
Sbjct: 574 NESLTNEVYDPVQGECVNVSSATNLFRVVLTDTLMDEYSLSYITGV-IKLQDSVTGGT-R 631
Query: 626 GMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
ML ++P+ T ++VG+ K++ ++ L S+G + FA G L E + K
Sbjct: 632 AMLEVVPVETQLTRQHVMVVGEAKLSQVRKVLDSQGFRTAFASGVLVVNEGKALIK---- 687
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ G G+ + +EG + DYYKIR LYS +L
Sbjct: 688 --RSGTDGS--LALEGSISRDYYKIRELLYSTLAIL 719
>gi|13938095|gb|AAH07163.1| Cpsf2 protein, partial [Mus musculus]
Length = 732
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/761 (34%), Positives = 408/761 (53%), Gaps = 127/761 (16%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------- 107
IDAVLLSHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 5 IDAVLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLF 64
Query: 108 -----------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED-VIYAV 155
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDGE+ ++YAV
Sbjct: 65 TLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAV 124
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVL 214
D+N ++E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL
Sbjct: 125 DFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVL 184
Query: 215 LPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKS 271
+ VD+AGRVLEL +L+ W +Y L VS + +++ KS +EWM D + +
Sbjct: 185 IAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRC 244
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
FE R+N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN +
Sbjct: 245 FEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSI 303
Query: 332 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLV 391
+ T R GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 304 ILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-- 361
Query: 392 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPP 443
S + + ++ ++ DV +P + + D+++ G F
Sbjct: 362 ---------------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQ 406
Query: 444 STSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASL 500
+ PMFP E +WD++GE+I P+D+++ + + +++ + G +G E
Sbjct: 407 AKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQ 463
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
L P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++
Sbjct: 464 DLSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQD 523
Query: 561 LKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+
Sbjct: 524 LAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWI 581
Query: 617 DA----EVGKTENGML-------------------------------------------- 628
D V K + G++
Sbjct: 582 DGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELG 641
Query: 629 ---SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIR 680
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R
Sbjct: 642 EETEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVR 701
Query: 681 KVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 702 R----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 732
>gi|281208327|gb|EFA82503.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 738
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 278/762 (36%), Positives = 431/762 (56%), Gaps = 65/762 (8%)
Query: 1 MGTSVQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPLSG NE +P YL+ ID F L+DCGWN D S+L+PL VA+ IDA+L
Sbjct: 1 MTSIIKFTPLSGGANEISPPCYLLEIDEFTILLDCGWNHSLDLSILEPLKAVANKIDAIL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----------------- 102
LS+PD HLGALPYA+ +LGL+ ++ T P++++G + +YD Y
Sbjct: 61 LSYPDIEHLGALPYAVSKLGLTGTIYGTTPIFKMGQMFLYDLYSNHMAQEDFDRFDLDDV 120
Query: 103 ---LSRRSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
++ L++SQ+Y L+ I + P+ AGH++GG+VWKITK+ + +IYA+D+N
Sbjct: 121 DLCFDKKRFKELSFSQHYTLTTPSSATITITPYSAGHMIGGSVWKITKETDTIIYAIDFN 180
Query: 159 RRKEKHLNG--TVL--ESFVRPAVLITDAYNALHNQPPRQQREMFQD-----AISKTLRA 209
RKE HL G VL + ++P LITDA +A PP + + +D + KTLR
Sbjct: 181 HRKEGHLEGFFPVLQGQDLLKPTHLITDARHA--RTPPTALKRIEKDKALYSTLLKTLRE 238
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GGNVLLPVD+AGR LELL +E +WA+ L+ Y + FL V+ + ++ KS LE+M +
Sbjct: 239 GGNVLLPVDTAGRSLELLQSIESHWAQQRLSGAYTVIFLNNVTYNVCEFAKSQLEFMSTA 298
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWAS 325
FE +N F K++ L + +L+N +VLAS LE+G++ ++F++WA+
Sbjct: 299 AGLKFEQRNENIFAFKNIKLCHSIYDLENLMGLSSNYVVLASGKDLESGYARELFIKWAA 358
Query: 326 DVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 385
D KNL+L T+ + GTLA L D P++V + + RRV L GEEL AYEEE+ R K+EE
Sbjct: 359 DSKNLILMTDSVEEGTLASHLLND-QPESVTLELGRRVELEGEELRAYEEERQRQKEEER 417
Query: 386 LKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST 445
A +K+EE N + +P ++D + + P G D+ D F
Sbjct: 418 AAAEKLKQEEEAL-----NQMVLEPDILDDKIIDITFK-KNPFGSNRYDLTRDQFA--ME 469
Query: 446 SVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDE-GSASLILDA 504
+ PMFPF E + D++GE +D+++ + A + +D ++++ ++
Sbjct: 470 GMQPMFPFIEKVFKVDEYGE---------QDDELLEIARKLNQEDQEMEQLDEVDEKIEE 520
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P K+V LTV +KC + +I+YEG +DG+SIKTI+ +AP KL+LV G+ + L+ H
Sbjct: 521 TPKKIVKETLTVDLKCSVQYIEYEGCSDGKSIKTIIQKIAPSKLILVRGNQDCIAELETH 580
Query: 565 CLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 623
+++ +Y P I +TID+TS+ Y V L + L+S++ KL DY+IA++ A+V
Sbjct: 581 VKQNMRVKGLYKPIINQTIDLTSETNVYNVVLKDSLISSLASSKLMDYDIAYIQAKVILN 640
Query: 624 ENGM----LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTI 679
E M + L PH S +GD+K+++ K L G QV+F G + T+
Sbjct: 641 ETNMKAPPVLELLAEEEIEPHNSSFIGDIKLSEFKQLLIDSGYQVQFDQGIIAVSMKTTL 700
Query: 680 RKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ G S I I+G L ++YY++R LY QF ++
Sbjct: 701 IYIWREEVDGNSS----IQIDGILSDEYYQVRELLYQQFQII 738
>gi|357610700|gb|EHJ67102.1| putative cleavage and polyadenylation specificity factor 100 kDa
subunit [Danaus plexippus]
Length = 818
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/767 (33%), Positives = 409/767 (53%), Gaps = 88/767 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG +E+P Y++ +D F FL+DCGW++ FD ++ L + ++IDAVLL
Sbjct: 1 MTSIIKFHCLSGAGDESPPCYVLQVDEFKFLLDCGWDEKFDMDFIKELKRHVNSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SH D LHLGALPYA+ QLGL+ P+++T P+Y++G + MYD Y S ++V
Sbjct: 61 SHSDPLHLGALPYAVGQLGLNCPIYATLPIYKMGQMFMYDLYQSHKNVSEFDLFTLDDVD 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
T+L Y+Q+ + GKG G+ + P AGHLLGGTVW+I G ED++YA D+N +K
Sbjct: 121 TAFDRITQLKYNQSVDMKGKGLGLRITPLPAGHLLGGTVWRIAAPGEEDIVYAPDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG +E +RP++L+ A NA + Q R+ R E I TLR GG+VL+ D+A
Sbjct: 181 ERHLNGCEIEKIMRPSLLLLGAMNADYVQQRRRLRDEKLMTTILSTLRGGGSVLVCTDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L+ VS + +++ KS +EWM D +T++FE +R
Sbjct: 241 GRVLELAHMLDQLWRNKDSGLVAYSLLLLSNVSYNVVEFAKSQIEWMSDKLTRAFEGARS 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F L+H+ L + E+ P GPK+VLAS LE GF+ D+F++WA + +N ++ T R
Sbjct: 301 NPFALRHLQLCHSVVEVTRTP-GPKVVLASFPDLETGFARDLFLQWAPNSQNSIVLTART 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK---KEEALKASLVKEE 394
GTLAR L + +++T+ RRV L G EL + +++ ++ KEE S E
Sbjct: 360 SPGTLARDLIEKGGDRTIELTVRRRVRLEGAELEEFMQQRVKVNNSVKEETGGISSDSES 419
Query: 395 ESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 454
E + + P+ DA A H M+P
Sbjct: 420 EGELEMCVVTGKHDIPVRGDARPAGCFKSNKRHHA--------------------MYPCT 459
Query: 455 ENNSEWDDFGEVINPDDYIIKD--------EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
E + DD+GE+I P+DY + + D+ A H + P
Sbjct: 460 EERARADDYGEIIRPEDYRLAEVVDAEGEIRDVPPAPTHT---------QEPEEEITEIP 510
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
SK ++ +QVK + +I+ EGR DG S+ +++ P +V + A LK+HC
Sbjct: 511 SKCITATKQLQVKASIQYIELEGRCDGESLLRVVAAAKPRAVVALRAGPTALATLKKHCD 570
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG 626
V+TP +T+D T++ Y+V+L++ +M + ++ GD E+AW+ A V +
Sbjct: 571 SEGIEKVFTPGRGDTVDATTESHIYQVKLTDSVMCGLSWRSAGDAELAWLSAVVAQPRTR 630
Query: 627 -----------MLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 675
M+SL + PH + V +++++L+ L+ G+ EF+ GAL C
Sbjct: 631 DTPSEEVADVEMMSLE--AAEGVPHGAWFVNSVRLSELRAALARNGLGAEFSAGALECCN 688
Query: 676 -YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ IR++ + G ++ +EG L E+Y+K+R LY QF ++
Sbjct: 689 GTIAIRRL----ENG------RVALEGVLSEEYFKVRELLYDQFAIV 725
>gi|66826811|ref|XP_646760.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74858209|sp|Q55BS1.1|CPSF2_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|60474609|gb|EAL72546.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 784
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/807 (32%), Positives = 431/807 (53%), Gaps = 109/807 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ T LSG +E+P YL+ ID F L+DCG + + D SLL+PL KVA IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SH DT H+G LPY + + GL+ ++ T PV ++G + +YD Y ++ S
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNID 120
Query: 108 -------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
L++SQ+Y LSGKG+GI + P++AGH +G +VWKITK ++YA+DYN R
Sbjct: 121 SCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHR 180
Query: 161 KEKHLNGTVLES-FVRPAVLITDAYN-----ALHNQPPRQQREMFQDAISKTLRAGGNVL 214
E HL+ L S ++P++LITD+ A R Q +F+ I++ LR GGNVL
Sbjct: 181 NEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRDQ-SLFE-QINRNLRDGGNVL 238
Query: 215 LPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
+PVD+AGRVLELLL +E+YW+++ SL Y + FL S S + +S LE+M + + F
Sbjct: 239 IPVDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKF 298
Query: 273 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
E + +N F KH+ +L + EL PD K++L S LE GFS ++F++W SD K L+L
Sbjct: 299 EQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLIL 358
Query: 333 FTERGQFGTLA-RMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 387
FT++ +LA ++++ P K +++ RVPL G+EL+ YE EQ + ++E+ L+
Sbjct: 359 FTQKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDELLQYEMEQAKQREEKRLE 418
Query: 388 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP----- 442
+++E+ + +++A N + +++ + R I+ D V
Sbjct: 419 Q--LRKEQEEREERERLEEEEREQLLNATNQDQLQQLLQLQQQKERGIIDDSMVHMKNPF 476
Query: 443 ------------PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDED--MDQAAMHIGG 488
S+ MFP++E + +W ++GE DD I++++D +++ M
Sbjct: 477 ENDRFDLLDSEFKKQSMITMFPYFEKHLKWGEYGE--EDDDLILRNQDKKVEEVTME--- 531
Query: 489 DDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 548
+ P K+++ L + + C + IDYEG +DGRSIK I+ +AP KL
Sbjct: 532 --------EDEIQEQEIPKKIITQTLRLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKL 583
Query: 549 VLVHGSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
VL+ GS + ++ ++ + +++ +Y P I E +D+TSD Y++ L + L++ + K
Sbjct: 584 VLIRGSEQQSQSIENYVKENIRTKGIYIPSIGEQLDLTSDTNVYELLLKDSLVNTLKTSK 643
Query: 608 LGDYEIAWVDAEVGKTENGMLSLLPISTPAP----------------------------- 638
+ DYE++++ +V + + +L + P
Sbjct: 644 ILDYEVSYIQGKVDILDGSNVPVLDLIQSIPINNNNNNNNNNNNNNNNNNNNTTMMTTTT 703
Query: 639 ----PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 694
H +GD+K++DLK L + GIQV+F G L CG V I + G G
Sbjct: 704 TTTNGHDESFIGDIKLSDLKQVLVNAGIQVQFDQGILNCGGLVYIWRDEDHG------GN 757
Query: 695 QQIVIEGPLCEDYYKIRAYLYSQFYLL 721
I ++G + ++YY I+ LY QF ++
Sbjct: 758 SIINVDGIISDEYYLIKELLYKQFQIV 784
>gi|428169733|gb|EKX38664.1| hypothetical protein GUITHDRAFT_89302 [Guillardia theta CCMP2712]
Length = 770
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 270/799 (33%), Positives = 416/799 (52%), Gaps = 107/799 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ TPL G +E PL YL+ ID L+DCGW+++FD L+ L K+A T+DA+LL
Sbjct: 1 MSSLVKFTPLCGARSEEPLCYLLEIDEACILLDCGWDENFDVVSLRKLIKIAPTLDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
+H D HLGALPY ++ + A V++T PV ++G LTMYD SR +
Sbjct: 61 THCDLGHLGALPYIIRNCNVKAKVYATIPVQKMGQLTMYDMVESRMAKEDFKQFTLADID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
L Y Q+ LSGK EGI ++P AGH++GG +WKITK+ E+++YAVDYN ++
Sbjct: 121 MAWDNFVVLRYQQSCSLSGKAEGITISPLNAGHMIGGALWKITKESEEIVYAVDYNHAQD 180
Query: 163 KHLNGTVLESFVRPAVLITDAY-----NALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
+HL+GTVL RP +LITDAY N L + R+QR + + + +R GNVL+PV
Sbjct: 181 RHLDGTVLVDLPRPNILITDAYTALDKNTLGGKKAREQRLI--EHVMSAIRQDGNVLIPV 238
Query: 218 DSAGRVLELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
DS GRVLELL++L++ W + H + FL+ S S ID S EW+ + + F S
Sbjct: 239 DSTGRVLELLIVLDELWQQNPHLRGVTLAFLSPESRSIIDMAMSQTEWLSKHVNQRFIQS 298
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLE-AGFSHDIFVEWASDVKNLVLFT 334
R N F L++V ++ EL P P++VLAS LE + FS D+F EWA D KNLVL T
Sbjct: 299 RHNVFHLENVHRCCSREELGRLP-YPQVVLASGLDLETSSFSLDLFAEWAPDSKNLVLLT 357
Query: 335 ERGQFGTLARMLQ-----ADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK-- 387
++ + G+ AR Q P P + + M RRVPL G EL +EE Q RLK EA +
Sbjct: 358 QKARPGSRARQFQDLMGSGLPLPSNLMLQMHRRVPLEGRELREHEE-QERLKALEARRQL 416
Query: 388 -----------------ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG 430
A V E + +G + D + + + + GG
Sbjct: 417 EEEAEEAEEEEEEEEENAGAVGEAKEGEEVGKKASTPRAGKGADWSGSTPNKRHKKGRGG 476
Query: 431 RYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDED------MDQAAM 484
R + MFP +E +D++GEV++ Y+ +D+ +++
Sbjct: 477 ESRFL--------------MFPHHEEIYSFDEYGEVMDTSIYLKEDQQEEVQGFVEETIS 522
Query: 485 HIGGDDGKLDEGSASL-ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 543
+ G +L + L A P+K ++ + Q+ C + F+DY GR+D S+ TIL H+
Sbjct: 523 YSGSATSELRPVAHQLHAAAAIPTKSLTYTIRTQLNCGMAFLDYGGRSDSSSVHTILEHL 582
Query: 544 APLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMS 601
P K++++HGS +ATE L+ C++ V + + P + E + +SD YK++L + L
Sbjct: 583 KPAKVIVIHGSEKATEELQNFCIRKVTEPENTFAPPVGEAVMASSDTNIYKIKLDKALAQ 642
Query: 602 NVLFKKLGDYEIAWVDAEVGKTENGML---SLLPIS--------TPAPPHKS-------- 642
+ F ++G Y++A++DA + + + S LP+ T P +
Sbjct: 643 GLQFVRVGGYDVAYIDASITCPDENSVDNSSTLPVGQNKDKQMPTLVPRQQEDGGGRKPF 702
Query: 643 VLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGP 702
+GD+K++DLK L + + E G L + IRK G +++ EG
Sbjct: 703 AFIGDVKLSDLKVLLEKQKYKTELKAGMLVVNGSIIIRKSG-----------SRMIFEGT 751
Query: 703 LCEDYYKIRAYLYSQFYLL 721
+C +Y +R+ L SQ++ L
Sbjct: 752 ICTEYAAVRSLLMSQYHTL 770
>gi|402591052|gb|EJW84982.1| cleavage and polyadenylation specificity factor subunit 2
[Wuchereria bancrofti]
Length = 809
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 269/832 (32%), Positives = 426/832 (51%), Gaps = 134/832 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + S
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E+G S D + + + + T
Sbjct: 300 NPFQFRHVQLCHTHIDLMRV-RSPKVVLVSGLDMESGRSGDRTL--GARLIRMAEQTAEN 356
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY-------EEEQTRLKKEEALKASL 390
GT+ R L + + RR+ L G EL Y E E TR++ E + + +
Sbjct: 357 PNGTINRNL---------TLEVKRRIRLEGVELENYRAKKRAEEREATRIRLEASRRNAR 407
Query: 391 VKE---------------------------EESKASLGPDNNLSGDPMVIDANNANASAD 423
+++ SK ++ + S D + A +
Sbjct: 408 LEQADSSDDSDDDAVMVVPATTSGILNGKMTNSKRNIASSFSASTTISTTDLSAAQIAEQ 467
Query: 424 VVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM--DQ 481
++ F S PMFP+ E + WDD+GE+I P++Y+I D +
Sbjct: 468 RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEEYMIADTPVVPQI 527
Query: 482 AAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 540
H G D D L + + PSK +S + ++V C + FID+EGR+DG S K IL
Sbjct: 528 PPEHKDGTDSTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFEGRSDGESAKKIL 587
Query: 541 SHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEK 598
S + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D T + Y+V LS+
Sbjct: 588 SQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDATIESHIYQVTLSDA 647
Query: 599 LMSNVLFKKLGDYEIAWVDAEV--------GKTENG------------------------ 626
+MS+++F+ + D E++W+DA + G+ +N
Sbjct: 648 VMSSLIFQTVKDAELSWLDARIVRRKTVTPGQAQNAGEENLETNGNKEEEVEEMEQDGSD 707
Query: 627 ----------------MLSLLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGG 669
L P +S PPH++V V D K++D+K L+S G + EF+ G
Sbjct: 708 QVEGKRLSNLKVAVADTFCLEPMLSANIPPHQAVFVNDPKLSDMKQLLASNGFRAEFSSG 767
Query: 670 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
L +IR+ AG + +EG CEDYYKIR +Y+QF ++
Sbjct: 768 VLYINNIASIRR-NEAG---------RFHVEGYACEDYYKIRDIVYAQFAVV 809
>gi|255070137|ref|XP_002507150.1| predicted protein [Micromonas sp. RCC299]
gi|255070139|ref|XP_002507151.1| predicted protein [Micromonas sp. RCC299]
gi|226522425|gb|ACO68408.1| predicted protein [Micromonas sp. RCC299]
gi|226522426|gb|ACO68409.1| predicted protein [Micromonas sp. RCC299]
Length = 808
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 280/821 (34%), Positives = 438/821 (53%), Gaps = 129/821 (15%)
Query: 2 GTSVQVTPLSGV--FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
GT ++ +PL GV E+P Y++ +DGF L+DCGWND FD +LL+PL+KVA+ +DAVL
Sbjct: 5 GTRIKFSPLYGVQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVL 64
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------ 107
+SHPDT HLGALPYA +LG+ V++T PV+++GL+ MYD +LSR +
Sbjct: 65 ISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDI 124
Query: 108 ------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ Y+Q L G G GI + P+ AGH+LGG +WK+ K+ +DV+YAV++N R+
Sbjct: 125 DTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDDVVYAVNFNHRR 184
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
EKHLNGTVLES RPAVLITDA NA P + + +AI +T+R GNVL+P+D AG
Sbjct: 185 EKHLNGTVLESIKRPAVLITDASNARRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAG 244
Query: 222 RVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
RVLELLL+LE+ W++ L Y + LT V+ +T+++ +S LEWMG+ + + F+ R NAF
Sbjct: 245 RVLELLLVLEERWSQKQLAAYQLVLLTKVAYNTLEFARSHLEWMGEHVGQYFDRERHNAF 304
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H+ L + E P GPK+VLAS SL+AG S IFVEWA D +NL++FT+R Q G
Sbjct: 305 NTRHLKLCHSIDEFRALPQGPKVVLASFGSLDAGASRHIFVEWAPDPRNLIVFTDRLQPG 364
Query: 341 TLARMLQ--ADPPPKA---VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
+L+R + + PP A +++++S+R+ LVG+EL+ ++ KE + +LV +
Sbjct: 365 SLSREVCRLSQLPPGARLPLRISLSQRLKLVGDELLEWQ------GKEISRSQALVPIKS 418
Query: 396 SKASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAP 449
S L VI++ N H GGR ++DG + +
Sbjct: 419 STKY----RVLREPKPVIESCKPNLDTQCTTMHSQASHRGGRC--YVLDGINQVNNANVA 472
Query: 450 MFPFYENNSEWD----DFGEVINPDDY-------IIKD----EDMDQAAMHIG--GDDGK 492
+F ++ W DFGE I + + + D + +++ G D G+
Sbjct: 473 IF----DDESWYPNVLDFGETITSETFEGYVQIGLQNDHRSGDRIEERPGEFGHTSDPGR 528
Query: 493 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 552
+ + + L+ P+K+++ V ++ + D+EG +DG SI+TIL+H+ P +++LV
Sbjct: 529 VYPDTQFMGLEDSPTKILTETHDVYLRAAVHICDFEGNSDGHSIQTILTHLEPRRVILVR 588
Query: 553 GSAEATEHLKQHCLKHVC-PHVYTPQIEETIDVTSDLCAYKVQLSEKLMS---------- 601
G+ T+ L+ K + ++ P+ + ++ S+ ++++LS+ L+S
Sbjct: 589 GNPSDTDFLRMQLQKSLLRAEIHAPKQSQMVECISENTTFRLELSQDLLSHTHMRDVAGY 648
Query: 602 -------NVLFKKLG---------------------------------DYEIAWVDAEVG 621
NVL + G E DA VG
Sbjct: 649 QVGWVEGNVLISRGGGDPAATLVPAKSGMICEAQRTGLQPNTGASQTATRETRTQDARVG 708
Query: 622 KT------ENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-G 674
E S L + + LVG LK++D + L++ G EF GGAL C G
Sbjct: 709 LDFSREIDEQSTASELFLDELVVKKPAALVGSLKLSDSRLALAAAGCATEFRGGALMCTG 768
Query: 675 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
+ V +RK G + +++EG LC+ ++ +R+ LY
Sbjct: 769 DKVRVRKTVNV------MGAENLLLEGNLCDTFFSVRSTLY 803
>gi|427789025|gb|JAA59964.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Rhipicephalus pulchellus]
Length = 646
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/674 (36%), Positives = 374/674 (55%), Gaps = 73/674 (10%)
Query: 93 LGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD + SR + + +L YSQ +L GKG+G+ + P AG
Sbjct: 1 MGQMFMYDLFQSRHNMEDFTLFTLDDVDAAFDKIIQLKYSQTVNLKGKGQGLSITPLPAG 60
Query: 135 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGTVW+I KDGE D++YAVD+N +KE+HLNG LE+ RP++LITD YNA + Q R
Sbjct: 61 HMIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 249
+ R E I +TLR GNVL+ VD+AGRVLEL +LE W + Y + L V
Sbjct: 121 RTRDEQLMTNILQTLRNSGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMAYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + +++ KS +EWM D + +SFE +R+N F +H+ L +EL P+ PK+VLASMA
Sbjct: 181 SYNVVEFAKSQVEWMSDKVMRSFEGARNNPFQFRHLQLCHGMAELARVPE-PKVVLASMA 239
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
+E GFS ++F++W S +N V+ T R GTLAR L +P +++ +T+ +RV L G E
Sbjct: 240 DMECGFSRELFIQWCSSPRNSVVLTSRSAPGTLARQLIENPHQQSLTITVKKRVRLEGSE 299
Query: 370 LIAYEEEQTRLKKEEALKASLVK-EEESKASLGPDNNLSGDPMVIDANNANASADVVEPH 428
L Y ++KE+ L A+ K E +++ + S D M ID EP
Sbjct: 300 LEEY------MRKEKELAAARHKAERDTELDASDSSEESEDDMDIDEKKPQP-----EPK 348
Query: 429 GGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGG 488
G + GF + MFP E +WDD+GE+I P+D+++ +D+AA
Sbjct: 349 GEAKSKSM--GFFKQAKKSYLMFPVKEEKIKWDDYGEIIRPEDFVV----VDKAAQEEET 402
Query: 489 DDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 548
D+ K ++ + P+K + + L + V L FID+EGR+DG S++ I+ + P ++
Sbjct: 403 DETKAEDDDLMQDVTEVPTKCLESSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRV 462
Query: 549 VLVHGSAEATEHLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 606
+LV GS EAT+ + C V V+TP+I E +D T++ Y+V+L + L+S++ F
Sbjct: 463 ILVRGSPEATQAMAAFCRSSGSVQGRVFTPRIGEVVDATTESHIYQVKLRDSLVSSLQFA 522
Query: 607 KLGDYEIAWVDAEVGKTEN------------------GMLSLLPI-STPAPPHKSVLVGD 647
+ + E+AW+D E+ E+ M L P+ + P H ++ V +
Sbjct: 523 RAKNAELAWLDGEIATEEHLAPDGTRDETIDEDESRESMYILQPLPPSQVPGHATIFVNE 582
Query: 648 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 707
LK++D K L G+Q EF+GG L C V +R+ AG +I IEG LCEDY
Sbjct: 583 LKLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRR-NEAG---------RINIEGCLCEDY 632
Query: 708 YKIRAYLYSQFYLL 721
+K+R LY Q+ ++
Sbjct: 633 FKVREILYQQYAII 646
>gi|449518417|ref|XP_004166238.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Cucumis sativus]
Length = 237
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/236 (86%), Positives = 217/236 (91%), Gaps = 1/236 (0%)
Query: 487 GGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 545
GGD DGKLDE +A+LILD KPSKVVSNELTVQVKC L ++D+EGR+DGRSIK+ILSHVAP
Sbjct: 2 GGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAP 61
Query: 546 LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 605
LKLVLVHG+AEATEHLKQHCLK+VCPHVY PQIEETIDVTSDLCAYKVQLSEKLMSNVLF
Sbjct: 62 LKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 121
Query: 606 KKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVE 665
KKLGDYEI W+DAEVGKTENG LSLLP+S PHKSVLVGDLKMAD K FL+SKGIQVE
Sbjct: 122 KKLGDYEITWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVE 181
Query: 666 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
FAGGALRCGEYVT+RKV A QKGGGSGTQQ+VIEGPLCEDYYKIR LYSQFYLL
Sbjct: 182 FAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 237
>gi|414881945|tpg|DAA59076.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 309
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 247/303 (81%), Gaps = 19/303 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 282 LKH 284
LK+
Sbjct: 301 LKY 303
>gi|346465041|gb|AEO32365.1| hypothetical protein [Amblyomma maculatum]
Length = 644
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/670 (35%), Positives = 369/670 (55%), Gaps = 71/670 (10%)
Query: 93 LGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD + SR + + +L YSQ +L GKG+G+ + P AG
Sbjct: 1 MGQMFMYDLFQSRHNMEDFTLFTLDDVDAAFDKIIQLKYSQTVNLKGKGQGLSITPLPAG 60
Query: 135 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGTVW+I KDGE D++YAVD+N +KE+HLNG LE+ RP++LITD YNA + Q R
Sbjct: 61 HMIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 249
+ R E I +TLR GGNVL+ VD+AGRVLEL +LE W + Y + L V
Sbjct: 121 RTRDEQLMTNILQTLRNGGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMAYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + +++ KS +EWM D + +SFE +R+N F +H+ L +EL P+ PK+VLASMA
Sbjct: 181 SYNVVEFAKSQVEWMSDKVMRSFEGARNNPFQFRHLQLCHGLAELARVPE-PKVVLASMA 239
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
+E GFS D+F++W S +N V+ T R GTLAR L +P +A+ +TM +RV L G E
Sbjct: 240 DMECGFSRDLFIQWCSSPRNSVVLTSRTAPGTLARQLIENPHQQALTITMKKRVRLEGSE 299
Query: 370 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 429
L Y ++KE+ L A+ K E L ++ +D + + EP G
Sbjct: 300 LEEY------MRKEKELAAARHKAERD-TELDASDSSEESEDDMDVDEKKP---LPEPKG 349
Query: 430 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD 489
+ GF + MF E +WDD+GEVI P+D+++ +D+ D
Sbjct: 350 ESKAKSM--GFFKQAKKSYLMFQVKEEKIKWDDYGEVIRPEDFVV----VDKTTQEEEAD 403
Query: 490 DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 549
+ K ++ + + P+K + + L + V L FID+EGR+DG S++ I+ + P +++
Sbjct: 404 EAKAEDDDLTQDVTEVPTKCLESSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRVI 463
Query: 550 LVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
LV GS EAT+ + C V V+TP++ E +D T++ Y+V+L + L+S++ F +
Sbjct: 464 LVRGSPEATQAMAAFCRSSGAVQGRVFTPRMGELVDATTESHIYQVKLRDSLVSSLQFAR 523
Query: 608 LGDYEIAWVDAEVGKTE------------------NGMLSLLPI-STPAPPHKSVLVGDL 648
+ E+AW+D E+ E + M L P+ + P H ++ + ++
Sbjct: 524 AKNAELAWLDGEIATEEHLAPDGAQDDSLDMDEPRDSMYILQPLPPSQVPGHATIFINEI 583
Query: 649 KMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 708
K++D K L G+Q EF+GG L C V +R+ AG +I IEG LCEDY+
Sbjct: 584 KLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRR-NEAG---------RINIEGCLCEDYF 633
Query: 709 KIRAYLYSQF 718
K+R LY Q+
Sbjct: 634 KVREILYQQY 643
>gi|307203591|gb|EFN82620.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Harpegnathos saltator]
Length = 685
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/770 (33%), Positives = 403/770 (52%), Gaps = 134/770 (17%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR +
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLEL +L+ W ++++
Sbjct: 241 GRVLELAHMLDQLW---------------------------------------RNKESGL 261
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
L + LL N +VLAS +E GFS ++F++W ++ +N ++ T R G
Sbjct: 262 LAYSLALLNN------------VVLASTPDMECGFSRELFLQWCTNPQNSIILTSRTSPG 309
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 310 TLARDLVEKGGNRNITLEVKRRVKLEGIELEEYQ-------KREKLKQEQLKQEQMEI-- 360
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMFPFY 454
A+ ++ S D +E G R + D+L+ GF S PMFPF
Sbjct: 361 --------------ADVSSESEDEIEVGGARGKHDLLVKQESKPGFFKQSKKQHPMFPFV 406
Query: 455 ENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNE 513
E + D++GE+I P+DY I E + + + + K +E + + A P+K +
Sbjct: 407 EEKIKIDEYGEIIKPEDYKIA-ETLPEVEDNKENVEMKQEEINHHPEIAADIPTKCIQVS 465
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 573
+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS++ TE L Q + V
Sbjct: 466 RAMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSSKDTEILAQQA-QSAGARV 524
Query: 574 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA-----------EVG 621
+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 525 FIPARGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQICRDAIA 584
Query: 622 KTE---------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGAL 671
TE + +L+L P+ P H++ + +LK++D K L+ I EF+GG L
Sbjct: 585 DTEPEDAIMDESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNISSEFSGGVL 644
Query: 672 RCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 645 WCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 685
>gi|452822529|gb|EME29547.1| cleavage and polyadenylation specificity factor subunit 2
[Galdieria sulphuraria]
Length = 747
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/758 (33%), Positives = 409/758 (53%), Gaps = 103/758 (13%)
Query: 1 MGTSVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPL GV E+ + YL+ ID F L+DCGWND F+ +LL+PL ++A +DAVL
Sbjct: 1 MSSILRFTPLYGVKTEDLAVCYLLEIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR-------------- 105
+SHPD HLGALPYA+ +LGL AP ++T PV+R+G L MYD + SR
Sbjct: 61 ISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSRAMQEDFQVFDLDDV 120
Query: 106 ----RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ +L Y Q + S +G+GI + PH AGH++GGTVWKI + E+++YA D+N ++
Sbjct: 121 DSAFENFIQLKYQQIVNFSERGKGITITPHPAGHMIGGTVWKIQSETEEIVYANDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNAL----------HNQPPRQQR---------EMFQDA 202
E+HLN T L+ RP+ LI A AL Q P+ + E+ ++A
Sbjct: 181 ERHLNPTTLQYLTRPSHLIISASQALVRPSSSSSISGQQFPKGSQIYSRSNPLTEICEEA 240
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSF 260
+S TLR GG+V++PVD+AGRVLEL L ED+WA L +Y + + +VS +TID+ KS
Sbjct: 241 LS-TLRQGGDVVIPVDTAGRVLELALGFEDFWATEKLGSSYAVAIIEHVSFNTIDFAKSM 299
Query: 261 LEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
+EWM D++ F+T+R+N F LKH+ L + ++ PK++L S+ASLE GFS ++
Sbjct: 300 MEWMSDAVINKFDTTRENPFHLKHIH-LCHSRSELSSLLSPKVILTSVASLECGFSRELV 358
Query: 321 VEWASDVKNLVLFTERGQFGTLA----RMLQADPPPKAVK-----VTMSRRVPLVGEELI 371
VE S+ KN ++ +R + TLA +L+ + K V+ + ++RRVPL G EL
Sbjct: 359 VEMVSNKKNKLILVDRLEPNTLAHSIYNVLEDESEGKTVQLPRIALRLNRRVPLQGAEL- 417
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN-----ANASADVVE 426
EE K SL+ ++ + + +N LS ++ D
Sbjct: 418 ---EEYYANMKTSNESVSLL---QNPSEMHFENRLSSSTEEEQEEEDLSSMSDDEKDKAT 471
Query: 427 PHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE----WDDFGEVINPDDYIIKDEDMDQA 482
H G + G + + M F + WDD+G VI+ ++I ++ +
Sbjct: 472 NHFGSF-----SGESKIDKARSEMIVFSNARKQTDDIWDDYGLVIDTKCFMIGEDPGE-- 524
Query: 483 AMHIGGDDGKLDEGSASLIL-------------DAKPSKVVSNELTVQVKCLLIFIDYEG 529
I GD + E S L + P+K + + ++V C + ++ G
Sbjct: 525 ---IEGDSEEFSETSMDDALNNPVDFRGLFQEDEQVPTKCIQVNVNLEVACQIRYVGCAG 581
Query: 530 RADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLC 589
+DGRS++ +L+ VAP ++++VHGS + T +K+ C + + ++ P+ ETID+T+D
Sbjct: 582 LSDGRSLRQLLTAVAPRRVIIVHGSRKETAAIKEFCERGLTKDIFCPRAMETIDITTDTS 641
Query: 590 AYKVQLSEKLMSNVLFKKLGDYEIAWVDA-------------EVGKTENGMLSLLPISTP 636
+++ L ++L+S+ ++K++GDYE++++D E + L S+
Sbjct: 642 IFRLTLRDRLLSSCIWKRIGDYELSFLDGTIRVENESSPKEKETNVSHTQEYVLEQRSSL 701
Query: 637 APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 674
H V +G+ K++DL+P LS GI +F G ++ G
Sbjct: 702 DSGHPIVFIGEGKLSDLRPALSRVGIPSDFIGDSVSNG 739
>gi|297695726|ref|XP_002825082.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2 [Pongo abelii]
Length = 747
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 248/748 (33%), Positives = 394/748 (52%), Gaps = 131/748 (17%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYS 114
IDAVLLSHPD LHLGA PYA+ +LGL +++ PVY++G + MYD Y R
Sbjct: 50 IDAVLLSHPDPLHLGAXPYAVGKLGLKCAIYAPIPVYKMGQMXMYDLYQFR--------- 100
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED-VIYAVDYNRRKEK-HLNGTVLES 172
GKG G+ + P AGH++GGT+WKI KDGE+ ++YAVD+N ++E +L+G S
Sbjct: 101 ------GKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREMLNLSGKPFSS 154
Query: 173 --FVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+ P++LITD++NA + QP R+QR E + +TLR GNVL+ VD+AGRVLEL +
Sbjct: 155 TMYYSPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQL 214
Query: 230 LEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
L+ W +Y L VS + +++ KS +EWM D + + FE R+N F +H++
Sbjct: 215 LDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLS 274
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L
Sbjct: 275 LCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFL 333
Query: 347 QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNL 406
+P K ++ + +RV L G+EL Y E++ K+
Sbjct: 334 IDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ----------------- 376
Query: 407 SGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNS 458
S + + ++ ++ D+ +P + + D+++ G F + PMFP E
Sbjct: 377 SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERI 436
Query: 459 EWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 513
+WD++GE+I P+D+++ +E+ + + D +D+ + + P+K +S
Sbjct: 437 KWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTT 491
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHV 569
++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K +
Sbjct: 492 ESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI 551
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTEN 625
VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 552 --KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDT 609
Query: 626 GML-----------------------------------------------SLLPISTPAP 638
G++ ++P P P
Sbjct: 610 GVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLP 669
Query: 639 P-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSG 693
P H+SV + + +++D K L +GIQ EF GG L C V +R+ +
Sbjct: 670 PHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TE 719
Query: 694 TQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 720 TGRIGLEGCLCQDFYRIRDLLYEQYAIV 747
>gi|195574631|ref|XP_002105288.1| GD21403 [Drosophila simulans]
gi|194201215|gb|EDX14791.1| GD21403 [Drosophila simulans]
Length = 664
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 374/694 (53%), Gaps = 95/694 (13%)
Query: 93 LGLLTMYDQYLSR------------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD Y+S +T+L Y+Q L GKG GI + P AG
Sbjct: 1 MGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKGKGYGISITPLNAG 60
Query: 135 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGT+WKI K GE D++YA D+N +KE+HL+G L+ RP++LITDAYNA + Q R
Sbjct: 61 HMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 249
+ R E I +T+R GNVL+ VD+AGRVLEL +L+ W + Y + L V
Sbjct: 121 RARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKDSGLMAYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + I++ KS +EWM D +TK+FE +R+N F KH+ L + +++ N P GPK+VLAS
Sbjct: 181 SYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYNLPAGPKVVLASTP 240
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGE 368
LE+GF+ D+FV+WAS+ N ++ T R GTLA +++ P K +++ + RRV L G
Sbjct: 241 DLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 300
Query: 369 ELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV---IDANNANASADVV 425
EL Y Q E L +VK PD I+ + D+V
Sbjct: 301 ELEEYLRTQG-----EKLNPLIVK---------PDVEEESSSESEDDIEMSVITGKHDIV 346
Query: 426 EPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--------- 476
GR+ GF + MFP++E + D++GE+IN DDY I D
Sbjct: 347 VRPEGRHHS----GFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPM 402
Query: 477 -----EDMDQAAMHIGGD---DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 528
E++ + +G D +G + + L+ KP+K+++ T++V + ID+E
Sbjct: 403 EEQNKENVKKEEPGMGADQQANGAIVDNDVQLL--EKPTKLINQRKTIEVNAQVQRIDFE 460
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 588
GR+DG S+ ILS + P +++++HG+AE T+ + +HC ++V V+TPQ E IDVT+++
Sbjct: 461 GRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGEIIDVTTEI 520
Query: 589 CAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------------TENGMLS 629
Y+V+L+E L+S + F+K D E+AWVD +G E L+
Sbjct: 521 HIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKAIEAPMDVTVEQDASVQEGKTLT 580
Query: 630 LLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQ 687
L ++ P H SVL+ +LK++D K L I EF+GG L C + +R+V
Sbjct: 581 LETLADDEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRVDAG-- 638
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
++ +EG L E+YYKIR LY Q+ ++
Sbjct: 639 --------KVAMEGCLSEEYYKIRELLYEQYAIV 664
>gi|330803886|ref|XP_003289932.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
gi|325079974|gb|EGC33550.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
Length = 752
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 81/777 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MG+ V+ T LSG NE P YL+ ID F L+DCG + D SLL+PL K A IDAVLL
Sbjct: 1 MGSIVKFTALSGGDNEKPPCYLLEIDDFCILLDCGLSYDLDFSLLEPLKKYADKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D LH+G LPYA+ +LGL+ ++ T PV ++G + +YD Y ++ +
Sbjct: 61 SNSDLLHIGGLPYAVGKLGLTGTIYGTTPVLKMGTMFLYDLYENKMAQEEFDQFNLDNVD 120
Query: 108 -------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
L++SQ+Y L GKG+GI + P++AGH++G +VW+ITK +IYA+D+N R
Sbjct: 121 ACFGEDRFKELSFSQHYLLQGKGKGISITPYLAGHMVGSSVWRITKGTYSIIYALDFNHR 180
Query: 161 KEKHLNGTVLES-FVRPAVLITDAYNALHNQPPRQ---QREMFQDAISKTLRAGGNVLLP 216
E HL+ L S ++P++LITD+ P ++ + + + I +LRAGGNVLLP
Sbjct: 181 NEGHLDSLQLTSDILKPSLLITDSKGVDRTLPYKKIATRDQALLEKIHNSLRAGGNVLLP 240
Query: 217 VDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
VD+AGRVLELLL +E+YW ++ L+ Y + FL S + + KS LE+M S + FE
Sbjct: 241 VDTAGRVLELLLCIENYWVKNRLSLYTVGFLGRFSFNVCQFAKSQLEFMSSSASVRFEQK 300
Query: 276 RDNAFLLKHVTLLINKSELDNAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
DN F + + + S L+ P + PK++L S LE G+S D+F++W+SD KNL+LF
Sbjct: 301 IDNPFTFRQIKIF---STLEEIPETNTPKVILTSSQDLETGYSRDLFIKWSSDPKNLILF 357
Query: 334 TERGQFGTLARML------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 387
T G+LA + ++ K +++ RVPL GEEL+ YE+ + K+E+ L+
Sbjct: 358 TNYIPEGSLASKVINIASNKSSGSNKTIEIQQGSRVPLQGEELLEYEQRIAKEKEEKLLE 417
Query: 388 ASLVKEEESKASLGPDNNLSGDPMVIDANN-----ANASADVVEPHGGRYRDILIDGFVP 442
++EE + + G M +D NN N + P+G D L F
Sbjct: 418 QLKKEQEEQEERERLEMEEKG--MNLDDNNDEIMITNGVNEPSLPNGTIINDSL-SNFKN 474
Query: 443 P-------------STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD 489
P + MFP+YE + +W D+GE +++I K+++ +
Sbjct: 475 PFENKYDLSRGQFRREGMVAMFPYYEKHVKWGDYGE--EDEEFIEKNQNQKVEEVA---- 528
Query: 490 DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 549
P K+V +V C + IDYEG +DGRSIKTI+ +AP LV
Sbjct: 529 -----MEEDEENEQEVPKKIVVTTHQCEVNCKVDTIDYEGISDGRSIKTIIQQIAPTNLV 583
Query: 550 LVHGSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 608
L+ G + +++++ + +++ +++P I E +D+TS Y++ L + L++ + K+
Sbjct: 584 LIRGKKDQSKNIENYVKENMRTKGIFSPAINEELDLTSGTNVYELVLRDTLVNTLKPSKI 643
Query: 609 GDYEIAWVDAEVG---KTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGI-QV 664
D E++++ +V + + L ++P S H +GD+K+ADLK L GI +V
Sbjct: 644 LDCEVSFIQGKVEYNPENNSSYLDIIP-SEQNNGHDESFIGDIKLADLKQVLVKAGIKKV 702
Query: 665 EFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+F G + C + V I + + GG+ I ++G + ++YY ++ LY QF ++
Sbjct: 703 QFDQGIINCNDLVYIWR-----EDVGGNSI--INVDGIISDEYYLVKELLYRQFQIV 752
>gi|355680846|gb|AER96660.1| cleavage and polyadenylation specific factor 2, 100kDa [Mustela
putorius furo]
Length = 569
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/592 (37%), Positives = 342/592 (57%), Gaps = 59/592 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG E
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPE 569
>gi|24650920|ref|NP_733264.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
gi|23172526|gb|AAN14148.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
Length = 664
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 372/694 (53%), Gaps = 95/694 (13%)
Query: 93 LGLLTMYDQYLSR------------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD Y+S +T+L Y+Q L KG GI + P AG
Sbjct: 1 MGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAG 60
Query: 135 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGT+WKI K GE D++YA D+N +KE+HL+G L+ RP++LITDAYNA + Q R
Sbjct: 61 HMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 249
+ R E I +T+R GNVL+ VD+AGRVLEL +L+ W + Y + L V
Sbjct: 121 RARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + I++ KS +EWM D +TK+FE +R+N F KH+ L + +++ P GPK+VLAS
Sbjct: 181 SYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTP 240
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGE 368
LE+GF+ D+FV+WAS+ N ++ T R GTLA +++ P K +++ + RRV L G
Sbjct: 241 DLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 300
Query: 369 ELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV---IDANNANASADVV 425
EL Y Q E L +VK PD I+ + D+V
Sbjct: 301 ELEEYLRTQG-----EKLNPLIVK---------PDVEEESSSESEDDIEMSVITGKHDIV 346
Query: 426 EPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--------- 476
GR+ GF + MFP++E + D++GE+IN DDY I D
Sbjct: 347 VRPEGRHHS----GFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPM 402
Query: 477 -----EDMDQAAMHIGGD---DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 528
E++ + IG + +G + + L+ KP+K++S T++V + ID+E
Sbjct: 403 EEQNKENVKKEEPGIGAEQQANGGIVDNDVQLL--EKPTKLISQRKTIEVNAQVQRIDFE 460
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 588
GR+DG S+ ILS + P +++++HG+AE T+ + +HC ++V V+TPQ E IDVTS++
Sbjct: 461 GRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGEIIDVTSEI 520
Query: 589 CAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------------TENGMLS 629
Y+V+L+E L+S + F+K D E+AWVD +G E L+
Sbjct: 521 HIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKAIEAPMDVTVEQDASVQEGKTLT 580
Query: 630 LLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQ 687
L ++ P H SVL+ +LK++D K L I EF+GG L C + +R+V
Sbjct: 581 LETLADDEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRVDAG-- 638
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
++ +EG L E+YYKIR LY Q+ ++
Sbjct: 639 --------KVAMEGCLSEEYYKIRELLYEQYAIV 664
>gi|167535876|ref|XP_001749611.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772003|gb|EDQ85662.1| predicted protein [Monosiga brevicollis MX1]
Length = 770
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 252/785 (32%), Positives = 404/785 (51%), Gaps = 85/785 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M V+V LSGV +E+P YL+ +DG L+DCGW++HFD + L L+KVASTID VLL
Sbjct: 1 MAFIVRVEALSGVLDESPPCYLLELDGVRILLDCGWSEHFDTTQLDALAKVASTIDLVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
S PD HLGALPYA ++LGL+ P ++T P+ +LGLL +YD + +R
Sbjct: 61 SQPDIHHLGALPYAYEKLGLTCPCYATLPIKQLGLLFLYDAFQARMEQEDFETFSLDGID 120
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
++T + YSQ ++G GI + AGH+LGGTVW+ITKD EDV+YA++YN R E
Sbjct: 121 ESFANITSVKYSQAIEVAGT--GITLLALQAGHMLGGTVWRITKDDEDVVYALNYNHRSE 178
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQ--PPRQQREMFQDAISKTLRAGGNVLLPVDSA 220
+HL V + RP++LIT A NA P+++ +T+R+ G +++ D+A
Sbjct: 179 RHLRPAVFQLLTRPSLLITGARNASTEMVLKPKEREAKLLSLAEQTMRSDGTMVVVADTA 238
Query: 221 GRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
GR LEL+ + E +W ++ YP++FL++ S + +++ ++ +E+M D + +T N
Sbjct: 239 GRTLELVQLFESHWNDNPGLKTYPVFFLSHNSYNVLEFAQTLIEFMSDKMLVKLQTMTHN 298
Query: 279 AFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
F ++ + +D G K+V+ +SLEAGF ++ A + +N LF R
Sbjct: 299 PFACPNIKC---QKTVDGVMRSAGAKVVIVPHSSLEAGFGRELLFRLAGEARNRFLFIAR 355
Query: 337 GQFGTL-ARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE---EQTRLKKEEALKASLVK 392
+L AR+L ++ RV L GEEL AY + E+ + +KE+AL + +
Sbjct: 356 PPPHSLGARLLAKSGQIHTIQFEHRFRVQLEGEELKAYRQHKAEEAKQQKEDALAQARAE 415
Query: 393 ----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVA 448
+S+ D++++ PM + + A P R +D T+
Sbjct: 416 GTFVGSDSEDDEDEDDHVADLPMRLPGTQPSIDAVHHTPQQTRAKDRTFRSRRQALTT-- 473
Query: 449 PMFPFYEN---------------NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD---- 489
FPF N EWDD+G + + + D + D
Sbjct: 474 --FPFQSNKVVRASTYDSFMGAQKVEWDDYGMTFDREKLKLLDSHLATGLEAPAADEADK 531
Query: 490 ---DGKLD----EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 542
D L+ E +AS+ +PSKVV+ + + V+C + ++D EG +D S+ IL
Sbjct: 532 PAEDSNLEAMQAELTASIQEAERPSKVVAQQRDLSVRCQVEYLDLEGLSDRESMLNILER 591
Query: 543 VAPLKLVLVHGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 600
+ P LVL+HG+ + TE L C+ + + P+ E +D+ + ++++L + L+
Sbjct: 592 MRPRFLVLLHGTEDETEELADSCVHKLRDLERIVMPKRFERVDIAGERNIFQLRLRDALV 651
Query: 601 SNVLFKKLGDYEIAWVDAEVGKTE-------NGMLSLLPISTPAPPHKSVLVGDLKMADL 653
S++ F + G+Y+IAW+D + TE L L +T A H +V VGD++++ L
Sbjct: 652 SSLKFSEAGEYKIAWIDGVLAHTEGDETSSKRAKLPQLEAATEAAEHNAVFVGDIRLSQL 711
Query: 654 KPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 713
K L + ++V + L C V + K GGS + I+GPLCE YYK+R
Sbjct: 712 KTVLENHQVEVSWWVEKLVCNNQVVVGK-----DPLGGSFS----IDGPLCETYYKVREL 762
Query: 714 LYSQF 718
LY QF
Sbjct: 763 LYQQF 767
>gi|384484008|gb|EIE76188.1| hypothetical protein RO3G_00892 [Rhizopus delemar RA 99-880]
Length = 657
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/635 (37%), Positives = 354/635 (55%), Gaps = 75/635 (11%)
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS-- 107
KV+ IDAVLLSH D HLGA PYA LG++ PV+ST PV +G + MYD Y SR +
Sbjct: 2 KVSKQIDAVLLSHSDLGHLGAYPYARNHLGMTCPVYSTVPVVNMGKMCMYDLYQSRTNEL 61
Query: 108 ----------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
+T L YSQ + L GK +GI + + A H +GGT+WKI +D +++
Sbjct: 62 EFKTFTLEDVDNAFDKITPLRYSQPFSLPGKCQGITITAYAAAHTVGGTIWKIKQDTDEI 121
Query: 152 IYAVDYNRRKEKHLNGTVL-------ESFVRPAVLITDAYNALHNQPPRQQR--EMFQDA 202
+YAVD+N RKE HL+GTVL +S RP++LITDAYN+ P R+ R MF D
Sbjct: 122 VYAVDFNHRKEYHLDGTVLHSGGVVLDSLTRPSLLITDAYNSQVVHPARKDRYAAMF-DT 180
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 262
+ +L GG+VLLP DS+ RVLEL +L+ +W+++ LNYP+ L+ S T+ + K LE
Sbjct: 181 MLTSLNKGGSVLLPTDSSARVLELAYLLDQHWSQNQLNYPLIMLSNTSYHTVHFAKIMLE 240
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
WMG+ +T+ F SR+N + K+V L +LDN P GPK+V+AS SLE GF+ ++F+
Sbjct: 241 WMGEELTRKFSQSRENPYEFKYVRLCHKIEDLDNYP-GPKIVMASHHSLETGFARELFLR 299
Query: 323 W-ASDVKNLVLFTERGQFGTLARMLQAD------------------------PPPKAVKV 357
W +D +N ++ T+R GTLAR L D P A +
Sbjct: 300 WMTNDPQNTLILTDRSAPGTLARRLYDDWEQQTNKTATTTTVVNNNRTKVLVKPAIAYEN 359
Query: 358 TMS----RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVI 413
T+ +RVPL G EL YE Q ++EA +A+++ SK + D + D +
Sbjct: 360 TIDLRVYKRVPLEGAELQEYEAAQRAKAEKEAAQAAMLA--RSKIIMEEDESDVSD---M 414
Query: 414 DANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI 473
D + + + RD G MFP+ E + DD+GE I + Y+
Sbjct: 415 DEGDEDVEGLLTRQFDLYVRDTGKSGGFFKHAHSYRMFPYLEKRKKMDDYGEAIQIEHYM 474
Query: 474 IKD--EDMDQAAMHI--GGDDGKLDEGSASL---IL---DAKPSKVVSNELTVQVKCLLI 523
E M+Q ++ G + GK D+ L IL D P+K +S++ T V+C L
Sbjct: 475 KASELERMEQEKKNLGQGANFGKEDDMQIDLQEPILPGRDETPTKYISSDETFLVRCQLR 534
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEET 581
++D EG +DGRS+KTIL +AP KL++VHGS +T+ L+ C +++ ++TP + E
Sbjct: 535 YVDLEGLSDGRSMKTILPQIAPRKLIIVHGSESSTKDLESACQGIEYFTKEIFTPSVGEV 594
Query: 582 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
++V++ Y+V+L++ ++S++ F KL DYE+A V
Sbjct: 595 LNVSAATNIYRVKLTDSMVSSLRFSKLDDYELARV 629
>gi|410962841|ref|XP_003987977.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Felis catus]
Length = 690
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/725 (32%), Positives = 375/725 (51%), Gaps = 131/725 (18%)
Query: 93 LGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD Y SR + + +L +SQ +L GKG G+ + P AG
Sbjct: 1 MGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAG 60
Query: 135 HLLGGTVWKITKDGED-VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGT+WKI KDGE+ ++YAVD+N ++E HLNG LE RP++LITD++NA + QP R
Sbjct: 61 HMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYV 249
+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L V
Sbjct: 121 KQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 SYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQP 239
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+E
Sbjct: 240 DLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKE 299
Query: 370 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 429
L Y E++ K+ S + + ++ ++ D+ +P
Sbjct: 300 LEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDVEEDIDQPSA 342
Query: 430 GRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KD 476
+ + D+++ G F + PMFP E +WD++GE+I P+D+++ +
Sbjct: 343 HKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATE 402
Query: 477 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
E+ + + D +D+ + + P+K +S ++++K + +IDYEGR+DG SI
Sbjct: 403 EEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSI 457
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYK 592
K I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+
Sbjct: 458 KKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQ 515
Query: 593 VQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML-------------------- 628
V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 516 VRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAP 575
Query: 629 ---------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPF 656
++P P PP H+SV + + +++D K
Sbjct: 576 SDSSVLAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQV 635
Query: 657 LSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
L +GIQ EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY
Sbjct: 636 LLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYE 685
Query: 717 QFYLL 721
Q+ ++
Sbjct: 686 QYAIV 690
>gi|393910520|gb|EJD75913.1| cleavage and polyadenylation specificity factor subunit 2, variant
[Loa loa]
Length = 664
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/636 (36%), Positives = 350/636 (55%), Gaps = 76/636 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + S
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 338 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 380
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 381 KKEEALKASLVKEE----------------------ESKASLGPDNNLSGDPMVIDANNA 418
+ E + + + +++ K + N S + A
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 419 NASADVVEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDD 471
+ SA + R DI+ F S PMFP+ E + WDD+GE+I P++
Sbjct: 479 DMSAAQIAEQ--RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEE 536
Query: 472 YIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYE 528
Y+I D + H G DG D L + + PSK +S + ++V C + FID+E
Sbjct: 537 YMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFE 596
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
GR+DG S K ILS + P +L++VHGS+ AT HL Q+
Sbjct: 597 GRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQY 632
>gi|426377790|ref|XP_004055637.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Gorilla gorilla gorilla]
gi|193785772|dbj|BAG51207.1| unnamed protein product [Homo sapiens]
Length = 690
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/725 (32%), Positives = 375/725 (51%), Gaps = 131/725 (18%)
Query: 93 LGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAG 134
+G + MYD Y SR + + +L +SQ +L GKG G+ + P AG
Sbjct: 1 MGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAG 60
Query: 135 HLLGGTVWKITKDGED-VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
H++GGT+WKI KDGE+ ++YAVD+N ++E HLNG LE RP++LITD++NA + QP R
Sbjct: 61 HMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRR 120
Query: 194 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYV 249
+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L V
Sbjct: 121 KQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNV 180
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 309
S + +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 SYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQP 239
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+E
Sbjct: 240 DLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKE 299
Query: 370 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 429
L Y E++ K+ S + + ++ ++ D+ +P
Sbjct: 300 LEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSA 342
Query: 430 GRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KD 476
+ + D+++ G F + PMFP E +WD++GE+I P+D+++ +
Sbjct: 343 HKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATE 402
Query: 477 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
E+ + + D +D+ + + P+K +S ++++K + +IDYEGR+DG SI
Sbjct: 403 EEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSI 457
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYK 592
K I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+
Sbjct: 458 KKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQ 515
Query: 593 VQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML-------------------- 628
V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 516 VRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAP 575
Query: 629 ---------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPF 656
++P P PP H+SV + + +++D K
Sbjct: 576 SDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQV 635
Query: 657 LSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
L +GIQ EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY
Sbjct: 636 LLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYE 685
Query: 717 QFYLL 721
Q+ ++
Sbjct: 686 QYAIV 690
>gi|172087214|ref|XP_001913149.1| cleavage and polyadenylation factor [Oikopleura dioica]
gi|18029276|gb|AAL56454.1| cleavage and polyadenylation factor-like protein [Oikopleura
dioica]
Length = 765
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 242/789 (30%), Positives = 399/789 (50%), Gaps = 92/789 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ LSG +E P +L+ ID F FL+DCGW + ++ L + IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SHPD LH G LPY + +LG++ P++ T P ++G + +YD LSR +V
Sbjct: 61 SHPDLLHCGMLPY-LSKLGITCPIYMTMPACKMGQMFLYDFVLSRTAVEDFDMFTLDDVD 119
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 161
T+L ++Q + G+ GI + P AGH++GGT WKI KD E+ +Y VD N ++
Sbjct: 120 AVFDRATQLKHNQTEAVRGQDYGIQIMPVQAGHMIGGTTWKIMKDEEEEYVYCVDVNHKR 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG L++F +P ++ITD + Q R +R E I T GGNVL+ D+A
Sbjct: 180 ETHLNGIQLDAFDKPTLMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR LE+ L+LE W + + ++ V++STI+ K +EWM + I F R+
Sbjct: 240 GRSLEMALMLEGIWNDERYGLGRVNLVMVSNVATSTIEAAKGMIEWMSEKIISKFTHKRE 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F L + L + E+ P+ PK++LA+ ++ GFS ++FV A+ KN V+ + R
Sbjct: 300 NIFDLTKMKLRSSIQEIARIPE-PKVILATPMDMDTGFSRELFVMMAAHPKNAVIMSGRS 358
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
G+L R + + ++ + M++R+PLVG EL YE+++ + + +K L +E +
Sbjct: 359 TKGSLCRKIIENEGMSSITLEMNKRLPLVGPELEEYEKQKEQERNANLIK-RLEEESSDE 417
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMF 451
+ +S + + D++ PH GG ++ + F P+F
Sbjct: 418 SENEMSETISVRKKTVKGKRTH---DIIMPHHVQKKEGGFFKKARKEKF--------PLF 466
Query: 452 PFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKLDEG 496
PF EN +WDD+GE+INPDDY I + +Q ++ G +D + +
Sbjct: 467 PFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRKKQK 526
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
+ + P+K + V ++C + FI++EGR DG S +LS + P +L+L+ +
Sbjct: 527 EEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRTKEK 586
Query: 557 ATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--DYEI 613
E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D E+
Sbjct: 587 YKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKDIEV 646
Query: 614 AWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLKMAD 652
A + V + ENG + +L P++ + H S+ + D K+ +
Sbjct: 647 ARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTKLTE 706
Query: 653 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
LK L G+Q EF GG L C V+I++ S I +EG L EDY+ +R
Sbjct: 707 LKSNLIDCGMQAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFIVRK 756
Query: 713 YLYSQFYLL 721
+Y + ++
Sbjct: 757 MVYDNYAIV 765
>gi|47224566|emb|CAG03550.1| unnamed protein product [Tetraodon nigroviridis]
Length = 765
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/830 (30%), Positives = 400/830 (48%), Gaps = 180/830 (21%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQ------------------------NYHLSGKGEGIVVAPHVAGHLLG 138
+ +L YSQ ++ +GKG G+ + P AGH++G
Sbjct: 121 SAFDKIQQLKYSQIVSLKGKLASKRLFTWSKLPKYVMAFYATGKGHGLSITPLPAGHMIG 180
Query: 139 GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM 198
GT+WKI KD + H V+ ++ + YN + + R
Sbjct: 181 GTIWKIVKDVTSTV----------AHWRALVVLPYLSQTPSMQHMYNHVASSGTRCS--- 227
Query: 199 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVK 258
I +T AG V YP+ L VS + +++ K
Sbjct: 228 ---LIWRTKDAGLGV---------------------------YPLALLNNVSYNVVEFSK 257
Query: 259 SFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 318
S +EWM D + + FE R+N F +H+TL + ++L P PK+VL S LE+GFS +
Sbjct: 258 SQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRE 316
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQT 378
+F++W+ D KN ++ T R GTLAR L +P K + + + +RV L G EL Y E+
Sbjct: 317 LFIQWSKDSKNSIILTYRTTPGTLARYLIDNPGEKHLDLEVRKRVRLEGRELEEY-LEKD 375
Query: 379 RLKKEEALKASLVKE---EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI 435
R+KKE A K KE + S S D++ P + + + + +++ G R
Sbjct: 376 RIKKEAAKKLEQAKEVDVDSSDESDMDDDDDLDQPTTVKSKHHDL---MMKSEGSRK--- 429
Query: 436 LIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDD 490
F + PMFP +E +WD++GE+I +D+++ +E+ + + D
Sbjct: 430 --GSFFKQAKKSYPMFPTHEERIKWDEYGEIIRLEDFLVPELQATEEEKSKLDSGLTNGD 487
Query: 491 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 550
+D+ + L P+K +SN +++++ + +IDYEGR+DG SIK I++ + P +LV+
Sbjct: 488 EPMDQDLSVL-----PTKCISNVESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVI 542
Query: 551 VHGSAEATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
VHG EA+ L + C VYTP+++ETID TS+ Y+V+L + L+S++ F K
Sbjct: 543 VHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCKAK 602
Query: 610 DYEIAWVDA----EVGKTENGML------------------------------------- 628
D E+AW+D V K + G++
Sbjct: 603 DTELAWIDGVLDMRVVKVDTGVMLEDGVKEEAEDSELGMEITPDLGIEASSIAVAAHRAM 662
Query: 629 ---------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
++P P P H+SV + + +++D K L +GIQ EF G
Sbjct: 663 KNLFGEEEKEVSEESDIIPTLEPLPTPEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVG 722
Query: 669 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
G L C V +R+ AG +I +EG LCEDYYKIR LY Q+
Sbjct: 723 GVLVCNNMVAVRRT-EAG---------RISLEGCLCEDYYKIRELLYQQY 762
>gi|328866931|gb|EGG15314.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 768
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 260/800 (32%), Positives = 413/800 (51%), Gaps = 111/800 (13%)
Query: 1 MGTSVQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPL G + P YL+ ID F L+DCGWN D SLL L KVA+ +DA+L
Sbjct: 1 MTSVIKFTPLCGGAGQITPPCYLLEIDNFCILLDCGWNAKLDISLLDELKKVANKVDAIL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------ 107
L++PDT H+GALPYA+ +LGL+ ++ T P++++G + MYD Y SR +
Sbjct: 61 LTYPDTEHIGALPYAIGKLGLTGKIYGTTPIHKMGQIFMYDLYTSRMAQEEFDRFDLDEV 120
Query: 108 --------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
L+YSQ+Y + +GI++ P++AGH++GG+VW+I K+ + ++YAVD N
Sbjct: 121 DMCFDQSRFKELSYSQHYEIPD-SDGIIITPYLAGHMVGGSVWRIAKESDVIVYAVDINH 179
Query: 160 RKEKHL-----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDA----ISKTLRAG 210
R+E HL NG + +P LITDA + L PP Q++ A + K+LR G
Sbjct: 180 RRESHLEGFLQNGLLSPELAKPTHLITDALHIL--DPPPQKKADKDTAMLAQLRKSLRDG 237
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
GN+L+ D+AGRVLELLL ++ YW++H L Y + F V+ ++ KS LE+M +
Sbjct: 238 GNILVATDTAGRVLELLLTIDQYWSQHRLGSAYSVVFFNSVTYYVREFAKSQLEFMSTAA 297
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK--LVLASMASLEAGFSHDIFVEWASD 326
+ FE +N F +++ + + +L+ P+ + +VLAS LE GF+ D+F++WA+D
Sbjct: 298 SSKFEQKNENIFNFRNIKICNSFKQLEELPNLTRNYVVLASSKDLETGFAKDLFIQWAND 357
Query: 327 VKNLVLFTERGQFGTLARML-QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 385
KN+V+ T+ GTL L + +++VT +RV L GEEL YEE R K EE
Sbjct: 358 PKNMVMLTDNMDEGTLGDQLSKCQSGIDSIQVTHGKRVELEGEELREYEETIQRKKDEEK 417
Query: 386 LKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST 445
+ +E KA+ ++ +I N P R+ D+ F+ +
Sbjct: 418 RLEEEKRLQEEKANRKERMDVDDQEELITKKN---------PLLNRF-DMHRSDFI--NE 465
Query: 446 SVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK 505
PMFPF E +WD++GE + + I E DQ + DD ++E + + K
Sbjct: 466 HYIPMFPFTEPIVKWDEYGEQ-DEELLNIAKELKDQKDKEM-KDDVVMEEENKQEEEETK 523
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P K+V+ V+V C + DY+G +DG+S+KTI+ +AP L+LV G+ + + L
Sbjct: 524 PKKIVTFNTMVKVNCSVTRFDYQGCSDGQSLKTIIQKIAPTNLILVRGNQQCVDELLDFA 583
Query: 566 LKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 620
K + +++P I ID+TS + + L+ ++ KL DYEIA+++A+V
Sbjct: 584 KKSLRVKGLFSPAISNQIDLTS-------ETHDSLIKSLNTSKLMDYEIAYIEAKVHIED 636
Query: 621 ----GKTENG-----------------------------------MLSLLPISTPAPPHK 641
G T +L ++P+ + H
Sbjct: 637 IILNGATNAATPLAITSPTTSTAITTTNDSKALTVVQPKEKKIIPLLDIMPVE-ESKGHN 695
Query: 642 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
VGD+K+++ K L+ +G QV+F G L C V + + G I I+G
Sbjct: 696 VSFVGDVKLSEFKDVLTREGFQVQFDKGILSCNGLVYL-------WREEVDGNSCINIDG 748
Query: 702 PLCEDYYKIRAYLYSQFYLL 721
+ E+YY ++ LYSQF +L
Sbjct: 749 VMSEEYYLVKELLYSQFKIL 768
>gi|313232558|emb|CBY19228.1| unnamed protein product [Oikopleura dioica]
Length = 764
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 241/789 (30%), Positives = 398/789 (50%), Gaps = 93/789 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ LSG +E P +L+ ID F FL+DCGW + ++ L + IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SHPD LH G LPY + +LG++ P++ T P ++G + +YD LSR +V
Sbjct: 61 SHPDLLHCGMLPY-LSKLGITCPIYMTMPACKMGQMFLYDFVLSRTAVEDFDMFTLDDVD 119
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 161
T+L ++Q + G+ GI + P V GH++GGT WKI KD E+ +Y VD N ++
Sbjct: 120 AVFDRATQLKHNQTEAVRGQDYGIQIMP-VQGHMIGGTTWKIMKDEEEEYVYCVDVNHKR 178
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG L++F +P ++ITD + Q R +R E I T GGNVL+ D+A
Sbjct: 179 ETHLNGIQLDAFDKPTLMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTA 238
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR LE+ L+LE W + + ++ V++STI+ K +EWM + I F R+
Sbjct: 239 GRSLEMALMLEGIWNDERYGLGRVNLVMVSNVATSTIEAAKGMIEWMSEKIISKFTHKRE 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F L + L + E+ P+ PK++LA+ ++ GFS ++FV A+ KN V+ + R
Sbjct: 299 NIFDLTKMKLRSSIQEIARIPE-PKVILATPMDMDTGFSRELFVMMAAHPKNAVIMSGRS 357
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
G+L R + + ++ + M++R+PLVG EL YE+++ + + +K L +E +
Sbjct: 358 TKGSLCRKIIENEGMSSITLEMNKRLPLVGPELEEYEKQKEQERNANLIK-RLEEESSDE 416
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMF 451
+ +S + + D++ PH GG ++ + F P+F
Sbjct: 417 SENEMSETISVRKKTVKGKRTH---DIIMPHHVQKKEGGFFKKARKEKF--------PLF 465
Query: 452 PFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKLDEG 496
PF EN +WDD+GE+INPDDY I + +Q ++ G +D + +
Sbjct: 466 PFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRKKQK 525
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
+ + P+K + V ++C + FI++EGR DG S +LS + P +L+L+ +
Sbjct: 526 EEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRTKEK 585
Query: 557 ATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--DYEI 613
E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D E+
Sbjct: 586 YKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKDIEV 645
Query: 614 AWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLKMAD 652
A + V + ENG + +L P++ + H S+ + D K+ +
Sbjct: 646 ARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTKLTE 705
Query: 653 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
LK L G+ EF GG L C V+I++ S I +EG L EDY+ +R
Sbjct: 706 LKSNLIDCGMHAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFIVRK 755
Query: 713 YLYSQFYLL 721
+Y + ++
Sbjct: 756 MVYDNYAIV 764
>gi|290981012|ref|XP_002673225.1| predicted protein [Naegleria gruberi]
gi|284086807|gb|EFC40481.1| predicted protein [Naegleria gruberi]
Length = 808
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 257/844 (30%), Positives = 419/844 (49%), Gaps = 164/844 (19%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF---DPSLLQPLSKVASTIDA 57
M +S+Q PL G NE P+ ++ +D + L+DCGW+++F D + + ++ IDA
Sbjct: 1 MSSSIQFVPLVGSQNEGPVCSILIVDDYYILLDCGWDENFNTKDSHIQEIINNYRDKIDA 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGL-----SAPVFSTEPVYRLGLLTMYDQYLSRR------ 106
+L+S D H GALPY + + G+ A +F+T P+ ++G + +YD Y + R
Sbjct: 61 ILISQSDIYHCGALPYLVGKCGILENKKKAKIFATLPIVKMGQMHLYDAYQNIRQHQDFE 120
Query: 107 ------------SVTRLTYSQNYHLSGK-------------------------------- 122
S+ +L YSQ Y LS +
Sbjct: 121 TFDLDDVDLCFDSIHQLKYSQRYPLSQQTTIITQIEETDENGEEGEGGVVGSSGSVAEME 180
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPAVLIT 181
GE +V+ P +AGH LGGT+WK+TK+ ++++YA+D+N + E+HLNG+VL E +PA+LIT
Sbjct: 181 GEKLVICPFLAGHTLGGTIWKLTKETDEIVYAIDFNIKTERHLNGSVLGELGGKPALLIT 240
Query: 182 DAYN----------ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
DAYN + P + +I+ TL GGNVL+P+++AGRV EL+L+LE
Sbjct: 241 DAYNVKPIPSSDLGGVDKAPAIK----IMKSITDTLTGGGNVLVPIETAGRVFELMLLLE 296
Query: 232 DYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 289
+ W N+ + LT V+ TI++ LEWM D I K F+ R+N F ++ ++
Sbjct: 297 ERWKRDPQMANFELILLTNVAYRTIEFASHQLEWMSDKIMKGFDEKRENPFKFQYFSVCH 356
Query: 290 NKSEL-----------------------DNAPDG---PKLVLASMASLEAGFSHDIFVEW 323
N EL + A G P +VLAS +L+ G++ ++FV+W
Sbjct: 357 NVEELMDKLQKKEQMRMMMENQMNDEDEETATTGKHTPMVVLASSNTLDYGYARELFVKW 416
Query: 324 ASDVKNLVLFTERGQFGTLARML-------QADPPPKAVKVTMSRRVPLVGEELIAYEEE 376
D +NLV+F ER +L+R L +++ + + +T+ RRV L GEEL YE+E
Sbjct: 417 CEDQRNLVMFIERSAPNSLSRKLINKLRAKKSERLDENMSLTLYRRVALKGEELEKYEKE 476
Query: 377 QTRLKKEEA---------------LKASLVKEEESKASLGPDNNLSGDPMVIDANNANAS 421
Q +LK+E ++ ++ + K S L+G +++
Sbjct: 477 Q-QLKQEAEKKRREEEERNKRVIHVRDEDDEDLDLKKSKQFREELTGGA----DDDSQTH 531
Query: 422 ADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQ 481
A + P RY S MFP E D++GE ++P+D+ ++ DQ
Sbjct: 532 ARLYLPENMRYH------------SQYLMFPCIERGISKDEYGESVDPEDFKLRLLQADQ 579
Query: 482 AAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
+ I D+ +E PSK+ S ++V++ C L ++D+EGR+ IK IL
Sbjct: 580 SE-QIMADNTIHEEEDYY----EPPSKIESENVSVRILCKLAYLDFEGRSSPVDIKNILQ 634
Query: 542 HVAPLKLVLVHGSAEATEHLKQHC-LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 600
+ P KL+L+HGS E+ L +C K + + TP E +D+T D +KV+L + L+
Sbjct: 635 KINPRKLILIHGSQESIIELSDYCETKKISEQIKTPMDLEVMDMTMDTNMFKVKLKQDLL 694
Query: 601 SNVLFKKLG-DYEIAWVDAEVGKTENGMLSLLPISTPAPP---HKSVLVGDLKMADLKPF 656
S + + K G +Y++A+++ + + E G S +P P P H ++L+GDLK+
Sbjct: 695 SQIHYIKSGTNYDMAYIEG-IYRVEEG--SDIPCIHPNPKPKGHPTMLIGDLKLNQFFKL 751
Query: 657 LSSKGIQVEF-AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L G+ EF GG L C + V ++K +G +I + G L Y+++R LY
Sbjct: 752 LKESGLSAEFQQGGVLVCNDEVMLQKDKKSG---------EIQVFGSLSPTYFQVRELLY 802
Query: 716 SQFY 719
+FY
Sbjct: 803 -KFY 805
>gi|213407230|ref|XP_002174386.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
gi|212002433|gb|EEB08093.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
Length = 786
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 258/792 (32%), Positives = 411/792 (51%), Gaps = 114/792 (14%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL- 80
L+ +DG + LID G D SL P V D +LLSH D HLG L YA +
Sbjct: 17 LLELDGVHILIDPG----SDNSLTHPSIDVVP--DLILLSHSDLAHLGGLVYACRHYNWK 70
Query: 81 SAPVFSTEPVYRLGLLTMYDQYLSR--------------RSVTRLTYSQNYHLSGKGEGI 126
+A +++T PV +G +TMYD S S+T L YSQ L GK GI
Sbjct: 71 TAFIYATLPVINMGRMTMYDAIKSNLVTDITIADVDLVFDSITTLRYSQPASLMGKCNGI 130
Query: 127 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------VLESFVRPAVL 179
+ AGH LGGT+W ITK+ E ++YAVD+N K+KHLNGT +LE RP L
Sbjct: 131 NITAFNAGHTLGGTLWSITKESESLVYAVDWNHSKDKHLNGTALYSNGQILEILTRPNTL 190
Query: 180 ITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
+TDA NAL + P R++R E +A+ TL GG+VLLP+D+A RV+EL L+ +WA
Sbjct: 191 VTDANNALISIPARKKRDEALIEAVMSTLLKGGSVLLPMDAASRVIELCYFLDTHWASSQ 250
Query: 239 --LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296
L++PIYFL+Y S+ TI Y KS +EWMGD+I + F + ++ +H+ + + S+L
Sbjct: 251 PPLSFPIYFLSYSSAKTIGYAKSMIEWMGDNIVRDFGMN-ESLLEFRHIQTITHPSQLSQ 309
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASD-VKNLVLFTERGQF--GTLARML------- 346
GPK+++A+ +LE+GFS ++ ++ D NL+L T++ ++ +LA+
Sbjct: 310 ISPGPKVIIATSLTLESGFSQNVLLDIMPDNSNNLILLTQKSRYSENSLAKQFYRYWERA 369
Query: 347 QADPPPKAVKVTM--------SRRVPLVGEELIAYEE-EQTRLKKE------EALKASLV 391
P V M PL GEEL ++E EQ++ ++ E +++
Sbjct: 370 SRKSPENFSSVGMYFEQSIQVKHSEPLQGEELREFQEKEQSKRTRDAEDIALELRNRTIL 429
Query: 392 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI-LIDGFVPPSTSVAPM 450
E+ES+ S ++ L+ P + + N +A+ G+ D+ L D + S M
Sbjct: 430 DEDESEESSSDEDELTQVPELSNTNLGSAAF-----MSGKTFDLNLRDPNIASLQSKFKM 484
Query: 451 FPFYENNSEWDDFGEVINPDDYIIK---------DEDMDQAAMHIGG--------DDGKL 493
FP+ E +DD+GE++ +D+ ++ +E+ D A H ++G++
Sbjct: 485 FPYVEKRRRFDDYGEILRQEDFAMEERTAGIVEGEENEDYAPAHESTGKRKWAEVNNGQI 544
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
E + + PSK+V+ +++ C + FID EG DGRS+KTI+ V P +LVL+H
Sbjct: 545 SENQLNEDMPDVPSKIVTTTRYLKISCQVAFIDMEGLHDGRSLKTIIPQVNPRRLVLIHA 604
Query: 554 SAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ E +K+ C L VY P +E ++V+ D+ ++ ++LS++L+ ++++KKLG+Y
Sbjct: 605 TDEERADMKKTCAALTAFTKDVYCPDYKEVVNVSIDVNSFNMKLSDELVKSLIWKKLGNY 664
Query: 612 EIAWVDAEVGKTEN----GMLSLLPISTP-----------------APPHKSVLVGDLKM 650
E+A + A++ EN S P+ AP + VG++++
Sbjct: 665 EVAHLMAKIRMPENVDEEAEESKEPVDPKDNLPILDSLKTQQDFALAPRAAPIFVGNVRL 724
Query: 651 ADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYK 709
A L+ L +GI VE G G L CG V IRK+ +IVIEG + +++
Sbjct: 725 AALRKTLMDQGISVELKGEGVLLCGGIVAIRKLDNG----------RIVIEGGISNRFFE 774
Query: 710 IRAYLYSQFYLL 721
IR +Y ++
Sbjct: 775 IRKTIYDTLAMV 786
>gi|341883504|gb|EGT39439.1| CBN-CPSF-2 protein [Caenorhabditis brenneri]
Length = 822
Score = 365 bits (936), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 252/839 (30%), Positives = 417/839 (49%), Gaps = 135/839 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDSDYILLDCGWDERFELKYFEELKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDLVYSHLDVEEFDHYTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N +K
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVHFTAIPAGHMIGGSIWRICRVTGEDIIYCVDFNHKK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G ++F RP +LIT A++ Q R+ R E+ I +T+R G+ ++ +D+A
Sbjct: 180 ERHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDELLVTKILRTVRQKGDCMVVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK-SFETSR 276
GRVLE+ +L+ W+ Y + +++V+SS + + KS LEWM +S+ K ++R
Sbjct: 240 GRVLEIAYLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMHESLFKYDSNSTR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LK+VTL + EL PK+VL S +EAGFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKNVTLCHSHQELLRVR-SPKVVLCSSQDMEAGFSRELFLDWCSDSRNGVILTAR 358
Query: 337 GQFGTLARML-----QAD-----PPPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
TLA L +A+ P + + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PSSFTLAAKLVNLAERANDGILRPEDRLISLLVKKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESK------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR 433
++ E A + + E + A + P ++ N + D++ ++
Sbjct: 419 MRMERARRQAQANESDDSDDDDMAAPIVPRHSEKDFRSFDGIENDSHCFDIM----AKWD 474
Query: 434 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-------KDEDMDQAAMHI 486
+ F + PM+P+ E +WDD+GEVI P+DY + K ++ D+ +
Sbjct: 475 NQQKASFFKTTKKSFPMYPYIEEKIKWDDYGEVIKPEDYTVISKIDLRKGQNKDEPVVVQ 534
Query: 487 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 546
+D + + + + ++ P+K V + ++V C + FIDYEG +DG S K +L+ + P
Sbjct: 535 KREDEE-EVYNPNDHVEEMPTKCVEFKNRIEVCCRVEFIDYEGISDGESTKKMLAGLTPR 593
Query: 547 KLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
++++VHGS + T L + + + TP + ID + + ++V LS+ L++ +
Sbjct: 594 QIIIVHGSRDDTRDLYAYFSDNGIKSDMMKTPVAGDLIDASVESFIFQVSLSDALLAELQ 653
Query: 605 FKKLGD-YEIAWVDAEVGKTEN-------GMLSLL----------------PIST----- 635
FK++ + +AW+DA+V + EN G +L+ P+ T
Sbjct: 654 FKQVSEGNSLAWLDAKVTEKENLDNMLISGTSNLMIGNGNHDTSGSDQNEEPMETDENGL 713
Query: 636 -------------PAPPHK-------------------SVLVGDLKMADLKPFLSSKGIQ 663
P P K ++ V D KM+D K L +G +
Sbjct: 714 QENGNSDRNGFKKPKEPEKIRGTLILDPLQRSRIPVHQAIFVNDPKMSDFKNLLVERGYK 773
Query: 664 VEFAGGALRC-GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EF G L G +IR+ S T +EG +DYYK+R Y QF +L
Sbjct: 774 AEFLSGTLIINGGKCSIRR----------SETGSFQMEGAFTKDYYKVRKLFYDQFAVL 822
>gi|74183852|dbj|BAE24504.1| unnamed protein product [Mus musculus]
Length = 493
Score = 362 bits (929), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/505 (38%), Positives = 294/505 (58%), Gaps = 49/505 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII 474
MFP E +WD++GE+I P+D+++
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLV 487
>gi|195503420|ref|XP_002098644.1| GE26465, isoform B [Drosophila yakuba]
gi|194184745|gb|EDW98356.1| GE26465, isoform B [Drosophila yakuba]
Length = 548
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 205/559 (36%), Positives = 316/559 (56%), Gaps = 58/559 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPDVE 415
Query: 397 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 457 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 499
+ D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 466 KVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGLGADQQTNGGIGDNDVQ 525
Query: 500 LILDAKPSKVVSNELTVQV 518
L+ KP+K+++ T++V
Sbjct: 526 LL--EKPTKLINQRKTIEV 542
>gi|449662070|ref|XP_004205466.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Hydra magnipapillata]
Length = 568
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 216/586 (36%), Positives = 330/586 (56%), Gaps = 46/586 (7%)
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 222
HLNG VLE+ RPA+LITD+Y AL NQ R++R++ ++I LR GNVLL VD+AGR
Sbjct: 1 HLNGAVLETLSRPALLITDSYAALCNQERRKERDIQLMNSILSALRQDGNVLLAVDTAGR 60
Query: 223 VLELLLILEDYWA--EHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
+LEL+ +L+ W+ E L+ Y + L VS + +++ KS +EWM D + KSFE R N
Sbjct: 61 ILELMQLLDQMWSAKESGLSVYSLALLNNVSYNVVEFAKSQVEWMSDRMMKSFEVDRRNP 120
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KH+TL ELD P PK+VLAS A + GFS D+FV+WAS+ KN V+FT +
Sbjct: 121 FAFKHITLCHFLKELDQLP-SPKVVLASAADMNCGFSKDLFVQWASNPKNSVIFTFKTSP 179
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKAS 399
G+LAR L +P ++V++ + +RV L G EL Y E + ++ L+ L + + + +
Sbjct: 180 GSLARTLIDNPKIESVELEVFKRVRLEGVELSQYLEVEKEKARQAKLQRKLTEVDVRQEN 239
Query: 400 LGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE 459
+ D + S + M + N + ++ R++ + PMFPF E +
Sbjct: 240 VFKDESESEEEMEEENLNKSKYDLMITNEKLRHKSSFF-----KQAKIYPMFPFKEERLK 294
Query: 460 WDDFGEVINPDDYIIKDED-MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQV 518
WDD+GE+I P+DY+I + + M++ I +D K E +L + P+K VS + V V
Sbjct: 295 WDDYGEIIRPEDYVIIENNLMEEEGPKITIEDMK--EDLEALEIKEPPTKSVSEMVKVDV 352
Query: 519 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKHVCPHVYT 575
+C + +ID+EGR+DG S++ ILS V P +L+L+HGS ATE L ++C + VYT
Sbjct: 353 RCKISYIDFEGRSDGESVRRILSIVKPRQLILIHGSPAATEALSRYCQTSTQFNVSKVYT 412
Query: 576 PQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG--------- 626
P E +D T + Y+V+L + L+S++ F D E+AWVD ++ G
Sbjct: 413 PYTNEMVDATRESHIYQVKLKDSLVSSLKFAVARDTELAWVDGQLVMEARGEKFNQIEQE 472
Query: 627 ------MLSLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 675
++P+ PP H +V + + +++D K L+ GIQ EF GG L C
Sbjct: 473 NSEKVEKQDVVPVLEQLPPEMIPGHATVFIDEPRLSDFKQVLTKAGIQAEFTGGVLVCNN 532
Query: 676 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V +R+ G++G +I IEG LCE+YY IR LY Q+ ++
Sbjct: 533 VVAVRR----GEQG------KISIEGGLCEEYYVIRQLLYDQYAIV 568
>gi|430813604|emb|CCJ29043.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813606|emb|CCJ29045.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 243/781 (31%), Positives = 402/781 (51%), Gaps = 107/781 (13%)
Query: 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75
E + ++S L+D G ND LL ++ D +L SH D H+G+ +
Sbjct: 11 ERSSASVLSFGEIKILLDPGAND-----LLSEFLELDFIPDLILFSHSDVSHVGSFVHGF 65
Query: 76 KQLGL-SAPVFSTEPVYRLGLLTMYDQY-------LSRR-------SVTRLTYSQNYHLS 120
K G P+++T P++ +G +TM D Y +S + S+ L YSQ LS
Sbjct: 66 KHSGWHDVPIYATLPIFNMGRVTMSDCYKNIMDNTISTKDIDNAFDSIITLRYSQPISLS 125
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG-------TVLESF 173
GK GI + + +GH LGGT+WKITKD E+++Y V++N K+ HLNG T+L++
Sbjct: 126 GKLNGISITAYNSGHSLGGTIWKITKDSENIVYCVNWNHSKDSHLNGSILYSNGTILDAL 185
Query: 174 VRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
+RP +LITDA N+ + P R++R E F D+I TL GNVL+P D+A R LE IL+
Sbjct: 186 IRPTILITDAINSNISIPSRKKRTEAFFDSIKNTLAQQGNVLIPTDAATRSLEFCWILDR 245
Query: 233 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
YW +H+L YPIYFL++ + I Y +S +EWM DSI + +S + F +V ++ N+
Sbjct: 246 YWKQHNLQYPIYFLSHTGNKAISYAQSMIEWMSDSIISEYGSS-GSVFEFTYVKVITNEF 304
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVE-WASDVKNLVLFTERGQF--GTLARML--- 346
+ + GPK++LA+ ++++ GFS IF++ A D KNLV+ +++ + +L++ L
Sbjct: 305 QFLSMVSGPKVILATSSNMDCGFSQKIFLDSIAKDSKNLVILSQKSIYYENSLSKDLLDR 364
Query: 347 ---------QADPPPKAVK----VTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKE 393
Q PP + VT+ VPLVG EL Y+E++ +++EA A L+ E
Sbjct: 365 WNLAIEHSDQLIPPAVILNFNRTVTIRTSVPLVGSELEKYQEKEKLRREKEA--AKLIME 422
Query: 394 EESK------------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFV 441
+++ S + D M+ A SA ++ G + L +
Sbjct: 423 LQNRDLFDSSDSDLNDDSNDRKTHFRNDSMI-----AKGSASLLT--SGVHDLYLQTNEI 475
Query: 442 PPSTSVAPMFPFYENNSEWDDFGEVINPDDYI-IKDEDMDQAAMH--------------I 486
+ MFP E +DDFGE+I P+ + I +ED++ A +
Sbjct: 476 RKMSPRFKMFPTLEKRRRFDDFGEIIIPEKFFRIIEEDLEFNANNELNKSINTMTKKRKW 535
Query: 487 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 546
G + G+ ++ PSK + E + +KC + +ID EG DG+S+KTI+ V P
Sbjct: 536 AGISNNIQNGNIDKDINV-PSKTIITEEKILIKCSVRYIDMEGLHDGKSLKTIIPMVNPR 594
Query: 547 KLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
KLVL++ + EA +++ C L +Y+P E + + L +Y ++LS+ +++ +
Sbjct: 595 KLVLINSTQEAKDNMMATCRSLTSFTNDIYSPLQGEVLKIGIKLNSYNLKLSDNIINTLR 654
Query: 605 FKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSV---------LVGDLKMADLKP 655
+KKLGDY ++ V ++ + + + LPI H ++ VGD+K+ +K
Sbjct: 655 WKKLGDYNVSHVIGKLKLSADFTETNLPILEILSTHSNIRNIPQSHPLFVGDVKLTQVKQ 714
Query: 656 FLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 714
L +G E G G L C VT+RK+G GG ++++EG + +++Y +R +
Sbjct: 715 LLQDQGHVAELIGEGVLLCDGLVTVRKIG-----GG-----KVILEGGVSQEFYDVRKIV 764
Query: 715 Y 715
Y
Sbjct: 765 Y 765
>gi|74194185|dbj|BAE24650.1| unnamed protein product [Mus musculus]
Length = 396
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 249/396 (62%), Gaps = 24/396 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 373
GTLAR L +P K ++ + +RV L G+EL Y
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEY 395
>gi|74188762|dbj|BAE28111.1| unnamed protein product [Mus musculus]
Length = 412
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 248/393 (63%), Gaps = 24/393 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEEL 370
GTLAR L +P K ++ + +RV L G+EL
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKEL 392
>gi|308480408|ref|XP_003102411.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
gi|308262077|gb|EFP06030.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
Length = 850
Score = 341 bits (875), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 215/687 (31%), Positives = 360/687 (52%), Gaps = 74/687 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLRVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEDLKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N +K
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVHFTAMPAGHMIGGSIWRICRVTGEDIIYCVDFNHKK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
++HLNG ++F RP +LIT A++ Q R R + I +T+R G+ ++ +D+A
Sbjct: 180 DRHLNGCSFDNFNRPHLLITGAHHISLPQMKRMDRDQQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITK-SFETSR 276
GRVLEL +L+ W A+ L+ Y + +++V+SS + + KS LEWM + + K ++R
Sbjct: 240 GRVLELAYLLDQLWGNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSNSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LKH+TL + EL PK+VL S +E+GFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKHITLCHSHQELMRVR-SPKVVLCSSQDMESGFSRELFLDWCSDSRNGVILTAR 358
Query: 337 GQFGTLARML-----QADP-----PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
TLA L +A+ + + +++ +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PSSFTLAAKLVNLAERANDGVLRNEDRLISLSVKKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNAN--ASADVVEPHGGRYRDILI 437
++ E A + + E + P+ + ++ S D +E DI+
Sbjct: 419 IRMERARRQAQANESDDSDDD-----DMAAPINVTRHSEKDYRSFDGIESDNTHCFDIMS 473
Query: 438 D-------GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDD 490
F + PM+P+ E +WDD+GEVI P+DY + + + + GG+
Sbjct: 474 KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTV----ISKIDLRKGGNK 529
Query: 491 GKLDEGSASLI----------LDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 540
+ ++ P+K V + +++ C + FI+YEG +DG S K +L
Sbjct: 530 DEPVVVKKREEEEEVYNPNDHVEEMPTKCVEFKNRIEISCRVEFIEYEGISDGESTKKML 589
Query: 541 SHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEK 598
+ + P ++++VHGS + T L + + + TP + ID + + Y+V LS+
Sbjct: 590 AGLHPRQIIIVHGSRDDTRDLYAYFCDNGFAADMMKTPVAGDLIDASVESFIYQVALSDA 649
Query: 599 LMSNVLFKKLGD-YEIAWVDAEVGKTE 624
L++ + FK++ + +AW+DA V + E
Sbjct: 650 LLAEIHFKEVSEGNSLAWMDARVMEKE 676
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 619 EVGKTENGMLSLLPISTP-APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEY 676
E G L L P+ P H+++ V D K++D K L KG + EF G L G
Sbjct: 757 EAAAKPRGNLILEPLPKKLIPIHQAIFVNDPKLSDFKNLLVEKGYKAEFLSGTLLINGGK 816
Query: 677 VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+IR+ G +EG L +DYYK+R Y QF +L
Sbjct: 817 CSIRR-----------GEMGFSMEGALSKDYYKLRNLFYDQFAIL 850
>gi|17559452|ref|NP_504822.1| Protein CPSF-2 [Caenorhabditis elegans]
gi|18201967|sp|O17403.1|CPSF2_CAEEL RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|351057814|emb|CCD64424.1| Protein CPSF-2 [Caenorhabditis elegans]
Length = 843
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 219/689 (31%), Positives = 364/689 (52%), Gaps = 66/689 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +DG L+DCGW++ F + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH+LGG++W+I + GED++Y VD+N +K
Sbjct: 121 TAFEKVEQVKYNQTVVLKGDS-GVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 ERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 276
GRVLEL +L+ W+ Y + +++V+SS + + KS LEWM + + K +S R
Sbjct: 240 GRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LKHVTL + EL PK+VL S +E+GFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKHVTLCHSHQELMRVR-SPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
Query: 337 GQFGTLARML-----QADP-----PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
TLA L +A+ + + + + +RV L GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAAKLVNMAERANDGVLKHEDRLISLVVKKRVALEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESK------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR 433
L+ E A + + E + A + P ++ + N + D++ ++
Sbjct: 419 LRMERARRQAQANESDDSDDDDIAAPIVPRHSEKDFRSFDGSENDAHTFDIM----AKWD 474
Query: 434 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-------KDEDMDQAAMHI 486
+ F + PMFP+ E +WDD+GEVI P+DY + K ++ D+ +
Sbjct: 475 NQQKASFFKTTKKSFPMFPYIEEKVKWDDYGEVIKPEDYTVISKIDLRKGQNKDEPVVVK 534
Query: 487 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 546
++ + + + P+K V + V+V C + FI+YEG +DG S K +L+ + P
Sbjct: 535 KREEEEEVYNPNDHV-EEMPTKCVEFKNRVEVSCRIEFIEYEGISDGESTKKLLAGLLPR 593
Query: 547 KLVLVHGSAEATEHLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
++++VHGS + T L + + P+ +D + + Y+V LS+ L++++
Sbjct: 594 QIIVVHGSRDDTRDLVAYFADSGFDTTMLKAPEAGALVDASVESFIYQVALSDALLADIQ 653
Query: 605 FKKLGD-YEIAWVDAEVGKTE--NGMLSL 630
FK++ + +AW+DA V + E + ML++
Sbjct: 654 FKEVSEGNSLAWIDARVMEKEAIDNMLAV 682
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEYVTIRKVGPAGQKGGGSGTQQ 696
P H++V V D K++D K L+ KG + EF G L G +IR+ + T
Sbjct: 769 PIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRR----------NDTGV 818
Query: 697 IVIEGPLCEDYYKIRAYLYSQFYLL 721
+EG +DYYK+R Y QF +L
Sbjct: 819 FQMEGAFTKDYYKLRRLFYDQFAVL 843
>gi|195392300|ref|XP_002054797.1| GJ24636 [Drosophila virilis]
gi|194152883|gb|EDW68317.1| GJ24636 [Drosophila virilis]
Length = 693
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 253/401 (63%), Gaps = 24/401 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED+IYA+D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIIYAIDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WAS+ N ++FT R
Sbjct: 301 NPFQFKHIHLCHTLADIYKLPAGPKVVLASTPDMESGFTRDLFVQWASNPNNSIIFTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ 377
G+L+ +++ P + +++ + RRV L G EL Y Q
Sbjct: 361 GPGSLSMELVENSTPGRQIELDVRRRVELEGAELEEYLRTQ 401
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 33/240 (13%)
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
KP+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +H
Sbjct: 464 KPTKLISQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQVVAKH 523
Query: 565 CLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG--- 621
C ++V V+ PQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 524 CEQNVGARVFAPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLGMRL 583
Query: 622 ------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGI 662
E L+L + P H SVL+ +LK++D K L I
Sbjct: 584 QAIDAPNQSEVTVEQDVAAQEGKTLTLETLEEDEIPVHNSVLINELKLSDFKQVLMRNNI 643
Query: 663 QVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EF+GG L C + +R+V ++ +EG L EDYYKIR LY Q+ ++
Sbjct: 644 NSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEDYYKIRELLYEQYAIV 693
>gi|268558798|ref|XP_002637390.1| Hypothetical protein CBG19097 [Caenorhabditis briggsae]
Length = 838
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 214/687 (31%), Positives = 359/687 (52%), Gaps = 74/687 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV+ T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N RK
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
++HL+G ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 DRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 276
GRVLEL +L+ WA Y + +++V+SS + + KS LEWM + + + +S R
Sbjct: 240 GRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LK+V L+ + EL PK+VL S +E GFS ++F++W +D +N V+ T R
Sbjct: 300 YNPFTLKNVNLVHSHLELIKIR-SPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Query: 337 -GQFGTLARMLQADP---------PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
F AR+++ K + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESKA----------SLGPDNNLSGDPMVIDANNANASADVVEPHG 429
++ E A + + E + L ++ S D + D++ + A
Sbjct: 419 IRMERARRQAQANESDDSDDDDIAAPIVPRLSEKDHRSFDAIENDSHCFDIMA------- 471
Query: 430 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY-IIKDEDMDQA------ 482
++ + F + PM+P+ E +WDD+GEVI P+DY +I DM +
Sbjct: 472 -KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTVISKIDMRKGKNKDEP 530
Query: 483 -AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
+H D+ ++ + + P+K V +++ C + FI+YEG +DG S K +L+
Sbjct: 531 VVVHKREDEEEVYNPNDH--DEEMPTKCVEFRNRIEISCRVEFIEYEGISDGESTKKMLA 588
Query: 542 HVAPLKLVLVHGSAEATEHLKQHCLKHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ P ++++VHGS + T L + + + TP E ID + + Y+V LS+ L
Sbjct: 589 GLMPRQIIIVHGSRDDTRDLYAYFTDNGFKKDQLNTPVANELIDASVESFIYQVSLSDAL 648
Query: 600 MSNVLFKKLGD-YEIAWVDAEVGKTEN 625
++ + FK++ + +AW+DA + + E+
Sbjct: 649 LAEIQFKEVSEGNSLAWIDARIQEKES 675
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 626 GMLSLLPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEYVTIRKVG 683
G L L P+ P H+++ V D K+++ K L KG + EF G L G +IR
Sbjct: 753 GTLILTPLPKKQIPVHQAIFVNDPKLSEFKNLLVDKGYKAEFFSGTLLINGGKCSIR--- 809
Query: 684 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G +G Q +EG +D+YK+R Y QF +L
Sbjct: 810 ------GETGFQ---MEGAFTKDFYKLRKLFYDQFAVL 838
>gi|229553940|sp|A8XUS3.2|CPSF2_CAEBR RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
Length = 842
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 214/687 (31%), Positives = 359/687 (52%), Gaps = 74/687 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV+ T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N RK
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
++HL+G ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 DRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 276
GRVLEL +L+ WA Y + +++V+SS + + KS LEWM + + + +S R
Sbjct: 240 GRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LK+V L+ + EL PK+VL S +E GFS ++F++W +D +N V+ T R
Sbjct: 300 YNPFTLKNVNLVHSHLELIKIR-SPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Query: 337 -GQFGTLARMLQADPPP---------KAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
F AR+++ K + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESKA----------SLGPDNNLSGDPMVIDANNANASADVVEPHG 429
++ E A + + E + L ++ S D + D++ + A
Sbjct: 419 IRMERARRQAQANESDDSDDDDIAAPIVPRLSEKDHRSFDAIENDSHCFDIMA------- 471
Query: 430 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY-IIKDEDMDQA------ 482
++ + F + PM+P+ E +WDD+GEVI P+DY +I DM +
Sbjct: 472 -KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTVISKIDMRKGKNKDEP 530
Query: 483 -AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
+H D+ ++ + + P+K V +++ C + FI+YEG +DG S K +L+
Sbjct: 531 VVVHKREDEEEVYNPNDH--DEEMPTKCVEFRNRIEISCRVEFIEYEGISDGESTKKMLA 588
Query: 542 HVAPLKLVLVHGSAEATEHLKQHCLKHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ P ++++VHGS + T L + + + TP E ID + + Y+V LS+ L
Sbjct: 589 GLMPRQIIIVHGSRDDTRDLYAYFTDNGFKKDQLNTPVANELIDASVESFIYQVSLSDAL 648
Query: 600 MSNVLFKKLGD-YEIAWVDAEVGKTEN 625
++ + FK++ + +AW+DA + + E+
Sbjct: 649 LAEIQFKEVSEGNSLAWIDARIQEKES 675
>gi|19112240|ref|NP_595448.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582548|sp|O74740.1|CFT2_SCHPO RecName: Full=Cleavage factor two protein 2
gi|3738153|emb|CAA21254.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe]
Length = 797
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 252/800 (31%), Positives = 396/800 (49%), Gaps = 133/800 (16%)
Query: 23 VSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL-S 81
+ +DG + ID G +D SL P +V D +LLSH D H+G L YA + +
Sbjct: 18 IELDGIHIYIDPGSDD----SLKHP--EVPEQPDLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 APVFSTEPVYRLGLLTMYD----QYLSRRS----------VTRLTYSQNYHLSGKGEGIV 127
A +++T P +G +TM D Y+S S + L Y Q L GK G+
Sbjct: 72 AYIYATLPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGKCSGLT 131
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------VLESFVRPAVLI 180
+ + AGH LGGT+W + K+ E V+YAVD+N K+KHLNG +LE+ RP LI
Sbjct: 132 ITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLI 191
Query: 181 TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 238
TDA N+L + P R++R E F +++ +L GG VLLPVD+A RVLEL IL+++W+
Sbjct: 192 TDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
L +PI FL+ S+ TIDY KS +EWMGD+I + F + +N +++ + + S++ +
Sbjct: 252 PLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGIN-ENLLEFRNINTITDFSQISHI 310
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKN-LVLFTERG------------QFGTLAR 344
GPK++LA+ +LE GFS I ++ S+ N L+LFT+R ++ A
Sbjct: 311 GPGPKVILATALTLECGFSQRILLDLMSENSNDLILFTQRSRCPQNSLANQFIRYWERAS 370
Query: 345 MLQADPP-------PKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
+ D P +AVK+ + PL GEEL +Y+E + + ++A +L E
Sbjct: 371 KKKRDIPHPVGLYAEQAVKIKT--KEPLEGEELRSYQELEFSKRNKDAEDTAL---EFRN 425
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPH----------GGRYRDILIDGFVPPSTSV 447
++ ++ S D + N PH G + L D V +
Sbjct: 426 RTILDEDLSSSSSSEDDDLDLNTEV----PHVALGSSAFLMGKSFDLNLRDPAVQALHTK 481
Query: 448 APMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSA----SLILD 503
MFP+ E D++GE+I D+ + +E + + DD L + S I D
Sbjct: 482 YKMFPYIEKRRRIDEYGEIIKHQDFSMINEPANTLELENDSDDNALSNSNGKRKWSEIND 541
Query: 504 A------------KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
PSK++++E T++V C + FID EG DGRS+KTI+ V P +LVL+
Sbjct: 542 GLQQKKEEEDEDEVPSKIITDEKTIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLI 601
Query: 552 HGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
H S E E +K+ C L VY P E I+V+ D+ A+ ++L++ L+ N+++ K+G
Sbjct: 602 HASTEEKEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKNLIWTKVG 661
Query: 610 DYEIAWVDAEVGKTENGM---------------------------------LSLLPISTP 636
+ E++ + A+V ++ L+L
Sbjct: 662 NCEVSHMLAKVEISKPSEEEDKKEEVEKKDGDKERNEEKKEEKETLPVLNALTLRSDLAR 721
Query: 637 APPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ 695
AP +LVG++++A L+ L +GI E G G L CG V +RK+ GG
Sbjct: 722 APRAAPLLVGNIRLAYLRKALLDQGISAELKGEGVLLCGGAVAVRKLS-----GG----- 771
Query: 696 QIVIEGPLCEDYYKIRAYLY 715
+I +EG L +++IR +Y
Sbjct: 772 KISVEGSLSNRFFEIRKLVY 791
>gi|195145330|ref|XP_002013649.1| GL24248 [Drosophila persimilis]
gi|194102592|gb|EDW24635.1| GL24248 [Drosophila persimilis]
Length = 583
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 208/608 (34%), Positives = 325/608 (53%), Gaps = 67/608 (11%)
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVL 214
D RKE+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL
Sbjct: 1 DSTTRKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVL 60
Query: 215 LPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
+ D+AGR+LEL +L+ W + Y + L VS + +++ KS +EWM D +TK+
Sbjct: 61 IAADTAGRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLTKA 120
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
FE +R+N F KH+ L +++ P GPK+VLAS LE+GF+ D+F++WAS+ N +
Sbjct: 121 FEGARNNPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWASNANNSI 180
Query: 332 LFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASL 390
+ T R GTLA +++ P + +++ + RRV L G EL Y +T+ +K L A
Sbjct: 181 ILTTRTSPGTLAMELVENYAPGRQIELDVRRRVELEGAELEEYL--RTQGEKINPLIAKP 238
Query: 391 VKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPM 450
EEES + D I+ + D+V GR+ GF + M
Sbjct: 239 EPEEESSSESEDD---------IEMSVITGKHDIVVRPEGRHHS----GFFKSNKRHHVM 285
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKD-------------EDMDQAAMHIGGDDGKLDEGS 497
FP++E ++D++GE+IN DDY I D E++ + IG +
Sbjct: 286 FPYHEEKIKYDEYGEIINLDDYRIADMNNTEFPPEEQNKENVKKEEPGIGIEQQANGAMD 345
Query: 498 ASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA 557
+ L KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG+ E
Sbjct: 346 TDVQLLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTEEG 405
Query: 558 TEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVD 617
T+ + +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 406 TQVVAKHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVD 465
Query: 618 AEVG----------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLK 654
+G E L+L + P H SVL+ +LK++D K
Sbjct: 466 GRLGMRLKAIDAPPTAMDVTVEQDAAMQEGKTLTLETLEEDEIPVHNSVLINELKLSDFK 525
Query: 655 PFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 713
L I EF+GG L C + +R+V ++ +EG L E+YYKIR
Sbjct: 526 QILLRNNINSEFSGGVLWCTNGTLALRRVDAG----------KVAMEGCLSEEYYKIREL 575
Query: 714 LYSQFYLL 721
LY Q+ ++
Sbjct: 576 LYEQYAIV 583
>gi|350587145|ref|XP_001926907.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sus scrofa]
Length = 438
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/383 (43%), Positives = 240/383 (62%), Gaps = 24/383 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR G+VL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGSVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMS 360
GTLAR L +P K ++ S
Sbjct: 360 TPGTLARFLIDNPSEKITEIESS 382
>gi|395827898|ref|XP_003787126.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Otolemur garnettii]
Length = 750
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/390 (42%), Positives = 240/390 (61%), Gaps = 25/390 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS + + + + R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVCFTCNKEV-CYXDKRN 299
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 300 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 358
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVG 367
GTLAR L +P K ++ + +RV L G
Sbjct: 359 TPGTLARFLIDNPSEKITEIELRKRVKLEG 388
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 78/345 (22%)
Query: 440 FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEG 496
F + PMFP E +WD++GE+I P+D+++ + + +++ + G +G DE
Sbjct: 421 FFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG--DEP 478
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
+ D P+K +S ++++K + +IDYEGR+DG SIK I++ + G E
Sbjct: 479 MNQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKXXXXXXXXGPPE 537
Query: 557 ATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
A++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E
Sbjct: 538 ASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAE 595
Query: 613 IAWVDA----EVGKTENGML---------------------------------------- 628
+AW+D V K + G++
Sbjct: 596 LAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDE 655
Query: 629 -------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEY 676
++P P PP H+SV + + +++D K L +GIQ EF GG L C
Sbjct: 656 KETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQ 715
Query: 677 VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 716 VAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 750
>gi|393241063|gb|EJD48587.1| hypothetical protein AURDEDRAFT_183466 [Auricularia delicata
TFB-10046 SS5]
Length = 893
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 257/887 (28%), Positives = 408/887 (45%), Gaps = 178/887 (20%)
Query: 5 VQVTPLSGVFNE---NPLSYLVSIDGFNFLIDCG---WNDHFDPS--------LLQPLSK 50
+ TPLSG +E NPL+YL+ +D L+DCG WN F Q L
Sbjct: 2 ITFTPLSGDAHESNGNPLAYLLQVDDVKILLDCGSPDWNPEFIDEDGDAPWTPYCQALRS 61
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ--------- 101
A +ID VLLSH D H G PYA L AP + T P+ +G + + D+
Sbjct: 62 FAHSIDLVLLSHGDLQHCGLYPYAFAHWNLRAPAYCTYPIQAMGRVAVLDELEALRAEQS 121
Query: 102 ------------------------------YLSRR--------SVTRLTYSQNYHLSGKG 123
Y+++R S+ + YSQ HL GK
Sbjct: 122 FAETDAANDADPPVDADGDAIMQSRASRSKYVAQRKDVQDAFDSLITMRYSQPTHLQGKC 181
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVL------------ 170
+G+ + P AGH LGGT+WKI ++YAVD N +E+HL+GTVL
Sbjct: 182 QGLTITPFSAGHTLGGTIWKIRSPSVGTIVYAVDMNHMRERHLDGTVLFRSAPGAGATIF 241
Query: 171 ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG-NVLLPVDSAGRVLELLL 228
E RP VLITDA L R+ R+ + +S TL ++L+P DS+ RVLELL+
Sbjct: 242 EPLARPDVLITDADKTLVVNARRKDRDAALLELVSDTLGTRSHSLLMPCDSSTRVLELLV 301
Query: 229 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK--------------SFET 274
+ + +W+ + PI ++ + + +V+S +EW+G +I+K + +
Sbjct: 302 LFDQHWSFSKMRAPICLVSRTGAEMLTFVRSMMEWLGGTISKEDVGEKPDNNNKGGNRKR 361
Query: 275 SRDN---------AFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEW 323
RD+ A +H+ ++L + PKL+LA ++ G S IF ++
Sbjct: 362 KRDDEEEDAIGAFALRFRHLEFFTTYAQLTSTYPSSKPKLILAVPQNISHGSSRAIFTDF 421
Query: 324 ASDVKNLVLFTERGQFGTLARML-------QADPPP-------------KAVKVTMSRRV 363
AS V N+V+ T +G+ GTL+RML Q D + +K+ M +V
Sbjct: 422 ASVVGNVVVLTSKGEQGTLSRMLFDKWNEAQRDGDQYGAGTVGEPVTLNETLKLRMHTKV 481
Query: 364 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG------------PDNNLSGDPM 411
PL G EL + + + ++ EA +A+ + + +A PD++ G P
Sbjct: 482 PLQGAELETHLQAERAAQEREAKQAAALARAQLEAEADDEESDSDESQSEPDDDGDGKPA 541
Query: 412 --VIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP----------MFPFYENNSE 459
+ DA + ++ D + + + DI + G V TS MFP+ E
Sbjct: 542 EPLRDAWHFDSGGDTADANRISF-DIYMKGSVARPTSFFKATEGQTQRFKMFPYVERRRR 600
Query: 460 WDDFGEVINPDDYIIKDEDMDQAAMH---IGGDDGKLDEGSASLILDAKPSKVVSNELTV 516
D FGEV++ ++ K + ++ A + K E A PSK V+ E V
Sbjct: 601 VDAFGEVVDVAMWLRKGKALETGAESEEALEAKRKKAAEEEAKKAQAEPPSKFVTTEAEV 660
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVY 574
Q+ C L F+D EG D R++KTI+ V P K++LVH + AT LK+ C ++ + +Y
Sbjct: 661 QLACRLFFVDMEGLNDSRAVKTIVPQVNPRKMILVHSTTAATNALKESCSSIRAMTKDIY 720
Query: 575 TPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV-------------- 620
TP + +++ + + ++ + LSE+L++++ + D E+ +V +
Sbjct: 721 TPWLGDSVQIGEHINSFSLSLSEELLASIKMSRFEDTEVGYVAGRLVAHASSSIPVLEPL 780
Query: 621 --GKTENGMLSLLPISTP-----APPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALR 672
GKTE+G L + A +S ++GDLK+ LK L++ GI EFAG G L
Sbjct: 781 AGGKTEDGALQAAAPAARRQLGVAQLPQSTMIGDLKLTALKARLAAIGIPAEFAGEGVLV 840
Query: 673 CGEYVTIRKVGP---AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
CG++V P + G G ++VIEG +C+ YY IR +Y+
Sbjct: 841 CGDFVRDPDADPNAVVAVRKMGRG--KVVIEGGVCDVYYTIRREVYA 885
>gi|353237084|emb|CCA69065.1| hypothetical protein PIIN_02923 [Piriformospora indica DSM 11827]
Length = 887
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 260/887 (29%), Positives = 407/887 (45%), Gaps = 186/887 (20%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWND-HFDPSL-------------LQP 47
V TPL+G + PL+YL+ IDG L+DCG D H D L
Sbjct: 2 VSFTPLAGGAHSASTIPLAYLLDIDGAKILLDCGSPDWHLDDDLKVGEEQKQIFESYCAQ 61
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR- 106
L +++ ID VLLSH D H G YA + GL+A ++T PV L ++ ++ R
Sbjct: 62 LQRISPDIDLVLLSHGDLAHAGLYAYANARWGLTATAYATLPVQATARLATLEESITLRG 121
Query: 107 -------------------------------------------SVTRLTYSQNYHLSGKG 123
S+ L YSQ L+GK
Sbjct: 122 EEQIDSDPQPTPETDGMEITPAEEKKRTKIRVAKPQEINDAFQSIITLRYSQPTQLAGKC 181
Query: 124 EGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVL---------ESF 173
+GI + P AGH +GGT+WKI ++YAV+ N KE+HL+G+VL E
Sbjct: 182 QGITITPFSAGHTIGGTIWKIRSSLAGTIVYAVNLNHLKERHLDGSVLTLSTGGNVFEPL 241
Query: 174 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
RP VLITDA AL R+ R+ D I++T+ +G ++LLPVDS+ R+LELL++ +
Sbjct: 242 ARPEVLITDAERALTIGSKRKDRDRALLDLITETIESGHSLLLPVDSSTRLLELLVLTDQ 301
Query: 233 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT--------KSFETSRDN------ 278
+WA + PI ++ S + V++ +EW+G +I+ K+ RD
Sbjct: 302 HWAYSKMRAPICLISKTSRQLLSMVRNMMEWLGGTISKEDLGDSAKNQRRRRDEDDEALG 361
Query: 279 --AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
A K V N E+ N + PKL+L+ ASL G S +F ++A + N+V+ T
Sbjct: 362 ALALRFKFVEFFSNPDEMINIFSSREPKLILSVPASLSHGPSRSLFADFAVNEGNMVVLT 421
Query: 335 ERGQFGTLARML-------QADPPP-----KAVKVTMSR--------RVPLVGEELIAY- 373
+R GTL R L Q D V V++ R +VPL G EL Y
Sbjct: 422 QRTGMGTLNRFLLDRWEAGQEDSQRWQDGHIGVPVSLDRPIDMELRIKVPLQGVELEEYR 481
Query: 374 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG--- 430
E+E+ ++ A KA+ ++++ + + D + + +A+V E G
Sbjct: 482 EKEKLAKEQANAKKAAAARQQQMREEEVESSGSESDDSDDSDSGEDVTAEVTEEMEGVDW 541
Query: 431 ----------RYR--DILIDG-------FVPPSTSVAP---MFPFYENNSEWDDFGEVIN 468
RY+ DI + G F + + P +FPF E DDFGEVI+
Sbjct: 542 TILDQEEVGLRYQSYDIYVKGHQNKTSNFFKSNDASVPRFRVFPFIEKRKRVDDFGEVID 601
Query: 469 PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLIL--DAKPSKVVSNELTVQVKCLLIFID 526
++ K + MDQ A +L + + PSK ++ ++++ ++C ++F+D
Sbjct: 602 VSSWLRKGKIMDQNAESEQSKANRLKAAAKEKEQQPEEAPSKFIAEQISIDMRCKVMFVD 661
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDV 584
EG DGR++K IL V P +L++V ++EATE L + C +K + +YTP++ ETI +
Sbjct: 662 LEGVHDGRALKNILPQVNPRRLIIVQATSEATESLAEACKAIKSMSAEIYTPRVGETIRI 721
Query: 585 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV--------------------------DA 618
++ Y + LS+ LM+++ D EIA+V D
Sbjct: 722 GENMENYTIALSDALMNSLKMATYEDNEIAFVRGRLSNPTSTGIYVLEPPRLGMQRTTDV 781
Query: 619 EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG--- 674
E+ + ENG+ + ST A +++++GDLK+ LK L+ GI EFAG G L C
Sbjct: 782 EMAEKENGVAAAKDSSTAAVIPRAIMIGDLKLTALKIRLNRLGIAAEFAGEGFLVCRSKP 841
Query: 675 ------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
+ V +RK +KG ++ +EG +Y +R +Y
Sbjct: 842 IDDDEEDTVAVRKT----RKG------EVRVEGDASPLFYMVREEIY 878
>gi|357440001|ref|XP_003590278.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479326|gb|AES60529.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 196
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/200 (77%), Positives = 169/200 (84%), Gaps = 7/200 (3%)
Query: 525 IDYEGRADGRSIKTILSHVAPLKLV---LVHGSAEATEHLKQHCLKHVCPHVYTPQIEET 581
+D+EGR+DGRSIK ILSHVAPLKLV LV ++ L K VCPHVY PQIEET
Sbjct: 1 MDFEGRSDGRSIKNILSHVAPLKLVWIFLVFFNSINRAALS----KDVCPHVYAPQIEET 56
Query: 582 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHK 641
IDVTSDLCAYKVQLSEKLMS+VLFKKLG+YE+AWVDAE GKTEN MLSLLP+S PHK
Sbjct: 57 IDVTSDLCAYKVQLSEKLMSSVLFKKLGEYEVAWVDAEAGKTENDMLSLLPVSGAPHPHK 116
Query: 642 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
SVLVGDLK+AD K FLS+KG+ VEFAGGALRCGEYVT+RKVG A QKG GSGTQQI+IEG
Sbjct: 117 SVLVGDLKLADFKQFLSTKGVPVEFAGGALRCGEYVTVRKVGDATQKGAGSGTQQIIIEG 176
Query: 702 PLCEDYYKIRAYLYSQFYLL 721
PLCEDYYKIR YLYSQFYLL
Sbjct: 177 PLCEDYYKIRDYLYSQFYLL 196
>gi|169861678|ref|XP_001837473.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
gi|116501494|gb|EAU84389.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
Length = 926
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 261/934 (27%), Positives = 408/934 (43%), Gaps = 229/934 (24%)
Query: 5 VQVTPLSGVFNE---NPLSYLVSIDGFNFLIDCGWNDHF-DPSLLQ-------------- 46
+ TPL+G PLSY++ +D L+DCG D +PS Q
Sbjct: 2 ITFTPLAGSAKSKSTTPLSYVLQVDDVRILLDCGSPDWVQEPSPFQDGADMEDDSNVKST 61
Query: 47 ---------PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL- 96
+ KVA TID VLLSH D H G P+A + GL+AP ++T PV +G +
Sbjct: 62 SPPWQAYCEAMKKVAPTIDLVLLSHGDLAHCGLYPWAYSRWGLTAPAYTTLPVQAMGRIA 121
Query: 97 ---------------------------------------------------TMYDQYLSR 105
T+ + + +
Sbjct: 122 VTEDIEGIRGEIEVDIEEPVEEDAQKQDGGLEVEEQEKALPTMGAKGMCVATLIEVHNAF 181
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKH 164
S+ L YSQ HL GK +G+ + P AGH +GGT+WKI + ++YAV+ N KE+H
Sbjct: 182 DSINTLRYSQPIHLQGKCQGLTITPFNAGHSIGGTIWKIRSPSSGTILYAVNLNHMKERH 241
Query: 165 LNGTVL----------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
L+GTV+ ES VRP +LITDA A R+ R+ D I+ TL + ++
Sbjct: 242 LDGTVMMVRPGGSGVFESLVRPDLLITDAERASVITSRRKDRDAALIDTITATLTSRSSL 301
Query: 214 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-- 271
LLP DS+ R+LELL++L+ +W L YPI L+ + +V+S +EW+G +I+K
Sbjct: 302 LLPCDSSTRILELLVLLDQHWNYSRLTYPICLLSRTGREMLTFVRSMMEWLGGTISKEDV 361
Query: 272 ----------FETSRDN-----------AFLLKHVTLLINKSEL--DNAPDGPKLVLASM 308
+ RD+ A KH+ N L ++ PKL+LA
Sbjct: 362 GEEGNKRQDRNKRRRDDEDGVEEALGALALRFKHLEFFPNPQALLQRHSSKDPKLILAVP 421
Query: 309 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP--------- 351
ASL G S +F ++A+ N+VL T RG GTL R L + D
Sbjct: 422 ASLSHGPSRQLFADFAAVPDNVVLLTTRGAEGTLGRALFDKWNNSQRGDDKWDKGRIGRN 481
Query: 352 ---PKAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEE------------ 395
A+K+ M +VPL G EL Y +E+ +KE A +A++ + +
Sbjct: 482 VMMDGAIKIKMYHKVPLQGAELEEYLAKERAAKEKEAAQQAAMARNQRMLEADEDDSDSE 541
Query: 396 ------SKASLGPDNNLSGDPMVIDANN---------ANASADVVEPHGGRYR-----DI 435
+ L GD V +A N ++ AD + G + DI
Sbjct: 542 SDSDSDADDEEEVREALGGDMDVDEAGNRRRRRGMKKSSDGADWGDGDEGYTKQLLSFDI 601
Query: 436 LIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH 485
+ G V STS MFP+ E D++GE ++ ++ K + +++ A
Sbjct: 602 YLKGKVSKSTSFFKSVGGQTQRFRMFPYVEKKRRVDEYGETVDVGLWLRKGKALEEEAEK 661
Query: 486 IGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 545
+ I + PSK V++E+ VQ+ C L+FID EG DGR++KTI+ V P
Sbjct: 662 KEKMEEGATIEEEDKIAEP-PSKYVTSEVEVQLACRLLFIDMEGLNDGRAVKTIVPQVNP 720
Query: 546 LKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV 603
++++VH S EAT L + C +K + + P + E+I + + + + +S+++++++
Sbjct: 721 RRMIVVHASEEATNALIESCGSIKAMTKDILAPVVNESIQIGQQINNFSISISDEMLASL 780
Query: 604 LFKKLGDYEIAWVDAEVGKTENGMLSLL-PISTPAP------------------------ 638
+ D EI +V V N ++ +L P S+ P
Sbjct: 781 RMSRFEDNEIGYVRGRVVMHSNSIIPILEPASSAFPSSQTPTTKQVLNKRKLGSRPQVAL 840
Query: 639 PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG----------EYVTIRKVGPAGQ 687
PH S ++G+LK+ LK L+ GIQ E G G L CG E V +RKV
Sbjct: 841 PH-STMIGELKLTALKARLAKVGIQAELVGEGVLICGAGVGSLDNLAETVAVRKV----- 894
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ ++ +EG + + YY +R +Y L+
Sbjct: 895 -----ASGRVELEGNVSDVYYTVRKEIYQLHALV 923
>gi|67968123|dbj|BAE00542.1| unnamed protein product [Macaca fascicularis]
Length = 592
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 192/624 (30%), Positives = 316/624 (50%), Gaps = 112/624 (17%)
Query: 175 RPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+AGRVLEL +L+
Sbjct: 4 RPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQI 63
Query: 234 WAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
W +Y L VS + +++ KS +EWM D + + FE R+N F +H++L
Sbjct: 64 WRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHG 123
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S+L P PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P
Sbjct: 124 LSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 182
Query: 351 PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDP 410
K ++ + +RV L G+EL Y E++ K+ S +
Sbjct: 183 SEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEA 225
Query: 411 MVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDD 462
+ ++ ++ D+ +P + + D+++ G F + PMFP E +WD+
Sbjct: 226 DIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDE 285
Query: 463 FGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ 517
+GE+I P+D+++ +E+ + + D +D+ + + P+K +S +++
Sbjct: 286 YGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIE 340
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHV 573
+K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K + V
Sbjct: 341 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KV 398
Query: 574 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML- 628
Y P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 399 YMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVIL 458
Query: 629 ----------------------------------------------SLLPISTPAPP--- 639
++P P PP
Sbjct: 459 EEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEV 518
Query: 640 --HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T +I
Sbjct: 519 PGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRI 568
Query: 698 VIEGPLCEDYYKIRAYLYSQFYLL 721
+EG LC+D+Y+IR LY Q+ ++
Sbjct: 569 GLEGCLCQDFYRIRDLLYEQYAIV 592
>gi|260822471|ref|XP_002606625.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
gi|229291969|gb|EEN62635.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
Length = 607
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 208/630 (33%), Positives = 319/630 (50%), Gaps = 95/630 (15%)
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
+LN L +R L++ +Y + + E I T+R GNVL+ +D+AGRV
Sbjct: 1 YLNYVQLRRKLRDEQLLSKSYLNYVQLRRKLRDEQLLTEIFNTVRDDGNVLVSIDTAGRV 60
Query: 224 LELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
LEL +LE YW AE L Y + L V+ + +++ KS +EWM D I + FE +R+N F
Sbjct: 61 LELSQLLEQYWQNAETGLQAYNLCLLNNVAYNVVEFAKSQVEWMSDKIMRVFEDNRNNPF 120
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ L + SEL PD PK+VLAS+ LE+GFS ++FV+W + KN V+ T R G
Sbjct: 121 QFKHLKLCHSLSELHKVPD-PKVVLASVPDLESGFSRELFVQWCQNQKNTVVLTSRPGPG 179
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TL RML +P K + +RV L G EL Y +E+ + K+E+ + S K +ES
Sbjct: 180 TLGRMLIDNPKMKTFTLQARKRVRLEGPELEEYLQEEKKEKEEKKRRESKAKGDES---- 235
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPH-------GGRYRDILIDGFVPPSTSVAPMFPF 453
D + S D M ++ ++ V H GGR GF + PMFP
Sbjct: 236 --DTSESEDEMEVEGSSFPGGVKGVAKHDLMMQAEGGRK-----GGFFKQAKKAYPMFPA 288
Query: 454 YENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 513
E +WDD+GE+I P+DY++ + + + E A + D P+K + E
Sbjct: 289 PEERVKWDDYGEIIKPEDYMVVEMTQAEEEKAKAEGEAAAQEEFAEELTDV-PTKSIVQE 347
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK---HVC 570
LT+ +KC +++ID+EGR+DG S+K IL+ + P +LV+VHG++E+T L + C V
Sbjct: 348 LTLDIKCRVVYIDFEGRSDGESMKKILTQLKPRQLVIVHGNSESTLLLAEVCRSTAGMVQ 407
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVD------------- 617
V+TP++ ET+D T + Y+V+L + L+S++ F K D E+AWVD
Sbjct: 408 EKVFTPRLNETVDATMESHIYQVKLKDSLVSSLQFYKARDTELAWVDGQLDLTTPTTDTS 467
Query: 618 -----AEVGKTE------------------NGMLSLLPISTPA----------------- 637
EV + E +G L LP + +
Sbjct: 468 ALLEEGEVQEMEDLEEEQFFKARDTELAWVDGPLLTLPFTCKSAKAAAEESRETVPTLEA 527
Query: 638 ------PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGG 691
P H++V + +++D+K L +GIQ EF+GG L C V +++
Sbjct: 528 LPISQIPGHEAVFINKPRLSDIKQVLQKEGIQAEFSGGVLICNNVVALKR--------NE 579
Query: 692 SGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
SG +I +EG +CEDYYK+R LY Q+ ++
Sbjct: 580 SG--RIGMEGCICEDYYKVRKLLYEQYAIV 607
>gi|392593024|gb|EIW82350.1| hypothetical protein CONPUDRAFT_54247 [Coniophora puteana
RWD-64-598 SS2]
Length = 926
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 260/933 (27%), Positives = 408/933 (43%), Gaps = 238/933 (25%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL-------------- 44
+ TPLSG + PL+YL+ ID L+DCG WN PS
Sbjct: 2 ITFTPLSGAARSSVTSPLAYLLQIDDVKILLDCGSPDWNPEKIPSTSTESDSSPYFWQDY 61
Query: 45 LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG---------- 94
L + A ++D VLLSH D H G YA + GL APV+ST PV +G
Sbjct: 62 CNALKQCAPSVDLVLLSHGDLSHCGLFAYAYSRWGLKAPVYSTLPVQAMGRIATTEDVDG 121
Query: 95 -----------------------------------------LLTMYDQYLSRRSVTRLTY 113
+ TM + + + S+ L Y
Sbjct: 122 LRDEGIHDPENEQDFDEEHKEENENEEGFSTEQKEHTSIKFIATMQEVHEAFDSINTLRY 181
Query: 114 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-- 170
SQ HL G+ +GI V P AGH LGGT+WKI + ++YAV+ N +E+HL+GT+L
Sbjct: 182 SQPTHLQGRCQGITVTPFNAGHTLGGTIWKIRSPSAGTILYAVNINHMRERHLDGTILVR 241
Query: 171 -------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 222
E RP +LITDA A R+ R+ D IS TL + ++LLP DS+ R
Sbjct: 242 SAGGGVFEQLARPDLLITDADRANVVTSRRKDRDAALMDCISATLSSRSSLLLPCDSSTR 301
Query: 223 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS----------- 271
VLELL++L+ +W H YPI FL+ + +V+S +EW+G ++ K
Sbjct: 302 VLELLVLLDQHWKFHDYRYPICFLSRNGREMLTFVRSMMEWLGGTVNKEDVGVDGSGRMG 361
Query: 272 ---------FETSRDNAFLLK--HVTLLINKSEL--DNAPDGPKLVLASMASLEAGFSHD 318
+ AF L+ H+ N L + PK++LA ASL G S
Sbjct: 362 GNKRRRDDDADDDALGAFALRFPHLEFFPNPDALLQTYSSKDPKIILAVPASLSHGPSRS 421
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------PKAVKVT 358
+FV++A+ N+VL T RG+ GTL ++L +AD A+++
Sbjct: 422 LFVDFAAVPDNVVLLTGRGEEGTLGQILFGRWNDSQRADDKWDKGKIGRNVMMDGAMRLK 481
Query: 359 MSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 417
MS +VPL G EL Y +E+ +KE A +A++ + + + +++ D +
Sbjct: 482 MSSKVPLQGTELELYLAKERATKEKEVAQQAAMARNQRMLEADEDESDEESDSDAEEDEV 541
Query: 418 ANA-------SADVVEPH-GGRYR------------------------DILIDGFVPPST 445
A A S D+ P+ G R R DI + G + +T
Sbjct: 542 ARALGVTTLDSDDISSPNLGLRKRKGESAEDGEWADMDEGLTKQVLSFDIYLKGNMSKAT 601
Query: 446 SVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK--- 492
S MFP+ E D++GE I+ ++ K + M++ + GD+ K
Sbjct: 602 SFFKTSSNQSQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVMEEDSQ---GDEAKDVK 658
Query: 493 ----LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 548
+E P K V++E+ VQ+ C L+FID +G DGRS+KTI+ + P K+
Sbjct: 659 RRQAEEEEKFQKAAQEPPYKFVTSEIEVQLACRLLFIDMQGLNDGRSVKTIIPQMNPRKM 718
Query: 549 VLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 606
++VH S A+E L C + + +Y PQ+ +++ + ++ + LS++L++ +
Sbjct: 719 IIVHASESASEALISSCANIHAMTKDIYAPQVGDSVQIGQQTNSFSISLSDELIAGLKMS 778
Query: 607 KLGDYEIAWVDAEVGKTENGMLSLLPISTPA-----------------PPHK-------- 641
+ D E+A+V G+ + S +PI PA PP +
Sbjct: 779 RFEDNEVAYV---TGRVISHFSSTIPILGPAYAVPPARQSSVVSENVEPPKRRTLGSRSK 835
Query: 642 -----SVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-------------EYVTIRKV 682
S ++G+LK+ LK L++ GI E G G L CG + V +RK
Sbjct: 836 IDLPHSTMIGELKLTSLKSRLAAVGIHAELIGEGVLICGAGAKRDQASQNLHDTVAVRK- 894
Query: 683 GPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
+ + ++ +EG + + YY +R +Y
Sbjct: 895 ---------TTSGKVELEGNVSDVYYNVRNEIY 918
>gi|301092283|ref|XP_002997000.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112189|gb|EEY70241.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 513
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/540 (33%), Positives = 290/540 (53%), Gaps = 51/540 (9%)
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 262
I KT+R GGNVL+P DS+GRVLEL+ +L+ YW ++ L PI L +S T ++ LE
Sbjct: 4 ILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAQAMLE 63
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
W D I K+F+ R N F H+ L+ ELD P+ PK+VLA+ SLE GF+ DIF+
Sbjct: 64 WCNDRIAKNFDVGRQNPFQFTHIHLVHTLEELDALPN-PKVVLATSPSLECGFAKDIFIR 122
Query: 323 WASDVKNLVLF---TERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYE-EEQ 377
WA D +N ++F T F + L DP K + T++++V L G EL YE +E+
Sbjct: 123 WAPDPRNSIIFSSTTSETSFASRVVKLSKDPSAEKNISCTVTQKVFLEGAELALYEVKER 182
Query: 378 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 437
RL+ E KA ++E + + M I+ + + + P + R
Sbjct: 183 KRLRTEAENKAKEIEEAAMEDMM----------MGIEDFESESEEEETTPQEVQLRGTFK 232
Query: 438 DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM---DQAAMHIGGD---DG 491
G ++ PMF E+ +EWD++GE+INPDD+ KD + QA +I D D
Sbjct: 233 VGLGQFASVRYPMFFAVESKTEWDEYGEIINPDDF--KDATLLANRQARRNIIEDADGDE 290
Query: 492 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
++ + ++ +P+K ++NE+ V + + +D++G ADGR+I+ L +V P KL+LV
Sbjct: 291 DMENANQEAAVETRPTKTITNEVVVNIAARITQVDFDGIADGRAIRNCLGNVKPRKLILV 350
Query: 552 HGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
HG+ + T LKQ + C V+TP + E ID+ SD YK+ + E L ++ +G
Sbjct: 351 HGTEKTTSELKQFVESSIPMCEAVFTPDVMECIDIESDTNVYKLSVKESLYTSA----VG 406
Query: 610 DYEIAWVDAEVGKTENGMLSLLPISTP------APPHKSVLVGD--LKMADLKPFLSSKG 661
+E+++V ++ +EN S +P+ P H+ +L+ D +K+ +K L G
Sbjct: 407 SHEVSYVTGQLVLSEN---SSVPVLQPLNENGGQATHEPILLSDGKMKLDVMKQVLGKAG 463
Query: 662 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
Q +F GG L C + V +++ + +IV+EG L +YY+IRA LY QF L+
Sbjct: 464 FQAKFRGGMLVCNDGVVLKR----------AMNNEIVMEGTLSRNYYRIRALLYEQFTLV 513
>gi|412994069|emb|CCO14580.1| predicted protein [Bathycoccus prasinos]
Length = 1092
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 265/946 (28%), Positives = 414/946 (43%), Gaps = 237/946 (25%)
Query: 2 GTSVQVTPLSGVFNEN------------PLSYLVSIDGFNFLIDCGWNDHFDPS-LLQPL 48
G V +TPL G E+ PL YL+ ID N L+DCGW+D FD + ++ L
Sbjct: 158 GNKVALTPLLGGIREDDGARGGTTTTTEPLCYLLQIDQANILLDCGWDDRFDQTEYVKEL 217
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP---VFSTEPVYRLGLLTMYD----- 100
K+A T+D VL+SH H+GA+P + P ++++ P ++LG + YD
Sbjct: 218 EKIAPTLDCVLISHCTQRHVGAVPLLFSERVKCNPNCKIYASIPTHKLGQMLCYDIALGY 277
Query: 101 ------------------------------QYLSRRSVTRLT------YSQNYHLSGKGE 124
Q SR SV R + + + K
Sbjct: 278 SEFRGEFGEDVGYSLDDVDLAFSKFVPVKYQQHSRVSVRRESAGGGGGGESDAGTNSKNS 337
Query: 125 G------IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPA 177
G IVV AGH LGG+ W+I+KD ED++YAVDYN RKE+HL GT L E+ RP+
Sbjct: 338 GGATNSDIVVEAINAGHTLGGSCWRISKDAEDIVYAVDYNMRKERHLAGTSLAETVHRPS 397
Query: 178 VLITDAYNALHNQPPR--QQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
VLITD N P Q R++ D + K R GNV++ D+ GR LEL L+LE+ W
Sbjct: 398 VLITDCRNVDRKAPESRLQVRDLPLVDCVLKHARMEGNVVICCDAVGRTLELALLLEETW 457
Query: 235 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
+L +Y + V+++ +++ +S LEWM + + F+++R N F +K + + +
Sbjct: 458 KNQNLGSYQLVLFNNVAANALEFARSHLEWMNEDVGLKFDSTRQNVFDVKRLFPCHSYED 517
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF-TERGQFGTLARMLQADPPP 352
P GPK+VLAS+ASLE GF+ +FVEWASD KN ++ E G+ LAR +
Sbjct: 518 FTRLPPGPKVVLASLASLEGGFARKLFVEWASDAKNCFIWPDEIGRQVGLAREIVEKCSK 577
Query: 353 KA--------------VKVTMSRRVPLVGEELIAYEEEQTR---------------LKKE 383
+KV ++RR L G+EL A+E EQ L +E
Sbjct: 578 GGAKTTSSKTKKKDVIMKVELARRELLSGKELEAWEHEQEEKRLEAEKRREEEAKRLAEE 637
Query: 384 EALKASLVKEEESKASL----GPDNNLSGDPMVIDANNANASADVVEP------------ 427
E K L +E + A+ D N+ G+ A +V P
Sbjct: 638 EEKKRMLEEEMDVDAATLSQPVEDENIYGEKKAGVAEEEEKVERLVPPPQVNEETGIALR 697
Query: 428 ---HGGRYRDILIDGFVPPS---------TSVAPMFPFYENNSEWDDFGEVINPDDY--- 472
R+ ++DGF+P S T ++ S ++GE I+ D +
Sbjct: 698 DKQMSFERRECIVDGFIPESFEHLVFPDETKLSSSSSDPSGMSAKTEYGEAIDADAFFRV 757
Query: 473 -------IIKDE------DMDQAAMHIG------GDDGKLDEGSASLILDAK-------- 505
+ +D+ D+D+ A G G KL + +DA
Sbjct: 758 ANELRPEMTRDQSFESTGDVDKLAGVDGIMDATMGIAAKLTNKQPDMDIDANAGKEEKAL 817
Query: 506 ------PSKVVSNELTVQVKCLL-IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 558
P+KVV + VK + DY+G ADGRS+K I+ + P +++LV G+ +
Sbjct: 818 ERPVGIPTKVVKETKEIVVKAAIESNFDYDGLADGRSVKAIIPRLEPRRVILVSGTVKDA 877
Query: 559 EHLKQHCLKHVCPH------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
E L H L + H + P+ ET+D +S YKV+LSE ++S+ +++ Y
Sbjct: 878 EKLASH-LYNDSEHFPKSSKIDYPKNNETLDASSVHPTYKVRLSEAVLSSARLRQVSGYA 936
Query: 613 IAWVDAEVGKT-ENGML-SLLPISTPA---------------------------PPHKSV 643
+ W+D +G E+G LLP+ A P +
Sbjct: 937 VGWIDGVIGPIPEDGSAPELLPVPVNALKLTVSKTVKDESLLAGKVTGPSLIKKEPTAAA 996
Query: 644 LV-------------------------GDLKMADLKPFLSSKGIQVEFA-GGALRC--GE 675
LV GD+++++ + +L G+ EF GGAL C G+
Sbjct: 997 LVVEDNEENEGTEINIVTKHHRRSAFVGDVRLSEFRRYLQRMGVPAEFGEGGALVCANGQ 1056
Query: 676 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V R+ + ++++EG + + Y+ +R LY+Q+ ++
Sbjct: 1057 VVVRRR----------AEDDELIVEGSISDAYFNVRDMLYAQYSII 1092
>gi|339247939|ref|XP_003375603.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
gi|316971010|gb|EFV54853.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
Length = 1188
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 260/438 (59%), Gaps = 42/438 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSGV +++P Y++ + F+F++DCGW+ F+ ++ K A IDAVLL
Sbjct: 1 MTSLIRFEALSGVMDDSPPCYVLEVGEFHFMLDCGWDSSFNMDFIERAQKWAPRIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
S+PD H+GALPY + + GLS P+++T PVYR+G + +YD Y S ++
Sbjct: 61 SYPDIAHIGALPYLVGKCGLSCPIYATVPVYRMGQMFLYDWYQSFQNYEDFQIFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
V ++ Y+Q + G+G G+ + P AGH++GGT+W+ITK G E+++YAVD+N +K
Sbjct: 121 QVFDKVLQVKYNQQVSMKGRGHGLQIVPLPAGHMIGGTIWRITKMGEEEIVYAVDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG LES RP +LITDAY R+ R E I KTLR+GGNVL+ VD+A
Sbjct: 181 ERHLNGCPLESIARPNLLITDAYMCGTALLRRKFRDEALLSTILKTLRSGGNVLIVVDTA 240
Query: 221 GRVLELLLILEDYW--AEHS-LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL+ +L+ W AE L Y + F+ V+ + +++ KS +EWM + + + FE R
Sbjct: 241 GRVLELVQLLDQLWHNAEAGLLLYSLIFMNSVAFNVVEFAKSQVEWMSERMLRMFEEGRS 300
Query: 278 NAFLLKHVTLLINKSELD-----------NAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
N F +H L + +EL +A K+VLAS L++GFS ++F++W D
Sbjct: 301 NPFQFRHAQLCHSLAELTRLRSPKVLSFRDAFFSDKVVLASQPDLDSGFSRELFLDWCID 360
Query: 327 VKNLVLFTERGQFGTL-ARMLQADPPP-----KAVKVTMSRRVPLVGEELIA--YEEEQT 378
KN ++ T R + G+L +++++ P K + V + RR GE + A Y + +T
Sbjct: 361 AKNCIILTSRARIGSLCSKLIEMVSSPERIGTKQITVQVKRRFDDYGEVIHAKSYLQLET 420
Query: 379 RLKKEEALKASLVKEEES 396
+++ + ++ + +++E+
Sbjct: 421 KVRMVDLMRDRMGEDQEN 438
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 54/301 (17%)
Query: 459 EWDDFGEVINPDDYI-----IKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 513
+DD+GEVI+ Y+ ++ D+ + M ++G G I P+K +
Sbjct: 402 RFDDYGEVIHAKSYLQLETKVRMVDLMRDRMGEDQENGVTTPGEVQDI----PTKCIQFV 457
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--- 570
TV+V L FID+EGR D S+K IL P +++LVHG AE TE L +C K +
Sbjct: 458 QTVEVFAQLEFIDFEGRTDVDSLKKILQMSKPKQIILVHGMAEQTEKLANYCRKSLNMAE 517
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA------------ 618
V+TP++ + +D T + Y+++L++ L++++ F + D EIAWV+
Sbjct: 518 DKVFTPRLGDLVDATIESHMYQLKLTDALLNSLKFIHVKDVEIAWVNGLIKHNCSEEETE 577
Query: 619 -------------------EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSS 659
++G L LLP S+ P H +V VGD K++DLK L
Sbjct: 578 DQKIAAMDVDDEKNAENAVDIGSDNIPYLDLLP-SSEIPSHDAVFVGDPKLSDLKQALML 636
Query: 660 KGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFY 719
G Q EF+ G L ++IRK Q+ +EG +C+DYY IR ++ ++
Sbjct: 637 DGFQAEFSHGVLVVNNVLSIRKRADG----------QLHVEGIVCKDYYAIRDQFHANYF 686
Query: 720 L 720
Sbjct: 687 F 687
>gi|298708373|emb|CBJ48436.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 997
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 222/378 (58%), Gaps = 34/378 (8%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V TPL G P+S ++ + G L+DCGW+ HFD +LL+PL +V ID VL+
Sbjct: 127 VVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLI 186
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------------- 106
SHPD HLG LPYA +LG+ A V++T PV+++G + +YD Y+SR
Sbjct: 187 SHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVD 246
Query: 107 ----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE--DVIYAVDYNRR 160
L +SQ+ SG+G G+ + P+ AG ++G VW+++ E D++YA YN
Sbjct: 247 AAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNND 306
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALH-----NQPPRQQREMFQ----DAISKTLRAGG 211
E+HL + L + RP+VLITDA+NAL + P +R++ + + T+R GG
Sbjct: 307 HERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGG 366
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
NVLLP D+AGRVLELL++L DYW +H L +Y + L + +T ++ KS LEWM + I +
Sbjct: 367 NVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGR 426
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
+F+ R N F L++V ++ + ELD D PK+V+A+ SL+ GFS + + WAS N
Sbjct: 427 AFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANT 486
Query: 331 VLFTERGQFGTLARMLQA 348
+L T RG T AR L A
Sbjct: 487 ILLTGRGHGNTTARTLIA 504
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 37/154 (24%)
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
A P+K+ ++V C ++++D EG +DG S+K +AP L++ GS A L
Sbjct: 787 AVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVS 846
Query: 564 HCLKHV-------------------------------------CPHVYTPQIEETIDVTS 586
+ V C V + E + V
Sbjct: 847 YVRHAVEPAAAGRRARGGGRGGGGGRDSGGSEDDGEEEEEDVACRFVVVNKAMEPVPVAL 906
Query: 587 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 620
D A+ V L + L +++ +K+L +Y +A V+ V
Sbjct: 907 DSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRV 940
>gi|7243115|dbj|BAA92605.1| KIAA1367 protein [Homo sapiens]
Length = 579
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 186/614 (30%), Positives = 306/614 (49%), Gaps = 112/614 (18%)
Query: 185 NALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 243
NA + QP R+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +
Sbjct: 1 NATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGV 60
Query: 244 Y---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
Y L VS + +++ KS +EWM D + + FE R+N F +H++L S+L P
Sbjct: 61 YSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-S 119
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ +
Sbjct: 120 PKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELR 179
Query: 361 RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 420
+RV L G+EL Y E++ K+ S + + ++ ++
Sbjct: 180 KRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDI 222
Query: 421 SADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 472
D+ +P + + D+++ G F + PMFP E +WD++GE+I P+D+
Sbjct: 223 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 282
Query: 473 II-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 527
++ +E+ + + D +D+ + + P+K +S ++++K + +IDY
Sbjct: 283 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDY 337
Query: 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETID 583
EGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P++ ET+D
Sbjct: 338 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVD 395
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----------- 628
TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 396 ATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGE 455
Query: 629 ------------------------------------SLLPISTPAPP-----HKSVLVGD 647
++P P PP H+SV + +
Sbjct: 456 DSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNE 515
Query: 648 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 707
+++D K L +GIQ EF GG L C V +R+ + T +I +EG LC+D+
Sbjct: 516 PRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDF 565
Query: 708 YKIRAYLYSQFYLL 721
Y+IR LY Q+ ++
Sbjct: 566 YRIRDLLYEQYAIV 579
>gi|348689662|gb|EGZ29476.1| hypothetical protein PHYSODRAFT_552782 [Phytophthora sojae]
Length = 513
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 189/540 (35%), Positives = 288/540 (53%), Gaps = 51/540 (9%)
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 262
I KT+R GGNVL+P DS+GRVLEL+ +L+ YW ++ L PI L +S T ++ LE
Sbjct: 4 ILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAQAMLE 63
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
W D I K+F+ R N F H+ L+ ELD P PK+VLA+ SLE GF+ DIF+
Sbjct: 64 WCNDRIAKNFDVGRQNPFQFSHIHLVHTLEELDALP-SPKVVLATSPSLECGFAKDIFIR 122
Query: 323 WASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKV---TMSRRVPLVGEELIAYE-EEQ 377
WA D +N ++FT + A R+L+ P A KV T++++V L G EL YE +E+
Sbjct: 123 WAPDPRNSIIFTSTTPETSFASRVLKIAKDPSAAKVISCTVTKKVFLEGAELALYEVKER 182
Query: 378 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 437
RL+ E KA ++E + + M I+ + + + + R
Sbjct: 183 KRLRTEAENKAKEIEEAAMEDMM----------MGIEDFESESEEEETTQQEVQLRGTFK 232
Query: 438 DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM---DQAAMHIGGD-DGKL 493
G ++ PMF E EWD++GE+INPDD+ KD + QA +I D DG
Sbjct: 233 VGLGQFASVRYPMFFAVEPKIEWDEYGEIINPDDF--KDATLLANRQARRNIIEDADGDE 290
Query: 494 DEGSA--SLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
D SA + +P+K ++NE+TV + + +D++G ADGR+I+ L +V P KL+LV
Sbjct: 291 DMESADKEAAAETRPTKTITNEVTVSIAARITQVDFDGIADGRAIRNCLGNVKPRKLILV 350
Query: 552 HGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
HG+ T LK+ + C V+TP + E ID+ SD YK+ + E L ++ +G
Sbjct: 351 HGTETTTNELKKFVESSIPLCEAVFTPNVMECIDIESDTNVYKLSVKESLYTSA----VG 406
Query: 610 DYEIAWVDAEVGKTENGMLSLLPISTP------APPHKSVLVGD--LKMADLKPFLSSKG 661
+E+A+V ++ EN S +P+ P H+ +L+ D +K+ +K L G
Sbjct: 407 SHEVAYVTGQLALPEN---SSVPVLQPLNENGGQTTHEPILLSDGKMKLDVMKQVLGKAG 463
Query: 662 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
Q +F GG L C + V +++ + +IV+EG L +YY+IRA LY QF L+
Sbjct: 464 FQAKFRGGMLVCNDGVVLKR----------AMNNEIVMEGTLSRNYYRIRALLYEQFTLV 513
>gi|409079696|gb|EKM80057.1| hypothetical protein AGABI1DRAFT_72888 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198540|gb|EKV48466.1| hypothetical protein AGABI2DRAFT_220282 [Agaricus bisporus var.
bisporus H97]
Length = 919
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 258/920 (28%), Positives = 390/920 (42%), Gaps = 218/920 (23%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL-------------- 44
+ TPLSG + PLSYL+ +D L+DCG W D S
Sbjct: 2 ITFTPLSGAARSDSPSPLSYLLQVDDVRMLLDCGSPDWAPENDASTDGENESEEPRHSWS 61
Query: 45 --LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF----------------- 85
+ L ++A TID VLLSH D H G PYA + GL AP +
Sbjct: 62 DYCETLRRIAPTIDLVLLSHGDLSHSGLYPYAYSRWGLKAPAYSTLPVQATGKIAAMEDV 121
Query: 86 ----------------------------------STEPVYRLG--LLTMYDQYLSRRSVT 109
S P + G L T+ + + +
Sbjct: 122 EGIRDEQDIGDEPIQEAEHQELQSGEDAGVHKESSLNPTTKTGKFLATLVEVQDAFEYLN 181
Query: 110 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGT 168
L YSQ HL GK +GI + P AGH LGGT+WKI + +IYAV N KE+HL+GT
Sbjct: 182 TLRYSQPMHLQGKCQGITITPFNAGHTLGGTIWKIRSPTSGTIIYAVHMNHMKERHLDGT 241
Query: 169 VL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
VL E RP +LITDA A R+ R+ D I+ TL + ++LLP D
Sbjct: 242 VLMKNASGGIFEPLARPDLLITDADRANVITSRRKDRDAALIDTITATLSSRSSLLLPCD 301
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS---FETS 275
S+ R+LELL++L+ +W+ L YPI L + +V+S +EW+G +I+K E +
Sbjct: 302 SSTRILELLVLLDQHWSYSRLRYPICLLARTGRDMLAFVRSMMEWLGGTISKEDVGVEAT 361
Query: 276 RDN------------------AFLLKHVTLLINKSEL--DNAPDGPKLVLASMASLEAGF 315
A KH+ N L + PKL+LA ASL G
Sbjct: 362 AKQRNKRKRDDDDDNEALGALALRFKHLEFFPNPQALLQTYSSKDPKLILAVPASLSHGP 421
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------PKAV 355
S ++FV++A N+VL T RG+ G+L R L + D
Sbjct: 422 SRNLFVDFAVVPDNVVLLTGRGEEGSLGRALFNKWNDRQRVDDKWDKGKIGSNIMLDGGF 481
Query: 356 KVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES------------------ 396
++ M +VPL G EL AY ++E+ + KE A +A+L + +
Sbjct: 482 RMKMRSKVPLQGAELEAYLQQEKEKKDKEVAQQAALARSQRMLEADEDESDSDSDTDEEE 541
Query: 397 --KASLGPDNNLSGDPMV-------IDANNANASADVVEPHGGRYRDILIDGFVPPSTSV 447
+ +L D + GD + DA + AD DI + G V +TS
Sbjct: 542 EVRRTLEGDMEVDGDGISRRRKRDDTDATDWALDADEGLTKQFLSFDIYLKGNVSRATSF 601
Query: 448 AP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM--HIGGDDGKLDE 495
MFP+ E D++GE I+ ++ K +++ A I KL E
Sbjct: 602 FKTAGGQTQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGMVLEEEAESDEIKDYKKKLQE 661
Query: 496 GSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSA 555
+ + PSK V+ ++ VQ+ C L+F+D EG DGR++KTI+ + P K++LV S
Sbjct: 662 EEEAKKIKEPPSKFVTMDVDVQLACRLLFVDMEGLNDGRAVKTIVPQINPRKMILVSASE 721
Query: 556 EATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 613
A+ L + C ++ + +Y+P + E++ + + + +SE L++++ + D EI
Sbjct: 722 SASNALIESCSNIRAMTKDIYSPAVGESVQIGQQTNTFSISISEDLLTSLRMSRFEDNEI 781
Query: 614 AWVDAEVGKTENGMLSLLPISTPAPPH------------------------KSVLVGDLK 649
+V V + L + PP +S ++G+LK
Sbjct: 782 GYVRGRVVAHATSTIPTLESVSSLPPTTDRTVVSDPSKSRILGSRPKVALPQSTMIGELK 841
Query: 650 MADLKPFLSSKGIQVEFAG-GALRCG------------EYVTIRKVGPAGQKGGGSGTQQ 696
+ LK L++ I E G G L CG E V +RK K GS
Sbjct: 842 LTALKQRLAAVNIPAELIGEGVLICGGIRQTDNMDTSEETVAVRK------KAKGS---- 891
Query: 697 IVIEGPLCEDYYKIRAYLYS 716
+ +EG + E YYK+R +Y+
Sbjct: 892 VELEGNVSELYYKVRREIYN 911
>gi|256077070|ref|XP_002574831.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 928
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 210/359 (58%), Gaps = 24/359 (6%)
Query: 1 MGTSV-QVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M TS+ ++ LSG + YL+ +D F+ L+DCGW + D ++ +SK A +DAVL
Sbjct: 1 MATSIIKLHTLSGAGDNGSPCYLLQVDEFHCLLDCGWCEKLDSDYVKEVSKWAKHVDAVL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------ 107
LSH HLG LPY + GL+ PV++T PVY++G + MYD + SR +
Sbjct: 61 LSHQSLRHLGLLPYLVGTCGLNCPVYATTPVYKMGQMFMYDFFQSRHASEDFSHYTLDDV 120
Query: 108 ------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
V ++ Y Q L G+G G+ + P +GH LGGT+WK+ K+ ++YA+D+N +K
Sbjct: 121 DLAFDHVHQVKYQQTISLHGRGHGLCITPLPSGHTLGGTIWKLVKEDTSIVYALDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG ++ +RP +LI D N L+ QP R+ R E + + K+LR GGNVL+ VD+A
Sbjct: 181 ERHLNGATFDACIRPHLLIMDGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR LE+ LE W + Y + L YV+ + +D+ KS +EWM + + +SFE R
Sbjct: 241 GRCLEVAHFLEQCWLNQESGLMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRS 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F +H+ L +LD A PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 301 NPFHFRHMQLCHTLEQLD-AVSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 358
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 202/475 (42%), Gaps = 114/475 (24%)
Query: 350 PPPKAVKVTMSRRVPLVGEELIAYE---------------------EEQTRLKKEEALKA 388
P P A +T S P V E ++ + EE T ++K ++L
Sbjct: 465 PMPSASDITHSDVSPQVAEGILEKQPSCNSELENESTCGSNRPYGSEEGTHIEKSKSLSL 524
Query: 389 SL-VKEEESKASLGPDNNLSGDP-MVIDANNANASADVVEPHGGRYR---DILID----- 438
+L V + SK ++ P N P I N + GR++ DI
Sbjct: 525 TLSVPRDHSKKTIVPSNTTRLFPKTCIPLNMEQFGVTNLHLTSGRHQAGYDIYPGLHNQA 584
Query: 439 --GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK- 492
F + +FP E WD++G ++P+ + + QAA+ I D K
Sbjct: 585 GGQFFRVAKRTQLLFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKT 644
Query: 493 ----LDEGSASL--------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGR 534
+ G AS +LD+ ++ V++ L + ++C ++F+DYEGR+DG
Sbjct: 645 TSDIVSSGFASTSILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGE 703
Query: 535 SIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAY 591
++K IL + P +++LV +A A +HL +C + +++ P E ++ T + Y
Sbjct: 704 AMKRILIGLRPQEIILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIY 763
Query: 592 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVG------------------------------ 621
+ ++ + L+S++ F K+ DYE+AWV+A V
Sbjct: 764 QARMKDSLVSSLKFTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDV 823
Query: 622 --KTENGM---------LSLLPI-STPAPP---HKSVLVGDLKMADLKPFLSSKGIQVEF 666
T N + LP+ S P P HK+V V + K++DLK L S+G+ EF
Sbjct: 824 EMSTGNNLELRSRTPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEF 883
Query: 667 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L V I++ S ++++EG LC Y+++R LY QF +L
Sbjct: 884 VSGILVVDNCVAIKR----------SEAGKLLLEGLLCGTYFEVRRILYQQFAIL 928
>gi|449549925|gb|EMD40890.1| hypothetical protein CERSUDRAFT_111471 [Ceriporiopsis subvermispora
B]
Length = 934
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 249/940 (26%), Positives = 391/940 (41%), Gaps = 232/940 (24%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWNDHF--DPSLL-------QP----- 47
+ TPLSG + PL+YL+ +D L+DCG D D S QP
Sbjct: 2 ITFTPLSGSARTSSTIPLAYLLQVDDVRILLDCGSPDWCPEDASTSEDAEQKPQPWEKYS 61
Query: 48 --LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMY------ 99
L + A T+D VLLSH D H G PYA GL APV++T PV +G +
Sbjct: 62 EALKECAPTVDLVLLSHGDLSHSGLYPYAYAHWGLKAPVYTTLPVQAMGRIAATEDVESL 121
Query: 100 ----------------------------------DQYLSRRSVTR--------------- 110
D +SR+ R
Sbjct: 122 RDEMQVEEEEEAPSSPTASPEAEAGPSTPPPPASDTSVSRKKKARYVATIQEVHDAFDSI 181
Query: 111 --LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNG 167
L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +E HL+G
Sbjct: 182 NVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPTAGTILYAVDMNHMREHHLDG 241
Query: 168 TVL-----------ESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLL 215
TVL ES RP + ITDA A R+ R D ++ TL + ++LL
Sbjct: 242 TVLIRQANAGGGVFESLARPDLFITDAERAHVTTARRKDRVAALLDCVTATLTSRNSLLL 301
Query: 216 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS---F 272
P DS+ RVLELL++L+ +W L +PI L+ + +V+S +EW+G +I+K
Sbjct: 302 PCDSSTRVLELLVLLDQHWNYSRLKFPICLLSRTGREMLTFVRSMMEWLGGTISKEDVGE 361
Query: 273 ETSRDN------------------AFLLKHVTLLINKSELDN--APDGPKLVLASMASLE 312
+ S +N A +H+ N L + PKL+LA A+L
Sbjct: 362 DGSSNNKKRRRADDDADDEALGAFALRFRHLEFFPNPQALMQTYSSKDPKLILAVPATLS 421
Query: 313 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP------------- 352
G S +F ++A N+VL T R + GTL R+L Q D
Sbjct: 422 HGPSRALFTQFAEMPDNVVLLTGRSEEGTLGRILFDRWNAAQRDEAKWDRGKIGSNVMMD 481
Query: 353 KAVKVTMSRRVPLVGEELIAY-------------------EEEQTRLKKEEALKASL--- 390
+++ M+ +VPL G EL Y +Q L+ +E
Sbjct: 482 GTLRLKMNSKVPLQGAELEVYLAKERAAKEKEAAQKAAQARTQQRMLEADEGADDESDTD 541
Query: 391 ------------VKEEESKASLGPDNNLSGDPMVIDANNANA----------SADVVEPH 428
+++E A G D P + AD +
Sbjct: 542 SDSDEENEVELALEDEMDTAEDGADAQTPAPPRKRRGTKSGGVDPADWALGLDADDNQAR 601
Query: 429 GGRYRDILIDGFVPPSTSVAP---------MFPFYENNSEWDDFGEVINPDDYIIKDEDM 479
DI + G V +TS MFP+ E D++GEV++ ++ K + +
Sbjct: 602 AVLSFDIYLKGNVAKTTSFFKSEGQAQRYRMFPYMEKKRRVDEYGEVLDVGMWLRKGKVL 661
Query: 480 DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 538
++ A + + E A+ PSK ++ E+ VQ+ C L+F+D EG DGR++KT
Sbjct: 662 EEDAESEETKEARRREEEDVKKAPAEPPSKFITTEVEVQLACRLLFVDMEGLNDGRAVKT 721
Query: 539 ILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLS 596
I+ V P K+++VH E T+ L + C ++ + +Y PQ E + + ++ + LS
Sbjct: 722 IVPQVNPRKMIVVHAPPEGTDVLMESCANIRAMTRDIYAPQQGEMVQIGQHTNSFSISLS 781
Query: 597 EKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PI--------------------ST 635
++L++++ + D E+ +V + + + +L P+ S
Sbjct: 782 DELLASIKMSRFEDNEVGYVTGRIASLASSTIPVLEPVSSSSLPSTQSRKALRGRNLGSR 841
Query: 636 P-APPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSG 693
P A +S ++G+LK+ LK L++ G+ E G G L CG A +KG S
Sbjct: 842 PTATLPQSTMIGELKLTALKARLAAVGVHAELIGEGVLICGA---------AAKKGSTSD 892
Query: 694 T------------QQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ ++ +EG + + YY +R +Y+ L+
Sbjct: 893 SLEDSVAVKKTARGRVELEGSVSDVYYTVRREIYNMHALV 932
>gi|358338982|dbj|GAA43367.2| cleavage and polyadenylation specificity factor subunit 2, partial
[Clonorchis sinensis]
Length = 995
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 200/334 (59%), Gaps = 23/334 (6%)
Query: 25 IDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84
+D F+ L+DCGW+D D ++ L++ IDAVLLSH HLG LP+ + GL PV
Sbjct: 1 VDEFHCLLDCGWSDGLDKEYVKRLTQWTRHIDAVLLSHQSLRHLGLLPFLVGSCGLKCPV 60
Query: 85 FSTEPVYRLGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGI 126
++T PVY++G LT+YD Y S + V ++ Y Q +L G+G G+
Sbjct: 61 YATTPVYKMGQLTLYDFYQSMYASEDFTAFTLDDVDAAFDLVVQVKYQQTINLPGRGRGL 120
Query: 127 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA 186
+ P +GH LGGT+WK+ K+ D++YAVD+N +KE+HLNG ++ +RP +LI DA N
Sbjct: 121 CITPLPSGHTLGGTIWKLVKEDTDIVYAVDFNHKKERHLNGATFDACMRPHLLIMDASNT 180
Query: 187 LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYP 242
++ P R+ R E + +I KTLR GGN+L+ VD+AGR LE+ LE W + Y
Sbjct: 181 MYTHPRRKDRDETLRHSILKTLRRGGNILVAVDTAGRCLEVAHFLEQCWLNQDSGMMAYG 240
Query: 243 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 302
+ L++V+ + +D+ KS +EWM + + ++FE R N F +HV L +LD P+ PK
Sbjct: 241 LAMLSFVAFNVVDFAKSMVEWMSEKVMRTFEDQRTNPFHFRHVQLCHTLEQLDTVPE-PK 299
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
+VLAS + L GF+ +F EWA + N V+ T R
Sbjct: 300 VVLASASDLSCGFARQLFAEWADNDLNTVILTSR 333
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 74/333 (22%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL------DEGSASLI-- 501
+FP + WD++G ++ D + +D+ + K+ D +++LI
Sbjct: 555 LFPQVDRKIHWDEYGGHVDRDLFNTEDKLDSNTCTELKQKSQKVSQPILEDTTTSNLISP 614
Query: 502 --LDAKPSK------------VVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 547
L+ SK V++++L + ++C L+F+DYEGR+DG ++K I+ + P +
Sbjct: 615 SILECLASKNFQFDDPETKTHVITHQLEIPLRCELLFLDYEGRSDGEAMKRIVVGLRPQE 674
Query: 548 LVLVHGSAEATEHLKQHC---LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
L+LV S TE L +C + V+TP I+ T + Y+ ++ + L+S++
Sbjct: 675 LILVGNSRADTEQLATYCRTVMLLASNLVHTPSACSVINCTKEGDIYQARMKDSLVSSLR 734
Query: 605 FKKLGDYEIAWVDAEVGKTENGM------------LSLLPIS----TPAPP--------- 639
F K+ DYE+AWV+A + T+N L++ S P+PP
Sbjct: 735 FTKIRDYELAWVEANIDLTDNASSDPDHSESASDDLNMPNASGDDNPPSPPKTRSSLAAD 794
Query: 640 --------------HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
HK+V V + K++DLK L + G+ EF G L V I++
Sbjct: 795 RLPVLGLPTGPVGAHKTVFVNEPKLSDLKQLLLANGLVAEFVSGVLVVDNCVAIKR---- 850
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
S ++++EG L Y+ +R LY Q
Sbjct: 851 ------SEAGKLLLEGLLSRTYFTVRQVLYQQL 877
>gi|170090732|ref|XP_001876588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648081|gb|EDR12324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 901
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 251/922 (27%), Positives = 392/922 (42%), Gaps = 229/922 (24%)
Query: 5 VQVTPLSGVF---NENPLSYLVSIDGFNFLIDCG---WNDHFDPSLLQP----------- 47
+ TPLSG N PL+YL+ +D L+DCG W+ P P
Sbjct: 2 ITFTPLSGAAHSSNATPLAYLLQVDDVRILLDCGSPDWSPEPSPFEEHPEHDSGDVPWTK 61
Query: 48 ----LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL 103
L K A T+D VLLSH D H G P+A GL AP ++T PV +G + + +
Sbjct: 62 YCEALQKCAPTVDLVLLSHGDLAHCGLYPWAYTNWGLKAPAYTTLPVQAMGRIAVTEDIE 121
Query: 104 SRRSVTRLTYSQNY-------------HLSGKGEGIVVAP-------------------- 130
R + + +S + + P
Sbjct: 122 GIRDEENVDGEREAEPDKQKQDTDGTEEISAESPSFIFNPKRKFVSTTAEVQDAFESINT 181
Query: 131 -------HVAGHLLGGTV-------------WKI-TKDGEDVIYAVDYNRRKEKHLNGTV 169
H+ G G T+ WKI + ++YAV+ N +E+HL+GTV
Sbjct: 182 LRYSQPTHLQGKCQGLTITPFNAGHTLGGTIWKIRSPSSGTIVYAVNVNHMRERHLDGTV 241
Query: 170 L---------ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 219
L + RP +LITDA A R+ R+ D IS TL + ++LLP DS
Sbjct: 242 LIRQAAGGIFDPLARPDLLITDAERASVTTSRRKDRDAALIDTISATLGSRSSLLLPCDS 301
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK----SFETS 275
+ RVLELL++L+ +W L YPI L+ + +V+S +EW+G +I+K T
Sbjct: 302 STRVLELLVLLDQHWNYSRLRYPICLLSRTGREMLTFVRSMMEWLGGTISKEDVGEEGTG 361
Query: 276 RDNA-----------------FLLKHVTLLINKSEL--DNAPDGPKLVLASMASLEAGFS 316
R N +H+ N L + PKL+LA ASL G S
Sbjct: 362 RQNQNKRRRDEEGDEDALGALTFFRHLEFFPNPQALLQTYSSKDPKLILAVPASLSHGPS 421
Query: 317 HDIFVEWASDVKNLVLFTERGQFGTLARML------QADPPPK--------------AVK 356
++F ++A+ N+VL T R + GTL R L P K A+
Sbjct: 422 RNMFSDFAAVPDNVVLLTGRSEEGTLGRALFDKWNNSQRPDDKWDKGKIGSNVMMDGAIT 481
Query: 357 VTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVK----------------------E 393
+ M+ +VPL G EL A+ +EE+ +KE A +A+L + E
Sbjct: 482 IKMNHKVPLQGAELEAHLQEERVAKEKEAAHQAALARNQRMLEADEDDSDSDLDSDADEE 541
Query: 394 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP---- 449
E + +LG D ++D ++ + DI I G V +TS
Sbjct: 542 AEVRQALGGD--------MMDTDDGEGLTKQLLSF-----DIYIKGNVSKATSFFKISGS 588
Query: 450 ------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD---EGSASL 500
MFP+ E D++GE I+ ++ K + +++ A D K E A
Sbjct: 589 QTQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVLEEEAESDEVKDYKRRTQAEEEAKA 648
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
+ PSK V+ E+ +Q+ C L+F+D EG DGR++KTI+ V P K+++VH ATE
Sbjct: 649 SIREPPSKYVTTEIEIQLACRLLFVDMEGLNDGRAVKTIVPQVNPRKMIIVHAPPNATEA 708
Query: 561 LKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA 618
L + C ++ + +Y P + E+I + ++ + +S++L++++ D +IA+V
Sbjct: 709 LIESCGNIRAMTKDIYAPTVGESIQIGQQTNSFSISISDELLASLKMSSFEDNQIAYVRG 768
Query: 619 E-VGKTENGMLSLLPISTP------------------------APPHKSVLVGDLKMADL 653
V + + +L P+S+ A PH S ++G+LK+ L
Sbjct: 769 RIVAHATSTIPTLEPVSSSTLSEDPVDSKVTVKRRTLGSRQQVALPH-STMIGELKLTAL 827
Query: 654 KPFLSSKGIQVEFAG-GALRC-------------GEYVTIRKVGPAGQKGGGSGTQQIVI 699
K L+S G+Q E G G L C GE V++RK+ GT + +
Sbjct: 828 KARLASIGVQAELIGEGVLICGAGAKRNASSDTLGESVSVRKL--------ARGT--VEL 877
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EG + E YY +R +YS L+
Sbjct: 878 EGNVSEVYYMVRREIYSLHALV 899
>gi|449018596|dbj|BAM81998.1| cleavage and polyadenylation specific factor 2, 100kD subunit
[Cyanidioschyzon merolae strain 10D]
Length = 884
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 240/409 (58%), Gaps = 31/409 (7%)
Query: 1 MGTSVQVTPLSGVFNENP-LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST-IDAV 58
M +S++VTPL G P L ++ ID FL+DCGWND FD +LL+PL V + IDAV
Sbjct: 1 MASSIRVTPLYGAHTSAPPLCTVLEIDDGVFLLDCGWNDRFDVALLEPLRPVITRGIDAV 60
Query: 59 LLSHPDTLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR----------- 105
L+HPD HLGALPY + +LGL S P+++T PV LG + +YD + R
Sbjct: 61 FLTHPDLAHLGALPYLVGKLGLPASVPIYATTPVQILGQMFLYDAHQHRYYGEDFETFTL 120
Query: 106 ----RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ R+ + + + + + AGHLLGG +WK K+ E+++Y VD N R+
Sbjct: 121 DDVDEAFERMRPVKYQQVIELAQNVFATAYPAGHLLGGAIWKFQKESEEIVYCVDVNHRR 180
Query: 162 EKHLNG--TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
E+ LNG + + +P+ LI A L P Q++E +A+ +TLR GG+VL+PVD
Sbjct: 181 ERLLNGCASTPQLITKPSHLIVGASGVL--TAPSQKKETDLWEAVVETLRGGGDVLMPVD 238
Query: 219 SAGRVLELLLILEDYWAEH---SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
SAGR LELL+ +++W H + YP+ F +V TI++ KS +EWM D++ +F++
Sbjct: 239 SAGRCLELLVAADEFWTAHPDVAALYPVVFAQHVGIHTIEFAKSLIEWMSDAVVSAFDSR 298
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW-ASDVKNLVLFT 334
R+N F L+HV ++ + D P PK+V+A + SL+ GFS +F++ A+D + +VL +
Sbjct: 299 RENPFRLRHVQVVHGLDQADALP-SPKVVMAPLPSLDYGFSRVLFLQRIAADPRAMVLMS 357
Query: 335 ERGQFGTLARMLQADPPPKAVK--VTMSRRVPLVGEELIAYEEEQTRLK 381
+R + GT A L + V+ +T + RVPL GEEL ++ EQ + +
Sbjct: 358 DRLESGTFAFRLAVEKEKLRVREPLTYAERVPLQGEELERWQREQEKAR 406
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 52/283 (18%)
Query: 489 DDGKLDEGSASLILDAKPSKVVS---NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 545
+D + + + S L+ P+K+V N+LT+ +C + D G ADGRS++ ++ +AP
Sbjct: 604 NDAAVADSTTSRALETLPTKLVRYVVNDLTI--RCAVRNFDMAGLADGRSLRQLIVSMAP 661
Query: 546 LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 605
+++++HGS T L ++ K +Y P+ E +DV+SD Y+++L + L+ +
Sbjct: 662 QRVIIIHGSERETAALTEYLGKKNFTRLYAPRAREMVDVSSDTSVYRIKLDDSLLRRCFW 721
Query: 606 KKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSV---------------------- 643
+++ DYE+AW D + +G L L+ + + +
Sbjct: 722 RRMQDYELAWFDGYIQTDPDGQLRLVSVERQTEQEQQLPEGTESGVDAAWLAAKTTDAAS 781
Query: 644 ----LVGDLKMADLKPF-LSSKGIQVEFAG---GALRCGEY--VTIRKVGPAGQKGGGSG 693
LV + A+ F L ++ QV G LR + + + + PA GG
Sbjct: 782 AATALVDGDRTANTTTFALVTERTQVGHLNVFVGDLRLSDLKEIMTKSLMPAEFAGGALC 841
Query: 694 TQQ---------------IVIEGPLCEDYYKIRAYLYSQFYLL 721
+ +VIEG L +Y+ +R +YSQ+ +L
Sbjct: 842 VENDRPPSIVLVRKRQHDLVIEGSLSAEYFDVRDLVYSQYMIL 884
>gi|443926973|gb|ELU45512.1| cleavage and polyadenylation specificity factor subunit
[Rhizoctonia solani AG-1 IA]
Length = 854
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 237/851 (27%), Positives = 375/851 (44%), Gaps = 175/851 (20%)
Query: 18 PLSYLVSIDGFNFLIDCGWND-HFDPSL-------------------LQPLSKVASTIDA 57
PL Y++ ID L+DCG D H +PS + L+ A T+D
Sbjct: 18 PLCYILQIDDVRILLDCGAPDWHPEPSTETSSTPGESQQVEPHWVRYCEQLAVQAPTVDL 77
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS---------- 107
VLLSH D H+G PYA + GL AP +++ PV +G + + D S RS
Sbjct: 78 VLLSHADVAHVGLFPYAHAKYGLRAPAYASLPVQAMGRMAVLDNIESIRSEEPVDDPANS 137
Query: 108 -----------------------------------VTRLTYSQNYHLSGKGEGIVVAPHV 132
+ L YSQ HL +GI + P
Sbjct: 138 DTGLDIALPTFGLTPDPSKQRKIASIKETNDAFDSLHALRYSQPAHL----QGITITPFS 193
Query: 133 AGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL----------ESFVRPAVLIT 181
AGH +GGT+WKI + V+YAV+ N KE+HL+GTVL ES RP +LIT
Sbjct: 194 AGHTIGGTIWKIRSPSAGTVVYAVNLNHTKERHLDGTVLLKGGAGGGVLESLSRPDLLIT 253
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 240
DA L R+ R+ DA++ L++G +VL+P D++ R+LELL++ + +W+ L
Sbjct: 254 DAERTLVVSARRKDRDAALLDAVTNVLQSGHSVLMPCDASTRILELLVLFDQHWSFSKLR 313
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITK--SFETSRDNAF---------LLKHVTLLI 289
P+ ++ ++ + V+S +EW G ++TK +F+ + L + L
Sbjct: 314 APLCLVSRTANDMLTLVRSMMEWFGGTVTKEEAFDAGNNKKRKRNQEGEDDALGTLALRF 373
Query: 290 NKSELDNAPDG---------PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
E+ +PD PKL+L A+L G S IF E+AS N V+ + + G
Sbjct: 374 KHLEIFPSPDALVSRYPSSMPKLLLVVPATLSHGNSRRIFAEFASVPGNAVILSTPSEPG 433
Query: 341 TLARML-------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEAL-KASLVK 392
TLA L Q+D + ++ + + L + Y E++ K+ +A +A+L +
Sbjct: 434 TLANTLFNEWNLGQSDNE-RFGHGSVGQPIQLNSTMTLTYLEKERAAKERQATQRAALAR 492
Query: 393 EEESKASLGPDNNLSGDPMVIDANNANASADVVE--PHGGRYR-----DILIDGFVPPST 445
+ + D++ S + D+ P G DI + G V +
Sbjct: 493 SQRLLEADEADSDSSNSEADEEEVEDALGDDMDNGVPEGDESAKQLSFDIFLKGNVSRAA 552
Query: 446 SVAP---------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEG 496
S MFP E D++GE I+ ++ KD + A + + +
Sbjct: 553 SFFKTAGQASRFRMFPHIERKRRVDEYGETIDVAAWLRKDRALAVAVEAEEAREAQQKKQ 612
Query: 497 SA---SLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
S PSK + + VQ++C L+F+D +G DGRS+KTI+ V P K+++VH
Sbjct: 613 EEEEKSKTPAEPPSKFIVETIEVQLRCKLLFVDMDGLNDGRSVKTIIPQVNPRKMIIVHS 672
Query: 554 SAEATEHLKQHCL--KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
EAT+ LK+ CL K + ++ P + + + + + V LS++L+ D
Sbjct: 673 HREATDALKESCLSIKAMTRDIHAPDVGDVVQIGQQTNVFTVALSDELI-------FEDN 725
Query: 612 EIAWVDAEVGKTENGMLSLL----PIST-------PAPPHKSVL-------VGDLKMADL 653
EI +V V N +S+L P+S+ PA + VL +GDL++ L
Sbjct: 726 EIGFVHGRVTGNANSTVSVLEPTMPVSSSGDAENIPASDVRPVLSLPWSTMIGDLRLTAL 785
Query: 654 KPFLSSKGIQVEFAG-GALRCG--------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLC 704
K L GI EF G G L CG + V +RK + Q+V+EG +
Sbjct: 786 KTRLGVLGIAAEFIGEGVLVCGTRTSGTLDDVVAVRK----------TARGQVVVEGSIS 835
Query: 705 EDYYKIRAYLY 715
+ YY +R +Y
Sbjct: 836 DVYYTVRREVY 846
>gi|26344199|dbj|BAC35756.1| unnamed protein product [Mus musculus]
Length = 296
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 190/296 (64%), Gaps = 23/296 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFE 296
>gi|390601510|gb|EIN10904.1| hypothetical protein PUNSTDRAFT_112695 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 937
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 244/927 (26%), Positives = 389/927 (41%), Gaps = 216/927 (23%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCG---WNDHFDPS--------------- 43
+ TPLSG PL+YL+ +D L+DCG W PS
Sbjct: 2 ITFTPLSGGAKSTRTTPLAYLLQVDDVRILLDCGSPDWCPERSPSSSAVTTESLSYPWDE 61
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--------- 94
L + A ++D VLLSH D H G YA + GL AP ++T PV +
Sbjct: 62 YCDALRENAPSVDLVLLSHADLAHSGLYAYAYSRWGLKAPTYTTLPVQAMARVATLEDVE 121
Query: 95 -------------------------------------------LLTMYDQYLSRRSVTRL 111
+ T ++ + + SV L
Sbjct: 122 GVRDEEDVDPPEQQDEDQAEGDGDEKAFEGEKTKPVQRKTRKYVATAFEVHEAFDSVNTL 181
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL 170
YSQ HL GK +GI + P AGH LGG +WKI + ++YAV+ N +E+HL+GTVL
Sbjct: 182 RYSQPCHLQGKCQGITITPFNAGHTLGGAIWKIRSPSAGTIVYAVNLNHMRERHLDGTVL 241
Query: 171 ---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
E RP +LITDA R+ R+ D I+ L ++ +P DS+
Sbjct: 242 IRPGGGGVFEPLARPDLLITDAERTNVVSSRRKDRDAALIDTITAALARRSSLFMPCDSS 301
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS--------- 271
R+LELL++L+ +WA L YPI L+ + +V++ +EW+G +I+K
Sbjct: 302 TRLLELLVLLDQHWAYQRLRYPICLLSRTGREMLTFVRAMMEWLGGTISKEDVGVGEDGQ 361
Query: 272 ------FETSRDN------------AFLLKHVTLLINKSELDN--APDGPKLVLASMASL 311
R N A +H+ N L N + PKL+LA ASL
Sbjct: 362 GGGKQDKRRRRVNDDEEGEDALGALALRFRHLEFFPNPQALLNTYSSKDPKLILAVPASL 421
Query: 312 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPPPKAVKV------ 357
G S +F +A+ N+++ T+RG+ GTL L +A+ K+
Sbjct: 422 SHGPSRALFSTFAAVPDNVIILTQRGEEGTLGNDLFKKWNNSQRAEHKWDKGKIGSNVML 481
Query: 358 ------TMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES-------------- 396
M+ +VPL G+EL A+ +E+ ++KE A K + E++
Sbjct: 482 DGNMILKMNSKVPLQGDELEAFLAKERAAMEKEAAEKTADDFEQQRMLEADEEDTDTDED 541
Query: 397 -KASLGPDNNLSGDPMVIDAN-NANASADVVEPHGGRYR--------------------- 433
+ +L+ D + + +A A EP G R
Sbjct: 542 SDDEDEVERSLAADVAEAEPDPDAPAGGAFAEPGGQSRRSKRVRGVDDADWGLDADEGLN 601
Query: 434 ------DILIDGFVPPSTSVAP-----------MFPFYENNSEWDDFGEVINPDDYIIKD 476
D+ I G V + S MFP+ E DD+GE+I+ ++ K
Sbjct: 602 RQVLSFDVYIKGNVSRAASFFKSADGQSQQRFRMFPYIEKKRRVDDYGELIDVGMWLRKG 661
Query: 477 EDMDQAAMHIGGDDGKLDEGSASLILDA---KPSKVVSNELTVQVKCLLIFIDYEGRADG 533
+ ++ A + K ++ + A PSK VS+E+ VQ+ C L+F+D EG DG
Sbjct: 662 KVFEEEAESNESKELKRNQAEEEAKVSAFEEPPSKFVSSEVEVQLACRLLFVDMEGLNDG 721
Query: 534 RSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAY 591
R++KTI+ V P K+++VH EAT L + C ++ + +Y P++ +++ + ++
Sbjct: 722 RAVKTIVPQVNPRKMIIVHAPTEATGSLIESCGNIRAMTKEIYAPELLQSVSIGQQTNSF 781
Query: 592 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PI----------STPAPPH 640
+ LSE L++++ D E+ +V V + +L P+ + PA P
Sbjct: 782 SISLSEDLITSIKMSSFEDNEVGYVTGRVAIHAGSAVPVLEPLAGSAATRKTKTLPARPG 841
Query: 641 -----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 688
+S L+G+LK+ LK L+S GI+ E G G L CG+ + +
Sbjct: 842 VIGMRAPIDLPRSTLIGELKLTTLKSRLASVGIRAELVGEGVLICGKRRSASEPLEGTVA 901
Query: 689 GGGSGTQQIVIEGPLCEDYYKIRAYLY 715
S + +EG + YY +R +Y
Sbjct: 902 VRKSTRGHVELEGTASDVYYIVRREIY 928
>gi|326436560|gb|EGD82130.1| hypothetical protein PTSG_02804 [Salpingoeca sp. ATCC 50818]
Length = 630
Score = 265 bits (676), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 182/609 (29%), Positives = 293/609 (48%), Gaps = 70/609 (11%)
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
++TR+ YSQ +L G G I P AGH++GG+VW+ITKDGE+V+YAVDYN R+E HLN
Sbjct: 42 NITRIKYSQTVNLPGVGISITAYP--AGHMIGGSVWRITKDGENVVYAVDYNHRREWHLN 99
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQD---AISKTLRAGGNVLLPVDSAGRV 223
T L+ PA+LITD N + P R RE+ A+ ++L NVL+ D+AGR
Sbjct: 100 STSLDILTWPAILITDTLNVAYTSPKR--REVLGQLLAAVRESLNKQANVLVLADTAGRS 157
Query: 224 LELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
ELL +L+ + S +F+ + +D V + ++++ D + + F
Sbjct: 158 FELLQVLDQLAGKMSGASQFFFVGACTQVVMDTVTTMVDFLSDGLQAQMNEHKAMPFRFP 217
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
++ + + + NA GPK+V+ + LEAGFS +F +WA++ N ++FT R TLA
Sbjct: 218 NIKRVQSLDAI-NAHPGPKVVVTAELGLEAGFSRQLFAQWAANPDNAIIFTRRPDEDTLA 276
Query: 344 RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPD 403
+ + P +++ + RV L GEEL A+ E+ + E + + + + +G +
Sbjct: 277 HSIYHNTAPDTLQLRLGARVELEGEELEAHRAER---EMREHMDETAAASDAAADGMGRE 333
Query: 404 NNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFV-----PPSTSVAPMFPFYENNS 458
M +D S+D + D+L F P +FP +
Sbjct: 334 -------MGMDVQEEQLSSDDEDHEPYERHDLL--AFTASKAGPVQRRRNAVFPEDTHTM 384
Query: 459 EWDDFGEVINPDDYIIK-----DEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 513
+WDD+G ++ Y I+ E + AM D + D + L KP+KVV +
Sbjct: 385 DWDDYGLKVDMSRYRIEVVPEAPEPAAETAM-----DQREDSSAILTALLEKPTKVVEHV 439
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-CPH 572
+ + +KC + D EGR DG S+K I+ HV P LVLV G T+ + C + +
Sbjct: 440 VEISLKCKVHRFDVEGRTDGESMKRIMEHVKPRNLVLVQGPPAETKTFAEFCQSKLGIEN 499
Query: 573 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK---------- 622
+ TP +++TS ++V+L E L+S + ++ GDYE+AWVD + K
Sbjct: 500 IVTPAFGRPVEITSGRNIFQVKLREALVSALDLRRAGDYEVAWVDGVMAKGIKPAAPEGE 559
Query: 623 --------------TENGMLSL----------LPISTPAPPHKSVLVGDLKMADLKPFLS 658
+ G L+ L + PH V VGDL+++D K L
Sbjct: 560 GGDGEGGNGEGGEDADAGSLTSNIDMDAGVPELGVDEEPEPHDVVFVGDLRLSDFKRLLI 619
Query: 659 SKGIQVEFA 667
+G + F+
Sbjct: 620 DEGYEPPFS 628
>gi|123476407|ref|XP_001321376.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121904201|gb|EAY09153.1| hypothetical protein TVAG_363680 [Trichomonas vaginalis G3]
Length = 700
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 346/738 (46%), Gaps = 82/738 (11%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
TS+ PLSG + P +YL+ +D F FL+DCGW + F +Q ++ S ++AVLLSH
Sbjct: 6 TSISFQPLSGAQSTTPFAYLLHVDEFTFLLDCGWTEDFRLEDIQTQIEICSHVNAVLLSH 65
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR---------------- 106
H+GALPY GLSAP+F+T P+ LG L +YD YL+ R
Sbjct: 66 ASIEHIGALPYLCSH-GLSAPIFATMPIPALGSLLIYDSYLNIRDEEEFKEFNANDIDQA 124
Query: 107 --SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+ R+TY Q+ L GK I + P+ AG+ LGGTVW+I K +VIY+V K+
Sbjct: 125 FQKINRMTYQQSEQLDGKN--ITITPYNAGNTLGGTVWRIVKGQNEVIYSVSVGDHS-KY 181
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
L+ LES + P + I DA ++ ++ + F I L G ++ P D L
Sbjct: 182 LSSFSLESGLHPTLWILDARGPESHRDGKE--DEFWRQIFGKLNGGKTIIFPTDGVSGSL 239
Query: 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD----NAF 280
E++ L++ W + + + IYFL++ S + + +S ++ I + + N
Sbjct: 240 EVISRLKEQWKKVNWKWKIYFLSHSSPAVLKNAQSLSNYLSLDIQEKINSGEYPFEFNDP 299
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
L + + + + ++D + +V++S +LE GFS +F++ A+ NL++FT+R
Sbjct: 300 DLSYFSCVTSIKDIDFSQGC--VVISSTDTLERGFSRKLFLDKANS-DNLIIFTQREPPY 356
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
+LA L+ + + + + R PL GEEL+ + E+Q+ L+++ + +E + S
Sbjct: 357 SLAEALRTNNAHRTFRFIIKHREPLTGEELVKFMEKQSALQEKANEIEGDISDESDEVSQ 416
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
+ N++ A ++ H +++ + S+
Sbjct: 417 E------------NIENSSQIAQSLKKHFFQFK--------------------RKETSDL 444
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
D+G I ++Y+ M + M D L + + L KPSK + +
Sbjct: 445 SDYGANIVVENYLKGANPMAPSKMDTSKMIDSSLTQQNFIQELVYKPSKFMITQYDYNFV 504
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---VYTP 576
+F + E +D +I ++ P ++++ E E L + LK P +Y P
Sbjct: 505 GTAVFWNLERTSDYSTIAYNVTSFNPTDIIIIGAKKENCEELMK-ILKGKSPQNTRIYIP 563
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG-MLSLLPIST 635
I E + + DL K+ LS L+S + F G +IA+++A + E+ + P+ +
Sbjct: 564 AIGEKVSLQRDLTTRKISLSRALLSGIDFVNCGVNDIAYIEATLKADEHQQFVQARPVES 623
Query: 636 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEF-AGGALRCGEY-VTIRKVGPAGQKGGGSG 693
A H++ VG + M+ L L S GI +F AGG L CG V +R V
Sbjct: 624 SAG-HQATFVGTIDMSQLSSKLDSLGINNDFKAGGVLECGRRRVKVRLVNE--------- 673
Query: 694 TQQIVIEGPLCEDYYKIR 711
+ I +EG +C DY K+R
Sbjct: 674 -KSITVEGMICPDYIKVR 690
>gi|402226056|gb|EJU06116.1| hypothetical protein DACRYDRAFT_73414 [Dacryopinax sp. DJM-731 SS1]
Length = 925
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 241/931 (25%), Positives = 383/931 (41%), Gaps = 235/931 (25%)
Query: 8 TPLSGVFNE----NPLSYLVSIDGFNFLIDCGWND----------------------HFD 41
TPL G N YL+ ID L+DCG D +
Sbjct: 5 TPLCGSAQSTSVPNAFCYLLQIDDIRVLLDCGAPDWRLGAGEDVEGEDEAASRRETKKWW 64
Query: 42 PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ 101
L L++ A ID VL +H H+G YA +LGLSAP F+T PV LG + + +
Sbjct: 65 SEYLSLLTRTAPEIDLVLFTHGSLQHIGLYSYARAKLGLSAPAFATLPVQALGRIAVLED 124
Query: 102 YLSRR-------------------------------------------SVTRLTYSQNYH 118
R S+T L YSQ
Sbjct: 125 VEGWRAEVDVDNEVPEEYSGDGDVKMESGIQLLHKAIATADVVKEAFDSITTLKYSQATQ 184
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------- 170
L+GK + + + + A H LGGT+WK+ + ++YAV N KE+HL+GT L
Sbjct: 185 LTGKLQALTLTAYSASHTLGGTLWKLRSASSGTLLYAVGLNHMKEQHLDGTALVRPGGGG 244
Query: 171 --ESFVRPAVLITDAYN-ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
E RP +LITDA + + R++ E F ++I+ TLR+ G+VL+PVD++ R++ELL
Sbjct: 245 VGEGLGRPDLLITDAGRVGIISVRRREREEAFLESITNTLRSSGSVLIPVDASTRLVELL 304
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET---SRDNA----- 279
+IL+ +W + P+ ++ + +V+S +EWMG IT+ E +D+
Sbjct: 305 IILDQHWTQAKTRAPLCLVSRTGKECVTFVRSLMEWMGGWITREGEVPTIGKDSKKRKRR 364
Query: 280 -------------------FLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHD 318
KH+ + + L +A P PK++LA+ ++ G S
Sbjct: 365 NRKDEEDIEEEDALLANMILRFKHLQIFPSPEALMDAIHPSAPKVILATPLTMSHGASRA 424
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP----------KA---VKVT 358
+F ++S NL+L + GTLAR L QA+ KA + V
Sbjct: 425 MFESFSSMRNNLLLLVNIAEKGTLARSLWDIWQREQAETAKWGKGRLGAIVKAETDISVR 484
Query: 359 MSRRVPLVGEELIAY-------------------------EEEQTRLKKEEALKASLVKE 393
M+ +VPL G EL Y +++ ++EA AS
Sbjct: 485 MNAKVPLAGVELEEYLNAEKAAKEKAAAEAAARPQLLLEADDDDEGDSEDEASDASSELA 544
Query: 394 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR---DILIDGFVPPST----- 445
E + G D ++ + A A+ E R + DI + G V +T
Sbjct: 545 VEEELGGGTDEGVATRHFAEGSGAKGAGAEEEEADSARQQLSFDIYLKGKVARATFFKSS 604
Query: 446 -----SVAPMFPFYENNSEWDDFGEVINPDDYIIKDED--------MDQAAMHIGGDDGK 492
+ MFP+ E D++GE I+ ++ + + +QAA +
Sbjct: 605 SGAQATRYRMFPYVEKRRRIDEWGETIDVGTWMRRGKKWEEEEETEENQAAKE--ARRKR 662
Query: 493 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 552
+E A PSK ++ + ++ V+C + F+D+EG DGR+ K I+ V P K++LV
Sbjct: 663 QEEEQAQHAPPEPPSKYITEQHSIDVRCKVYFVDFEGLNDGRATKMIVPQVNPRKMILVA 722
Query: 553 GSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 610
EAT L Q C ++ + + TP + E + + +Y + + E L S + K D
Sbjct: 723 SQPEATAELMQACGEIRSMTREISTPGVGEEVKIGEHSHSYSISVGETLFSTLKMSKFED 782
Query: 611 YEIAWVDAEVGKTENGMLSLLPISTPAPPHKS---------------------------- 642
E+A+V + N S +P+ PA KS
Sbjct: 783 NEVAFVSGRIAFNPN---SAIPVLEPAASAKSQDSAVVPTGTDQAREEQTMIATVPAQIL 839
Query: 643 ---VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-----------EYVTIRKVGPAGQ 687
L+GDL++ LK LS+ GI +FAG G L CG + V++RK+G
Sbjct: 840 PQTTLIGDLRLTALKARLSTLGITADFAGEGVLICGLSQTGNGGSDTDIVSVRKMGRG-- 897
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
++ + G + + YY +R LY +
Sbjct: 898 --------RVEVAGNVSDVYYTVRRELYGLY 920
>gi|302833565|ref|XP_002948346.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
gi|300266566|gb|EFJ50753.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
Length = 375
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 228/377 (60%), Gaps = 39/377 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M TSV+ TPLSGV E+PL YL+ ID F L+DCGW+++FD S L+P+ +V ++AVLL
Sbjct: 1 METSVRFTPLSGVDAESPLCYLLEIDSFTILLDCGWDENFDESALEPIKRVLPRVNAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYS------ 114
SHPD HLGALPY + + GL+AP+FST+PV R+G + M++ YL++++ T + ++
Sbjct: 61 SHPDVAHLGALPYLVGKCGLTAPIFSTKPVRRMGEMFMFESYLAKQASTSIDFAIFDLDD 120
Query: 115 -----------QNYHLSGKGEGIVVAPHVAGHLL-----------GGTVWKITKD-GEDV 151
S + + + P AG + GG VW+I+ GE+V
Sbjct: 121 VDAAFRLNPRWTELRFSQRHQLLAAMPATAGGGIAIAAHAAGRYPGGAVWRISLGCGEEV 180
Query: 152 IYAVDYNRRKEKHLNGTVLESFV---RPAVLITDAYNALHNQPPRQQR-EMFQDAISKTL 207
+YAVDYN RKE+ LN T L+ + +PA+LI+D N L R +R E F DAI+ T+
Sbjct: 181 VYAVDYNHRKERLLNRTNLDELLSSQQPALLISDCLNGLTENTDRHRRDEEFLDAITATV 240
Query: 208 RAGGNVLLPVDSAGRVLELLLILEDYWA----EHSLNYPIYFLTYVSSSTIDYVKSFLEW 263
A G+VL+P D+AGRVLEL L+L+++++ + P+ L+ + +++ ++ LE+
Sbjct: 241 EAEGSVLIPTDAAGRVLELALLLDEHFSRARYDKGTTSPV-LLSATIKTVLEFARTQLEY 299
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
+G + ++F R F + ++++ EL P GPK+VLA M SLE+G + ++ V+W
Sbjct: 300 LGSELVQAFSLKRSVPFSFRKLSVITRLEELGAFP-GPKVVLAPMPSLESGPARELLVQW 358
Query: 324 ASDVKNLVLFTERGQFG 340
+ +N ++FTER Q G
Sbjct: 359 GALPRNTIIFTERAQVG 375
>gi|395330425|gb|EJF62808.1| hypothetical protein DICSQDRAFT_135076 [Dichomitus squalens
LYAD-421 SS1]
Length = 943
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 226/801 (28%), Positives = 352/801 (43%), Gaps = 170/801 (21%)
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 139
+S+P S+E R + T+ + + SV L YSQ HL GK +G+ + P AGH LGG
Sbjct: 152 VSSPPPSSEGKRRKNVATLQEVVDAFESVNVLRYSQPCHLQGKCQGLTIIPFNAGHSLGG 211
Query: 140 TVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-----------ESFVRPAVLITDAYNAL 187
T+WKI + ++YAVD N +E+HL+GTVL ES RP +LITDA A
Sbjct: 212 TIWKIRSPSAGTILYAVDMNHMRERHLDGTVLIRQASAGGGVFESLARPDLLITDAERAN 271
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
R+ R+ D ++ TL + ++LLP D++ RVLELL++L+ +W L YPI L
Sbjct: 272 VTTARRKDRDAALLDCVTATLSSRNSLLLPCDASTRVLELLVLLDQHWNYSRLKYPICLL 331
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDN-----------------------AFLLK 283
+ + +V+S +EW G +I+K E +N A K
Sbjct: 332 SRTGQEMLTFVRSMMEWFGGTISK--EDVGENGENGRRDRRRRDDDHDEEALGAFALRFK 389
Query: 284 HVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
HV ++ L + + PKL+LA A+L G S IF E+A N+VL T RG+ GT
Sbjct: 390 HVEFFLSPQALMSTYSSKDPKLILAVPATLSHGPSRAIFAEFAEIPDNVVLLTGRGEPGT 449
Query: 342 LARML-------QADPPP-------------KAVKVTMSRRVPLVGEELIAY-------- 373
L R+L Q + +++ M +VPL GEEL Y
Sbjct: 450 LGRLLFDKWNDSQREEAKWDRGKIGNNIMMDGVLRLEMHSKVPLQGEELEEYLAKERAAR 509
Query: 374 ---EEEQTRLKKEEALKASLV-----------------KEEESKASLGP---DNNLSGDP 410
+Q L + + + + +E E + +LG D G P
Sbjct: 510 EKAAAQQAALARTQRMLEADEAESESEDDTDESGSDSDEESEVERTLGEDFMDTAEEGKP 569
Query: 411 MVIDANNAN----------ASADVV----EPHGGRYR----DILIDGFVPPSTSVAP--- 449
+ N A D V EP G DI + G V +TS
Sbjct: 570 VRTGRTNGRRKRKRAEGGGADGDWVVGGNEPEDGAVTRISFDIYLKGNVTKATSFFKSAE 629
Query: 450 -------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLIL 502
MFP+ E D++GE ++ ++ K + +++ + K +
Sbjct: 630 GQTQRFRMFPYVEKKRRVDEYGETVDVGMWLRKGKVFEESTESEESKEAKRRKEEEEAKK 689
Query: 503 DAK--PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
+ PSK V++ VQ+ C L F+D EG DGR++KTI+ V P K++LVH AT+
Sbjct: 690 TPREPPSKYVTSVAEVQLACRLFFVDLEGLNDGRAVKTIVPQVNPRKMILVHAPQAATDA 749
Query: 561 LKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA 618
L + C +K + +Y P ETI + ++ + LS++L++++ + D E+A+V
Sbjct: 750 LIESCASIKAMTKEIYAPPQGETIQIGQHTNSFSISLSDELLASLKMSRFEDNEVAYVSG 809
Query: 619 EVGKTENGMLSLL---------PISTPAPPHK--------------SVLVGDLKMADLKP 655
V + + +L P S P P + S ++G+LK+ LK
Sbjct: 810 RVSSLASSTIPVLEPAAITHFQPASAPHQPLRGRMLGSRPTQALPQSTMIGELKLTALKT 869
Query: 656 FLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ--------------QIVIE 700
L+S G+Q E G G L C G A +KG G G ++ +E
Sbjct: 870 RLASIGVQAELVGEGVLIC---------GAAAKKGAGVGLDSLGDSVAVRKTARGRVEVE 920
Query: 701 GPLCEDYYKIRAYLYSQFYLL 721
G + + Y+ +R +YS L+
Sbjct: 921 GSVSDVYHTVRREVYSLLALV 941
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 18/104 (17%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---W-----NDHFDPSLLQP------ 47
+ TPLSG PL+YL+ +D L+DCG W D + S L P
Sbjct: 2 ITFTPLSGPARSARTVPLAYLLQVDDVRILLDCGSPDWCPETTQDGTEESELAPWEKYCD 61
Query: 48 -LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
L + AS++D VLLSH D H G PYA GL+AP ++T PV
Sbjct: 62 SLKECASSVDLVLLSHGDLSHCGLYPYAHAHWGLTAPAYTTLPV 105
>gi|388579716|gb|EIM20037.1| hypothetical protein WALSEDRAFT_61199 [Wallemia sebi CBS 633.66]
Length = 844
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 222/845 (26%), Positives = 371/845 (43%), Gaps = 145/845 (17%)
Query: 4 SVQVTPLSGVFNEN--------PLSYLVSIDGFNFLIDCG---W--NDHFDPSLLQPLSK 50
++ VTPL+G N P YL+ I+ L+DCG W ND + L +
Sbjct: 2 AITVTPLAGSGRVNTEERNTGEPFCYLLEIEDARILLDCGSRDWEANDESAFYYEKKLRE 61
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR---- 106
+A TID VLLSH T H G YA GL P + + PV L L+ + + R
Sbjct: 62 IAPTIDLVLLSHASTKHSGFYAYAYTHYGLKCPAYCSLPVKELARLSTLEDIIGWRGERD 121
Query: 107 ------------------------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142
SV + Y Q HL GK G+ + + +GH LGGT+W
Sbjct: 122 IEGLHNDDELWCVPTREENRAAWTSVKDVRYHQPQHLYGKLRGVTITAYSSGHTLGGTLW 181
Query: 143 KITKDG-EDVIYAVDYNRRKEKHLNGTVL-----------ESFVRPAVLITDAYNALHNQ 190
KI ++YAV N KE+HL+GT L E VRP ++ITD+
Sbjct: 182 KIRAPSVGTILYAVGINHMKERHLDGTALIRGDQGGLTVHEQLVRPGLVITDSERGDCVN 241
Query: 191 PPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA-----EHSLNYPIY 244
R+ R+ D I++TL++G ++LLP D R+LELL++L+ +W + S P+
Sbjct: 242 AKRKDRDAALLDIINRTLQSGNSLLLPCDPTSRILELLVLLDQHWTYIRDKDPSFRIPLC 301
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----------FLLKHVTLLINKSEL 294
++ + + +V+ +E+ G + T + + SR+ A K + + + L
Sbjct: 302 LISNTGTDMLKFVRGLMEFFGGA-TAAGDNSREEAERRYKENRGVLDFKTLNIFTSVDAL 360
Query: 295 DNA-PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML------- 346
+ A P PKLVLA S+ G S +F ++++ N ++ T RG G+LAR L
Sbjct: 361 EAAYPGTPKLVLAVPYSMSYGGSRRLFHSFSNNPGNAIVLTSRGAPGSLARDLFDRWNGK 420
Query: 347 -----------QADPPPKAVKVTMSRRVPLVGEELIAYE-EEQTRLKKEEALKASLVKEE 394
+A + +T +VPL+GEEL AY+ E+ ++E A +A+ +
Sbjct: 421 QNDKWGSGKLGEAVQGDWNIPITEHSKVPLLGEELEAYQATERINREQEAARQAADSRRR 480
Query: 395 E-----------------SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 437
+S D+ + + N + DI +
Sbjct: 481 RMMEADAQEEDDEEDDFEGDSSSDEDDKVVEKEEQQKEEDGNGLQQIS-------YDIYL 533
Query: 438 DG--------FVPPSTSVAP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI 486
G F + AP MFPF + + D +GEVI+ + ++ + ++++ A+
Sbjct: 534 KGHSTRGATSFFKSAQGSAPRFRMFPFNDIKRKMDSYGEVIDAESWVSRGRELERQAIEQ 593
Query: 487 GGDD----GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 542
+ K++E + + L+ PSK +S + V V C +++ID EG D R+IK I+
Sbjct: 594 DQEHEAKRRKMEEEADATPLEP-PSKYISENVEVGVNCQVMYIDLEGLNDSRAIKNIMPR 652
Query: 543 VAPLKLVLVHGSAEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 600
+ P K++LV G+ ++ L + + +Y P + ETI + +Y L + L+
Sbjct: 653 LNPRKMILVGGTQTSSNSLINAFEAISAMTKDIYVPNMGETIKIGEHTHSYTFTLGDSLV 712
Query: 601 SNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH------KSVLVGDLKMADLK 654
+NV D+ + ++ E ++ ++T A S+ +GD+K+ LK
Sbjct: 713 NNVHMAPFEDFVVGHAIGKMAYHEEALVPTFEVATSAAQETTANVPTSLYIGDMKLTSLK 772
Query: 655 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA---GQKGGGSGTQQIVIEGPLCEDYYKI 710
L G+ EF G G L C + + A KG + T ++ +G + YY +
Sbjct: 773 AKLVGLGLSAEFGGEGVLVCWNEMNSEEGAVAISKNSKGELNMTSSLIGDGDI---YYTV 829
Query: 711 RAYLY 715
R +Y
Sbjct: 830 RDAVY 834
>gi|392568293|gb|EIW61467.1| hypothetical protein TRAVEDRAFT_162694 [Trametes versicolor
FP-101664 SS1]
Length = 943
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 212/772 (27%), Positives = 343/772 (44%), Gaps = 168/772 (21%)
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHL 165
SV L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +E+HL
Sbjct: 181 SVNVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPSAGTILYAVDMNHMRERHL 240
Query: 166 NGTVL----------ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVL 214
+GTVL ES RP +LITDA A R+ R+ D ++ TL + ++L
Sbjct: 241 DGTVLIRQGSTGGVFESLARPDLLITDAERANVTTARRKDRDSALLDCVTATLSSRNSLL 300
Query: 215 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
LP DS+ RVLELL++L+ +W L YPI L+ + +V+S +EW+G +I+K +
Sbjct: 301 LPCDSSTRVLELLVLLDQHWNYSRLKYPICLLSRTGREMLTFVRSMMEWLGGTISKE-DV 359
Query: 275 SRDN----------------------AFLLKHVTLLINKSELDN--APDGPKLVLASMAS 310
D A +H+ + L + + PKL+LA A+
Sbjct: 360 GEDGTNHGRDRRRRDEDNDEEALGAFALRFRHLEFFSSPQALMSTYSTKDPKLILAVPAT 419
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP----------- 352
L G S +F +A N+VL T R + GTL R+L Q +
Sbjct: 420 LSHGPSRSLFAHFAEIPDNVVLLTGRSEPGTLGRILFDKWNNSQREEAKWDRGKIGNNIM 479
Query: 353 --KAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES------------- 396
+++ + ++VPL G+EL + +E+ +KE A +A+L + +
Sbjct: 480 MDGVLRLEIHKKVPLQGDELEEFLAKERAVKEKEAAHQAALARTQRMLEADEGQSDSDSD 539
Query: 397 -------------KASLGPDNNLSGDPMVIDANNANAS-----------------ADVV- 425
+ LG D + D + NA+ D V
Sbjct: 540 DEDESDDDEEDEVERELGEDLMDATDDLKRSRQGPNATTRSGTKRKRGEGGGGDGTDWVL 599
Query: 426 --EPHGGRYR---DILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPD 470
E G R DI + G V +TS MFP+ E + D++GE ++
Sbjct: 600 GNEADEGATRISFDIYLKGNVAKATSFFKSADGQTQRFRMFPYVEKKRKVDEYGETVDVG 659
Query: 471 DYIIKDEDMDQAAMHIGGDDGKL--DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 528
++ K + +++ A D + +E A PSK V++ VQ+ C L F+D E
Sbjct: 660 TWLRKGKVLEEDAEDEETKDARRRKEEEEAKKAPQEPPSKFVTSIAEVQLACRLFFVDLE 719
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTS 586
G DGR++KTI+ V P K++L+H AT+ L + C ++ + +Y P ET+ +
Sbjct: 720 GLNDGRAVKTIVPQVNPRKMILIHAPQAATDALIESCANIRAMTKEIYAPAQGETVQIGQ 779
Query: 587 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGML----------------SL 630
++ + LS++L++++ + D E+ +V + M+ SL
Sbjct: 780 QTNSFSISLSDELLASIKMSRFEDNEVGYVAGRIASLATSMIPVLQPASSASLQTQAASL 839
Query: 631 LPI------STPAPP-HKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-------- 674
P+ S P P +S ++G+LK+ LK L+ G+Q E G G L CG
Sbjct: 840 QPVQVRMLGSRPKQPLPQSTMIGELKLTSLKARLAQVGVQAELVGEGVLICGAAAKKGAS 899
Query: 675 -----EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ V +RK G ++ +EG + + YYK+R +Y+ L+
Sbjct: 900 ADALEDSVAVRKTGRG----------RVELEGSISDIYYKVRKEIYALHALV 941
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCGWNDHF-DPS------------LLQPL 48
+ TPLSG PL+YL+ +D L+DCG D +PS L
Sbjct: 2 ITFTPLSGAAGTVRTVPLAYLLQVDDVRILLDCGSPDWCPEPSSEEGDDVLSWTKYCDAL 61
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
+ A ++D VLLSH D H G PYA GL+AP ++T P+
Sbjct: 62 KECAPSVDLVLLSHGDLSHSGLYPYAYSHWGLTAPAYTTLPI 103
>gi|119601889|gb|EAW81483.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_c [Homo sapiens]
Length = 690
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/284 (45%), Positives = 182/284 (64%), Gaps = 23/284 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 261
GRVLEL +L+ W +Y L VS + +++ KS L
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQL 284
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 95/385 (24%)
Query: 415 ANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEV 466
++ ++ D+ +P + + D+++ G F + PMFP E +WD++GE+
Sbjct: 323 SDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEI 382
Query: 467 IN-----PDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTV 516
I P+D+++ +E+ + + D +D+ + + P+K +S ++
Sbjct: 383 IKDLLFRPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESI 437
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPH 572
++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K +
Sbjct: 438 EIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--K 495
Query: 573 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML 628
VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 496 VYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVI 555
Query: 629 -----------------------------------------------SLLPISTPAPP-- 639
++P P PP
Sbjct: 556 LEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHE 615
Query: 640 ---HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQ 696
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T +
Sbjct: 616 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGR 665
Query: 697 IVIEGPLCEDYYKIRAYLYSQFYLL 721
I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 666 IGLEGCLCQDFYRIRDLLYEQYAIV 690
>gi|444714932|gb|ELW55806.1| Cleavage and polyadenylation specificity factor subunit 2 [Tupaia
chinensis]
Length = 723
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 182/284 (64%), Gaps = 23/284 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 261
GRVLEL +L+ W +Y L VS + +++ KS L
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQL 284
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 163/340 (47%), Gaps = 80/340 (23%)
Query: 415 ANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEV 466
++ ++A DV +P + + D+++ G F + PMFP E +WD++GE+
Sbjct: 323 SDESDAEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEI 382
Query: 467 INPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 521
I P+D+++ +E+ + + D +D+ L P+K +S ++++K
Sbjct: 383 IKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQD-----LSDVPTKCISTTESIEIKAR 437
Query: 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQ 577
+ +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P+
Sbjct: 438 VTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPK 495
Query: 578 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----- 628
+ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 496 LHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGE 555
Query: 629 ------------------------------------------SLLPISTPAPP-----HK 641
++P P PP H+
Sbjct: 556 LKDDGEDSEMQVDAPSDSSAIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQ 615
Query: 642 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRK 681
SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 616 SVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR 655
>gi|432115811|gb|ELK36959.1| Cleavage and polyadenylation specificity factor subunit 2 [Myotis
davidii]
Length = 687
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 167/561 (29%), Positives = 277/561 (49%), Gaps = 111/561 (19%)
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 261
+TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS + +++ KS +
Sbjct: 143 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQV 202
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+F+
Sbjct: 203 EWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFI 261
Query: 322 EWASDVKNLVLFTERGQFGTLARMLQADPPP----------KAVKVTMSRRVPLVGEELI 371
+W D KN ++ T R GTLAR L +P P K ++ + +RV L G+EL
Sbjct: 262 QWCEDPKNSIILTYRTTPGTLARFLIDNPLPHPSPSLHFAEKVTEIELRKRVKLEGKELE 321
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR 431
Y L++E+ K + K E+SK + + ++ ++ D+ +P +
Sbjct: 322 EY------LEREKLKKEAAKKLEQSKEA-----------DIDSSDESDVEEDIDQPSAHK 364
Query: 432 YR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDED 478
+ D+++ G F + PMFP E +WD++GE+I P+D+++ +E+
Sbjct: 365 TKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEE 424
Query: 479 MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 538
+ + D +D+ + + P+K +S ++++K + +IDYEGR+DG SIK
Sbjct: 425 KSKLESGLTNGDEPMDQDLSDV-----PTKCISMTESIEIKARVTYIDYEGRSDGDSIKK 479
Query: 539 ILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQ 594
I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+V+
Sbjct: 480 IINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVR 537
Query: 595 LSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML---------------------- 628
L + L+S++ F K D E+AW+D V K + G++
Sbjct: 538 LKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDPPSD 597
Query: 629 -------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLS 658
++P P PP H+SV + + ++ D K L
Sbjct: 598 SSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPNEVPGHQSVFMNEPRLFDFKQVLL 657
Query: 659 SKGIQVEFAGGALRCGEYVTI 679
+ IQ EF GG L C +++
Sbjct: 658 REWIQAEFVGGVLVCNNQISV 678
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 31/185 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSG------KGEG-IVVAPHVAGHLLG-----GTVWKITKDGED 150
+ +L +SQ +L +G+G +++A AG +L +W+ TKD
Sbjct: 121 AAFDKIQQLKFSQIVNLKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWR-TKDAGL 179
Query: 151 VIYAV 155
+Y++
Sbjct: 180 GVYSL 184
>gi|403298151|ref|XP_003939898.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 2 [Saimiri boliviensis boliviensis]
Length = 648
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 164/571 (28%), Positives = 277/571 (48%), Gaps = 111/571 (19%)
Query: 227 LLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
L L+D W +Y L VS + +++ KS +EWM D + + FE R+N F +
Sbjct: 113 LFTLDDIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFR 172
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R GTLA
Sbjct: 173 HLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLA 231
Query: 344 RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPD 403
R L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 232 RFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------------- 277
Query: 404 NNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYE 455
S + + ++ ++ D+ +P + + D+++ G F + PMFP E
Sbjct: 278 ---SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPE 334
Query: 456 NNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 510
+WD++GE+I P+D+++ +E+ + + D +D+ + + P+K +
Sbjct: 335 ERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCI 389
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---- 566
S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 390 STTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGG 449
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGK 622
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K
Sbjct: 450 KDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSK 507
Query: 623 TENGML-----------------------------------------------SLLPIST 635
+ G++ ++P
Sbjct: 508 VDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDEKETGEESEIIPTLE 567
Query: 636 PAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 690
P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 568 PLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--------- 618
Query: 691 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 619 -TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 648
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLT 112
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR + T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFT 112
>gi|159465769|ref|XP_001691095.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279781|gb|EDP05541.1| predicted protein [Chlamydomonas reinhardtii]
Length = 389
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 225/391 (57%), Gaps = 47/391 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M T V+ TPL GV ++PL L+ ID + L+DCGW+D FD +LL P+ KV IDAVLL
Sbjct: 1 METVVRYTPLCGVGEDSPLCSLLEIDDYTILLDCGWDDSFDVALLDPVLKVLPRIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SHP HLG+LPY + + GL+APVFST+P R+G + M++ L+ ++V
Sbjct: 61 SHPSPAHLGSLPYLVGRCGLAAPVFSTKPTRRMGEMFMFEACLAHQAVSDFAAYDLDDVD 120
Query: 109 ---------TRLTYSQNYHL--------------SGKGEGIVVAPHVAGHLLGGTVWKIT 145
T L YSQ + L G GI + P AG GG VW++T
Sbjct: 121 AGFRLHPRWTELRYSQKHLLLPPAAPAGAAGGGQGPAGGGIAITPLPAGRYPGGAVWRLT 180
Query: 146 --KDGEDVIYAVDYNRRKEKHLNGTVLES---FVRPAVLITDAYNALH-NQPPRQQR-EM 198
G++V+YAVD+N RKE+ LN T + ++PA+LI DA N L PPR +R E
Sbjct: 181 LLGSGQEVVYAVDFNHRKERLLNETTFTTALAALQPALLIGDAVNGLAPPAPPRHKRDEE 240
Query: 199 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTID 255
F DAI+ T+ GNVL+P D+AGRVLEL L+L++++A P+ L+Y + ++
Sbjct: 241 FLDAITATVEGEGNVLIPTDAAGRVLELALLLDEHFARARCVIAATPV-VLSYTIKTVLE 299
Query: 256 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
+ ++ LE++G + ++F R F + + ++ +L P GPK+VLA++ SL+ G
Sbjct: 300 FARTQLEYLGSEMVQAFSHKRTIPFTFRKLAVITRLEDLGAIP-GPKVVLATLPSLDCGP 358
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARML 346
+ + V+WA+ +N ++FTER GTLA L
Sbjct: 359 ARQLLVDWAAAPRNTIIFTERANPGTLAHAL 389
>gi|193786016|dbj|BAG50992.1| unnamed protein product [Homo sapiens]
Length = 644
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 160/554 (28%), Positives = 272/554 (49%), Gaps = 108/554 (19%)
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
Y + L VS + +++ KS +EWM D + + FE R+N F +H++L S+L P
Sbjct: 126 YSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-S 184
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ +
Sbjct: 185 PKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELR 244
Query: 361 RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 420
+RV L G+EL Y E++ K+ S + + ++ ++
Sbjct: 245 KRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDI 287
Query: 421 SADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 472
D+ +P + + D+++ G F + PMFP E +WD++GE+I P+D+
Sbjct: 288 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 347
Query: 473 II-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 527
++ +E+ + + D +D+ + + P+K +S ++++K + +IDY
Sbjct: 348 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDY 402
Query: 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETID 583
EGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P++ ET+D
Sbjct: 403 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVD 460
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----------- 628
TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 461 ATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGE 520
Query: 629 ------------------------------------SLLPISTPAPP-----HKSVLVGD 647
++P P PP H+SV + +
Sbjct: 521 DSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNE 580
Query: 648 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 707
+++D K L +GIQ EF GG L C V +R+ + T +I +EG LC+D+
Sbjct: 581 PRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDF 630
Query: 708 YKIRAYLYSQFYLL 721
Y+IR LY Q+ ++
Sbjct: 631 YRIRDLLYEQYAIV 644
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLT 112
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR + T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFT 112
>gi|10241720|emb|CAC09445.1| hypothetical protein [Homo sapiens]
Length = 504
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 156/539 (28%), Positives = 264/539 (48%), Gaps = 108/539 (20%)
Query: 256 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
+ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GF
Sbjct: 1 FSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGF 59
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E
Sbjct: 60 SRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLE 119
Query: 376 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-D 434
++ K+ S + + ++ ++ D+ +P + + D
Sbjct: 120 KEKLKKEAAKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSAHKTKHD 162
Query: 435 ILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQA 482
+++ G F + PMFP E +WD++GE+I P+D+++ +E+ +
Sbjct: 163 LMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKL 222
Query: 483 AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 542
+ D +D+ + + P+K +S ++++K + +IDYEGR+DG SIK I++
Sbjct: 223 ESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQ 277
Query: 543 VAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEK 598
+ P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+V+L +
Sbjct: 278 MKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDS 335
Query: 599 LMSNVLFKKLGDYEIAWVDA----EVGKTENGML-------------------------- 628
L+S++ F K D E+AW+D V K + G++
Sbjct: 336 LVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVI 395
Query: 629 ---------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGI 662
++P P PP H+SV + + +++D K L +GI
Sbjct: 396 AQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGI 455
Query: 663 QVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
Q EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 456 QAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 504
>gi|164663111|ref|XP_001732677.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
gi|159106580|gb|EDP45463.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
Length = 862
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 217/834 (26%), Positives = 365/834 (43%), Gaps = 152/834 (18%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHF----DPSLLQP------------LSKVASTIDAVLLSH 62
LSYL+ ID L+DCG + D L Q L ++ TID VLL+H
Sbjct: 36 LSYLLEIDQCRILLDCGAPEDLTFVDDTQLKQEGSHVWRGTLPDILERIGPTIDVVLLTH 95
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS--------------- 107
+ HLG YA GL PV++T PV +G L M + S R+
Sbjct: 96 AEMSHLGLYAYAYANYGLQCPVYATLPVQTMGRLQMLEIVRSWRAEVDANLTSSKSEANS 155
Query: 108 ------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDG 148
+ L Y + L GK G+V+ + AGH LGGTVWK+ +
Sbjct: 156 GLKRYIPTEAQVDDAFDAIRPLRYLEPTPLDGKCAGLVLTAYNAGHSLGGTVWKLRSPTV 215
Query: 149 EDVIYAVDYNRRKEKHLNGTVL----------ESFVRPAVLITDAYNALHNQPPRQQREM 198
++ A+D+N +E+HL+GT L + RP VLITD L R+ R+
Sbjct: 216 GTIVMALDWNHHRERHLDGTALLSVGAAAPLAHAIGRPDVLITDIERGLFTNARRKDRDA 275
Query: 199 -FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTI 254
I +TL +G +VL+PVDSA R+LE+L++L+ +WA +H +P+ +++ +
Sbjct: 276 ALLSQIHRTLTSGHSVLIPVDSAARLLEILVLLDQHWAFSYQHQ-RFPLCLVSHTGQEVV 334
Query: 255 DYVKSFLEWMGDSITKSFETSRDNAFL--------------------LKHVTLLINKSEL 294
+ ++F+EWM + + + + + L
Sbjct: 335 ERARTFMEWMSREWAIQLLDAPEASSRRKTTSSSSSSSAATAKSPLDFSGLRFYSSVEAL 394
Query: 295 DNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML------ 346
A P K+VLA+ +L G S + E+ D L++ T RG +L R L
Sbjct: 395 HQALTPSQVKVVLATPPALSHGLSRQLLPEFLCDPDALLILTSRGTPSSLVRNLWDRWNA 454
Query: 347 -QADPP---------PKAVKVTMS----RRVPLVGEELIAY-EEEQTRLKKEEALKASLV 391
QAD P +V +S RRVPL G+EL Y E ++ R +A +A +
Sbjct: 455 KQADRDAWRQGHVGVPVSVGGQLSYELRRRVPLAGDELRTYVERQKAREAAADAPRARIQ 514
Query: 392 KEEESKASLGPDN----------NLSGDPMVIDANNANA--------SADVVEPHGGRYR 433
+ + + D+ G P + + A +A EP G +
Sbjct: 515 QPQREADDVDDDDASSSDSSSDDEFDGQPSRLPSTRTIAPERAQMQLNAAAPEPVGMSF- 573
Query: 434 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL 493
DI + G V MFP E + D +GE I+ ++ + ++ +
Sbjct: 574 DIFLRGQVSRDAVHYRMFPHIERKRKVDGYGESIDTSRWLARRRRLEAEQEEQLNPERLK 633
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+ + +D P K S+ L V+C ++++D +G DGR++ T++ + P +L++V+G
Sbjct: 634 PQKKRTRPVDV-PCKYTSDTLNAAVRCHVLYVDLQGLNDGRALTTLVPQLQPRRLIMVNG 692
Query: 554 SAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 613
T ++ + +YTP + +T+ V +Y V+L + LM ++ + + DY I
Sbjct: 693 DEATTLAVRAKLSR--THDLYTPDLGQTVSVGGLSNSYSVRLGDALMGSLRWHPMQDYNI 750
Query: 614 AWVDAEVG-KTENGMLSLLPISTPAPPH-----KSVLVGDLKMADLKPFLSSK-GIQVEF 666
+ +++ +L+P++ A H ++ +GDL++ LK +L+ + I+ +F
Sbjct: 751 VHLHVSPDFASDSDTPTLVPVNDAATVHTAQAPSTLYIGDLRLPALKAYLARQHRIRADF 810
Query: 667 AG-GALRCGEY----VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
AG G L CG+ VT+ K GT +IV+EG L + ++R +Y
Sbjct: 811 AGEGVLVCGDRDERNVTVTK----------QGTGRIVVEGSLSTNLARVRQSIY 854
>gi|396500483|ref|XP_003845730.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
gi|312222311|emb|CBY02251.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
Length = 954
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 238/946 (25%), Positives = 365/946 (38%), Gaps = 243/946 (25%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +P S L+ DG L+D GW++ FD L+ + K TI +LL+H T
Sbjct: 5 TPLLGALTSSPASQSLLEFDGGIQILVDIGWDESFDVEKLKEIEKHVPTISLILLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T+PV LG + D Y S
Sbjct: 65 AHLGAYVHCCKNFPLFTRIPVYATKPVISLGRTLLQDLYASSPLASSIIPNQTLNESAYT 124
Query: 106 ---------------------------RSVTRLTYSQNYH-----LSGKGEGIVVAPHVA 133
+ L YSQ + S G+ + + A
Sbjct: 125 FSTGLIAGHDPNILLQAPTPEEIGEYFARINPLRYSQPHEPLLAPHSPPPNGLTITAYSA 184
Query: 134 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLIT 181
GH LGG++W I E V+YAVD+N+ E L+G VL+ RP LI
Sbjct: 185 GHTLGGSIWHIQHGMESVVYAVDWNQATEHVLSGAAWLGGPGAGGSEVLKQLRRPTALIC 244
Query: 182 DAYNA---LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
+ +PP ++ E + +T+ GG+VL+P DS+ R+LEL +LE+ W S
Sbjct: 245 SSKGTELVKVARPPSKRDEALLALVRETVANGGSVLIPSDSSARILELAYLLEETWQRDS 304
Query: 239 LN---------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS------RDNA---- 279
+N +Y + +T+ Y +S LEWM + I K FE + +D++
Sbjct: 305 INSDGDSPLKSAKVYLASRTGGATMRYARSMLEWMEEGIVKEFEVASGANNGKDDSKAAR 364
Query: 280 --FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
F KH+TLL K+ + A GP+++LAS +LE GFS D ASD KNL+L TE
Sbjct: 365 VPFDFKHITLLERKTRVARMLATSGPRVILASDTTLEWGFSKDAIKSLASDEKNLILLTE 424
Query: 336 RG-----QFGTLARML----------QADPPPKAVKVTMS---------RRVPLVGEELI 371
R Q +L R L + P A V S R V L G EL
Sbjct: 425 RAGEPSSQKKSLGRYLWDLWHERSAASSHEAPSATVVDASGDNAPVCNIRAVSLEGNELS 484
Query: 372 AYE-------EEQTRLKKEEA----LKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 420
Y+ + Q + E A + +V + S S D SGD A NA
Sbjct: 485 LYQQYLASQRQRQNTMGGESAVMLEMPTDVVDDRSSTESESSDG--SGDGYRGKALNATV 542
Query: 421 SADVVEPHGGR-----------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINP 469
+ G R + D V +FPF DDFGE+I
Sbjct: 543 ALQHARNKLGLTDAELGVKVLVQRKNIYDFEVQGKKGKDKVFPFQRKKKRADDFGELIRA 602
Query: 470 DDYIIKDEDMDQAAMHIGGD---------------------DGKLDEGSASLILDAK--- 505
+D+ +E+ + A + G+ DG G+ D +
Sbjct: 603 EDFARVEEEDNVAGEALRGEGTKKENTVGQKRRWDDLVNVVDGSKPSGALKRRKDGEERG 662
Query: 506 --------------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 545
PSKV+ ++++C + F+D+ G D R+I+ +L + P
Sbjct: 663 DGDDAESESEPEEDPDKVTGPSKVIIESQNIELRCRIAFVDFSGLHDRRTIQQLLPLIRP 722
Query: 546 LKLVLVHGSAEATEHLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSE 597
KL+ V G E T+ L Q + + V+TP I TI+ + D A+ V+LS
Sbjct: 723 RKLIFVGGEEEETKELAQLIRESLNASGEAGTAIDVFTPSIGLTINASVDTNAWTVKLSR 782
Query: 598 KLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLP--------------------ISTPA 637
++ N+ ++ + ++ A G+ L P + PA
Sbjct: 783 NMVRNLRWQNIRGVDVV---AITGRLAAANLDTNPTTTDGDDDEGEDTPAKKKARLDAPA 839
Query: 638 PPHKSVL---------------------------VGDLKMADLKPFLSSKGIQVEFAG-G 669
P S + VGDL++ADL+ +++ + EF G G
Sbjct: 840 IPVSSQIDNDTTPILDVVPANMATAVRSVAQPFHVGDLRLADLRKLMNAADMHAEFRGEG 899
Query: 670 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L V +RK + G + +++++ +Y
Sbjct: 900 VLVVNGTVAVRKTATGQIEVDGGAYGNVDARNSDVATFWRVKRQIY 945
>gi|169599735|ref|XP_001793290.1| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
gi|160705309|gb|EAT89422.2| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
Length = 957
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 234/919 (25%), Positives = 362/919 (39%), Gaps = 264/919 (28%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD + L+ + + ST+ VLL+H T HLGA + K L PV
Sbjct: 26 GIKILIDVGWDESFDVAKLKEIERHVSTLSFVLLTHATTAHLGAYVHCCKNFPLFSRVPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------------------------- 105
++T PV LG + D Y S
Sbjct: 86 YATVPVISLGRTLLQDLYASTPLASSILPTDALTESAYSFPSALKGGKNPNILLQAPTQE 145
Query: 106 ------RSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
++T L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIANYFGAITPLRYSQPHQPIPSSFSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 155 VDYNRRKEKHLNGT-----------VLESFVRPAVLITDAYNA----LHNQPPRQQREMF 199
VD+N+ +E L+G VLE RP +I + N+ + P ++ E+
Sbjct: 206 VDWNQAREHVLSGAAWLGTGTGGSEVLEQLRRPTAMICSSKNSGLVKVAKAPSKRDEELL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW----AEHSLNYPI-----YFLTYVS 250
I T+ GG+VL+P DS+ R+LE+ +LE W A N P+ Y +
Sbjct: 266 S-MIRDTVAKGGSVLIPCDSSARILEIAYLLEKSWHSETARSENNSPLKNAKAYLASRTG 324
Query: 251 SSTIDYVKSFLEWMGDSITKSFETS-----------------RDNA------FLLKHVTL 287
+T+ YV+S LEWMG+ I K FE + RD+ F +H+TL
Sbjct: 325 GATMRYVRSMLEWMGEGIVKEFEAASGAAEGQGQRNVRGAPGRDDGRGIRTPFDFQHITL 384
Query: 288 LINKSELD---NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT-- 341
L K+ + NA + P+++LAS SLE GFS D ASD KNLV+ TER G+ GT
Sbjct: 385 LEKKARVTRMLNATE-PRVILASDTSLEWGFSKDAIRSLASDEKNLVILTERVGELGTQE 443
Query: 342 --LARML-------------------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 380
L R L D + ++ R V L G+E+ Y Q L
Sbjct: 444 KGLGRYLWDLWNERSVNSGDDSLDSTMVDVSGQQASISTVRTVALEGDEVPLY---QQFL 500
Query: 381 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR--------- 431
++ L ++ + +L ++ D + ++ SAD HGG+
Sbjct: 501 ARQRQLHNTMTG--DGGTTLETSADVVDDRSSTTSESSEESAD---GHGGKILNTTAALQ 555
Query: 432 -------------------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 472
R + D V +FP + + DDFG++I P+++
Sbjct: 556 HARNKLGLTDAELGVNILIRRKNVYDYEVRGKKGKEKLFPHQQKRRKQDDFGDLIRPEEF 615
Query: 473 IIKDEDMDQAAMHIGG----------------------DDGKLDEGSASLILDAK----- 505
DE+ + + G D K E LD
Sbjct: 616 ARADEEDNVGGDTLRGESTKKENTVGQKRRWDDLVNVIDSSKTKEKQRRRKLDGDDQGDT 675
Query: 506 ------------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 547
P+KV+ + ++++C + F+D+ G D R+I+ I+ V P K
Sbjct: 676 EMAESDSEPEDDPDKVDGPTKVIIDSEIIELRCQISFVDFSGLHDRRTIQNIIPLVKPRK 735
Query: 548 LVLVHGSAEATEHLKQHCLKHV--------CPHVYTPQIEETIDVTSDLCAYKVQLSEKL 599
L+L+ G T L + C + V+TP I +D + D A+ V+LS +
Sbjct: 736 LILIGGEEAETMELAEICRTALNVGLEASAAIDVFTPTIGIVVDASVDTNAWTVKLSRTM 795
Query: 600 MSNVLFKKL---------GDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVL------ 644
+ N+ ++ + G A +DA + E + PA P S+L
Sbjct: 796 VRNLHWQNVRGMGVVAITGRLAAATLDAPPKEEEGSAKKKARLDAPAVPVSSLLESSSTP 855
Query: 645 ---------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
VGDL++ADL+ + S G++ EF G G L V +RK
Sbjct: 856 ILDVVPANMATAVRSVAQPFHVGDLRLADLRKLMKSNGMEAEFRGEGVLVINGTVAVRK- 914
Query: 683 GPAGQKGGGSGTQQIVIEG 701
+ T QI ++G
Sbjct: 915 ---------TATGQIEVDG 924
>gi|119601887|gb|EAW81481.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_b [Homo sapiens]
Length = 496
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 260/529 (49%), Gaps = 104/529 (19%)
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
M D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+F++W
Sbjct: 1 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQW 59
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE 383
D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 60 CQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEA 119
Query: 384 EALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG--- 439
S + + ++ ++ D+ +P + + D+++ G
Sbjct: 120 AKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGS 162
Query: 440 ----FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGK 492
F + PMFP E +WD++GE+I P+D+++ + + +++ + G +G
Sbjct: 163 RKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG- 221
Query: 493 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 552
DE + D P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VH
Sbjct: 222 -DEPMDQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVH 279
Query: 553 GSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 608
G EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K
Sbjct: 280 GPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKA 337
Query: 609 GDYEIAWVDA----EVGKTENGML------------------------------------ 628
D E+AW+D V K + G++
Sbjct: 338 KDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLF 397
Query: 629 -----------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALR 672
++P P PP H+SV + + +++D K L +GIQ EF GG L
Sbjct: 398 GDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLV 457
Query: 673 CGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
C V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 458 CNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 496
>gi|349604123|gb|AEP99763.1| Cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 281
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/280 (42%), Positives = 168/280 (60%), Gaps = 24/280 (8%)
Query: 94 GLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGH 135
G + MYD Y SR + + +L +SQ +L GKG G+ + P AGH
Sbjct: 1 GQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGH 60
Query: 136 LLGGTVWKITKDGED-VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ 194
++GGT+WKI KDGE+ ++YAVD+N ++E HLNG LE RP++LITD++NA + QP R+
Sbjct: 61 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 120
Query: 195 QR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVS 250
QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS
Sbjct: 121 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVS 180
Query: 251 SSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 310
+ +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPD 239
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
LE GFS D+F++W D KN ++ T R GTLAR L +P
Sbjct: 240 LECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 279
>gi|302694097|ref|XP_003036727.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
gi|300110424|gb|EFJ01825.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
Length = 913
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 204/731 (27%), Positives = 331/731 (45%), Gaps = 123/731 (16%)
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHL 165
SV L YSQ HL GK +GI + P AGH LGGT+WKI + ++YAV+ N +E+HL
Sbjct: 178 SVNVLRYSQPCHLQGKCQGITITPFNAGHTLGGTIWKIRSPSSGTILYAVNMNHMRERHL 237
Query: 166 NGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
+GTVL E RP + ITDA A R+ R+ D ++ L + ++LLP
Sbjct: 238 DGTVLIRQAGGIFEPLARPDLFITDADRANVITSRRKDRDASLIDTVTTALSSRSSLLLP 297
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS----- 271
DS R+LELL++L+ +W L YPI ++ + +V+S +EW+G +I+K
Sbjct: 298 CDSGTRLLELLVLLDQHWNYSRLRYPICLVSRTGREMLTFVRSMMEWLGGTISKEDVGED 357
Query: 272 ----------FETSRDN------AFLLK--HVTLLINKSEL--DNAPDGPKLVLASMASL 311
DN AF L+ H+ L + PKL+LA +L
Sbjct: 358 GMKGRHGNKRKRADDDNDEDALGAFALRFQHLEFFPTPQALLQTYSSKDPKLILAVPLNL 417
Query: 312 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPPPKAVKV------ 357
G S IF E+A+ N++L T+RG GTLAR L +A+ KV
Sbjct: 418 SHGPSRSIFSEFAAIPDNVILLTQRGDPGTLARALFEKWNDSQRAEAKWDKGKVGSNVML 477
Query: 358 ------TMSRRVPLVGEELIAYEEEQ------------TRLKKEEALKASLVKEEESKAS 399
M R+VPL G+EL AY ++ + + L+A E S
Sbjct: 478 DDNLTLKMRRKVPLQGDELEAYLAKERAAKEKEAAQQAAAARNQRMLEADEGDSESDSDS 537
Query: 400 L----GPDNNLSGDPMVIDANNANASADVVEPHGGRYR-------DILIDGFVPPSTSVA 448
+ + + M +DA AD G DI + G V +TS
Sbjct: 538 DGEDDASEKAFNEEVMDLDAERRKGEADWAGLDGDDEHPKQLVSFDIYLKGNVSKATSFF 597
Query: 449 P-----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL---D 494
MFP+ E D++GE ++ ++ K + ++ A + + +
Sbjct: 598 RNAGAAAQQRFRMFPYVEKKRRVDEYGETVDVGMWLRKGKVFEEEAESEEVKEARRKQQE 657
Query: 495 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
E A + PSK V E+ VQ+ C L+F+D EG D R++KTI+ V P K+++VH +
Sbjct: 658 EEEAKKAILEPPSKFVETEVEVQMACRLLFVDMEGLNDSRAVKTIVPKVNPRKMIIVHAT 717
Query: 555 AEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
++A + L + C ++ + +Y P+ +++ + ++ + +S++L++++ + D E
Sbjct: 718 SDAADSLIESCGNIQAMTKDIYAPEFGQSVQIGQQTSSFSISISDELLASLRMSRFEDNE 777
Query: 613 IAWVDAEVGKTENGML-------------SLLPISTP--------APPHKSVLVGDLKMA 651
+ ++ V +L + LP+ P A +S ++G+LK+
Sbjct: 778 VGYITGRVVMHATTLLPTLEPAAKTAAAATRLPLRAPRVLGSRPAAQLPRSTMIGELKLT 837
Query: 652 DLKPFLSSKGIQVEFAG-GALRCGEYVTIRK---VGPAGQKGGGSGTQQ--IVIEGPLCE 705
LK L+ G+ E G G L CG VT RK P + T + + +EG + E
Sbjct: 838 ALKARLAQVGVHAELVGEGVLICG--VTHRKGDGADPLAESVAVRKTARGNVEMEGNVSE 895
Query: 706 DYYKIRAYLYS 716
YY +R +Y+
Sbjct: 896 TYYAVRKEIYN 906
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 8 TPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSLLQP-------------L 48
TPL+G N PL +++ +D L+DCG W+ S ++ L
Sbjct: 5 TPLAGAACSNRTTPLCFILQVDDVKILLDCGSPDWSPEPSTSEVKVEDTSYSWEEYCSIL 64
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
+ A+++D VLLSH D H G PYA + GL A ++T PV
Sbjct: 65 RQHAASVDLVLLSHGDLQHSGLYPYAYSRWGLKAQTYTTLPV 106
>gi|422293869|gb|EKU21169.1| cleavage and polyadenylation specificity factor subunit 2
[Nannochloropsis gaditana CCMP526]
Length = 925
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 188/657 (28%), Positives = 305/657 (46%), Gaps = 101/657 (15%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
G + L GV PL YL+ + L+DCGW+ D +LL+PL V + VLLS
Sbjct: 59 GEGLTFRVLYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLS 118
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR---------------- 105
PD H+GALP+ K L P+++T+PV+++ + +YD YL++
Sbjct: 119 FPDLSHMGALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLYLNKCMDTASGAAGCPAFTL 178
Query: 106 ----RSVTR---LTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKIT-KDGEDVIYAVD 156
++ R L +SQ + +G + V P+ AG +LGG W++ K E+++YAVD
Sbjct: 179 DEVDAAMARFQLLKFSQPLEVRQQGRFYLSVTPYPAGRILGGCFWRVNYKKMEEIVYAVD 238
Query: 157 YNRRKEKHLNGTVLESF--------VRPAVLITDAYNALH-NQPPRQQREMFQDAISKTL 207
+N + E+HL G V E+F RP + ITDA + + + R+ F A + TL
Sbjct: 239 FNLKSERHLTGAV-EAFNALSADKEQRPCLFITDARPSPNLSTDERKVETEFLAAATGTL 297
Query: 208 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMG 265
R GG+VL+PV+++GR ELLL L +W L Y I L +++ + + + KS +E+M
Sbjct: 298 RKGGHVLIPVETSGRAQELLLALNGHWRSDRLLWGYKIVLLHHMARNVLHFTKSMVEYMH 357
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD---GPKLVLASMASLEAGFSHDIFVE 322
+ + F+ S N F LKHV + EL+ A P +VLAS ++ GFS +
Sbjct: 358 PEVIRDFDRSLRNPFSLKHVVPAQSMLELEAAMGEYRNPVVVLASDEGMDTGFSRALATR 417
Query: 323 WASDVKNLVLFTERGQFGTLARML-QADPPPKAVKVTMSRRVP----LVGEELIAYEEEQ 377
WAS +N +L + G+LA + PKA +S VP +VGEEL E++
Sbjct: 418 WASGPENALLLCGHLRKGSLAESFWKLRHLPKA---ALSFSVPVIERIVGEELAGLREKE 474
Query: 378 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN----------ANASADVVEP 427
R ++ +AL+A + + + G + + + A N A++SA +
Sbjct: 475 DR-ERRKALEAEEFRRQAHELMEGTVGAVFSEEQGMLAGNSSNGPLAPLQASSSAKRLRK 533
Query: 428 HGGRYR--DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH 485
YR L+ G P++ E D +GE + + + DE
Sbjct: 534 TAAMYRRPRYLVFGCRDPAS------------VEVDAYGEPLREGECV--DEGNAGGGPQ 579
Query: 486 IGG------------------------DDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 521
G DD + EG A + K + E V+V+
Sbjct: 580 AGTARGLVFQGPGAGGGGGGVQRWGYLDDVLMTEGEAQVRAGTGALKFLMRESVVEVRWR 639
Query: 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV--CPHVYTP 576
+ EGR+DG++++ IL+++AP ++ V G+ E+ L H K + ++TP
Sbjct: 640 VRAFPMEGRSDGKNLRAILTNLAPRNIIFVRGTPESFTDLTLHAGKMLGSSTRLWTP 696
>gi|189192102|ref|XP_001932390.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973996|gb|EDU41495.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 954
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 222/912 (24%), Positives = 351/912 (38%), Gaps = 253/912 (27%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F+ L+ + + TI +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR---------RSVTRLTYSQNYHLSGKGE----------- 124
++T PV LG + D Y S ++ YS + L G
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGNNPNILLQAPTSQ 145
Query: 125 ------------------------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHEPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 155 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA---LHNQPPRQQREMF 199
VD+N+ +E L+G VLE P LI N + P ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSTKNTGMVKKARSPNERDEAL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---------NYPIYFLTYVS 250
+ I T+ GG VL+P DS+ R+LEL +LED W +Y +
Sbjct: 266 LEMIRNTISNGGTVLIPSDSSARILELAYLLEDTWEREVTEGDGSGPLSTTKLYLASRTG 325
Query: 251 SSTIDYVKSFLEWMGDSITKSFETSRDNA-----------------FLLKHVTLLINKSE 293
+T+ YV+S LEWM + I K FE S + F +H+TLL K+
Sbjct: 326 GATMRYVRSMLEWMEEGIVKEFEASAADQDRRTKEGQEEERVAKVPFDFRHITLLERKTR 385
Query: 294 LDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT----LARML 346
+ A GP+++LAS A+LE GFS D ASD KNLV+ TER G+ G+ L R L
Sbjct: 386 VARMLAGAGPRVILASDATLEWGFSKDAIRSLASDEKNLVILTERSGELGSQKKGLGRYL 445
Query: 347 -----------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
D P V + PL +A + ++ L ++ L + +
Sbjct: 446 WDLWNQRNASPGEDAPSTTVIDASGNQAPLDTVRTVALQGDEVPLYQQ-----FLASQRQ 500
Query: 396 SKASLGPDNN--LSGDPMVIDANNANA----------------SADVVEPHGGR------ 431
+ ++G DN L V+D ++ +A V H
Sbjct: 501 RQTTMGGDNAAMLETSADVVDDRSSTESESSEGSGDGYRGKALNATVALQHARNKLGMTD 560
Query: 432 ---------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA 482
R + D V MFPF DDFG++I P+D+ + E+ D A
Sbjct: 561 AELGVNVLIRRKNVYDYEVQGKKGKERMFPFQAKKRRTDDFGDLIRPEDF-ARAEERDNA 619
Query: 483 AMHIGGDDGKLDEGSASL----------------ILDAK--------------------- 505
A DG E + L + K
Sbjct: 620 AGEALRGDGTKKENAVGLKRRWDDLVNTADNTKATANQKRRKDHEGGEGEESESDSEPED 679
Query: 506 -------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 558
P+KV+ T++++C + F+D+ G D R+I++++ + P KL+ + G A T
Sbjct: 680 GPDKVEGPAKVIIESSTLEIRCRIAFVDFSGLHDRRTIQSLIPLIRPRKLIFIGGEASET 739
Query: 559 EHLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 610
L + + + ++TP I +D + D A+ V+LS ++ N+ ++ +
Sbjct: 740 LELAEISRLALNANNDSANAIDIFTPTIGTLVDASVDTNAWTVKLSRNMVRNLRWQNVRG 799
Query: 611 YEIAWV-------------------DAEVGKTENGMLS--LLPISTPAPPHKSVL----- 644
+ + +A+ + L +P+S+ + VL
Sbjct: 800 MGVVAITGRLAAARLEPHSSSTTTEEADTPAKKKARLDAPAIPVSSDKNDNTPVLDVVPT 859
Query: 645 --------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKG 689
VGDL++ADL+ +++ G+Q E+ G G L V +RK
Sbjct: 860 NMATAVRSVAQPFHVGDLRLADLRRLMTANGMQAEYRGDGILVINGSVAVRK-------- 911
Query: 690 GGSGTQQIVIEG 701
+ T QI I+G
Sbjct: 912 --TATGQIEIDG 921
>gi|330920784|ref|XP_003299151.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
gi|311327303|gb|EFQ92764.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
Length = 953
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 219/910 (24%), Positives = 354/910 (38%), Gaps = 250/910 (27%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F+ L+ + + TI +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------------------------- 105
++T PV LG + D Y S
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTSQ 145
Query: 106 ------RSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
++ L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIGDYFARISPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 155 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA---LHNQPPRQQREMF 199
VD+N+ +E L+G VLE P LI + N + P ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSSKNTGMVKKARSPNERDEAL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN---------YPIYFLTYVS 250
+ I T+ GG VL+P DS+ R+LEL +LE+ W +Y +
Sbjct: 266 LEMIRNTVSNGGTVLIPSDSSARILELAYLLEETWEREETQGDGSGPLSTTKLYLASRTG 325
Query: 251 SSTIDYVKSFLEWMGDSITKSFETSRDNA-----------------FLLKHVTLLINKSE 293
+T+ YV+S LEWM + I K FE S + F +H+TLL K+
Sbjct: 326 GATMRYVRSMLEWMEEGIVKEFEASAADQDRRTKGGKEDERVAKVPFDFRHITLLERKTR 385
Query: 294 LDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT----LARML 346
+ A GP+++LAS A+LE GFS D ASD KNLV+ TER G+ G+ L R L
Sbjct: 386 VARMLAGAGPRVILASDATLEWGFSKDAIRTLASDEKNLVILTERSGELGSQKKGLGRYL 445
Query: 347 -----------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
D P V + PL +A + ++ L ++ L + +
Sbjct: 446 WDLWNQRNASPGEDAPSTTVIDASGNQAPLDTIRTVALQGDEVPLYQQ-----FLASQRQ 500
Query: 396 SKASLGPDNN--LSGDPMVIDANNANA----------------SADVVEPHGGR------ 431
+ ++G DN L V+D ++ +A V H
Sbjct: 501 RQTTMGGDNAAMLETSADVVDDRSSTESESSEGSGDGYRGKALNATVALQHARNKLGMTD 560
Query: 432 ---------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA 482
R + D V MFPF DDFG++I P+D+ +E+ + A
Sbjct: 561 AELGVNVLIRRKNVYDYEVQGKKGKERMFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTA 620
Query: 483 AMHIGGDDGKLD-------------------------------EGSASLILDAK------ 505
+ G+ K + EG+ ++
Sbjct: 621 GEALRGEGTKKENAVGQKRRWDDLVNTTDNSKATANQKRRKDREGAEGEEDESDSEPEDD 680
Query: 506 ------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
P+KV+ T++++C + F+D+ G D R+I++++ + P KL+ + G A T
Sbjct: 681 PDKVEGPAKVIIESSTLEIRCRIAFVDFSGLHDRRTIQSLIPLIRPRKLIFIGGEASETL 740
Query: 560 HLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
L + + + ++TP + +D + D A+ V+LS ++ N+ ++ +
Sbjct: 741 ELAEISRLALNANADSANAIDIFTPTVGTLVDASVDTNAWTVKLSRNMVRNLRWQNVRGM 800
Query: 612 EIAWV------------------DAEVGKTENGMLS--LLPISTPAPPHKSVL------- 644
+ + +A+ + L +P+S+ VL
Sbjct: 801 GVVAITGRLAAASLEPHSSSATEEADTPAKKKARLDAPAIPVSSDKNDDMPVLDVVPTNM 860
Query: 645 ------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGG 691
VGDL++ADL+ +++ G+Q EF G G L V +RK
Sbjct: 861 ATAVRSVAQPFHVGDLRLADLRRLMTANGMQAEFRGDGILVINGSVAVRK---------- 910
Query: 692 SGTQQIVIEG 701
+ T QI I+G
Sbjct: 911 TATGQIEIDG 920
>gi|58266278|ref|XP_570295.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. neoformans JEC21]
gi|134111080|ref|XP_775682.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258346|gb|EAL21035.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226528|gb|AAW42988.1| cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 899
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 236/901 (26%), Positives = 382/901 (42%), Gaps = 202/901 (22%)
Query: 5 VQVTPLSGVFNEN----PLSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVAST 54
+ +TPLS E P+ YL+ +D L+D G D+ S + + +A T
Sbjct: 2 ITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASSQQCSWDYEEAVRDLAPT 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------- 107
+ VLLSH + +L PYA + GL+ PV++T+P +G + + S RS
Sbjct: 62 LSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLAEAESWRSECPVDSE 121
Query: 108 -----------------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 138
+ + YSQ HL G +++ P +GH LG
Sbjct: 122 KVAADDGSKKPLRGPFVPTVEEIHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLG 181
Query: 139 GTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALH 188
G+++KI + V+YAV N E+HL+G V + +RP +LI + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGINHTSERHLDGMVGVQNGPTGYADGVLRPDLLIVEGGRSMV 241
Query: 189 NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSL 239
P R++RE D I+ TL + +VLLPVD + R+LEL+++L+ +W +
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFKRTPKVKQRRY 301
Query: 240 N--------YPIYFLTYVSSSTIDYVKSFLEWMG----DSITKSFETSRDN--------- 278
N YP+ ++ + + + +S ++WMG DS + R
Sbjct: 302 NEPPADLWPYPLCIVSKTAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMAL 361
Query: 279 -----AFLLKHVTLLINKSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
+HV +N ++L P PKLVLA ++ G S +F A+ N++
Sbjct: 362 GSEYGVLDFRHVQFFLNTTDLLQTYPLTRPKLVLAVPPTMSHGPSRFLFTAMANTEGNVI 421
Query: 332 LFTERGQFGTLARML--------------------QADPPPKAVKVTMSRRVPLVGEELI 371
+ T R + TLAR L ++V + +VPL G EL
Sbjct: 422 MLTGRSEEQTLARDLYNRWERSQTTGSKWGEGKIGHLTQLEGKLQVEVDSKVPLSGAELE 481
Query: 372 AY-EEEQTRLKKEEALKASLVK----------EEESKASLGPDNNLSGDPMVIDANNANA 420
A+ E E+ + +KE A KA++ + E +S + D + +GD V ANA
Sbjct: 482 AHVESERLQKEKEAAHKAAVDRSRRMLEADDLESDSDSESEADGH-AGDITVRRTEGANA 540
Query: 421 SADVVEPHGGRYRDILIDGFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYII 474
A E DI + G S A M FPF E + D FGE ++ ++
Sbjct: 541 YAGDGEDVRTMSFDIYVKGQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMR 600
Query: 475 KDEDMDQAAMHIGGDDGKLDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRA 531
K ++ + + K + P SK VS E+ V++K ++ F+D EG
Sbjct: 601 KGREIAEEGETEEVREAKKRKEEEEEKAKQAPEPPSKYVSEEVGVELKAMIGFVDMEGLH 660
Query: 532 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLC 589
DG+SIKTI+S + P KL++V S E+T++L + +++P + E I + +
Sbjct: 661 DGQSIKTIISDLQPRKLIIVRSSKESTQNLISFLGSVTGFTRDIFSPSLTEEIKIGEHVQ 720
Query: 590 AYKVQLSEKLMSNVLFKKLGD---YEIAWVDAEVGKTENGMLSLL--------------- 631
+Y + L + + S+ L KK D YE+ +VD ++ + +L
Sbjct: 721 SYSLTLGDSI-SSALAKKWSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLVKTEAE 779
Query: 632 ---------------------PIST--PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEF 666
PIS+ P P S +GDL++A LK LS + I EF
Sbjct: 780 GDDADDEAKPSAEELAAASAPPISSSAPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEF 839
Query: 667 AG-GALRCG-----------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 714
AG G L CG V++RK+G +IV+EG + Y ++R L
Sbjct: 840 AGEGVLVCGPGIAQEAQGAASVVSVRKIGEG----------KIVLEGCIGRVYVEVRKAL 889
Query: 715 Y 715
Y
Sbjct: 890 Y 890
>gi|406604299|emb|CCH44271.1| Cleavage and polyadenylation specificity factor subunit
[Wickerhamomyces ciferrii]
Length = 795
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 215/804 (26%), Positives = 348/804 (43%), Gaps = 150/804 (18%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPY-AMKQLGL 80
L+ DG L D GW+ D S L K+ TID ++LSHP T +G Y A + L +
Sbjct: 18 LLEFDGVRVLADPGWDGITDISYL---DKILPTIDIIVLSHPTTNFIGCYAYLAFRDLNI 74
Query: 81 SAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLS 120
PV++T P LG + D Y S + + +SQ L
Sbjct: 75 --PVYATLPTTNLGRVATLDLYRSVGLIGPLKNTEFELKDVEEAFDKIITVKHSQTIDLR 132
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL---ESFVRPA 177
GK +G+ + AGH LGGT+W K+ E +IYA +N K+ LNG L + +RP+
Sbjct: 133 GKYDGLSITAINAGHTLGGTIWAFNKNPEKIIYAPQWNHSKDSFLNGADLLQNSTLMRPS 192
Query: 178 VLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 236
V+IT + A+ + P ++R E F + + TL GG VLLP GR+LEL+ +++++
Sbjct: 193 VIITSS--AIGSVLPHKKRVEKFFELVDATLGRGGTVLLPTSIGGRMLELVHLIDEHL-- 248
Query: 237 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296
S P+ L+Y + + Y S LEWM ++ + +ET F V +I +EL N
Sbjct: 249 QSAPIPVLMLSYTKARNLTYAGSMLEWMAPAVIREWETRGQPPFDSSRVQ-VIEPNELLN 307
Query: 297 APDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------GQFGTLARMLQ 347
P G K+V AS A E G + D K ++ TE+ F T + Q
Sbjct: 308 MP-GAKVVFASGAGFEDGSVAQAALTTLCDDEKTTIILTEKTVENTIGNDLFYTWRSLAQ 366
Query: 348 ADPP------------PKAVKVTMSRRVPLVGEELIAYEE--EQTRLKKEEALKASLVKE 393
A+ P K + V R L+G+ELI YE +Q RL KE+ K L ++
Sbjct: 367 ANSPDGKAQDGVPVVLQKQLNVKPIREEELLGDELINYENHVKQRRLLKEQTKKNKLSEK 426
Query: 394 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 453
+E++ D + + + + + + I ID V S A MF F
Sbjct: 427 KETQ--------------FEDESESESEDEDILGEEKKIETIPIDVDVRSSKGRAKMFQF 472
Query: 454 YENNSEWDDFGEVINPDDYIIKDE-DMDQAAMHIG--------GDDGKLDEGSA---SLI 501
+++DD+GE+IN D+ ++E D+ + H G+ K +EG +
Sbjct: 473 VPRKAKFDDYGEIINHSDFTREEEKDVGKMKRHKQNQNNKVQIGEKKKWNEGKKQDDTSD 532
Query: 502 LDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT- 558
LDA P ++L + +C+L ++D G D RS+ I+ + P K+ L S + T
Sbjct: 533 LDALHHPKSRFISQLAINSRCVLTYVDLAGLVDIRSLSLIIPALKPKKVFLSPDSTDNTT 592
Query: 559 -EHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWV 616
E + KH V + + I + ++ + L EKL + ++++ G + +A V
Sbjct: 593 NESVLTMFKKHNKFEVIELKTNDPISAKDSVQSFDILLDEKLADQLKWQRIAGGFTVAHV 652
Query: 617 ---------------------------------------DAEVGKTENGM----LSLLPI 633
D ++ K E+ L L P+
Sbjct: 653 IGSVKTKKEIEQEKLKEEENIKDEDVKMEDVKSEADTKDDIDMDKKESSRHDNELVLAPL 712
Query: 634 STPAP-----PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
S + + +GD+K+++LK LS +VEF G G L + V +RK+
Sbjct: 713 SQDSAFLANIRSTQLAIGDVKLSELKKSLSISH-KVEFKGEGTLVIDDIVAVRKISDG-- 769
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIR 711
+V++G +Y++R
Sbjct: 770 --------DVVVDGSPGRLFYEVR 785
>gi|321257420|ref|XP_003193582.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus gattii WM276]
gi|317460052|gb|ADV21795.1| Cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus gattii WM276]
Length = 900
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 232/883 (26%), Positives = 372/883 (42%), Gaps = 197/883 (22%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVASTIDAVLLSHPDTLHLGALP 72
+ YL+ +D L+D G D+ + + + +A T+ VLLSH + +L P
Sbjct: 20 ICYLLELDDARILLDMGQRDYRSSTQQGRWDYEEAVRDLAPTLSLVLLSHSSSNYLSLYP 79
Query: 73 YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------------------- 107
YA + GL+ PV++T+P +G + + S RS
Sbjct: 80 YARARWGLTCPVYATQPTVEMGRVVCLAEAESWRSECPVESEGEVAGDDGSKKPFKGPFV 139
Query: 108 ------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYA 154
+ + YSQ HL G +++ P +GH LGG+++KI + V+YA
Sbjct: 140 PTVEEIHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLGGSLFKIRSPTSGTVLYA 199
Query: 155 VDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 204
V N E+HL+G V ++ +RP +LI + ++ P R++RE D I+
Sbjct: 200 VGVNHTSERHLDGMVGVQNGPTGYVDGVLRPDLLIVEGGRSMVINPKRKEREAALIDTIT 259
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSLN--------YPIYFLTY 248
TL + +VLLPVD + R+LEL+++L+ +W + N YP+ ++
Sbjct: 260 STLESNHSVLLPVDPSPRLLELMVLLDQHWTFKRTPKVKQQRYNEPPADLWPYPLCIVSK 319
Query: 249 VSSSTIDYVKSFLEWMG----DSITKSFETSRDN--------------AFLLKHVTLLIN 290
+ + + +S ++WMG DS + R +HV +N
Sbjct: 320 TAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMALGSEYGVLDFRHVQFFLN 379
Query: 291 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 346
++L P PKLVLA ++ G S +F A+ N+++ T R + TLAR L
Sbjct: 380 PTDLLQTYPLTRPKLVLAIPPTMSHGPSRFLFTAMANTEGNVIMLTGRSEEQTLARDLFN 439
Query: 347 ------------------QADPPPKAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALK 387
++V M +VPL G EL A+ E E+ + +KE A K
Sbjct: 440 RWERSQTVGSKWGEGKIGHLTQLEGKLQVEMDSKVPLSGAELEAHMESERLQKEKEAAHK 499
Query: 388 ASLVKEEE---------SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILID 438
A++ + S + L+G V ANA A E DI +
Sbjct: 500 AAVDRSRRMLEADDLESDSESESEADGLAGGITVRRTEGANAYAGDGEDVRTMSFDIYVK 559
Query: 439 GFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK 492
G S A M FPF E + D FGE ++ ++ K ++ + D K
Sbjct: 560 GQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMRKGREIAEEGETEEVRDAK 619
Query: 493 LDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 549
+ P SK VS E+ V++K ++ F+D EG DG+SIKTI+S + P KL+
Sbjct: 620 KRKEEEEEKAKQAPEPPSKYVSEEVGVELKAMIGFVDMEGLHDGQSIKTIISDLQPRKLI 679
Query: 550 LVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
+V S E+T++L + +++P + E I + + +Y + L + + S+ L KK
Sbjct: 680 IVRSSKESTQNLISFLGSVTGFTKDIFSPSLTEEIKIGEHVQSYSLTLGDSI-SSALAKK 738
Query: 608 LGD---YEIAWVDAEV----GKT--------------------------------ENGML 628
D YE+ +VD ++ G T E
Sbjct: 739 WSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLIKTEAEGDEADGESKPSAEELAAA 798
Query: 629 SLLPIST--PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEFAG-GALRCG--------- 674
S PIS+ P P S +GDL++A LK LS + I EFAG G L CG
Sbjct: 799 STPPISSSAPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEFAGEGVLVCGPGIAQEAQG 858
Query: 675 --EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
V++RK+G +IV+EG + Y ++R LY
Sbjct: 859 AASIVSVRKIGEG----------KIVLEGCIGRVYVEVRKALY 891
>gi|344253621|gb|EGW09725.1| Sodium/potassium/calcium exchanger 4 [Cricetulus griseus]
Length = 1206
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 90/445 (20%)
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKS 259
+ +TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS + +++ KS
Sbjct: 141 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 200
Query: 260 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
+EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+
Sbjct: 201 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDL 259
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 379
F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E++
Sbjct: 260 FIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKL 319
Query: 380 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID 438
K+ KE + +S + ++ D+ +P + + D+++
Sbjct: 320 KKEAAKKLEQ-SKEADIDSS----------------DESDVEEDIDQPSAHKTKHDLMMK 362
Query: 439 G-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDG 491
G F + PMFP E +WD++GE+I
Sbjct: 363 GEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII------------------------ 398
Query: 492 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
K + +IDYEGR+DG SIK I++ + P +L++V
Sbjct: 399 ---------------------------KARVTYIDYEGRSDGDSIKKIINQMKPRQLIIV 431
Query: 552 HGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
HG EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K
Sbjct: 432 HGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCK 489
Query: 608 LGDYEIAWVDA----EVGKTENGML 628
D E+AW+D V K + G++
Sbjct: 490 AKDAELAWIDGVLDMRVSKVDTGVI 514
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 31/185 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSG------KGEG-IVVAPHVAGHLLG-----GTVWKITKDGED 150
+ +L +SQ +L +G+G +++A AG +L +W+ TKD
Sbjct: 121 AAFDKIQQLKFSQIVNLKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWR-TKDAGL 179
Query: 151 VIYAV 155
+Y++
Sbjct: 180 GVYSL 184
>gi|358394479|gb|EHK43872.1| hypothetical protein TRIATDRAFT_79096 [Trichoderma atroviride IMI
206040]
Length = 957
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 226/915 (24%), Positives = 358/915 (39%), Gaps = 240/915 (26%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H T
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDESFSSEKLEELEKQVPTLSLILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYS- 114
HL A + K + L PV++T PV LG D Y S + S++ TY+
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETTYAY 125
Query: 115 -------QNYHLSGKG-------------------------------EGIVVAPHVAGHL 136
QN L G+ + + +GH
Sbjct: 126 SQTATTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY 241
A + R +R E D I + GG VL+PVDS+ RVLE+ +LE+ W + N
Sbjct: 246 GADKSAQAGGRAKRDEHLIDMIKSCVSRGGTVLIPVDSSARVLEISYLLENAWRTDAANR 305
Query: 242 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 280
+Y SST+ Y +S LEWM ++I + FE ++ A F
Sbjct: 306 DGVLKFSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKTNGGSEKKEGAPF 365
Query: 281 LLKHVTLLINKSE--------LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
K++ LL K++ ++N +++LAS S++ GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIAKLLSQSIENGETQGRVILASDVSMDWGFSKDLIKGLAKDTRNLVI 425
Query: 333 FTERGQFG-----TLARML------QAD-----------------PPPKAVKVTMSRRVP 364
TER +++RM+ + D + ++V +RR P
Sbjct: 426 LTERPSLANTDAPSISRMMWEWWKERRDGISTEHASNGDSLETIYSGGRELEVREARREP 485
Query: 365 LVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASAD 423
L G+EL Y++ T+ + + +A E+ A + D + + A
Sbjct: 486 LEGDELAIYQQWLATQRQLQATQQAGGAGALEASADVVDDASSESSSDSEEEGEQQGKAL 545
Query: 424 VVEPHGGRY---------RDILIDGFVPPST----------SVAPMFPFYENNSEWDDFG 464
V G+ D+ I+ + T FP DDFG
Sbjct: 546 NVSATMGQAGRKNVVLKDEDLGINILIKKKTVFDFDTRGKRGRERSFPMAIRRKRHDDFG 605
Query: 465 EVINPDDYIIKDEDMDQAA--MHIGGDDGKLD---------------------------- 494
E+I P+DY+ +E D AA I +D KL
Sbjct: 606 ELIRPEDYLRAEEKEDDAADGAQIAAEDEKLGKKRKWDDVVKQVAGANKRPSNNRTATAD 665
Query: 495 --------EGSASLILD----------AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
+G+ + LD P K+V N +V V + FID+ G D RS+
Sbjct: 666 DAETMDLADGAVADELDMVEDTEPEEPTGPCKLVYNTESVAVNLRIAFIDFSGLHDKRSL 725
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTPQIEETIDVTSDLCA 590
++ + P KL+LV G+ E T L C + V+TP+I +D + D A
Sbjct: 726 NMLIPLIQPRKLILVGGTQEETMTLATDCRAALASDGDRSVDVFTPEIGTWVDASMDTNA 785
Query: 591 YKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------GKTENG-------------- 626
+ V+L++ L+ + ++ + I + ++ G+T+
Sbjct: 786 WVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAQEAEGQTQEDAANKRQKTEPSTST 845
Query: 627 --------------MLSLLP---ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG- 668
L +LP IS +S+ VGDL++ADL+ + S G EF G
Sbjct: 846 AVALTNAADTATMPTLDVLPANLISAARSAAQSLHVGDLRLADLRRAMQSAGHSAEFRGE 905
Query: 669 GALRCGEYVTIRKVG 683
G L V +RK
Sbjct: 906 GTLVVDGSVAVRKTA 920
>gi|340966678|gb|EGS22185.1| putative cleavage and polyadenylation protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 998
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 242/968 (25%), Positives = 363/968 (37%), Gaps = 307/968 (31%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +E+ S L+ +DG LID GW++ FDPSLL+ L K T+ +LL+H
Sbjct: 5 TPLLGARSESTASQSLLELDGGVKVLIDVGWDESFDPSLLRELEKHVPTLSLILLTHATI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-RSVTR------------ 110
HLGA + K L PV++T PV LG D Y S R+ T
Sbjct: 65 NHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASNPRAATTIPKSSLAETAFA 124
Query: 111 ---------------------------------LTYSQNYHLSGKG-----EGIVVAPHV 132
L YSQ + G+ + +
Sbjct: 125 FPQAAGGAELPSSLLLQPPTPDEIIRYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYN 184
Query: 133 AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAV 178
+GH LGGT+W I E ++YAVD+N+ +E G V+E +P
Sbjct: 185 SGHSLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGGHGAAVGTEVIEPLRKPTA 244
Query: 179 LITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--- 235
L+ + P ++ E +++ + GG VL+PVDS+ RVLEL +LE W
Sbjct: 245 LVCSSRTPDAALPRARRDEQLLESVKLCIARGGTVLIPVDSSARVLELAYLLEHAWRTEV 304
Query: 236 ----EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------------ 279
E +Y ST+ +S LEWM DSI + FE A
Sbjct: 305 AKENEVFKGTKLYLAGRSVGSTMRNARSMLEWMDDSIVREFEAVAGGARTTNGGANASGG 364
Query: 280 --------FLLKHVTLLINKSELDNA-------PDG--PK--LVLASMASLEAGFSHDIF 320
F K++ LL K++++ P+G PK ++LA+ SL+ GFS D+
Sbjct: 365 NKAKEAGPFDFKYLRLLERKAQIERVLQQATSPPEGESPKGTVILATDTSLDWGFSKDVL 424
Query: 321 VEWASDVKNLVLFTERGQFG-----TLARML-----------------------QADPPP 352
ASD +NLV+ TE+ ++ARML Q
Sbjct: 425 KAIASDARNLVILTEKPNLANPDRPSIARMLWDWWRERRDGVAVEQTASGDTFEQVYGGG 484
Query: 353 KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV 412
+ + V S R PL G EL Y Q L + L+A+L S G L V
Sbjct: 485 RELSVPESTRHPLEGSELTVY---QQWLATQRQLQATL-------RSGGAAGALEASADV 534
Query: 413 ID-----------------ANNANASADVVEPHGGRYRDILID---GF------------ 440
+D N S + + R + +L D G
Sbjct: 535 VDDASETTTESEESETEQQGKALNVSTTIGQ--ASRKKVVLTDEDLGITILLKKKGVYDF 592
Query: 441 -VPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI--------------IKDEDMDQAAMH 485
V MFP D+FGE+I P+DY+ +D + +
Sbjct: 593 DVRNKKGRERMFPTVLRRKRVDEFGELIRPEDYLRAEEREDEADAAAAANTQDASKPEHN 652
Query: 486 IGG----DD------------------GKLDEGSASLILDAK------------------ 505
+G DD G +DEG +L A
Sbjct: 653 LGKKRKFDDVAAATANTTSPAKRPARRGSIDEGDGALSGPASSDGQPGDELDELEDDEEA 712
Query: 506 ---PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK 562
P+K+V + TVQV + F+D+ G D RS+ ++ + P KL+LV G+ E T L
Sbjct: 713 VLGPAKLVVAQQTVQVHLRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVGGTEEETLSLA 772
Query: 563 QHC------------------LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
+ C K V ++TP + ETI+ + D A+ V L++ + ++
Sbjct: 773 EDCRNLLGAAPSQPEGAEAMPTKTVSADIFTPLLNETINASVDTNAWSVLLTDSFVKHLK 832
Query: 605 FKKLGDYEIAWV------------------------DAEVGKTENGMLSL-LPISTPAPP 639
++ + I V D++ K + LSL +P++TP
Sbjct: 833 WQTVRGLGIVTVTGLLLPPGVEPLSQPAQQQQPQEPDSKRAKLD---LSLPVPLTTPETA 889
Query: 640 HKS-----------------------VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
++S + VGDL++ADL+ L + G + EF G G L
Sbjct: 890 NRSLPTLDILPPQLAGATVRSGGVQPLHVGDLRLADLRRGLLAAGHRAEFRGEGTLLVDG 949
Query: 676 YVTIRKVG 683
V +RK G
Sbjct: 950 SVVVRKTG 957
>gi|378733596|gb|EHY60055.1| hypothetical protein HMPREF1120_08027 [Exophiala dermatitidis
NIH/UT8656]
Length = 948
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 217/956 (22%), Positives = 374/956 (39%), Gaps = 268/956 (28%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++ S L+ +DG L+D GW++ FD L + K ST+ +LL+HP
Sbjct: 5 TPLLGAQSDSRASQSLLELDGGVKILVDVGWDERFDTRQLTEIEKHTSTLSFILLTHPTI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQY--------------------- 102
H+GA + K + L P+++T PV G + D Y
Sbjct: 65 SHIGAFAHCCKHIPLFSQVPIYATPPVIAFGRTLLEDLYSSSPLAATFIPGSASPEDGTS 124
Query: 103 ---LSRRSVTR-----------------LTYSQ-----NYHLSGKGEGIVVAPHVAGHLL 137
SR ++ R L YSQ S EG+ + + AGH L
Sbjct: 125 ADDKSRSNILRQAPTFEEINKYFQLISPLKYSQPLQPTASQFSAPVEGLTLTAYNAGHTL 184
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT----------VLESFVRPAVLITDAYNAL 187
GGT+W I + E ++YAVD+N+ +E + G V+E +P+ L+ + A
Sbjct: 185 GGTIWHIQQGMESIVYAVDWNQARENVVAGAAWFGGVGGAEVIEQLRKPSALVCSSVGAT 244
Query: 188 H---NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYP 242
+ + + + I ++ GG VL+P DS+ RVLEL +LE W++ HS ++
Sbjct: 245 RVALSGGRKARDDALLGHIKTSVAKGGTVLIPTDSSARVLELAWLLEKAWSDPAHSASFK 304
Query: 243 ---IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------------------- 279
+Y + ++T+ + +S LEWM DSI + FE +N
Sbjct: 305 DVKVYMASRSGNATLRHARSLLEWMDDSIVREFEGEDENPTTQPYNRRGGNKAAGTNKPS 364
Query: 280 --FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT- 334
F K+V ++ K +L+ +GP+++LAS +L+ GFS + +NLV+ T
Sbjct: 365 RPFEFKNVKVVERKHQLEKLLKVEGPRVILASDVTLDWGFSRSLLEHVVQKPENLVILTE 424
Query: 335 ----------------------------ERGQFGTLARMLQADPPPKAVKVTMSRRVPLV 366
ER + G ++ Q + +K+ + PL
Sbjct: 425 RLNVRPGSESPGQAFWQWFEQRQDGVALERTEGG--GQLEQVHSGGRMLKLKNPEKAPLS 482
Query: 367 GEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNA-------- 418
+E Y Q + + ++ SL E + D+N+ + + +
Sbjct: 483 AQESQRY---QQYMATQRQIQESLTTTERDQTV--ADDNIDDESSSSSSEESDDEQQGRV 537
Query: 419 -NASADVVEPHGGRYR----------DILI------DGFVPPSTSVAPMFPFYENNSEWD 461
N SA + HG R + +IL+ D V +FP+ + D
Sbjct: 538 LNVSAAL--GHGARNKLALSDEDLGVNILLRKKGVYDYDVRNKKGRNAVFPYTHSRKRGD 595
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------------------- 494
+FGE I P+D++ ++E +Q A + G G L
Sbjct: 596 EFGEFIKPEDFLREEEKEEQDAANSGKTGGTLGQKRKWEDTNNANDSRSKRARGQGPKGH 655
Query: 495 ----------------EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 538
EG + P+KVV + V L F+D+ G D RS++
Sbjct: 656 APDGHGDESDSEASDIEGEVEVEGIQGPAKVVYTTTEITVNARLTFVDFAGLHDQRSLQM 715
Query: 539 ILSHVAPLKLVLVHGSAEATEHLKQHCL-----------KHVCPHVYTPQIEETIDVTSD 587
++ + P KL+LV G+ T L C + +++P I +T+D + D
Sbjct: 716 LIPLIGPKKLILVGGTEAETLSLASDCKELLGMKVAGAEEQTSTEIFSPTIGQTVDASVD 775
Query: 588 LCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLP--------------- 632
A+ V+LS L+ + ++ + + + V ++ K E + LP
Sbjct: 776 TNAWIVKLSRALVRTLRWQNVKNMGVVTVQGQL-KAEQEQENDLPDDPLLKKQKLETEAA 834
Query: 633 ------------------ISTPAPPHKSVL----VGDLKMADLKPFLSSKGIQVEFAG-G 669
++ A +SV VGDL++ADL+ ++ G EF G G
Sbjct: 835 AQAQAPPPPPLVPVLDVLPASLAASTRSVTQPIHVGDLRLADLRRIIAMDGHVAEFRGEG 894
Query: 670 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG----------PLCEDYYKIRAYLY 715
L V ++K+ T +I++EG ++Y +++ +Y
Sbjct: 895 TLLVDGTVVVKKL----------ATGKIIVEGIPANGSAMTRSAADNYTRVKRKVY 940
>gi|405120276|gb|AFR95047.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. grubii H99]
Length = 899
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 230/901 (25%), Positives = 378/901 (41%), Gaps = 202/901 (22%)
Query: 5 VQVTPLSGVFNEN----PLSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVAST 54
+ +TPLS E P+ YL+ +D L+D G D+ + + + +A T
Sbjct: 2 ITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASAQQSSWDYEEAVRDLAPT 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------- 107
+ VLLSH + +L PYA + GL+ PV++T+P +G + + S R+
Sbjct: 62 LSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLAEAESWRAECPVESE 121
Query: 108 -----------------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 138
+ + YSQ HL G +++ P +GH LG
Sbjct: 122 DVAEDDGSKKPLKGPFVPTVEEVHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLG 181
Query: 139 GTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALH 188
G+++KI + V+YAV N E+HL+G V + +RP +LI + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGVNHTSERHLDGMVGVQNGPTGYADGVLRPDLLIAEGGRSMV 241
Query: 189 NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSL 239
P R++RE D I+ TL + +VLLPVD + R+LEL+++L+ +W +
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFKRTPKVKQQRY 301
Query: 240 N--------YPIYFLTYVSSSTIDYVKSFLEWMG----DSITKSFETSRDN--------- 278
N YP+ ++ + + + +S ++WMG DS + R
Sbjct: 302 NEPPADLWPYPLCIVSKTAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMAL 361
Query: 279 -----AFLLKHVTLLINKSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
+HV +N ++L P PKLVLA ++ G S +F A+ N++
Sbjct: 362 GSEYGVLDFRHVLFFLNTTDLLQTYPLTRPKLVLAVPPTMSHGPSRFLFTAMANTEGNVI 421
Query: 332 LFTERGQFGTLARML--QADPPPKA------------------VKVTMSRRVPLVGEELI 371
+ T R + TLAR L + + A ++V + +VPL G EL
Sbjct: 422 MLTGRSEEQTLARDLYNRWERSQTAGSKWGEGKIGHLTRLEGKLQVEVDSKVPLSGAELE 481
Query: 372 AY-EEEQTRLKKEEALKASLVK----------EEESKASLGPDNNLSGDPMVIDANNANA 420
A+ E E+ + +KE A KA++ + E +S + D + +G V ANA
Sbjct: 482 AHVESERLQKEKEAAHKAAVDRSRRMLEADDLESDSDSESEADGH-TGGITVRRTEGANA 540
Query: 421 SADVVEPHGGRYRDILIDGFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYII 474
A E DI + G S A M FPF E + D FGE ++ ++
Sbjct: 541 YAGDGEDVRTMSFDIYVKGQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMR 600
Query: 475 KDEDMDQAAMHIGGDDGKLDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRA 531
K ++ + + K + P SK VS ++ V++K ++ F+D EG
Sbjct: 601 KGREIAEEGETEEVREAKKRKEEEEEKAKQAPEPPSKYVSEKVGVEMKAMIGFVDMEGLH 660
Query: 532 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLC 589
DG+SIKTI+S + P KL++V S E+T L +++P + E I + +
Sbjct: 661 DGQSIKTIISDLQPRKLIIVRSSKESTRDLISFLGSATGFTKEIFSPSLTEEIKIGEHVQ 720
Query: 590 AYKVQLSEKLMSNVLFKKLGD---YEIAWVDAEVGKTENGMLSLLPIST----------- 635
+Y + L + + S+ L KK D YE+ +VD ++ + +L +
Sbjct: 721 SYSLTLGDSI-SSALAKKWSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLVKTEAE 779
Query: 636 ---------------------------PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEF 666
P P S +GDL++A LK LS + I EF
Sbjct: 780 GDDAEDEAKPSAEELAAASASPISSSVPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEF 839
Query: 667 AG-GALRCG-----------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 714
AG G L CG V++RK+G +IV+EG + Y ++R L
Sbjct: 840 AGEGVLVCGPGIAQEAQGAASVVSVRKIGEG----------KIVLEGCIGRVYVEVRKAL 889
Query: 715 Y 715
Y
Sbjct: 890 Y 890
>gi|224161209|ref|XP_002338303.1| predicted protein [Populus trichocarpa]
gi|222871828|gb|EEF08959.1| predicted protein [Populus trichocarpa]
Length = 106
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/106 (89%), Positives = 100/106 (94%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR 106
S+ D LHLGALP+AMKQ GL+APVFSTEPVYRLGLLTMYDQ SR+
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYDQSFSRK 106
>gi|320163729|gb|EFW40628.1| cleavage and polyadenylation specificity factor [Capsaspora
owczarzaki ATCC 30864]
Length = 744
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 173/292 (59%), Gaps = 17/292 (5%)
Query: 108 VTRLTYSQNY--HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
+T L + Q L K + I + PH AGH++GGT+W+I +GED++YAVD+N + E+HL
Sbjct: 36 ITTLKFQQRVVVPLGAKTKPITIIPHAAGHMVGGTIWRIITEGEDIVYAVDFNHQLERHL 95
Query: 166 NGTVLE---SFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL------RAGGNVLL 215
N T L+ + RP++LI++++N PR+ R+ +F D+I TL AGG+VL+
Sbjct: 96 NPTELKDLFQYERPSILISNSFNYGAESVPRKTRDRLFLDSIVNTLINPKDGSAGGSVLI 155
Query: 216 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
P D+AGRVLEL +L+ W ++ N+PI L+++S + +++ + +EWM + K FET+
Sbjct: 156 PTDTAGRVLELAQVLDKQWEKYK-NFPIVVLSHISRTVMNFAMAQIEWMSAKMQKEFETT 214
Query: 276 RDNAFLLKHVTLLINKSELDN-APDG-PKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
R N F H+ + EL A +G P +VLASM L +GF+ D+ ++WA + KNL++F
Sbjct: 215 RSNPFSFAHIKMCQTMEELAQVAKEGTPVVVLASMEGLTSGFARDLMLKWAENPKNLIIF 274
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 385
LA+ L + + + + R+ L GEEL Y EQ + E A
Sbjct: 275 PNNSPASDLAKSLVEK--NRQIVIDVKTRIALEGEELDEYLREQEEAEMELA 324
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 145/310 (46%), Gaps = 45/310 (14%)
Query: 445 TSVAPMFPFYENN-SEWDDFGEVINPDDYIIKDEDMDQA-----------------AMHI 486
T PMFPF E + + D++GEVI DY I E+ AM
Sbjct: 447 TRTFPMFPFVEQHRKKADEWGEVIRRSDYQILTEEFTDTLKPLASTSSSAGTSHATAMVT 506
Query: 487 GGDDG------KLDEGSASLILDA----KPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
G ++ KLD L A +PSK VS ++ +Q++C + +D EGRAD S+
Sbjct: 507 GEEETGLESTLKLDTSQIKQQLHATAHNRPSKTVSKQVALQIQCTVKHVDLEGRADSMSL 566
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--VYTPQIEETIDVTSDLCAYKVQ 594
TI V +L+LVHGSA ++ L + L+ P V + TID +S+ Y+V+
Sbjct: 567 ATIFESVNARQLILVHGSATSSNEL-ESALRVKMPQCKVTIAALNTTIDASSEHNIYQVR 625
Query: 595 LSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPA---PPHKSVLVGDLKMA 651
L + LMS + F G +E+A+ ++ G +L PA P H V VGD K+
Sbjct: 626 LRDSLMSTLKFSTTGMFELAYFHGQIHVPTGGKTTLELDVLPAHLVPGHAQVFVGDPKLY 685
Query: 652 DLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 711
++K L G EF G L C + + IRK Q IEG L EDY+ +R
Sbjct: 686 EVKEVLIEAGFHAEFVQGVLVCNDTIAIRK-----------QDQAFAIEGGLSEDYFAVR 734
Query: 712 AYLYSQFYLL 721
LY QF ++
Sbjct: 735 DVLYDQFAIV 744
>gi|422294077|gb|EKU21377.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 429
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 214/418 (51%), Gaps = 48/418 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
G + L GV PL YL+ + L+DCGW+ D +LL+PL V + VLLS
Sbjct: 16 GEGLTFRVLYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLS 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR---------------- 105
PD H+GALP+ K L P+++T+PV+++ + +YD YL++
Sbjct: 76 FPDLSHMGALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLYLNKCMDTASGAAGCPAFTL 135
Query: 106 ----RSVTR---LTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKIT-KDGEDVIYAVD 156
++ R L +SQ + +G + V P+ AG +LGG W++ K E+++YAVD
Sbjct: 136 DEVDAAMARFQLLKFSQPLEVRQQGRFYLSVTPYPAGRILGGCFWRVNYKKMEEIVYAVD 195
Query: 157 YNRRKEKHLNGTVLESF--------VRPAVLITDAYNALH-NQPPRQQREMFQDAISKTL 207
+N + E+HL G V E+F RP + ITDA + + + R+ F A + TL
Sbjct: 196 FNLKSERHLTGAV-EAFNALSADKEQRPCLFITDARPSPNLSTDERKVETEFLAAATGTL 254
Query: 208 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMG 265
R GG+VL+PV+++GR ELLL L +W L Y I L +++ + + + KS +E+M
Sbjct: 255 RKGGHVLIPVETSGRAQELLLALNGHWRSDRLLWGYKIVLLHHMARNVLHFTKSMVEYMH 314
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAP---DGPKLVLASMASLEAGFSHDIFVE 322
+ + F+ S N F LKHV + EL+ A P +VLAS ++ GFS +
Sbjct: 315 PEVIRDFDRSLRNPFSLKHVVPAQSMLELEAAMGEYRNPVVVLASDEGMDTGFSRALATR 374
Query: 323 WASDVKNLVLFTERGQFGTLAR-MLQADPPPKAVKVTMSRRVP----LVGEELIAYEE 375
WAS +N +L + G+LA + PKA +S VP +VGEEL E
Sbjct: 375 WASGPENALLLCGHLRKGSLAESFWKLRHLPKA---ALSFSVPVIERIVGEELAGLRE 429
>gi|301092285|ref|XP_002997001.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112190|gb|EEY70242.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 222
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV + P +YL+ +D L+DCGW D +D LL+PL +V ID VL+SH
Sbjct: 4 ITFTPLYGVHSTAPCCAYLLEVDEVCILLDCGWTDAYDVELLKPLQRVVDRIDLVLVSHL 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
D H+GALPYAM +LGLSAPV+ T PV+R+G + +YD + ++
Sbjct: 64 DLAHMGALPYAMGKLGLSAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLV 123
Query: 106 -RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+L YS+ L+ GEGIV+ PHVAGHL+GG +W+I K+ +D+IYAVDYN R E
Sbjct: 124 FERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDDIIYAVDYNHRSEHV 183
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 197
L T+L+SF RP +LITD+ N QP + R+
Sbjct: 184 LQKTILDSFTRPTLLITDSMNLHAEQPKLKDRD 216
>gi|348689663|gb|EGZ29477.1| hypothetical protein PHYSODRAFT_473604 [Phytophthora sojae]
Length = 221
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV + P +YL+ +D L+DCGW D +D LL+PL +V ID VL+SH
Sbjct: 4 ITFTPLYGVHSSAPCCAYLLEVDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVSHL 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
D H+GALPYAM +LGL+APV+ T PV+R+G + +YD + ++
Sbjct: 64 DLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLV 123
Query: 106 -RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+L YS+ L+ GEGIV+ PHVAGHL+GG +W+I K+ +D+IYAVDYN R E
Sbjct: 124 FERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDDIIYAVDYNHRSEHV 183
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 197
L T+L+SF RP +LITD+ N QP + R+
Sbjct: 184 LQKTILDSFTRPTLLITDSMNLHAEQPKLKDRD 216
>gi|347838796|emb|CCD53368.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Botryotinia fuckeliana]
Length = 934
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 229/918 (24%), Positives = 357/918 (38%), Gaps = 247/918 (26%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GIKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR---------------RSVTR------------LTYSQNY 117
++T PV LG + D Y S +S T+ L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYCSTPLASTIIPTTSSFLLQSPTKEEINYYFSLVRPLKYSQPH 145
Query: 118 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 165
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 222
V+E +P LI + P R +R E+ D I ++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGAR 262
Query: 223 VLELLLILEDYWAEHSL-------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 274
++EL +LE W + + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTENQEEESAFKSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 275 ----------SRDNA---------FLLKHVTLLINKSELD---NAPDG-----PKLVLAS 307
R NA F KH+ LL K ++D N D K++LAS
Sbjct: 323 PGHEEQRTGQQRRNAEEAKQHIGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVILAS 382
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ-----------ADPP 351
S+E GFS ++ + A D KNL++ TER G G L R L ++P
Sbjct: 383 DTSIEWGFSKEVLCKIADDDKNLLILTERLNPISGAPG-LGRTLWSWWEERRDGVISEPS 441
Query: 352 P------------KAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKA 398
+ +++ +R+PL G +L Y++ T+ + + L+ E+ A
Sbjct: 442 SNGGVLEQVYGGGRDLEIKEPKRIPLEGNDLTVYQQWLATQRQLQTTLQPGGATALEASA 501
Query: 399 SL-------------GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-------- 437
+ +N G + I A A+ + G D+ +
Sbjct: 502 DIVDDASSDSSSDSDDSENEQQGKALNISATMGQANRKKI---GLSDEDLGVNILLRKKG 558
Query: 438 --DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIG----- 487
D V MFP DDFGE+I P +++ +DE Q G
Sbjct: 559 VHDFDVRGKKGRDKMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVDGQEPQRPGKYDTK 618
Query: 488 ---GDDGKLDEGSASLILDA----KPSKVVSNE--------------------------L 514
G K D+ +AS A K ++ +NE L
Sbjct: 619 DTLGKKRKWDDVAASGKRRASNEGKRQQISNNEDGSVADSPEEDDLMDIVEEEIPGPSRL 678
Query: 515 TVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ +K L I F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 679 EISIKTLKINLRIAFVDFSGLHDKRSLQMLIPLIQPRKLILVGGMKEETLALASDCRKLL 738
Query: 570 CP------HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIA 614
VYTP++ ID + D A+ V+L++ L+ + ++ + G E
Sbjct: 739 GSTKEKLIDVYTPEVGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKGLGIVTLTGRLETT 798
Query: 615 WVDAEVGKTENG------------------------------MLSLLPISTPAPPHKSVL 644
+D++ +E +L +LP S A +SV
Sbjct: 799 HIDSDSHNSEGANKKQKMIKEESEETPTHAALDSAKAVVDMPILDVLP-SNMASATRSVA 857
Query: 645 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
VGDL++ DL+ + S G+ E G G L V +RK +GT +I +
Sbjct: 858 QPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRK----------TGTGRIEV 907
Query: 700 E--GPLCEDYYKIRAYLY 715
E G +Y ++ +Y
Sbjct: 908 ESVGVTTSSFYAVKGKIY 925
>gi|346976151|gb|EGY19603.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium dahliae VdLs.17]
Length = 972
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 232/929 (24%), Positives = 353/929 (37%), Gaps = 262/929 (28%)
Query: 10 LSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLH 67
L G +E+ S ++ +DG LID GW++ FD L+ L K T+ +LL+H T H
Sbjct: 8 LQGARSESAASQSILELDGGVKVLIDIGWDESFDVEKLKELEKQVPTLSLILLTHATTSH 67
Query: 68 LGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLSR-RSVTRL----------TYS 114
L A + K PV++T PV LG D Y S R+ T + +YS
Sbjct: 68 LAAFAHCCKNFPQFTRIPVYATRPVIDLGRTLTQDLYSSTPRAATTIPHDSLSEVAYSYS 127
Query: 115 Q------NYHLSG-------------------------------KGEGIVVAPHVAGHLL 137
Q N+ L G+ + AGH L
Sbjct: 128 QQPTSDSNFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLTITAFNAGHTL 187
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAYN 185
GGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 188 GGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGAGGAEVIEQLRKPTALICSSRG 247
Query: 186 ALHNQPP---RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW------AE 236
A N P R++ E D I + GG VL+P DS+GRVLEL +LE W +
Sbjct: 248 ADRNAPSGGRRKRDEQLIDMIKLCVSRGGTVLIPADSSGRVLELAYLLEHAWRLEVGKTD 307
Query: 237 HSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA---------------- 279
+L +Y SST+ Y +S LEWM D+I + FE + D
Sbjct: 308 SALRAAKLYLAGRNVSSTLRYARSMLEWMDDNIVREFEATADGQRKANGNDGKHAKDAAP 367
Query: 280 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F + + L+ ++++ DN ++++AS SLE GFS + E A D +NL+
Sbjct: 368 FDFRFMRLVEREAQIRKLLSQTSDNVQSEGRVIVASDNSLEWGFSQQLLRELAKDSRNLL 427
Query: 332 LFTER---GQFG--TLARML--------------QADPPP---------KAVKVTMSRRV 363
+ T++ Q G ++AR L Q+D +A+ VT ++R
Sbjct: 428 ILTDKPSLAQSGQPSIARTLWDWWQERKDGVSIDQSDSNDSIELVYGGGRALSVTDAKRQ 487
Query: 364 PLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASL-------------GPDNNLSGD 409
L G+EL Y++ T+ + + L A + E+ A + DN G
Sbjct: 488 GLEGDELSTYQQWLATQRQLQATLNAGVAGSLEAPADVGDDGSSESSSDSGESDNEQQGK 547
Query: 410 PMVIDANNANAS-ADVVEPHGGRYRDILI------DGFVPPSTSVAPMFPFYENNSEWDD 462
+ I A+ VV ++L D V FP D
Sbjct: 548 ALNISTTMGQATRKKVVLSDEDLGINVLTKKLGASDYDVRAKRGRERCFPLTIRRKRDDQ 607
Query: 463 FGEVINPDDYIIKDEDMD--QAAMHIGGDD--GKL------DEGSAS------------- 499
FGE I P+DY+ +E + Q A DD G+L +EG+ +
Sbjct: 608 FGEAIRPEDYLRAEEKEEDAQDAQDSRRDDVEGRLGSKRKWEEGNGTDSNKRSNARREGS 667
Query: 500 ---------------------------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
IL S +TV ++ + F+D+ G D
Sbjct: 668 VDDVDMPTAADGHLADELDDVEDVVEEEILGPSKLITTSETVTVNLR--IGFVDFSGLHD 725
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTPQIEETI 582
RS+ ++ + P KL+LV GS E T L C K + V+TP++ T+
Sbjct: 726 KRSLNNLIPLIQPRKLILVGGSQEETTTLAADCKKLLAARIGASDESAVDVFTPEVGTTV 785
Query: 583 DVTSDLCAYKVQLSEKLM--------------------------------SNVLFKKLGD 610
D + D A+ V+L + L+ SN K +
Sbjct: 786 DASVDTNAWVVKLGDSLIKKLKWQNLRGLGIVTITGQLLGESHAISESTGSNKRLKTASN 845
Query: 611 YEIAWVDAEVGKTE---NGMLSLLPI-------------STPAPPHKSVLVGDLKMADLK 654
+ A E G+ E N + ++P+ S P H VGDL++ DL+
Sbjct: 846 DDGATFKGEEGRDEDFDNKEIEVVPVLDTLPLSMVSAVRSVAQPLH----VGDLRLTDLR 901
Query: 655 PFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
+ S G EF G G L V +RK
Sbjct: 902 RAMQSAGYTAEFRGEGTLVINGAVAVRKT 930
>gi|392580514|gb|EIW73641.1| hypothetical protein TREMEDRAFT_67471 [Tremella mesenterica DSM
1558]
Length = 944
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 192/778 (24%), Positives = 328/778 (42%), Gaps = 160/778 (20%)
Query: 18 PLSYLVSIDGFNFLIDCGWND------HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGAL 71
PL YL+ +D L+D G +D H + ++A T+ VLLSH T +L
Sbjct: 19 PLCYLLEVDDARILLDMGQSDYTAASSHSSYEYENKVRELAPTLSLVLLSHSQTRYLSLY 78
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------------------ 107
P+A + GL PV++T+P +G + + S RS
Sbjct: 79 PFARARWGLQCPVYATQPTVEMGRVVCLSEVYSWRSEHAVDDTSDHSANHSSGGSPDKGK 138
Query: 108 --------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TK 146
+ + Y+Q HL G +++ P +GH LGGT++KI +
Sbjct: 139 QPLRGPFVPTVEEVHEAFDWIKAVRYNQPLHLDGGLSHLLLTPFRSGHTLGGTLFKIRSP 198
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQRE 197
V+YAV N E+HL+G V E +RP +LI + A P R++RE
Sbjct: 199 TSGTVLYAVGMNHTGERHLDGMVSGQGGPSGYEEGVLRPDLLIVEGSRATVVNPKRRERE 258
Query: 198 M-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------------------AEH 237
D +S TL A +VL+PVD + R+LELL++ + +W AE
Sbjct: 259 TALIDVVSSTLEASRSVLMPVDPSPRLLELLILFDQHWTFKQIPPEKRNHLYVPKEEAER 318
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMG------------DSITKSFETSRDNAFLL--- 282
YP+ ++ + +S +EWMG D + + R L
Sbjct: 319 QWPYPLCLVSRTGHDMASFARSLIEWMGGIVREAGGEEVVDDLPTGGKKGRRKPIGLGNS 378
Query: 283 -------KHVTLLINKSELDNAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+HV + +L + PKLVLA ++ G S +F S N++L
Sbjct: 379 EYGLLDFRHVRFFASPMDLLQGLGLNRPKLVLAIPPAMNHGPSRWLFTAMGSVEGNVILL 438
Query: 334 TERGQFGTLARMLQAD---PPPKAVK-----------------VTMSRRVPLVGEELIAY 373
T GQ +LAR L + P K V ++ +VPL+G EL A+
Sbjct: 439 TSTGQDQSLARDLYNEWEKSQPSGCKWGEGKIGKLHRLDGSMTVELNSKVPLIGAELEAH 498
Query: 374 -EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDA------NNANASADVVE 426
E E+ ++E A +A+L + E + +++ D +DA N A+
Sbjct: 499 VEAERLEKEREAAHQAALNRSERMLEADDLESDSDSDTESLDAATGGLVRNRAEGANAYA 558
Query: 427 PHGGRYRDILIDGFVPPST-----------SVAPMFPFYENNS-EWDDFGEVINPDDYII 474
G R + D FV + MFPF E + DD+GE ++ ++
Sbjct: 559 GDGEDVRTMSFDIFVKGQQMRTGRGTEGGMARFRMFPFLERRGRKIDDYGEGLDIGQWVR 618
Query: 475 KDEDMDQAAMHIGGDDGK----LDEGSASLILDAK--PSKVVSNELTVQVKCLLIFIDYE 528
K +++++ + K +DE DA PSK V+ TV++ + F+D +
Sbjct: 619 KGKEIEEEGETEEVREAKRRKEMDEEKHQ---DAPEPPSKYVTEIKTVELHAYVFFVDMD 675
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTS 586
G+ DG+++KT+++ + P K+++V + +ATE+L + + ++ P + +T+ +
Sbjct: 676 GQLDGQALKTVITDLQPRKIIIVRSTPQATENLLDYFRSASLITHDIHIPALYQTLRIGE 735
Query: 587 DLCAYKVQLSEKLMSNVLFK--KLGDYEIAWVDAEVGKTENGMLSLLPIST----PAP 638
+ +Y + L + + +++ K K +EI VD ++ + + L S PAP
Sbjct: 736 HVQSYSLILGDSISASLAGKWSKFEGFEITMVDGKIAFSAGSTVPHLETSNAVIEPAP 793
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 633 ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGG- 690
+ T P S+ VGDL++A LK L+S I EFAG G L CG V+ + AG
Sbjct: 850 VQTAVPLPTSLFVGDLRLAVLKNKLASLNIPAEFAGEGVLVCGPGVSTPETAKAGSLVAV 909
Query: 691 -GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
GT +IV+EG + + Y+ +R LY F ++
Sbjct: 910 RKVGTGEIVLEGTVGKVYFDVRKALYGSFAMV 941
>gi|336261956|ref|XP_003345764.1| hypothetical protein SMAC_05921 [Sordaria macrospora k-hell]
gi|380090100|emb|CCC12183.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1003
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 233/958 (24%), Positives = 360/958 (37%), Gaps = 287/958 (29%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L ++A T+ +LL+H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLRELGRIAPTLSLILLTHATVP 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------LSRRSVTRLTYSQ 115
HL A + K PV++T PV LG D Y +S S+ ++Y+
Sbjct: 66 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 125
Query: 116 NYHLSGKGE-----------------------------------------GIVVAPHVAG 134
Y + E G+ + + +G
Sbjct: 126 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 185
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 180
H LGGT+W I E ++YAVD+N +E G V+E +P L+
Sbjct: 186 HTLGGTIWHIQHGLESIVYAVDWNHSRENVFAGAAWLSGNHGGAGSTQVIEQLHKPTALV 245
Query: 181 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 239
+ + ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 CSSRTPDASLSRLKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 305
Query: 240 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 278
+ ++ SST+ +S LEWM D+I K FE SR N
Sbjct: 306 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDNIIKEFEAFADESRRNNRRDEGNHQTG 365
Query: 279 --AFLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F K++ LL K+++ D P K++LAS ASL+ GFS DI A+D +
Sbjct: 366 PGPFDFKYLRLLERKAQIEKILKQSEDTEPRA-KVILASDASLDWGFSKDILKSIAADAR 424
Query: 329 NLVLFTERGQFG-----TLARML-----------------------QADPPPKAVKVTMS 360
NLV+ TE+ F ++AR L Q + ++V +
Sbjct: 425 NLVILTEKPNFEPNHKPSIARTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEVETA 484
Query: 361 RRVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPD 403
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 485 ERKGLEGDELNVY---QQWLATQRQLQATLQSGGTTTLEAPGDVLDDADTDTDTDSEGSD 541
Query: 404 NNLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMF 451
G + I A AS V +D ILI D V MF
Sbjct: 542 TEQQGKALNIATTMAQASRKKVA-----LKDEDLGVTILIKKENTYDFNVRGKKGRDRMF 596
Query: 452 PFYENNSEWDDFGEVINPDDYIIKD-----------------------------EDMDQA 482
P D+FGE+I P+DY+ + ED+ A
Sbjct: 597 PVAMRRRRADEFGELIRPEDYLRAEEREDAENAEAGQANNNTQELEGLGKKRKWEDVGTA 656
Query: 483 AMHIGG----------DDGKLDEGSA---------------SLILDAK------PSKVVS 511
GG D +L G A S + D + P+K+V
Sbjct: 657 GRGRGGLGPNKRPHHNDRRRLSAGEADAAPFSENGPAGDDLSDLEDEEDDTLNGPAKLVV 716
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
+ T+ V + F+D+ G D RS+ ++ + P KLVLV G + T L K +
Sbjct: 717 TKETIPVHLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALAADVKKLLIA 776
Query: 572 H---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV------ 616
V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 777 QSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTVTGLLLP 836
Query: 617 ----------DAEVGKT---ENG--------------------------MLSLLP----- 632
DA+ K E+G L L+P
Sbjct: 837 GGEFQPTSTEDADSAKRPKLEDGSAPSEPSTALVKTGTNTLPTTTASLPTLDLVPPTLAS 896
Query: 633 -ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 688
+S + + + VG+L++ADL+ + S G +VEF G G L + V +RK G +
Sbjct: 897 SLSVRSQAAQPLHVGELRLADLRRAMLSAGHKVEFKGEGTLLIDDVVVVRKSTAQGGR 954
>gi|154292337|ref|XP_001546744.1| hypothetical protein BC1G_14624 [Botryotinia fuckeliana B05.10]
Length = 901
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 221/882 (25%), Positives = 343/882 (38%), Gaps = 235/882 (26%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GIKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR---------------RSVTR------------LTYSQNY 117
++T PV LG + D Y S +S T+ L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYCSTPLASTIIPTTSSFLLQSPTKEEINYYFSLVRPLKYSQPH 145
Query: 118 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 165
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 222
V+E +P LI + P R +R E+ D I ++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGAR 262
Query: 223 VLELLLILEDYWAEHSL-------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 274
++EL +LE W + + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTENQEEESAFKSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 275 ----------SRDNA---------FLLKHVTLLINKSELD---NAPDG-----PKLVLAS 307
R NA F KH+ LL K ++D N D K++LAS
Sbjct: 323 PGHEEQRTGQQRRNAEEAKQHIGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVILAS 382
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ-----------ADPP 351
S+E GFS ++ + A D KNL++ TER G G L R L ++P
Sbjct: 383 DTSIEWGFSKEVLCKIADDDKNLLILTERLNPISGAPG-LGRTLWSWWEERRDGVISEPS 441
Query: 352 P------------KAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKA 398
+ +++ +R+PL G +L Y++ T+ + + L+ E+ A
Sbjct: 442 SNGGVLEQVYGGGRDLEIKEPKRIPLEGNDLTVYQQWLATQRQLQTTLQPGGATALEASA 501
Query: 399 SL-------------GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-------- 437
+ +N G + I A A+ + G D+ +
Sbjct: 502 DIVDDASSDSSSDSDDSENEQQGKALNISATMGQANRKKI---GLSDEDLGVNILLRKKG 558
Query: 438 --DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIG----- 487
D V MFP DDFGE+I P +++ +DE Q G
Sbjct: 559 VHDFDVRGKKGRDKMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVDGQEPQRPGKYDTK 618
Query: 488 ---GDDGKLDEGSASLILDA----KPSKVVSNE--------------------------L 514
G K D+ +AS A K ++ +NE L
Sbjct: 619 DTLGKKRKWDDVAASGKRRASNEGKRQQISNNEDGSVADSPEEDDLMDIVEEEIPGPSRL 678
Query: 515 TVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ +K L I F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 679 EISIKTLKINLRIAFVDFSGLHDKRSLQMLIPLIQPRKLILVGGMKEETLALASDCRKLL 738
Query: 570 CP------HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIA 614
VYTP++ ID + D A+ V+L++ L+ + ++ + G E
Sbjct: 739 GSTKEKLIDVYTPEVGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKGLGIVTLTGRLETT 798
Query: 615 WVDAEVGKTENG------------------------------MLSLLPISTPAPPHKSVL 644
+D++ +E +L +LP S A +SV
Sbjct: 799 HIDSDSHNSEGANKKQKMIKEESEETPTHAALDSAKAVVDMPILDVLP-SNMASATRSVA 857
Query: 645 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
VGDL++ DL+ + S G+ E G G L V +R+
Sbjct: 858 QPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRE 899
>gi|156042700|ref|XP_001587907.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980]
gi|154695534|gb|EDN95272.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 936
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 235/931 (25%), Positives = 361/931 (38%), Gaps = 271/931 (29%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GVKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRR--------------------------SVTR-LTYSQNY 117
++T PV LG + D Y S S+ R L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYSSTPLASTVIPTTSSFLLQPPTKEEINYYFSLVRPLKYSQPH 145
Query: 118 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 165
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 222
V+E +P LI + P R +R E+ D I +++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIKSSIKRGGIVLIPTDSGAR 262
Query: 223 VLELLLILEDYW-----AEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 274
++EL +LE W E S + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTGNQEEESAFRSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 275 -------------------SRDNA--FLLKHVTLLINKSELD---NAPDG-----PKLVL 305
S+ NA F KH+ LL K ++D N D K++L
Sbjct: 323 PGHEEQQTGQQRRHAYSDESKQNAGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVIL 382
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ----------ADP 350
AS S+E GFS ++ + A D KNL++ TE+ G G L R L A
Sbjct: 383 ASDTSIEWGFSKEVLRKIADDDKNLLILTEKLNRIDGVTG-LGRTLWSWWEERRNGVATE 441
Query: 351 PP-------------KAVKVTMSRRVPLVGEELIAYEE---EQTRLKKE------EALKA 388
P + +++ +R+PL G +L Y++ Q +L+ AL+A
Sbjct: 442 PSSNGGNLEQVYGGGRDLEIREPKRIPLEGNDLTVYQQWLATQRQLQNTLQPGGATALEA 501
Query: 389 S-----------------LVKEEESK-----ASLGPDNN----LSGDPMVIDANNANASA 422
S E++ K A++G N LS + + I+
Sbjct: 502 SADIVDDASSDSSSDSDDSETEQQGKALNISATMGQANRKKIGLSDEDLGINILLRKKGV 561
Query: 423 DVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDM 479
+ G + RD MFP DDFGE+I P +++ +DE
Sbjct: 562 HDFDVRGKKGRD--------------KMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVD 607
Query: 480 DQAAMHIG--------GDDGKLDEGSAS----LILDAKPSKVVSNE-------------- 513
Q G G K D+ +AS + + K +V +NE
Sbjct: 608 GQEPQRPGKYDTKDTLGKKRKWDDVAASGKRRVTNEGKRQQVGNNEDDSVADVLEEDDLV 667
Query: 514 ------------LTVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
L + V+ L I F+D+ G D RS++ ++ + P KL+LV G +
Sbjct: 668 DIVEEEIPGPSRLDISVETLKINLRIAFVDFAGLHDKRSLQMLIPLIQPRKLILVGGMKD 727
Query: 557 ATEHLKQHC------LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-- 608
T L C K VYTP+I ID + D A+ V+L++ L+ + ++ +
Sbjct: 728 ETLALANDCRQLLGSTKDKLVDVYTPEIGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKG 787
Query: 609 -------GDYEIAWVDAEVGKTENG------------------------------MLSLL 631
G E +D + +E +L +L
Sbjct: 788 LGIVTLTGRLETTNIDTDSHDSEGANKKQKMLTGESEETPTQAALDSAKAVVEMPILDVL 847
Query: 632 PISTPAPPHKSVL----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAG 686
P S A +SV VGDL++ DL+ + S G+ E G G L V +RK
Sbjct: 848 P-SNMASATRSVAQPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRK----- 901
Query: 687 QKGGGSGTQQIVIE--GPLCEDYYKIRAYLY 715
+GT +I +E G +Y ++ +Y
Sbjct: 902 -----TGTGRIEVESVGVTTSSFYAVKGKIY 927
>gi|380480161|emb|CCF42595.1| RNA-metabolising metallo-beta-lactamase [Colletotrichum
higginsianum]
Length = 979
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 235/943 (24%), Positives = 355/943 (37%), Gaps = 280/943 (29%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD LQ L K T+ +LL+H
Sbjct: 6 PLQGALSESAASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------- 105
HL A + K L PV++T PV LG D Y S
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPHGSLNEAAYSF 125
Query: 106 -----------------RSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGHL 136
+TR L YSQ + G+++ + AGH
Sbjct: 126 SQQPTADSDFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLMITAYNAGHS 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ KE V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGAEVIEQLRKPTALVCSSR 245
Query: 185 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 238
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W S
Sbjct: 246 GAEKVAQAGGRAKRDEQLVDMIKTCVSRGGTALVPVDSSARVLEIAYLLEHAWRVDSESD 305
Query: 239 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 279
+ +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 NSSLKSAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRRTNGAEAKSKEGVP 365
Query: 280 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F +++ L+ ++++ DN +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSGSGDNVQAEGRVILASDDTLEWGFSKDLIRGLAKDSRNLV 425
Query: 332 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 363
+ T+ R + ++AR L + D + ++V ++R
Sbjct: 426 ILTDKPAKSRAEQPSIARTLWDWWTERRDGVSVEQSSNGNSIELVYGGGRELEVQEAKRQ 485
Query: 364 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 404
L G+EL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGDELNVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSESSSDSGESDN 540
Query: 405 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452
G + I A+ +++ G Y D + G S FP
Sbjct: 541 ERQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGREKS----FP 595
Query: 453 FYENNSEWDDFGEVINPDDYIIK---------------DEDMDQAAMHIGGDDG------ 491
D FG+VI P+DY+ D D D+ DDG
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEKEEEAQENVELRGDGDDDRLGKKRKWDDGNNRASN 655
Query: 492 --KLDEGSASLILDAK-----------------------PSKVVSNELTVQVKCLLIFID 526
+ + +++ LDA PSK++ + V V + F+D
Sbjct: 656 KRQNNRAASADDLDANAAGDDLTDELDDVEDTVEEEIQGPSKLLVSREKVMVNLRIGFVD 715
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTP 576
+ G D RS+ ++ + P KL+LV G+ + T L C K + H VYTP
Sbjct: 716 FSGLHDKRSLNMLIPLIQPRKLILVGGTPDETTALATDCKKLLAQHTGASEENGIDVYTP 775
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKK---LG------------------------ 609
+ +D + D A+ V+L++ L+ + ++ LG
Sbjct: 776 AMGTWVDASVDTNAWVVKLADNLVKKLKWQNVRGLGVVTVTGQLIAEALAKDKLPEKDDG 835
Query: 610 -------DYEIAWVDA-EVGKTENG-----------------MLSLLPISTPAPPHKSVL 644
+ E A VDA E K E+ L LLP S A +SV
Sbjct: 836 ANKRQKTEAEDADVDADEAVKDEHQETQVEKAEEAEEIEVVPTLDLLP-SNMASAVRSVA 894
Query: 645 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
VGDL++ DL+ + S G EF G G L V +RK
Sbjct: 895 QPLHVGDLRLTDLRRAMQSAGYTAEFRGEGTLVINGAVAVRKT 937
>gi|310799284|gb|EFQ34177.1| RNA-metabolising metallo-beta-lactamase [Glomerella graminicola
M1.001]
Length = 984
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 200/812 (24%), Positives = 315/812 (38%), Gaps = 222/812 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD LQ L K T+ +LL+H T
Sbjct: 6 PLQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR---------RSVTRLTYSQ 115
HL A + K L PV++T PV LG D Y S S+T YS
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPLGSLTEAAYSF 125
Query: 116 NYHLSGKGE---------------------------------------GIVVAPHVAGHL 136
+ + E G+++ + AGH
Sbjct: 126 SQQSTAGSEFLLQAPSPAEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLIITAYNAGHS 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ KE G V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGADVIEQLRKPTALVCSSR 245
Query: 185 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW------- 234
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W
Sbjct: 246 GAEKVAQAGGRAKRDEQLIDMIKTCVARGGTALIPVDSSARVLEIAYLLEHAWRADSESD 305
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 279
+ + +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 SSSLKSAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRKANGTEAKSKEGVP 365
Query: 280 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F +++ L+ ++++ DN +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSGSGDNVQAEGRVILASDDTLEWGFSKDLIRGLAKDSRNLV 425
Query: 332 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 363
+ T+ R + ++AR L + D + ++V ++R
Sbjct: 426 ILTDKPAKSRAEQPSIARTLWDWWTERRDGVAVEQSSNGNNLELVYGGGRELEVQEAKRQ 485
Query: 364 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 404
L GEEL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGEELNVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSDSSTDSGESDN 540
Query: 405 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452
G + I A+ +++ G Y D + G S FP
Sbjct: 541 EQQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGRERS----FP 595
Query: 453 FYENNSEWDDFGEVINPDDYIIK---------------DEDMDQAAMHIGGDDG------ 491
D FG+VI P+DY+ D+D D+ DDG
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEREEEAPENDGLRGDDDEDRLGKKRKWDDGNNRFSN 655
Query: 492 --KLDEGSASLILDAK-----------------------PSKVVSNELTVQVKCLLIFID 526
+ + +++ +DA PSK+V + V V + F+D
Sbjct: 656 KRQNNRAASADHVDANAAGDDVTDELDEVEDTVEEEIQGPSKLVVSREKVMVNLRIAFVD 715
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTP 576
+ G D RS+ ++ + P KL+LV G+ + T L C + VYTP
Sbjct: 716 FSGLHDKRSLNMLIPLIQPRKLILVGGTPDETRTLAADCKMLLAQQSGASEENGIDVYTP 775
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 608
+ +D + D A+ V+L++ L+ + ++ +
Sbjct: 776 AMGTWVDASVDTNAWVVKLADSLVKKLKWQNV 807
>gi|429857613|gb|ELA32471.1| cleavage and polyadenylylation specificity [Colletotrichum
gloeosporioides Nara gc5]
Length = 962
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 226/929 (24%), Positives = 356/929 (38%), Gaps = 269/929 (28%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD L+ L K T+ +LL+H T
Sbjct: 6 PLQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLRELEKQVPTLSIILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------- 105
HL A + K L PV++T PV LG D Y S
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPHGSLSEAAYSY 125
Query: 106 -----------------RSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGHL 136
+TR L YSQ + G+++ + AGH
Sbjct: 126 SQQPTGDSDFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLMITAYNAGHS 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVYAGAAWLGGAGGGGAEVIEQLRKPTALVCSSR 245
Query: 185 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------ 235
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W
Sbjct: 246 GAEKVAQAGGRAKRDEQLVDIIKLCVSRGGTCLIPVDSSARVLEIAYLLEHTWQVDSETD 305
Query: 236 EHSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 279
++SL +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 DNSLKAAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRKANGADGKTKEAVP 365
Query: 280 FLLKHVTLLINKSELD--------NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F +++ L+ +++++ N +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSSSGGNVQSEGRVILASDDTLEWGFSKDLIKGLAKDSRNLV 425
Query: 332 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 363
+ T+ R + ++AR L + D + +++ ++R
Sbjct: 426 VLTDKPPKSRAEQPSIARTLWDWWTERQDGATVEQTSSGDSIEFVYGGGRELEIQEAKRQ 485
Query: 364 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 404
L G+EL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGDELTVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSESSSDSGESDN 540
Query: 405 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452
G + I A+ +++ G Y D + G S FP
Sbjct: 541 EQQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGRERS----FP 595
Query: 453 FYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIGGDDGKL------DEGS---ASL 500
D FG+VI P+DY+ K+ED+ M D+ +L D+ S A+
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEKEEDVPDTEMRGDDDEDRLGKKRKWDDASTKGANK 655
Query: 501 ILDAK--------------------------------PSKVVSNELTVQVKCLLIFIDYE 528
+AK PSK++ + V V + F+D+
Sbjct: 656 RQNAKTAGDDRDGTASEDHVADELDDVEDTVEEEIQGPSKLILSSEKVPVNLRIAFVDFS 715
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTPQI 578
G D RS+ ++ + P KL+LV G+ E T L C K + V+TP +
Sbjct: 716 GLHDKRSLNMLIPLIQPRKLILVGGTTEETTALATDCKKALAAQIGASEETVVDVFTPSM 775
Query: 579 EETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI----------AWVDAEVGKTENG-- 626
+D + D A+ V+L++ L+ + ++ + I A ++ + ++G
Sbjct: 776 GTWVDASVDTNAWVVKLTDSLVKKLKWQNVRGLSIVTITGQLVAEALAKEKLAEKDDGAN 835
Query: 627 -------------------------MLSLLPI-------STPAPPHKSVLVGDLKMADLK 654
L LLP+ S P H VGDL++ DL+
Sbjct: 836 KRQKTEAEDADAAQEDADAEVEVVPTLDLLPMNMASAVRSVAQPLH----VGDLRLTDLR 891
Query: 655 PFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
+ S G EF G G L V +RK
Sbjct: 892 RAMQSAGYMAEFRGEGTLVINGAVAVRKT 920
>gi|296424981|ref|XP_002842022.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638279|emb|CAZ86213.1| unnamed protein product [Tuber melanosporum]
Length = 975
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 172/612 (28%), Positives = 257/612 (41%), Gaps = 139/612 (22%)
Query: 8 TPLSGVFNENPL--SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++ S L +G LID GW++ FD +L L + TID +LL+HP
Sbjct: 5 TPLLGAQSDSQACQSLLELENGIKVLIDVGWDESFDVKMLAELERHTPTIDLILLTHPTL 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
H+GA +A K + S PV+ST PV LG L + D YLS
Sbjct: 65 AHMGAYAHACKHIPSFSSIPVYSTFPVSNLGRLLLQDIYLSTPLASTRLLDSAAPPVPLP 124
Query: 106 ----------RSVTRLTYSQNY-------HLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 148
+ L YSQ +SGK I + + AGH LGGT+WKI +
Sbjct: 125 PTSAEIDSYCTKIVTLKYSQPTPLHSAVARVSGKLGSITITAYSAGHSLGGTIWKIQQAQ 184
Query: 149 EDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNA--LHNQPPRQQR-E 197
E ++YAVD+N +E L G +E+ +P LI A N+ + R++R E
Sbjct: 185 ESIVYAVDWNHSRENCLRGAGFLSGGGVSVETLGKPTALICSARNSEVVSMAGGRKKRDE 244
Query: 198 MFQDAISKT-LRAGGNVLLPVDSAGRVLELLLILEDYWAE--------HSLNYPIYFLTY 248
M DAI KT L+ G VL+P DS GRVLEL+ +LE W + ++ +
Sbjct: 245 MLLDAIKKTALKNSGTVLIPTDSVGRVLELVYLLEHAWRKDQELSSRAKGKGIGLFLVGR 304
Query: 249 VSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA------------FLLKHVT 286
V S LEWM + + + FE+ RD+A F H+
Sbjct: 305 RVRRLGQVVGSMLEWMDEGVVREFESIAGGDRRGNRQRDDAEGKGNDGNKAGPFDFLHLN 364
Query: 287 LLINKSELD----NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER--GQFG 340
L+ + L+ + + K+++AS +SL GFS + + ASD KNLV+ TER G+ G
Sbjct: 365 LVSTQGHLNRILNDGNERGKVIIASDSSLGWGFSREALMRLASDEKNLVVLTERSDGKLG 424
Query: 341 TLARMLQ-------------------ADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 381
+ Q + ++ + R PL G+EL AY +
Sbjct: 425 WAGNLWQQWKEKTGSGGEANATDWQEVSLDGQRAELDIPHRTPLEGQELEAYNRHFAAQQ 484
Query: 382 KEEALKASLVKEEESKASLGPD---------------NNLSGDPMVIDANNANASADVVE 426
+ SL+ +S+G + + G + AN+ SA V
Sbjct: 485 ALTSQHQSLLSNSGLPSSMGAEPDDDDASSSSDDDSDSERQGKALTT-ANSKKISAATVM 543
Query: 427 PHGG---RYR--------DILIDGF------VPPSTSVAPMFPFYENNSEWDDFGEVINP 469
G RY +IL+ G V + MFPF D++GEV+
Sbjct: 544 LGGATPSRYGAGKVDIGINILLRGKGVYDYDVRGAKGRNRMFPFVMRRRRVDEYGEVVRA 603
Query: 470 DDYIIKDEDMDQ 481
D+Y+ +E ++
Sbjct: 604 DEYMRAEEKAEE 615
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 56/216 (25%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK+ S ++ + ++ + FID+ G D R ++ +L + P KL+LV G T+ L C
Sbjct: 705 PSKITSTKIAILMRFKVAFIDFAGLHDSRILRMLLPLIGPRKLILVGGREHETKSLANDC 764
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
K + V+ PQI ++ D A+ ++LS+ L+ N+ ++ +
Sbjct: 765 RKLLSGRGTLSGRGESGADTDVFFPQIGSKVNAGVDTNAWAIKLSDNLVRNLKWQNVRGL 824
Query: 612 EIAWVDAEVGKTE-------NG--------------------------MLSLLP------ 632
+ + V + + NG +L +LP
Sbjct: 825 GVVHLIGRVTEAQDKKDECRNGKKVKLSKSPEAESKEGGSQVEQKNALVLDVLPPALAAA 884
Query: 633 ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
I + A P + VGD+++ADL+ L G+ EF G
Sbjct: 885 IRSVAQP---IHVGDIRLADLRRVLLDDGLTAEFRG 917
>gi|342320223|gb|EGU12165.1| Cleavage and polyadenylation specificity factor subunit [Rhodotorula
glutinis ATCC 204091]
Length = 1010
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 199/815 (24%), Positives = 335/815 (41%), Gaps = 209/815 (25%)
Query: 90 VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI----- 144
++L + D +L+ + + ++Q HL+G +G + H +GH LGG+++ +
Sbjct: 211 AWKLTTQEIRDAFLA---INAVRWTQPIHLTGPLKGYTLVAHRSGHTLGGSLYTLRPSLS 267
Query: 145 -----TKDGEDVIYAVDYNRRKEKHLN-------GTVLESFVRPAVLITDAYNALHNQPP 192
++YA +N KE HL+ G V ++F R V+I A +
Sbjct: 268 SSLSPASSASSLLYAPLFNHVKEHHLDPTSLLNAGNVDDNFRRMGVMIVGAERSKVVNIK 327
Query: 193 RQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYV 249
R RE D I+ TL+AGG++LLP D + R+ ELL++LE +W +L +P+ ++
Sbjct: 328 RIDRERKMLDLITSTLQAGGSILLPTDPSARLFELLILLETHWQFANLGQQFPLCLISRT 387
Query: 250 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN-----APDGPKLV 304
+ +V+S EWMG I S A LK L I S LD P PKL+
Sbjct: 388 GREAVGFVRSLTEWMGGQIAGS------GADKLKFANLRIFSS-LDEIATTIPPSVPKLI 440
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD--------------- 349
L ++L G+S +F+++A + NLVL T + G+LAR L +
Sbjct: 441 LTVPSTLSYGYSRALFLDFARNAANLVLLTGLSEPGSLARWLAREVWEPQQEKGCKYGEG 500
Query: 350 ------PPPKAVKVTMSRRVPLVGEEL---IAYEEEQTRL--KKEEALKASLVKEEESKA 398
+ +++ + R+V L G+EL +A E E L +++ AL+ S +++
Sbjct: 501 KVGKEVKMDQTIELEIKRKVYLEGDELEAHLAAEREAAELVARQQAALERSRRMLQDNAG 560
Query: 399 SLGPDNNLSG------------------DPM-------------------VIDANNANAS 421
D + S PM +DA + S
Sbjct: 561 GDSDDESDSEGEEADAAEEANGAAVDEDQPMPVRRRRLGGFTGGAGAWDEFLDAETLSGS 620
Query: 422 ADVVEPHGGRYRDILIDGFVPPSTSVA-----PMFPFYENNSEWDDFGEVINPDDYIIKD 476
A GG+ DI + G ++ MFP E D +GE I+ + ++ +
Sbjct: 621 A------GGQVFDIYVRGSYGVRSAAGGLPRFRMFPVVERKRRVDAYGEAIDVEGWLRRG 674
Query: 477 EDMD----QAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
+D D A +G + ++ P K V + + V ++ LL +D EG +D
Sbjct: 675 QDDDPLSPNNAQVLGKRAREEEKEPEPEEKPDPPHKYVVDRVEVPLQALLFVVDMEGLSD 734
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCA 590
GR++KTIL + P KLV+V G +EA + L C + + +YTP + ETI V +
Sbjct: 735 GRALKTILPQINPRKLVIVDGPSEAIQDLAGACKAVTSMTEDIYTPSLGETIKVGEETKN 794
Query: 591 YKVQLSEKLMSNVLFKKLGDYEIAWV---------------------------------- 616
+ ++L + +M+ + ++ DY++A+V
Sbjct: 795 FSIRLGDSIMATLRLSRVEDYDVAYVSGIVHIDPESDLPVLERPTFADAASAPSALPAPD 854
Query: 617 ----------------DAEVGKTENGML------SLLPISTPAPPHKSVLVGDLKMADLK 654
+AE E G S+LP P S+ +GDL++A LK
Sbjct: 855 GTDTTIASGDGGPAPTEAEQADAEEGASEEPADPSILPALKP-----SLFIGDLRLALLK 909
Query: 655 PFLSSKGIQVEFAG-GALRCG--------------------------EYVTIRKVGPAGQ 687
L++ + EF G G L CG ++V + A +
Sbjct: 910 ERLAALKVPSEFTGEGILVCGPAPPEAFDFDFSGAASRAGIDTRKGAKFVRDALLNEAME 969
Query: 688 KGGGS------GTQQIVIEGPLCEDYYKIRAYLYS 716
GG G ++V+EG E Y+ +R +Y+
Sbjct: 970 ASGGRVAVRKVGRGRLVLEGGPGETYFVVRRAVYA 1004
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 25/127 (19%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLL-----------QP----- 47
S+ +TPLS + P +YL+++D L+DCG D + L +P
Sbjct: 2 SITITPLSA--HPLPPTYLLTVDNAQILLDCGSYDKGREATLPSTSTSSALTDEPTSEQV 59
Query: 48 ------LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ 101
L K+A +++ VLLSHP LG LP+ + GL PV+ T P +G + ++
Sbjct: 60 TEYLSILRKLAPSLNLVLLSHPLLTSLGLLPFLRARCGLRCPVYGTLPTREMGRYAV-EE 118
Query: 102 YLSRRSV 108
++ RS
Sbjct: 119 WVEARSA 125
>gi|336373839|gb|EGO02177.1| hypothetical protein SERLA73DRAFT_86401 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386654|gb|EGO27800.1| hypothetical protein SERLADRAFT_447017 [Serpula lacrymans var.
lacrymans S7.9]
Length = 930
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 156/523 (29%), Positives = 233/523 (44%), Gaps = 136/523 (26%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSLL------------- 45
+ TPLSG + PL+YL+ +D L+DCG W+ S +
Sbjct: 2 ITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGSPDWSPEPSSSAVKSEDLRQHSYHWE 61
Query: 46 ---QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA------PVFSTEPV------ 90
Q L + + T+D VLLSH D H G YA + GL A PV +T +
Sbjct: 62 EYCQALRECSPTVDLVLLSHGDLAHTGLYAYAYSRWGLKAPAYSTLPVQATGRIATNEDV 121
Query: 91 -------------------------------------------YRLGLLTMYDQYLSRRS 107
Y +L ++D Y +
Sbjct: 122 EGIREEQDVDTDSENQHHNSALEGTESGSQKSPESQPKKTSGKYIATVLEVHDAY---DA 178
Query: 108 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLN 166
+ L YSQ HL GK +GI + P+ AGH LGGT+WKI + ++YAVD N +E+HL+
Sbjct: 179 MNTLRYSQPTHLQGKCQGITITPYNAGHSLGGTIWKIRSPSAGTILYAVDINHMRERHLD 238
Query: 167 GTVL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
GTVL E+ RP +LITDA A R+ R+ D IS TL + ++LLP
Sbjct: 239 GTVLVRPASGGIVEALARPDLLITDAERANVTTSRRKDRDAALIDTISATLSSRSSLLLP 298
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS----- 271
DS+ RVLELL++L+ +W YPI L+ + +V+S +EW+G +++K
Sbjct: 299 CDSSTRVLELLVLLDQHWKFADFRYPICLLSRNGREMLTFVRSMMEWLGGTVSKEDVGVD 358
Query: 272 -------FETSRDN----------AFLLKHVTLLINKSEL--DNAPDGPKLVLASMASLE 312
+ RD+ A KH+ N L + PKL+LA ASL
Sbjct: 359 GSGKSGGNKRRRDDEGEDEALGAFALRFKHLEFFPNPQALLQTYSSKDPKLILAVPASLS 418
Query: 313 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------P 352
G S +F ++A N+VL T RG+ GTL R+L +AD
Sbjct: 419 HGPSRLLFSDFAVVPDNVVLLTSRGEEGTLGRILFDKWNDSQRADDKWDKGKIGSNIMMD 478
Query: 353 KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEAL-KASLVKEE 394
+K+ ++ ++PL G EL Y ++ K++EA+ +A+L + +
Sbjct: 479 GTMKLKINSKIPLQGAELEEYLAKERVAKEKEAVQQAALARNQ 521
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 70/344 (20%)
Query: 434 DILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAA 483
DI I G V STS MFP+ E D++GE I+ ++ K + +++ A
Sbjct: 599 DIYIKGNVSKSTSFFKTVGGQPQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVLEEDA 658
Query: 484 M--HIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
+ K E A I+ PSK V++++ +Q+ C L+F+D EG DGR++KTI+
Sbjct: 659 ESDELKEAKRKQAEEEAKKIVREPPSKFVTSDVEIQLACRLLFVDMEGLNDGRAVKTIVP 718
Query: 542 HVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKL 599
V P K+++VH AT L C ++ + +Y P ETI + + + LS++L
Sbjct: 719 QVNPRKMIIVHAPDSATSALIDSCANIRAMTKDIYAPSTGETIRLGQQTNTFSILLSDEL 778
Query: 600 MSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP--------------------- 638
++ + + D E+ +V G+ + + S +P+ PA
Sbjct: 779 LNTLKMSRFEDNEVGYV---TGRVASHVSSTIPVLEPAISSALPSDSSDRKLFLRGRQLG 835
Query: 639 -------PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-------------EYV 677
PH S ++G+LK+ LK L+S GIQ E G G L CG E V
Sbjct: 836 SRPTQTLPH-STMIGELKLTALKTRLASVGIQAELIGEGVLICGAGAKRNQPSDTLEETV 894
Query: 678 TIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
++RK ++ +EG + + YY +R +YS L+
Sbjct: 895 SVRKTARG----------RVELEGNVSDVYYTVRKEIYSLHALV 928
>gi|367047989|ref|XP_003654374.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
gi|347001637|gb|AEO68038.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
Length = 1015
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 228/950 (24%), Positives = 354/950 (37%), Gaps = 276/950 (29%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +E+ S L+ +DG L+D GW++ FD L+ L K T+ +LL+H
Sbjct: 5 TPLQGALSESTASQSLLELDGGVKVLVDVGWDESFDAERLRELEKHIPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T PV LG D Y S
Sbjct: 65 DHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASTPVAATTISPTSLAEVAYS 124
Query: 106 ------------------RSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGH 135
+ R L YSQ + G+ + + +GH
Sbjct: 125 YAQTSSADHNLLLQPPTPEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 181
LGGT+W I E ++YAVD+N+ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFSGAAWLGGGLGGAGGAEVIEQLRKPTALVC 244
Query: 182 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-AEHSLN 240
+ ++ E ++I + GG VL+PVDS+ RVLEL +LE W AE + +
Sbjct: 245 SSRTPETAIARGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELAYLLEHAWRAEVAKD 304
Query: 241 YPIYFLTYVS------SSTIDYVKSFLEWMGDSITKSFET----------------SRDN 278
++ T V ST+ +S LEWM DSI + FE RD
Sbjct: 305 NDVFKSTKVYLAGRSIGSTMRNARSMLEWMDDSIVREFEAVAGGTRGANSGAGGGKGRDA 364
Query: 279 A-FLLKHVTLLINKSEL---------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F K++ LL K+++ D+ P G K++LA+ ASLE GFS ++ A D +
Sbjct: 365 GPFDFKYLRLLERKAQVERILQQEAGDSEPKG-KVILATDASLEWGFSKEVLKAIAGDAR 423
Query: 329 NLVLFTERGQFG----TLARML-----------------------QADPPPKAVKVTMSR 361
NLV+ TE+ ++AR L Q + +++T +
Sbjct: 424 NLVVLTEKPNLSHGRTSIARTLWEWWKERKDGVAVEQTSSGDTFEQVYGGGRELELTETT 483
Query: 362 RVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 420
R L G+EL Y++ T+ + + L++S ES A + D + +
Sbjct: 484 RQALEGDELGLYQQWLATQRQLQATLQSSGAAALESSAEVVDDASETTTESEESETERQG 543
Query: 421 SADVVEP---HGGRYRDILID---GF-------------VPPSTSVAPMFPFYENNSEWD 461
A V R + +L D G V MFP D
Sbjct: 544 KALNVSTTIGQASRKKVVLKDEDLGITILLKKRGVYDFDVRGKKGRERMFPTVIRRKRND 603
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL---------------------------- 493
+FGE+I P++Y+ +E D D +
Sbjct: 604 EFGELIRPEEYLRAEERADADGQEEAQDGNRQEQGLGKKRRFDDVGGAAKGASGPNKRPQ 663
Query: 494 ------DEGSASLILDAK-----------------PSKVVSNELTVQVKCLLIFIDYEGR 530
DE A+ + D + P+K+V TV V + F+D+ G
Sbjct: 664 LKRALSDEAEAASLSDGQGGDELDQLEDEEEAVIGPAKLVVTSQTVSVNLRIAFVDFSGL 723
Query: 531 ADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-----------VYTPQIE 579
D RS+ ++ + P KL+LV G+ + T L C K + V+TP +
Sbjct: 724 HDKRSLHMLIPLIQPRKLILVAGAEDETLALAADCKKLLGAQLTSESSQSSVDVFTPAVG 783
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------------GDYEIAWVDA-EVG-- 621
+D + D A+ V+L++ + + ++ + G+ + DA E G
Sbjct: 784 AAVDASVDTNAWVVRLADPFVKRLKWQNVRGLGIVTVTGLLLPGGEIALQSADAPEAGDG 843
Query: 622 -------KTENGMLSLLPIS-------------------------TPAPPHKSVL----- 644
K E+G S P + TPA P V+
Sbjct: 844 DTANKRQKLEDGTTSTAPPAAAEPDGTATSTTSATTTTNNNTKPPTPALPTLDVVPPTLA 903
Query: 645 -----------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
VGDL++ADL+ + G EF G G L V +RK
Sbjct: 904 SAVRSAARPLHVGDLRLADLRRAMLGAGHTAEFRGEGTLLIDGTVAVRKT 953
>gi|406694795|gb|EKC98117.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 8904]
Length = 958
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 194/739 (26%), Positives = 320/739 (43%), Gaps = 121/739 (16%)
Query: 5 VQVTPLSG----VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
+ +TPLS V + P+SY + +D L+D G D + S Q + I
Sbjct: 2 ITLTPLSSSATSVSPDEPVSYFLELDDARILLDMGQRD-YRASAQQTSWEYEEKI----- 55
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
T +LG YA GL PV++T+P +G + + S R+
Sbjct: 56 -RDPTQYLGLYAYARAHWGLKCPVYATQPTVEMGRVVSLAEAESWRAECPVSDEEGEFKG 114
Query: 108 ---------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDV 151
+ + Y+Q HL G+ +++ P +GH+LGGT++KI + V
Sbjct: 115 PFVPTTEEIHEAFDHIKAIRYNQPLHLGGELSHLLLTPFPSGHVLGGTLFKIRSPTSGTV 174
Query: 152 IYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQD 201
+YAV N E+HL+G V E RP +LI + + R++RE D
Sbjct: 175 LYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGRSNAVNAKRRERETAILD 234
Query: 202 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----------EHSLNYPIYFLTYVSS 251
++ TL G +VL+P D++ R+LELL++L+ +W+ N+P+ ++ +
Sbjct: 235 LVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFKRTAAPGGPAAQWNHPLCLVSRTAQ 294
Query: 252 STIDYVKSFLEWMG--------DSITKSFETSRDN-------------AFLLKHVTLLIN 290
+ + +S LEWMG D + + + + A HV
Sbjct: 295 DMVSFARSLLEWMGGVVRESGADDVVAALDRRKGRKRKALVNLGSEYGALDFSHVQFFAT 354
Query: 291 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 346
EL + P + PKLVLA ++ G S +F AS N+VL T G+ TLAR L
Sbjct: 355 PEELLEKYPANRPKLVLAIPPTMSHGPSRTLFASMASVTGNVVLLTGHGEDRTLARELYA 414
Query: 347 ------------------QADPPPKAVKVTMSRRVPLVGEELIAYE-EEQTRLKKEEALK 387
A P +++ + + PL GEEL AYE E+ + ++E A +
Sbjct: 415 RWEAHQDEGAHYGHGKIGHATPMEGRLELELDAKEPLSGEELEAYETAEREKREREAAHQ 474
Query: 388 ASLVK-----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP 442
A+L + E + S ++ +GD + ANA A E DI + G
Sbjct: 475 AALERNNRMLEADDLESDSDSDSEAGDLAGLHQEGANAFAGDGEDARTMSFDIFVKGQSV 534
Query: 443 PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---GGDDGKLDEGSAS 499
+ MFP+ + D FGE ++ +I K ++++ K E +
Sbjct: 535 LRGTRFRMFPYIAKGRKVDSFGEGLDVGQWIRKGREIEEDGETEEVRAAKRRKAAEEEKA 594
Query: 500 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
PSK VS+ + V + + +ID G DG++I+TI++ +AP KLV+V + A+E
Sbjct: 595 KQAPEPPSKFVSSIVGVDLHASIAYIDMAGEHDGQAIRTIVTDLAPRKLVVVKSTTPASE 654
Query: 560 HLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSE---KLMSNVLFKKLGDYEIA 614
LK + + + + P + I + + +Y +QL + +L++ L + G YEIA
Sbjct: 655 ALKAYFAQTPKITHDAFYPGPYQPIQIGEHVQSYSLQLGDSMGRLLAGRLSRFEG-YEIA 713
Query: 615 WVDAEVGKTENGMLSLLPI 633
V GK S +PI
Sbjct: 714 MVQ---GKLAYATGSTVPI 729
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 632 PISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRC---------GEYVTIRK 681
P S P S+ +GDL++ LK L + GI +FAG G L C G V +RK
Sbjct: 867 PPSGPLTLPSSLFIGDLRLLALKNRLGTLGIPAQFAGEGVLVCGPGVEPGAKGSIVAVRK 926
Query: 682 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
+ ++G ++V+EGP+ Y+ +R LY +
Sbjct: 927 L----EEG------RVVLEGPVSGTYFAVRRELYGSY 953
>gi|389638668|ref|XP_003716967.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|351642786|gb|EHA50648.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|440474177|gb|ELQ42934.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae Y34]
gi|440484966|gb|ELQ64966.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae P131]
Length = 962
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 218/922 (23%), Positives = 350/922 (37%), Gaps = 255/922 (27%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E S L+ +DG LID GW++ FD L+ + K T+ +LL+H
Sbjct: 5 SPLQGALSEATASQSLLELDGGVKVLIDIGWDETFDVEKLKEVEKQVPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGLSA--PVFSTEPVYRLGLLTMYDQYLSRRS---------------- 107
HL AL + K L A P+++T+P LG + D Y S +
Sbjct: 65 PHLSALVHCCKNFPLFARIPIYATQPAIDLGRTLIQDLYSSTPAAATSIPDSALAEASYS 124
Query: 108 ---------------------------VTRLTYSQNYH-----LSGKGEGIVVAPHVAGH 135
+ L YSQ + S G+ + + AGH
Sbjct: 125 FSQTQTNGHGFLLQAPSPDEIAKYFSLIQPLKYSQPHQPLASPFSPPLNGLTITAYNAGH 184
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEK-------------HLNGTVLESFVRPAVLITD 182
LGGT+W I E ++YAVD+N ++ V+E +P L+
Sbjct: 185 SLGGTIWHIQHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEVIEQLRKPTALVCS 244
Query: 183 AYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---- 238
A + + D + + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 245 TRTAEGGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYLLEHAWRSEASTEG 304
Query: 239 ---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL-------------- 281
+Y STI KS EWM +SI + FE D F
Sbjct: 305 GGLSTAKLYLAGRSVHSTIKLAKSMFEWMDNSIVQEFEAGADQGFRRTNGAGGNADAKGK 364
Query: 282 ------LKHVTLLINKSE----LDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
K++ LL K++ L+ + D K++LA+ SLE GFS DI A+D +N
Sbjct: 365 DGGPFDFKYLRLLDRKAQVLKLLEPSTDELRGKVILATDTSLEWGFSKDIISAIANDSRN 424
Query: 330 LVLFTERGQFG-----TLARML-----------------------QADPPPKAVKVTMSR 361
+V+ E+ +++R L Q + +++ S+
Sbjct: 425 MVILPEKPAESSRDNPSISRQLWRWWKERRDGVADEQSSGAGSAEQVFAGGRELQIRESK 484
Query: 362 RVPLVGEELIAYEE---EQTRLKK------EEALKAS-----------------LVKEEE 395
+VPL EL Y++ Q +L AL+AS E++
Sbjct: 485 KVPLADSELSIYQQWLATQRQLNATVQGGGASALEASADVADDVSSESSSDSDDSENEQQ 544
Query: 396 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 455
KA S +V+ + + +P G Y D + G MFP
Sbjct: 545 GKALNASTTQASRKKVVLQDEDLGVMILLKKP--GVY-DFPVKG----KKGRERMFPLAV 597
Query: 456 NNSEWDDFGEVINPDDYIIKDEDM-----DQAAMHIGGDDG-----KLDEG---SASLIL 502
D+FGE+I P+DY+ +E D + G DG K D+ +A+ L
Sbjct: 598 RRKRNDEFGELIRPEDYLRAEEREENERPDTQQLQSDGQDGFGQKRKWDDAGSRNAANGL 657
Query: 503 DAK------------------------------------PSKVVSNELTVQVKCLLIFID 526
+ + P+K+V TV V L ID
Sbjct: 658 NRRGQRGQADDADAAQAASGPAPDELDLVEDVEEEVVTGPAKLVHTSTTVSVNLRLALID 717
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTS 586
+ G D RS+ ++ + P KL+LV GSA+ TE + C ++ V+TP + +D +
Sbjct: 718 FSGLHDRRSLAMLIPLIQPRKLILVAGSADETEAVADDCRRNAI-EVFTPPVGAVVDASV 776
Query: 587 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT----ENGM--------------- 627
D A+ V+L++ L+ + ++++ I V A++ T +NG+
Sbjct: 777 DTNAWVVKLADPLVKRLKWQQVRGLGIVTVTAQLTATPAAQKNGIPLLIADDDGANKRQK 836
Query: 628 -----------------------LSLLPISTPAPPHKSVL---VGDLKMADLKPFLSSKG 661
L +LP++ + + VG+L++ADL+ + + G
Sbjct: 837 IKATGVDDQEPTAEDEDVGVMPTLDVLPVAMVSASRSAAQVLHVGELRLADLRRTMQNLG 896
Query: 662 IQVEFAG-GALRCGEYVTIRKV 682
+F G G L V +RK
Sbjct: 897 HSADFRGEGTLLIDGTVVVRKT 918
>gi|300121266|emb|CBK21646.2| unnamed protein product [Blastocystis hominis]
Length = 400
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 188/362 (51%), Gaps = 32/362 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M ++ + TPL G N+ P+ ++ ID + ++DCGW++ + +L P+ ++AVL+
Sbjct: 1 MPSTFKFTPLYGAENDGPVCSILQIDSIHIMLDCGWDERLETDMLSPIKDYIPLLNAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SH D LHLGALPY + + P+F + + L M D +R
Sbjct: 61 SHADFLHLGALPYVYSRWDCNVPIFINKDAFLLARFCMEDVMENRLLGEEDCIFGKDDIS 120
Query: 106 ---RSVTRLTYSQNYH-LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ Y+Q +S G+ + + AGH++GG++W I + + ++Y+++ N +
Sbjct: 121 KVCECFRTVVYNQQERIMSETGDVVYINAREAGHMIGGSIWDIITETDHLVYSMNINPQP 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNAL------HNQPPRQQREMFQDAISKTLR-AGGNVL 214
+ HL G + ++LITDA + ++Q + + F I+ TLR G+VL
Sbjct: 181 DNHLRGASSDVSGNISLLITDACEHMTEKSRYNSQLEKAKFGHFSYLITDTLRDKHGSVL 240
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PVDS GR LE++L+LE W E +L NY + FL+ SS T++Y++ + + I +
Sbjct: 241 IPVDSVGRCLEVILLLERVWKESNLENYKVLFLSSRSSQTVNYIQGIASNLNERILQQSA 300
Query: 274 TSRDNAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
+ AF L+ VT + S ++N K+V+A++ LE F+ + +W + +NL+
Sbjct: 301 EAERKAFDLQFVTCV---SIVENVLESQASKVVIATLPGLETSFAQTLLKKWCTRSENLL 357
Query: 332 LF 333
LF
Sbjct: 358 LF 359
>gi|401885166|gb|EJT49292.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 2479]
Length = 958
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 194/739 (26%), Positives = 320/739 (43%), Gaps = 121/739 (16%)
Query: 5 VQVTPLSG----VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
+ +TPLS V + P+SY + +D L+D G D + S Q + I
Sbjct: 2 ITLTPLSSSATSVSPDEPVSYFLELDDARILLDMGQRD-YRASAQQTSWEYEEKI----- 55
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
T +LG YA GL PV++T+P +G + + S R+
Sbjct: 56 -RDPTQYLGLYAYARAHWGLKCPVYATQPTVEMGRVVSLAEAESWRAECPVSDEEGEFKG 114
Query: 108 ---------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDV 151
+ + Y+Q HL G+ +++ P +GH+LGGT++KI + V
Sbjct: 115 PFVPTTEEIHEAFDHIKAIRYNQPLHLGGELSHLLLTPFPSGHVLGGTLFKIRSPTSGTV 174
Query: 152 IYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQD 201
+YAV N E+HL+G V E RP +LI + + R++RE D
Sbjct: 175 LYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGRSNAVNAKRRERETAILD 234
Query: 202 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----------EHSLNYPIYFLTYVSS 251
++ TL G +VL+P D++ R+LELL++L+ +W+ N+P+ ++ +
Sbjct: 235 LVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFKRTAAPGGPAAQWNHPLCLVSRTAQ 294
Query: 252 STIDYVKSFLEWMG--------DSITKSFETSRDN-------------AFLLKHVTLLIN 290
+ + +S LEWMG D + + + + A HV
Sbjct: 295 DMVSFARSLLEWMGGVVRESGADDVVAALDRRKGRKRKALVNLGSEYGALDFSHVQFFAT 354
Query: 291 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 346
EL + P + PKLVLA ++ G S +F AS N+VL T G+ TLAR L
Sbjct: 355 PEELLEKYPANRPKLVLAIPPTMSHGPSRTLFASMASVPGNVVLLTGHGEDRTLARELYA 414
Query: 347 ------------------QADPPPKAVKVTMSRRVPLVGEELIAYE-EEQTRLKKEEALK 387
A P +++ + + PL GEEL AYE E+ + ++E A +
Sbjct: 415 RWEAHQDEGAHYGHGKIGHATPMEGRLELELDAKEPLSGEELEAYETAEREKREREAAHQ 474
Query: 388 ASLVK-----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP 442
A+L + E + S ++ +GD + ANA A E DI + G
Sbjct: 475 AALERNNRMLEADDLESDSDSDSEAGDLAGLHQEGANAFAGDGEDARTMSFDIFVKGQSV 534
Query: 443 PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---GGDDGKLDEGSAS 499
+ MFP+ + D FGE ++ +I K ++++ K E +
Sbjct: 535 LRGTRFRMFPYIAKGRKVDSFGEGLDVGQWIRKGREIEEDGETEEVRAAKRRKAAEEEKA 594
Query: 500 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
PSK VS+ + V + + +ID G DG++I+TI++ +AP KLV+V + A+E
Sbjct: 595 KQAPEPPSKFVSSIVGVDLHASIAYIDMAGEHDGQAIRTIVTDLAPRKLVVVKSTTPASE 654
Query: 560 HLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSE---KLMSNVLFKKLGDYEIA 614
LK + + + + P + I + + +Y +QL + +L++ L + G YEIA
Sbjct: 655 ALKAYFAQTPKITHDAFYPGPYQPIQIGEHVQSYSLQLGDSMGRLLAGRLSRFEG-YEIA 713
Query: 615 WVDAEVGKTENGMLSLLPI 633
V GK S +PI
Sbjct: 714 MVQ---GKLAYATGSTVPI 729
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 632 PISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRC---------GEYVTIRK 681
P S P S+ +GDL++ LK L + GI +FAG G L C G V +RK
Sbjct: 867 PPSGPLTLPSSLFIGDLRLLALKNRLGTLGIPAQFAGEGVLVCGPGVEPGAKGSIVAVRK 926
Query: 682 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 718
+ ++G ++V+EGP+ Y+ +R LY +
Sbjct: 927 L----EEG------RVVLEGPVSGTYFAVRRELYGSY 953
>gi|452004821|gb|EMD97277.1| hypothetical protein COCHEDRAFT_1163978 [Cochliobolus
heterostrophus C5]
Length = 948
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 181/408 (44%), Gaps = 94/408 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F L+ + + T+ +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR---------RSVTRLTYSQNYHLSGKGE----------- 124
++T PV LG + D Y S ++ YS + L G
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTAQ 145
Query: 125 ------------------------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 155 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALH---NQPPRQQREMF 199
VD+N+ +E L+G VLE RP LI + N +PP ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTSGSEVLEQLRRPTALICSSRNTDMVKVAKPPSKRDEAL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPIYFLTYVSS 251
+ I T+ GG VL+P DS+ RVLEL +LE+ W + N IY + +
Sbjct: 266 IEMIRDTVANGGTVLIPSDSSARVLELAYLLEETWHRETAEGGNGPLANTKIYLASRTAG 325
Query: 252 STIDYVKSFLEWMGDSITKSFETS-----RDNA-----------FLLKHVTLLINKSELD 295
+T+ YV+S LEWM + I K FE S R N F +HVTLL K+ +
Sbjct: 326 ATMRYVRSMLEWMEEGIVKEFEASAADQDRRNKGGKDEDRAKIPFDFRHVTLLERKTRVA 385
Query: 296 N--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFG 340
A DGP+++LAS +LE GFS D ASD KNLV+ TER G+ G
Sbjct: 386 RMLAADGPRVILASDTTLEWGFSKDALRSLASDEKNLVILTERSGELG 433
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 110/365 (30%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS---------ASL 500
MFPF DDFG++I P+D+ +E+ + A + G+D K + A+
Sbjct: 586 MFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTAGEALRGEDAKKENAVGQKRRWDDLANN 645
Query: 501 ILDAK----------------------------------PSKVVSNELTVQVKCLLIFID 526
+ + K PSKV+ +Q++C + F+D
Sbjct: 646 VDNVKATAQQKRRKEREGREGEDEESDSEPEEDPDKVEGPSKVIIESEALQIQCRIAFVD 705
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--------HCLKHVCPHVYTPQI 578
+ G D R+I+ ++ + P KL+ V G T L + + V+TP +
Sbjct: 706 FSGLHDRRTIQQLIPLIKPRKLIFVGGEQGETLELAEISRIALNANTDSASAISVFTPTV 765
Query: 579 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVDAEV--------- 620
ID + D A+ V+LS ++ N+ ++ + G A ++ EV
Sbjct: 766 GVVIDASVDTNAWSVKLSRNMVRNLRWQNVRGMGVVAITGRLAAASLEPEVKEEADTPAK 825
Query: 621 ---------------GKTENGMLSLLPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 661
+ +L ++P + A +SV VGDL++ADL+ +++ G
Sbjct: 826 KKARVDAPAIPVSSDNNNDTPVLDVVPANM-ATAVRSVAQPFHVGDLRLADLRKLMNANG 884
Query: 662 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG-------PLCED---YYKI 710
+Q EF G G L V +RK + T QI I+G P D + ++
Sbjct: 885 MQAEFRGEGILVVNGTVAVRK----------TATGQIEIDGGAYGNFDPRTNDAATFSRV 934
Query: 711 RAYLY 715
R +Y
Sbjct: 935 RRQIY 939
>gi|451853389|gb|EMD66683.1| hypothetical protein COCSADRAFT_35187 [Cochliobolus sativus ND90Pr]
Length = 948
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 183/414 (44%), Gaps = 94/414 (22%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F L+ + + T+ +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR---------RSVTRLTYSQNYHLSGKGE----------- 124
++T PV LG + D Y S ++ YS + L G
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTAQ 145
Query: 125 ------------------------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 155 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALH---NQPPRQQREMF 199
VD+N+ +E L+G VLE RP LI + N +PP ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRRPTALICSSRNTDMVKVAKPPSKRDEAL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPIYFLTYVSS 251
+ I T+ GG VL+P DS+ RVLEL +LE+ W + N IY + +
Sbjct: 266 IEMIRDTVANGGTVLIPSDSSARVLELAYLLEETWHRETAEGGNSPLTNAKIYLASRTAG 325
Query: 252 STIDYVKSFLEWMGDSITKSFETS-----RDNA-----------FLLKHVTLLINKSELD 295
+T+ YV+S LEWM + I K FE S R N F +H+TLL K+ +
Sbjct: 326 ATMRYVRSMLEWMEEGIVKEFEASAADQDRRNKGGKDEDRAKIPFDFRHITLLERKTRVA 385
Query: 296 N--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGTLARML 346
A DGP+++LAS +LE GFS D ASD KNLV+ TER G+ G + L
Sbjct: 386 RMLAADGPRVILASDTTLEWGFSKDALRSLASDEKNLVILTERSGELGAQRKGL 439
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 110/365 (30%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS---------ASL 500
MFPF DDFG++I P+D+ +E+ + A + G+D K + A+
Sbjct: 586 MFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTAGEALRGEDAKKENAVGQKRRWDDLANN 645
Query: 501 ILDAK----------------------------------PSKVVSNELTVQVKCLLIFID 526
+ + K PSKV+ +Q++C + F+D
Sbjct: 646 VDNVKATAQQKRRKEREGREGEDEESDSELEEDPDKVEGPSKVIIESEALQIQCRIAFVD 705
Query: 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--------HCLKHVCPHVYTPQI 578
+ G D R+I+ ++ + P KL+ V G T L + + V+TP +
Sbjct: 706 FSGLHDRRTIQQLIPLIKPRKLIFVGGEQGETLELAEISRIALNANTDSASAISVFTPTV 765
Query: 579 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVDAEV--------- 620
ID + D A+ V+LS ++ N+ ++ + G A ++ EV
Sbjct: 766 GMVIDASVDTNAWSVKLSRNMVRNLRWQNVRGMGVVAITGRLAAASLEPEVKEEVDTPAK 825
Query: 621 ---------------GKTENGMLSLLPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 661
+ +L ++P + A +SV VGDL++ADL+ +++ G
Sbjct: 826 KKARVDAPAIPVSSDNNNDTPVLDVVPANM-ATAVRSVAQPFHVGDLRLADLRKLMNANG 884
Query: 662 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG-------PLCED---YYKI 710
+Q EF G G L V +RK + T QI I+G P D + ++
Sbjct: 885 MQAEFRGEGILVVNGTVAVRK----------TATGQIEIDGGAYGNFDPRTNDAATFSRV 934
Query: 711 RAYLY 715
R +Y
Sbjct: 935 RRQIY 939
>gi|50549403|ref|XP_502172.1| YALI0C23232p [Yarrowia lipolytica]
gi|49648039|emb|CAG82492.1| YALI0C23232p [Yarrowia lipolytica CLIB122]
Length = 799
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 188/782 (24%), Positives = 331/782 (42%), Gaps = 144/782 (18%)
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQL-GLSA-PVFSTEPVYRLGLLTMYDQYLSR------ 105
T++ VL +H + HLGA A K L+A P + T PV +G + + Y S+
Sbjct: 41 TLNLVLFTHANAAHLGAYALACKLYPALAAVPAYGTLPVINMGRIATLEAYRSQGLLSSE 100
Query: 106 -----------RSVTRLTYSQNYHLSGKGEG-------------------------IVVA 129
++T + Y Q + + +G + +
Sbjct: 101 HITATEIEIIFDNITSIKYLQPIGIGVRSKGEVATTATEDGNSTELTTTQVTTHETLTIT 160
Query: 130 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLIT 181
+GH LGGT+W++ ++V+YAVD+N K+ HL+G ++ + RP V++
Sbjct: 161 AFNSGHSLGGTIWRLQHQQDNVVYAVDWNHAKDSHLSGAAFLQKGGQIVSALHRPTVMVC 220
Query: 182 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH---S 238
+ L +++ + +I K L+ GG+VLLP RVLE++ +L+D W +
Sbjct: 221 GSQTGLR---LKRRDILLWSSIQKALKRGGSVLLPTSVGSRVLEVIHMLDDLWTNNQNSQ 277
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD--- 295
+ LT++ + ++Y S LEWM SI +E ++ F ++ ++ + + D
Sbjct: 278 QGVTLVLLTHLGARLLEYASSMLEWMSPSIIAEWEKKNESPFQTRNFKIVHSMDQFDKVV 337
Query: 296 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAV 355
+G +V++ LE+GFS +F ASD +N VLFTER + +LA LQ D K
Sbjct: 338 KGGNGQFVVVSVGEDLESGFSRLLFNRLASDERNSVLFTERSEGNSLATELQ-DKWEKTE 396
Query: 356 K------------VTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLGP 402
+ + M PL E+ Y +++ K + +KA ++ +E
Sbjct: 397 RDGNSAKMDFQTTLKMPTYTPLSEAEMKEYRTTVESQQKDLQMVKAMELRNKELLEE--- 453
Query: 403 DNNLSGDPMVIDANNANASADVVEPHG-----GRYRDILIDGFVPPSTSVAPMFPFYENN 457
+ +++ DV G G ++D V + FPFY+
Sbjct: 454 -------AEAEEMMDSSDDEDVSRMQGSGQEYGFLHGTVLDVDVRDAVGSLRNFPFYQKR 506
Query: 458 SEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS------------------ 499
++G I+P D+ +E + A ++ DE
Sbjct: 507 QRVSEYGIPIHPSDFARVEERPEVAWKERDRNEFDSDEPRKRQRRRTKAAAEEQEERVVE 566
Query: 500 ---------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 550
LD +P +V ++ + + C + F+D GR D RS+ I+ + P KL+L
Sbjct: 567 DADDAPETITSLDNQPIRVSYEDVDLNIICHVDFVDLSGRIDERSLGMIMHSIHPKKLLL 626
Query: 551 VHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-G 609
+ S A + L + + V+ + T S A +QL+ +L + +++L G
Sbjct: 627 LDDSRRA-DDLCSYLKREDDTDVHVLRGLTTAGTHS--FAVDIQLTPELSRLLNWQQLSG 683
Query: 610 DYEIAWVDAEVGKTEN-------GMLSLLPISTP-----APPHKSVLVGDLKMADLKPFL 657
+A V +V K E+ L+L PI AP + + VGD+++A+LK L
Sbjct: 684 GLSLAHVVGKVAKNEDKSEDTPLAALALQPIVDAADLAVAPRIEPLRVGDIRLAELKQAL 743
Query: 658 SSKGIQVEF-AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
G + F AGG L V+IRKV + +V++G + D+Y I+ + +
Sbjct: 744 GKLGFRAVFQAGGVLVVDGKVSIRKVDES----------NLVVDGGIGSDFYAIKEVVRA 793
Query: 717 QF 718
Q
Sbjct: 794 QL 795
>gi|393215649|gb|EJD01140.1| cleavage and polyadenylation specificity factor subunit
[Fomitiporia mediterranea MF3/22]
Length = 922
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 219/489 (44%), Gaps = 121/489 (24%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCG---W---------NDHFDP------S 43
+ TPLSG + PLSYL+ +D L+DCG W D D S
Sbjct: 2 ITFTPLSGGARLSKTIPLSYLLQVDDVRILLDCGSPGWCPEHAIAGSEDSSDSQSFSWES 61
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL 103
+ L + A T+D VL+SH D H G YA GL AP ++T PV L ++
Sbjct: 62 YCKALKECAPTVDLVLISHGDLQHAGLYAYAYAHWGLRAPTYTTLPVQATARLAAVEEAE 121
Query: 104 SRRS-------------------------------------------VTRLTYSQNYHLS 120
S RS + L YSQ HL
Sbjct: 122 SIRSEEDVDNRNETSNDAEANDRMDVDDVLRRKFVPSPDDVREAYDSIHTLRYSQPAHLQ 181
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL--------- 170
GK +G+ + AGH LGGT+WKI + ++YAVD N +E+HL+GTV+
Sbjct: 182 GKCQGLTITAFNAGHTLGGTIWKIRSPSAGTILYAVDLNHLRERHLDGTVILRGAGAGGV 241
Query: 171 -ESFVRPAVLITDAYNALHNQPPRQQREMFQ--DAISKTLRAGGNVLLPVDSAGRVLELL 227
E+ RP ++ITDA + ++N R++ Q D ++ TL + +VL+P DS+ R+LELL
Sbjct: 242 YEALARPDLMITDA-DRVNNISCRKKDRDAQLIDTVTSTLSSRHSVLMPCDSSTRLLELL 300
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK-----------SFETSR 276
++L+ +W +PI ++ + +V+S +EW+G +I+K + + R
Sbjct: 301 VLLDQHWTYSRFKFPICLVSRTGREMLTFVRSMMEWLGGTISKEDVGEDTGNNANNKRRR 360
Query: 277 DN----------AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 324
D+ A K++ N L + + PKL+LA SL G S IF E+A
Sbjct: 361 DDDNEEEALGALALRFKYLEFFPNPQALLHTYSSKDPKLILAVPVSLSHGSSRSIFSEFA 420
Query: 325 SDVKNLVLFTERGQFGTLARML--------QADPP------------PKAVKVTMSRRVP 364
S N+VL T G+ GTLAR L + D K +K+TM +VP
Sbjct: 421 SVADNVVLLTSPGEDGTLARTLFDMWNDEQREDDKWNKGKLGRNVMLDKTLKLTMKSKVP 480
Query: 365 LVGEELIAY 373
L G EL Y
Sbjct: 481 LQGVELEEY 489
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 145/303 (47%), Gaps = 41/303 (13%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE---DMDQAAMHIGGDDGKLDEGSASLILDAKP 506
MFP+ E D +GEV++ ++ K + + ++ K +E A P
Sbjct: 616 MFPYVERRRRVDSYGEVLDVGLWLRKGKLLEEEAESEESKEAKRKKEEEEEAKKAPAEPP 675
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC- 565
SK +S ++ VQ+ C L+F+D EG DGR++K I +HV P KL++VH S++ + L + C
Sbjct: 676 SKYISYDVDVQLACRLLFVDMEGLNDGRAVKKIAAHVNPRKLIIVHSSSDGAQSLIEACG 735
Query: 566 -LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTE 624
++ + +Y P I E + + +Y + LSE+L+++V D E+ ++ +
Sbjct: 736 AVRALTKEIYAPDIGEQVQIGQHTNSYSISLSEELLASVRMSNFEDNEVGFIQGCIASLA 795
Query: 625 NGMLSLL-PIST-----------------PA-----PPHK---SVLVGDLKMADLKPFLS 658
+ + +L P+S PA P K S ++GDLK+ LK LS
Sbjct: 796 SSTIPILEPVSNLTSRLEDVPMESEQLVKPARLGSRPATKLPRSTMIGDLKLTALKARLS 855
Query: 659 SKGIQVEFAG-GALRC-----GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
G+ EFAG G L C E V+ + +K G ++ +EG + E YY +R
Sbjct: 856 KMGVHTEFAGEGVLLCRNSSSDEDVSTESIVAVRKKADG----KVELEGTVTEVYYTVRR 911
Query: 713 YLY 715
+Y
Sbjct: 912 AIY 914
>gi|358385845|gb|EHK23441.1| hypothetical protein TRIVIDRAFT_37526 [Trichoderma virens Gv29-8]
Length = 957
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 224/922 (24%), Positives = 355/922 (38%), Gaps = 254/922 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDESFSSDKLEELEKQVPTLSLILLTHATVS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS--------RRS--------- 107
HL A + K + L PV++T PV LG D Y S R+S
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETAYAY 125
Query: 108 --------------------------VTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 136
+ L YSQ + S G+ + + +GH
Sbjct: 126 SQTVTTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-----EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
A N R +R EM + +S+ GG VL+PVDS+ RVLE+ +LE W
Sbjct: 246 GADKNAQAGGRAKRDEHLIEMIKTCVSR----GGTVLIPVDSSARVLEISYLLEYAWRTD 301
Query: 238 SLNY-------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRD 277
+ N +Y SST+ Y +S LEWM ++I + FE ++
Sbjct: 302 AANKDGVLKYSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKVNGGNEKKE 361
Query: 278 NA-FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDI--------- 319
A F K++ LL K+++ +N +++LAS S++ GFS D+
Sbjct: 362 GAPFDFKYLRLLERKAQITKLLSQNIENGETQGRVILASDVSMDWGFSKDLVKGLAKDSR 421
Query: 320 ----------------------FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 357
EW + ++ V TE+ G M+ + + ++V
Sbjct: 422 NLVILTERPNLAKDDAPSISRTLWEWWRERRDGV-STEQASSGDSLEMVYSGG--RELEV 478
Query: 358 TMSRRVPLVGEELIAYEE---EQTRLKKEE------ALKAS----LVKEEESKASLGPDN 404
+RR PL G++L Y++ Q +L+ + AL+AS ES + +
Sbjct: 479 REARREPLDGDDLAIYQQWLATQRQLQATQQAGGAGALEASADVVDDASSESSSDSEDEG 538
Query: 405 NLSGDPMVIDANNANAS-ADVVEPHGGRYRDILI------DGFVPPSTSVAPMFPFYENN 457
G + + A A +VV +ILI D FP
Sbjct: 539 EQQGKALNVSATMGQAGRKNVVLKDEDLGINILIKKKTVYDFDTRGKRGRERSFPMAIRR 598
Query: 458 SEWDDFGEVINPDDYIIKDEDMDQA--AMHIGGDDGKLDE-------------------- 495
DDFGE+I P+DY+ +E D+A + + +D KL +
Sbjct: 599 KRNDDFGELIRPEDYLRAEEKEDEAVDSAQVAAEDDKLGKKRKWDDVAKQAAGANKRPNM 658
Query: 496 ----------------GSASLILDA----------KPSKVVSNELTVQVKCLLIFIDYEG 529
G+A LD+ P K++ TV V + ID+ G
Sbjct: 659 NRALAADDADAMDLGDGAAVDELDSVEDTEPEEPTGPCKLMYTTETVAVNLRIAMIDFSG 718
Query: 530 RADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTPQIEETID 583
D RS+ ++ + P KL+LV G+ E T L C + V+TP++ +D
Sbjct: 719 LHDKRSLNMLIPLIQPRKLILVGGTREETTALAADCRAALASDGDRSVDVFTPEVGTWVD 778
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---------------------GK 622
+ D A+ V+L++ L+ + ++ + I + ++ K
Sbjct: 779 ASMDTNAWVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAQEADGQAHDDVANKRQK 838
Query: 623 TENG-----------------MLSLLP---ISTPAPPHKSVLVGDLKMADLKPFLSSKGI 662
TE L +LP IS +S+ VGDL++ADL+ + G
Sbjct: 839 TEPSTSTAVALTNAADTATMPTLDVLPVNLISAARSAAQSLHVGDLRLADLRRAMQGAGH 898
Query: 663 QVEFAG-GALRCGEYVTIRKVG 683
EF G G L V +RK
Sbjct: 899 SAEFRGEGTLVVDGSVAVRKTA 920
>gi|345563127|gb|EGX46131.1| hypothetical protein AOL_s00110g295 [Arthrobotrys oligospora ATCC
24927]
Length = 982
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 183/396 (46%), Gaps = 80/396 (20%)
Query: 26 DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--P 83
+G L+DCGW++ F+ LQ + K A TI +LL+HP H+G+ + + + P
Sbjct: 25 NGIKILVDCGWSEPFNVDDLQQIEKHAPTISLILLTHPTLSHIGSYAHCCAHIPHFSRIP 84
Query: 84 VFSTEPVYRLGLLTMYDQYLSR-------------------------------RSVTRLT 112
V+ T PV LG + D YLS S + L
Sbjct: 85 VYCTYPVANLGRSLLQDAYLSTPLITSTYPPTSDLSPLVLRNPPSSDDIDRYFDSFSSLK 144
Query: 113 YSQNYHL-SGKGEGIVVAPHVAGHLLGGTVWKI--TKDGEDVIYAVDYNRRKEKHLNGT- 168
YSQ + S G+ + + AGH LGGT+W+I + E+++YAV +N ++ HL+
Sbjct: 145 YSQPFTFPSPPLAGLTITAYRAGHTLGGTIWRIQHSHSSENILYAVSWNHLRDAHLSSAS 204
Query: 169 -------VLESFVRPAVLITDAYNALHNQ--PPRQQR-EMFQDAISKTLRAGGNVLLPVD 218
V E F+ P LI YN L Q PR++R E+ AI K AGG VL+P D
Sbjct: 205 FLPGPTGVSEEFLNPTALICSPYNCLPGQVSTPRKKRDELLLSAIRKAAFAGGTVLIPTD 264
Query: 219 SAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
S+ R+LEL +LE + S N+ I + T YV++ LEWM +S+ K FE
Sbjct: 265 SSARILELAYLLEHDFRSKSSNWGSSGATISLAVRTAGRTFRYVRALLEWMDESMVKEFE 324
Query: 274 TSRDN--------------------------AFLLKHVTLLINKSELDN--APDGPKLVL 305
+ N F +H+ L+ +K +L + G K+V+
Sbjct: 325 SVTHNNNPSSRRKPKSSNTGAGDKEDDKLYGPFDFRHLKLVEHKHQLTKILSRKGGKVVI 384
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
S SLE GFS ++ A D +NL++ TERG GT
Sbjct: 385 TSDKSLEWGFSTEVVKSIADDERNLIVLTERGSEGT 420
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 49/225 (21%)
Query: 508 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 565
K+V N TV +K L+FIDY G +DGRS++ +L + P K+VL+ G+ E TE L +
Sbjct: 715 KLVINTTTVMLKNNLVFIDYSGLSDGRSLRMLLPQLKPKKVVLIGGTIEETEVLGKEVEG 774
Query: 566 ----------------LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK--- 606
+ V+ P+I E ++V + + ++LS+ L+ + ++
Sbjct: 775 MMEKERRKLRVDNDDGEEEREREVFMPKIGEAVNVGGETEVWSLKLSDGLVKMLKWQSVG 834
Query: 607 -------------------------KLGDYEIAWVDAEVGKTENGMLSLLPIS--TPAPP 639
K D + + E K +L +LP + TP
Sbjct: 835 GLGVVHVVGRVTVDTSTDLIKAENIKDEDTAMKTEEEEPDKKRQLVLDILPTTTNTPVKS 894
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
K + VGD+K+ +L+ L G E G G L C V++ K G
Sbjct: 895 AKPIHVGDIKLPELRRVLLDAGHTAELTGEGRLLCDGVVSVVKEG 939
>gi|358058074|dbj|GAA96053.1| hypothetical protein E5Q_02714 [Mixia osmundae IAM 14324]
Length = 896
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 179/676 (26%), Positives = 302/676 (44%), Gaps = 124/676 (18%)
Query: 108 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLN 166
+ + +S HL G+ + + +G LGGT++ + + ++YA +N KEKHL+
Sbjct: 148 IRTIRWSSPLHLEGRNAPLTLLAQPSGTHLGGTLFFVRSPTMPPILYAPVFNHIKEKHLD 207
Query: 167 GTVLESFVRPA-------VLITDAYNAL-HNQPPRQQREMFQDAISKTLRAGGNVLLPVD 218
S V LIT A Q + I+ TL+AG +VL+PVD
Sbjct: 208 SAA--SIVLGGAETKGLGTLITSVEKAQSKGQKTVARNSAMLQTITSTLQAGRSVLMPVD 265
Query: 219 SAGRVLELLLILEDYWA-EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+AGR+ ELL++L+ +W H ++P+ ++ +++ E+ G ++ K +
Sbjct: 266 AAGRIAELLVLLDQHWTFSHLGDFPLCLVSPTGPPLQMTLRNLHEFFGSNLGK------E 319
Query: 278 NAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
L ++ + + L P PK+VLA+ L G S +F E A+ NL+L T
Sbjct: 320 GIGRLANLKIFPSLDSLYAVIPPHVPKVVLAAPLPLSYGSSRKVFTEMAAQAGNLLLLTS 379
Query: 336 RGQFGTLARML-----QADPPPK---------------AVKVTMSRRVPLVGEELIAYEE 375
G G+L+R L +A P + AV + M +V L GEEL + +
Sbjct: 380 PGPAGSLSRSLFDKWNEAQTPAQRMGTGEIGQTITLNEAVSLPMRSKVILQGEELQEFLD 439
Query: 376 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV-----IDANNANA-------SAD 423
Q K+ A + ++++ + A D + S D ++A NA + D
Sbjct: 440 NQRAAKERHAKQKAMLERSQRMAEADADASDSEDGDSSDEDELEAPNAGEILPQQGDNVD 499
Query: 424 VVEPHGGRYR------------DILIDGFVPPST--------SVAP-------------- 449
V+ G R D +D PP T S+A
Sbjct: 500 VMAEPGARRDGEPGSMRGTGVWDEFLDEDAPPGTLDVYVRGRSIAAFLNGMPDTTSSRLR 559
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIK----DEDMDQAAMH---IGGDDGKLDEGSASLIL 502
M+PF E + D +GEVI+ ++ + +E+ ++ AM+ +G + DE
Sbjct: 560 MYPFTERRRKVDAYGEVIDVQGWLRRGRNDEEEQEENAMNNALLGKRKRQQDEQVEP--- 616
Query: 503 DAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK 562
P K + E V ++C L +D EGRADGR++K I+ +AP +L+LV+GS+ A + +
Sbjct: 617 ---PHKFLIEERQVMLRCQLFAVDLEGRADGRALKDIIPRLAPKRLILVNGSSAAAQDIA 673
Query: 563 QHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIA-------W 615
+ C V P + P + E + ++ ++ ++L ++L+S++ K+ +YE+A +
Sbjct: 674 RACHDFV-PVIEAPALGERVIAGIEIQSFAIRLGDELLSSLKLSKVEEYEMARISGILRF 732
Query: 616 VDAEVGKTENGMLSLLPIS----------------TPAPPHKSVLVGDLKMADLKPFLSS 659
VD E T L+ IS + AP S+ +GD+K+A L+ L S
Sbjct: 733 VDGEDIPTLEPSLAQAAISEDLLVDGADTEMTKKGSLAPLKPSMFIGDVKLAALRQRLLS 792
Query: 660 KGIQVEFAG-GALRCG 674
IQ FAG G L CG
Sbjct: 793 AKIQASFAGAGVLVCG 808
>gi|254567914|ref|XP_002491067.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030864|emb|CAY68787.1| hypothetical protein PAS_chr2-1_0816 [Komagataella pastoris GS115]
gi|328352406|emb|CCA38805.1| Cleavage and polyadenylation specificity factor subunit 2
[Komagataella pastoris CBS 7435]
Length = 854
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 206/848 (24%), Positives = 347/848 (40%), Gaps = 190/848 (22%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G N D W+ D L L K+ I+ +LLSHP +G Y +++ + + P+
Sbjct: 26 GINIFADPSWDGVAD---LSYLDKIIPQINVILLSHPTADFIGGFVYLLQKYPVLKTLPI 82
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGE 124
+ST P+ LG ++ + Y ++ S+ L YSQ+ L+G +
Sbjct: 83 YSTYPITNLGKVSTTELYRAKGLVGPLEGSIMEKSDIDECFDSIIPLKYSQSTPLTGIAQ 142
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLES-------FVRP 176
G+ V P+ AGH LGGT W I + E ++YA +N K+ LN T L+S V+P
Sbjct: 143 GLSVTPYNAGHSLGGTFWSINYNNEKIVYAPAWNHSKDSFLNSATFLQSNGHPIPQLVKP 202
Query: 177 AVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
A +IT D ++L ++ E F + T+ G V LP +GR LELL +++ +
Sbjct: 203 ASVITGSDLGSSLSYN---KKLEKFFTLVDATIAQNGTVFLPTSMSGRFLELLHLMDQHL 259
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+ P+ + + S ++ + LEWM I K +E + F V L++ +L
Sbjct: 260 GNQPI--PVLLVAFTGSKSLSLAGNMLEWMSPKIIKDWEERNETPFDPSRVQ-LVDVDDL 316
Query: 295 DNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER---GQFG---------- 340
P G K+V + A L G +H D KN ++FTER FG
Sbjct: 317 VQLP-GAKVVFTADADLTIGSTAHSTLASICIDEKNTIIFTERPTNSSFGASIYEIWEKL 375
Query: 341 TLARMLQAD---PPPKAVKVTMSRRV--PLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
TL R + + P P +T SR L G EL Y E K+E+ K + K
Sbjct: 376 TLERNGKLEDGFPVPFEKLLTFSRVTLKKLTGLELAQYTEIVNERKQEKRKKRQVEKMNT 435
Query: 396 S---KASLGPDNNLSG-DPMVIDA------------------------NNANASADVVEP 427
+ S+ + +S DP + A N + V
Sbjct: 436 TILADKSIDINKPISEFDPAAVKALEEDEDEDEEEDKEDIGVEETANDERGNTTTTAVAS 495
Query: 428 HGGRYRDIL---IDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM 484
+ +DI +D V + +FP++ E DD+G I+ D++ +D+ + + M
Sbjct: 496 TKKQEKDIYKIPLDFDVRNAKGRNRLFPYHSRIQETDDYGIKIDHSDFVKEDKSEEFSRM 555
Query: 485 ---------------HI--------------GGDDG---KLDEGSASL---------ILD 503
H+ GG++G K + S+ +++
Sbjct: 556 LDNKLKRNNRGKGNGHMGDDDDDDDDDDNDDGGENGPARKRRRNAKSVKETIYNFDPLVN 615
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
+ ++ SN +T +C L FID G D RS+ IL+ + P L+++ G E +
Sbjct: 616 PERLQLTSNMIT--ARCGLSFIDLSGTVDLRSVLLILNSLKPRNLLILPGRKSHREKTAE 673
Query: 564 HCLKHV------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWV 616
+ + VY +E I++ S +V+L++ L S + ++ + G Y +A+V
Sbjct: 674 SIVTSIKSKNSRNTQVYVTIPDEAIEMESAQATLEVKLADTLESELQWQNIAGGYSVAYV 733
Query: 617 DA----------EVGKTEN---------------------GMLSLLPISTPAPPHKSVLV 645
+ E TEN LS L + P + +
Sbjct: 734 NGVLETITDKKIESQTTENEDEGDKNKDESHYQELVLNPLDQLSTLKSTAP------LAI 787
Query: 646 GDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLC 704
GD++++DLK L ++ EF G G L + + I+K+ +I+I+G
Sbjct: 788 GDIRLSDLKTRLLGLQLKAEFKGKGTLVINDEIMIKKLNDG----------EIMIDGTCN 837
Query: 705 EDYYKIRA 712
E +Y IR+
Sbjct: 838 ELFYVIRS 845
>gi|336466927|gb|EGO55091.1| hypothetical protein NEUTE1DRAFT_130968 [Neurospora tetrasperma
FGSC 2508]
Length = 1051
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 165/635 (25%), Positives = 247/635 (38%), Gaps = 164/635 (25%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 55 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 114
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------LSRRSVTRLTYSQ 115
HL A + K PV++T PV LG D Y +S S+ ++Y+
Sbjct: 115 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 174
Query: 116 NYHLSGKGE-----------------------------------------GIVVAPHVAG 134
Y + E G+ + + +G
Sbjct: 175 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 234
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 180
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 235 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 294
Query: 181 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 239
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 295 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 354
Query: 240 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 278
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 355 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 414
Query: 279 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 415 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 474
Query: 330 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 361
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 475 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 534
Query: 362 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 404
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 535 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 591
Query: 405 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 452
G + I A AS V RD ILI D V + MFP
Sbjct: 592 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 646
Query: 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 487
D+FGE+I P+DY+ +E D G
Sbjct: 647 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 681
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 66/277 (23%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 760 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 819
Query: 566 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
K + V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 820 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTV 879
Query: 617 DA-----------EVG----------------KTENGMLSLLPISTPAPPHKSVL----- 644
EVG +T +L+ T P + L
Sbjct: 880 TGLLLPGGKFQPIEVGDGDGDAAKRQKLEDSSETPTTSTALVKAGTNTSPTTASLPTLDL 939
Query: 645 ------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
VG+L++ADL+ + S G + EF G G L + V +RK
Sbjct: 940 VPPTLASSLRSQAAQPLHVGELRLADLRRAMLSAGHKAEFRGEGTLLIDDVVVVRKSTAQ 999
Query: 686 GQK------GGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
G + G S T G L + K+ Y+
Sbjct: 1000 GGRIELESVGLPSDTMPGTTSGGLLDAAMKVGGTFYA 1036
>gi|67968624|dbj|BAE00671.1| unnamed protein product [Macaca fascicularis]
Length = 341
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 82/347 (23%)
Query: 440 FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLD 494
F + PMFP E +WD++GE+I P+D+++ +E+ + + D +D
Sbjct: 12 FFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMD 71
Query: 495 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
+ + + P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG
Sbjct: 72 QDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGP 126
Query: 555 AEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 610
EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D
Sbjct: 127 PEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKD 184
Query: 611 YEIAWVDA----EVGKTENGML-------------------------------------- 628
E+AW+D V K + G++
Sbjct: 185 AELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGD 244
Query: 629 ---------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 674
++P P PP H+SV + + +++D K L +GIQ EF GG L C
Sbjct: 245 DEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCN 304
Query: 675 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 305 NQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 341
>gi|281344001|gb|EFB19585.1| hypothetical protein PANDA_019064 [Ailuropoda melanoleuca]
Length = 237
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%), Gaps = 19/172 (11%)
Query: 10 LSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLG 69
L E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLLSHPD LHLG
Sbjct: 65 LDSTREESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLG 124
Query: 70 ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------------VTRL 111
ALPYA+ +LGL+ +++T PVY++G + MYD Y SR + + +L
Sbjct: 125 ALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQL 184
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKE 162
+SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++E
Sbjct: 185 KFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 236
>gi|164424681|ref|XP_958078.2| hypothetical protein NCU06869 [Neurospora crassa OR74A]
gi|157070616|gb|EAA28842.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 986
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 165/635 (25%), Positives = 247/635 (38%), Gaps = 164/635 (25%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------LSRRSVTRLTYSQ 115
HL A + K PV++T PV LG D Y +S S+ ++Y+
Sbjct: 66 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 125
Query: 116 NYHLSGKGE-----------------------------------------GIVVAPHVAG 134
Y + E G+ + + +G
Sbjct: 126 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 185
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 180
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 186 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 245
Query: 181 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 239
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 305
Query: 240 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 278
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 306 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 365
Query: 279 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 366 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 425
Query: 330 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 361
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 426 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 485
Query: 362 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 404
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 486 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 542
Query: 405 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 452
G + I A AS V RD ILI D V + MFP
Sbjct: 543 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 597
Query: 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 487
D+FGE+I P+DY+ +E D G
Sbjct: 598 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 632
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 711 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 770
Query: 566 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 608
K + V TP + T+D + D A+ ++L++ L+ + ++ +
Sbjct: 771 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNV 822
>gi|350288464|gb|EGZ69700.1| hypothetical protein NEUTE2DRAFT_152270 [Neurospora tetrasperma
FGSC 2509]
Length = 1070
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 165/635 (25%), Positives = 247/635 (38%), Gaps = 164/635 (25%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 74 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 133
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------LSRRSVTRLTYSQ 115
HL A + K PV++T PV LG D Y +S S+ ++Y+
Sbjct: 134 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 193
Query: 116 NYHLSGKGE-----------------------------------------GIVVAPHVAG 134
Y + E G+ + + +G
Sbjct: 194 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 253
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 180
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 254 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 313
Query: 181 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 239
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 314 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 373
Query: 240 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 278
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 374 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 433
Query: 279 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 434 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 493
Query: 330 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 361
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 494 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 553
Query: 362 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 404
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 554 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 610
Query: 405 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 452
G + I A AS V RD ILI D V + MFP
Sbjct: 611 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 665
Query: 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 487
D+FGE+I P+DY+ +E D G
Sbjct: 666 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 700
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 66/277 (23%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 779 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 838
Query: 566 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
K + V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 839 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTV 898
Query: 617 DA-----------EVG----------------KTENGMLSLLPISTPAPPHKSVL----- 644
EVG +T +L+ T P + L
Sbjct: 899 TGLLLPGGKFQPIEVGDGDGDAAKRQKLEDSSETPTTSTALVKAGTNTSPTTASLPTLDL 958
Query: 645 ------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
VG+L++ADL+ + S G + EF G G L + V +RK
Sbjct: 959 VPPTLASSLRSQAAQPLHVGELRLADLRRAMLSAGHKAEFRGEGTLLIDDVVVVRKSTAQ 1018
Query: 686 GQK------GGGSGTQQIVIEGPLCEDYYKIRAYLYS 716
G + G S T G L + K+ Y+
Sbjct: 1019 GGRIELESVGLPSDTMPGTTSGGLLDAAMKVGGTFYA 1055
>gi|349603401|gb|AEP99246.1| Cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 327
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 168/338 (49%), Gaps = 82/338 (24%)
Query: 449 PMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILD 503
PMFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 7 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV--- 63
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 64 --PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAE 121
Query: 564 HCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 122 CCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGV 179
Query: 619 ---EVGKTENGML----------------------------------------------- 628
V K + G++
Sbjct: 180 LDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEES 239
Query: 629 SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVG 683
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 240 EIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR-- 297
Query: 684 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 298 --------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 327
>gi|449299688|gb|EMC95701.1| hypothetical protein BAUCODRAFT_71003 [Baudoinia compniacensis UAMH
10762]
Length = 938
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 182/410 (44%), Gaps = 76/410 (18%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G E+ S L+ +DG L+D GW+ FD L + + ST+ VLL+H T
Sbjct: 5 TPLLGAQAESAASQSLLELDGGIKVLVDVGWDAAFDAQRLDAIERQTSTLSLVLLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K + L PV++T PV LG + D Y S
Sbjct: 65 EHLGAYAHCCKHIPLFSKVPVYATTPVINLGRTLLLDLYASSPLAASIIHTSSISSSSTT 124
Query: 106 -----------------------RSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLL 137
S+ L YSQ + S G+ + + AGH L
Sbjct: 125 SKADSSPNLLLQPPTPEEIATYFASINALKYSQPHQPVASSWSPALGGLTITAYGAGHTL 184
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNALHN 189
GGTVW I + E ++YA D+N+ +E L G ++E RP LI +
Sbjct: 185 GGTVWHIQQGLESIVYAADWNQGRENLLPGAALLSGGQEIIEPLQRPTALICSSKGVEKA 244
Query: 190 QP-PRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-----HSLNY- 241
Q R+ R+ M + T+ GG VL+P DS+ R+LEL +L + W E H+ Y
Sbjct: 245 QSQSRKDRDGMLLSLVRDTIAQGGKVLIPTDSSARMLELAFLLNEAWKENLDGPHAATYR 304
Query: 242 --PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET------SRDNAFLLKHVTLLINKSE 293
+Y + S++I Y++S LEW+ +S+ E N +HV L+ S
Sbjct: 305 SARVYMASKSGSASIRYLQSMLEWVEESVRAEAEAHLTKTKGSTNPLNWQHVKLVERNST 364
Query: 294 LDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
L+ A P + LAS ASLE GFS A+D KNLV+ TE+ G+
Sbjct: 365 LERAVQRSQPCVFLASDASLEWGFSRLALESLATDTKNLVILTEKSAPGS 414
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 130/324 (40%), Gaps = 92/324 (28%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIG-------GDDGKLDEGSAS- 499
MFPF + + D+FG++I P++Y+ +E +++ M G G K D+ S S
Sbjct: 569 MFPFVAHRTRNDEFGDLIKPEEYLRAEERDEVNGVDMRDGNKEDLAVGKKRKWDDASTSG 628
Query: 500 --------------------------------LILDAKPSKVVSNELTVQVKCLLIFIDY 527
++ P KVV ++ ++ + +D+
Sbjct: 629 PKATGESAGNKAQNGTPGDGSDEDEESDYEPEELMPEGPQKVVFTSRSLALRLRIAHVDF 688
Query: 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK-------HVCPHVYTPQIEE 580
G D R+++ I+ + P KL+L+ G T+ L C + ++TP E
Sbjct: 689 AGLHDLRALQMIIPLMRPRKLILISGERSETQTLASECRRLLTEGTESAGTDIFTPAEGE 748
Query: 581 TIDVTSDLCAYKVQLSEKLMSNVLF---KKLG--------DYEIAWVDA----------- 618
+D + D A+ ++LS +L+ + + K LG D E A DA
Sbjct: 749 VVDASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRLDAETAAEDAVKEEEENAKKK 808
Query: 619 --------EVGKTENGMLSL------LPIST--PAPPHKSVL----VGDLKMADLKPFLS 658
E+ K M + LP ST A H+ V VGD+++ADL+ L
Sbjct: 809 VKLESGNDELVKPARSMTATSVPILDLPNSTANAAQQHQRVTQPVHVGDMRLADLRQALR 868
Query: 659 SKGIQVEFAG-GALRCGEYVTIRK 681
G + +F G G L + V +RK
Sbjct: 869 GAGHEADFRGEGTLLVDQAVIVRK 892
>gi|409049761|gb|EKM59238.1| hypothetical protein PHACADRAFT_249539 [Phanerochaete carnosa
HHB-10118-sp]
Length = 951
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 179/362 (49%), Gaps = 60/362 (16%)
Query: 88 EPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TK 146
EP R + T+ + + + SV L YSQ HL GK +G+ + P AGH LGGT+WKI +
Sbjct: 164 EPRSRKYVATVQEVHDAFDSVNVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSP 223
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVL-----------ESFVRPAVLITDAYNALHNQPPRQQ 195
++YAVD N +E+HL+GTVL E+ VRP +LITDA A R+
Sbjct: 224 TAGTILYAVDMNHMRERHLDGTVLMRQGSSNTGIFETLVRPDLLITDAERANVTTARRKD 283
Query: 196 REM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTI 254
R+ D ++ TL + ++LLP D++ RVLELL++L+ +W+ L +PI L+ +
Sbjct: 284 RDAALLDCVTATLTSRNSLLLPCDASTRVLELLVLLDQHWSYSRLKFPICLLSRAGHEML 343
Query: 255 DYVKSFLEWMGDSITKS-----------------------FETSRDNAFLLK--HVTLLI 289
+V+S +EW+G +++K + AF L+ H+ +
Sbjct: 344 TFVRSMMEWLGGTVSKEDVGVEGQDGKHGKDRKRKRVDDDDDNEALGAFALRFPHLEIFP 403
Query: 290 NKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML- 346
N + + + PKL+LA +SL G S +F E+A N+VL T RG+ GTL R+L
Sbjct: 404 NPAAMMQRYSSKDPKLILAVPSSLSHGPSRALFSEFAEIPDNVVLLTGRGEEGTLGRILF 463
Query: 347 ------QADPPP-------------KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 387
Q D + + +S +VPL G EL + + K+ EA K
Sbjct: 464 ERWDNSQRDDTKWDRGKIGNNVMMDGTLHLKISSKVPLQGAELEEHLARERAAKEREAAK 523
Query: 388 AS 389
+
Sbjct: 524 KA 525
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 58/358 (16%)
Query: 414 DANNANASA----DVVEPHGGRYRDILIDGFVPPSTSVAP-----------MFPFYENNS 458
D ++A SA D V H Y DI + G V +TS MFP+ E
Sbjct: 600 DVDDAAWSAALDDDGVSRHMLSY-DIYLKGNVSKATSFFKSADGQPQQRFRMFPYVERKR 658
Query: 459 EWDDFGEVINPDDYIIKDEDMDQAAMHIGGDD--GKLDEGSASLILDAKPSKVVSNELTV 516
+ DD+GE+++ + ++ K + +++ A + +D + PSK V+ E+ V
Sbjct: 659 KIDDYGELVDVEMWMRKGKALEENAEN---EDLKEMKMKTEEEEKPQEPPSKFVTTEVEV 715
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVY 574
Q+ C L+F+D EG DGR++KTI+ V P K+++VH AT+HL + C ++ + +Y
Sbjct: 716 QLACRLLFVDLEGLNDGRAVKTIVPQVNPRKMIIVHAPQAATDHLIEACAGIRAMTKDIY 775
Query: 575 TPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPI- 633
P + E++ + ++ + LS++L++++ + D E+A+V G+ + S +PI
Sbjct: 776 APAVGESVQIGQHTNSFSISLSDELLASLKMSRFEDNEVAYV---TGRVSSLATSTIPIL 832
Query: 634 --------------------------STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFA 667
T A P +S ++G+LK+ LK L++ G+Q E
Sbjct: 833 ESVGSSSVGRAVTARHTARGRILGSRPTRALP-QSTMIGELKLTALKARLAAVGVQAELV 891
Query: 668 G-GALRCGEYVTIRKVGPAGQKG---GGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G G L CG A Q+ +G ++ +EG + + YYK+R +Y+ L+
Sbjct: 892 GEGVLICGAAARRGSAPDALQESVAVKKTGRGKLELEGAVSDVYYKVRREVYNLHALV 949
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWND-------------------HFDP 42
+ TPLSG + PL+YL+ +D L+DCG D H
Sbjct: 2 ITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGAPDWCPEDTSSAVKEEDLQETHHHWE 61
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
Q L + A TID VL+SH D H G PYA + GL+AP ++T PV
Sbjct: 62 QYCQTLKEYAPTIDLVLMSHGDLQHTGLYPYAYSRWGLTAPAYTTLPV 109
>gi|328854195|gb|EGG03329.1| hypothetical protein MELLADRAFT_90299 [Melampsora larici-populina
98AG31]
Length = 695
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/607 (24%), Positives = 265/607 (43%), Gaps = 114/607 (18%)
Query: 175 RPAVLITDAYNALHNQPPRQQREM-----------FQDAISKTLRAGGNVLLPVDSAGRV 223
RP V++ +L ++ R+ D I+ TLR+ +V +P D++ R+
Sbjct: 9 RPLVMMIGTERSLTKSIRKKDRDQVLFMTYITSFDLTDTIASTLRSSHSVFIPTDASARL 68
Query: 224 LELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMG-----DSITKSFETSRD 277
+EL+++L+ W L +P+ ++ I +++S EWM +S KS +RD
Sbjct: 69 IELIIMLDTLWTTSRLEPFPLCLVSQTGKDMITFLRSLTEWMSPLTPTESQLKS--RARD 126
Query: 278 N-----AFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
A L+++ I E A PK +LA ++ GFS +F NL
Sbjct: 127 EGPGGIALRLRNLKFFNSIEALESQTAAIQPKCILAVPLTMAYGFSRRMFTRHVGKPGNL 186
Query: 331 VLFTERGQFGTLARMLQAD---------------PPP----KAVKVTMSRRVPLVGEELI 371
V+ T G+ +L R L AD P P +V V + R+V L GEEL
Sbjct: 187 VVLTSMGEKESLTRWL-ADQVNEKSEAKYGSGTIPEPIDLNTSVSVELKRKVVLEGEELE 245
Query: 372 AYEEEQTRLKKEEAL-KASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG 430
Y E++ R K+ +A LV+ + + + S D +N+ + E
Sbjct: 246 QYLEDKQRAKERRTKHEAMLVRSRR----MIDEEDDSDRMSSSDDQESNSETETQEKPAS 301
Query: 431 RYRDILI---------DGFVPPSTSVA-----------PMFPFYENNSEWDDFGEVINPD 470
R + D FV + ++A MFPF + + D +GE++N D
Sbjct: 302 RKKPFTKLTQAKVATWDEFVDETETIAFDIYVKGSHRIKMFPFVDRRRKVDAYGEMLNVD 361
Query: 471 DYIIKDEDMDQAAM---HIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 527
+++ + + + ++ + ++G + ++ P K VS V+V C ++ ID
Sbjct: 362 EWLRRGDSVQESTIKNENVGKKRKWEEGEEGEDGVEEPPHKFVSETEEVKVVCKVLLIDL 421
Query: 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVT 585
EG+ADGR+++TI+ H+ P +VL++G++E + + + +++P+I E +
Sbjct: 422 EGKADGRALQTIIPHINPKTVVLINGTSETHQEFISNVSAIPSFTTQIFSPKIGECSVIG 481
Query: 586 SDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----------------EVGKTENGMLS 629
D ++ V+LS+ LMS++ K+ +E+ ++ +G + L+
Sbjct: 482 HDTKSFSVRLSDDLMSSIKLSKVEGFEVGYLTGILQVLDESSIPTLERLPIGLNNSTQLT 541
Query: 630 LLPISTPAPP------------HK---------SVLVGDLKMADLKPFLSSKGIQVEFAG 668
T P H+ ++ +G++K+ LK +L+S GIQ EF G
Sbjct: 542 RYNQRTSKPKDTENEESKLDISHRLDALPITSSTIFIGEIKLIGLKSYLNSIGIQAEFTG 601
Query: 669 -GALRCG 674
G L CG
Sbjct: 602 EGVLICG 608
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 31/366 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYR-----------LGLLTM 98
ST+D +L+SH H +LPY M++ + VF T P +YR +G+ +
Sbjct: 25 STVDVLLISHFHLDHAASLPYVMQKTNFNGRVFMTHPTKAIYRWLLRDFVRVTSIGVNSP 84
Query: 99 YDQYLSRRSVTRLTYS------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
D+ + + L S +YH + GI AGH+LG +++I G V+
Sbjct: 85 LDREENLYTNEDLVESFDKIETVDYHSTIDVNGIKFTAFHAGHVLGAAMFQIEIAGMRVL 144
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
+ DY+R K++HLN + +++ + ++P + + I T+ GG
Sbjct: 145 FTGDYSREKDRHLNSAEVPPLSSNILIVESTFGTATHEPRLNREKKLTQMIHHTVSHGGR 204
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
VL+PV + GR EL+LIL++YWA+H+ PIY+ + ++ + ++++ M D
Sbjct: 205 VLMPVFALGRAQELMLILDEYWAQHAEELGDGQVPIYYASNLARKCMSVFQTYVNMMNDD 264
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
I K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ W D
Sbjct: 265 IRKKFRDSQTNPFIFKNISYLKNLEEFQDL--GPSVMLASPGMLQSGLSRDLLERWCPDE 322
Query: 328 KNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKKE 383
KNLVL T GT+A+ ML+ D P +VT++RR + A+ + Q L+
Sbjct: 323 KNLVLITGYSIEGTMAKYLMLEPDTIPSVNNPEVTVARRCNIEEISFAAHVDFQENLEFI 382
Query: 384 EALKAS 389
+ + A+
Sbjct: 383 QKINAT 388
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 180/366 (49%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + VT +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCIKKVTAVTLHQSVMVDNELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +KS +DN G +V A+ L AG S +IF +WA +N+++ F
Sbjct: 298 NMFDFKHIKPF-DKSYIDNP--GAMVVFATPGMLHAGLSLNIFKKWAPYEQNMLIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL+ N V+VK + ++ + AD + I ++ + P ++LVHG A+ E
Sbjct: 363 ILNGAKKIEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEET 581
LK K Y P ET
Sbjct: 423 LKDKIEKEFKISCYMPANGET 443
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|452840080|gb|EME42018.1| hypothetical protein DOTSEDRAFT_133466 [Dothistroma septosporum
NZE10]
Length = 1101
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 185/407 (45%), Gaps = 79/407 (19%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++P S L+ +DG L+D GW++ FD L + + ST+ VLL+HP
Sbjct: 5 TPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEKLHAIEQHVSTLSIVLLTHPTL 64
Query: 66 LHLGALPYAMKQL-GLSA-PVFSTEPVYRLGLLTMYDQYLSR------------------ 105
H+GA + K + G S PV++T PV LG + D Y S
Sbjct: 65 DHIGAYAHCCKHIPGFSRIPVYATTPVVNLGRTLLADLYHSAPLTTSIIPTSAILSSPIA 124
Query: 106 -----------------------RSVTRLTYSQNYH----LSGKGEG-IVVAPHVAGHLL 137
++ L YSQ + SG G G +V+ + AGH
Sbjct: 125 ADPHTTPNLLYQHPTPDEIAAYFNAINPLKYSQPHQPIGVASGPGLGNLVITAYSAGHTP 184
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNALHN 189
GGT+W I E ++YA D+N+ +E L+G ++E RP L+ +
Sbjct: 185 GGTIWHIQHGLESIVYAADWNQGRENLLSGAAWLGTSSEIIEPLRRPTALVCSSKGVQKT 244
Query: 190 QP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-----HSLNY- 241
PR++R E+ I +T+ GG VL+P DS+ RVLEL IL W E H+ Y
Sbjct: 245 DTLPRKKRDELLVSLIRETVAQGGKVLIPTDSSARVLELAFILNHTWRENITGPHADTYR 304
Query: 242 --PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN--------- 290
I+ + S+ST+ + LEWM D+I + E + K + +++
Sbjct: 305 HARIFMASKSSTSTMRQLHGMLEWMDDAIQRHAEAAMGQGGDDKKIPSMLDWRFVKQIER 364
Query: 291 KSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
KS+LD P ++LAS ASLE G S A D +NLV+ TE
Sbjct: 365 KSQLDKVLQRQNPCIILASDASLEWGLSQHALKALAGDARNLVILTE 411
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 54/271 (19%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
DEG + +P KVV N+ + ++ + ID+ G + R ++ I+ V P KL+L+ G
Sbjct: 693 DEGDSD-----EPKKVVFNDQAISLQIRVGHIDFTGMHEKRDLQNIIPRVRPRKLILISG 747
Query: 554 SAEATEHLKQHCLKHV-------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 606
T L C + + V+TP + ET+D + D A+ ++LS +L+ + ++
Sbjct: 748 DVSETRELADWCRQSLDSGAGESASEVFTPIVGETVDASVDTNAWSLKLSRQLVKKLAWQ 807
Query: 607 KLGDYEIAWVDA--------EVGKTE-----------NG----------------MLSLL 631
+ I + EV TE NG ML L+
Sbjct: 808 NVKGLGIVTLTGSLMAERPQEVEDTEDENVKKKLKLINGEDQEDVTMKSNAPLIPMLDLV 867
Query: 632 PISTPAPPHKS---VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAG- 686
+ + V VGDL++A+ + L G EF G G L V +RK
Sbjct: 868 KTTAGTTQQRGAQPVHVGDLRIAEFRRMLMESGHVAEFRGQGTLLVDSTVLVRKDASGKI 927
Query: 687 --QKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
+ G G +Q + +Y ++ +Y
Sbjct: 928 EIEAGAGGLSQPTYRTREMEGTFYAVKKLIY 958
>gi|361125691|gb|EHK97723.1| putative Cleavage factor two protein 2 [Glarea lozoyensis 74030]
Length = 835
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 182/756 (24%), Positives = 299/756 (39%), Gaps = 196/756 (25%)
Query: 134 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLIT 181
GH LGGT+W+I E ++YAVD+N+ +E L+G V+E +P LI
Sbjct: 61 GHTLGGTIWQIQAGLESIVYAVDWNQSRENILSGAAWLGGAGGGGAEVIEQLRKPTALIC 120
Query: 182 DAYNALH---NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
+ +++ E+ D I + GG VL+P DS+ RVLEL +LE W E +
Sbjct: 121 SSKGGEKVAIAGGKKKRDELLLDNIKSCVSKGGIVLIPTDSSARVLELAYLLEHAWREDA 180
Query: 239 -------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-----TSRDN-------- 278
++ Y + +T+ Y +S LEWM +SI + FE +D+
Sbjct: 181 ESDDSTLMSARPYLASKNIQATMRYARSMLEWMDESIVREFEAVAGQNKQDDDPDAKLRG 240
Query: 279 ---AFLLKHVTLLINKSELD--------NAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
F KH+ LL KS++D + K++LAS SLE GFS ++F D
Sbjct: 241 IGGPFDFKHLRLLERKSQIDKIMQEVDNHGRSIGKVILASDTSLEWGFSKEVFRRICDDR 300
Query: 328 KNLVLFTER-GQ-------FGTLARML-----------------------QADPPPKAVK 356
+NLV+FTER GQ G +AR L Q + ++
Sbjct: 301 RNLVIFTERMGQPKMENPKLG-MARTLWSWWEDRSDGVATETAASGDVLEQVYGGGRQLE 359
Query: 357 VTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL--------------GP 402
+ + RV L G++L AY+ ++ + +A ES A +
Sbjct: 360 MRETTRVALEGDDLAAYQNWLATQRQLQTTQAGGATSLESSADMIDDAVSDSSDSDDDDE 419
Query: 403 DNNLSGDPMVIDANNANASADVVEPHGGRYRDILI----------DGFVPPSTSVAPMFP 452
+N G + I A A+ + G D+ I D V MFP
Sbjct: 420 ENEQQGKALNISATMGQANRKKI---GLTDEDLGINILLRKKGVYDYDVRGKKGREKMFP 476
Query: 453 FYENNSEWDDFGEVINPDDYIIKD--EDMDQA---------AMHIGGDDGKLDE--GSAS 499
D++GE++ P+D++++D ++ D+ G K DE G +
Sbjct: 477 LVVRRKRTDEYGELVRPEDFVMQDTKDNNDEGLSRQPNKFDTKDTLGKKRKWDETPGQRN 536
Query: 500 LILDAK--------------------------------PSKVVSNELTVQVKCLLIFIDY 527
+ D K PS+V T+ V L F+D+
Sbjct: 537 VSGDMKRQQNTKPLGDLIPGYDDEDDDVVEPEVEEITGPSRVEIKTETINVDLRLAFVDF 596
Query: 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK---------HVCPHVYTPQI 578
G D RS++ ++ + P KL+ V G + T L C K ++TP +
Sbjct: 597 GGVHDKRSLQMLIPLIQPRKLIFVSGMKDETLALAVDCRKILAAKSGNDETAIEIFTPMV 656
Query: 579 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVD---AEVGKTENG 626
+ +D + D A+ ++LS+ L+ + ++++ G E+ D E K
Sbjct: 657 GDWVDASVDTNAWALKLSDALVKRLRWQQVKGLGIVTLTGQLELTHADNVNIESDKKRQK 716
Query: 627 M---------------------LSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGI 662
+ L +LP + + + + VGDL++ADL+ + G
Sbjct: 717 LIKDETAESMDLVASPPAEIPTLDILPTAMASATRSIAQPLHVGDLRLADLRKLMLGSGH 776
Query: 663 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
EF G G L V ++K G + GSG +++
Sbjct: 777 TAEFRGEGTLLVDGTVIVKKTGTGRIEIEGSGIREL 812
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 178/368 (48%), Gaps = 30/368 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSK---VASTIDA 57
++VTPL + LVS+ G N + DCG + +D + P +SK + ID
Sbjct: 3 IKVTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAIDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
++++H H GALPY + G P++ T P + + + D + R+ T S
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 122
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + E + + + AGH+LG ++ + + V+Y DYN
Sbjct: 123 QMIKDCMKKVVGLNVHQTVQVDEELEIRAYYAGHVLGAAMFYVRVGDQSVVYTGDYNMTP 182
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL +E +RP VLIT++ A + ++ RE F + + GG VL+PV +
Sbjct: 183 DRHLGAAWIEK-LRPDVLITESTYATTIRDSKRWRERDFLKRVHSCVEKGGKVLIPVFAL 241
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L PIYF ++ +Y K F+ W + I ++F N F
Sbjct: 242 GRAQELCILLETYWERMNLTVPIYFSAGLTEKATNYYKLFIHWTNEKIKRTF--VHRNMF 299
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH++ + L + P GP ++ A+ L AG S ++F +WA + KNLV+ G
Sbjct: 300 DFKHISTF--ERGLADQP-GPMVLFATPGMLHAGTSLEVFKKWAPNEKNLVIIPGYCVVG 356
Query: 341 TLARMLQA 348
T+ L A
Sbjct: 357 TVGNKLAA 364
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 165/331 (49%), Gaps = 25/331 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------ 100
ST+DA+L++H H A+P+ + + + T P + + M D
Sbjct: 77 STVDAMLITHFHLDHCAAVPFVVGRTNFKGRILMTHPTKAIFAMLMNDFVKLNKQGDNSE 136
Query: 101 QYLSRRSVT---RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ V R ++H +G+ V P+ AGH+LG ++ + G V+Y DY
Sbjct: 137 ALFGEKDVQECMRRIEVIDFHQEMDIDGVKVTPYRAGHVLGACMFYVDIGGLRVLYTGDY 196
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLP 216
+R ++HL G L + P V+I +A + PR++RE F D + + L GG VLLP
Sbjct: 197 SRTPDRHLPGADLPP-IPPHVVIVEATYGVSPHSPREERERRFTDMVHRVLTRGGKVLLP 255
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR E+LLILEDYW +H PIY + ++ + ++++ + + +FE
Sbjct: 256 VVALGRAQEVLLILEDYWVKHPELKGVPIYQASALAKRAMTVYQTYINVLNSDMKAAFEE 315
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
S N F+ HV L N S LD+ GP +VLA+ + L++G S D+F W D KN V+
Sbjct: 316 S--NPFVFNHVNHLANSSGLDDV--GPCVVLATPSMLQSGLSRDLFESWCGDSKNGVIIC 371
Query: 335 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+ GTLAR + +D K V + +PL
Sbjct: 372 DFAVQGTLAREILSD--CKTVTSRTGQELPL 400
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVXAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 179/367 (48%), Gaps = 33/367 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVT 109
STID +L+SH H +LPY M++ VF T P +YR LL + + S +
Sbjct: 59 STIDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGVNS 117
Query: 110 RLTYSQN------------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
+ N YH + +GI AGH+LG +++I G V
Sbjct: 118 TIGNDDNIYTDEDLAESFDKIETVDYHSTVDVDGIKFTAFHAGHVLGAAMFQIEIAGLRV 177
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + S +++ + ++P + + I T+ GG
Sbjct: 178 LFTGDYSREMDRHLNSAEVPSLPSDVLIVESTFGTATHEPRLNREKNLTQLIHSTVSRGG 237
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VLLPV + GR E++LIL++YW++H S PIY+ + ++ + ++++ M D
Sbjct: 238 RVLLPVFALGRAQEIMLILDEYWSQHAEELGSGQVPIYYASNLAKKCMSVFQTYVNMMND 297
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
I + F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ +W D
Sbjct: 298 DIRRKFRDSQTNPFIFKNISYLRNLEEFQDF--GPSVMLASPGMLQSGLSRDVLEKWCPD 355
Query: 327 VKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKK 382
KNLVL T GT+A+ ML+ D P +VT+ RR + A+ + Q L+
Sbjct: 356 EKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEVTVPRRCNVEEISFAAHVDFQENLEF 415
Query: 383 EEALKAS 389
E + A+
Sbjct: 416 IEKISAN 422
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVADHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIRVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|47224568|emb|CAG03552.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 43/205 (20%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQ------------------------NYHLSGKGEGIVVAPHVAGHLLG 138
+ +L YSQ ++ +GKG G+ + P AGH++G
Sbjct: 121 SAFDKIQQLKYSQIVSLKGKLACKRLFTWSKLPKYVMAFYATGKGHGLSITPLPAGHMIG 180
Query: 139 GTVWKITKDG-EDVIYAVDYNRRKE 162
GT+WKI KDG E+++YAVD+N ++E
Sbjct: 181 GTIWKIVKDGEEEIVYAVDFNHKRE 205
>gi|260942135|ref|XP_002615366.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
gi|238850656|gb|EEQ40120.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
Length = 940
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 218/908 (24%), Positives = 356/908 (39%), Gaps = 234/908 (25%)
Query: 31 LIDCGWN-DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK--QLGLSAPVFST 87
L D GWN ++ D L + + S P+ + G + MK L + PV++T
Sbjct: 30 LADPGWNGENPDDCLFMEKHLSDVDLLLLSQSTPEFIG-GYILLCMKFPSLMSAIPVYTT 88
Query: 88 EPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGEGIV 127
+ +LG ++ + Y SR +T + Y QN ++ I+
Sbjct: 89 VAISQLGRVSTVEFYRSRGHLGPLQSAFMEVSDVDEWFDKMTSVKYFQN--MTALENRIL 146
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVRPAV 178
+ + +GH LGG+ W ITK E +IYA +N K+ LN G+ + S VRP+
Sbjct: 147 LTAYNSGHTLGGSFWLITKRLEKIIYAPTWNHSKDSFLNSASFLSPTTGSPISSLVRPSA 206
Query: 179 LITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-H 237
+IT + N +++ E F + TL GG VLLP +GR LELL I++++ A
Sbjct: 207 IIT-STELGSNMSHKKRMEKFLQLVDATLANGGAVLLPTTISGRFLELLRIIDEHLANLQ 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--TSRDNA-----FLLKHVTLLIN 290
P+YFL+Y + + Y + L+WM + K +E + D A F V LL N
Sbjct: 266 GAAIPVYFLSYSGTKVLSYAANLLDWMSSQLIKEYEGIAAEDRAYSRVPFEPSKVDLLSN 325
Query: 291 KSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFG--------- 340
EL P GPK+V AS + G S D K ++ TE+ F
Sbjct: 326 PQELIQLP-GPKIVFASGIDFKDGDMSTQALQLLCQDEKTTIILTEKSSFARDNTCTTDL 384
Query: 341 -----TLARMLQADPPPKAVKVTMSRRVPLVG----EELIAYEEEQTRLKKEEALKASL- 390
TLA V V + + +PL EEL E ++ + K +A + L
Sbjct: 385 FQEWYTLASAKNNGVAEDGVPVPLEKAIPLTSWTREEELKDVELQRFKEKVAQARRQKLL 444
Query: 391 --VKEEESKASLGPDNN----------LSGD-------PMVIDANNANASAD---VVEPH 428
V+++++K L D N +S D VI + AN AD V+ H
Sbjct: 445 NKVRDKKNKNILNADLNSDDSSSDEDEISTDEEEKGIEANVISSTTANGQADATSVLNSH 504
Query: 429 GGRYRDILIDGF---VPPSTSVA-------PMFPFYENNSEW--DDFGEVINPDDYIIKD 476
D + + P T V+ MFPF+ ++ + DD+GEVI+P D+ D
Sbjct: 505 EVFVTDYVTENLEANKPVDTRVSYKLKPRQAMFPFFPSSKKRKHDDYGEVIDPKDFQRSD 564
Query: 477 EDMDQAAMHIG-------GDDGKLDE----------------GSASLILDAKPSKVVSNE 513
E+ + I D GK E G + P ++++N+
Sbjct: 565 ENSANNKLIIESKKNFELNDKGKWGEADSYERGRRNFKRGRDGQNNNANKLTPQEILNNQ 624
Query: 514 L----------------------------TVQVKCLLIFIDYEGRADGRSIKTILSHVAP 545
L ++V+C L F+D G D RS+ ILS + P
Sbjct: 625 LLQKTLDTLFRPVKRVPIGPASVMAARSVELKVRCGLSFVDLAGLVDLRSLSMILSALRP 684
Query: 546 LKLV-----------------LVHGSAEATEHLKQHCLKHVCPHV--------------- 573
L+ LV + + L+ H K +
Sbjct: 685 QNLIMLPDATYNPQFKEELDGLVLVNNAFHKQLENHKSKAFSDSINTSSNFDLLALARRG 744
Query: 574 -----------YTPQIEETIDVTSD----LCAYKVQLSEKLMSNVLFKKL-GDYEIAWVD 617
+ + ET+ + + L ++V+L E+L ++++++K+ G Y+++ +
Sbjct: 745 ISKGVSSEMALFVAKGNETLQIGTKGHGTLSEFEVKLDEQLDASLVWQKIDGGYKVSQIQ 804
Query: 618 AE-------------VGKTENG--MLSLLPISTP-------APPHKS-----------VL 644
E V K N L P+S P A S +
Sbjct: 805 GELEIYQPEGVQNDSVDKIINSATQFVLKPVSNPVFESLKNANTEDSLQGSRGDFGPALA 864
Query: 645 VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPL 703
+GD+++ +LK L S+ + EF G L + I+K+ +G +G I IEG +
Sbjct: 865 IGDIRLTELKKKLLSRDLNAEFKSEGTLVVNNAIAIKKISVDNYQGDDTG--DIAIEGQI 922
Query: 704 CEDYYKIR 711
YY+++
Sbjct: 923 GPLYYEVK 930
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 173/357 (48%), Gaps = 30/357 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVAS 53
M ++VTPL + LVSI G N ++DCG +ND F D S + ++
Sbjct: 1 MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTD 60
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLT 97
+D V++SH H GALPY + +G P++ T P V + G
Sbjct: 61 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEAN 120
Query: 98 MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ + + + ++ + + + + + AGH+LG +++I E V+Y DY
Sbjct: 121 FFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDY 180
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
N ++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+P
Sbjct: 181 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 239
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
V + GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 VFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQ 297
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 RNMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 181/390 (46%), Gaps = 34/390 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP---------LSKVASTI 55
+++ PL + LVSI N + DCG + + + P + + I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRSV---TR 110
DAV++SH H GALPY +Q+G P++ T P + LL + + +++RS T
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 111 LTYSQNYHLSGKGEGIV-------------VAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
S+ + IV + + AGH+LG ++KIT E V+Y D+
Sbjct: 124 FFTSEMIKNCMRKVEIVGLHQVINVDDELSIKAYYAGHVLGAAMFKITVGDESVLYTGDF 183
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
N ++HL G +P VLI+++ A + ++ RE F I + + GG VL+P
Sbjct: 184 NMTPDRHL-GAAWADRCKPTVLISESTYATTIRDSKRSRERDFLKKIHRCVENGGKVLIP 242
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
V + GR EL ++LE YW LN P+YF ++ +Y K F+ W + I SF
Sbjct: 243 VFALGRAQELCILLEQYWDRMKLNVPVYFTAGLAEKATNYYKLFVNWTNEKIKSSF--VE 300
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F K++ + E+ GP++ A+ L AG S +IF W +D KN ++
Sbjct: 301 RNLFDFKYIKAF--QKEIHMNQSGPQVCFATPGMLHAGMSLEIFQNWCTDEKNCIIMPGY 358
Query: 337 GQFGTLA-RMLQADPPPKAVKVTMSRRVPL 365
GT+ R+L + K V ++ R+ +
Sbjct: 359 CVAGTVGHRLLHGERHFKFNGVNVTSRIKV 388
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQGNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 77 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 136
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 137 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 196
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 197 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 256
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 257 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 315
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 316 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 373
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 374 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 423
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 173/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG A E LK+ +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKMEFLKEKIKEEFHI 433
Query: 572 HVYTPQIEETIDVTSDL 588
YTP ET + + +
Sbjct: 434 ECYTPANGETCVINTPI 450
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 173/353 (49%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 31/354 (8%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++VTPL G + S LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 63
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYD 100
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 123
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 183
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 PDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFA 242
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N
Sbjct: 243 LGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNM 300
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 FEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|302309220|ref|NP_986485.2| AGL182Cp [Ashbya gossypii ATCC 10895]
gi|299788256|gb|AAS54309.2| AGL182Cp [Ashbya gossypii ATCC 10895]
gi|374109730|gb|AEY98635.1| FAGL182Cp [Ashbya gossypii FDAG1]
Length = 803
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 180/805 (22%), Positives = 337/805 (41%), Gaps = 143/805 (17%)
Query: 22 LVSIDGFNFLIDCGWND--HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA----- 74
++S D LID GW+ +D + + +D +LLS P +GA YA
Sbjct: 19 ILSFDNCTLLIDPGWSGGCSYDECMAY-WKEWIPQVDIILLSQPIQECIGA--YAALFFD 75
Query: 75 -MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTY 113
+ V+ST PV LG + D Y S + + Y
Sbjct: 76 YISHFNSRIQVYSTLPVANLGRVATVDLYASLGIIGPFDTNRIDIEDIDTAFDHLNTVKY 135
Query: 114 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--- 170
SQ L + +G+ + + +G GGT+W E V+YA +N ++ LN L
Sbjct: 136 SQLVDLKSRFDGLSLVAYSSGFAPGGTIWCANTYSEKVLYAPRWNHTRDTILNSADLLDK 195
Query: 171 -----ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLE 225
+ +RP+ +I A + + P R++ + F++ I K L A +V+LP G+ LE
Sbjct: 196 GGKPSTALMRPSAVIMSAAHVGPSTPYRKRSQKFKEVIKKALSANTSVILPSAIGGKFLE 255
Query: 226 LLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA- 279
L +++ D E+ + P+ L+Y T+ Y +S LEW+ + K++E SRDN
Sbjct: 256 LFVLVHDILHENKKSGLQADAPVLLLSYSRGRTLTYARSMLEWLSSQLVKTWE-SRDNKS 314
Query: 280 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F L + ++N ++L N P G K+ S +D + + K +++ TE+
Sbjct: 315 PFDLGNRLKIVNVNDLANYP-GTKICFISQVET---LINDALSKVCTKEKAMLVLTEKPT 370
Query: 339 F-----GTLAR---------------MLQADPPP--KAVKVTMSRRVPLVGEELIAYEEE 376
+ LA+ ++ +P +++ + S+ PL G +L EE
Sbjct: 371 YYSHTIAILAKAYAKWERALNSNNLNAVEGNPIAYSESLSLQFSKTKPLTGSDL---EEF 427
Query: 377 QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDIL 436
+ R++ +A L+ +S DN ++ + DV+ PHG
Sbjct: 428 KERIEARRKERAELLSSFQSN-----DNPAGASAFTAIEDDDDEEEDVLRPHGAGALSTK 482
Query: 437 IDGFVPPSTSVAP-------MFPFYENNSEWDDFGEVINPDDYI------------IKDE 477
++ +P + P MFPF DD+GE+++ + ++ +E
Sbjct: 483 VE--IPTDLIIQPNALPKHKMFPFQPGKVAHDDYGELVDFERFLPQSAPSSAKRGATNEE 540
Query: 478 DMDQAAMH---------IGGDDGKLDEGSASLILD----------AKPSKVVSNELTVQV 518
D + H GG + ++ + ++ KP SN V +
Sbjct: 541 DEESYDPHDFEDIRRNGSGGKRRRREQDALQRQMNQDNLSYLDTLTKPQHRTSNTQKVVI 600
Query: 519 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQI 578
+C + F+D G D RS+ I + P K+VL+ A + + Q L+ V P++
Sbjct: 601 RCTMAFVDLAGLVDERSMSIIWPALKPRKMVLLPSDAASVSPVAQQ-LQKKGLDVIEPEL 659
Query: 579 EETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWV--------DAEVGKTENGMLS 629
+++ + + L + + + ++ + ++++ + Y +A V D +V + +L
Sbjct: 660 NKSLVINTSLRSLDIFIDAEMDQMLNWQRISEVYTVAHVVGRLTKEKDTKVSHRDKWVLK 719
Query: 630 LLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
LP S S+ +GD+++A+LK L++ EF G G L V +RK+ +
Sbjct: 720 PLPNASARMQTTDSLRIGDVRLAELKRKLTAASHVAEFRGEGTLVVDGRVIVRKISES-- 777
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRA 712
+ V++G + +YK+++
Sbjct: 778 --------ETVVDGTPSDLFYKVKS 794
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFTDNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|224009389|ref|XP_002293653.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
gi|220971053|gb|EED89389.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
Length = 347
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 176/351 (50%), Gaps = 38/351 (10%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPY-- 73
P LV G L++ GW++ S+ + +DA+L++ LG LP
Sbjct: 1 PSCTLVEYAGMKLLLNAGWDETLPAATSVSDIIPNELPDVDAILITDSTLSSLGGLPMYF 60
Query: 74 -AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS--------------------RRSVTRLT 112
+ + P +T P ++G +T+YD + S SV L
Sbjct: 61 GGNQDKKRNPPFLATYPTVKMGQMTLYDHHASLSLDGTHPGYSLDDVDAVFGEESVITLK 120
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGT--VWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
YSQ + + + + PH++GH++GG V K D +VI A Y+ KEKHL G+ L
Sbjct: 121 YSQTLNSKTSNKLLSITPHLSGHVVGGCYYVLKQLADDTEVILAPTYHHAKEKHLAGSTL 180
Query: 171 ESF-VRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
F V L+T A N R + EM + ++ LR GNVLLPVD++GRVLELLLI
Sbjct: 181 HKFGVNADALLTMPGGARGN---RSEAEMIESMMA-ALRRDGNVLLPVDASGRVLELLLI 236
Query: 230 LEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
L+ YW L Y + ++ ++ +TI++ +S LEWM + + F++ R + + LK V +
Sbjct: 237 LDRYWERQRLGGAYNLCWVGPMALNTIEFARSQLEWMAEPLGAQFDSQRGHPYALKSVRI 296
Query: 288 LINKSELDNAPD----GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ +EL++ + P VLAS +SL+ G + D+ ++W + NLVL T
Sbjct: 297 CSSVAELESVIESSNGNPTAVLASGSSLDHGPARDLLLKWGDNPDNLVLIT 347
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVHDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTSDL 588
LKQ + + Y P ET+ + + L
Sbjct: 423 LKQKIEQELRVSCYMPANGETVTLPTSL 450
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVEHGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 175/353 (49%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETVEKGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNDKNMVIM 350
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 173/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG A E LK +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKMEFLKDKIREEFHI 433
Query: 572 HVYTPQIEETIDVTSDL 588
+TP ET +T+ +
Sbjct: 434 DCFTPANGETCVITTPI 450
>gi|389746898|gb|EIM88077.1| hypothetical protein STEHIDRAFT_94995 [Stereum hirsutum FP-91666
SS1]
Length = 968
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 194/451 (43%), Gaps = 113/451 (25%)
Query: 9 PLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL---------LQPLSKVAS 53
PLSG + PL+YL+ +D + L+DCG W FD L Q L + A
Sbjct: 6 PLSGAAKSDRLVPLAYLLQVDDVHILLDCGSPDWCPEFDDGLNVSAHWETYCQSLKEAAP 65
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR------- 106
TID VLLSH D H G PYA + GL AP +ST PV + + ++ S R
Sbjct: 66 TIDLVLLSHGDLAHSGLYPYAYARWGLKAPAYSTLPVQAMARIAATEESESIRDEQDVDA 125
Query: 107 ----------------SVTRLTYSQNYHLSGKGEGIVVAP-------------------H 131
S R+ S + V P H
Sbjct: 126 GYQSDQPQDGEDKVEDSGERVDESGPSSAVQRKAKYVATPSEVQEAFDSINTLRYSQPTH 185
Query: 132 VAGHLLGGTV-------------WKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------- 170
+ G G T+ WKI + ++YAV+ N +E+HL+GTVL
Sbjct: 186 LQGKCQGVTITPFNAGHTLGGTIWKIRSPSAGTIMYAVNMNHMRERHLDGTVLMRQGGGI 245
Query: 171 -----ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 224
E RP +LITDA A R+ R+ D I+ L + ++LLP D++ RVL
Sbjct: 246 APGVFEPLARPDLLITDAARADVLSSRRKDRDASLIDTITAALSSRSSLLLPCDASTRVL 305
Query: 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS------------- 271
ELL++L+ +W+ L YPI L+ + +V+S +EW+G +++K
Sbjct: 306 ELLVLLDQHWSFARLKYPICLLSRSGREMLTFVRSMMEWLGGTVSKEDVGEEVTSGGRDG 365
Query: 272 --------FETSRDN------AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGF 315
+ D+ A KH+ +N L + PKL+LA ASL G
Sbjct: 366 GKRGKKRKKDNDEDDDVIGAFALRFKHLEFFLNPQALQQTYSSKDPKLILAVPASLSHGP 425
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARML 346
S +F ++AS N+VL T RG+ GTL+R+L
Sbjct: 426 SRSLFADFASIPDNVVLLTSRGEEGTLSRVL 456
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 70/322 (21%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK--PS 507
MFP+ E + D++GEV++ ++ + + +++ + D + E + PS
Sbjct: 653 MFPYVEKRRKVDEYGEVLDVGMWVRRGKILEEDSNE---DAREEKEKEEEAKRAPREPPS 709
Query: 508 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 565
K VS + VQ+ C L+F+D EG DGR+ KTI+ V P K+++VHGS ATE L C
Sbjct: 710 KFVSRIVEVQLACRLLFVDLEGLNDGRATKTIIPQVNPRKMIIVHGSPSATEALIDSCSN 769
Query: 566 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 625
++ + V+ P + E++ + + ++ + LS+ L++++ + D E+ +V + T +
Sbjct: 770 IRAMTKDVFAPSVGESVQIGQNTSSFSISLSDDLLASMKMSRFEDNEVGYVTGRIAITAS 829
Query: 626 GMLSLL------------------------PIST----PAP---------PHKSVLVGDL 648
+ +L P+ T P P PH S ++G+L
Sbjct: 830 STVPILQPLSNAPTSPSTTTSTSTSSPSPMPLRTLPDRPRPIGSLPTLRLPH-STMIGEL 888
Query: 649 KMADLKPFLSSKGIQVEFAG-GALRCG--------------EYVTIRKVGPAGQKGGGSG 693
K+ LK L+S GIQ E G G L CG E V +RKVG
Sbjct: 889 KLTALKSRLASIGIQSELVGEGVLICGTKGGGGLSLGESLGESVAVRKVGRG-------- 940
Query: 694 TQQIVIEGPLCEDYYKIRAYLY 715
++ +EG + + Y+++R +Y
Sbjct: 941 --RVELEGGVSDVYFRVRKEIY 960
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ + P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT + A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITGSTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDP-SLLQPLSKV-ASTIDAVLLSHP 63
VTPL G NE S + +S G + L DCG + F S L ++ ST+D +L++H
Sbjct: 22 VTPL-GAGNEVGRSCVYMSYKGKSILFDCGIHLGFSGMSALPYFDEIDPSTLDVLLITHF 80
Query: 64 DTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------TMYDQYLSRRSV 108
H +LPY +++ VF +T+ +Y+L L ++D+ RS+
Sbjct: 81 HLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLFDEQDINRSM 140
Query: 109 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
++ ++H + + GI + AGH+LG ++ + G V+Y DY+R +++HL
Sbjct: 141 DKIEVI-DFHQTVEVNGIRFWCYAAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 199
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+ F +I Y H+QP + + F D I T+ GG VL+P + GR ELLL
Sbjct: 200 EIPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLL 259
Query: 229 ILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
IL++YWA H N PIY+ + ++ + +++ M D + + ++ N F KH++
Sbjct: 260 ILDEYWANHPELHNIPIYYASPLAKKCLTVYETYTLSMNDRV----QNAKSNPFSFKHIS 315
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L S ++ D GP +V+AS L++G S +F +W SD KN + GTLA+
Sbjct: 316 AL---SSIEVFKDVGPSVVMASPGGLQSGLSRQLFDKWCSDKKNTCVLPGFVVEGTLAKT 372
Query: 346 LQADP 350
+ +P
Sbjct: 373 IMTEP 377
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 169/352 (48%), Gaps = 30/352 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 13 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRNGRLTDFLDC 72
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 73 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 132
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 133 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 192
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV +
Sbjct: 193 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 251
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 252 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 309
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 310 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVI 358
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 184/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 28 GDQLIITPL-GAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS----- 81
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 82 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSK 134
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + + + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 135 VSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 194
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL L F +I Y +QP + + F D I T+ GG
Sbjct: 195 YTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGR 254
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H PIY+ + ++ + ++++ M + I
Sbjct: 255 VLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRN 314
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH+ L + +DN D GP +V+AS L++G S +F +W +D KN
Sbjct: 315 QFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKN 369
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 370 SCVIPGYVVEGTLAKTIINEP 390
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 39/365 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LV+I G + DCG + F+ P +SK S ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-----------------GLLTMYD 100
V++SH H GALPY + G + P++ T P + + + D
Sbjct: 61 VIISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEVCPVLLDDFRKIVGAKGDNIFSYQD 120
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ VT ++ S+ Y E + P+ AGH+LG ++ + + V+Y DY+
Sbjct: 121 IVNCMKKVTTISMSETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTT 177
Query: 161 KEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDS 219
+KHL ++ VRP +LIT++ Y ++ R + F AIS + GG VL+P+ +
Sbjct: 178 PDKHLGPASIKC-VRPDLLITESTYGSITRDCRRVKEREFLKAISDCIARGGRVLIPIFA 236
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETSRDN 278
GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE N
Sbjct: 237 LGRAQELCLLLDGYWERTGLKVPVYFSSGLTEKANEIYKKFISYTNETVKKKIFER---N 293
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTE 335
F KH+ K +DN +GP ++ AS L +G S +F EW SD KNLV+ +
Sbjct: 294 VFEYKHIKPF-QKYYMDN--EGPMVLFASPGMLHSGMSLRMFKEWCSDEKNLVIIPGYCV 350
Query: 336 RGQFG 340
RG G
Sbjct: 351 RGTIG 355
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 173/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ P ++LVHG A E LK+ +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKMEFLKEKIREEFRI 433
Query: 572 HVYTPQIEETIDVTSDL 588
YTP ET +++ +
Sbjct: 434 ECYTPANGETCTISTPI 450
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 173/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V VK + ++ + AD + I ++ P ++LVHG A E LK+ +
Sbjct: 374 NRQVVDVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKMEFLKEKIREEFKI 433
Query: 572 HVYTPQIEETIDVTSDL 588
YTP ET +++ +
Sbjct: 434 ECYTPANGETCTISTPI 450
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 184/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 28 GDQLIITPL-GAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS----- 81
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 82 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSK 134
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + + + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 135 VSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 194
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL L F +I Y +QP + + F D I T+ GG
Sbjct: 195 YTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGR 254
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H PIY+ + ++ + ++++ M + I
Sbjct: 255 VLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRN 314
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH+ L + +DN D GP +V+AS L++G S +F +W +D KN
Sbjct: 315 QFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKN 369
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 370 SCVIPGYVVEGTLAKTIINEP 390
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 182/376 (48%), Gaps = 52/376 (13%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + ++ G L DCG + D DPS
Sbjct: 24 VTPL-GAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPS---------- 72
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTR 110
T+D +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+ SV
Sbjct: 73 TVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKL-LLSDYVK-VSKVSVDD 130
Query: 111 LTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ Y + ++H + + GI + AGH+LG ++ + G V+Y DY
Sbjct: 131 MLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 190
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
+R +++HL F +I Y H+QP + + F D I T+ GG VL+P
Sbjct: 191 SREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPA 250
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I + +
Sbjct: 251 YALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI----QNA 306
Query: 276 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ N F KH++ L S +D D GP +V+AS L++G S +F W SD KN +
Sbjct: 307 KSNPFAFKHISAL---SSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIP 363
Query: 335 ERGQFGTLARMLQADP 350
GTLA+ + +P
Sbjct: 364 GYVVEGTLAKTILNEP 379
>gi|320581695|gb|EFW95914.1| Ca2+/calmodulin-dependent protein kinase [Ogataea parapolymorpha
DL-1]
Length = 1184
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 199/832 (23%), Positives = 344/832 (41%), Gaps = 158/832 (18%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80
L++ DG N L D GW+ D S L+P I ++LS T +LGA Y + + +
Sbjct: 59 LLTFDGQLNILADPGWDGVSDISYLEPH---IPNIHLIILSQTTTEYLGAFAYLLYKYPI 115
Query: 81 SAPV--FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYH 118
V ++T PV +LG L + Y S S+ + YSQ+
Sbjct: 116 LRKVKTYATLPVSKLGRLATIELYRSAGLVGPLKGAVLDVEDVENYFNSIITVNYSQSVS 175
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTV-LESFVRP 176
L+G GI + + +GH LGG+ W + KD E ++YA +N K+ L G + L + +R
Sbjct: 176 LTGNLSGITITAYNSGHTLGGSFWLLNKDAEKIVYAPTWNHSKDYFLKPGRLNLPNLLRA 235
Query: 177 AVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 236
LI+ + + + + F + + TL G ++LLP GR+LELL +L+
Sbjct: 236 TTLIS-GSDLGSSLSHKMRISKFMELVKLTLMNGTSILLPTSVTGRLLELLPLLDQ---- 290
Query: 237 HSLNYPI----YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
N P+ Y L++ ++++ + LEWM ITK++E F + L I+
Sbjct: 291 ---NVPVDINFYLLSFTGKKSLEFSGNMLEWMSPDITKNWENQNQTPFESNRLKL-ISLR 346
Query: 293 ELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
+L + PK++ L G S D F+E S ++ TER + T A + +
Sbjct: 347 DLASLDHRPKIIFVDGTDLNEGSLSRDCFIELCSKHNTALIMTERPEVNTTAYDVYKEWE 406
Query: 352 PKA-----------------VKVTMSRRVPLVGEELIAYE---EEQTRLKKEEALKASLV 391
K + ++ +R L G EL AY+ EE+ + +KE+ ++ L
Sbjct: 407 SKVKNDNNLKDGALTILEKQMSLSATREEKLRGSELNAYKKSVEERRQRRKEQEVQERLN 466
Query: 392 KE-------EESKASLGPDNNLSGDPMVIDANNANA-----------------SADVVEP 427
+ E+ G+ DA N SA E
Sbjct: 467 NDLLDTLIGEDEDDDDDDSEFSDGEDAGADAENGENGEVKTTTTSTALTQSTHSAKDEEE 526
Query: 428 H--GGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM------ 479
H + + +D V + MFPF DD+GEVI D++ ++E
Sbjct: 527 HITVDQILQMPMDFDVRNAKGRNRMFPFIVKKVSVDDYGEVIRHSDFMREEEKFPLNKPT 586
Query: 480 ----DQAAMHIGGDDGKLDEGS----------ASLILDAKPSKVVSN------------- 512
+ + ++GK + A+++ K V N
Sbjct: 587 YEEEVEEVVEEYLENGKKKRRTVKRPVKKIRKATVVEQVKEKDTVYNLDALADPKVRSIK 646
Query: 513 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH 572
++V+++C L F+D G AD RS++ + V P K++L+ + +A + V
Sbjct: 647 PISVEIRCGLAFVDLSGLADLRSMRITFNSVKPRKVILLPNTTQAYMGGALDVMDAVMAQ 706
Query: 573 -------VYTP--------------QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GD 610
+Y + E ID+ + + +Y + +S +L + + ++ + G
Sbjct: 707 QKSKMLAIYQADDASGILGTDYILSKFNEKIDLGNVVTSYDLVISNELNNTLNWQAITGG 766
Query: 611 YEIAWVDAEVGKTENG--MLSLLPISTP--APPHKSVLVGDLKMADLKPFLSSKGIQVEF 666
Y IA V EV G L L+P + P S+ +GD+K+A+L+ L+ VEF
Sbjct: 767 YSIAHVYGEVVPVAPGDKHLKLVPPTNTNLMPVSNSISIGDIKLAELRRKLTELNHAVEF 826
Query: 667 AG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQ 717
G G L + +RKV +VI+G + + +Y++R+ + S+
Sbjct: 827 RGDGTLVVNNQLAVRKVTDGN----------LVIDGAMGQLFYQVRSLVMSK 868
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 197/407 (48%), Gaps = 31/407 (7%)
Query: 2 GTSVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAV 58
G + VTPL G NE S L+ G L DCG + F P S ID V
Sbjct: 36 GEKLVVTPL-GAGNEVGRSAVLLQFKGKTVLFDCGIHPAFTGMASLPFFDTIEPSEIDLV 94
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVTRLTYSQ 115
L++H H GALPY + VF T P +Y+L LLT + + +L Q
Sbjct: 95 LVTHFHLDHCGALPYFTEHTNFQGRVFMTHPTKAIYKL-LLTDFVKVSDVHVDDQLFTEQ 153
Query: 116 N------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
N YH + GI + AGH+LG ++ + G V+Y D++R+ ++
Sbjct: 154 NLLDSLKKIELIDYHQELEHNGIKFWCYNAGHVLGAAMFMVEIAGVRVLYTGDFSRQPDR 213
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 222
HL G + + P VLI ++ + + +RE F +++ ++ GG L+PV + GR
Sbjct: 214 HLLGAETPT-MSPDVLIVESTYGIQVHESQSEREKRFTQMVTEIVKRGGRCLIPVFALGR 272
Query: 223 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
ELLLIL+++W H + PIY+ + ++ + ++++ M D I K F+ N F
Sbjct: 273 AQELLLILDEFWETHQDLQHIPIYYASSLAKKCMTIFQTYINMMNDKIRKQFDIH--NPF 330
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+ KH++ L +S D +GP +++AS L++G S ++F W D KN V+ G
Sbjct: 331 VFKHISNL--RSIEDFQDNGPCVIMASPGMLQSGLSKELFELWCQDAKNGVIIAGYSVDG 388
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL-VGEELIAYEEEQTRLKKEEAL 386
TLA+ + ++ P+ V ++ VPL + I++ + + EE +
Sbjct: 389 TLAKKIMSE--PETVTLSNGNTVPLRMSVRTISFSAHSDKAQTEEFI 433
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 169/364 (46%), Gaps = 30/364 (8%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
+ VTPL + L+SI G N ++DCG + F D S + + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYD 100
V++SH H GALPY + +G S PV+ T P V R G +
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ R + ++ + + + + + AGH+LG +++I + V+Y DYN
Sbjct: 123 SAMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMT 182
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL L+ RP +LIT++ A + ++ RE F + + GG VL+PV +
Sbjct: 183 PDRHLGAAWLDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFA 241
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F + N
Sbjct: 242 LGRAQELCILLETYWDRMNLRVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQRNM 299
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+
Sbjct: 300 FDFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVA 356
Query: 340 GTLA 343
GT+
Sbjct: 357 GTVG 360
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|398396344|ref|XP_003851630.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
gi|339471510|gb|EGP86606.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
Length = 1108
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 182/420 (43%), Gaps = 85/420 (20%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
T L G +++P S L+ +DG L+D GW++ FD LQ L K ST+ +LL+H
Sbjct: 5 TALLGAQSDSPASQSLLELDGGVKLLVDVGWDETFDAEKLQTLEKHVSTLSVILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
H+GA + K + PV++T PV LG + D Y S
Sbjct: 65 EHIGAYAHCCKHIPAFNKIPVYATTPVINLGRTLIADIYASSPLAASVIPTSSISSSPVA 124
Query: 106 -----------------------RSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLL 137
+ L YSQ + S + + + AGH +
Sbjct: 125 LAPESTPNLLFQPPTADEIASYFNLIHPLKYSQPHQPIPSPWSPSLGNLTITAYSAGHTI 184
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-----------VLESFVRPAVLITDAYNA 186
GGT+W I E ++YA D+N+ +E L+G ++E+ RP LI +
Sbjct: 185 GGTIWHIQHSMESIVYAADWNQGRENLLSGAAWLGSTSGGAEIIEALRRPTALICSSKGV 244
Query: 187 LHNQP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYP-- 242
PR++R E I T+ GG VL+P DS+ RVLEL +L W E+ +N P
Sbjct: 245 EKTDTMPRKKRDETLVGLIRDTIAQGGKVLIPTDSSARVLELAFVLNQNWKEN-INGPHA 303
Query: 243 -------IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL----------LKHV 285
IY + SSST+ ++ LEW+ +SI + E + + + V
Sbjct: 304 DTYRHAKIYMASKTSSSTVRQLQGMLEWLDESIIRDAEVAMGQQQVENQKVPTLLDWRFV 363
Query: 286 TLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
+ KS+ D A P ++LAS ASLE GFS ASD +NLV+ TE G A
Sbjct: 364 KQIERKSQFDRALKRSSPCILLASDASLEWGFSRSALESLASDSRNLVVLTETVSHGKSA 423
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P K+V TV + + +D+ G + R ++ ++ + P KL+L+ GS T+ L + C
Sbjct: 701 PQKIVFTTQTVALHLRIAHVDFSGLHEKRDLQMLIPLIRPRKLILISGSMSETQTLAEDC 760
Query: 566 LKHVC-----PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDY 611
+ + V+ P I E +D + D A+ ++LS +L+ + ++ + G
Sbjct: 761 RQLLAGDGNSTDVFAPIIGEMVDASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRL 820
Query: 612 EIAWVD----AEVG-----------KTENGMLSLLPISTPAPP----------------- 639
E V+ A+ G K E+ ++ L + P+ P
Sbjct: 821 EAEEVETDEVADQGDKKKLKLIKNEKEEDTKMTGLE-ARPSMPVLDLVNMMAAGGVGVVH 879
Query: 640 HKS---VLVGDLKMADLKPFLSSKGIQVEFAG 668
H++ V VGDL++ADL+ + G EF G
Sbjct: 880 HRATQPVHVGDLRLADLRNLMRESGHTAEFRG 911
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+ + + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKT--SVQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 168/352 (47%), Gaps = 30/352 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVI 349
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGN 212
DY+R +++HL L F P + I ++ + + R RE F D I T+ GG
Sbjct: 187 TGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGR 245
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M D I
Sbjct: 246 VLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRN 305
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W SD KN
Sbjct: 306 QFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 362 CIIPGYMVEGTLAKTIINEP 381
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGN 212
DY+R +++HL L F P + I ++ + + R RE F D I T+ GG
Sbjct: 187 TGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGR 245
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M D I
Sbjct: 246 VLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRN 305
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W SD KN
Sbjct: 306 QFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 362 CIIPGYMVEGTLAKTIINEP 381
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGN 212
DY+R +++HL L F P + I ++ + + R RE F D I T+ GG
Sbjct: 187 TGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGR 245
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M D I
Sbjct: 246 VLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRN 305
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W SD KN
Sbjct: 306 QFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 362 CIIPGYMVEGTLAKTIINEP 381
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 186/390 (47%), Gaps = 50/390 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 20 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 73
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 74 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSK 126
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + Y + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 127 VSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 186
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 187 YTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGR 246
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 247 VLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINSMNERIRN 306
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH++ L ++N D GP +V+AS L++G S +F W SD KN
Sbjct: 307 QFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 361
Query: 330 LVLFTERGQFGTLARMLQADPPPKAVKVTM 359
+ GTLA+ + +P V M
Sbjct: 362 ACVIPGYVVGGTLAKTIINEPKENCQSVEM 391
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 181/364 (49%), Gaps = 24/364 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
+++TPL + + G + + DCG + + P ST+DA+L++H
Sbjct: 18 LRITPLGAGSEVGRSCVMATYKGKSVMFDCGVHPGYAGIASLPYFDEVDLSTVDALLVTH 77
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRSVTRLTYSQ------ 115
H A+P+ + + T P + + M D L + + + +++
Sbjct: 78 FHLDHCAAVPFLVGHTNFKGRILMTHPTKAIFNMLMTDFVKLQKNNDSEALFTEQDLKAA 137
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
++H +G+ V P+ AGH+LG ++ + DG V+Y DY+R ++HL G
Sbjct: 138 IAMIEVVDFHQEIVIDGMKVTPYRAGHVLGACMFFVDIDGLRVLYTGDYSRTPDRHLPGA 197
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L S V P V+I+++ + PR++RE F D + + L GG VLLPV + GR ELL
Sbjct: 198 DLPS-VPPHVVISESTYGVSPHTPREEREKRFTDRVYQILNRGGKVLLPVVALGRAQELL 256
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILED+W +H N PIY + ++ + ++++ + + +FE + N F+ HV
Sbjct: 257 LILEDHWKKHPELANVPIYQASALARRAMTVYQTYINVLNSDMKAAFEEA--NPFVFNHV 314
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L + LD+ GP +VLA+ + L++G S ++F W D N V+ + GTLAR
Sbjct: 315 QHLSHAGGLDDV--GPCVVLATPSMLQSGLSRELFEMWCGDANNGVIIADFAVQGTLARE 372
Query: 346 LQAD 349
+ +D
Sbjct: 373 ILSD 376
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 173/353 (49%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + I E V+Y DYN
Sbjct: 124 QMIKDCMKKVIPLNLHQTVQVDDELEIKAYYAGHVLGAAMVHIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 164/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 55 LVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYF 114
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ + +
Sbjct: 115 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVRLHQ 174
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 175 TVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 233
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 234 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 293
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 294 NLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 350
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 351 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 384
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHECVSKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 178/365 (48%), Gaps = 25/365 (6%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-STIDAVLLSHPD 64
+TPL +++ GF ++DCG + P +S++ + ID VL++H
Sbjct: 53 ITPLGAGQEVGRSCHILKFKGFTIMLDCGIHPGLKGKASLPFVSQIELNKIDLVLITHFH 112
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRL------------GLLTMYDQYLSRRSVT 109
H GALP+ +++ S VF +T+ +YR MY S+
Sbjct: 113 LDHCGALPWLLERSTFSGRVFMTPATKAIYRWILEDYVRVSNISNFAEMYSLEDVENSLA 172
Query: 110 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169
++ + +YH +G+ P+ AGH+LG ++ I G ++Y D++R +++HL
Sbjct: 173 KIE-TISYHQETNMDGVRFTPYCAGHVLGACMFDIEIAGVRLVYTGDFSREEDRHLMAAE 231
Query: 170 LESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+ P +LIT++ + RQ RE F I + GG L+PV + GR ELLL
Sbjct: 232 VPPN-SPDILITESTFGVRQHESRQTREHRFTKTIHDVVDRGGRCLIPVFALGRAQELLL 290
Query: 229 ILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
IL+DYW H PIY+ + ++ + K+++ M +SI K+ S +N F +HV+
Sbjct: 291 ILDDYWQNHDELHRVPIYYASALARRCMAVYKTYVNVMKESIQKTI--SINNPFNFRHVS 348
Query: 287 LLINKSELDNA-PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
+ N + D GP ++LAS L++G S +IF WAS+ N VL GTLA+
Sbjct: 349 YIRNLHQFDGEYGGGPCVMLASPGMLQSGLSREIFERWASNKANCVLLAGYVVNGTLAKD 408
Query: 346 LQADP 350
L P
Sbjct: 409 LLKAP 413
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +KS +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKSYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK +
Sbjct: 374 NRQIVEVKMTVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEYLKDKIKQEFGI 433
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCIITT 448
>gi|388853919|emb|CCF52417.1| uncharacterized protein [Ustilago hordei]
Length = 1033
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 135/508 (26%), Positives = 216/508 (42%), Gaps = 140/508 (27%)
Query: 15 NENP--LSYLVSIDGFNFLIDCGWNDHF------------------------------DP 42
E+P L+YL+ +D LIDCG + F DP
Sbjct: 31 QEHPRALAYLLQMDDVRVLIDCGSPEDFVFSNSVSASTSDNHDGKAESSSMAQQREASDP 90
Query: 43 S------------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
+ L L ++A TID VLLSH HLG YA +LGL V++T PV
Sbjct: 91 TASFDLDQLKAAPLDTLLRQLAPTIDLVLLSHSSLDHLGLFAYAHAKLGLRCQVYATMPV 150
Query: 91 YRLGLLTMYDQYLSRRS-------------------------------VTRLTYSQNYHL 119
+G LT+ + + RS + + Y Q HL
Sbjct: 151 QSMGKLTVLEAIQTWRSEVDIEKESSSSSFNTHRCLPTANEVEDAFEEIKTVRYMQPTHL 210
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-------- 170
GK + + + AGH LGG +WKI + V+ A+D+N +E+HL+GT+L
Sbjct: 211 EGKCASLTLTAYNAGHSLGGAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAAAP 270
Query: 171 ---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++ RP +LIT+ L R+ R+ D + T++AG ++L P+D++
Sbjct: 271 GAPGSGSGSDAVRRPDLLITEIERGLVTNTRRKDRDAALIDLVHTTIQAGNSLLFPIDAS 330
Query: 221 GRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFETSR 276
R+LEL+++L+ +WA H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 331 ARLLELMVLLDQHWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANETIE 389
Query: 277 DNA------------------FLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFS 316
N K+V + + +D A D K+VLA S+ G S
Sbjct: 390 ANQDKSKPPNRGNRSAAASSPLDFKYVKVYSSLQAMDEAIPQDQAKVVLAVPPSMTHGPS 449
Query: 317 HDIFVEWASDVKNLVLFTERGQFGTLARML--------------------QADPPPKAVK 356
+ +A + ++V+ RG+ G+L R L +A P V+
Sbjct: 450 RRLLARFAKNPNDVVVLISRGEPGSLCRQLWDAWNTNQGKGFAWAQGKLGEAVTPNTRVR 509
Query: 357 VTMSRRVPLVGEELIAY-EEEQTRLKKE 383
+ RVPL GEEL A+ E EQ ++
Sbjct: 510 FELKSRVPLEGEELRAHLEAEQAERDRQ 537
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK---- 505
+FP E D FGEVI+ ++ + ++ A L +A+L L+AK
Sbjct: 656 LFPAIERKRMVDGFGEVIDVARWLSRRRALEAAESAA---ADTLSPENAALSLEAKRKKA 712
Query: 506 -----------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
PSK ++ ++ V++ C + FI+ G DGR++KT++ + P +LV+V+G
Sbjct: 713 AEEEARLAAAIPSKYITEQIEVKLGCRIAFIEMAGLNDGRALKTLIPQLHPRRLVMVNGD 772
Query: 555 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
E + +K + V+ P+ E++ + +Y V+L E L++ + + ++E
Sbjct: 773 EGTKEDMLGVLAAIKSLTKDVFVPRWMESVQIGEVTNSYTVKLGEGLLAGLELSRFEEFE 832
Query: 613 IAWVDAEV 620
IA V A V
Sbjct: 833 IAHVRALV 840
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 167/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + + + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKAVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|453084596|gb|EMF12640.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 964
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 180/407 (44%), Gaps = 79/407 (19%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++P S L+ +DG L+D GW++ FD L L + +T+ VLL+H
Sbjct: 5 TPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEQLHALERHVATLSVVLLTHATL 64
Query: 66 LHLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLSR---------RSVTR---- 110
HLGA + K + + PV++T PV LG + D Y S R++
Sbjct: 65 DHLGAYAHCCKHIPHFRNVPVYATTPVVNLGRTLITDLYASAPLAAGVIPARAIAANTAL 124
Query: 111 ---------------------------LTYSQNYH-----LSGKGEGIVVAPHVAGHLLG 138
L YSQ + S + + + AGH G
Sbjct: 125 APDATPSLLFPAPSADEIAAYFGAIHPLRYSQPHQPVPSPFSAPVGNLTITAYSAGHTPG 184
Query: 139 GTVWKITKDGEDVIYAVDYNRRKEKHLNG--------TVLESFVRPAVLITDAYNALHNQ 190
GT+W I E ++YA D+N+ +E L+G + E RP LI + +
Sbjct: 185 GTIWHIQHSLESIVYAADWNQGRENLLSGAAWLSGGSNITEGLQRPTALICSSRGVEKTE 244
Query: 191 P-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LN 240
R++R E I +T+ GG VL+P DS+ RVLEL IL W E+ N
Sbjct: 245 TLTRKKRDEALISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENVEGPHADTYRN 304
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD----------NAFLLKHVTLLIN 290
IY + S ST+ + S LEWM D+I + E + N + + + +
Sbjct: 305 ARIYMASKTSKSTVRQLSSMLEWMDDAIIRDAEAAMSKTQADEGRVPNLLDWQFIQQIES 364
Query: 291 KSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
K++LD A P ++LAS ASLE GFS + A D +NLV+ TE
Sbjct: 365 KNKLDQALRRRRPCILLASDASLEWGFSRQAMEKLAEDPRNLVILTE 411
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 64/311 (20%)
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV--SNELTVQV 518
DD +I ++ D ++ D + DEG D P K V +++L +Q+
Sbjct: 653 DDIDALIAKATGVVGGGDAPESGSEDDESDYEPDEGE-----DKPPRKAVFVTSQLALQI 707
Query: 519 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC----LKHVCPH-- 572
+ + ID+ G + R ++ ++ + P KL+L+ GS T+ L + C K P
Sbjct: 708 R--IAHIDFSGLHEKRDLQMLIPLIRPRKLILISGSVSETQILAEECRQLLFKGGEPKSD 765
Query: 573 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF--------------------------- 605
V+ P I E +D + D A+ ++LS +L+ + +
Sbjct: 766 VFAPVIGEVVDASVDTNAWTIKLSRQLVKKLTWQNVRGLGVVAVTARLDAEPLEDGSRDA 825
Query: 606 ------KKL----GDYEIAWVDAEVGKTENGMLSLL----PISTPAPPHKS--VLVGDLK 649
KKL GD E D++ G+T + +L IST + + V VGDLK
Sbjct: 826 EDENVKKKLKMIKGDAEGGDEDSKAGRTGIPAVPVLDLVQSISTTSHQRATQPVHVGDLK 885
Query: 650 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ---KGGGSGTQQIVIEGPLCE 705
+AD++ + G +F G G L V +RK P+G+ + G +G +Q E
Sbjct: 886 LADMRKMMIDSGHSADFRGEGTLLIDHTVMVRK-SPSGRIEVEAGPAGLRQPQFRTRDYE 944
Query: 706 -DYYKIRAYLY 715
+Y +R +Y
Sbjct: 945 GSFYAVRKLIY 955
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 176/363 (48%), Gaps = 30/363 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVYIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGMTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+ G
Sbjct: 301 EFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQG 357
Query: 341 TLA 343
T+
Sbjct: 358 TIG 360
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHECVLKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 48/394 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G +++ PL ++ G L DCG + D DPS
Sbjct: 13 GEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPS------ 66
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 67 ----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-ISKG 120
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + Y + ++H + + GI + AGH+LG ++ + G V+Y
Sbjct: 121 SVEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLY 180
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F + I++T+ GG V
Sbjct: 181 TGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRV 240
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I
Sbjct: 241 LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQ 300
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
+E S N F KH++ L + + ++ GP +V+AS + L++G S +F W D KN
Sbjct: 301 YENS--NPFNFKHISPLKSIEQFEDV--GPSIVMASPSGLQSGLSRQLFDRWCQDRKNAC 356
Query: 332 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+ GTLA+ + + PK V + VPL
Sbjct: 357 VIPGYVVEGTLAKTILNE--PKEVALVSGLVVPL 388
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 174/353 (49%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALP+ + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL+ + + T+ VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAAKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTSD 587
LK + Y P ET+ VT++
Sbjct: 423 LKGKIEQEFNIDCYMPANGETVTVTTN 449
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 48/394 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G +++ PL ++ G L DCG + D DPS
Sbjct: 20 GEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPS------ 73
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 74 ----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-ISKG 127
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + Y + ++H + + GI + AGH+LG ++ + G V+Y
Sbjct: 128 SVEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLY 187
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F + I++T+ GG V
Sbjct: 188 TGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRV 247
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I
Sbjct: 248 LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQ 307
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
+E S N F KH++ L + + ++ GP +V+AS + L++G S +F W D KN
Sbjct: 308 YENS--NPFNFKHISPLKSIEQFEDV--GPSIVMASPSGLQSGLSRQLFDRWCQDRKNAC 363
Query: 332 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+ GTLA+ + + PK V + VPL
Sbjct: 364 VIPGYVVEGTLAKTILNE--PKEVALVSGLVVPL 395
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTE----------------PVYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 166/316 (52%), Gaps = 24/316 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQ 101
ST+D +L+SH H+ +LPY M++ VF T P ++ + M DQ
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQ 128
Query: 102 YLSRR----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ + R+ + +YH + + EGI P+ AGH+LG ++ + G ++++ DY
Sbjct: 129 LYDEKDLLAAFDRIE-AVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDY 187
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 216
+R +++HL+ + RP VLIT++ Y +QP ++ + I T+R GG VL+P
Sbjct: 188 SREEDRHLHVAEVPP-KRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMP 246
Query: 217 VDSAGRVLELLLILEDYWAEH--SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D+I K F
Sbjct: 247 VFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIF-- 304
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ N F+ + V L N + D+ GP ++LAS L+ G S + WA D +N +L T
Sbjct: 305 AERNPFIFRFVKSLRNLEKFDDI--GPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLT 362
Query: 335 ERGQFGTLARMLQADP 350
GT+A+ + +P
Sbjct: 363 GYSVEGTMAKQITNEP 378
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 167/340 (49%), Gaps = 36/340 (10%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG +ND D + + + +D V++SH H G LPY
Sbjct: 12 LVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLDHCGCLPYM 71
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ------------------- 115
+ +G P++ T P + + + D + +V R SQ
Sbjct: 72 TEMVGYDGPIYMTHPTKAICPILLED--YRKITVDRKGESQANFFTSQMIKDCMKKVIPV 129
Query: 116 NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174
N H + + + + + + AGH+LG ++ I E V+Y DYN ++HL ++
Sbjct: 130 NLHQTVQVDDELEIKAYYAGHVLGAAMFLIKVGSESVVYTGDYNMTPDRHLGAAWIDK-C 188
Query: 175 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
RP +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +
Sbjct: 189 RPDLLITESTYATTIRDSKRCRERDFLKKVHETIEKGGKVLIPVFALGRAQELCILLETF 248
Query: 234 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
W ++ PIYF T ++ +Y + F+ W I K+F + N F KH+ ++S
Sbjct: 249 WERMNIKAPIYFSTGLTEKANNYYRLFITWTNQKIRKTF--VKRNMFEFKHIKAF-DRSY 305
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+DN GP +V A+ L AG S IF +WA D KN+V+
Sbjct: 306 IDNP--GPMVVFATPGMLHAGLSLQIFKKWAPDSKNMVIM 343
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + + S ID
Sbjct: 4 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ-------------YLS 104
V++SH H GALPY + +G S P++ T P + + + D + S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKVSVEKKGDQNFFTS 123
Query: 105 R------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + V +T Q+ + + I + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSLMVDNE---IEIKAYYAGHVLGAAMFWIRVGAQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECMDRGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ ++S +DN GP +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DRSYIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL+ N+ V+VK + ++ + AD + I ++ H P ++LVHG AE E
Sbjct: 363 ILNGAKRVEFENKQIVEVKMSVEYMSFSAHADAKGIMQLIQHCEPRNVMLVHGEAEKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTS 586
LKQ L+ + Y P ET +++
Sbjct: 423 LKQKILQEFSINCYNPANGETCVIST 448
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 184/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 20 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 73
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 74 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSK 126
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + Y + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 127 VSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 186
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 187 YTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGR 246
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 247 VLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINSMNERIRN 306
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH++ L ++N D GP +V+AS L++G S +F W SD KN
Sbjct: 307 QFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 361
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 362 ACVIPGYVVGGTLAKTIINEP 382
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 162/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 13 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 72
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + + +
Sbjct: 73 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKEVAGHLHQ 132
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN E+HL ++ RP +
Sbjct: 133 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPERHLGAAWIDK-CRPNL 191
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 192 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 251
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 252 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 308
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 309 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 342
>gi|452981499|gb|EME81259.1| hypothetical protein MYCFIDRAFT_140021 [Pseudocercospora fijiensis
CIRAD86]
Length = 938
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 182/409 (44%), Gaps = 81/409 (19%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +P S L+ +DG L+D GW++ FD LQ L K ST+ +LL+H
Sbjct: 5 TPLLGAQTASPASQSLLELDGGVKILVDVGWDETFDTGKLQALEKHVSTLSVILLTHATI 64
Query: 66 LHLGALPYAMKQL-GLS-APVFSTEPVYRLGLLTMYDQYLSRRS---------------- 107
H+GA + K + G + PV++T PV LG D Y S S
Sbjct: 65 EHIGAYAHCCKHVPGFAKVPVYATTPVVNLGRTLAADIYASSPSAAITIPASSIGPLNSN 124
Query: 108 ---------------------VTRLTYSQNYHLSGKGE-----GIVVAPHVAGHLLGGTV 141
+ L YSQ + + + + AGH GGT+
Sbjct: 125 ATPNLLLPAPTAEEVATYFSAIHPLKYSQPHQPLPSPWSPPLGNLTITAYSAGHTPGGTI 184
Query: 142 WKITKDGEDVIYAVDYNRRKEKHLNGT-------------VLESFVRPAVLITDAYNALH 188
W I E ++YA D+N+ +E L+G ++E RP L+ +
Sbjct: 185 WHIQHSLESIVYAADWNQGRENLLSGAAWLGGSGAGGGAEIIEPLRRPTALVCSSRGVEK 244
Query: 189 NQP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 238
PR++R E I +T+ GG VL+P DS+ RVLEL IL W E++
Sbjct: 245 TDVLPRKKRDETLISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENTSGPHADTY 304
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-----RD-----NAFLLKHVTLL 288
N IY + S+ST+ ++S LEWM D+I + E + RD N K V +
Sbjct: 305 RNAKIYMASKSSTSTVRQLQSMLEWMDDTIIQDAERAMNKGQRDDDKAPNLLDWKFVKQI 364
Query: 289 INKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
+++ D A P ++LAS AS+E G+S + ++D +NLV+ TE
Sbjct: 365 ERQTQFDRALRRRSPCIMLASDASMEWGYSRQALEKLSADPRNLVVLTE 413
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 140/354 (39%), Gaps = 102/354 (28%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSA--------- 498
MFPF + DD+G++I P+DY+ +E D+D M G G+ G
Sbjct: 572 MFPFVSRRPKHDDYGDIIKPEDYLRAEERDDVDGVDMRDGAKQGEAAVGQKRKWDDVANT 631
Query: 499 ----------------------------SLILDA--KPSKVVSNELTVQVKCLLIFIDYE 528
+LI A +P K+V E ++ ++ + ID+
Sbjct: 632 ADKKGAKKPKQEKPPKPAKVEREPDDIDALIARATGRPQKLVFVERSLTLQLRIAHIDFS 691
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC------PHVYTPQIEETI 582
G + R ++ ++ + P KL+L+ G T+ L C + + V P I ET+
Sbjct: 692 GLHEKRDLQMLIPLIRPRKLILISGDTSETQALADECRQLLAEGETKSADVLAPVIGETV 751
Query: 583 DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI----AWVDAEVGKT--------------- 623
D + D A+ ++LS +L+ + ++ + + +DAE +T
Sbjct: 752 DASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRLDAEPIETSSPAEEEAARKKQKL 811
Query: 624 -----------ENGMLSL-------LPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 661
E+ +++ LP ++ + V VGDL++ADL+ + + G
Sbjct: 812 AKKKEDDEAEKESKSVAIPAMPVLDLPATSATATQQRVTQPVHVGDLRLADLRRLMQASG 871
Query: 662 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE---GPLCEDYYKIR 711
EF G G L V +RK S T +I +E G L + Y+ +
Sbjct: 872 HTAEFRGEGTLLIDSTVVVRK----------SATGRIEVETHQGGLSQPAYRTK 915
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 79 ----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 132
Query: 107 SVTRLTYSQN-------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + Y +N +H + + GI + AGH+LG ++ + G ++Y
Sbjct: 133 SVEDMLYDENDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 192
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL L F +I Y +QP + + F + I T+ GG V
Sbjct: 193 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTVSQGGRV 252
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M + I
Sbjct: 253 LIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQ 312
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS L++G S +F +W +D KN
Sbjct: 313 FAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNA 367
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 368 CVIPGYVVEGTLAKTIINEP 387
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG + F D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|134083194|emb|CAK42833.1| unnamed protein product [Aspergillus niger]
Length = 865
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 166/379 (43%), Gaps = 70/379 (18%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------------RSVTR-------L 111
++T PV LG + D Y S + R L
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKATEATHAGRILLQPPTAEEIARYFSLIHPL 146
Query: 112 TYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
YSQ + G+ + + AGH +GGT+W I E ++YAVD+N+ +E +
Sbjct: 147 KYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVVA 206
Query: 167 GT------------VLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGG 211
G V+E +P L+ P R++R ++ D I T+ GG
Sbjct: 207 GAAWFGGSGASGTEVIEQLRKPTALVCSTRGGERFALPGGRKKRDDLLLDMIRSTIAKGG 266
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLE 262
VL+P D++ RVLEL LE W + + +Y +++T+ +S LE
Sbjct: 267 TVLIPTDTSARVLELAYALEHAWRDAAGSGQGDDVLKGAGLYLAGRKANTTMRLARSMLE 326
Query: 263 WMGDSITKSFETSRDNA----FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFS 316
WM ++I + FE + + F KH+ +L K L+ + PK++LAS SL+ GF+
Sbjct: 327 WMDENIVREFEAAEEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSLDWGFA 386
Query: 317 HDIFVEWASDVKNLVLFTE 335
D A NL+L TE
Sbjct: 387 KDSLRLVAEGANNLLLLTE 405
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 80/303 (26%)
Query: 450 MFPFYENNSEWDDFGEVINPDDY-----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP+ + D+FGE I P+D + +D ++D A +G+ EG
Sbjct: 528 MFPYVAPRKKGDEFGEFIRPEDTADELSLAEDGEVDAAVSSEDEVEGQSFEG-------- 579
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K V + T+ + L ++D+ G D RS++ ++ + P KL+LV G + T L
Sbjct: 580 -PAKAVYEKATLTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATE 638
Query: 565 CLKHVCPH------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
C K + ++TP E +D + D A+ V+LS L+ + ++ +
Sbjct: 639 CQKLLAAKSGMDVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLG 698
Query: 613 IAWVDAEVGKTENGML-----------------------SLLPISTPAPPH--------- 640
+ + A++ E +L ++T APP
Sbjct: 699 VVTLTAQLRGPEQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKS 758
Query: 641 ---------------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVT 678
+ + VGDL++ADL+ + G EF G G L V
Sbjct: 759 EVYPLLDVLPVNMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVA 818
Query: 679 IRK 681
+RK
Sbjct: 819 VRK 821
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 75 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSK 127
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + Y + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 128 VSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 187
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 188 YTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGR 247
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 248 VLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRN 307
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH++ L ++N D GP +V+AS + L++G S +F W SD KN
Sbjct: 308 QFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKN 362
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 363 ACVIPGYVVEGTLAKTIINEP 383
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKNYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 147 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 205
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 206 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 266 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 322
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 323 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST---EPVYRLGLLTMY--------DQYL 103
ID +L+SH H G LP+ +++ G F T + +YR LL+ Y +Q L
Sbjct: 52 IDLLLVSHFHLDHAGGLPWFLEKTGFKGRCFMTHASKAIYRW-LLSDYVKVSNIATEQQL 110
Query: 104 SRRSVTRLTYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
+ S + + N+H + GI + AGH+LG ++ I G V+Y D++R
Sbjct: 111 YQDSDIEASMDKIETVNFHQETEVNGIKFCAYTAGHVLGAAMFMIEIAGVKVLYTGDFSR 170
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVD 218
+++HL + + V+P VLIT++ H PR++RE F IS + GG L+PV
Sbjct: 171 EEDRHLMAAEIPN-VKPDVLITESTYGTHIHEPREEREGRFTSLISDIVNRGGRCLIPVF 229
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+ GR ELLLIL++YW++H + PIY+ + ++ + ++++ M D I + T
Sbjct: 230 ALGRAQELLLILDEYWSQHPELQDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQINT-- 287
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N +
Sbjct: 288 NNPFVFKHISNLKSMEHFDDI--GPSVVMASPGMMQSGLSRELFENWCTDKRNGCIIAGY 345
Query: 337 GQFGTLARMLQADP 350
GTLA+ + ++P
Sbjct: 346 CVEGTLAKHILSEP 359
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 9 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 68
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 69 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 128
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 129 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 187
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 188 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 247
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 248 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 304
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 305 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 338
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 147 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 205
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 206 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 266 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 322
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 323 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 147 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 205
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 206 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 266 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 322
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 323 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 147 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 205
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 206 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 266 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 322
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 323 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 147 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNL 205
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 206 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 265
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 266 NLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 322
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 323 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 140
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 141 SVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 200
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F DAI T+ GG V
Sbjct: 201 TGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 260
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 261 LIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 320
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W +D KN
Sbjct: 321 FAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNT 375
Query: 331 VLFTERGQFGTLARMLQADP 350
+ G+LA+ + +P
Sbjct: 376 CVIPGYAVEGSLAKTIINEP 395
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 179/375 (47%), Gaps = 50/375 (13%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + +S G L DCG + D DPS
Sbjct: 23 VTPL-GAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS---------- 71
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------TM 98
T+D +L++H H +LPY +++ VF +T+ +Y+L L +
Sbjct: 72 TVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSVEDML 131
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+D+ RS+ ++ ++H + + GI + AGH+LG ++ + G V+Y DY+
Sbjct: 132 FDEQDINRSMDKIEVI-DFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 190
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 218
R +++HL F +I Y H+QP + + F D I T+ GG VL+P
Sbjct: 191 REEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAF 250
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+ GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I + ++
Sbjct: 251 ALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI----QNAK 306
Query: 277 DNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
N F KHV+ L S ++ D GP +V+AS L++G S +F W SD KN +
Sbjct: 307 SNPFSFKHVSAL---SSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPG 363
Query: 336 RGQFGTLARMLQADP 350
GTLA+ + +P
Sbjct: 364 YVVEGTLAKTIINEP 378
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 14 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 67
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 68 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSK 120
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + Y + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 121 VSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 180
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 181 YTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGR 240
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 241 VLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRN 300
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH++ L ++N D GP +V+AS + L++G S +F W SD KN
Sbjct: 301 QFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKN 355
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 356 ACVIPGYVVEGTLAKTIINEP 376
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 50/381 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 75 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSK 127
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + Y + ++H + + GI + AGH+LG ++ + G V+
Sbjct: 128 VSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 187
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 188 YTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGR 247
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 248 VLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRN 307
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F S N F KH++ L ++N D GP +V+AS + L++G S +F W SD KN
Sbjct: 308 QFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKN 362
Query: 330 LVLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 363 ACVIPGYVVEGTLAKTIINEP 383
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 18 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 71
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 72 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 125
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 126 SVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 185
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F ++ Y +QP + + F DAI T+ GG V
Sbjct: 186 TGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 245
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 246 LIPAFALGRAQELLLILDEYWSNHPELQKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 305
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W +D KN
Sbjct: 306 FAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNT 360
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 361 CVIPGYVIEGTLAKTIINEP 380
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 175/368 (47%), Gaps = 36/368 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
STID +L+SH H +LPY M++ VF T P +YR L
Sbjct: 69 STIDVLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLRDFVKVTSIGGDAE 128
Query: 97 ----TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
+Y+ S R+ + +YH + GI + AGH+LG +++I G ++
Sbjct: 129 NKDENLYNDEDLVESFDRIE-TIDYHSTIDVNGIKFTAYHAGHVLGAAMFQIEIAGLRIL 187
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 211
+ DY+R ++HLN + +LI ++ PR REM + + GG
Sbjct: 188 FTGDYSRELDRHLNSAEIPPLASD-ILIVESTFGTATHEPRLNREMKLTQLVHSIVSRGG 246
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VL+PV + GR E++LIL++YW H PIY+ + ++ + ++++ M D
Sbjct: 247 RVLMPVFALGRAQEIMLILDEYWNNHHEELGGGQVPIYYASSLAKKCMSVFQTYVNMMND 306
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWAS 325
I K F S+ N F+ K+++ L N LDN D GP ++LAS L++G S D+ W
Sbjct: 307 DIRKKFRDSQTNPFIFKNISYLRN---LDNFEDFGPSVLLASPGMLQSGISRDLLERWCP 363
Query: 326 DVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQTRLK 381
+ KN+VL T GT+A+ L +P ++++ RR + A+ + Q L+
Sbjct: 364 EDKNMVLITGYSVEGTMAKYLMVEPDTIPSINNPEISIPRRCKIEEISFAAHVDFQENLE 423
Query: 382 KEEALKAS 389
E + AS
Sbjct: 424 FIEKINAS 431
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 140
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 141 SVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 200
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F DAI T+ GG V
Sbjct: 201 TGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 260
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 261 LIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 320
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W +D KN
Sbjct: 321 FAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNT 375
Query: 331 VLFTERGQFGTLARMLQADP 350
+ G+LA+ + +P
Sbjct: 376 CVIPGYAVEGSLAKTIINEP 395
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 167/353 (47%), Gaps = 29/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ P +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAXXXAHPCA-MVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 39/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 334
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 335 ERGQFG 340
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWDRMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|408391611|gb|EKJ70983.1| hypothetical protein FPSE_08842 [Fusarium pseudograminearum CS3096]
Length = 963
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 185/424 (43%), Gaps = 96/424 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKVLVDLGWDESFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYS- 114
HL A + K + PV++T PV LG + D Y S + S+T YS
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 115 -------QNYHLSGKG-------------------------------EGIVVAPHVAGHL 136
QN L G+ + + +GH
Sbjct: 126 TQTATTAQNLLLQSPNSEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-- 239
A P R +R E D I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 240 -----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA---------F 280
+ +Y SST+ Y +S LEWM DSI + FE R N F
Sbjct: 306 GGVLKSAKLYLAGRNMSSTMRYARSMLEWMDDSIVQEFEAFAEDQRRVNGANNKKEGGPF 365
Query: 281 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
K++ LL K+++ +NA +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIARLLSQNVENAGTEGRVILASDSSIEWGFSKDLIKGLAQDSRNLVI 425
Query: 333 FTER 336
T++
Sbjct: 426 LTDK 429
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 135/373 (36%), Gaps = 107/373 (28%)
Query: 451 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQA------------------------ 482
FP DDFGE+I P+DY+ K+ED D A
Sbjct: 593 FPLTIRRKRQDDFGELIRPEDYLRAEEKEEDGQDSANVEATDDKLGKKRRWDDVVKSGTG 652
Query: 483 ------AMHIGGDDGKLDEGSASLILD-------------AKPSKVVSNELTVQVKCLLI 523
AM G DG+ + D P K+ TVQ +
Sbjct: 653 ANKRPQAMRAGSHDGEEAGAGDGFVPDELDTVEDVETEEPVGPCKLSYQTETVQANLRIA 712
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------- 569
++D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 713 YVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGVDKSNPDNTGSER 772
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------- 620
VYTP++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 773 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLNEAA 832
Query: 621 ----------GKTE------------------NGMLSLLP---ISTPAPPHKSVLVGDLK 649
KTE +L +LP IS + + VGDL+
Sbjct: 833 AADEDVANKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLR 892
Query: 650 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 708
+ADL+ + S G EF G G L V +RK G + + + +Y
Sbjct: 893 LADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTS-----AGRVEVESVGMPTARRSTFY 947
Query: 709 KIRAYLYSQFYLL 721
++R +Y ++
Sbjct: 948 EVRKMIYDNLAVV 960
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 170/354 (48%), Gaps = 30/354 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTI 55
+S++V PL + LV++ G N + DCG +ND D + + + +
Sbjct: 2 SSIRVIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYL 61
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMY 99
D V++SH H GALPY + +G P++ T P V R G +
Sbjct: 62 DCVIISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVERRGDQNFF 121
Query: 100 DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
+ R +T++ + + + + AGH+LG ++ + V+Y DYN
Sbjct: 122 TSDMIYRCMTKVRCVYIHQTVKVDDELEIQAFYAGHVLGAAMFLVRVGTNSVLYTGDYNM 181
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
++HL G S RP +LIT++ A + ++ RE F + I + AGG VL+PV
Sbjct: 182 TPDRHL-GAAWVSRCRPDLLITESTYATTIRDSKRTREREFLEKIHARVEAGGKVLIPVF 240
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
+ GR EL ++LE YW +++ PIYF ++ +Y K F+ W I ++F + N
Sbjct: 241 ALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETF--VKRN 298
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
F KH+ L + +DN GP +V A+ L AG S IF +WASD +N+V+
Sbjct: 299 MFDFKHIKPL-GQGTVDNP--GPMVVFATPGMLHAGQSLHIFRKWASDERNMVV 349
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 172/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWINVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL +++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDN-ARPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 178/362 (49%), Gaps = 32/362 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAST--IDAV 58
++VTPL + LVS+ G N ++DCG + F+ P +S+ A+T ID V
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISEGAATDHIDCV 63
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYSQ 115
++SH H GALPY + +G + P++ T P + + + D + R+ + SQ
Sbjct: 64 IISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQ 123
Query: 116 NYHLSGKG-------EGIVVAP------HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
K + ++V P + AGH+LG ++ + + ++Y DYN +
Sbjct: 124 MIKDCIKKVIAVTLHQSVMVDPDLEIKAYYAGHVLGAAMFWVRVGSQSIVYTGDYNMTPD 183
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV + G
Sbjct: 184 RHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALG 242
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R EL ++LE YW +L P+YF ++ +Y K F+ W I K+F + N F
Sbjct: 243 RAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQRNMFD 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQ 338
KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F +G
Sbjct: 301 FKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNESNMVIMPGFCVQGT 357
Query: 339 FG 340
G
Sbjct: 358 VG 359
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK+ +
Sbjct: 373 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNIILVHGEFAKMEYLKEKIKQEFGT 432
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 433 NCYNPANGETCIITT 447
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 174/365 (47%), Gaps = 32/365 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
S +D +L+SH H +LPY M++ VF T P +YR L
Sbjct: 60 SKVDILLISHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGNSAT 119
Query: 97 ----TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
+Y S R+ + +YH + GI + AGH+LG +++I G V+
Sbjct: 120 GKDENLYTDEDLAESFDRIE-TIDYHSTVDVGGIKFTAYHAGHVLGAAMFQIEIAGLRVL 178
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
+ DY+R ++HLN + F +++ + ++P + I T+ GG
Sbjct: 179 FTGDYSRELDRHLNSAEIPPFPSDVLIVESTFGTATHEPRINRERKLTQLIHSTVTKGGR 238
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
VLLPV + GR EL+LIL++YW++H+ PIY+ + ++ + ++++ M D
Sbjct: 239 VLLPVFALGRAQELMLILDEYWSQHAEELGGGQVPIYYASNLARKCMSVFQTYVNMMNDD 298
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
I + F S+ N F+ K+++ L N E + GP ++LAS L+ G S ++ W +
Sbjct: 299 IRRKFRDSQTNPFVFKNISYLKNIDEFQDF--GPSVMLASPGMLQNGLSREVLERWCPEG 356
Query: 328 KNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE 383
KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q L+
Sbjct: 357 KNLVLITGYSVEGTMAKFLMLEPDTIPSINNPEITIPRRCQIEEISFAAHVDFQENLEFI 416
Query: 384 EALKA 388
E + A
Sbjct: 417 EKISA 421
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 189/391 (48%), Gaps = 42/391 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWND---------HFDPSLLQPLSKV 51
G ++VTPL G NE S + ++ G + DCG + +FD + P+S
Sbjct: 15 GDKLEVTPL-GAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDE--IDPIS-- 69
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------ 96
ID +L++H H +LPY +++ VF +T+ +Y+L L
Sbjct: 70 ---IDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKVSVDD 126
Query: 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+YD++ R++ ++ ++H + + GI + AGH+LG ++ + G V+Y D
Sbjct: 127 MLYDEHDIARTMEKIEVI-DFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGMRVLYTGD 185
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 216
Y+ +++HL + F +I Y +QP + F D +++T+ GG VL+P
Sbjct: 186 YSCEEDRHLRAAEMPHFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGGKVLIP 245
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
+ GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K FE
Sbjct: 246 AFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNDRIQKQFEV 305
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
S N F KH+ L N D+ GP +V+AS L++G S +F W D KN +
Sbjct: 306 S--NPFDFKHIQPLKNIDGFDDI--GPAVVMASPGGLQSGLSRQLFDIWCQDKKNSCIIP 361
Query: 335 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + + PK V + VPL
Sbjct: 362 GYVVEGTLAKAIMNE--PKEVTLLSGLVVPL 390
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 36/356 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G + P++ T P V R G +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 102 YLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPV 239
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 31/351 (8%)
Query: 8 TPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVL 59
TP +G + S LVS+ G N ++DCG + F D S + ++ +D V+
Sbjct: 125 TPRAGAGQDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVI 184
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYL 103
+SH H GALPY + +G P++ T P V + G + +
Sbjct: 185 ISHFHLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFFTSQM 244
Query: 104 SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
+ + ++ + + + + + AGH+LG +++I E V+Y DYN ++
Sbjct: 245 IKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDR 304
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 222
HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV + GR
Sbjct: 305 HLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGR 363
Query: 223 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 364 AQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEF 421
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 422 KHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 469
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 26/322 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S ID +L+SH H +LPY MK+ VF T P +YR L +T S
Sbjct: 59 SKIDVLLISHFHLDHAASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGTTSS 118
Query: 105 RRSVTRLT-----------YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
+ T + +YH + GI AGH+LG +++I G V++
Sbjct: 119 EKDENLYTDEDLADSFDKIETIDYHSTMDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLF 178
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R ++HLN + +++ + ++P + + I T+ GG V
Sbjct: 179 TGDYSREMDRHLNSAEVPPLPSDVLIVESTFGTATHEPRLNREKKLTQLIHSTVGRGGRV 238
Query: 214 LLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
L+PV + GR EL+LIL++YW++H S PIY+ + ++ + ++++ M D I
Sbjct: 239 LMPVFALGRAQELMLILDEYWSQHADELGSGQVPIYYASNLAKKCMSVYQTYVNMMNDDI 298
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
K F S+ N F+ KH++ L N E + GP ++LAS L+ G S D+ +W + K
Sbjct: 299 RKKFRDSQTNPFIFKHISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCPEDK 356
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N+VL T GT+A+ + +P
Sbjct: 357 NMVLITGYSVEGTMAKYIMLEP 378
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 171/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
+++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 LIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSMGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 140
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G + Y
Sbjct: 141 SVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRIRY 200
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F DAI T+ GG V
Sbjct: 201 TGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 260
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 261 LIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 320
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W +D KN
Sbjct: 321 FAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNT 375
Query: 331 VLFTERGQFGTLARMLQADP 350
+ G+LA+ + +P
Sbjct: 376 CVIPGYAVEGSLAKTIINEP 395
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 173/367 (47%), Gaps = 33/367 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVT 109
S +D +L+SH H +LPY M++ VF T P +YR LL + + S S +
Sbjct: 60 SIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGSQS 118
Query: 110 RLTYSQN------------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
N YH GI AGH+LG +++I G V
Sbjct: 119 SNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRV 178
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + +++ + ++P + + I T+ GG
Sbjct: 179 LFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGG 238
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VL+PV + GR EL+LIL++YW++H S PI++ + ++ + ++++ M D
Sbjct: 239 RVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVNMMND 298
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I K F S+ N F+ K++ + N E + GP ++LAS L+ G S D+ W D
Sbjct: 299 NIRKKFRDSQTNPFIFKNIAYIKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLERWCPD 356
Query: 327 VKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKK 382
KNLVL T GT+A+ +L+ D P +VT+ RR + A+ + Q L+
Sbjct: 357 EKNLVLITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAHVDFQENLEF 416
Query: 383 EEALKAS 389
E + AS
Sbjct: 417 IEQINAS 423
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 162/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 12 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYF 71
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 72 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 131
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +
Sbjct: 132 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDR-CRPNL 190
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + + + GG VL+PV + GR EL ++LE +W
Sbjct: 191 LITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFALGRAQELCILLETFWERM 250
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 251 NLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 307
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 308 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 341
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 174/363 (47%), Gaps = 33/363 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++TPL + LVS+ G N ++DCG + F D S + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G + P++ T P + + + D + R+ + S
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 115 QNYHLSGKG-------EGIVVAPHV------AGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q K + ++V P + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVVAVTLHQSVMVDPELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERG 337
KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F +G
Sbjct: 301 EFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQG 357
Query: 338 QFG 340
G
Sbjct: 358 TVG 360
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEYLKEKIKQEFGV 433
Query: 572 HVYTPQIEETIDVTS 586
Y P ET +T+
Sbjct: 434 SCYNPANGETCVITT 448
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 188/372 (50%), Gaps = 44/372 (11%)
Query: 22 LVSIDGFNFLIDCGWND---------HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALP 72
++ G ++DCG + +FD L++P ID +L+SH H GALP
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPYFD--LIEP-----DEIDLLLISHFHLDHCGALP 88
Query: 73 YAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQN------------- 116
+ +++ VF +T+ +YR LL+ Y + +S S ++ Y+ N
Sbjct: 89 WFLQKTNFQGRVFMTHATKAIYRW-LLSDYVK-VSNISTEQMLYTDNDLENSMDRIETID 146
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
+H+ + G+ + AGH+LG ++ I G ++Y D++R++++HL L S VRP
Sbjct: 147 FHVETEVLGVKFWCYNAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAELPS-VRP 205
Query: 177 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
VLI ++ H R++RE F + + GG L+PV + GR ELLLIL++YWA
Sbjct: 206 DVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWA 265
Query: 236 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
H + PIY+ + ++ + ++++ M D I + S N F+ KH++ L
Sbjct: 266 NHPELHDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQITIS--NPFVFKHISNLRGMDH 323
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + + P+
Sbjct: 324 FDDI--GPSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGYCVEGTLAKHILSQ--PE 379
Query: 354 AVKVTMSRRVPL 365
V +++PL
Sbjct: 380 EVTTMSGQKLPL 391
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 190/384 (49%), Gaps = 34/384 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVLL 60
+++TPL +L+ ++DCG H S L L + T ID +L+
Sbjct: 17 LKITPLGAGQEVGRSCHLLEFKEKKIMLDCGI--HPGISGLAGLPYIDFTEPEKIDLLLV 74
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL--------LTMYDQYLSRR--- 106
+H H G LP+ +++ VF +T+ +YR L ++ DQ +
Sbjct: 75 THFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKVSNISTEDQLYTEADLE 134
Query: 107 -SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
S+ R+ + N+H GI + AGH+LG ++ I G V+Y DY+R +++HL
Sbjct: 135 DSMARIE-TINFHEEKMVGGIKFWCYHAGHVLGAAMFMIQIAGVRVLYTGDYSREEDRHL 193
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 224
+ + VRP VLIT+A H PR++RE F + + + GG L+PV + GR
Sbjct: 194 MAAEIPA-VRPDVLITEATYGTHIHEPREEREARFTNTVQDIVNRGGRCLIPVFALGRAQ 252
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLIL+DYWA H + PIY+ + ++ + +++ M I K S N F
Sbjct: 253 ELLLILDDYWANHPELHDIPIYYASSLAKKCMAVYQTYSNAMNQKIQKQLNIS--NPFQF 310
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
KH++ L D+ GP +V+AS +++G S ++F W +D +N V+ GTL
Sbjct: 311 KHISNLKGMEHFDDV--GPSVVMASPGMMQSGLSRELFESWCNDRRNGVIVAGYCVEGTL 368
Query: 343 ARMLQADPPPKAVKVTMS-RRVPL 365
A+ + ++P V+MS +++PL
Sbjct: 369 AKHILSEPEE---VVSMSGQKIPL 389
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G L DCG + D DPS
Sbjct: 21 GDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 74
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 75 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 128
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 129 SVEDMLFDEQDVIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 188
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F +I Y +QP + + F DAI T+ GG V
Sbjct: 189 TGDYSREEDRHLKAAEVPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 248
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 249 LIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 308
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W +D KN
Sbjct: 309 FAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDKKNT 363
Query: 331 VLFTERGQFGTLARMLQADP 350
+ G+L + + +P
Sbjct: 364 CVIPGFAVEGSLVKTIINEP 383
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 164/336 (48%), Gaps = 30/336 (8%)
Query: 22 LVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG +ND F D S + ++ +D V++SH H GALPY
Sbjct: 21 LVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 80
Query: 75 MKQLGLSAPVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ +G P++ T P V + G + + + + ++ +
Sbjct: 81 SEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQ 140
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH+LG +++I E +Y DYN ++HL ++ RP +
Sbjct: 141 TVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTPDRHLGAAWIDK-CRPNL 199
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 200 LITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM 259
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 260 NLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP 316
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 317 --GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 178/391 (45%), Gaps = 46/391 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+ V PL + LV+I+G + DCG + F D S + ID
Sbjct: 1 MNVVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-----------------GLLTMYD 100
+++SH H GALPY + G S P++ T P + + + D
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKIVGGKGDSIFSYQD 120
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ V ++ ++ Y E + P+ AGH+LG ++ ++ + V+Y DY+
Sbjct: 121 ISNCMKKVVTISMNETYK---HDENFYITPYYAGHVLGAAMFHVSVGDQSVVYTGDYSTT 177
Query: 161 KEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDS 219
+KHL ++ +RP +LIT++ Y ++ R + F A+S + GG VL+P+ +
Sbjct: 178 PDKHLGPASIKC-IRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIPIFA 236
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT-KSFETSRDN 278
GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE N
Sbjct: 237 LGRAQELCLLLDGYWERTGLEIPVYFSSGLTEKANEIYKKFIGYTNETVKRKIFER---N 293
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F KH+ + +DN GP ++ AS L +G S IF EW D KNLV+
Sbjct: 294 VFEYKHIKPF-QRYYMDNK--GPMVLFASPGMLHSGMSLRIFKEWCEDEKNLVIIPGYCV 350
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
GT+ + + ++R+ ++GEE
Sbjct: 351 RGTIGEKI----------LNGAKRLEILGEE 371
>gi|46138561|ref|XP_390971.1| hypothetical protein FG10795.1 [Gibberella zeae PH-1]
Length = 964
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 185/425 (43%), Gaps = 97/425 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTR----- 110
HL A + K + PV++T PV LG + D Y S + S+T
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 111 -----------------------------LTYSQNYHLSGKG-----EGIVVAPHVAGHL 136
L YSQ + G+ + + +GH
Sbjct: 126 TQTATTARNLLLQSPNSEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-- 239
A P R +R E D I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 240 -----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA---------- 279
+ +Y SST+ Y +S LEWM DSI + FE R N
Sbjct: 306 GGVLKSAKLYLAGRNMSSTMRYARSMLEWMDDSIVQEFEAFAEDQRRVNGANNKKEGGGP 365
Query: 280 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F K++ LL K+++ +NA +++LAS +S+E GFS D+ A D +NLV
Sbjct: 366 FDFKYLRLLERKAQIARLLSQNVENAGTEGRVILASDSSIEWGFSKDLIKGLAQDSRNLV 425
Query: 332 LFTER 336
+ T++
Sbjct: 426 ILTDK 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 135/373 (36%), Gaps = 107/373 (28%)
Query: 451 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQA------------------------ 482
FP DDFGE+I P+DY+ K+ED D A
Sbjct: 594 FPLTIRRKRQDDFGELIRPEDYLRAEEKEEDGQDSANVEMTDDKLGKKRRWDDVVKSGTG 653
Query: 483 ------AMHIGGDDGKLDEGSASLILD-------------AKPSKVVSNELTVQVKCLLI 523
AM G DG+ + D P K+ TVQ +
Sbjct: 654 ANKRPQAMRAGSHDGEEAGAGDGFVPDELDTVEDVETEEPVGPCKLSYQTETVQANLRIA 713
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------- 569
++D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 714 YVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGVDKSNPDNTGSER 773
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------- 620
VYTP++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 774 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLNEAA 833
Query: 621 ----------GKTE------------------NGMLSLLP---ISTPAPPHKSVLVGDLK 649
KTE +L +LP IS + + VGDL+
Sbjct: 834 AADEDVANKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLR 893
Query: 650 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 708
+ADL+ + S G EF G G L V +RK G + + + +Y
Sbjct: 894 LADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKT-----SAGRVEVESVGMPTARRSTFY 948
Query: 709 KIRAYLYSQFYLL 721
++R +Y ++
Sbjct: 949 EVRKMIYDNLAVV 961
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 189/395 (47%), Gaps = 50/395 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 22 GDQLTLTPL-GAGNEVGRSCVYMSFKGKTVLFDCGIHLAYSGMAALPYFDEIDPS----- 75
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +++L LLT Y + +S+
Sbjct: 76 -----TIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKL-LLTNYVK-VSK 128
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + + + ++H + GI + AGH+LG ++ + G V+
Sbjct: 129 VSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 188
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 189 YTGDYSREEDRHLCAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGR 248
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 249 VLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKKCMTVYQTYILSMNERIRN 308
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH++ L N E D + GP +V+AS L++G S +F W SD KN
Sbjct: 309 QFANS--NPFKFKHISPL-NSIE-DFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNA 364
Query: 331 VLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+ GTLA+ + + PK V++ PL
Sbjct: 365 CVIPGYVVEGTLAKTIINE--PKEVQLMNGLTAPL 397
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 177/365 (48%), Gaps = 30/365 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------T 97
S++D +L+SH H +LPY M++ VF T P +YR L T
Sbjct: 59 SSVDILLISHFHLDHAASLPYVMQRTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGINST 118
Query: 98 MYDQYLSRRSVTRLTYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
D L ++ + +YH + GI + AGH+LG +++I G V++
Sbjct: 119 GEDDNLYTDEDLVESFDKIETIDYHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAGLRVLF 178
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R ++HLN + +++ + ++P + + I T+ GG V
Sbjct: 179 TGDYSRETDRHLNSAEVPPLSSDILIVESTFGTATHEPRLSREKKLTQLIHTTVSQGGRV 238
Query: 214 LLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
L+PV + GR EL+LIL+++W++H+ PI++ + ++ + ++++ M D I
Sbjct: 239 LMPVFALGRAQELMLILDEFWSQHADELGGGQVPIFYASDLARKCMSVFQTYVNMMNDDI 298
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ W D K
Sbjct: 299 RKKFRDSQTNPFIFKNISYLKNLEEFQDF--GPSVMLASPGMLQSGISRDLLERWCPDDK 356
Query: 329 NLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKKEE 384
NLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q L+ E
Sbjct: 357 NLVLITGYSVEGTMAKFIMLEPDTIPSVNNPEITIPRRCQVEEISFAAHVDFQENLEFIE 416
Query: 385 ALKAS 389
+ A+
Sbjct: 417 KINAN 421
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 38/387 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG +ND D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD---QYLSRRSVTRLTYS 114
+++SH H GALPY + +G + PV+ T P + + + D + R+ T S
Sbjct: 64 LIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+ G
Sbjct: 301 DFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYCVAG 357
Query: 341 TL-------ARMLQADPPPKAVKVTMS 360
T+ AR ++ D + V+V MS
Sbjct: 358 TVGHKILSGARKVELD-NRQVVEVKMS 383
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + N V+VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEASKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQL 595
L++ L+ Y P ET+ + T D+ V L
Sbjct: 423 LRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSL 458
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 164/344 (47%), Gaps = 34/344 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
STID +L+SH H +LPY M++ VF T P +YR L
Sbjct: 64 STIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPG 123
Query: 97 ------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
+Y S R+ + +YH + + GI AGH+LG +++I G
Sbjct: 124 QDSSNDNLYSDEDLAESFDRIE-TIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVR 182
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
V++ DY+R ++HLN + +++ + ++P + + I + G
Sbjct: 183 VLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKG 242
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW H PI++ + ++ + ++++ M
Sbjct: 243 GRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMN 302
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F+ S+ N F+ K+++ L N E ++ GP ++LAS L+ G S DI +W
Sbjct: 303 DDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLSRDILEKWCP 360
Query: 326 DVKNLVLFTERGQFGTLARML----QADPPPKAVKVTMSRRVPL 365
+ KNLVL T GT+A+ L +A P ++T+ RR +
Sbjct: 361 EEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQV 404
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 30/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
S ID +L+SH H +LPY M++ VF T P +YR L
Sbjct: 59 SKIDVLLISHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGVSSG 118
Query: 97 ----TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
+Y S R+ + ++H + GI + AGH+LG +++I G ++
Sbjct: 119 GKDDNLYTDEDLAESFDRIE-TIDFHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAGVRIL 177
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
+ DY+R ++HLN + + ++ + ++P + I T+ GG
Sbjct: 178 FTGDYSRELDRHLNSAEVPTLPSDVHIVESTFGTATHEPRVNRERKLTQLIHSTVSRGGR 237
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
VLLPV + GR E++LIL++YW +HS PIY+ + ++ + ++++ M D
Sbjct: 238 VLLPVFALGRAQEIMLILDEYWTQHSDELGGGQVPIYYASNLAKKCMSVFQTYVNMMNDD 297
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASD 326
I K F S+ N F+ K+++ L N +D+ D GP ++LAS L++G S D+ +W +
Sbjct: 298 IRKKFRDSQTNPFVFKNISYLRN---IDDFQDFGPSVMLASPGMLQSGLSRDVLEKWCPE 354
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KNLVL T GT+A+ L +P
Sbjct: 355 DKNLVLITGYSVEGTMAKFLMLEP 378
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 189/391 (48%), Gaps = 42/391 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWND---------HFDPSLLQPLSKV 51
G ++VTPL G NE S + ++ G + DCG + +FD + P+S
Sbjct: 15 GDKLEVTPL-GAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDE--IDPIS-- 69
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------ 96
ID +L++H H +LPY +++ VF +T+ +Y+L L
Sbjct: 70 ---IDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKVSVDD 126
Query: 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+YD++ R++ ++ ++H + + GI + AGH+LG ++ + G V+Y D
Sbjct: 127 MLYDEHDIARTMEKIEVI-DFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGMRVLYTGD 185
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 216
Y+ +++HL + F +I Y +QP + F D +++T+ GG VL+P
Sbjct: 186 YSCEEDRHLRAAEMPRFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGGKVLIP 245
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
+ GR ELLLIL++YW H + PIY+ + ++ + ++++ M + I K FE
Sbjct: 246 AFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNERIQKQFEV 305
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
S N F KH+ L N E D+ GP +V+AS L++G S +F W D KN +
Sbjct: 306 S--NPFDFKHIQPLKNIDEFDDI--GPAVVMASPGGLQSGLSRQLFDIWCQDKKNSCVIP 361
Query: 335 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GT A+ + + PK V + VPL
Sbjct: 362 GYVVEGTPAKAIMNE--PKEVTLLSGLVVPL 390
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 169/365 (46%), Gaps = 39/365 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LV+I G + DCG + F+ P +SK S ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-----------------GLLTMYD 100
V++SH H GALPY + G + PV+ T P + + T D
Sbjct: 61 VVISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEVCPVLLDDFRKIVEGKGDSIFTYQD 120
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ VT + ++ Y E + P+ AGH+LG ++ + + V+Y DY+
Sbjct: 121 ILNCMKKVTTINMNETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTT 177
Query: 161 KEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDS 219
+KHL ++ VRP +LIT++ Y ++ R + F A+S + GG VL+P+ +
Sbjct: 178 PDKHLGPASIKC-VRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIPIFA 236
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETSRDN 278
GR EL L+L+ YW L P+YF + ++ + K F+ + +++ + FE N
Sbjct: 237 LGRAQELCLLLDGYWERTGLKIPVYFSSGLTEKANEIYKKFISYTNETVKRKIFER---N 293
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTE 335
F KH+ K ++N GP ++ AS L +G S +F EW D KNLV+ +
Sbjct: 294 VFEYKHIKPF-QKYYMENK--GPMVLFASPGMLHSGMSLRMFKEWCEDEKNLVIIPGYCV 350
Query: 336 RGQFG 340
RG G
Sbjct: 351 RGTIG 355
>gi|342882935|gb|EGU83499.1| hypothetical protein FOXB_05909 [Fusarium oxysporum Fo5176]
Length = 950
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 182/424 (42%), Gaps = 96/424 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++P S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSPASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYS- 114
HL A + K + PV++T PV LG + D Y S + S+T YS
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 115 -------QNYHLSG-------------------------------KGEGIVVAPHVAGHL 136
QN L G+ + + +GH
Sbjct: 126 TQTATTAQNLLLQSPTNEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN- 240
A R +R E D I + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 GADRTAQTGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASD 305
Query: 241 ------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 280
+Y SST+ Y +S LEWM +SI + FE F
Sbjct: 306 AGVLKTAKLYLAGRNMSSTMRYARSMLEWMDESIVQEFEAFAEGQRKVNGANDKKEGGPF 365
Query: 281 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
K++ LL K+++ DN +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIARLLSQNPDNVSTEGRVILASDSSIEWGFSKDLIKGLARDSRNLVI 425
Query: 333 FTER 336
T++
Sbjct: 426 LTDK 429
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 131/360 (36%), Gaps = 94/360 (26%)
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDEDMD------------------------------ 480
FP DDFGE+I P+DY+ +E +
Sbjct: 593 FPIAIRRKRQDDFGELIRPEDYLRAEEKEEEGQDNTNMEAADDKLGKKRRWDDFAKTGTG 652
Query: 481 ---QAAMHIGGDDGK-----LDEGSASLILDA----------KPSKVVSNELTVQVKCLL 522
Q M G DG+ +G LD+ P K+ TVQ +
Sbjct: 653 AKRQQNMRAGSADGEEAGAGAHDGFVPDELDSVEDIETEEPTGPCKLTYQTETVQTNMRI 712
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------------- 569
F+D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 713 AFVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGGDNGNADAGSER 772
Query: 570 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL--------------GDYEIAW 615
VYTP++ +D + D A+ V+L++ L+ + ++ L +
Sbjct: 773 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNLLATHLNEAAAADEDAANKRQK 832
Query: 616 VDAEVGKTENGMLSLLPISTPA-------------PPHKSVLVGDLKMADLKPFLSSKGI 662
+ T M + +P +TP + + VGDL++ADL+ + S G
Sbjct: 833 TEETSSTTLTNMAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLRLADLRRAMQSAGH 892
Query: 663 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
EF G G L V +RK G + + + +Y++R +Y ++
Sbjct: 893 AAEFRGEGTLVVDGTVAVRKTS-----AGRVEVESVGMPTARRSTFYEVRKMIYDNLAVV 947
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 96 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 149
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL LL+ Y + +S+
Sbjct: 150 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKV 203
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 204 SVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 263
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL + F ++ Y +QP + + F DAI T+ GG V
Sbjct: 264 TGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRV 323
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M + I
Sbjct: 324 LIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQ 383
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS +L++G S +F +W +D KN
Sbjct: 384 FAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGTLQSGLSRQLFDKWCTDKKNT 438
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTL++ + +P
Sbjct: 439 CVIPGFVIEGTLSKTIINEP 458
>gi|323303882|gb|EGA57663.1| Cft2p [Saccharomyces cerevisiae FostersB]
Length = 859
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 189/829 (22%), Positives = 325/829 (39%), Gaps = 179/829 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 322
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 323 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 380
AS + ++ E+G+ + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILEIVEQGERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 381 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 427
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 428 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 459
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAPSKHKMFPFNPAKIK 545
Query: 460 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 479
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMTDPVS 605
Query: 480 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAEXFDNLDYLKIDKTLSKRTVSTVNVQLKCSVVILNLQSLVD 665
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 592
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 593 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPP 639
+ + L + + ++++ D Y +A V + K L L P+ +
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRS 784
Query: 640 HKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 785 HKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|302899216|ref|XP_003048005.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728937|gb|EEU42292.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 958
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 180/424 (42%), Gaps = 96/424 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+P S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSESPASQSLLELDGGVKVLVDLGWDESFDAGKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K + PV++T PV LG + D Y S
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYNSSPAAATTIPQSSLSETAFSF 125
Query: 105 ----------------RRSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGHL 136
+ R L YSQ + G+ + + +GH
Sbjct: 126 AQTATTAQNLLLQSPTNEDIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN- 240
A R +R E D I + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 GADRTAQAGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 241 ------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 280
+Y SST+ Y +S LEWM D+I + FE F
Sbjct: 306 DGVLKAAKLYLAGRNMSSTMRYARSMLEWMDDTIVQEFEAFAEGQRKVNGAGDKKEGGPF 365
Query: 281 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
K++ LL K+++ +N +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIVRLLSRGFENVETEGRVILASDSSIEWGFSKDLIKGLARDSRNLVI 425
Query: 333 FTER 336
T++
Sbjct: 426 LTDK 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 136/368 (36%), Gaps = 102/368 (27%)
Query: 451 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQAAMHIGGD----------------- 489
FP DDFGE+I P+DY+ K+ED D A M D
Sbjct: 593 FPIAIRRKRHDDFGELIRPEDYLRAEEKEEDGQDNANMEAADDKLGKKRRWDDVAKNGVG 652
Query: 490 -DGKLDEGSASLILDAKPSK---VVSNEL----------------------TVQVKCLLI 523
+ + A + DA+P V +EL T+ +
Sbjct: 653 ANKRQQTTRAGSVDDAEPGAGDGFVPDELDNVEDIEPEEPTGPCKLSYQTETITANLRIA 712
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------C 570
++D+ G D RS+ ++ + P KL+LV G E T L + C + +
Sbjct: 713 YVDFSGLHDKRSLNMLIPLIKPRKLILVGGGREETLALAEDCRRALGGDAAAGDGSSERT 772
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV----------DAEV 620
VYTP+I +D + D A+ V+L++ L+ + ++ + I + DA
Sbjct: 773 VDVYTPEIGTLVDASVDTNAWVVKLADSLVKKIKWQNVRGLGIVTITGQLLATKLDDAPA 832
Query: 621 G---------KTENGMLSLLPISTPAP-PHKSVL----------------VGDLKMADLK 654
G KTE + L +P P VL VGDL++ADL+
Sbjct: 833 GDQDAANKRQKTEESSTTALSTVVASPMPTLDVLPANLVSAVRSAAQPLHVGDLRLADLR 892
Query: 655 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 713
+ S G EF G G L V +RK G + + + +Y++R
Sbjct: 893 RAMQSAGHTAEFRGEGTLVVDGTVAVRKTA-----AGRVEVESVGMPTARRSTFYEVRKV 947
Query: 714 LYSQFYLL 721
+Y ++
Sbjct: 948 IYDNLAVV 955
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 169/367 (46%), Gaps = 37/367 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL--------SKVASTID 56
+++ PL + +V++ G N ++DCG + F+ P + ID
Sbjct: 4 IKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHID 63
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYD 100
V++SH H GALPY + G P++ T P V R G +D
Sbjct: 64 CVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVDRKGETNFFD 123
Query: 101 QYLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ + + V + Q H+ + E + + AGH+LG ++ + + V+Y DY
Sbjct: 124 SKMIKDCMKKVIPVNLHQTIHVDDQLE---IKAYYAGHVLGAAMFLLKVGTDSVLYTGDY 180
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
N ++HL ++ RP VLIT++ A + ++ RE F + + + GG VL+P
Sbjct: 181 NMTPDRHLGAAWVDK-CRPDVLITESTYATTIRDSKRCRERDFLKKVHERVEDGGKVLIP 239
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
V + GR EL ++LE YW +L PIYF +++ +Y K F+ W I +F
Sbjct: 240 VFALGRAQELCILLESYWDRMNLKVPIYFSAGLTNKATEYYKLFITWTNQKIKDTF--VE 297
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F KH+ N+S +DN GP +V A+ L G S +IF W ++ KN+++
Sbjct: 298 RNMFDFKHIKEF-NRSYIDNP--GPMVVFATPGMLHGGLSLEIFKRWCTNEKNMIIMPGY 354
Query: 337 GQFGTLA 343
GT+
Sbjct: 355 CVAGTVG 361
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 30/325 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
S ++ +L+SH H +LPY M++ VF T P +YR L
Sbjct: 61 SQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDSA 120
Query: 97 ------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
+Y S R+ + +YH + GI + AGH+LG ++++ G
Sbjct: 121 GGVSDENLYTDEDLAESFDRIE-TVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLR 179
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
+++ DY+R ++HLN + + +++ + ++P + + I T+ G
Sbjct: 180 ILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKG 239
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++ M
Sbjct: 240 GRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMN 299
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 300 DKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCP 357
Query: 326 DVKNLVLFTERGQFGTLARMLQADP 350
D KNLVL T GT+A+ L +P
Sbjct: 358 DEKNLVLITGYSVEGTMAKFLMLEP 382
>gi|190346294|gb|EDK38344.2| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 236/556 (42%), Gaps = 128/556 (23%)
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL----- 165
L YSQ LS +++ P+ AGH LGGT W ITK E VIYA +N K+ L
Sbjct: 19 LKYSQT--LSLFENKMIITPYNAGHTLGGTFWCITKRLEKVIYAPSWNHSKDSFLSSSSF 76
Query: 166 ----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
G L +RP VLIT+ + N P +++ E F + TL GG V+LP +G
Sbjct: 77 LSASTGNPLSQLMRPTVLITNT-DLGSNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSG 135
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 273
R LELL +++ + + P+YFL+Y + ++Y S LEWM S+ K +E
Sbjct: 136 RFLELLHLVDHHLQSQPI--PVYFLSYSGTKVLNYASSLLEWMSTSLVKEWEAASSASMN 193
Query: 274 -TSRDN-AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNL 330
T+++N F V LL + EL GPK+VL + + +G S ++ SD KN
Sbjct: 194 STNKNNFPFDPSKVDLLSDPKELIQL-SGPKIVLCAGIDMNSGDVSFEVLKYLCSDQKNT 252
Query: 331 VLFTERGQFGT--------------------------LARMLQADPPPKAVKVTMSRRVP 364
VL TE+ FG LA + P + +SR P
Sbjct: 253 VLLTEKTHFGADFSINAQLFTDWVRLSREKYGNAEDGLAIGYEGTIPLRG----LSREDP 308
Query: 365 LVGEELIAYEE-----------EQTRLKKEEA-LKASLVKEEESKASLGPDNNLSGD--- 409
L G EL +++E EQ R +K + L A ++EE+S + G D S +
Sbjct: 309 LSGSELTSFQERINHQRKKKLFEQVRDRKNQNLLNADNLEEEDSSSDDGEDAESSDEEMP 368
Query: 410 ----------PMVIDAN-NANASADVVEPHGGRYR-------DILIDGFVPPSTSVAPMF 451
P ID N NA + D + D+ I + P ++ P
Sbjct: 369 TTTETEAGAMPGAIDTNVNAIVTQDAFVADQVKQTLDDELPLDVKITHKLKPRQAMFPYI 428
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDEDMDQA--------------AMHIGGDDGKLD-EG 496
P ++ ++DD+GEVI+ DY + ED+ A + G DD + G
Sbjct: 429 PPHKR--KFDDYGEVIDIKDY-QRAEDLTNAKLISDSKRKFEQEDKLKWGNDDDRRSGRG 485
Query: 497 SASLILDAKPSKVVSNEL---------------------TVQVKCLLIFIDYEGRADGRS 535
P + ++N++ ++ +C L F+D G D RS
Sbjct: 486 GGIQTNRLTPQETLNNQILQKNLHTLFQPRKRVIVTKTQDLKFRCSLSFVDLAGLVDLRS 545
Query: 536 IKTILSHVAPLKLVLV 551
+ I+S + P LVL+
Sbjct: 546 LSLIVSSLKPYNLVLL 561
>gi|349579839|dbj|GAA25000.1| K7_Cft2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 859
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 189/829 (22%), Positives = 325/829 (39%), Gaps = 179/829 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEVSFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 322
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 323 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 380
AS + ++ E+G+ + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILEIVEQGERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 381 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 427
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 428 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 459
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAPSKHKMFPFNPAKIK 545
Query: 460 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 479
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMTDPVS 605
Query: 480 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTVSTVNVQLKCSVVILNLQSLVD 665
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 592
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 593 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPP 639
+ + L + + ++++ D Y +A V + K L L P+ +
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRS 784
Query: 640 HKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 785 HKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 30/325 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
S ++ +L+SH H +LPY M++ VF T P +YR L
Sbjct: 61 SQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNA 120
Query: 97 ------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
+Y S R+ + +YH + GI + AGH+LG ++++ G
Sbjct: 121 GGVSDENLYTDEDLAESFDRIE-TVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLR 179
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
+++ DY+R ++HLN + + +++ + ++P + + I T+ G
Sbjct: 180 ILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKG 239
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++ M
Sbjct: 240 GRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMN 299
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 300 DKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCP 357
Query: 326 DVKNLVLFTERGQFGTLARMLQADP 350
D KNLVL T GT+A+ L +P
Sbjct: 358 DEKNLVLITGYSVEGTMAKFLMLEP 382
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 183/387 (47%), Gaps = 38/387 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG +ND D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD---QYLSRRSVTRLTYS 114
+++ H H GALPY + +G + PV+ T P + + + D + R+ T S
Sbjct: 64 LIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDEGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+ G
Sbjct: 301 DFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYCVAG 357
Query: 341 TL-------ARMLQADPPPKAVKVTMS 360
T+ AR ++ D + V+V MS
Sbjct: 358 TVGHKILSGARKVELD-NRQVVEVKMS 383
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + N V+VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEASKMEL 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQL 595
L++ L+ Y P ET+ + T D+ V L
Sbjct: 423 LRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSL 458
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 163/315 (51%), Gaps = 22/315 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQ 101
ST+D +L++H H ALPY M++ VF T P R+ + + DQ
Sbjct: 40 STVDILLITHFHLDHAAALPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVRVSNVGVEDQ 99
Query: 102 YLSRRSVT---RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + +YH + + EG+ P AGH+LG ++ I G ++Y D++
Sbjct: 100 LYDEKDLAAAFERMEAVDYHSTIEVEGVKFTPFHAGHVLGACMYFIEIAGVKLLYTGDFS 159
Query: 159 RRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
R +++HLN + +P +LI+++ Y +QP + + + T+R GG VL+PV
Sbjct: 160 REEDRHLNIAEVPP-QKPNILISESTYGTASHQPRLDKEARLLNLVHTTVRNGGRVLMPV 218
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YW H+ + PIY+ + ++ + ++++ M D I K+F +
Sbjct: 219 FALGRAQELLLILDEYWHSHAELRSVPIYYASSLARKCMAVYQTYINMMNDKIRKAF--A 276
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
N F+ +++ L + + D+ GP ++LAS L+ G S + WA D +N +L T
Sbjct: 277 ERNPFIFRYIKSLRSIDKFDDI--GPSVILASPGMLQNGVSRTLLERWAPDARNTLLLTG 334
Query: 336 RGQFGTLARMLQADP 350
GT+A+++ +P
Sbjct: 335 YSVEGTMAKLIANEP 349
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 165/342 (48%), Gaps = 30/342 (8%)
Query: 31 LIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG +ND D + K+ +D VL+SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYSQ------------NYHLSGK-GEGIV 127
++ T P + + + D + R+ T SQ N H S K + +
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKVVPINLHQSIKVDDELE 120
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG ++ + E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 121 IKAYYAGHVLGAVMFHMRVGTESVVYTGDYNMTPDRHLGSAWIDK-CRPDILITESTYAT 179
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE YW +L PIYF
Sbjct: 180 TIRDSKRCRERDFLKKVHETMEKGGKVLIPVFALGRAQELCILLETYWERMNLKAPIYFS 239
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I +F + N F +H+ ++S +DN GP +V A
Sbjct: 240 TGLTEKANHYYKLFITWTNQKIKNTF--VQRNMFEFEHIKPF-DRSYIDNP--GPMVVFA 294
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 348
+ L AG S IF +WAS+ N+V+ GT+ + A
Sbjct: 295 TPGMLHAGLSLQIFKKWASNENNMVVIPGYCVAGTVGHKVLA 336
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 188/395 (47%), Gaps = 50/395 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 22 GDQLTLTPL-GAGNEVGRSCVYMSFKGKTVLFDCGIHPAYSGMAALPYFDEIDPS----- 75
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 76 -----TIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKL-LLTDYVK-VSK 128
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
SV + + + ++H + GI + AGH+LG ++ + G V+
Sbjct: 129 VSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 188
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 189 YTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTISLGGR 248
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N P+Y+ + ++ + ++++ M + I
Sbjct: 249 VLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYILSMNERIRN 308
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH++ L + + + GP +V+A+ L++G S +F W SD KN
Sbjct: 309 QFADS--NPFKFKHISPLNSIEDFTDV--GPSVVMATPGGLQSGLSRQLFDMWCSDKKNA 364
Query: 331 VLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+ GTLA+ + + PK V++ PL
Sbjct: 365 CVIPGFLVEGTLAKTIINE--PKEVQLMNGLTAPL 397
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 189/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 154 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++HS
Sbjct: 213 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 328 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITTMS 385
Query: 360 SRRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 179/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 79 ----AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSKV 132
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + Y + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 133 SVEDMLYDESDIARSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 192
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL L F +I Y +QP + + F + I T+ GG V
Sbjct: 193 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIIREKRFTEVIHNTVSQGGRV 252
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M + I
Sbjct: 253 LIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQ 312
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS L++G S +F +W +D KN
Sbjct: 313 FAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNA 367
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 368 CVIPGYVVEGTLAKTIINEP 387
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 172/364 (47%), Gaps = 34/364 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYR----------------L 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVXXXXXXXXXX 118
Query: 94 GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
GL + D S + + +YH + GI AGH+LG +++I G V++
Sbjct: 119 GLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLF 174
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R ++HLN + +++ + ++P + I T+ GG V
Sbjct: 175 TGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRV 234
Query: 214 LLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
LLPV + GR E++LIL++YW+ H+ PI++ + ++ + ++++ M D I
Sbjct: 235 LLPVFALGRAQEIMLILDEYWSRHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDI 294
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+ W + K
Sbjct: 295 RKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLERWCPEDK 352
Query: 329 NLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKKEE 384
NLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q L+ E
Sbjct: 353 NLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIE 412
Query: 385 ALKA 388
+ A
Sbjct: 413 KISA 416
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 31/356 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHFDPSLLQPLSKVAST---- 54
+ +++ PL + LVS+ G N + DCG +ND ++ T
Sbjct: 2 SDIRIVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDY 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------QY 102
I+ V+LSH H GALPY + G + P++ T P + + + D +
Sbjct: 62 INCVILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVDKKGEQNF 121
Query: 103 LSRRSV---TRLTYSQNYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + + R + N H K + + + + AGH+LG ++ + + V+Y DYN
Sbjct: 122 FTSQMIKDCMRKVITVNLHQCVKVDDQLEIKAYYAGHVLGAAMFHVRVGHQSVVYTGDYN 181
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL ++ RP +LIT++ A + ++ RE F + + L G VL+PV
Sbjct: 182 MTPDRHLGSAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLKKLHECLERDGKVLIPV 240
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPIYF T ++ Y K F+ W I +F
Sbjct: 241 FALGRAQELCILLESYWERMNLKYPIYFSTGLTEKANHYYKLFISWTNQKIKNTF--IHR 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N F KH+ ++S +D GP +V A+ L AG S IF +WA D KN+++
Sbjct: 299 NMFDFKHIKAF-DRSYIDQP--GPMIVFATPGMLHAGLSLQIFKKWAEDEKNMLIM 351
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 492 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
K+ G+ + +D K+V+ L+VQ ++ + AD + I ++ P ++LV
Sbjct: 363 KVLSGTKKIEID---KKLVNIRLSVQ------YMSFSAHADAKGIMQLIQLAEPKNVLLV 413
Query: 552 HGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
HG A E L+Q + H Y P ET+ + + + V +S L L + +G
Sbjct: 414 HGEAAKMEFLRQKINEEFGIHCYMPANGETVAIATTP-SISVNMSSLLFKRALEESIG 470
>gi|6323144|ref|NP_013216.1| Cft2p [Saccharomyces cerevisiae S288c]
gi|74645023|sp|Q12102.1|CFT2_YEAST RecName: Full=Cleavage factor two protein 2; AltName: Full=105 kDa
protein associated with polyadenylation factor I
gi|1256878|gb|AAB67560.1| Ydh1p: 105 kDa protein associated with polyadenylation factor 1 (PF
I) [Saccharomyces cerevisiae]
gi|1297030|emb|CAA61694.1| L2946 [Saccharomyces cerevisiae]
gi|1360512|emb|CAA97682.1| CFT2 [Saccharomyces cerevisiae]
gi|151941280|gb|EDN59658.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|256271979|gb|EEU06997.1| Cft2p [Saccharomyces cerevisiae JAY291]
gi|285813533|tpg|DAA09429.1| TPA: Cft2p [Saccharomyces cerevisiae S288c]
gi|392297633|gb|EIW08732.1| Cft2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 859
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 192/838 (22%), Positives = 319/838 (38%), Gaps = 197/838 (23%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 312
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 313 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 371
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 418
A++ + K++ K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 419 NASADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPM 450
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 451 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 471
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 472 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 523
Y + D ++ G G A L +D SK + + VQ+KC ++
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVV 656
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 583
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 630
++ + + + L + + ++++ D Y +A V + K L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 631 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 182/352 (51%), Gaps = 32/352 (9%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G N ++DCG H S L L V A ID +L++H H GALP+ + +
Sbjct: 37 MLEFKGKNVMLDCGI--HPGLSGLDALPFVDLIEADEIDLLLVTHFHLDHSGALPWFLLK 94
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSG 121
F +T+ +YR LL+ Y + +S S ++ Y+ N+H
Sbjct: 95 TKFKGRCFMTHATKAIYRW-LLSDYIK-VSNISTEQMLYTDHDLEESMEKIETINFHEEK 152
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
+ GI + AGH+LG ++ I G V+Y D++R++++HL + S ++P VLIT
Sbjct: 153 EIFGIKFWAYHAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPS-IKPDVLIT 211
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ H R++RE F + I + GG L+PV + GR ELLLIL+DYW++H
Sbjct: 212 ESTYGTHIHEKREERETRFTNLIHTIINRGGRCLIPVFALGRAQELLLILDDYWSQHPEL 271
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ PIY+ + ++ + ++++ M D I + + + +N F+ +H+ L D+
Sbjct: 272 HDIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFIFRHIHNLKGIDHFDDI- 328
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 329 -GPCVVMASPGMMQSGLSRELFELWCTDSKNGVIIAGYCVEGTLAKQILSEP 379
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 188/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 35 MLEFKGKRIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 94
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 95 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDV 152
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 153 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 211
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW +HS
Sbjct: 212 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWGQHSELHE 271
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 272 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 326
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 327 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKGILSE--PEEITTMS 384
Query: 360 SRRVPL 365
+++PL
Sbjct: 385 GQKLPL 390
>gi|367031802|ref|XP_003665184.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
gi|347012455|gb|AEO59939.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
Length = 1035
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 187/446 (41%), Gaps = 107/446 (23%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G E+ S L+ +DG L+D GW++ FD L+ L K T+ +LL+H
Sbjct: 5 SPLQGALTESAASQSLLELDGGVKVLVDVGWDETFDVEKLRELEKQVPTLSLILLTHATI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T PV LG D Y S
Sbjct: 65 NHLGAYAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPMAATTIPQTSLAESSYS 124
Query: 106 ------------------RSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGH 135
+ R L YSQ + G+ + + +GH
Sbjct: 125 YAQASSADHKLLLQPPTPDEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 181
LGGT+W I E ++YAVD+++ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWSQARENVFSGAAWLGGGHGAAGGAEVIEQLRKPTALVC 244
Query: 182 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------ 235
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W
Sbjct: 245 SSRTPETALPRGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRSEVAKD 304
Query: 236 -EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-----TSRDNA---------- 279
E + +Y ST+ +S LEWM DSI + FE T N+
Sbjct: 305 NEVFKSTKVYLAGRSVGSTMRNARSMLEWMDDSIVREFEAVAGGTRTGNSGGGAGSGAKG 364
Query: 280 -----FLLKHVTLLINKSEL----------DNAPDGPKLVLASMASLEAGFSHDIFVEWA 324
F KH+ LL K+++ D+A +++LA+ +SLE GFS D+ A
Sbjct: 365 KEAGPFDFKHLRLLERKAQVERVLQQATATDDAEPRGRVILATDSSLEWGFSKDVMRAIA 424
Query: 325 SDVKNLVLFTERGQFG----TLARML 346
D +NLV+ TE+ ++ARML
Sbjct: 425 EDPRNLVILTEKPSLNPGKPSIARML 450
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 66/225 (29%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYI---------IKDEDMDQAAMHIGGDDGKL------- 493
MFP D+FGE+I P+DY+ +DE D G GK
Sbjct: 597 MFPIVVRRKRNDEFGELIRPEDYLRAEEREDAEAQDERQDGQREEQGQGLGKKRKFDDVG 656
Query: 494 --------------------DEGSASLILDAK------------------PSKVVSNELT 515
DE A +LD P+K+V T
Sbjct: 657 AAKGGASGANKRPQPKRAVSDEPEAGALLDGHAGDELDELEDEEEEAVVGPAKLVVKSQT 716
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 572
V VK + F+D+ G D RS+ ++ + P KL+LV G E T L C K +
Sbjct: 717 VSVKLRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVAGGEEETHALAADCRKLLSAQLTS 776
Query: 573 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 608
V+TP + T+D + D A+ V+L++ + + ++ +
Sbjct: 777 ESSSQAAIDVFTPAVGATVDASVDTNAWVVKLADPFVKRLKWQNV 821
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 179/350 (51%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 39 MLEFKGKKIMLDCGIHPGLSGLDALPFVDIIEADEIDLLLISHFHLDHCGALPWFLQKTN 98
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 99 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTEADLESSMDKIETINFHEEKDV 156
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + V P VLIT++
Sbjct: 157 YGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-VHPDVLITES 215
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++H
Sbjct: 216 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHE 275
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ L D+ G
Sbjct: 276 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHISNLKGIDHFDDI--G 331
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 332 PCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEP 381
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 163/341 (47%), Gaps = 34/341 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 61 SKVDVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNGTA 120
Query: 94 ---GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
G +Y S ++ + ++H + GI + AGH+LG ++++ G
Sbjct: 121 ASSGDENLYTDEDLAESFDKIE-TVDFHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLR 179
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
+++ DY+R ++HLN + S +++ + ++P + I T+ G
Sbjct: 180 ILFTGDYSRELDRHLNSAEVPSLPSDILIVESTFGTATHEPRVSKERKLTQLIHTTVAKG 239
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++ M
Sbjct: 240 GRVLLPVFALGRAQEIMLILDEYWSQHAEELGTGQVPIFYASNLARKCMSVFQTYVNMMN 299
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 300 DKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCP 357
Query: 326 DVKNLVLFTERGQFGTLARML----QADPPPKAVKVTMSRR 362
D KNLVL T GT+A+ L ++ P VT+ RR
Sbjct: 358 DEKNLVLITGYSVEGTMAKFLILEPESIPSINNPDVTIPRR 398
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 162/313 (51%), Gaps = 23/313 (7%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRSVTRLT 112
+DA+ ++H H A+P+ + + +F T P + + M D + L + +
Sbjct: 64 VDALFVTHFHLDHCAAVPFLCGRTDFNGRIFMTHPTKAIYHMLMQDFCRLLKNQEPSEQL 123
Query: 113 YSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
+ + ++H +G+ V P+ AGH+LG ++ + G V+Y DY+R
Sbjct: 124 FGEKDLEASMKKIEVIDFHQEVDVDGVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSR 183
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
++HL + + + P V+I ++ + PR++RE+ F + + LR GG VLLPV
Sbjct: 184 IADRHLPAADVPA-IPPHVVIVESTYGVSPHSPREEREIRFTEKVQTILRRGGRVLLPVV 242
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+ GR ELLLILED+WA++ PIY + ++ + ++++ + + +FE +
Sbjct: 243 ALGRAQELLLILEDFWAQNPDLQRVPIYQASALARKAMTIYQTYINVLNSDMKAAFEEA- 301
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F+ HV + SELD+ GP +VLA+ + L++G S ++F W D KN V+ +
Sbjct: 302 -NPFVFNHVKHVSKSSELDDV--GPCVVLATPSMLQSGLSRELFESWCEDPKNGVIIADF 358
Query: 337 GQFGTLARMLQAD 349
GTLAR + +D
Sbjct: 359 AVQGTLAREILSD 371
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 166/363 (45%), Gaps = 30/363 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N ++DCG +ND D S + + +D
Sbjct: 4 IRVVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRR--------- 106
V++SH H GALPY + +G P++ T P + LL Y + R
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 123
Query: 107 ----SVTRLTYSQNYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
S + T + N H + + + + + + AGH+LG + I + V+Y DYN
Sbjct: 124 EMIKSCMKKTIAMNLHQTIQVDDELEIKAYYAGHVLGAAMIHIRVGEQSVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLKKVHDAVDKGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L PIYF ++ Y K F+ W I +F + N F
Sbjct: 243 GRAQELCILLETYWDRMNLKVPIYFSMGLTEKANHYYKMFITWTNQKIKNTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ +K DN GP +V A+ L G S IF +W KN+V+ G
Sbjct: 301 DFKHIKPF-DKVYADNP--GPMVVFATPGMLHGGLSLQIFKKWCGGEKNMVIMPGYCVSG 357
Query: 341 TLA 343
T+
Sbjct: 358 TIG 360
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL+ + + N+ ++VK + ++ + AD + I ++ P ++LVHG AE E
Sbjct: 363 ILNGQRKIEMENKQIIEVKMSVQYMSFSAHADAKGIMQLIRQCQPSNVMLVHGEAEKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTS 586
LK + + P ET+ + +
Sbjct: 423 LKTKINEEFGISCFNPANGETVSIEA 448
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 188/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ + +
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLLKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDM 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 154 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++HS
Sbjct: 213 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 328 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITTMS 385
Query: 360 SRRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 23/309 (7%)
Query: 41 DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------- 89
D S + IDAV++SH H GALP+ + LG P++ T P
Sbjct: 24 DFSYISKTGNFTDIIDAVIISHFHLDHCGALPFFTEMLGYDGPIYMTHPTKAICPILLED 83
Query: 90 -----VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI 144
V R G + + + + ++ + + + + + AGH+LG ++ +
Sbjct: 84 YRKITVERKGETNFFTSAMIKNCMKKVHAVSLHQTIKVDDELEIKAYYAGHVLGAAMFYV 143
Query: 145 TKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAI 203
E V+Y DYN ++HL ++ VRP VL+T++ A + ++ RE F +
Sbjct: 144 RVGQESVVYTGDYNMTPDRHLGSAWIDK-VRPDVLVTESTYATTIRDSKRSRERDFLTKV 202
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW 263
+ + GGNV++PV + GR EL +++E YW L+ PIYF T ++ ++ K F+ W
Sbjct: 203 HECVLNGGNVIIPVFALGRAQELCILIESYWDRMGLDVPIYFSTGLTERATEFYKLFINW 262
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
I +F S+ N F KH+ N++ +D GPK++ A+ L AG S ++F +W
Sbjct: 263 TNQKIKSTF--SQRNMFDFKHIKTW-NRNYIDQP--GPKVLFATPGMLNAGTSLEVFKKW 317
Query: 324 ASDVKNLVL 332
A D KN+V+
Sbjct: 318 APDPKNMVI 326
>gi|190406148|gb|EDV09415.1| 105 kDa protein associated with polyadenylation factor 1
[Saccharomyces cerevisiae RM11-1a]
gi|207343065|gb|EDZ70642.1| YLR115Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 859
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 191/838 (22%), Positives = 319/838 (38%), Gaps = 197/838 (23%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 312
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 313 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 371
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 418
A++ + K++ K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 419 NASADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPM 450
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 451 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 471
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNNRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 472 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 523
Y + D ++ G G A L +D SK + + VQ+KC ++
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVV 656
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 583
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 630
++ + + + L + + ++++ D Y +A V + + L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVRESLPQVKNHQKTASRSKLVL 775
Query: 631 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 172/361 (47%), Gaps = 45/361 (12%)
Query: 21 YLVSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHL 68
+++S G ++D G + D FD STID +L+SH H
Sbjct: 53 HVISFKGKTIMLDAGVHPAHSGLASLPFYDEFD----------LSTIDILLISHFHLDHA 102
Query: 69 GALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRR-------SVTRLTYSQN-- 116
+LPY M++ VF T P +YR LL+ + + S S LT S N
Sbjct: 103 ASLPYVMQKTNFKGRVFMTHPTKGIYRW-LLSDFVRVTSGAESDPDLYSEADLTASFNKI 161
Query: 117 ----YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
YH + + G+ + AGH+LG ++ I G V++ DY+R +++HLN +
Sbjct: 162 ETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPP 221
Query: 173 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
++P +LI ++ PR +RE I TL GG LLPV + GR E+LLIL+
Sbjct: 222 -MKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILD 280
Query: 232 DYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 289
+YW H + IY+ + ++ I ++++ M D+I + F + N F K++ +
Sbjct: 281 EYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIK 340
Query: 290 NKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD 349
N D+ GP +++AS L++G S + WA D KN ++ T GT+A+ + +
Sbjct: 341 NLDRFDDM--GPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEGTMAKQIINE 398
Query: 350 P 350
P
Sbjct: 399 P 399
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 188/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 154 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++H
Sbjct: 213 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 328 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITTMS 385
Query: 360 SRRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 188/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 154 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++H
Sbjct: 213 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 328 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITTMS 385
Query: 360 SRRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|343429654|emb|CBQ73226.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1039
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 194/432 (44%), Gaps = 98/432 (22%)
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS 107
L ++A TID VLLSH HLG YA +LGL V++T PV +G LT+ + + RS
Sbjct: 129 LRQLAPTIDLVLLSHSSLDHLGLYAYAHAKLGLRCQVYATMPVQSMGKLTVLEAIQTWRS 188
Query: 108 -----------------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 138
+ + Y Q HL GK + + + AGH LG
Sbjct: 189 EVDIEREAPSGLARRCLATPDQVEEAFEQIKTVRYMQPTHLEGKCASLTLTAYNAGHSLG 248
Query: 139 GTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-----------------ESFVRPAVLI 180
G VWKI + V+ A+D+N +E+HL+GT+L ++ RP +LI
Sbjct: 249 GAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAAPGAPGAASGADAVRRPDLLI 308
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA---E 236
T+ L R+ R+ D + T++AG ++L P+D++ R+LEL+++L+ +WA
Sbjct: 309 TEIERGLVVNTRRKDRDAALIDLVHTTIQAGHSLLFPIDASARLLELMVLLDQHWAYAYP 368
Query: 237 HSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFET--------------------- 274
H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 369 HA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKAGETIEAEKDKQPQRNARGGPNRSA 427
Query: 275 SRDNAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
+ + K+V + + +D A D K+VLA S+ G S + +A + ++V+
Sbjct: 428 AASSPLDFKYVRVFPSLQAMDEAIPHDQAKVVLAVPPSMTHGPSRRLLARFAQNPNDVVV 487
Query: 333 FTERGQFGTLARMLQ---------------------ADPPPKAVKVTMSRRVPLVGEELI 371
RG+ G+L R L P A++ + +VPL GEEL
Sbjct: 488 LISRGEPGSLCRELWNAWNTHQSKGFSWAQGKLGQIVTPTKTALRFELKSKVPLEGEELR 547
Query: 372 AY-EEEQTRLKK 382
A+ E EQ K
Sbjct: 548 AHLEAEQAERDK 559
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 68/268 (25%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ-- 563
PSK ++ + V + C + +I+ G DGR++KT++ + P +LV+V+G +
Sbjct: 750 PSKYITEHVHVPLACRVAYIEMGGLNDGRALKTLIPQLHPRRLVMVNGDKRTNADMLGVL 809
Query: 564 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 623
+K + VY +++ + AY VQL E L++ + + ++E+A V A V +
Sbjct: 810 GAIKTLTRDVYAAGWMQSVQIGQVTSAYTVQLGEALLAGLELSRFEEFEVAHVRALVRRA 869
Query: 624 --ENGMLSL------------------------------------------LPISTPAPP 639
E+G+ S+ LP T AP
Sbjct: 870 VGEDGVESVPVLETEAASAAVEDEDTDQRTLDALATSGILKPSPPTVQATRLPAPTAAPV 929
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQV--EFAG-GALRC---------GEYVTIRKVGPAGQ 687
++ +GDLK+ LK L+S ++ +FAG G L C + VT++K G
Sbjct: 930 QGTLFIGDLKLNTLKTLLASTPYRLPADFAGEGMLVCAPPSSTGMGADAVTVQKQG---- 985
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
KG +IVI+G + ++ +R +Y
Sbjct: 986 KG------RIVIQGNVTRNFGSVRKAVY 1007
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 189/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 1100 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 1159
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S + ++ Y++ N+H
Sbjct: 1160 FKGRCFMTHATKAIYRW-LLSDYIK-VSNIATEQMLYTESDLETSMDKIETINFHEEKDV 1217
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT++
Sbjct: 1218 FGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLITES 1276
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++HS
Sbjct: 1277 TYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHE 1336
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+ D
Sbjct: 1337 IPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFEDI 1391
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 1392 GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITTMS 1449
Query: 360 SRRVPL 365
+++PL
Sbjct: 1450 GQKLPL 1455
>gi|146417489|ref|XP_001484713.1| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 235/556 (42%), Gaps = 128/556 (23%)
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL----- 165
L YSQ LS +++ P+ AGH LGGT W ITK E VIYA +N K+ L
Sbjct: 19 LKYSQT--LSLFENKMIITPYNAGHTLGGTFWCITKRLEKVIYAPSWNHSKDSFLSSSSF 76
Query: 166 ----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
G L +RP VLIT+ + N P +++ E F + TL GG V+LP +G
Sbjct: 77 LSASTGNPLSQLMRPTVLITNT-DLGSNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSG 135
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 273
R LELL +++ + + P+YFL+Y + ++Y S LEWM + K +E
Sbjct: 136 RFLELLHLVDHHLQSQPI--PVYFLSYSGTKVLNYASSLLEWMSTLLVKEWEAASSASMN 193
Query: 274 -TSRDN-AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNL 330
T+++N F V LL++ EL GPK+VL + + +G S ++ D KN
Sbjct: 194 STNKNNFPFDPSKVDLLLDPKELIQL-SGPKIVLCAGIDMNSGDVSFEVLKYLCLDQKNT 252
Query: 331 VLFTERGQFGT--------------------------LARMLQADPPPKAVKVTMSRRVP 364
VL TE+ FG LA + P + +SR P
Sbjct: 253 VLLTEKTHFGADFSINAQLFTDWVRLSREKYGNAEDGLAIGYEGTIPLRG----LSREDP 308
Query: 365 LVGEELIAYEE-----------EQTRLKKEEA-LKASLVKEEESKASLGPDNNLSGD--- 409
L G EL +++E EQ R +K + L A ++EE+S + G D S +
Sbjct: 309 LSGSELTSFQERINHQRKKKLFEQVRDRKNQNLLNADNLEEEDSSSDDGEDAESSDEEMP 368
Query: 410 ----------PMVIDAN-NANASADVVEPHGGRYR-------DILIDGFVPPSTSVAPMF 451
P ID N NA + D + D+ I + P ++ P
Sbjct: 369 TTTETEAGAMPGAIDTNVNAIVTQDAFVADQVKQTLDDELPLDVKITHKLKPRQAMFPYI 428
Query: 452 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---------------GGDDGKLDEG 496
P ++ ++DD+GEVI+ DY + ED+ A + + DD + G
Sbjct: 429 PPHKR--KFDDYGEVIDIKDY-QRAEDLTNAKLILDSKRKFEQEDKLKWGNDDDRRSGRG 485
Query: 497 SASLILDAKPSKVVSNEL---------------------TVQVKCLLIFIDYEGRADGRS 535
P + ++N++ ++ +C L F+D G D RS
Sbjct: 486 GGIQTNRLTPQETLNNQILQKNLHTLFQPRKRVIVTKTQDLKFRCSLSFVDLAGLVDLRS 545
Query: 536 IKTILSHVAPLKLVLV 551
+ I+S + P LVL+
Sbjct: 546 LSLIVSSLKPYNLVLL 561
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYTGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +Y+L LL+ Y + +S+
Sbjct: 79 ----AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLSDYVK-VSKV 132
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 133 SVEDMLFDESDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILY 192
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 213
DY+R +++HL L F +I Y +QP + + F + I T+ GG V
Sbjct: 193 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTVSQGGRV 252
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M + I
Sbjct: 253 LIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQ 312
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F KH+ L + +DN D GP +V+AS + L++G S +F +W +D +N
Sbjct: 313 FAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPSGLQSGLSRQLFDKWCTDKRNA 367
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 368 CVIPGYVVEGTLAKTIINEP 387
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 165/340 (48%), Gaps = 26/340 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V++SH H GALPY + +G P++ T P + + + D R+ N+
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED---YRKIAVDKKGEANF 120
Query: 118 HLSGKGEGI---VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174
S + VVA H L TV +I E V+Y DYN ++HL ++
Sbjct: 121 FTSQMIKDCMKKVVAVH-----LHQTV-QIKVGSESVVYTGDYNMTPDRHLGAAWIDK-C 173
Query: 175 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
RP +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +
Sbjct: 174 RPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF 233
Query: 234 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
W +L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 234 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAF 290
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 291 ADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 328
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 174/367 (47%), Gaps = 33/367 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMY---------- 99
S ID +L+SH H +LPY M++ VF T P +YR L
Sbjct: 59 SKIDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 100 -----DQYLSRRSVTRLTYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
D+ L ++ + +YH + GI AGH+LG +++I G
Sbjct: 119 SMGGKDESLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLR 178
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
V++ DY+R ++HLN + +++ + ++P + + I T+ G
Sbjct: 179 VLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNREKKLTQLIHSTVMRG 238
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++ M
Sbjct: 239 GRVLLPVFALGRAQEIMLILDEYWSQHTDELGGGQVPIFYASNLAKKCMSVFQTYVNMMN 298
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+ W
Sbjct: 299 DDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLERWCP 356
Query: 326 DVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLK 381
+ KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q L+
Sbjct: 357 EDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLE 416
Query: 382 KEEALKA 388
E + A
Sbjct: 417 FIEKISA 423
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 164/361 (45%), Gaps = 33/361 (9%)
Query: 29 NFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
+ DCG + F PL +T+D L++H H A+PY +++ +F
Sbjct: 48 TVMFDCGIHPAFKGMDSLPLLDDIDIATVDVALITHFHLDHCAAVPYLLRKTRFKGRIFM 107
Query: 87 TEPV----YRL--------------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVV 128
T P Y L L D S + + + Q +SG + +
Sbjct: 108 THPTKAIYYSLLRDLAKGAKHSSEEALFNEEDLDASMEQIEVVDFYQTIEVSG----MQI 163
Query: 129 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188
P+ AGH+LG ++ + G +Y DY+R ++HL G V P ++I ++
Sbjct: 164 TPYRAGHVLGAAMFMVEVAGLRCLYTGDYSRLPDRHLPGADTPP-VTPHIVIVESTYGTS 222
Query: 189 NQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---NYPIY 244
PRQQRE + D I TL GG VL+P+ + GR ELLL+L++YW H PIY
Sbjct: 223 RHLPRQQREQLLIDNIRTTLNRGGRVLMPIVALGRAQELLLLLDEYWEAHKSELGGIPIY 282
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
+ + S + ++++E + + I K F N F +HV L N + GP ++
Sbjct: 283 QASSMMSKALGVYQTYVESLNEDIKKVFHDR--NPFKFRHVQTLKNPAHFIADYSGPCVI 340
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 364
+A+ + L++G S D F W D +N + + GTLA+ + P ++ RRVP
Sbjct: 341 MATPSGLQSGASRDFFEAWCEDARNTCIICDFAVQGTLAKEILGG--PSSITTREGRRVP 398
Query: 365 L 365
L
Sbjct: 399 L 399
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 29/324 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVT 109
ST+D +L+SH H +LPY M++ VF T P +YR LL+ + + S S +
Sbjct: 63 STVDVLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRW-LLSDFVKVTSIGSTS 121
Query: 110 RLTYSQN------------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
+N +H + GI AGH+LG ++++ G +
Sbjct: 122 FSDKDENLYTDEDLAESFDRIETIDFHSTIDVNGIKFVAFHAGHVLGAAMFQVEIAGLKI 181
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + +++ + ++P + + I T+ GG
Sbjct: 182 LFTGDYSRETDRHLNSAEVPPSSSDVLIVESTFGTATHEPRINREKKLTQLIHSTVMRGG 241
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VLLPV + GR E++LIL++YW++H+ P+++ + ++ + ++++ M D
Sbjct: 242 RVLLPVFALGRAQEIMLILDEYWSQHADELGNGQVPVFYASNLAKKCMSVFQTYVNMMND 301
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 302 DIRKKFRDSQSNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCPG 359
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KNLVL T GT+A+ + +P
Sbjct: 360 EKNLVLITGYSVEGTMAKFIMLEP 383
>gi|323353975|gb|EGA85828.1| Cft2p [Saccharomyces cerevisiae VL3]
Length = 859
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 189/832 (22%), Positives = 325/832 (39%), Gaps = 185/832 (22%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 322
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 323 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 380
AS + ++ E+ + + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILXIVEQDERXWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 381 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 427
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 428 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 459
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIK 545
Query: 460 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 479
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPIS 605
Query: 480 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVD 665
Query: 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 592
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 593 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------------TENGMLSLLPISTP 636
+ + L + + ++++ D Y +A V VG+ L L P+
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATV---VGRLVXESLPQVXNHQKTASRSKLVLKPLHGS 781
Query: 637 APPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
+ HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 782 SRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIXKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|401624663|gb|EJS42715.1| cft2p [Saccharomyces arboricola H-6]
Length = 858
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 201/833 (24%), Positives = 329/833 (39%), Gaps = 174/833 (20%)
Query: 15 NENPLSYLVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHL 68
+E + +V D LID GWN PS ++ KV ID V+LS P T L
Sbjct: 12 SETTVGSVVRFDNVTLLIDPGWN----PSKVSYEQCVKYWEKVIPEIDVVILSQPTTECL 67
Query: 69 GA---LPYAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLS-----------------RRS 107
GA L Y +S V++T PV LG ++ D Y S +S
Sbjct: 68 GAHSLLYYNFISHFISRIHVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEKS 127
Query: 108 ---VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+ L YSQ L + +G+ + + AG GG++W I+ E +IYA +N ++
Sbjct: 128 FDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLIYAKRWNHTRDNI 187
Query: 165 LN--------GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 216
LN G L + +RP+ +IT +QP +++ + F+D + K L + G+V++P
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIITTLDKFGSSQPFKKRTKTFKDTLKKGLSSDGSVIIP 247
Query: 217 VDSAGRVLELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
VD +G+ LEL L+ E P+ L+Y TI Y KS LEW+ S+ K+
Sbjct: 248 VDMSGKFLELFTQVHELLFESTKINVHTQVPVLILSYARGRTITYAKSMLEWLSPSLLKT 307
Query: 272 FETSRDNA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV- 321
+E +R+N F + +I+ EL N G K+ S + G S +
Sbjct: 308 WE-NRNNTSPFEIGSRIKIISPKEL-NRYVGSKICFVSEVDALINEVITKVGNSEKTTLI 365
Query: 322 ------EWASDVKNLVLFTERGQFGTLARMLQADPPPKA---VKVTMSRRVPLVGEELIA 372
E AS + ++ F T + D P + + + L +EL A
Sbjct: 366 LTKPKFESASSLNKIINFLSENDRKT---SFKEDKPYTCDSYISIDTIKEEALNKDELEA 422
Query: 373 YEEEQTRLKKEEALKASLVKEEESKASLG--------PDNNLSGDPMVIDANNANASADV 424
++ + KK + K SLVK E K S G D ++G ++ A NA+ V
Sbjct: 423 FKLQIKEKKKNRSKKISLVKRESKKLSNGNATIDGSTADRTINGQDIL--AENADEEQAV 480
Query: 425 VEPHG----------------------------GRYRDILIDGFVPPS-TSVAPMFPFYE 455
V G + ++ +D + S TS MFPF
Sbjct: 481 VSIMGEDDDEEEEEEENDNLLSLLKDNTHKSAVKKNTEVPVDIIIQTSATSKHKMFPFNP 540
Query: 456 NNSEWDDFGEVIN-----PDDYIIKDEDMDQAAMHIGGDD-------------------- 490
+ DD+G V++ PDD + + + + GG
Sbjct: 541 AKIKKDDYGAVVDFTMFIPDDLENANHNSRKRPLKDGGKSMGLAGEEEGKNEEEDGYDLG 600
Query: 491 ---GKLDEGSAS-------------------LILDAKPSKVVSNELTVQVKCLLIFIDYE 528
GK + AS L +D SK + + +Q+KC ++ ++ +
Sbjct: 601 DPVGKKRKHRASRYSGFSATDETENFDNLDYLKIDKTLSKRIVSTTDIQLKCTVVMLNLQ 660
Query: 529 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 588
D RS I + K+VL E + + V P + + I+ + +
Sbjct: 661 SLVDQRSASIIWPSLRSRKIVLTAPKQIQNEEVTAKLINKNIEVVNMP-LNKIIEFNTTI 719
Query: 589 CAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPIST 635
A + + +L + + ++++ D Y +A V + K L L P+
Sbjct: 720 KALDISIDSELDNLLKWQRISDSYTVATVIGRLIKESLPQINNHQRTASRSKLVLKPLDR 779
Query: 636 PAPPHKSVL--VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
+ HK+ + +GD+K+ LK L+ K EF G G L V +RK+ A
Sbjct: 780 SSRNHKTGMLSIGDVKLVQLKKQLTDKNYVAEFKGEGTLVINGKVAVRKINDA 832
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 161/328 (49%), Gaps = 31/328 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
ST+D +L+SH H +LPY M++ VF T P +YR L
Sbjct: 59 STVDILLISHFHLDHAASLPYVMQRTPFKGRVFMTHPTKAIYRWLLRDFVRVTAIGVDST 118
Query: 97 -----TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
++Y S ++ + +YH + + GI + AGH+LG +++I G +
Sbjct: 119 LAAEESLYTDEDLAESFDKIE-TIDYHSTVEVNGIKFTAYHAGHVLGAAMFQIEIAGLKI 177
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + +++ + ++P + I T+ GG
Sbjct: 178 LFTGDYSREMDRHLNSAEVPPQSSDILVVESTFGTATHEPRLHRENKLTQLIHTTVGRGG 237
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VL+PV + GR EL+LIL++YW +HS PI++ + ++ + ++++ M D
Sbjct: 238 RVLMPVFALGRAQELMLILDEYWQKHSDELGSGQVPIFYASDLARKCMSVFQTYVNMMND 297
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
I K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ +W +
Sbjct: 298 DIRKKFRDSQTNPFIFKNISYLKNLEEFQDF--GPSVMLASPGMLQSGLSRDLLEKWCPE 355
Query: 327 VKNLVLFTERGQFGTLAR--MLQADPPP 352
KNLVL T GT+A+ ML+ D P
Sbjct: 356 QKNLVLITGYSVEGTMAKYIMLEPDTIP 383
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 179/350 (51%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + I + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTIHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINV--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYSVEGTLAKHIMSEP 378
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 172/377 (45%), Gaps = 53/377 (14%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVT 109
S ID +L+SH H +LPY M++ VF T P +YR L R
Sbjct: 59 SKIDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLL----------RDFV 108
Query: 110 RLTY-----------------------------SQNYHLSGKGEGIVVAPHVAGHLLGGT 140
R+T + +YH + GI AGH+LG
Sbjct: 109 RVTSIGSSSSSMGGKDESLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAA 168
Query: 141 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQ 200
+++I G V++ DY+R ++HLN + +++ + ++P +
Sbjct: 169 MFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLT 228
Query: 201 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTID 255
I T+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ +
Sbjct: 229 QLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMS 288
Query: 256 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
++++ M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G
Sbjct: 289 VFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGL 346
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELI 371
S D+ W + KNLVL T GT+A+ ML+ D P ++T+ RR +
Sbjct: 347 SRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNSEITIPRRCQVEEISFA 406
Query: 372 AYEEEQTRLKKEEALKA 388
A+ + Q L+ E + A
Sbjct: 407 AHVDFQENLEFIEKISA 423
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 179/377 (47%), Gaps = 38/377 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 43 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 102
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S S T+ Y++ +YH +
Sbjct: 103 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQDHLNTFSQIEAIDYHTTH 162
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 163 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKDVKIDVLIT 222
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW +H
Sbjct: 223 ESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEF 282
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 283 QKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGQGGPWDFKYIR 342
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L++G S ++F WA + KN V+ T GT+AR +
Sbjct: 343 SLKNLDRFDDV--GGCVMLASPGMLQSGVSRELFERWAPNEKNGVIITGYSVEGTMARQI 400
Query: 347 QADPPPKAVKVTMSRRV 363
+ P + MSR +
Sbjct: 401 MQE--PDQIPAVMSRNL 415
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 180/368 (48%), Gaps = 36/368 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
ST+D +L+SH H +LPY M++ + VF T P +YR L
Sbjct: 59 STVDILLISHFHLDHAASLPYVMQRTNFNGRVFMTHPTKAIYRWLLKDFVRVTSIGGSPN 118
Query: 97 ----TMY-DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
+Y D+ LS S R+ + +YH + GI AGH+LG +++I V
Sbjct: 119 EKDDNLYTDEDLS-ESFDRIE-TIDYHSTMDVNGIKFTAFHAGHVLGAAMFQIELGSLRV 176
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + +++ + ++P + + I T+ GG
Sbjct: 177 LFTGDYSRELDRHLNSAEIPPLASDVLIVESTFGTATHEPRLSREKKLTQLIHSTVTKGG 236
Query: 212 NVLLPVDSAGRVLELLLILEDYWA--EHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VL+PV + GR EL+LIL++YW+ E L PIY+ + ++ ++ ++++ M D
Sbjct: 237 RVLMPVFALGRAQELMLILDEYWSHNEEELGNGQVPIYYASNLAKRSMSVFQTYVNMMND 296
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWAS 325
SI K F S+ N F+ K+++ L N +D+ D GP ++LA+ L+ G S D+ +W
Sbjct: 297 SIRKKFRDSKTNPFIFKNISYLKN---IDSFQDFGPSVMLAAPGMLQNGLSRDLLEKWCP 353
Query: 326 DVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQTRLK 381
+ KN+VL T G++A+ L +P +V + RR + A+ + Q +
Sbjct: 354 EPKNMVLITGYSVEGSMAKYLMLEPENIPSVNNPEVNIPRRCQVEEISFAAHVDFQENID 413
Query: 382 KEEALKAS 389
E ++AS
Sbjct: 414 FIEQIRAS 421
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 163/319 (51%), Gaps = 26/319 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-------------- 95
ST+D +L+SH H +LPY M+ VF T P +YR L
Sbjct: 25 STVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHPTKAIYRWLLSDFVKVTSIGSSSS 84
Query: 96 LTMY-DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
+Y D+ LS S R+ + +YH + + +GI + AGH+LG ++ I G +++
Sbjct: 85 SALYTDEDLSE-SFDRIE-TIDYHSTIEVDGIRFTAYHAGHVLGAAMFFIEIGGLKLLFT 142
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
DY+R + +HLN + +P V++T++ PR ++E+ + I TL GG V
Sbjct: 143 GDYSREENRHLNPAEVPP-TKPDVMVTESTFGTATHEPRLEKEVRLTNLIHSTLIKGGRV 201
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
LLPV + G ELLLIL++YW++H N +Y+ + ++ + ++++ M D+I K
Sbjct: 202 LLPVFALGTAQELLLILDEYWSQHQDLENVNVYYASSLAKKCLAVFQTYINMMNDNIRKQ 261
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F N F K++ + N + D+ GP +V+AS L+ G S ++ WA D +N V
Sbjct: 262 FRDQNSNPFQFKYIKNIKNLDKFDDF--GPCVVVASPGMLQNGVSRELLERWAPDSRNSV 319
Query: 332 LFTERGQFGTLARMLQADP 350
+ T GTLA+ L +P
Sbjct: 320 ILTGYSVEGTLAKTLLTEP 338
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 29/364 (7%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-----STID 56
T ++VTPL + L+ + G N ++DCG + ++ P S +A ++D
Sbjct: 2 TDIKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLD 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTY 113
V++SH H GALP+ + +G + P++ T P + + + D + R+ T
Sbjct: 62 CVIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFT 121
Query: 114 SQNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
S + K I + + AGH+LG ++ + + V+Y DYN
Sbjct: 122 SAHIKDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMT 181
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ RP +LI+++ A + ++ RE F + + GG VL+PV +
Sbjct: 182 PDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIPVFA 240
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F + N
Sbjct: 241 LGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQRNM 298
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KH+ +KS D GP +V A+ L AG S +F +WA + N+++
Sbjct: 299 FEFKHIRPF-DKSYADTP--GPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGYCVS 355
Query: 340 GTLA 343
GT+
Sbjct: 356 GTVG 359
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 29/364 (7%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-----STID 56
T ++VTPL + L+ + G N ++DCG + ++ P S +A ++D
Sbjct: 2 TDIKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLD 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTY 113
V++SH H GALP+ + +G + P++ T P + + + D + R+ T
Sbjct: 62 CVIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFT 121
Query: 114 SQNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
S + K I + + AGH+LG ++ + + V+Y DYN
Sbjct: 122 SAHIKDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMT 181
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ RP +LI+++ A + ++ RE F + + GG VL+PV +
Sbjct: 182 PDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIPVFA 240
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F + N
Sbjct: 241 LGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQRNM 298
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KH+ +KS D GP +V A+ L AG S +F +WA + N+++
Sbjct: 299 FEFKHIRPF-DKSYADTP--GPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGYCVS 355
Query: 340 GTLA 343
GT+
Sbjct: 356 GTVG 359
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 168/365 (46%), Gaps = 39/365 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LVSI G + DCG + F+ P +SK S ID
Sbjct: 1 MNVIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-----------------GLLTMYD 100
+++SH H GALPY + G P++ T P + + T D
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIVAGKGDSIFTYQD 120
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ V ++ ++ Y E + P+ AGH+LG ++ + + V+Y DY+
Sbjct: 121 ISNCMKKVVTISMNETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTT 177
Query: 161 KEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDS 219
+KHL ++ +RP +LIT++ Y ++ + + F A+S + GG VL+P+ +
Sbjct: 178 PDKHLGPASIKC-IRPDLLITESTYGSITRDCRKVKEREFLKAVSDCVARGGRVLIPIFA 236
Query: 220 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETSRDN 278
GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE N
Sbjct: 237 LGRAQELCLLLDGYWERTGLKTPVYFSSGLTEKANEIYKKFISYTNETVRKKIFER---N 293
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTE 335
F KH+ + +++ GP ++ AS L +G S IF EW D KNLV+ +
Sbjct: 294 MFEYKHIKPF-QRHYMESK--GPMVLFASPGMLHSGMSLKIFKEWCEDEKNLVIIPGYCV 350
Query: 336 RGQFG 340
RG G
Sbjct: 351 RGTIG 355
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + V+P +LI ++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-VKPDILIIES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A TMS
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA---TMS 385
Query: 361 -RRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 186/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 386
Query: 361 RRVPL 365
+++PL
Sbjct: 387 QKLPL 391
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 191/381 (50%), Gaps = 30/381 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSH 62
+++TPL +++ G ++DCG + P T ID +L+SH
Sbjct: 21 LRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLPFLDEIDTAEIDLLLVSH 80
Query: 63 PDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ---- 115
H G+LP+ +++ VF +T+ +YR LL+ Y + +S + + +++
Sbjct: 81 FHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRW-LLSDYVK-VSNIAAEDMLFTESDLE 138
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
++H + GI + AGH+LG ++ + G ++Y D++R++++HL
Sbjct: 139 KSMDKIETLHFHQEKEVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLM 198
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLE 225
+ S + P VLI ++ H R++RE F + + GG L+PV + GR E
Sbjct: 199 AAEIPS-ISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQE 257
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LLLIL++YW H + PIY+ + ++ + ++++ M D I K S N F+ K
Sbjct: 258 LLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIKKQIAIS--NPFVFK 315
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
H++ L + + D+ GP +V+AS +++G S ++F +W +D +N V+ GTLA
Sbjct: 316 HISNLKSIDQFDDI--GPSVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLA 373
Query: 344 RMLQADPPPKAVKVTMSRRVP 364
+ L ++ P+ V+ +++P
Sbjct: 374 KNLMSE--PEEVQTMSGQKIP 392
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + V+P +LI ++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-VKPDILIIES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A TMS
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA---TMS 385
Query: 361 -RRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 180/352 (51%), Gaps = 28/352 (7%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQ 77
+++ ++DCG + P + + + ID +L+SH H GALP+ +++
Sbjct: 38 CHIIQYKNKTIMLDCGIHPGRHGVEALPYTDIIAEDQIDLLLISHFHLDHCGALPWFLER 97
Query: 78 LGLSAPVF---STEPVYRLGLLTMY--------DQYLS-----RRSVTRLTYSQNYHLSG 121
VF +T+ +YR LL Y DQ L +S+T++ + ++H
Sbjct: 98 TSFKGRVFMTHATKAIYRW-LLADYVKVSNISTDQMLYTEKDLEKSMTKIE-TIHFHQEK 155
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
+ GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P VLI
Sbjct: 156 EVNGIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS-VKPDVLII 214
Query: 182 DAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ +H R+ RE F + + GG L+PV + GR ELLLIL++YW+ H+
Sbjct: 215 ESTYGVHIHEKREIREKRFTSTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHTEL 274
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ PIY+ + ++ + ++++ M D I S N F+ KH++ L D+
Sbjct: 275 HDIPIYYASSLAKKCMAVYQTYVSAMNDKIRNQIAIS--NPFIFKHISNLKGIDHFDDI- 331
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F +W +D KN V+ GTLA+ + ++P
Sbjct: 332 -GPCVVMASPGMMQSGLSRELFEKWCTDSKNGVVIAGYCVEGTLAKEVMSEP 382
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 179/376 (47%), Gaps = 37/376 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQTTQPLYTEQDHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW +HS
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITNILNRGGRALLPVFALGRAQELLLILDEYWGKHSEF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA----FLLKHVTL 287
YPIY+ + ++ + ++++ M D+I + F ETS + + K++
Sbjct: 281 QKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRLFRERMAEAETSGEAGAGGPWDFKYIRS 340
Query: 288 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ 347
L N D+ G ++LAS L+ G S ++F WA KN V+ T GT+AR +
Sbjct: 341 LKNLDRFDDV--GGCVMLASPGMLQNGVSRELFERWAPSDKNGVIITGYSVEGTMARQIM 398
Query: 348 ADPPPKAVKVTMSRRV 363
+ P+ ++ MSR +
Sbjct: 399 KE--PEQIQAVMSRSI 412
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 26/338 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V++SH H GALPY + +G P++ T P + + + D R+ N+
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---RKIAVDKKGEANF 120
Query: 118 HLSGKGEGI---VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174
S + VVA H L TV +I E V+Y DYN ++HL ++
Sbjct: 121 FTSQMIKDCMKKVVAVH-----LHQTV-QIKVGSESVVYTGDYNMTPDRHLGAAWIDK-C 173
Query: 175 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
RP +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +
Sbjct: 174 RPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF 233
Query: 234 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
W +L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 234 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAF 290
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
DN GP +V A+ L AG S IF +WA + KN+V
Sbjct: 291 ADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMV 326
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 178/377 (47%), Gaps = 38/377 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 43 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 102
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S S T+ Y++ +YH +
Sbjct: 103 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQDHLNTFSQIEAIDYHTTH 162
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 163 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKDVKIDVLIT 222
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW +H
Sbjct: 223 ESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEF 282
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 283 QKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGQGGPWDFKYIR 342
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L++G S ++F WA KN V+ T GT+AR +
Sbjct: 343 SLKNLDRFDDV--GGCVMLASPGMLQSGVSRELFERWAPSEKNGVIITGYSVEGTMARQI 400
Query: 347 QADPPPKAVKVTMSRRV 363
+ P + MSR +
Sbjct: 401 MQE--PDQIPAVMSRNL 415
>gi|340518710|gb|EGR48950.1| predicted protein [Trichoderma reesei QM6a]
Length = 962
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 182/424 (42%), Gaps = 96/424 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDETFSSDKLEELEKQVPTLSLILLTHATVS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS--------RRS--------- 107
HL A + K + L PV++T PV LG D Y S R+S
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETAYAY 125
Query: 108 --------------------------VTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 136
+ L YSQ + S G+ + + +GH
Sbjct: 126 SQTATTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY 241
A R +R E + I + GG VL+PVDS+ RVLE+ +LE W + N
Sbjct: 246 GADRTAQAGGRAKRDEHLLEMIKTCVSRGGTVLIPVDSSARVLEISYLLEHAWRTDAANR 305
Query: 242 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 280
+Y SST+ Y +S LEWM ++I + FE ++ A F
Sbjct: 306 DGVLKYSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKVNGGSEKKEGAPF 365
Query: 281 LLKHVTLLINKSE--------LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
K++ LL K++ ++N +++LAS ++E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIIKLLSQNIENGETHGRVILASDITMEWGFSKDLVKGLARDSRNLVI 425
Query: 333 FTER 336
TER
Sbjct: 426 LTER 429
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 121/334 (36%), Gaps = 101/334 (30%)
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDEDMDQA--AMHIGGDDGKLD-------------- 494
FP DDFGE+I P+DY+ +E D A + +D KL
Sbjct: 592 FPMAIRRKRTDDFGELIRPEDYLRAEEKEDDAVDGAQVATEDDKLGKKRKWDDVAKQAAG 651
Query: 495 ----------------------EGSASLILDA----------KPSKVVSNELTVQVKCLL 522
+G+A+ LD P ++ TV V +
Sbjct: 652 ANKRPNMNRTATADDAEALELADGAATDELDTVEDAEPEEPTGPCRLAYKTETVTVNLRV 711
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTP 576
ID+ G D RS+ ++ + P KL+LV G+ E T L C + V+TP
Sbjct: 712 AMIDFSGLHDKRSLNMLIPLIQPRKLILVAGTREETTALAADCRAALASDGDRSVDVFTP 771
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---------------- 620
++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 772 EVGTWVDASMDTNAWVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAHQATGSEQAH 831
Query: 621 ---------GKTENG------------------MLSLLP---ISTPAPPHKSVLVGDLKM 650
KTE L +LP IS +S+ VGDL++
Sbjct: 832 DHDDVANKRQKTEPASTSTAVALTNAADTAAMPTLDVLPANLISAARSAAQSLHVGDLRL 891
Query: 651 ADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
ADL+ + G EF G G L V +RK
Sbjct: 892 ADLRRAMQGAGHAAEFRGEGTLVVDGSVAVRKTA 925
>gi|402080824|gb|EJT75969.1| hypothetical protein GGTG_05894 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 974
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 177/428 (41%), Gaps = 99/428 (23%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E S L+ +DG LID GW++ D L+ L K T+ +LL+H
Sbjct: 5 SPLQGALSEATASQSLLELDGGVKVLIDVGWDETLDIEKLKELEKQVPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGLSA--PVFSTEPVYRLGLLTMYDQYLSRR----------------S 107
HL A + K L A PV++T+PV LG + D Y S S
Sbjct: 65 PHLSAFVHCCKHFPLFARIPVYATQPVIDLGRTLIQDLYSSTPLAATTIPDTSLAEAAFS 124
Query: 108 VTRLTYSQNYHLSGKG-------------------------------EGIVVAPHVAGHL 136
++ +S N+ L G+ + + +GH
Sbjct: 125 YSQPQFSNNFLLQAPTTEEIAKYFSLIQPLKYSQPHQPLASPFSPPLNGLTITAYNSGHS 184
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------------VLESFVRPAVLITDA 183
LGGT+W I E ++YAVD+N ++ G V+E +P LI A
Sbjct: 185 LGGTIWHIQHGLESIVYAVDWNLARDNVYAGAAWMGSGHGSGGAEVMEQLRKPTALICSA 244
Query: 184 YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY-- 241
+ + D + +T+ GG VL+P+DS+ RVLEL +LE W +
Sbjct: 245 RAGEGGLSRGARDQQLLDTMRRTVARGGTVLIPIDSSARVLELAYLLEHAWRSEASGVTE 304
Query: 242 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 279
+Y +STI KS EWM DSI + FE D
Sbjct: 305 AGALGTAKLYLAGRSVNSTIRLAKSMFEWMDDSIVQEFEAVADQGGKRTNGNTDGGRGRD 364
Query: 280 ---FLLKHVTLLINKSELD------NAPD--GPKLVLASMASLEAGFSHDIFVEWASDVK 328
F K++ +L K++++ + P+ K++LAS SLE GFS D+ A D +
Sbjct: 365 AGPFDFKYLRVLDRKAQVEKVLSQSSTPNELRGKVILASDTSLEWGFSKDVMARIADDSR 424
Query: 329 NLVLFTER 336
NLV+ TE+
Sbjct: 425 NLVILTEK 432
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+V+ V V + ++D+ G D RS+ ++ + P KL+LV GSA+ TE + C
Sbjct: 701 PAKLVTTSSAVTVNLRIAYVDFSGLHDRRSLAMLIPLIQPRKLILVAGSADETEAVADDC 760
Query: 566 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 625
++ VYTP + ++D + D A+ V+LSE L+ + ++ + I V A + T
Sbjct: 761 RRNAI-EVYTPPVGASVDASVDTNAWVVKLSEPLVKRLRWQTVRGLGIVTVTAHLTATPV 819
Query: 626 GMLSLLPISTPAP 638
SL P S+ AP
Sbjct: 820 AQKSLPPPSSTAP 832
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 186/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 386
Query: 361 RRVPL 365
+++PL
Sbjct: 387 QKLPL 391
>gi|71017515|ref|XP_758988.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
gi|46098766|gb|EAK83999.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
Length = 979
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 218/519 (42%), Gaps = 151/519 (29%)
Query: 15 NENP--LSYLVSIDGFNFLIDCGWNDHF----------------DPSLLQP--------- 47
E+P L+YL+ +D LIDCG + F S QP
Sbjct: 42 QEHPRALAYLLQMDDVRVLIDCGSTEDFLFHGTSSQSDDSADAEAESQPQPESSSMAQQR 101
Query: 48 ------------------LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP 89
L ++ASTID VLLSH HLG YA LGL V++T P
Sbjct: 102 QASDLDINHLKAAPLDTLLRQLASTIDLVLLSHSSLDHLGLYAYAHANLGLRCQVYATMP 161
Query: 90 VYRLGLLTMYDQYLSRRS-----------------------------VTRLTYSQNYHLS 120
V +G LT+ + + RS + + Y Q HL
Sbjct: 162 VQSMGKLTVLEAIQTWRSEVDIEKECTSASTRRCLATPDQVEDAFEEIKTVRYMQPTHLE 221
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL--------- 170
GK + + + AGH LGG VWKI + V+ A+D+N +E+HL+GT+L
Sbjct: 222 GKCASLTLTAYNAGHSLGGAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAAPG 281
Query: 171 ---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++ RP +LIT+ L R+ R+ D + T++AG ++L PVD++
Sbjct: 282 APGSGASASDAVRRPDLLITEIERGLVVNTRRKDRDAALIDLVHTTIQAGNSLLFPVDAS 341
Query: 221 GRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFET-- 274
R+LEL+++L+ +WA H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 342 ARLLELMVLLDQHWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANETIE 400
Query: 275 ----------SRDNA-------------FLLKHVTLLINKSELDNA--PDGPKLVLASMA 309
+ NA K+V + +D A D K+VLA
Sbjct: 401 ADKDTLPAKMQQRNARGGGLRPAAASSPLDFKYVKVFPTLQAMDEAIPQDQAKVVLAVPP 460
Query: 310 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------------------QA- 348
S+ G S + +A + ++V+ RG+ G+L R L QA
Sbjct: 461 SMTHGPSRKLLARFAQNPNDVVVLISRGEPGSLCRELWDAWNTNQSKGFSWSQGKLGQAV 520
Query: 349 DPPPKAVKVTMSRRVPLVGEELIAYEE----EQTRLKKE 383
+++ + +VPL G+EL A+ E E+ RL ++
Sbjct: 521 VASNTSLRFELKSKVPLEGDELRAHREAEQAERERLAQQ 559
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK---- 505
+FP E D FGEVI+ ++ + ++ A L E SA+L +AK
Sbjct: 675 LFPAIERKRRVDGFGEVIDVTRWLSRRRALEAAESAA---ADPLSE-SATLTAEAKRKQL 730
Query: 506 -----------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
P K ++ ++VQ+ C + FI+ G DGR++KT++ + P +L++V+G
Sbjct: 731 AAQEEARAAAVPCKFITQLVSVQLNCKVAFIEMCGLNDGRALKTLIPQLHPRRLIMVNGD 790
Query: 555 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
E + +K + + P+ E++ + +Y VQL E L+S + + ++E
Sbjct: 791 RETNADMLDVLDAIKSLTRDISAPRWLESVQIGQVTNSYTVQLGEGLLSRLELSRFEEFE 850
Query: 613 IAWVDAEV----GKTENGMLSLL 631
+A V A V G E G +++L
Sbjct: 851 VAHVRALVRRGMGDAEMGGVAML 873
>gi|254581424|ref|XP_002496697.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
gi|238939589|emb|CAR27764.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
Length = 835
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 205/843 (24%), Positives = 345/843 (40%), Gaps = 179/843 (21%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--- 70
N + +V D LID GW ++ S+ + S + ++ +LLS LGA
Sbjct: 14 NTIGTIVRFDNVTILIDPGWFSSKVSYEDSV-KYWSNLIPEVNIILLSQSSVDCLGAYTM 72
Query: 71 -----LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR-------------------- 105
LP+ + ++ V++T PV LG ++ +D Y SR
Sbjct: 73 LYHNFLPHFISRI----QVYATLPVTNLGRVSTFDLYASRGLVGPYDTNQIDVDDVERAF 128
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
+ L YSQ L K +G+ + + +G GG++W I+ E +IYA +N ++ L
Sbjct: 129 EHIESLKYSQLVDLRSKFDGLTLVAYNSGVSPGGSIWCISTYLEKLIYARRWNHTRDTIL 188
Query: 166 NGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
NG L + +RP+ +IT +P ++ F+D++ + L + G++L+PV
Sbjct: 189 NGASLLDGSGKPISTLLRPSAIITTFEKFGSPKPHARRMRCFKDSMKQALTSNGSILIPV 248
Query: 218 DSAGRVLELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
+ G L++L+ + D+ E+S N P+ ++Y + Y KS LEW+ S K++
Sbjct: 249 EMGGNFLDILVSVHDFLYENSKNKLYSQVPVILVSYSRGRALTYAKSMLEWLSSSAIKTW 308
Query: 273 ETSRDNA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWASDVK 328
E SRDN F L + EL N G K+ S ++ H +E A+ +
Sbjct: 309 E-SRDNRTPFDLGRRFHVATPEELTNY-SGSKICFVSQVDSLVDEVIKHLCQLERATIL- 365
Query: 329 NLVLFTERGQFGTLARML-------------QADPPPKAVKVTMS--RRVPLVGEELIAY 373
L FT+ G LA M + P + +T+ + PLV +EL Y
Sbjct: 366 -LPGFTQ-GYPSALATMYKKWEQASKQQNLEEGKPVSYSGHITLKNIKLDPLVNKELEHY 423
Query: 374 EEEQT-RLKKEEALKASLVKEEESKASL-----GPDN----------------------- 404
E+ T R + L A+L++E + S+ G N
Sbjct: 424 LEQVTERRDSRQELTATLIREAKKTNSIETFAGGAANGQPGALGLGGIGEGDFDDEEEED 483
Query: 405 NLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDF 463
NL G M+ D A P G + +I D ++ T MFPF + DD+
Sbjct: 484 NLIG--MLRDGTTA--------PTGKQAVEIPTDIYIQEGTPAKHRMFPFQPPRIKRDDY 533
Query: 464 GEVINPDDYIIKDED---------------------MDQAAMHIG---GDD-----GKLD 494
G +I+ I D+D MD + + DD K D
Sbjct: 534 GSIIDFSMLIPSDDDSSKTKRPSSEEIEEEKDPYDLMDPRRVSVKRSRKDDTKNNPSKND 593
Query: 495 EGSASL-ILDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
E S+ LDA P K + V VKC++ FI+ + D RS I + P K++L+
Sbjct: 594 ENWDSIEYLDAVKNPVKRTESSSKVNVKCMVTFINLDSLVDQRSATVIWPALKPKKILLL 653
Query: 552 HGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD- 610
G AEA L+ + + + I + + + + + +L + ++ + D
Sbjct: 654 -GPAEAQIESAMLTLRKRDIELTAMPLNKDIQFDTTIKSLDISVDPELDQLLKWQSISDG 712
Query: 611 YEIAWV-------DAEVGKT-----------ENGMLSLLPISTPAPPHK---SVLVGDLK 649
Y +A V + GK+ L L P+ T + H S+ +GD++
Sbjct: 713 YTVAHVIGKLVKEKPQAGKSQQQAQEQKQQLHRTRLVLEPLKTTSRHHHKSGSLSIGDVR 772
Query: 650 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 708
+A+LK L+++ + EF G G L V +RK+ + V++G E +Y
Sbjct: 773 LAELKRVLTAQRHRAEFKGEGTLVVDGQVAVRKINDG----------ETVVDGAPSELFY 822
Query: 709 KIR 711
+R
Sbjct: 823 LVR 825
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYIK-VSNISADEMLYTETDLEDSMEKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLARKCMAVYQTYINAMNDKIRKAINV--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + +P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMTEP 378
>gi|259148102|emb|CAY81351.1| Cft2p [Saccharomyces cerevisiae EC1118]
Length = 859
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 193/838 (23%), Positives = 321/838 (38%), Gaps = 197/838 (23%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 312
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 313 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 371
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 418
A++ + K+E K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRERNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 419 NASADVVEPHGG---------------------------RYRDILIDGFVPPS-TSVAPM 450
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 451 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 471
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 472 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 523
Y + D +++ G G A L +D SK ++ + VQ+KC ++
Sbjct: 597 GYNMSDPVSERSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTTSTVNVQLKCSVV 656
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 583
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 630
++ + + + L + + ++++ D Y +A V + K L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 631 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 35 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADQIDLLLISHFHLDHCGALPWFLQKTT 94
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S ++ Y++ N+H
Sbjct: 95 FKGRCFMTHATKAIYRW-LLSDYIK-VSNISTDQMLYTEADLEASMEKIEVINFHEEKDV 152
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G V+Y D++R++++HL + + VRP +LIT++
Sbjct: 153 GGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPT-VRPDILITES 211
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F I + + GG L+PV + GR ELLLIL++YW+ H
Sbjct: 212 TYGTHIHEKREDRESRFTGLIHEIVNRGGRCLIPVFALGRAQELLLILDEYWSLHPELHE 271
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ L + ++ G
Sbjct: 272 IPIYYASSLAQKCMAVYQTYINAMNDKIRR--QIAINNPFIFKHISSLKGIDQFEDV--G 327
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +++AS +++G S ++F W +D KN + GTLA+ + ++P
Sbjct: 328 PCVIMASPGMMQSGLSRELFEAWCTDPKNGCIIAGYCVEGTLAKHVLSEP 377
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMEKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLARKCMAVYQTYINAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 157/327 (48%), Gaps = 30/327 (9%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIV 127
++ T P V + G + + + + ++ + + +
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 179
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 180 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 239
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 240 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 294
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 295 TPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 172/368 (46%), Gaps = 36/368 (9%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHFDPSLLQPLSK---VASTID 56
++VTPL + LV+I G N ++DCG +ND + +SK ID
Sbjct: 2 QIKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN 116
V++SH H G+LPY + LG P+++T P + + + D + SV R +
Sbjct: 62 LVIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLED--YRKISVERRGVEEK 119
Query: 117 YHLSGKG--------------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
S + E + P+ AGH+LG ++ I + ++Y D
Sbjct: 120 DMFSSQQIKDCMMKVTPCALEETIMIEEDFEIRPYYAGHVLGAAMFYIRVGQQSILYTGD 179
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
YN ++HL G+ +RP +LIT++ A + ++ RE + +S+ +R GG VL+
Sbjct: 180 YNMTPDRHL-GSARCDKLRPDLLITESTYATTIRESKRWRERDMLNQVSECVRNGGKVLI 238
Query: 216 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
PV + GR EL L+L+ +W L PIYF ++ Y K ++ W I +F
Sbjct: 239 PVFALGRAQELCLLLDAFWERTGLKVPIYFSAGLTEKANLYYKMYISWTNQKIKDTF--V 296
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
+ N F +H+ +++ +D GP ++ A+ L G S ++F +WA KNLV+
Sbjct: 297 KRNVFDFQHIQPF-DRAFIDRP--GPMVLFATPGMLHGGLSMEVFKKWAPSDKNLVIMPG 353
Query: 336 RGQFGTLA 343
GTL
Sbjct: 354 YCVAGTLG 361
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 157/327 (48%), Gaps = 30/327 (9%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIV 127
++ T P V + G + + + + ++ + + +
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 179
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 180 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 239
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 240 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 294
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 295 TPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 41/457 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N + DCG +ND F D + ++ ID
Sbjct: 3 IRVRPLGAGQDVGRSCLLVSIGGKNIMFDCGMHMGYNDARRFPDFASIKRTGPYTDVIDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GA+ + + G P++ T P + + + D + R+ T S
Sbjct: 63 VIVSHFHLDHCGAIVHFSEVCGYDGPIYMTHPTKAICPILLEDYRKLTVERKGETNFFTS 122
Query: 115 QNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
N K + I + + AGH+LG ++ + E V+Y D+N
Sbjct: 123 ANIKACMKKVIAVNLHESVRVDDEIEIKAYYAGHVLGAAMFHVRVGSESVVYTGDFNMTP 182
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F I + + GG VL+PV +
Sbjct: 183 DRHLGAAWIDR-CRPDLLITESTYATTIRDSKRNREGEFLRKIHECVEQGGKVLIPVFAL 241
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL +++E YW L P+YF +++ +Y K F+ W I ++F N F
Sbjct: 242 GRAQELCILVETYWERLGLTVPVYFSAGLTAKANNYYKLFITWTNQKIKRTF--VERNMF 299
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ +++ LDN GP ++ A+ L AG S D F +WA + KN+V+ G
Sbjct: 300 EFKHIKPF-DRAFLDNP--GPMVLFATPGMLHAGMSLDAFRKWAPNDKNMVILPGYCVAG 356
Query: 341 T-----LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ---TRLKKEEALKASLVK 392
T LA Q + P +A + + R+ + A+ + + ++ E LV
Sbjct: 357 TVGNKVLAGHKQIEMPDRA-RTVIDVRLSVQNLSFSAHADAKGIVQLIRHAEPRNVMLVH 415
Query: 393 EEESKASLGPDNNLS--GDPMVIDANNANASADVVEP 427
E++K + +S G P AN A + + P
Sbjct: 416 GEKAKMAFLKAKIISEIGIPCFDPANGATVTIETAHP 452
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 171/343 (49%), Gaps = 36/343 (10%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
G+N L + D DP +D +L+SH H G LP+ +++ VF
Sbjct: 44 GYNGLDSLPFIDEIDPG----------EVDLLLISHFHLDHCGGLPWFLEKTHFKGRVFM 93
Query: 87 TEP---VYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKGEGIVVAP 130
T P +YR LL Y + +S S ++ Y++ ++H + GI
Sbjct: 94 THPTKAIYRW-LLADYIK-VSNISADQMLYTEKDLEKSMDKIETMHFHQEKEVSGIKFWA 151
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
+ AGH+LG ++ I G +++Y D++R++++HL + + + P VLI ++ H
Sbjct: 152 YNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLMSAEIPN-ISPDVLIMESTYGTHVH 210
Query: 191 PPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R+QRE F I + GG L+PV + GR ELLLIL++YW +H + P+Y+ +
Sbjct: 211 EKREQREKRFTSTIHNIISRGGRCLIPVFALGRAQELLLILDEYWNQHPELQDVPVYYAS 270
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + ++++ M + I + S N F+ KH++ L D+ GP +VLAS
Sbjct: 271 SLAKKCMAVYQTYISAMNEKIRRQISIS--NPFVFKHISNLKGIDSFDDI--GPSVVLAS 326
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+++G S ++F W +D +N V+ GTLA+ L ++P
Sbjct: 327 PGMMQSGLSRELFETWCTDPRNGVIIAGYCVEGTLAKELMSEP 369
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 30/365 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTI 55
+ + +TPL + L+S+ G N ++DCG + + D S + + +
Sbjct: 2 SEITITPLGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFL 61
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------QYL 103
D V++SH H GALP+ + +G + P++ T P + + + D +
Sbjct: 62 DCVIISHFHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVDKKGEQNFF 121
Query: 104 SR---RSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
S+ R + N H + K + + + + AGH+LG ++ I ++Y DYN
Sbjct: 122 SQGMIRDCMKKVIPCNLHETIKVDSELEIKAYYAGHVLGAAMFHIKVGHISIVYTGDYNM 181
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+P
Sbjct: 182 TPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLNKVHDCIERGGKVLIPAF 240
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
+ GR EL ++LE YW +L PIYF ++ +Y K F+ W I +F N
Sbjct: 241 ALGRAQELCILLETYWERMNLKCPIYFAAGLTEKATNYYKMFITWTNQKIRNTF--VDHN 298
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F KH+ +++ +DN GP +V A+ L AG S IF +WA +N+V+
Sbjct: 299 MFDFKHIKPF-DRAYIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPFEENMVIMPGYCV 355
Query: 339 FGTLA 343
GT+
Sbjct: 356 SGTVG 360
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 182/351 (51%), Gaps = 30/351 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D + +SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLFISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR +L+ Y + +S S ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-MLSDYIK-VSNISTDQMLYTEADLEASMEKIETINFHEERDV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G ++Y D++R++++HL + + ++P VLIT++
Sbjct: 154 MGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPA-MKPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW+++
Sbjct: 213 TYGTHIHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPELQE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
+PIY+ + ++ + ++++ M D I + + + +N F+ +H++ N +D+ D
Sbjct: 273 FPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAVNNPFVFRHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 328 GPCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGYCVEGTLAKTILSEP 378
>gi|116203607|ref|XP_001227614.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
gi|88175815|gb|EAQ83283.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
Length = 956
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 184/427 (43%), Gaps = 99/427 (23%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E+ S L+ +DG LID GW++ FD L+ L K T+ +LL+H
Sbjct: 5 SPLQGALSESTASQSLLELDGGVKVLIDVGWDEAFDVEKLRELEKQIPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T PV LG D Y S
Sbjct: 65 DHLGAYAHCCKNFPLFTRVPVYATRPVIDLGRTLTQDLYASTPVAATTISPTSLAEASYS 124
Query: 106 ------------------RSVTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGH 135
+ R L YSQ + G+ + + +GH
Sbjct: 125 YAQTSSADHKLLLQPPTPEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 181
LGGT+W I E ++YAVD+N+ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFSGAAWLGGGHGGAGGAEVIEQLRKPTALVC 244
Query: 182 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-AEHSLN 240
+ P ++ E ++I + GG VL+PVDS+ RVLEL LE W AE + +
Sbjct: 245 SSRTPETALPRGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYFLEHAWRAEIAKD 304
Query: 241 YPIYFLT--YVSSSTIDYV----KSFLEWMGDSITKSFET----------------SRDN 278
++ T Y++ TI+ +S LEWM DSI + FE
Sbjct: 305 NEVFKSTKAYLAGRTINSTMRNARSMLEWMDDSIVREFEAVAGGQRGNGGSGGGKGKDAG 364
Query: 279 AFLLKHVTLLINKSELDNA---------PDGPKLVLASMASLEAGFSHDIFVEWASDVKN 329
F K++ LL K++++ P G ++++A+ +SLE GFS ++ A D +N
Sbjct: 365 PFDFKYLRLLERKAQVERVLQQAADASEPKG-RVIVATDSSLEWGFSKEVMRAIAGDPRN 423
Query: 330 LVLFTER 336
LV+ TE+
Sbjct: 424 LVILTEK 430
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 118/316 (37%), Gaps = 82/316 (25%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEG------------- 496
MFP D+FGE+I P++Y+ +E D D + D+G
Sbjct: 591 MFPTVMRRKRNDEFGELIRPEEYLRAEEREDAEGQDERQDGNRHDQGLGKKRKFDDVGAS 650
Query: 497 --------------------SASLILDAK-----------------PSKVVSNELTVQVK 519
A+ + D P+K+V TV V+
Sbjct: 651 KGAPGANKRSQGKRAASDEPEAAALSDGHAGDELDELEDEEEAVIGPAKLVVTSQTVSVQ 710
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH------- 572
+ F+D+ G D RS+ ++ + P KL+LV G+ E T L C K +
Sbjct: 711 LRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVAGAEEETLALAADCKKLLSAQLASGSSQ 770
Query: 573 ----VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE--------IAWVDAEV 620
V+TP + T++ + D A+ V+L++ + + ++ E A D +
Sbjct: 771 SAIDVFTPAMGATVNASVDTNAWVVKLADPFVKRLKWQNRQKLEGTPATETPAAATDGTL 830
Query: 621 GKTE---NGMLSLLPISTPAPP---------HKSVLVGDLKMADLKPFLSSKGIQVEFAG 668
T N LP PP + + VGDL++ADL+ + G + EF G
Sbjct: 831 TTTNSSPNNNKPTLPTLDVLPPTLASAVRSAAQPLHVGDLRLADLRRAMLGAGHRAEFRG 890
Query: 669 -GALRCGEYVTIRKVG 683
G L V +RK
Sbjct: 891 EGTLLIDGTVAVRKTA 906
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNRGGRSLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P VTMS
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEE---IVTMS 385
Query: 361 -RRVPL 365
+++PL
Sbjct: 386 GQKLPL 391
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEDSMEKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LIT++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILITES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLARKCMAVYQTYINAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + +P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGYCVEGTLAKHIMTEP 378
>gi|322700762|gb|EFY92515.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium acridum CQMa 102]
Length = 960
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 181/426 (42%), Gaps = 98/426 (23%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+ GW++ FD L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKVLVGLGWDETFDVRKLEELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS--------RRS--------- 107
HL A + K L P ++T PV LG + D Y S R+S
Sbjct: 66 HLAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLYSSTPAASTTIRQSSLSEIAYAY 125
Query: 108 --------------------------VTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 136
+ L YSQ + G+ + + +GH
Sbjct: 126 TQTAATAQNLLLQSPTPDQIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 238
A + R +R E + I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GAQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWRADAASD 305
Query: 239 ---LNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 280
LN +Y SST+ Y +S LEWM D+I + FE +D F
Sbjct: 306 NGVLNSAKLYLAGRNMSSTMRYARSMLEWMDDNIVQEFEAFAEGQRKANGTVEKKDGGPF 365
Query: 281 LLKHVTLLINKSELDNAPD----------GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
K++ LL K+++ D +++LAS AS+E GFS D+ E A D NL
Sbjct: 366 DFKYLRLLERKAQVSKLLDQVASAQGEAAKGRVILASDASMEWGFSKDVLRELAKDPNNL 425
Query: 331 VLFTER 336
V+ T+R
Sbjct: 426 VILTDR 431
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 127/328 (38%), Gaps = 96/328 (29%)
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDE-DMDQA-AMHI---------------------- 486
FP DDFGE+I P+DY+ +E D D A H+
Sbjct: 595 FPVAIRRKRNDDFGELIRPEDYLRAEEKDEDNADGSHLTLDDDKLGKKRKWDDVVKGANG 654
Query: 487 -------------GGDDGKLDEGSASLILD----------AKPSKVVSNELTVQVKCLLI 523
GDDG +G A+ LD P K+V TVQ K +
Sbjct: 655 PNKRPQPGKGAAEDGDDGIAADGHAADDLDDVEDTEPEEPTGPCKLVYTTETVQAKLRIG 714
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQ 577
F+D+ G D RS+ ++ + P KL+LV G+ E T L + C + V+TP
Sbjct: 715 FVDFSGLHDRRSLDMLIPLIQPRKLILVGGNHEETMSLAEDCRAALGMDGDKAVDVFTPS 774
Query: 578 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------- 620
+ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 775 VGVWVDASVDTNAWVVKLADPLVKKLKWQNVRGLSIVTISGQLLATNTTAEATEPSDEDS 834
Query: 621 ----GKTE---------------NGMLSLLP------ISTPAPPHKSVLVGDLKMADLKP 655
KTE +G+L +L +S + + VGDL++ADL+
Sbjct: 835 SNKRQKTEPSTAVALTSTALANSSGVLPVLDVIPSNLVSAARTAAQPLHVGDLRLADLRR 894
Query: 656 FLSSKGIQVEFAG-GALRCGEYVTIRKV 682
+ G EF G G L V++RK
Sbjct: 895 AMQGSGHGAEFRGEGILVIDGSVSVRKT 922
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 194/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ ++AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTVLSE--PEEITTLSGQKLPL 390
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 194/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ ++AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHVHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKAVLSE--PEEITTLSGQKLPL 390
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 169/388 (43%), Gaps = 64/388 (16%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
+ VTPL + L+SI G N ++DCG + F D S + + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYD 100
V++SH H GALPY + +G S PV+ T P V R G +
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 101 QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ R + ++ + + + + + AGH+LG +++I + V+Y DYN
Sbjct: 123 SAMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMT 182
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-----FQDAISK---------- 205
++HL L+ RP +LIT++ A + ++ RE D I K
Sbjct: 183 PDRHLGAAWLDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFX 241
Query: 206 -TLR-------------------AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYF 245
T+R GG VL+PV + GR EL ++LE YW +L PIYF
Sbjct: 242 TTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPIYF 301
Query: 246 LTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVL 305
++ +Y K F+ W I K+F + N F KH+ +++ +DN GP +V
Sbjct: 302 AVGLTEKATNYYKMFITWTNQKIRKTF--VQRNMFDFKHIKPF-DRAFIDNP--GPMVVF 356
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLF 333
A+ L AG S IF +WA N+V+
Sbjct: 357 ATPGMLHAGLSLQIFKKWAPFEANMVIM 384
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 194/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ ++AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKAVLSE--PEEITTLSGQKLPL 390
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 194/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ ++AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTVLSE--PEEITTLSGQKLPL 390
>gi|400602286|gb|EJP69888.1| RNA-metabolising metallo-beta-lactamase [Beauveria bassiana ARSEF
2860]
Length = 962
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 177/425 (41%), Gaps = 96/425 (22%)
Query: 8 TPLSGVFNEN-PLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E+ L+ +DG L+ GW++ FD + L+ L K T+ +LL+H
Sbjct: 5 SPLQGAQSESLATQSLLELDGGVKILVGLGWDESFDVAKLEELEKQVPTLSLILLTHATA 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRS---------------- 107
HL A + K + L PV++T PV LG D Y S +
Sbjct: 65 PHLAAYAHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIPQAALSASAYA 124
Query: 108 ---------------------------VTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 135
+ L YSQ + G+ + + AGH
Sbjct: 125 YAQTATTAQNLLLQSPTPDEIARFFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNAGH 184
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDA 183
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKPTALICSS 244
Query: 184 YNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 240
A N R +R E + I + GG VL+PVDS+ RVLEL +LE W S +
Sbjct: 245 RGAERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHAWRTDSAS 304
Query: 241 -------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA--------- 279
+Y +ST+ Y +S LEWM DSI + FE R N
Sbjct: 305 ATGVLKAAKLYLAGRNMASTMRYARSMLEWMDDSIVQEFEAFAEGQKRTNGNSDKKVGGP 364
Query: 280 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
F + + LL K+++ +N +++LAS ++ GFS D+ ASD N+V
Sbjct: 365 FDFRFMRLLDRKAQIAKLLTTAVNNGESRGRVILASDTCMDWGFSKDLLRGLASDANNVV 424
Query: 332 LFTER 336
+ T++
Sbjct: 425 ILTDK 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 68/238 (28%)
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------- 481
FP DDFGE+I P+DY+ +E D+D
Sbjct: 593 FPVAVRRKRNDDFGELIRPEDYLRAEEKEEDDVDGPNTANDDENLGKKRKWDDVQGTSAS 652
Query: 482 -------------AAMHIGGDDGK---LDEGSASLILDAK----------PSKVVSNELT 515
A GG+DG + EG LDA P K+V T
Sbjct: 653 KRSQLDKGVASGGAFAGDGGEDGNTTGMQEGFEPDELDAAEDVDGDEPDGPCKLVYTMET 712
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------ 569
V V+ + ++D+ G D RS+ ++ + P K++LV G+ E T L Q C +
Sbjct: 713 VAVRLRIAYVDFSGLHDKRSLHMLIPLIQPRKIILVAGTREETLALAQDCRAILGADAAS 772
Query: 570 -------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 620
VYTP++ +D + D A+ V+L++ L+ + ++ + I V ++
Sbjct: 773 GEKGGAGGADVYTPEVGAVVDASVDTSAWVVKLADALVKKLKWQNVRGLGIVTVSGQL 830
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A TMS
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA---TMS 378
Query: 361 -RRVPL 365
+++PL
Sbjct: 379 GQKLPL 384
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 194/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ ++AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKAVLSE--PEEITTLSGQKLPL 390
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 168/363 (46%), Gaps = 30/363 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LV+I N + DCG +ND D + + + +D
Sbjct: 4 IKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + P++ T P + + + D + R+ S
Sbjct: 64 VIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVDRKGEKNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + K + + + + AGH+LG ++ + E V+Y DYN
Sbjct: 124 QMIKDCMKKVKAINLHQTVKVDDDLEIKAYYAGHVLGAAMFLVKVGCESVLYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLTKVHECVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW +L PIYF T ++ Y K F+ W I ++F + N F
Sbjct: 243 GRAQELCILLETYWDRMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRRTF--VQHNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ +++ +DN P +V A+ L G S IF +WA D KN+V+ G
Sbjct: 301 EFKHIKPF-DRALIDNP--NPMVVFATPGMLHGGLSLQIFKKWAPDDKNMVILPGYCVAG 357
Query: 341 TLA 343
T+
Sbjct: 358 TVG 360
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + + N+ + VK + ++ + AD + I ++ H P ++LVHG A
Sbjct: 363 ILSGQRTVELENKQIIDVKLAVEYMSFSAHADAKGIMQLIKHAEPENVMLVHGEASKMNF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTS 586
L Q + + Y P+ ET+ + +
Sbjct: 423 LMQKIEQEIGTPCYMPKNGETVKIRA 448
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 187/366 (51%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVHAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A TMS
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA---TMS 378
Query: 361 -RRVPL 365
+++PL
Sbjct: 379 GQKLPL 384
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 185/377 (49%), Gaps = 46/377 (12%)
Query: 4 SVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCG------------WNDHFDPSLLQPLSK 50
++Q+TPL G NE S L++ + DCG + D DP
Sbjct: 23 TLQITPL-GAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDPR------- 74
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLS--APVFSTEP---VYRLGLL--------- 96
+ID +L++H H ALPY +++ + A VF T P +Y+ L
Sbjct: 75 ---SIDLILITHFHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSDFVRVSSNE 131
Query: 97 -TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+Y + R++ R+ + +YH GI + AGH+LG ++ + G V+Y
Sbjct: 132 DVLYSEQDLSRTMKRIE-TLDYHQEMNWNGIRFWAYNAGHVLGAAMFLVEIAGVRVLYTG 190
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLL 215
D++R++++HL + F +++ Y ++P + + F +++ +R GG VLL
Sbjct: 191 DFSRQEDRHLKEAEIPPFPPDIIIVESTYGVQVHEPRKIREARFTQKVAEIVRRGGRVLL 250
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLILE+YW H + PIY+ + ++ + ++++ M D+I K +E
Sbjct: 251 PVFALGRAQELLLILEEYWEAHPDLQDIPIYYASSLAKRCMSVYQTYINMMNDNIRKRYE 310
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
S N F K+V + N + D++ GP + +AS L++G S ++ W +D +N ++
Sbjct: 311 VS--NPFAFKYVLNVKNIQDFDDS--GPCVFMASPGMLQSGLSRELCERWCTDRRNGIIL 366
Query: 334 TERGQFGTLARMLQADP 350
GTLA+ + ++P
Sbjct: 367 PGYSVEGTLAKHILSEP 383
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 35/355 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N ++DCG + + D S + + +D
Sbjct: 4 IKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V+++H H G+LP+ + +G P++ T P + + + D R+ T +N+
Sbjct: 64 VIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDY---RKVQTEFKGDKNF 120
Query: 118 HLSGKGEGI---VVAPHV----------------AGHLLGGTVWKITKDGEDVIYAVDYN 158
S + V+A ++ AGH+LG +++I E V+Y D+N
Sbjct: 121 FTSQMIKNCMKKVIAINIHEKIDVDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL +E ++P +LI+++ A + ++ RE F + T+ GG VL+PV
Sbjct: 181 TTPDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVLIPV 240
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPI+F ++ Y + F+ W + I ++F
Sbjct: 241 FALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTF--VER 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
N F KH+ +S +++ GP ++ ++ L G S +F +W SD KNL++
Sbjct: 299 NMFDFKHIRPF-EQSYIESP--GPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLII 350
>gi|406865774|gb|EKD18815.1| RNA-metabolising metallo-beta-lactamase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1331
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 173/414 (41%), Gaps = 104/414 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--PV 84
G LID GW++ FD + L+ L K T+ +LL+H H+ A + K L + PV
Sbjct: 26 GVKVLIDVGWDETFDVAKLKELEKQVPTLSIILLTHATVSHIAAFAHCCKHFPLFSRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYSQNYHLSGKGE----------- 124
++T PV LG + + Y S +++ +Y+ + +S +
Sbjct: 86 YATLPVISLGRTLVQNIYASTPLSATIIPHSALSEASYAYSQTISANQDANILLQPPTSE 145
Query: 125 ------------------------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
G+ + + AGH LGGT+W I E ++YA
Sbjct: 146 EIASYFALIHPLKYSQPHQPLPSPFSPPLNGLAITAYNAGHTLGGTIWHIQHGLESIVYA 205
Query: 155 VDYNRRKEK------------HLNGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMF 199
VD+N+ +E V+E +P LI + + P R +R E+
Sbjct: 206 VDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSSRGGERHALPGGRAKRDELL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA-------EHSLNYPIYFLTYVSSS 252
+ I ++ GG VL+P DS+ RVLEL +LE W H +Y + +
Sbjct: 266 LEMIKTSVSQGGIVLIPTDSSARVLELAYLLEHVWRTESKDEDSHLRGAKLYLASRNIGA 325
Query: 253 TIDYVKSFLEWMGDSITKSFE--------------------TSRDNAFLLKHVTLLINKS 292
T+ Y +S LEWM D+I + FE +S F KH+ LL K
Sbjct: 326 TMRYARSMLEWMDDAIIREFEANAGINQKETGSKAAGDAKGSSDGGPFDFKHLRLLERKG 385
Query: 293 ELD----------NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
++D + K++LAS ASLE GFS DI A D +NL++ TE+
Sbjct: 386 QIDRIMGQTDIDRHGRSIGKVILASDASLEWGFSRDILKAVADDTRNLIILTEK 439
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 144/374 (38%), Gaps = 116/374 (31%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYI-------IKDEDM-DQAAMHIGGD------------ 489
MFP DDFGE+I P+D++ + +DM +Q H D
Sbjct: 601 MFPLAVRRKRVDDFGELIRPEDFLRAEERDEVNGQDMRNQPNKHDTRDTLGKKRKWEEHS 660
Query: 490 -DGKL-----------------------------------DEGSASLILDAKPSKVV--S 511
+G L DE S L+ ++ P+KVV S
Sbjct: 661 SNGHLIVNEFNKRKQKNRNQRDSPEAGEISPGPEDQQSEDDEDSGDLLAESSPAKVVFTS 720
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
LT+ V+ + F+D+ G D RS++ +L + P KL+LV G + T L C K +
Sbjct: 721 ENLTLNVR--IAFVDFAGLHDKRSLQMLLPLIQPRKLILVGGMKDETLALAGDCRKLLKS 778
Query: 572 H----VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------- 620
VYTP+I +D + D A+ V+L+ L+ + ++K+ D IA V A +
Sbjct: 779 ESTIDVYTPEIGTIVDASVDTNAWAVRLTSALVKQLTWQKVKDLRIATVTARLETIADAL 838
Query: 621 ----------------------------------GKTENGMLSLLPISTPAPPHKSVL-- 644
+TE L +LP S A +SV
Sbjct: 839 NPDDESSNKKQKLLREGDEEESDDTKKDLVSASSAETELPTLDVLP-SNMASATRSVAQP 897
Query: 645 --VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
VGDL++ DL+ + + EF G G L V +RK G G + I +
Sbjct: 898 LQVGDLRLPDLRKLMLAASHTAEFKGEGTLLIDSTVIVRKTGT-----GRIEVESIGLAT 952
Query: 702 PLCEDYYKIRAYLY 715
+Y +++ +Y
Sbjct: 953 GYGSSFYAVKSMIY 966
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 157/327 (48%), Gaps = 30/327 (9%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIV 127
++ T P V + G + + + + ++ + + +
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 179
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 180 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERVNLKAPIYFS 239
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 240 TGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 294
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 295 TPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 169/355 (47%), Gaps = 35/355 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + LVSI G N ++DCG + + D S + + +D
Sbjct: 59 IKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLDC 118
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V+++H H G+LP+ + +G P++ T P + + + D R+ T +N+
Sbjct: 119 VIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDY---RKIQTEFKGDKNF 175
Query: 118 HLSGKGEGI---VVAPHV----------------AGHLLGGTVWKITKDGEDVIYAVDYN 158
S + V+A ++ AGH+LG +++I E V+Y D+N
Sbjct: 176 FTSQMIKNCMKKVIAINIHEKIDIDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFN 235
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL +E ++P +LI+++ A + ++ RE F + T+ GG VL+PV
Sbjct: 236 TTPDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVLIPV 295
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L YPI+F ++ Y + F+ W + I ++F
Sbjct: 296 FALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTF--VER 353
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
N F KH+ + ++P GP ++ ++ L G S +F +W SD KNL++
Sbjct: 354 NMFDFKHIRPF--EQSYTDSP-GPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLII 405
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 193/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y+
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTDAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + KT++ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVQQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTILSE--PEEITTLSGQKLPL 390
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 183/391 (46%), Gaps = 38/391 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVAS 53
+ + VTPL + L++I N ++DCG + + D S + +
Sbjct: 3 ISNRIIVTPLGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITD 62
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------Q 101
ID V++SH H GAL Y + LG P++ T P + + + D +
Sbjct: 63 IIDCVIISHFHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDMRKHLVEYEEEAK 122
Query: 102 YLS----RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
Y + R + ++T + + + I + + AGH+LG ++ I + V+Y D+
Sbjct: 123 YFTSSAIRDCMKKVTAVNLHEVVTVKDDIELKAYYAGHVLGAAMFYIKVGNDSVVYTGDF 182
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
+ ++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+P
Sbjct: 183 SMTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKNVHECIDRGGKVLIP 241
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+ + GR EL ++++ YW L P+YF ++ Y K F+ W + ++F +
Sbjct: 242 IFALGRAQELCILIDTYWDRMGLKVPVYFAAGLTEKANSYYKMFITWTNQKVRQTF--VQ 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F KH+ +K+ + N GP +V A+ L AG S +IF +WA D KN+++
Sbjct: 300 RNMFDFKHIKPF-DKTYMHNP--GPMVVFATPGMLHAGLSLNIFKKWAPDEKNMLIVPGY 356
Query: 337 GQFGTL-------ARMLQADPPPKAVKVTMS 360
GT+ ++ ++A+ P K + V MS
Sbjct: 357 CVSGTVGNKVLSGSKKIEAE-PNKFIDVKMS 386
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
S S ++A+P+K + +++V+ ++ + ADG+ I ++ + P ++LVHG E
Sbjct: 368 SGSKKIEAEPNKFIDVKMSVE------YLSFSAHADGKGIIQLIKNCEPQNVLLVHGEEE 421
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQLSEKLMSNVL 604
+ L+ ++ + Y P ET+++ T+++ + +S KL+ +L
Sbjct: 422 KMKFLRAKIMQEFNINCYMPANGETVEIETANI--HTFNMSTKLVKEIL 468
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 103 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 162
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 163 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 220
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 221 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 279
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 280 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 339
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 340 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 395
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 396 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 453
Query: 361 RRVPL 365
+++PL
Sbjct: 454 QKLPL 458
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 165/361 (45%), Gaps = 33/361 (9%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
+ DCG + F PL T+D L++H H A+PY +++ +F
Sbjct: 23 TVMFDCGIHPAFKGMDSLPLLDEIDIDTVDVALITHFHLDHCAAVPYLLRKTRFKGRIFM 82
Query: 87 TEPV----YRL--------------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVV 128
T P Y L L D S + + + + Q ++G + +
Sbjct: 83 THPTKAIYYSLLRDLAKGSKHSSEEALFNEDDLEASMQRIEVVDFYQTIEVAG----MQI 138
Query: 129 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188
P+ AGH+LG ++ + G +Y DY+R ++HL + V+P ++I ++
Sbjct: 139 TPYRAGHVLGAAMFLVEVAGCRCLYTGDYSRLPDRHLPAADIPP-VKPHIVIVESTYGTS 197
Query: 189 NQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIY 244
PR QRE + D I T+ GG V++PV + GR ELLL+L++YW H PIY
Sbjct: 198 RHLPRLQREQLLLDTIRNTINRGGRVIMPVVALGRAQELLLLLDEYWEAHKSELSGIPIY 257
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
+ + S + ++++E + D I + F N F +HV L N + + GP ++
Sbjct: 258 QASSMMSKALGVYQTYVESLNDDIKRVFHER--NPFKFRHVQTLKNPAHFISDYSGPCVI 315
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 364
+A+ + L++G S D F W D +N + + GTLA+ + P ++ RRVP
Sbjct: 316 MATPSGLQSGASRDFFEAWCEDSRNTCIICDFAVQGTLAKEILGG--PSSITTREGRRVP 373
Query: 365 L 365
L
Sbjct: 374 L 374
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 187/367 (50%), Gaps = 34/367 (9%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G ++DCG H S L L V A ID +L+SH H GALP+ +++
Sbjct: 42 ILEFKGKRIMLDCGI--HPGMSGLDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQK 99
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSG 121
F +T+ +YR LL Y + +S ++ YS+ N+H
Sbjct: 100 TTFKGRCFMTHATKAIYRW-LLADYIK-VSNIGTEQMLYSETDLEASMEKIETINFHEEK 157
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
+ GI + AGH+LG ++ I G V+Y D++R++++HL + + + P VLI
Sbjct: 158 EVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN-IHPDVLII 216
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ H R++RE F + + GG L+PV + GR ELLLIL++YW+ H
Sbjct: 217 ESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPEL 276
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ PIY+ + ++ + ++++ M + I + + + +N F+ KH++ L + ++
Sbjct: 277 HDIPIYYASSLAKKCMAVYQTYVNAMNERIRR--QITINNPFVFKHISNLKSIEHFEDV- 333
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVT 358
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 334 -GPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSE--PEEISTM 390
Query: 359 MSRRVPL 365
+ +++PL
Sbjct: 391 VGQKLPL 397
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 12 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 71
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 72 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 129
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 130 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 188
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 189 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 248
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 249 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 304
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 305 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 362
Query: 361 RRVPL 365
+++PL
Sbjct: 363 QKLPL 367
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETVLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 66 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 125
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 126 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 183
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 184 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 242
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 243 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 302
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 303 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 358
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 359 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 416
Query: 361 RRVPL 365
+++PL
Sbjct: 417 QKLPL 421
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 91 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 150
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 151 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 208
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 209 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 267
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 268 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 327
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 328 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 383
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 384 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 441
Query: 361 RRVPL 365
+++PL
Sbjct: 442 QKLPL 446
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 181/351 (51%), Gaps = 30/351 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D + +SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLFISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR +L+ Y + +S S ++ Y++ N+H
Sbjct: 96 FKGRCFMTHATKAIYRW-MLSDYIK-VSNISTEQMLYTEADLEASMEKIETINFHEERDV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G ++Y D++R++++HL + + ++P VLIT++
Sbjct: 154 MGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPT-MKPDVLITES 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW+++
Sbjct: 213 TYGTHIHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPELQE 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ +H++ N +D+ D
Sbjct: 273 IPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAVNNPFVFRHIS---NLKGIDHFEDI 327
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F W SD KN V+ GTLA+ + ++P
Sbjct: 328 GPCVVMASPGMMQSGLSRELFETWCSDPKNGVIIAGYCVEGTLAKTVLSEP 378
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 62 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 121
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 122 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 179
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 180 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 238
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 239 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 298
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 299 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 354
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 355 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 412
Query: 361 RRVPL 365
+++PL
Sbjct: 413 QKLPL 417
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 26 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 85
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 86 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADEMLYAETDLEESMDKIETINFHEVREV 143
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LI ++
Sbjct: 144 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILIIES 202
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 203 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 262
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 263 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 318
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 319 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 368
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 16 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 75
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 76 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 133
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 134 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 192
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 193 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 252
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 253 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 308
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 309 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 366
Query: 361 RRVPL 365
+++PL
Sbjct: 367 QKLPL 371
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 33 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 92
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 93 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 150
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 151 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 209
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 210 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 269
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 270 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 325
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 326 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 383
Query: 361 RRVPL 365
+++PL
Sbjct: 384 QKLPL 388
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|346327110|gb|EGX96706.1| cleavage and polyadenylylation specificity factor, putative
[Cordyceps militaris CM01]
Length = 1024
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 179/432 (41%), Gaps = 96/432 (22%)
Query: 1 MGTSVQVTPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAV 58
+ T PL G +E+ S L+ +DG L+D GW++ FD + L+ L K T+ +
Sbjct: 32 IATMFTFCPLQGAQSESLASQSLLELDGGVKVLVDLGWDESFDVAKLEELEKQVPTLSLI 91
Query: 59 LLSHPDTLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRS--------- 107
LL+H H+ A + K + L PV++T PV LG D Y S +
Sbjct: 92 LLTHATASHIAAYVHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTVPPAA 151
Query: 108 ----------------------------------VTRLTYSQNYHLSGKG-----EGIVV 128
+ L YSQ + G+ +
Sbjct: 152 LSASAYAYTQAATTTQNLLLQSPTPDDIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTI 211
Query: 129 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRP 176
+ AGH LGGT+W I E ++YAVD+N+ +E V+E +P
Sbjct: 212 TAYNAGHTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKP 271
Query: 177 AVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
LI + A N R +R E + I + GG VL+PVDS+ RVLEL +LE
Sbjct: 272 TALICSSRGAERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHA 331
Query: 234 WAEHSLNYP-------IYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNAFL 281
W S + +Y +ST+ Y +S LEWM D I + FE R N
Sbjct: 332 WRTDSASAAGVFKAAKLYLAGRNMASTMRYARSMLEWMDDGIVQEFEAFAEGQKRTNGAS 391
Query: 282 LKHV---------TLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWA 324
K V LL K+++ +N +++LAS S++ GFS D+ A
Sbjct: 392 DKKVGGPLDFRFMRLLDRKAQIAKLLSTAVNNGESKGRVILASDTSMDWGFSKDLLRGLA 451
Query: 325 SDVKNLVLFTER 336
SD N+V+ T++
Sbjct: 452 SDPNNVVILTDK 463
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P K++ T+ + + ++D+ G D RS+ ++ + P KL+L+ G+ E T L Q C
Sbjct: 737 PCKLIHTTETIAIHLRIAYVDFAGLHDKRSLNMLIPLIQPRKLILIAGTREETLALAQDC 796
Query: 566 LKHV--------------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ +YTP++ +D + D A+ V+L++ L+ + ++ +
Sbjct: 797 RAMLGADSGGSGAGGEKGGADIYTPEVGVVVDASVDTSAWVVKLADTLVKKLKWQNVRGL 856
Query: 612 EIAWVDAEV 620
I V ++
Sbjct: 857 GIVTVSGQL 865
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 179/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 42 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 101
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+L Y++ +YH +
Sbjct: 102 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQDHLNTFPQIEAIDYHTTH 161
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
GI V P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 162 TISGIRVTPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAQVPRGVKIDVLIT 221
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 222 ESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEY 281
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K +
Sbjct: 282 QKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKFIR 341
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + ++ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 342 SLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 399
Query: 347 QADPPPKAVKVTMSR 361
+ P+ ++ MSR
Sbjct: 400 MQE--PEHIQAVMSR 412
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 187/369 (50%), Gaps = 38/369 (10%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSL--LQPLSKV----ASTIDAVLLSHPDTLHLGALPYAM 75
++ G ++DCG P L + L+ + + ID +L+SH H GALP+ +
Sbjct: 29 ILEFKGRKIMLDCG----IHPGLEGMDALAYIDLIDPAEIDLLLISHFHLDHCGALPWFL 84
Query: 76 KQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHL 119
++ F +T+ +YR LL+ Y + +S S + Y++ N+H
Sbjct: 85 QKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHE 142
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
+ GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +L
Sbjct: 143 VKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDIL 201
Query: 180 ITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
I ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW H
Sbjct: 202 IIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHP 261
Query: 239 --LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296
+ PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+
Sbjct: 262 ELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDD 319
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVK 356
GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 320 I--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEIT 375
Query: 357 VTMSRRVPL 365
+++PL
Sbjct: 376 TMSGQKLPL 384
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHGVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADEMLYAETDLEESMDKIETINFHEVREV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LI ++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILIIES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 59 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 118
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 119 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 176
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 177 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 235
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 236 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 295
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 296 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 351
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 352 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 409
Query: 361 RRVPL 365
+++PL
Sbjct: 410 QKLPL 414
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 153
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +LI ++
Sbjct: 154 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDILIIES 212
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + G L+PV + GR ELLLIL++YW H +
Sbjct: 213 TYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHD 272
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D+ G
Sbjct: 273 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFDDI--G 328
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 329 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 167/343 (48%), Gaps = 23/343 (6%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84
G + DCG + F P S ++D +L++H H A+PY + + +
Sbjct: 33 GKTVMFDCGVHPGFSGEQSLPYFDSIDLDSVDLMLVTHFHLDHCAAVPYVVGKTVFKGRI 92
Query: 85 FSTEPVYRL-GLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKGEGIVVAP 130
F T P + G+L +SR + YS+ ++H + +GI V
Sbjct: 93 FMTHPTKAIFGMLLKDSVKVSRGATDAGLYSEKDVEAALERTELLDFHQTIDVDGIKVTA 152
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
AGH+LG ++ + G +Y DY+R ++H++ L S P ++I +A +
Sbjct: 153 WRAGHVLGAAMFMVEIAGMRALYTGDYSRLADRHMSAADLPS-PPPHIVIVEATYGVSRH 211
Query: 191 PPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
PR+ RE F + I ++ GG LLPV + GR EL+LILEDYW ++ PIY +
Sbjct: 212 LPREGREQRFVNMIRAVVQRGGRCLLPVVALGRAQELMLILEDYWDRNADLRGVPIYQAS 271
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + ++++ M D I +F S N F K++T L + LD+ GP +VLA+
Sbjct: 272 GLARRALGIFQTYIAMMNDDIKAAFGQSA-NPFNFKYITELKTQGGLDDV--GPCVVLAT 328
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ L++G S ++F W D +N V+ + GTLAR + A P
Sbjct: 329 PSMLQSGLSRELFDAWCEDKRNGVIIADFAVQGTLARDILASP 371
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 248 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 307
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 308 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEDSMDKIETINFHEVKEV 365
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 366 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 424
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 425 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 484
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 485 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 540
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 541 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 598
Query: 361 RRVPL 365
+++PL
Sbjct: 599 QKLPL 603
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 186/367 (50%), Gaps = 34/367 (9%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G ++DCG H S L L V A ID +L+SH H GALP+ +++
Sbjct: 85 MLEFKGKRIMLDCGI--HPGMSGLDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQK 142
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSG 121
F +T+ +YR LL Y + +S ++ YS+ N+H
Sbjct: 143 TTFKGRCFMTHATKAIYRW-LLADYIK-VSNIGTEQMLYSEADLESSMEKIETINFHEEK 200
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
GI + AGH+LG ++ I G V+Y D++R++++HL + + + P VLI
Sbjct: 201 DVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN-IHPDVLII 259
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ H R++RE F + + GG L+PV + GR ELLLIL++YW+ H
Sbjct: 260 ESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPEL 319
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ PIY+ + ++ + ++++ M + I + + + +N F+ KH++ L + ++
Sbjct: 320 HDIPIYYASSLAKKCMAVYQTYVNAMNERIRR--QITINNPFVFKHISNLKSIEHFEDI- 376
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVT 358
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 377 -GPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSE--PEEISTM 433
Query: 359 MSRRVPL 365
+ +++PL
Sbjct: 434 VGQKLPL 440
>gi|50308971|ref|XP_454491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643626|emb|CAG99578.1| KLLA0E12013p [Kluyveromyces lactis]
Length = 812
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 182/809 (22%), Positives = 343/809 (42%), Gaps = 142/809 (17%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQL-- 78
+V + L+D GWN + ++ S +D VL+S P LG+ KQ
Sbjct: 19 IVRFNNVIVLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLP 78
Query: 79 --GLSAPVFSTEPVYRLG------LLT--------------MYDQYLSRRSVTRLTYSQN 116
V+ T PV LG LLT + D S + + YSQ
Sbjct: 79 HFRSRIQVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVKYSQT 138
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN--------GT 168
L K +G+ + H +G+ GGT+W I E ++YA +N ++ LN G
Sbjct: 139 VDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRWNHTRDTILNSADLLDNTGN 198
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
S + P +IT+ +P R++ E F D + + ++ ++L+PV+ G++LE+L+
Sbjct: 199 PTSSMMHPTSVITNLSIIGSAEPQRKRVEHFTDTMKRAIQMNNSLLVPVEVGGKLLEVLV 258
Query: 229 ILEDYWAEH---SLNY--PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
++ ++ E+ L Y P++ ++Y ++ Y KS LEW+ + K++E SRDN
Sbjct: 259 LVNNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQVIKTWE-SRDNRSPFD 317
Query: 284 HVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
V+ L I EL G K+ L S ++ S I + D K ++ TER
Sbjct: 318 VVSRLRIITPEEL-GGYTGQKICLVS--EVDDILSQTINKLCSKD-KVTIILTERHPNTP 373
Query: 342 LARMLQA-----------------DPPPKAVKVTMSRRVPLVGEELIAYEEEQTR--LKK 382
L+ D P ++ +MS R+ + L + E+ R +K
Sbjct: 374 AQHPLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRI-MKRTILNKKDAEKVREMIKT 432
Query: 383 EEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRD-------- 434
++ +++E +K ++ ++ D ++ ++ + V+ R ++
Sbjct: 433 RNEVREKIIEEYTAKT----NDKAQTKTILFDVDDESSDEEGVDSMDARGKNGSGNVKVE 488
Query: 435 ILIDGFVPPSTSVAP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA----AMHIG 487
I +D S S MFPF+ + DD+G+V+N ++ ++E DQA +
Sbjct: 489 IPVDITSNDSVSTNEKHLMFPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQSYSN 548
Query: 488 GDDGKLDEGSASLILDAK------------PSKVVSN-------------------ELTV 516
D + D+ +LD++ P K +N E V
Sbjct: 549 NDYDEDDDDDTYEVLDSRINKSKKRKTDHNPRKQENNDDISYLDPLKSDIYKRAIVETKV 608
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTP 576
++C L++ID + RSI I + P K++++ +A + + K + T
Sbjct: 609 NIRCSLVYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVDNQVVVNLTKRNIDILVT- 667
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGK--TENG------- 626
+ ++++ + + A + + L + ++++ + +A V VGK TE
Sbjct: 668 EFNNSVEMDTSVKAIDISIDPSLDQLLNWQRISKSFTVAHV---VGKLLTETDPKAPHRE 724
Query: 627 MLSLLPISTPAPPH--KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
+ L P+S P H S+ +GD+++ +LK L+++ + EF G G L V +RK+
Sbjct: 725 KVILKPLSNPLALHSGSSLRIGDVRLPELKRRLTAENHKAEFQGEGTLVIDGKVLVRKIN 784
Query: 684 PAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
A + +++G + +YK+++
Sbjct: 785 DA----------ETIVDGSPSDVFYKVKS 803
>gi|50286175|ref|XP_445516.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524821|emb|CAG58427.1| unnamed protein product [Candida glabrata]
Length = 843
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 185/831 (22%), Positives = 344/831 (41%), Gaps = 157/831 (18%)
Query: 22 LVSIDGFNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA---- 74
++ D L+D GW+ + ++ S+ S + + +D +L+S P T LGA +
Sbjct: 19 ILRFDNVTILLDPGWSSYKVSYEDSV-AFWSNIIAEVDIILISQPTTECLGAYTFLYYNF 77
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYS 114
+ V++T PV LG ++ + Y+++ + L YS
Sbjct: 78 ISHFISHIQVYATLPVANLGRVSTIEFYVTKGIIGPYQTNQLDIDDVEKAFDFIDVLKYS 137
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-------- 166
Q L K +G+ + + +G+ GG +W IT E +IYA +N ++ LN
Sbjct: 138 QLVDLRSKYDGLSLFAYNSGYAPGGAIWCITTYSEKLIYAPRWNHTRDTILNAANLLDNT 197
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 226
G L S +RP+ ++T+ + +QP R++ + F+D + L GN+L+PVD G+ L+L
Sbjct: 198 GKPLSSLMRPSAIVTNFDHFGSSQPFRKRAKSFKDILKTKLSNNGNILIPVDIGGKFLDL 257
Query: 227 LLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAF 280
+++ D+ E+ N PI L+Y + ++ Y KS EW K++E ++ AF
Sbjct: 258 FVLVHDFLYENGRNNKLANIPIVLLSYTKARSLTYAKSMTEWFSSISAKTWENRNQKTAF 317
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-- 338
L +++ +EL N GPK+ S ++E + + + + + LVL T+ Q
Sbjct: 318 DLDTPFSVVDSNELANLK-GPKICFVS--NVETLVNDALSILGSDNNTLLVLTTDNRQEV 374
Query: 339 ------------FGTLARMLQADPPPKAVKVTMSRRV--PLVGEELIAY-EEEQTRLKKE 383
T + + A+ K+T++ L EEL AY + + R +K+
Sbjct: 375 PALHTIYDYWKENNTESSIESANVLKLNQKITINTTTFKELQNEELDAYLSKLEQRKRKQ 434
Query: 384 EALKASLVKEEESKASLGPDNNLSGDP-------MVIDANNANASA-------------- 422
+ + K + A++ NL+ D +V D N
Sbjct: 435 LITEITTRKGLKKGAAVALPTNLASDEGQKTEVDLVDDITNTEDLEKLLEEEEEDEDEDN 494
Query: 423 -----DVVEPH---GGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFGEVINPDDYI 473
+++E G I +D + P + +FPF + DD+G V+ D ++
Sbjct: 495 EDNLINILEDEDRADGIEESIPVDIIITPGVNNKHKIFPFQPLRQKKDDYGIVVKFDQFV 554
Query: 474 IKD--EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT---------------- 515
+ +D+ + HI GD+ + D +I +A K+ S+ +
Sbjct: 555 PAEDKDDITPSKRHINGDNEE-DMDDDYVIKEASNKKIKSDSVNQPTKETKFSDDINHLR 613
Query: 516 --------------VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 561
V + L FI+ E D RS I KL+L+ S +H+
Sbjct: 614 NSNRPGIREFKATEVNLNMSLTFINMESLVDRRSCGVIWPLFKSRKLILMGPSNVQDKHV 673
Query: 562 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWVDAEV 620
+ V + ++ID + + A + +S +L + + ++++ DY +A V +
Sbjct: 674 -TGIITSKTMEVTSLAYNQSIDFDTTIKALDITISPELDALLKWQRISNDYTLAHVTGRL 732
Query: 621 GKTENGMLSLLPI---STPAPPHKSVL----------------VGDLKMADLKPFLSSKG 661
K S +P+ +T + K VL +GD+++ LK L++
Sbjct: 733 VKESAHQSSAVPVTDNTTSSGREKYVLKPLNGNVGVQTNGSLAIGDVRLIKLKQNLNATN 792
Query: 662 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 711
EF G G L + V IRK+ + + +I+GP +Y ++
Sbjct: 793 HTAEFKGEGILVVDDKVIIRKISDS----------ETIIDGPPSALFYSVK 833
>gi|241953057|ref|XP_002419250.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
gi|223642590|emb|CAX42840.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
Length = 930
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 161/659 (24%), Positives = 268/659 (40%), Gaps = 145/659 (22%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L + P+
Sbjct: 27 FKLIADPFWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLFIKFPNLMSTIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGE 124
+ST PV +LG ++ + Y + V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGILGPVDTAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 175
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISSSTGNPHLSLLR 203
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 236 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 296 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 340
N GPK+V S L +G S + F +D + ++ TE+ ++
Sbjct: 321 NL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDERTTIILTEKTTMSLESSLSSILYTEWD 379
Query: 341 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 391
TLA+ + V + ++ + L G EL ++E+ + +KE+ L + V
Sbjct: 380 TLAKKRGGGESADGIAVPIDKNISLKNWTKEIELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 392 KEEESKASLGPD--------------------------NNLSGDPMVIDANNANASADVV 425
++++++ L D N L I+ N+N SA+ V
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDEGDEEREKQKSDDASNLLIKQYQSINVANSNVSANEV 497
Query: 426 EP---HGGRYRDIL---IDGFVPPSTSVA-------PMFPFY--ENNSEWDDFGEVINPD 470
P H D + ++ +P + FP++ + ++DD+GEVIN +
Sbjct: 498 NPLAIHEAFITDHIKQSLEKNLPIDLRITHKLRPRQATFPYFATSHKQKFDDYGEVINIE 557
Query: 471 DYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------- 517
DY DE + + + + G ++ + + + K +K +N+LT Q
Sbjct: 558 DYQRHDE-VSHSKIIMEGKRKFDEKRTTNNRRNKKQNKQQANKLTPQEQVNRKLLQKYLD 616
Query: 518 -------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
V+C L F+D G D RS+ I+ + P L+L+
Sbjct: 617 TLSNPKKRVGLNYGSKKKSETGKLKVRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 675
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 193/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + KT+ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTILSE--PEEITTLSGQKLPL 390
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 193/385 (50%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + ++P VLIT++ H R+ RE F + KT+ GG L+PV + GR
Sbjct: 194 LMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTILSE--PEEITTLSGQKLPL 390
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 281 QKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 24/365 (6%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S ++ G ++DCG + + P A ID +L++
Sbjct: 18 MRIMPL-GAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLVT 76
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSVTR 110
H H+ ALP+ ++ VF T P R+ +++ DQ + +
Sbjct: 77 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDLNN 136
Query: 111 LTYSQ---NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 167
++H GI P+ AGH+LG ++ I G V+Y DY+ ++HL
Sbjct: 137 CVAKVEIIDFHQEKTHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRHLMA 196
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L + +++ Y +Q ++ F + +R GG L+PV + GR ELL
Sbjct: 197 AELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVESVIRRGGRCLIPVFALGRTQELL 256
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LIL+++W H + PIYF + +++ + ++++ M D I K S N FL H+
Sbjct: 257 LILDEHWQAHPDLHDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAVS--NPFLFDHI 314
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
+ L + + D++ GP +V+AS L++G S +F W SD +N L GTLA+
Sbjct: 315 SNLKSMDDFDDS--GPCVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEGTLAKK 372
Query: 346 LQADP 350
+ ++P
Sbjct: 373 ILSEP 377
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 46 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 105
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 106 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 163
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 164 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 222
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 223 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 282
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 283 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 338
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 339 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 396
Query: 361 RRVPL 365
+++PL
Sbjct: 397 QKLPL 401
>gi|323347464|gb|EGA81734.1| Cft2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 859
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 186/828 (22%), Positives = 323/828 (39%), Gaps = 177/828 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMASL------EAGFSHDIFV-------EW 323
F + +I +EL P ++ + +L + G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 324 ASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 381
AS + ++ E+ + + T ++ + + + PL EE A++ + K
Sbjct: 374 ASSLDKILEIVEQXERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKK 433
Query: 382 KEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEPH 428
+ K LVK E K + +G+ ++ D N N N +
Sbjct: 434 RXRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHIM 486
Query: 429 GG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSEW 460
GG + ++ +D + PS S MFPF +
Sbjct: 487 GGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKK 546
Query: 461 DDFGEVIN-----PDD-----------------------------------YIIKDEDMD 480
DD+G V++ PDD Y + D
Sbjct: 547 DDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPXSX 606
Query: 481 QAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADG 533
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 607 RSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTXSTVNVQLKCSVVILNLQSLVDQ 666
Query: 534 RSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKV 593
RS I + K+VL E + +K V P + + ++ ++ + +
Sbjct: 667 RSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLDI 725
Query: 594 QLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPPH 640
+ L + + ++++ D Y +A V + K L L P+ + H
Sbjct: 726 SIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRSH 785
Query: 641 KS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
K+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 786 KTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 166/342 (48%), Gaps = 35/342 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D + S
Sbjct: 86 STVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVANTASNSA 145
Query: 109 TRLTYSQN------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
T+L Q+ YH + I + P+ AGH+LG ++ I G ++ + D
Sbjct: 146 TQLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGD 205
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
Y+R +++HL + ++ VLIT++ + + PR +RE +I+ L GG LL
Sbjct: 206 YSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRVEREQALMKSITGILNRGGRALL 265
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF- 272
PV + GR ELLLIL++YW +H+ +PIY+ + ++ + ++++ M D+I + F
Sbjct: 266 PVFALGRAQELLLILDEYWGKHTEFQKFPIYYASNLARKCMVIYQTYVGAMNDNIKRLFR 325
Query: 273 ------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
E S D A + K++ L N D+ G ++LAS L+ G S ++F
Sbjct: 326 ERMAEAEASGDGAGKNGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELFE 383
Query: 322 EWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
WA KN V+ T GT+AR + + P ++ MSR +
Sbjct: 384 RWAPSEKNGVIITGYSVEGTMARQIMQE--PDQIQAVMSRSI 423
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 180/388 (46%), Gaps = 50/388 (12%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWN------------DHFDPSLLQPLSKVAST 54
+TPL +++ G + DCG + D FDP L +
Sbjct: 44 LTPLGAGQEVGRSCFVLQFKGKTIMFDCGLHPAYSGQAALPFFDSFDPGL--------DS 95
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VY--------RLGLLTMYDQYL 103
ID +L++H +PY M + VF T P +Y R+ ++ +
Sbjct: 96 IDVLLVTH------AGVPYIMTKTNFKGRVFMTHPTKAIYKWMVADFIRVSNVSADEMLF 149
Query: 104 SRRSVTRLTY---SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ R + + +YH + GI + AGH+LG ++ + G ++Y DY+R
Sbjct: 150 NERDIDNTMARIETIDYHQEKEVNGIKFWCYNAGHVLGACMFMVEIAGVKLLYTGDYSRH 209
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 219
+++HL + + + P VL ++ + PR +RE F + + GG LLPV +
Sbjct: 210 EDRHLMPAEIPT-IAPDVLCVESTYGVRVHEPRVEREGRFTKDVHDIVMRGGKCLLPVFA 268
Query: 220 AGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR ELLLIL+++W N PIY+ + ++ + ++++ M + I + F S
Sbjct: 269 LGRAQELLLILDEFWESKPALHNIPIYYASSLARKCMAIYQTYINQMNERIRRQFAIS-- 326
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F+ KH+ + + SE+D + GP +++AS L+ G S D+F +W D +N V+ T
Sbjct: 327 NPFMFKHIASIKSASEIDQS--GPMVMMASPGMLQNGLSRDLFEQWCPDSRNGVIVTGYS 384
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + + PK V +++PL
Sbjct: 385 VEGTLAKSILS--APKEVPSLTGQKLPL 410
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 281 QKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 174/378 (46%), Gaps = 31/378 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + +VSI N + DCG + + D S + + T+D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTLDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
++++H H GALPY + G P++ T P V R G +
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKISVDRKGETNFFTP 122
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG ++ E V+Y DYN
Sbjct: 123 QMIKDCMKKVIPIALHQTIKVDDELSIKAYYAGHVLGAAMFYAKVGEESVVYTGDYNMTP 182
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ VRP +LIT+ A + ++ RE F + + + GG VL+PV +
Sbjct: 183 DRHLGSAWIDQ-VRPNLLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFAL 241
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRV EL ++++ YW + +LN PIYF ++ Y K F+ W I ++F + N F
Sbjct: 242 GRVQELCILIDSYWEQMNLNVPIYFSEGLAEKANFYYKLFITWTNQKIKQTF--VKRNMF 299
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
KH+ L +AP GP ++ A+ L AG S ++F +WA + N+ + G
Sbjct: 300 DFKHIKPF--DRHLADAP-GPMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVG 356
Query: 341 TLA-RMLQADPPPKAVKV 357
T+ ++L P+ V++
Sbjct: 357 TVGNKLLSNAGGPQMVEI 374
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 167/330 (50%), Gaps = 28/330 (8%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRL 111
ID +L+SH H G LPY + + VF +T+ +Y+ LL+ Y + +S S +
Sbjct: 71 IDLLLISHFHLDHCGGLPYFLTKTSFRGRVFMTHATKAIYKW-LLSDYIK-VSNISSEDM 128
Query: 112 TYSQN-------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
Y++N +H GI + AGH+LG ++ I G ++Y D++
Sbjct: 129 LYTENDLSASMDKIETVNFHQETDVNGIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFS 188
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
R++++HL + + + P VLI +A H R++RE F + + GG L+PV
Sbjct: 189 RQEDRHLMAAEVPA-IHPDVLIIEATYGTHIHEKREEREARFTSTVHDIVNRGGRCLIPV 247
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YW+ H + PIY+ + ++ + ++++ M + I K S
Sbjct: 248 FALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYINAMNEKIRKQISVS 307
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
N F+ KH++ L D+ GP +V+AS +++G S ++F W +D +N +
Sbjct: 308 --NPFVFKHISNLKGMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDRRNGCIIAG 363
Query: 336 RGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 364 YCVEGTLAKHIMSE--PEEITTMSGQKIPL 391
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 167/385 (43%), Gaps = 49/385 (12%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW---------NDHF-DPSLLQPLSKVAST 54
++V PL + +V + G + DCG + HF S QPL +
Sbjct: 3 IKVIPLGAGQDVGRSCVIVELGGRRLMFDCGIHMVNQQQFPDFHFLQGSQQQPLD-FTNH 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV----------YR------------ 92
ID VL++H H GAL Y + +G P+ +T P +R
Sbjct: 62 IDCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLEDFRKVSSMQQGQKGG 121
Query: 93 ----------LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142
+ T + + + + +++ Q + I V + AGH+LG ++
Sbjct: 122 GQGSGGNQNSMNQDTAFTSDMIKACIAKISTIQLHETQVIKGDIKVTAYYAGHVLGACMF 181
Query: 143 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQD 201
+ +GE V+Y DYN ++HL ++ +RP V IT+ A + ++ RE F
Sbjct: 182 YVECNGESVVYTGDYNMTADRHLGAAWIDK-LRPDVCITETTYATTIRDSKRSREREFLK 240
Query: 202 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFL 261
+ +TL GG VL+PV + GR EL ++LE YW +L YPIYF ++ Y K F+
Sbjct: 241 VVHETLDNGGKVLIPVFALGRAQELCVLLETYWNRTNLQYPIYFSGGLTEKANFYYKLFI 300
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
W + I K+F T N F +HV L S D P + AS L G+S IF
Sbjct: 301 NWTNEKIKKTF-TKNQNMFQFQHVKTLDTASI---KSDQPMVCFASPGMLHGGYSLQIFK 356
Query: 322 EWASDVKNLVLFTERGQFGTLARML 346
+WA KN ++ GT+ L
Sbjct: 357 DWAGQEKNTLIIPGYCMPGTVGNKL 381
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGTDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 169/349 (48%), Gaps = 26/349 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G + L+DCG + + P +D +L++H H G LP+ +++
Sbjct: 37 LIQFKGKSILLDCGIHPGLNGVDALPFVDTIDCEKVDLLLVTHFHLDHCGGLPWFLEKTT 96
Query: 80 LSAPVFSTEPVYRLGLLTMYDQY-LSRRSVTRLTYSQN-------------YHLSGKGEG 125
F T + + + D +S + ++ YS++ +H + G
Sbjct: 97 FRGRCFMTHATKAIYPIILSDYVKVSNIGLDQMLYSEDELEKSMDKIELIDFHEQKEVNG 156
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
I +VAGH+LG ++ I G ++Y DY+R +++HL + S +RP VLI ++
Sbjct: 157 IKFWCYVAGHVLGACMFMIEIAGVRILYTGDYSRLEDRHLCAAEVPS-IRPDVLIAESTY 215
Query: 186 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 242
R+ RE F + + GG L+PV + GR ELLLIL+++W +H+ N P
Sbjct: 216 GTQIHENREDREHRFTSMVYTIVSRGGRCLIPVFALGRAQELLLILDEFWTKHAELQNIP 275
Query: 243 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GP 301
I+F + ++ + ++F+ M +I K + + N FL KHV L +D D GP
Sbjct: 276 IFFASSLAKKCMAVYQTFISGMNQNIQK--QIAVQNPFLFKHVRSL---RSIDFFEDIGP 330
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+VLAS L++G S ++F W +D KN + GTLA+ + ++P
Sbjct: 331 CVVLASPGMLQSGLSRELFEMWCTDTKNGCIIAGYCVEGTLAKHILSEP 379
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEP---VYRL------------- 93
ST+DA+L++H H +L Y M++ + V+ T P VY+
Sbjct: 57 STVDALLITHFHLDHAASLTYIMEKTNFRDGNGKVYMTHPTKAVYKFMMQDFVRMSAAST 116
Query: 94 -GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
L T D +S S+ ++ Q + G+ P+ AGH+LG ++ I G V+
Sbjct: 117 DALFTPLDLSMSLASIIPISAHQ---VISPCPGLTFTPYHAGHVLGACMFHIDIAGVKVL 173
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGG 211
Y DY+R +++HL + VRP VLI ++ + + R+++E F I + ++ GG
Sbjct: 174 YTGDYSREEDRHLVKAEIPP-VRPDVLIVESTYGVQSVGNREEKEGRFLSLIHEIIKRGG 232
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
+ LLPV + GR ELLL+L+DYWA+H + PIY+ + ++ + ++++ M +I
Sbjct: 233 HALLPVFALGRAQELLLVLDDYWAKHPELHSVPIYYASNLARKCMAVYQTYIHTMNSNIR 292
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASDV 327
+ F RDN F+ KH++ L L+ DGP +VLAS L++G S ++ WA D
Sbjct: 293 QRF-ARRDNPFIFKHISHLPQTRGLERKIADGPPCVVLASPGMLQSGTSRELLELWAPDP 351
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N ++ T GTLAR + DP
Sbjct: 352 RNALVVTGYSVEGTLARDILNDP 374
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLART 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S ++ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPIYTEQDHLSTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIGGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +HS
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHSDF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 281 QKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 188/385 (48%), Gaps = 36/385 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR L +S S ++ Y++
Sbjct: 76 SHFHIDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDFIK--ISNISTDQMLYTEAD 133
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + +P VLIT++ H R+ RE F + KT+ GG L+PV + GR
Sbjct: 194 LMAAEVPP-TKPDVLITESTYGTHIHEKREDRESRFTSLVQKTVMQGGRCLIPVFALGRA 252
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 253 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 310
Query: 282 LKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+H++ N +D+ D GP +++AS +++G S ++F W +D KN V+ G
Sbjct: 311 FRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIVAGYCVEG 367
Query: 341 TLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + ++ P+ + +++PL
Sbjct: 368 TLAKTILSE--PEEITTLSGQKLPL 390
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 163/316 (51%), Gaps = 23/316 (7%)
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL-------------T 97
T+D +L+SH H +LPY M++ VF T P +YR L
Sbjct: 14 TVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQ 73
Query: 98 MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+Y + S R+ + ++H + + +GI + AGH+LG ++ I G V++ D+
Sbjct: 74 LYSDKDLKDSFDRIE-TIDFHSTIEIDGIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDF 132
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
+R +++HL+ + VRP VLIT++ PR+++E I TL GG VL+P
Sbjct: 133 SREEDRHLSVAEVPP-VRPDVLITESTFGTATHEPREEKEKKLTTMIHSTLANGGRVLMP 191
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW++H N +Y+ + ++ + ++++ M ++I K F
Sbjct: 192 VFALGRAQELLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTYINMMNENIRKKFRD 251
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ N F +++ + N S+ D+ P +V+AS L+ G S + +WA D +N ++ T
Sbjct: 252 TNKNPFQFQYIKNIKNLSKFDDF--QPSVVVASPGMLQNGVSRALLEKWAPDPRNTLIMT 309
Query: 335 ERGQFGTLARMLQADP 350
GT+A+ + +P
Sbjct: 310 GYSVEGTMAKEILLEP 325
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 182/357 (50%), Gaps = 30/357 (8%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF-- 85
F +DCG + + P + + ID +L+SH H GALP+ +++ F
Sbjct: 1 FQLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 60
Query: 86 -STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKGEGIVVAPH 131
+T+ +YR LL+ Y + +S S + Y++ N+H + GI +
Sbjct: 61 HATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 118
Query: 132 VAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQP 191
AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++ H
Sbjct: 119 HAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHE 177
Query: 192 PRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTY 248
R++RE F + + + GG L+PV + GR ELLLIL++YW H + PIY+ +
Sbjct: 178 KREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASS 237
Query: 249 VSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASM 308
++ + ++++ M D I K +N F+ KH++ L + D+ GP +V+AS
Sbjct: 238 LAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASP 293
Query: 309 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
+++G S ++F W +D +N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 294 GMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 348
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 183/369 (49%), Gaps = 32/369 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW-MLSDYIK-ISNISTDQMLYTEAD 135
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + +P VLIT++ H R+ RE F + K ++ GG L+PV + GR
Sbjct: 196 LMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTTLVQKIVQQGGRCLIPVFALGRA 254
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL++YW+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 255 QELLLILDEYWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 312
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+H++ L D+ GP +++AS +++G S ++F W +D KN V+ GT
Sbjct: 313 FRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGT 370
Query: 342 LARMLQADP 350
LA+ + ++P
Sbjct: 371 LAKTILSEP 379
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 179/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+L Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQDHLNTFPMIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YWA+H
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSVLNRGGRVLMPVFALGRAQELLLILDEYWAKHKEY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K +
Sbjct: 281 QKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKFIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + ++ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKHI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P+ ++ M+R
Sbjct: 399 MQE--PEQIQAVMTR 411
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 186/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K + + +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|440632320|gb|ELR02239.1| hypothetical protein GMDG_05312 [Geomyces destructans 20631-21]
Length = 988
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 166/410 (40%), Gaps = 100/410 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K I VLL+H HL A + K L P+
Sbjct: 26 GVKVLIDVGWDETFDVEKLRNLEKHVPAISIVLLTHATVGHLAAYAHCCKHFPLFTRIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRSVTRLT-------YSQNYHLSGKGE------------- 124
++T PV LG + D Y S + + S +Y G GE
Sbjct: 86 YATTPVISLGRTLLQDLYASTPLASTIIPSSLLSETSYSYSKPGSGEDDSHILLQSPTHE 145
Query: 125 ------------------------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
G+ + + AGH LGGT+W I E ++YA
Sbjct: 146 EIANYFSLIHPLKYSQPHQPLPSPFSQPLNGLTITAYNAGHTLGGTIWHIQHGLESIVYA 205
Query: 155 VDYNRRKEK------------HLNGTVLESFVRPAVLITDAYNA--LHNQPPRQQR-EMF 199
VD+N+ +E V+E +P LI + A + R +R E
Sbjct: 206 VDWNQARENILAGAAWLGGAGAGGAEVIEQLRKPTALICSSKGAERIALVGGRTKRDEAL 265
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------LNYPIYFLTYVSSS 252
D I + GG VL+P DS+ RVLEL +LE W + + N +Y + +
Sbjct: 266 LDMIKSAIAKGGTVLIPTDSSARVLELAYLLEHAWRKDASNPESPFQNANLYLCSKNIGA 325
Query: 253 TIDYVKSFLEWMGDSITKSFET-----------------SRDNAFLLKHVTLLINKSEL- 294
T+ Y +S LEWM D I + FE + F KH+ L+ K +
Sbjct: 326 TMRYTRSMLEWMDDGIIREFEAIAGGIDRQPNKPSEPRQAGAGPFDFKHLRLIEKKGGVS 385
Query: 295 -----DNAPDG---PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
D DG K++LAS SL+ GFS DI A+D +NLV+ TE+
Sbjct: 386 AVLNNDATKDGKPMAKVILASDRSLDWGFSKDILRNIAADSRNLVILTEK 435
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 126/350 (36%), Gaps = 117/350 (33%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL---------------- 493
MFP D+FG++I P++Y+ + E+ D+A GK
Sbjct: 600 MFPLVIRRRRADEFGDLIRPEEYL-RAEERDEAEAQDSRQSGKYDTQDTLGKKRRWDDVV 658
Query: 494 -----------------------------DEGSASLILD----------AKPSKVVSNEL 514
D G A+ + D P+K + +
Sbjct: 659 TKADRRPSDSANKRQQTDFNDSGDIPAVNDGGFANGVFDEDAIEDEVDVVGPAKAIFSTE 718
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-- 572
++ V L F+D+EG D RS+ ++ + P KL+LV G E T L C + +
Sbjct: 719 SITVNLRLAFVDFEGLHDKRSLHMLIPLIQPRKLILVSGLKEETLALALDCRRLLGAQIG 778
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW--------- 615
VYTP++ TID + D A+ V+L+ L+ + ++K+ I
Sbjct: 779 GGGDKQVDVYTPEVGATIDASVDTNAWAVKLTHSLVKQLRWQKVKGLGIVTLSGRLAAAL 838
Query: 616 ------VDAEVGKT----------------ENGMLSLLPISTPAPPHKSVL--------- 644
+D G +N +L PI P VL
Sbjct: 839 PSSTESIDGSQGNANKKQKIESDKDSEEVPDNESKALQPIPEPEKASMPVLDTLPTSMAS 898
Query: 645 ----------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
VGDL++ADL+ + S G EF G G L YV IRK+G
Sbjct: 899 ATRSVAQPLHVGDLRLADLRKIMLSAGYTAEFRGEGTLLIDGYVAIRKLG 948
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 171/371 (46%), Gaps = 39/371 (10%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I G N + DCG + + D S + ID V+++H H+GALPY
Sbjct: 14 IVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVTHFHLDHIGALPYF 73
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRS-----------------VTRLTYSQ 115
+ G P++ T P L L + Y + + R VT + Q
Sbjct: 74 TEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERKGEQEQFSVLQIQKCMKKVTAVDLRQ 133
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+ G + + AGH+LG ++ + + V+Y DYN ++HL ++ +
Sbjct: 134 TIKV---GADLEFRAYYAGHVLGAAMFWVKAGDDTVVYTGDYNMTPDRHLGAAQIDR-LE 189
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LIT++ A + ++ RE F A+ K + AGG VL+PV + GR EL ++L++YW
Sbjct: 190 PDLLITESTYATTVRDSKRAREREFLKAVHKCVAAGGKVLIPVFALGRAQELCILLDEYW 249
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+L+ PIY ++ Y K + W + ++ T N F KHV + +S++
Sbjct: 250 ERTNLDMPIYISAGLTMQANVYYKLLISWTNQKVKDTYVTR--NTFDFKHV-IPFERSKI 306
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 354
D AP GP ++ A+ L G S ++F WA N+++ GT+ L P K
Sbjct: 307 D-AP-GPCVLFATPGMLSGGLSLEVFKHWAPSESNMIILPGFCVAGTVGSKLM---PGKP 361
Query: 355 VKVTMSRRVPL 365
K+ + +R L
Sbjct: 362 AKIDLDKRTTL 372
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 498 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
S ++ KP+K+ + T+ V+C + + + D + I ++ HVAP +VLVHG
Sbjct: 353 GSKLMPGKPAKIDLDKRTTLDVRCQIQHLSFSAHTDAKGILDLVRHVAPRNVVLVHGEKP 412
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 613
LK+ +C Y P ET+++T C KV +S++ + + L KK +++
Sbjct: 413 KMAILKKKISSDLCIPCYDPANLETVEITPR-CPIKVGVSKQFLESNLKKKDRQFQL 468
>gi|443898849|dbj|GAC76183.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Pseudozyma antarctica T-34]
Length = 1135
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 191/433 (44%), Gaps = 104/433 (24%)
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS 107
L ++A TID VLLSH HLG YA +LGL V++T PV +G LT+ + + R+
Sbjct: 195 LRELAPTIDLVLLSHSSLDHLGLYAYAYAKLGLRCLVYATMPVQSMGKLTVLEATQTWRN 254
Query: 108 ------------------------------------VTRLTYSQNYHLSGKGEGIVVAPH 131
+ + Y Q HL GK + + +
Sbjct: 255 EVDIDAEEAASNKAGSLASKRRCLATTAEIEDAFEHIKTVRYMQPTHLEGKCASLTLTAY 314
Query: 132 VAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-----------------ESF 173
AGH LGG +WKI + V+ A+D+N +E+HL+GT+L ++
Sbjct: 315 NAGHSLGGAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAAGPGMSSSGSGADAV 374
Query: 174 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
RP +LIT+ L R+ R+ D + KT+++G +VL P+D++ R+LEL+++L+
Sbjct: 375 RRPDLLITEIERGLVVNTRRKDRDAAIIDLVHKTIQSGHSVLFPIDASARLLELMVLLDQ 434
Query: 233 YWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWM----GDSITKSFETSRD-------- 277
+WA H+ +P+ ++ I+ ++++EWM ++ E +D
Sbjct: 435 HWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANETIEADKDRQPDAHRA 493
Query: 278 ----------NAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWAS 325
+ K+V + + ++D A D ++VLA S+ G S + +A
Sbjct: 494 GRGARNAAASSPLDFKYVRVFASLQQMDEAIPQDQARVVLAVPPSMTHGPSRRLLARFAR 553
Query: 326 DVKNLVLFTERGQFGTLARML-----QADPP---------------PKAVKVTMSRRVPL 365
+ + ++ RG+ G+L R L Q P V+ + +VPL
Sbjct: 554 NPNDAIVLISRGEPGSLCRQLWDAWNQRQPKGFSWTKGKLGEVVSGEATVRYELQSKVPL 613
Query: 366 VGEEL-IAYEEEQ 377
GEEL + E EQ
Sbjct: 614 EGEELRLHLESEQ 626
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDM---------------DQAAMHIGGDDGKLD 494
+FP E D FGEV++ ++ + + + AA+ + KL
Sbjct: 754 LFPAIERKRLVDGFGEVVDVARWLSRRRALEAAESAAADPLSASPESAALAAEANRKKLL 813
Query: 495 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
E A A PSK VS + + + C L F++ G DGR++KT++ + P +L++V+G
Sbjct: 814 EEEAK-AQAAVPSKFVSELIEIVLACRLAFVEMSGLNDGRALKTLIPQLHPRRLIMVNGD 872
Query: 555 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
A ++ +K + V+ P + + + AY + L E L++ + + +E
Sbjct: 873 APTRADMRSVLQAIKTLTHDVHAPAWMQHVQIGEVTNAYTLTLGEGLLAQLEMSRFEQFE 932
Query: 613 IAWVDAEV 620
+A V A V
Sbjct: 933 VAHVRALV 940
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 79 STVDALLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 97 ----TMYDQ---YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
+YD+ S +S + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 208
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 174/368 (47%), Gaps = 27/368 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVL 59
G +++TPL + G ++DCG + D P V + +D +L
Sbjct: 24 GDFLEITPLGAGCEVGRSCIYLECKGKKIMLDCGIHPGKDGVQALPYFDVINPKELDLIL 83
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTM---------------YDQYLS 104
++H H LPY +++ V+ T P + M +D+
Sbjct: 84 ITHFHVDHCAGLPYFLEKTDFKGKVYMTHPTKSIYNYVMQDFVKVSNIAIDEKLFDENDL 143
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+ ++ ++ Y +YH + GI + + AGH+LG +++ I DG ++Y DY+R +++H
Sbjct: 144 KNTLDKI-YMLDYHQEVEENGIKFSCYRAGHVLGASMFLIEIDGVKILYTGDYSREEDRH 202
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
L L + +++ Y ++ ++ E F + ++ GG LLPV + GR
Sbjct: 203 LKPAELPNCEVDVLIVESTYGVQIHEQRDKREERFTKLVHDIVKRGGKCLLPVFALGRAQ 262
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
E+LLIL +YW ++ N PIY+ ++ ++ +++ MGD + E S +N F
Sbjct: 263 EILLILNEYWQKNPDIQNVPIYYSGSLAQKSLTVFQTYRNMMGDQLRMELE-SGNNPFHF 321
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
+ +T ++SE P +++AS L+ G S D+FV+WA D KN ++FT GTL
Sbjct: 322 EPITTFNDESEF------PLVIMASPGMLQNGQSRDLFVKWAPDPKNGIVFTGYSVEGTL 375
Query: 343 ARMLQADP 350
A+ + P
Sbjct: 376 AKSVMNRP 383
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+L Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQDHLNTFPMIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++++ DY+R +++HL + VR VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVRVDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITGVLNRGGRVLMPVFALGRAQELLLILDEYWGKHRDY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K +
Sbjct: 281 QRYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKFIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + ++ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P+ ++ M+R
Sbjct: 399 MQE--PEQIQAVMTR 411
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYRTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 150/310 (48%), Gaps = 23/310 (7%)
Query: 41 DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------- 89
D S + ++ +D V++SH H GALPY + +G P++ T P
Sbjct: 26 DFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 85
Query: 90 -----VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI 144
V + G + + + + ++ + + + + + AGH+LG +++I
Sbjct: 86 YRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQI 145
Query: 145 TKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAI 203
E V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F +
Sbjct: 146 KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKV 204
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW 263
+T+ GG VL+PV + GR EL ++LE +W +L PIYF T ++ Y K F+ W
Sbjct: 205 HETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW 264
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
I K+F + N F KH+ +++ DN GP +V A+ L AG S IF +W
Sbjct: 265 TNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKW 319
Query: 324 ASDVKNLVLF 333
A + KN+V+
Sbjct: 320 AGNEKNMVIM 329
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 173/332 (52%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 59 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 116
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 117 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 176
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 177 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 235
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 236 PVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 295
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 296 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 351
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 352 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 381
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 183/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 172/373 (46%), Gaps = 36/373 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV----------YR---------LGLLTM 98
V++SH H G+LP+ + +G P++ T P YR T
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTS 127
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
D + V + H+ + + + AGH+LG +++I V+Y DYN
Sbjct: 128 DDIKNCMKKVVGCALHEIIHVDNE---LSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYN 184
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL + VRP VLI+++ A + ++ RE F + + + GG V++PV
Sbjct: 185 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECVMKGGKVIIPV 244
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +LN PIYF ++ Y + F+ W ++I K+F
Sbjct: 245 FALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 302
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 303 NMFEFKHIKPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYC 359
Query: 338 QFGTL-ARMLQAD 349
GT+ AR++ +
Sbjct: 360 VAGTVGARVINGE 372
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 97 ----TMYDQ---YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
+YD+ S +S + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 208
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 173/332 (52%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 82
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 83 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 142
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 143 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 201
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 202 PVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 261
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 262 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 317
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 318 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 151/311 (48%), Gaps = 29/311 (9%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP------------- 89
S + P + + ID V++SH H GALPY + +G + P++ T P
Sbjct: 26 SFISPEGPITNFIDCVIISHFHLDHCGALPYLTEMVGYNGPIYMTHPTKAISPILLEDMR 85
Query: 90 ---VYRLGLLTMYDQYLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 143
V + G + + + + + V +T Q+ + + E + + AGH+LG ++
Sbjct: 86 KISVEKKGEVNFFTSQMIKDCMKKVITVTLHQSIMVDSQLE---IKAYYAGHVLGAAMFW 142
Query: 144 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 202
I V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F
Sbjct: 143 IRVGNLSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 201
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 262
+ + + GG VL+PV + GR EL ++LE YW +L PIYF ++ +Y K F+
Sbjct: 202 VHECIEKGGKVLIPVFALGRAQELCILLETYWERMNLKVPIYFAVGLTEKANNYYKMFIT 261
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
W I K+F + N F KH+ ++S +D A P +V A+ L AG S IF +
Sbjct: 262 WTNQKIRKTF--VQRNMFDFKHIKPF-DRSYIDQA--WPMVVFATPGMLHAGLSLQIFKK 316
Query: 323 WASDVKNLVLF 333
WA + N+V+
Sbjct: 317 WAPNENNMVIM 327
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 24/365 (6%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P A ID +L++
Sbjct: 17 MRIMPL-GAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLIT 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSVTR 110
H H+ ALP+ ++ VF T P R+ +++ DQ + +
Sbjct: 76 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDLNN 135
Query: 111 LTYSQ---NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 167
++H GI P+ AGH+LG ++ I G V+Y DY+ ++HL
Sbjct: 136 CVSKVEIIDFHQEMMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRHLMA 195
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L + +++ Y +Q ++ F + +R GG L+PV + GR ELL
Sbjct: 196 AELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCLIPVFALGRTQELL 255
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LIL+++W H + PIYF + +++ + ++++ M D I K S N F +H+
Sbjct: 256 LILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAIS--NPFQFEHI 313
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
+ L + + D++ GP +V+AS L++G S +F W SD +N L GTLA+
Sbjct: 314 SNLKSMDDFDDS--GPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEGTLAKK 371
Query: 346 LQADP 350
+ ++P
Sbjct: 372 ILSEP 376
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 156/337 (46%), Gaps = 30/337 (8%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + + +D V++SH H GALPY + +G S P
Sbjct: 1 MLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDCVIISHFHLDHCGALPYMTEMVGYSGP 60
Query: 84 VFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIV 127
++ T P V R G + + R + ++ + + +
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVDRKGETNFFTSAMIRDCMRKVVAVNLHQAVQVDDELE 120
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG ++ I + V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 121 IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLGAAWVDK-CRPDLLITESTYAT 179
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + + GG VL+PV + GR EL ++LE YW +L PIYF
Sbjct: 180 TIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPIYFA 239
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
++ +Y K F+ W I K+F + N F KH+ +++ +DN GP +V A
Sbjct: 240 VGLTEKATNYYKMFITWTNQKIRKTF--VQRNMFDFKHIKPF-DRAFIDNP--GPMVVFA 294
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
+ L AG S IF +WA N+V+ GT+
Sbjct: 295 TPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAGTVG 331
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ N V+VK + ++ + AD + I ++ P ++LVHG A + L++ L+
Sbjct: 343 LENRQVVEVKMSVQYMSFSAHADAKGIMQLIQQCEPANVLLVHGEAGKMDFLRKKILQEF 402
Query: 570 CPHVYTPQIEETIDVTS 586
Y P ET+ + +
Sbjct: 403 SVDCYMPANGETVVIET 419
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 173/332 (52%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 82
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 83 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 142
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 143 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 201
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 202 PVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 261
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 262 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 317
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 318 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|350587135|ref|XP_003482353.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Sus scrofa]
Length = 272
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 72/276 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 9 PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 68
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 69 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 126
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 127 MRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI 186
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 187 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR---- 242
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 243 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 272
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 176/346 (50%), Gaps = 28/346 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P +V+AS +++G S ++F W +D +N V+ GTLA++L
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKIL 367
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 174/365 (47%), Gaps = 31/365 (8%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPD 64
+TPL + ++ G L+DCG + P +D +L++H
Sbjct: 15 ITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVTHFH 74
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS-----RRSVTRLTYSQ- 115
H GALP+ +++ F +T+ +YR+ + YL S R+ Y++
Sbjct: 75 LDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSI----GDYLKVSKYGGSSDNRMLYNEE 130
Query: 116 ------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169
++H + GI HVAGH+LG ++ I G ++Y D++R +++HL
Sbjct: 131 DLEKVIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDRHLCAAE 190
Query: 170 LESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
L + V P VLI ++ R +RE F + + + GG L+P + GR ELLL
Sbjct: 191 LPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLIPAFALGRAQELLL 249
Query: 229 ILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
IL++YW H + P+Y+ + ++ + ++F+ M I K + + +N F+ KHV+
Sbjct: 250 ILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK--QIALNNPFVFKHVS 307
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
N +D+ D GP +VLAS L+ G S ++F W +D KN + GTLA+
Sbjct: 308 ---NLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKH 364
Query: 346 LQADP 350
+ ++P
Sbjct: 365 ILSEP 369
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 24/365 (6%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P A ID +L++
Sbjct: 17 MRIMPL-GAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLIT 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSVTR 110
H H+ ALP+ ++ VF T P R+ +++ DQ + +
Sbjct: 76 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDLNN 135
Query: 111 LTYSQ---NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 167
++H GI P+ AGH+LG ++ I G V+Y DY+ ++HL
Sbjct: 136 CVSKVEIIDFHQEIMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRHLMA 195
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L + +++ Y +Q ++ F + +R GG L+PV + GR ELL
Sbjct: 196 AELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCLIPVFALGRTQELL 255
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LIL+++W H + PIYF + +++ + ++++ M D I K S N F +H+
Sbjct: 256 LILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAIS--NPFQFEHI 313
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
+ L + + D++ GP +V+AS L++G S +F W SD +N L GTLA+
Sbjct: 314 SNLKSMDDFDDS--GPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEGTLAKK 371
Query: 346 LQADP 350
+ ++P
Sbjct: 372 ILSEP 376
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 173/332 (52%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 11 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 68
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 69 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 128
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 129 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 187
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 188 PVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 247
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 248 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 303
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 304 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 333
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 172/332 (51%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 28 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 85
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 86 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 145
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 146 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 204
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H PIY+ + ++ + ++++ M D I K
Sbjct: 205 PVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 264
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 265 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 320
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 321 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 350
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 178/382 (46%), Gaps = 40/382 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+L Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQDHLNTFPMIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 221 ESTYGVASHIPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHKEY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K +
Sbjct: 281 QKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDAAGKGGPWDFKFIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + D+ G ++LAS L+ G S ++ WA KN V+ T GT+A+ L
Sbjct: 341 SLKSIDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQL 398
Query: 347 QADPPPKAVKVTMS----RRVP 364
+P +T S RR P
Sbjct: 399 MQEPDQIQAVMTRSSAGGRRAP 420
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 168/337 (49%), Gaps = 25/337 (7%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQ 77
S+++ G ++D G + F P T+D +L+SH H +LPY M++
Sbjct: 31 SHIIQFKGKTVMLDAGVHPAFQGMASLPFYDEFDLGTVDVLLISHFHLDHAASLPYVMQK 90
Query: 78 LGLSAPVFSTEP---VYRLGLL-------------TMYDQYLSRRSVTRLTYSQNYHLSG 121
VF T P +YR L +Y + S R+ + ++H +
Sbjct: 91 TNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQLYSDKDLKDSFDRIE-TIDFHSTI 149
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
+ +GI + AGH+LG ++ I G V++ D++R +++HL+ + VRP VLIT
Sbjct: 150 EIDGIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDFSREEDRHLSVAEVPP-VRPDVLIT 208
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ PR+++E I TL GG VL+PV + GR ELLLIL++YW++H
Sbjct: 209 ESTFGTATHEPREEKEKKLTTMIHSTLANGGRVLMPVFALGRAQELLLILDEYWSQHQDL 268
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
N +Y+ + ++ + ++++ M ++I K F + N F +++ + N S+ D+
Sbjct: 269 ENIKVYYASDLARKCLAVYQTYINMMNENIRKKFRDTNKNPFQFQYIKNIKNLSKFDDF- 327
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
P +V+AS L+ G S + +WA D +N ++ TE
Sbjct: 328 -QPSVVVASPGMLQNGVSRALLEKWAPDPRNTLIMTE 363
>gi|171679503|ref|XP_001904698.1| hypothetical protein [Podospora anserina S mat+]
gi|170939377|emb|CAP64605.1| unnamed protein product [Podospora anserina S mat+]
Length = 967
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 175/431 (40%), Gaps = 104/431 (24%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKILVDVGWDETFAVEKLRELEKQVPTLSFILLTHATVA 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------- 105
H+GA + K + L + P ++T PV LG D Y S
Sbjct: 66 HIGAYAHCCKHIPLFSTIPAYATRPVIDLGRTLTQDLYASTPLAATTIPTSSLAEVAYAS 125
Query: 106 -----------------RSVTR-------LTYSQNYH-----LSGKGEGIVVAPHVAGHL 136
+TR + YSQ S + V + +G
Sbjct: 126 SQAPSLNPNLLLQPPSPEEITRYFANIQAVQYSQPQQPRSSPFSPDITNLTVTAYNSGRT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLITD 182
LGG +W I E ++YAVD+N+ KE +G V+E +P L+
Sbjct: 186 LGGAIWHIQHGLESIVYAVDWNQGKENVFSGAAWLSGGHGGGGSTEVIEQLRKPTALVCS 245
Query: 183 AYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------- 235
+ ++ E ++I + GG VL+PVDS+ RVLEL +LE W
Sbjct: 246 SRTPDATLSRAKRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRNEVDNNN 305
Query: 236 -EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 279
E N +Y + ST+ + +S EWM D I + FE +
Sbjct: 306 NETFRNAQLYLAGHSIGSTLKHARSLFEWMDDKIVREFEAAAGGKESHSRGQRGGHHHDH 365
Query: 280 -----FLLKHVTLLINKSEL---------DNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
F KH+ LL K ++ D P G +++LA+ +SLE GFS ++ A
Sbjct: 366 KVAGPFDFKHLRLLERKGQVSWVLKQALEDLEPKG-RVILATDSSLEWGFSKEVLKSIAG 424
Query: 326 DVKNLVLFTER 336
D +NLVL TE+
Sbjct: 425 DARNLVLLTEK 435
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 60/236 (25%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+V + V + F+D+ G D RS+ ++ + P +LVLV G+ + ++ L C
Sbjct: 708 PAKLVMTTHKISVNLRIAFVDFSGLHDKRSLHMLIPLIQPRRLVLVAGTEQESQALAADC 767
Query: 566 LKHVCPH-------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
K + V+TP + ++ + D A+ V+LS+ L + ++ +
Sbjct: 768 KKLLSAQLAANSSNESATVDVFTPPVGTFVNASVDTNAWVVKLSDYLAKKLKWQDVNGLG 827
Query: 613 IAWV------------------------DAEVGKTENGMLSLLPISTPAPPH-------- 640
IA + E G + + ++L ++ A P
Sbjct: 828 IATITGVLLPGGGFIPSDDPNDEGNKRQKTEEGGSPSSSMALTTVNNDANPRTLPTVDVL 887
Query: 641 --------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + GDL++ADL+ + G + EF G G L E V +RK
Sbjct: 888 PVNLAATATVKAASQPLHAGDLRLADLRRAMLHAGHKAEFRGEGTLLIDETVAVRK 943
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 177/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID + +SH H GALP+ +++
Sbjct: 37 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQIDLLFISHFHLDHCGALPWFLQKTS 96
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR +L+ Y + +S S ++ Y++ N+H
Sbjct: 97 FKGRCFMTHATKAIYRW-MLSDYIK-VSNISTDQMLYTEADLEASMEKIETINFHEERDI 154
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G V+Y D++R++++HL + + +RP VLIT++
Sbjct: 155 LGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPDVLITES 213
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW+++
Sbjct: 214 TYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPDLQE 273
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I + + + +N F+ + ++ L D+ G
Sbjct: 274 IPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAINNPFVFRFISNLKGIDHFDDV--G 329
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D KN V+ GTLA+ + +P
Sbjct: 330 PCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILFEP 379
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 169/353 (47%), Gaps = 31/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ V PL + +V ++G + DCG +ND D S+L + S ID
Sbjct: 38 IVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLAD-GDLTSRIDV 96
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALP+ + G P++ T P + L + D + R+ S
Sbjct: 97 VIISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLEDYRKISVERKGERNFFTS 156
Query: 115 Q------------NYHLSGKGEG-IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q + H S G I + + AGH+LG ++ + + V+Y DYN
Sbjct: 157 QMIKDCMSKVQPVDLHQSVTLPGDIEIKAYYAGHVLGAAMFHVRVGDKSVVYTGDYNMTP 216
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL GT F +P +IT++ A + ++ RE F + + ++ GG VL+PV +
Sbjct: 217 DRHL-GTAWIDFCQPDAIITESTYATTIRDSKRCRERDFLTKVHRCVKNGGKVLIPVFAL 275
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE YW + L+ PIYF T ++ +Y + F+ + I +F N F
Sbjct: 276 GRAQELCILLETYWERYKLDTPIYFSTGLTEKANEYYRLFVMYTNQKIKDTFVDR--NLF 333
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++S D GP+++ A+ L AG + ++F +WA D +N+V+
Sbjct: 334 DFKHIRAF-DRSYADQP--GPQVLFATPGMLHAGVALEVFAKWAGDPRNMVIL 383
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 161/322 (50%), Gaps = 31/322 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L + + S R + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMFASWRQIEAVDFHQDVSIAG---GLRFTAYHAGHVLGACMFLIEIAGLRI 190
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 210
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 181/399 (45%), Gaps = 40/399 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAV 58
M ++Q+TPL +L++ G L+DCG + +D P ++D +
Sbjct: 1 MEDTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDPESVDVL 60
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTR-------- 110
L++H H +LPY ++ G VF T P + L + D YL +V
Sbjct: 61 LVTHFHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRLLLGD-YLRLMAVKHGSSGGELN 119
Query: 111 ---LTYSQ-------------NYHLS---GKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
+ Y++ +YH + G+ AGH+LG ++ I G V
Sbjct: 120 PEDVLYTEAELQSCVDKIELIDYHQTIDLNLPSGLKFHALNAGHVLGAAMFYIEIGGRSV 179
Query: 152 IYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 209
+Y DY+ +++HL L + P VLI ++ + P R +RE F I + +
Sbjct: 180 LYTGDYSMEEDRHLMAAELPRYHASPDVLIVESTYGVQVHPTRAEREARFTGTIERIVTG 239
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG L+PV + GR ELLLIL++YW EH + P+Y+ + ++S + +++ M
Sbjct: 240 GGRCLIPVFALGRAQELLLILDEYWQEHPHLQSVPVYYASKMASRALRVYQTYANMMNAR 299
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASD 326
I + N F +H+ L +++N D GP +V AS L++G S +F WA+D
Sbjct: 300 IRTQMDLG--NPFSFRHIRNL-KSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWATD 356
Query: 327 VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
KN VL TLA+ + + PK V RR PL
Sbjct: 357 PKNGVLIAGYAVEHTLAKEIMSQ--PKEVVTMEGRRQPL 393
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 160/322 (49%), Gaps = 31/322 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L + S R + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTSYHAGHVLGACMFLIEIAGLRI 190
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 210
+Y D++R +++HL + VRP VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VRPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 97 ----TMYDQ---YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
+YD+ S +S + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 208
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 MILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|320590943|gb|EFX03384.1| polyadenylation specificity factor [Grosmannia clavigera kw1407]
Length = 1036
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 181/450 (40%), Gaps = 124/450 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG LID GW++ FD L+ L K TI VLL+H
Sbjct: 6 PLLGAKSESTASQSLLELDGGVKVLIDVGWDESFDAEKLRELEKQVPTISLVLLTHATVS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYSQ 115
H+ A + K + P+F+T+PV LG + D Y S R S+ +YS
Sbjct: 66 HIAAFAHCCKNFPQFVRIPIFATKPVIDLGRTLLQDLYASTPLAASTIPRGSLAEASYSY 125
Query: 116 NYHLSGKG----------------------------------------EGIVVAPHVAGH 135
+ LS + G+ + + +G
Sbjct: 126 SQSLSAEHSQFLLQAPTADEITRYFSLIRELKYSQPHQPQAPPSLPPLNGLTITAYNSGR 185
Query: 136 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDA 183
LGGT+W I E ++Y VD+ + KE +G V E +P L++ +
Sbjct: 186 TLGGTIWHIQLGLESIVYGVDWGQYKENVFSGAAWIGGGGSGGSEVNEQLRKPTALVSSS 245
Query: 184 YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---- 239
+P + ++ Q AI + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 RAPAVLRPGLRDEQLLQ-AIRVCVARGGTVLIPVDSSARVLELAYLLEHAWRKDAAAAAA 304
Query: 240 ------------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------- 279
++ S S + + ++ LEWM D I + FE D +
Sbjct: 305 GSNGKEDIGLLARSKLFLAGRTSGSLMRHARTLLEWMNDGIVQEFEAVADGSKQQTNNGG 364
Query: 280 ----------------------------FLLKHVTLLINKSELDNA------PDGPKLVL 305
F +KH+ LL +++++ P G K++L
Sbjct: 365 NRGRGGGGGGGGGGGNGADDNKNRESGPFDMKHLRLLERRAQVERVLNSQSPPGGGKVIL 424
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
AS AS+E GFS ++ A +NLVL TE
Sbjct: 425 ASDASMEWGFSKEVLRRIADKPRNLVLLTE 454
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL---- 561
P+K+V TV + + ++D+ G R+++ +L V P KL+LV GSA TE
Sbjct: 753 PAKMVFTTETVVAQMAIGYVDFSGLHTDRNLEMLLPLVEPRKLILVGGSAVETEAAATRY 812
Query: 562 -----KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 613
KQ + V++P + +D + D A+ V+L++ L+ + ++ LG I
Sbjct: 813 RNVVSKQRGVAAEDVDVFSPAVGAAVDASVDTHAWVVRLADALVKKLRWQNLGGLGI 869
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 189/384 (49%), Gaps = 34/384 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 135
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + +P VLIT++ H R+ RE F + K + GG L+PV + GR
Sbjct: 196 LMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPVFALGRA 254
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 255 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 312
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+H++ L D+ GP +++AS +++G S ++F W +D KN V+ GT
Sbjct: 313 FRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGT 370
Query: 342 LARMLQADPPPKAVKVTMSRRVPL 365
LA+ + ++ P+ + +++PL
Sbjct: 371 LAKTILSE--PEEITTLSGQKLPL 392
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 155/320 (48%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+DA+L++H H AL Y M++ V+ T P L M D S T
Sbjct: 57 STVDAILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSNSST 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
S + L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALISPLDLSMSISSIIPVSAHQLITPCPGVTFTPYHAGHVLGACMYLIDMAGIKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + VRP VLI ++ + + R ++E+ F + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLEARDEKELRFTSLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M +I F
Sbjct: 236 LPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSNIRTRF 295
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ + S E A P +VLAS +++G S + WA D +N
Sbjct: 296 -AKRDNPFVFKHISNMPQSSGWERKIAEGPPCVVLASPGFMQSGPSRQLLELWAPDSRNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GTLAR + +P
Sbjct: 355 LIVTGYSVEGTLAREIMTEP 374
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 189/384 (49%), Gaps = 34/384 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-- 115
SH H GALP+ + + F +T+ +YR +L+ Y + +S S ++ Y++
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW-MLSDYIK-ISNISTEQMLYTEAD 135
Query: 116 -----------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
N+H G+ + AGH+LG ++ I G ++Y D++R++++H
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + +P VLIT++ H R+ RE F + K + GG L+PV + GR
Sbjct: 196 LMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPVFALGRA 254
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + + +N F+
Sbjct: 255 QELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIAVNNPFV 312
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+H++ L D+ GP +++AS +++G S ++F W +D KN V+ GT
Sbjct: 313 FRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGT 370
Query: 342 LARMLQADPPPKAVKVTMSRRVPL 365
LA+ + ++ P+ + +++PL
Sbjct: 371 LAKTILSE--PEEITTLSGQKLPL 392
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 172/332 (51%), Gaps = 28/332 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
+ ID +L+SH H GALP+ +++ F +T+ +YR LL+ Y + +S S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW-LLSDYVK-VSNISAD 82
Query: 110 RLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
+ Y++ N+H + GI + AGH+LG ++ I G ++Y D
Sbjct: 83 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 142
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 215
++R++++HL + + ++P +LI ++ H R++RE F + + + GG L+
Sbjct: 143 FSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLI 201
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 202 PVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN 261
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F+ KH++ L + D+ GP +V+AS ++ G S ++F W +D +N V+
Sbjct: 262 I--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVII 317
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + +++PL
Sbjct: 318 AGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|302415331|ref|XP_003005497.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
gi|261354913|gb|EEY17341.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
Length = 739
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 133/463 (28%), Positives = 203/463 (43%), Gaps = 99/463 (21%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSK--VASTIDAVLLSHPD 64
PL G +E+ S ++ +DG LID GW++ FD L+ L K V +T + L
Sbjct: 6 PLQGACSESAASQSILELDGGVKVLIDLGWDESFDVEKLKALEKIPVYATRPVIDLGRTL 65
Query: 65 TLHL-GALPYAMK-----QLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTR-------L 111
T L + P A L A +S +P L Q + +TR L
Sbjct: 66 TQDLYSSTPRAATTIPHDSLSEVAYSYSQQPTTGSNFLL---QAPTPEEITRYFSLIQPL 122
Query: 112 TYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
YSQ + G+ + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 123 KYSQPHEPLPSPFSPPLNGLTITAFNAGHTLGGTIWHIQHGLESIVYAVDWNQARENVFA 182
Query: 167 GT------------VLESFVRPAVLITDAYNALHNQPP---RQQREMFQDAISKTLRAGG 211
G V+E +P LI + A N P R++ E D I + GG
Sbjct: 183 GAAWLGGAGAGGAEVIEQLRKPTALICSSRGADRNAPSGGRRKRDEQLIDMIKLCVSRGG 242
Query: 212 NVLLPVDSAGRVLELLLILEDYW------AEHSLNYP-IYFLTYVSSSTIDYVKSFLEWM 264
VL+P DS+GRVLEL +LE W + +L +Y SST+ Y +S LEWM
Sbjct: 243 TVLIPADSSGRVLELAYLLEHAWRLEAGKTDSALRAAKLYLAGRNVSSTLRYARSMLEWM 302
Query: 265 GDSITKSFETSRDNA----------------FLLKHVTLLINKSEL--------DNAPDG 300
D+I + FE + D F + + L+ ++++ +N
Sbjct: 303 DDNIVREFEATADGQRKANGNDGKHAKDAAPFDFRFMRLVEREAQIRKLLSQTSENVRSD 362
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER---GQFG--TLARML--------- 346
++++AS SLE GFSH++ E A D +NL++ T++ Q G ++AR+L
Sbjct: 363 GRVIVASDNSLEWGFSHELLRELAKDSRNLLILTDKPSLAQSGQPSIARILWDWWQERRD 422
Query: 347 -----QADPPP---------KAVKVTMSRRVPLVGEELIAYEE 375
Q+D +A+ VT +RR L G+EL Y++
Sbjct: 423 GVSIDQSDSNDSIELVYGGGRALTVTDARRQGLEGDELSTYQQ 465
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 174/350 (49%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 12 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 71
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +Y+ L +S S + Y++ N+H +
Sbjct: 72 FKGRTFMTHATKAIYKWLLSDCVK--VSNISADDMLYTETDLEESMDKIETINFHEVKEV 129
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 130 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 188
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 189 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 248
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 249 IPIYYASSLAKKCMSVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 304
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 305 PSIVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHVMSEP 354
>gi|449512224|ref|XP_002198279.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Taeniopygia guttata]
Length = 272
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 72/276 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 9 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 68
Query: 566 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 69 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 126
Query: 619 -EVGKTENGML-----------------------------------------------SL 630
V K + G++ +
Sbjct: 127 MRVSKVDTGVILEEGELREDEDLEMQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 186
Query: 631 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 685
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 187 IPTLEPMPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 242
Query: 686 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 243 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 272
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 28/352 (7%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQ 77
+L+ G ++DCG + + P + +D +L+SH H GALPY +++
Sbjct: 32 CHLLEFKGKKIMLDCGIHPGLNGFASLPFLDLVEVEEVDLLLISHFHLDHCGALPYFLEK 91
Query: 78 LGLSAPVFST---EPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSG 121
F T + +YR LL+ Y + +S + + Y++ N+H
Sbjct: 92 TQFKGRCFMTHASKAIYRW-LLSDYVK-VSNIATEDMLYTESDIENSMDKIETINFHQEV 149
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
+ GI + AGH+LG ++ I G V+Y D++R++++HL + + P V+I
Sbjct: 150 EVNGIKFWCYTAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPR-IHPDVVII 208
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ H R+ RE F + + GG L+PV + GR ELLLIL++YW+ H
Sbjct: 209 ESTYGTHIHEKREDREARFTGLVHDIVSRGGRCLIPVFALGRAQELLLILDEYWSNHPEL 268
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 298
+ PIY+ + ++ + ++++ M + I + S N F+ KH++ L + ++
Sbjct: 269 HDIPIYYASSLAKKCMSVYQTYINAMNEKIRRQINIS--NPFVFKHISNLKSMEHFEDI- 325
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +VLAS +++G S ++F W +D +N + GTLA+ + ++P
Sbjct: 326 -GPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYCVEGTLAKHILSEP 376
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 181/382 (47%), Gaps = 39/382 (10%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQ 77
S+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 39 SHIIQYKGKTVMLDAGMHPAYDGLAALPFYDEFDLSTVDVLLISHFHIDHAASLPYVLSK 98
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRL----------TYSQ----NYHL 119
VF T P + + D +S S +R+ T+ Q +Y+
Sbjct: 99 TNFKGRVFMTHPTKAIYKWLIQDSVRVGNISSSSESRIQLYTEADHLSTFPQIEAIDYYT 158
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
+ I + P+ AGH+LG ++ I G +++ DY+R +++HL + V+ VL
Sbjct: 159 THTISSIRITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREEDRHLISAEVPKNVKVDVL 218
Query: 180 ITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
IT++ + + PR +RE +I+ + GG LLPV + GR ELLLIL++YWA+H
Sbjct: 219 ITESTFGIASHVPRLEREAALMKSITGIINRGGRALLPVFALGRAQELLLILDEYWAKHP 278
Query: 239 --LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-----------ETSRDNAFLLKHV 285
PIY+ + ++ + ++++ M D+I + F + S+ + K+V
Sbjct: 279 EFQKIPIYYASNIARKCMVVYQTYVYAMNDNIKRLFRERMEEAERNGDASKAGPWDFKYV 338
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L + D+ G ++LAS ++ G S ++ WA D +N V+ T GT+ +M
Sbjct: 339 RSLKSLERFDDV--GSCVMLASPGMMQNGVSRELLERWAPDQRNGVIMTGYSVEGTMGKM 396
Query: 346 LQADP---PPKAVKVTMSRRVP 364
+ +P P + ++RR P
Sbjct: 397 ILHEPEQIPAVMTRANVARRGP 418
>gi|322708414|gb|EFY99991.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium anisopliae ARSEF 23]
Length = 960
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 177/426 (41%), Gaps = 98/426 (23%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+ GW++ FD L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKVLVGLGWDETFDLGKLEELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS---------RRSVTRLTYS- 114
HL A + K L P ++T PV LG + D Y S + S++ + Y+
Sbjct: 66 HLAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLYSSTPAASTTIRQTSLSEIAYAY 125
Query: 115 -------QNYHLSG-------------------------------KGEGIVVAPHVAGHL 136
QN L G+ + + +GH
Sbjct: 126 TQTAATAQNLLLQSPTPDQIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 184
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 185 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 238
A + R +R E + I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GAQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWRADAASD 305
Query: 239 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 280
+ +Y SST+ Y +S LEWM D+I + FE F
Sbjct: 306 NGVLTSAKLYLAGRNMSSTMRYARSMLEWMDDNIVQEFEAFAEGQRKANGAVEKKEGGPF 365
Query: 281 LLKHVTLLINKSELDNAPD----------GPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
K++ LL K+++ D +++LAS S+E GFS D+ A D NL
Sbjct: 366 DFKYLRLLERKAQVSKLLDQVASAQGEVAKGRVILASDTSMEWGFSKDVLKGLAKDPNNL 425
Query: 331 VLFTER 336
V+ T+R
Sbjct: 426 VILTDR 431
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 127/328 (38%), Gaps = 96/328 (29%)
Query: 451 FPFYENNSEWDDFGEVINPDDYIIKDE-DMDQA-AMHIG--------------------- 487
FP DDFGE+I P+DY+ +E D D A H+
Sbjct: 595 FPVAIRRKRNDDFGELIRPEDYLRAEEKDEDNADGSHLALDDDKLGKKRKWDDVIKGANG 654
Query: 488 --------------GDDGKLDEGSASLILD----------AKPSKVVSNELTVQVKCLLI 523
GDDG +G A+ LD P K+V T+Q K +
Sbjct: 655 PNKRPQPGKGVAEDGDDGISADGHAADDLDDVEDTEPEEPTGPCKLVYTTETIQAKLRIG 714
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQ 577
F+D+ G D RS+ ++ + P KL+LV G+ E T L + C + V+TP
Sbjct: 715 FVDFSGLHDRRSLDMLIPLIQPRKLILVGGNHEETMSLAEDCRAALGMDGDKAVDVFTPS 774
Query: 578 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------- 620
+ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 775 VGVWVDASVDTNAWVVKLADPLVKKLKWQNVRGLSIVTISGQLLATNTTAEATDPSDEDS 834
Query: 621 ----GKTE---------------NGMLSLLP------ISTPAPPHKSVLVGDLKMADLKP 655
KTE +G+L +L +S + + VGDL++ADL+
Sbjct: 835 SNKRQKTEPSTAVALTSTALTNSSGVLPVLDVIPSNLVSAARTAAQPLHVGDLRLADLRR 894
Query: 656 FLSSKGIQVEFAG-GALRCGEYVTIRKV 682
+ G EF G G L V++RK
Sbjct: 895 AMQGSGHGAEFRGEGILVIDGSVSVRKT 922
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 176/350 (50%), Gaps = 28/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID + +SH H GALP+ +++
Sbjct: 39 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQIDLLFISHFHLDHCGALPWFLQKTS 98
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR +L+ Y + +S S ++ Y++ N+H
Sbjct: 99 FKGRCFMTHATKAIYRW-MLSDYIK-VSNISTDQMLYTEADLEASMEKIETINFHEERDI 156
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G V+Y D++R++++HL + + +RP VLIT++
Sbjct: 157 LGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPDVLITES 215
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R+ RE F + K + GG L+PV + GR ELLLIL++YW+++
Sbjct: 216 TYGTHIHEKREDRENRFTSLVQKIVTQGGRCLIPVFALGRAQELLLILDEYWSQNPDLQE 275
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I + + + +N F+ + ++ L D+ G
Sbjct: 276 IPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAINNPFVFRFISNLKGIDHFDDV--G 331
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS +++G S ++F W +D KN V+ GTLA+ + +P
Sbjct: 332 PCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGYCVEGTLAKTILFEP 381
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 39/367 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
++V G ++D G + +D P ST+D +L+SH H G+LPY + +
Sbjct: 37 HIVQYKGKTVMLDAGVHPAYDGISSLPFYDDFDLSTVDILLISHFHLDHAGSLPYVLTKT 96
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLT---YSQNYHLSGKGE----------- 124
VF T P + M D + + T +S+ HLS +
Sbjct: 97 NFRGRVFMTHPTKAIYKWLMSDSVRVSNTTSEQTTQLFSETDHLSSFSQISAIDYYQTLH 156
Query: 125 --GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD 182
I + P+ AGH+LG ++ I G +++ DY+R ++HL L ++P +LIT+
Sbjct: 157 HSSIAITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREDDRHLVSASLPKHIKPDILITE 216
Query: 183 AYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--L 239
+ + PR ++E F ++ L GG VL+PV + GR ELLLILE+YW H
Sbjct: 217 STYGTASHMPRPEKEARFISLVTSILDRGGRVLMPVFALGRAQELLLILEEYWEVHERYR 276
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR----------------DNAFLLK 283
YPIY+ + ++ + ++++ M D+I F + N F ++
Sbjct: 277 QYPIYYASSLARRCMSVYQTYIHAMNDNIKALFRSKMAAIGEAAGKDGQVIGGTNPFEMR 336
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
V L + D+ G ++LA+ ++ G S ++ W D KN V+ T GTLA
Sbjct: 337 WVRSLKSLDRFDDV--GGCVMLAAPGMMQNGVSRELLERWCPDPKNGVILTGYSVEGTLA 394
Query: 344 RMLQADP 350
+ + +P
Sbjct: 395 KSILNEP 401
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 31/322 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L + S R + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 EDHLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTAYHAGHVLGACMFLIEIAGLRI 190
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 210
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRHDKEHRFTSQIHHIIKRG 249
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELQSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 174/374 (46%), Gaps = 36/374 (9%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++++ PL + L++I N ++DCG + + D S + ++ +D
Sbjct: 33 NIKIVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 92
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN 116
V++SH H G+LP+ + +G P++ T P + + + D R+ + N
Sbjct: 93 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDY---RKVQCDIKGETN 149
Query: 117 YHLSGK-------------------GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ S + + + AGH+LG +++I V+Y DY
Sbjct: 150 FFTSDDIKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDY 209
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
N ++HL + VRP +LI+++ A + ++ RE F + +T+ GG V++P
Sbjct: 210 NMTPDRHLGAARVLPGVRPTILISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIP 269
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
V + GR EL ++LE YW +LN PIYF ++ Y + F+ W ++I K+F
Sbjct: 270 VFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VE 327
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 328 RNMFEFKHIRPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGY 384
Query: 337 GQFGTL-ARMLQAD 349
GT+ AR++ +
Sbjct: 385 CVAGTVGARVINGE 398
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 184/359 (51%), Gaps = 34/359 (9%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF-- 85
++DCG + P + + + ID +L++H H GALP+ +++ VF
Sbjct: 88 IMLDCGIHPGLSGMDALPYTDMIESDEIDLLLITHFHLDHCGALPWFLEKTTFKGRVFMT 147
Query: 86 -STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKGEGIVVAPH 131
+T+ +YR LL+ Y + +S S + Y++ N+H GI +
Sbjct: 148 PATKAIYRW-LLSDYIK-VSNISSDHMLYTEKDLEKSMDKIEIINFHQEVDVSGIKFTAY 205
Query: 132 VAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQP 191
AGH+LG ++ I G V+Y D++R +++HL + + P +LI+++ H
Sbjct: 206 NAGHVLGAAMFMIEIAGVKVLYTGDFSRVEDRHLMAAEVPN-SSPDILISESTYGTHIHE 264
Query: 192 PRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTY 248
R+QRE F I + GG+ L+PV + GR ELLLIL++YW+ H + PIY+ +
Sbjct: 265 KREQREARFTTKIHDIVTRGGHCLIPVFALGRAQELLLILDEYWSCHPELHDIPIYYASS 324
Query: 249 VSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLAS 307
++ + ++++ M + I + S N F+ KH++ L N +DN D GP ++LAS
Sbjct: 325 LAKKCMAVYQTYIGAMNERIRRQIGIS--NPFVFKHISSLKN---IDNFDDIGPCVILAS 379
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS-RRVPL 365
+++G S +F W +D +N V+ GTLA+ + ++P VTM+ +++PL
Sbjct: 380 PGMMQSGLSRQLFESWCTDKRNGVVVAGYCVEGTLAKHILSEPSE---VVTMNGQKLPL 435
>gi|209420822|gb|ACI46951.1| cyclin B [Fenneropenaeus penicillatus]
Length = 475
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 149/290 (51%), Gaps = 39/290 (13%)
Query: 260 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
+EWM + +TK+F++ R N F KH+ N ++L P PK+VLAS L G++ ++
Sbjct: 1 MIEWMSEKLTKAFDSLRTNPFSFKHLKFCHNLTDLSRLP-SPKVVLASFPDLGCGYAREL 59
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 379
FV+WA++ KN ++ T R TLAR L +P + K+ RR+ L G EL +E R
Sbjct: 60 FVQWATNPKNTIILTSRTGPDTLARRLIDNPQIRTFKLLEKRRMKLEGSEL----DEHYR 115
Query: 380 LKKEEALKASLVKEEESKASLGPDNNL-----SGDPMVIDANNANASADVVEPHGGRYRD 434
+K+EE + +K EE ++S +N D +V+ N S H
Sbjct: 116 MKREEEQQQQRIKMEEVESSSDSENEDGLEAGKHDIIVLHEKAGNQSMFRSRKHH----- 170
Query: 435 ILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQ-AAMHIGGDD 490
PMFPF+E DD+GE IN +D+ I KD++ + + I +D
Sbjct: 171 --------------PMFPFHEEKIRGDDYGEYINLEDFDISSMKDDNKENLENLQIPYED 216
Query: 491 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 540
L + ++ PSK VS +TV+V ++FID+EGR+DG SI+ I+
Sbjct: 217 DDL------MDIEEPPSKCVSQTVTVRVTAQVLFIDFEGRSDGESIRKIV 260
>gi|444314085|ref|XP_004177700.1| hypothetical protein TBLA_0A03830 [Tetrapisispora blattae CBS 6284]
gi|387510739|emb|CCH58181.1| hypothetical protein TBLA_0A03830 [Tetrapisispora blattae CBS 6284]
Length = 842
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 184/805 (22%), Positives = 337/805 (41%), Gaps = 152/805 (18%)
Query: 22 LVSIDGFNFLIDCGWNDHF--DPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMK 76
+V D LID WN ++ S + S +D +LLS P+ LGA L Y
Sbjct: 19 IVRFDSVTLLIDPAWNSSTLSYSQCVKYWSNIISEVDIILLSQPNVDFLGAYSLLYYNFL 78
Query: 77 QLGLSA-PVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQ 115
+S V+ST P+ +G ++ D Y S+ +T + YSQ
Sbjct: 79 SHFISRIEVYSTLPIANIGRVSTIDLYASKGILGPYETSQLELEDIEKSFDHITSIKYSQ 138
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL--------NG 167
L + +G+ + +G GGT+W IT + E ++Y +N K+ L NG
Sbjct: 139 LVDLRARYDGLSFVAYSSGVNPGGTIWNITSNSEKILYTPQWNHTKDTILPGSGLIDTNG 198
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L + ++P+ +IT+ P R++ F+D + + L++ ++++PVD G++L+LL
Sbjct: 199 KPLSTVMKPSAIITNFEKFGSITPYRKRSHQFRDFLKERLKSHHSIMIPVDLGGKLLDLL 258
Query: 228 LILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--AF 280
+ + D++ E+S+ N PI+ + Y + Y +S LEW+ SI +++ + RDN F
Sbjct: 259 VQINDFFYENSMEKRFHNIPIFIIAYSRGRILTYARSMLEWLSASILQTW-SRRDNLSPF 317
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--- 337
K+ +I+ +L + G K+ S + ++ + +D K +L T G
Sbjct: 318 DFKNKVEVISPDQL-SKHKGQKICFVSDVDI---LIDEVISKICTDDKMTILLTNTGPSE 373
Query: 338 -------------QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEE-QTRLKKE 383
R++ + KV + L G++L +Y E+ QTR ++
Sbjct: 374 EPVLNSLNKYWLKSNSNDGRIVHCNYNMTVKKVN---KRSLKGKDLESYTEKIQTRREQR 430
Query: 384 EALKASLVKE----------------EESKASLGP-DNNLSGDPMVIDANNANASADVVE 426
++L+ L KE +E +SLG + + G+ D + + +++
Sbjct: 431 KSLELQLRKEAKMNNKSLNLVVGSASKEGSSSLGATEGRIRGEEEEEDDDEDDDEDNLIN 490
Query: 427 PHGG------RYRDILIDGFVPP-STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE-- 477
GG +DI ID V + S MFPF + + DD+G + N D I K+E
Sbjct: 491 MLGGGTKLSATKKDIPIDIIVQSDAASKHSMFPFTNSRIKKDDYGTISNFDMLIPKEESN 550
Query: 478 --------DMDQAAMHIGGDDGK-------------------------LDEGSAS----- 499
++ +A +D + ++EG +
Sbjct: 551 TEQTLSEQNIKRATASKNSNDEEDGYYVEDPSNTSNSKKRKLNRKNEVIEEGFINIDNID 610
Query: 500 -LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 558
L + P K+ + +Q+KC L FI+ D RS IL ++ P L+L+
Sbjct: 611 YLKSNYNPQKISTKSTNIQLKCFLTFINLNSLVDKRSTTIILPNLKPRNLILLGSDKSQD 670
Query: 559 EHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVD 617
+++K LK P + + + ++ + + + + +L S + ++K+ D IA +
Sbjct: 671 QNIKDVFLKRKIP-IAEMKPNKPLEFNTTVKMLDISIDPELESLLNWQKISDDNTIAHLL 729
Query: 618 AEVGKT--------------ENGMLSLLPI----STPAPPHKSVLVGDLKMADLKPFLSS 659
+ K E L P+ S+ S+ +GD+++ ++K L+
Sbjct: 730 GRLVKEVPSPNTDDKKDRLYERTKYVLKPLNDNRSSLLQAGSSLAIGDIRLTEIKRKLAL 789
Query: 660 KGIQVEFAG-GALRCGEYVTIRKVG 683
+ EF G G L V +RKV
Sbjct: 790 AKHKAEFRGEGILVVDGRVVVRKVN 814
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 174/374 (46%), Gaps = 36/374 (9%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 7 TIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN 116
V++SH H G+LP+ + +G P++ T P + + + D R+ + N
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDY---RKVQCDIKGESN 123
Query: 117 YHLSGK-------------------GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ S + + + AGH+LG +++I V+Y DY
Sbjct: 124 FFTSDDIKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDY 183
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
N ++HL + VRP VLI+++ A + ++ RE F + +T+ GG V++P
Sbjct: 184 NMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIP 243
Query: 217 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
V + GR EL ++LE YW +L+ PIYF ++ Y + F+ W ++I K+F
Sbjct: 244 VFALGRAQELCILLESYWERMALSVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VE 301
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F KH+ + E + P GP+++ ++ L G S +F +W D N+++
Sbjct: 302 RNMFEFKHIRPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCGDPLNMIIMPGY 358
Query: 337 GQFGTL-ARMLQAD 349
GT+ AR++ +
Sbjct: 359 CVAGTVGARVINGE 372
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAGLPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S ++ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +HS
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHSEF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
+PIY+ + ++ + ++++ M D+I + F E S D + + K++
Sbjct: 281 QKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S ++ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
+PIY+ + ++ + ++++ M D+I + F E S D + + K++
Sbjct: 281 QKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEP---VYRL------------- 93
ST+DA+L++H H +L Y M++ V+ T P VYR
Sbjct: 57 STVDAILVTHFHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQDFMRISSTST 116
Query: 94 -GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
GL T + +S S+ ++ Q +S G+ P+ AGH+LG ++ I G ++
Sbjct: 117 DGLFTSVELSMSLASIMTVSAHQLITVS---PGLSFTPYHAGHVLGACMFLIDIAGLRIL 173
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGG 211
Y DY+R +++HL + VRP VLI ++ + R +E F + + +R GG
Sbjct: 174 YTGDYSREEDRHLVKAEIPP-VRPDVLIVESTYGVQGHEERDTKEHRFTNLVHSIIRRGG 232
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
+ LLPV + GR ELLLILEDYW +H N PIY+ + ++ + ++++ M +I
Sbjct: 233 HALLPVFALGRAQELLLILEDYWKKHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNIR 292
Query: 270 KSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
F RDN F+ KHV+ + + E A P ++L + L+ G S ++ WA D
Sbjct: 293 SRF-AKRDNPFVFKHVSNIPQVRGWEKRIAEGPPCVILCTPGMLQPGPSRELLELWAPDP 351
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N ++ T GTLAR + +P
Sbjct: 352 RNGLIITGYSVEGTLARDIVNEP 374
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 175/368 (47%), Gaps = 31/368 (8%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPD 64
+TPL + ++ G L+DCG + P +D +L++H
Sbjct: 15 ITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVTHFH 74
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRLGL---------------LTMYDQYLSRR 106
H GALP+ +++ F +T+ +YR+ + +Y++ +
Sbjct: 75 LDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEEDLEK 134
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
S+ ++ ++H + GI HVAGH+LG ++ I G ++Y D++R +++HL
Sbjct: 135 SMEKIEVI-DFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDRHLC 193
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 225
L + V P VLI ++ R +RE F + + + GG L+P + GR E
Sbjct: 194 AAELPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLIPAFALGRAQE 252
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LLLIL++YW H + P+Y+ + ++ + ++F+ M I K + + +N F+ K
Sbjct: 253 LLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK--QIALNNPFVFK 310
Query: 284 HVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
HV+ N +D+ D GP +VLAS L+ G S ++F W +D KN + GTL
Sbjct: 311 HVS---NLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTL 367
Query: 343 ARMLQADP 350
A+ + ++P
Sbjct: 368 AKHILSEP 375
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 163/355 (45%), Gaps = 35/355 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + L+SI G N ++DCG + + D S + + +
Sbjct: 4 LKVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------QY--------- 102
V++SH H GALPY + +G P++ T P + + + D +Y
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTEYRGETNFFTS 123
Query: 103 ----LSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
R VT + ++ ++ K + + AGH+LG ++ I E VIY D+N
Sbjct: 124 QMIKTCMRKVTPVNVNEEVNVDDK---LSIQAFYAGHVLGAAMFLIKVGSESVIYTGDFN 180
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL +E ++P +LI++ A + ++ RE F + + GG VL+PV
Sbjct: 181 TTADRHLGAAHVEPGLKPDLLISETTYATTIRDSKRARERDFLKKVHDCVANGGKVLIPV 240
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW L PI+F ++ Y + F+ W + I ++F
Sbjct: 241 FALGRAQELCILLESYWERMDLTVPIFFSHGLAEKATQYYRLFISWTNEKIKRTF--VHR 298
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
N F KH+ ++P GP ++ ++ L G S +F +W SD KN+V+
Sbjct: 299 NMFDFKHIRPF--DQSFSDSP-GPMVLFSTPGMLHGGQSLRVFKKWCSDEKNMVI 350
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 35/366 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V++SH H G+LP+ + +G P++ T P + + + D R+ + N+
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLED---YRKVQCDIKGETNF 124
Query: 118 HLSGK-------------------GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
S + + + AGH+LG +++I V+Y DYN
Sbjct: 125 FTSDDIKNCMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYN 184
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL + VRP VLI+++ A + ++ RE F + +++ GG V++PV
Sbjct: 185 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPV 244
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L PIYF ++ Y + F+ W ++I K+F
Sbjct: 245 FALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 302
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 303 NMFEFKHIRPMEKGCE--DMP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYC 359
Query: 338 QFGTLA 343
GT+
Sbjct: 360 VAGTVG 365
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 171/351 (48%), Gaps = 44/351 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ VF +T+ +YR LLT + + S
Sbjct: 60 SKVDLLLVSHFHLDHAASLPYVMQHTNFRGRVFMTHATKAIYRW-LLTDFVRVTSLSSNT 118
Query: 105 -------------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
+S R+ + ++H + + +GI + AGH+LG ++ I
Sbjct: 119 SNDPNSGGTSANLYTDEDLMKSFDRIE-TVDFHSTMELDGIRFTAYHAGHVLGACLYLIE 177
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAIS 204
G ++ DY+R + +HL + S V+P +LIT++ PR ++E I
Sbjct: 178 IGGLKALFTGDYSREENRHLPVAEVPS-VKPDILITESTFGTATHEPRMEKENRMTRIIH 236
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
TL GG VL+PV + G ELLLILE+YW+++ N +YF + ++ + +++
Sbjct: 237 STLSKGGRVLMPVFALGTAQELLLILEEYWSQNKDLQNIDVYFASSLARKCLAVYQTYTN 296
Query: 263 WMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHD 318
M D I +S R N F K++ L LD D GP +V+AS L++GFS
Sbjct: 297 IMNDKIRSMASSSSYDRKNPFTFKYIKTL---KSLDRFQDFGPSVVIASPGMLQSGFSRQ 353
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPL 365
+ +WA D KN VL T GT+A+ L +PP ++T++RR+ +
Sbjct: 354 LLEKWAPDPKNTVLMTGYSVEGTMAKDLLIEPPTIPSVNNPEMTITRRLSI 404
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 31/322 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L + S R + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTSYHAGHVLGACMFLIEIAGLRI 190
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 210
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 167/359 (46%), Gaps = 36/359 (10%)
Query: 22 LVSIDGFNFLIDCGWN-DHFDPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+V I+G + DCG H D S K++ + +D ++++H H+GAL Y
Sbjct: 20 IVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDCIIITHFHLDHVGALAYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-------------QYLS------RRSVTRLTYSQ 115
+ G S PV+ T P+ L L + D Q+ S + V + Q
Sbjct: 80 TEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQFTSDHIAECMKKVIAVDLKQ 139
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+ E + + + AGH++G ++ + +++Y DYN ++HL ++ +R
Sbjct: 140 TVQVD---EDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LR 195
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
+LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+DYW
Sbjct: 196 LDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRILLDDYW 255
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+L PIYF + ++ Y K + W I ++ T NAF K+V +S L
Sbjct: 256 ERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTH--NAFDFKNVHKF-ERSML 312
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
D AP GP ++ A+ L GFS ++F WA KNLV GT+ L + P K
Sbjct: 313 D-AP-GPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLTSGKPTK 369
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 32/342 (9%)
Query: 31 LIDCG----WNDH-----FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81
++DCG +ND F + K+ +D V++SH H GALPY + +G
Sbjct: 1 MLDCGMHMGYNDERRFPDFTYITDEEGDKLTDHLDCVIISHFHLDHCGALPYMSEMVGYD 60
Query: 82 APVFSTEP----------------VYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEG 125
P++ T P V R G + + + + ++ + E
Sbjct: 61 GPIYMTHPTKAICPILLEDYRKITVERKGEENFFTSEMIKNCMKKVVVVNLHETKQVDEE 120
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
+ + + AGH+LG ++ I + V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 LEIKAYYAGHVLGAAMFHIKVGQQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTY 179
Query: 186 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY 244
A + ++ RE F + + GG VL+PV + GR EL ++LE YW ++ PIY
Sbjct: 180 ATTIRDSKRCRERDFLKKVHDCVEKGGKVLIPVFALGRAQELCILLESYWDRMNIKVPIY 239
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
F ++ Y K F+ W I K+F + N F KH+ +++ +DN GP +V
Sbjct: 240 FSLGLTEKANHYYKLFITWTSQKIKKTF--VQRNMFEFKHIKPF-DRAFIDNP--GPMVV 294
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
A+ L AG S IF +WA + N+V+ GT+ +
Sbjct: 295 FATPGMLHAGLSLQIFKKWAPNELNMVIMPGYCVAGTVGHKI 336
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 168/365 (46%), Gaps = 25/365 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVQYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY Q VF T + M D + L S+
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRIGAGASDLVTSEWLQST 143
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 144 IDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLLGA 203
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ + P +LI ++ N + R++R +F ++ +R GG L+PV + GR ELL
Sbjct: 204 EVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALGRAQELL 262
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE++W H N PIY+ + ++ + ++F+ M D + K + N F+ K++
Sbjct: 263 LILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNPFVFKYI 321
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L++ ++ +GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 322 RSLMDTKSFED--NGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAKD 379
Query: 346 LQADP 350
+ A P
Sbjct: 380 VLAKP 384
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 171/366 (46%), Gaps = 27/366 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY Q +F T + M D + L S+
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGAGASDLVTSEWLQST 143
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 144 IDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLLGA 203
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ + P +LI ++ N + R++R ++F ++ + +R GG L+PV + GR ELL
Sbjct: 204 EVPPY-SPDILIAESTNGIRELESREEREQLFTGSVHEVVRRGGRCLVPVFALGRAQELL 262
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE++W H N PIY+ + ++ + ++F+ M D + K + N F+ K++
Sbjct: 263 LILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNPFVFKYI 321
Query: 286 -TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
+L+ KS DN GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 322 HSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAK 378
Query: 345 MLQADP 350
+ A P
Sbjct: 379 DVLAKP 384
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 168/365 (46%), Gaps = 25/365 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVHYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY Q VF T + M D + L S+
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRIGAGASDLVTSEWLQST 143
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 144 IDRIETIEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLLGA 203
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ + P +LI ++ N + R++R +F ++ +R GG L+PV + GR ELL
Sbjct: 204 EVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALGRAQELL 262
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE++W H N PIY+ + ++ + ++F+ M D + K + N F+ K++
Sbjct: 263 LILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNPFVFKYI 321
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
LI+ ++ +GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 322 HSLIDTKSFED--NGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAKD 379
Query: 346 LQADP 350
+ A P
Sbjct: 380 VLAKP 384
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 35/366 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 11 LKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 70
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V++SH H G+LP+ + +G P++ T P + + + D R+ + N+
Sbjct: 71 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDY---RKVQCDIKGETNF 127
Query: 118 HLSGK-------------------GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
S + + + AGH+LG +++I V+Y DYN
Sbjct: 128 FTSDDIKNCMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYN 187
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL + VRP VLI+++ A + ++ RE F + +++ GG V++PV
Sbjct: 188 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPV 247
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +L PIYF ++ Y + F+ W ++I K+F
Sbjct: 248 FALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 305
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 306 NMFEFKHIRPMEKGCE--DMP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYC 362
Query: 338 QFGTLA 343
GT+
Sbjct: 363 VAGTVG 368
>gi|410076302|ref|XP_003955733.1| hypothetical protein KAFR_0B03020 [Kazachstania africana CBS 2517]
gi|372462316|emb|CCF56598.1| hypothetical protein KAFR_0B03020 [Kazachstania africana CBS 2517]
Length = 817
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 186/773 (24%), Positives = 334/773 (43%), Gaps = 131/773 (16%)
Query: 30 FLIDCGWNDH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSA-P 83
LID GWN+ ++ S + +D VLLS P +GA L Y +S
Sbjct: 27 ILIDPGWNNKKVSYEECVRYWSNIIPEVDIVLLSQPTIECIGAYTLLHYNFLSHFISRIE 86
Query: 84 VFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKG 123
V++T PV LG ++ D Y S+ V L +SQ L
Sbjct: 87 VYATLPVTNLGRVSTIDLYASKGVIGPYTTNQMNVEDIEKSYDHVKALKFSQMVDLKSTF 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVR 175
+G+ + + +G+ GG++W I E ++YA +N K L+ + L + +R
Sbjct: 147 DGLSLVAYNSGYTTGGSIWCIMTHSEKLLYARRWNHTKNNILDASALLGPGGKPSSALMR 206
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
P+ +IT +P +++ +MF+D + K++ +GG+ ++PV+ L+LL+++ D+
Sbjct: 207 PSAIITTLDRFGSPKPYKKRSKMFKDLLRKSVTSGGSAVIPVEIGENFLDLLVLVHDFLY 266
Query: 236 EHS-------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--FLLKHVT 286
E+S LN I ++Y + Y KS LEW+ S K++E SRD++ F L
Sbjct: 267 ENSKSGLISQLN--ILLVSYSKGRIVTYAKSMLEWLSSSAIKTWE-SRDSSSPFELGKNF 323
Query: 287 LLINKSELDNAPDGPKLVLAS---------MASLEAGFSHDIFVEWASDVKNLV--LFTE 335
+I SE+ P G K+ S + +L + I + + +V ++ E
Sbjct: 324 NVILPSEISKYP-GSKICFVSQLEPMMDEVIENLGQNETSTILLTSKVNRSEIVSEIYKE 382
Query: 336 RGQFGTLARMLQADPPPKAVKVTMSRR--VPLVGEELIAYEEEQTRLKKEEALKASLVKE 393
Q + + P + V + + PL G +L + ++ +KE+ K+ L+
Sbjct: 383 WTQLCKKPSVEEGQILPYSSSVLLKKVNIEPLRGHDLDEF-KKSIEERKEKRSKSELLLR 441
Query: 394 EESK---ASLGPDNNLSGDPMVIDANNANA-------------SADVVEPHGGRYRDIL- 436
+E+K SL D ++G M D + + A +++ G+ D L
Sbjct: 442 KEAKNPAKSLNTD-RVNGGSMDGDTSQSKAIDEDDDEEEEEEEEDNLLRILKGQSGDKLS 500
Query: 437 ------IDGFV-PPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMD--------- 480
+D +V ST MF F + DD+G +++ +I K+E+ +
Sbjct: 501 GVIEYPVDTYVQTTSTPKNKMFQFNPRKEKRDDYGTIVDYSMFISKEEEEEESKNANKRP 560
Query: 481 QAAMHIGGD-------DGKLDEGSAS----------LILDAKPSKVVSNELTVQVKCLLI 523
Q + ++ + D + GS L D K+ V + C +
Sbjct: 561 QESQNVSNNLSKRSRRDTNVMNGSTRNAENFDNIDYLNTDKDAMKIALANEQVILNCSIA 620
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH----CLKHVCPHVYTPQIE 579
FI+ E D RS I + P K++L+ A E + ++ ++ PQ+
Sbjct: 621 FINMENVVDQRSTSIIWPSLKPKKMILL-----APETFQDQNTVTLMEKKGIEMFAPQLN 675
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGK--TENGM---LSLLPI 633
E I+ ++ + A + L +L + ++K+G D+ +A V V + N M L L PI
Sbjct: 676 EYIEFSTTIKALDISLDPELDKLLKWQKIGDDHTVAHVVGRVVRDTIHNSMRNKLVLKPI 735
Query: 634 STPAPPH-KSVL--VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 682
S+ H KS L +G++++A++K L+ +G EF G G L V +R++
Sbjct: 736 SSGTKMHTKSGLLSIGEVRLAEVKRKLTEQGHVAEFQGEGTLVVNNEVMVRRI 788
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 175/371 (47%), Gaps = 31/371 (8%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
+++V PL + +V+I N + DCG + + D S + + ID
Sbjct: 2 TIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKIID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTY 113
V+++H H GALPY + +G P++ T P + + + D + R+ T
Sbjct: 62 CVIITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKITVDRKGDTNFFT 121
Query: 114 SQ------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
Q + H + K E + + + AGH+LG ++ E V+Y DYN
Sbjct: 122 PQMIKDCMKKVIPIDLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMT 181
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ V+P VLIT+ A + ++ RE F + + + GG VL+PV +
Sbjct: 182 PDRHLGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFA 240
Query: 220 AGRVLELLLILEDYWAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
GRV EL ++++ YW + +L++ PIYF ++ Y K F+ W I ++F + N
Sbjct: 241 LGRVQELCILIDSYWEQMNLSHVPIYFSAGLAEKANLYYKLFINWTNQKIKQTF--VKRN 298
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F KH+ +S L +AP G ++ A+ L AG S ++F +WA + N+ +
Sbjct: 299 MFDFKHIKPF--QSHLVDAP-GAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCV 355
Query: 339 FGTLARMLQAD 349
GT+ L A+
Sbjct: 356 VGTVGNKLLAN 366
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ + T++VKC + + + AD + I ++ P ++LVHG E L Q +K +
Sbjct: 375 IDKKTTLEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEM 434
Query: 570 CPHVYTPQIEETIDVTS 586
+ Y P TI + +
Sbjct: 435 GVNCYYPANGVTITIDT 451
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 199/416 (47%), Gaps = 39/416 (9%)
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------ 96
A ID +L+SH H GALP+ +++ F +T+ +YR L
Sbjct: 57 ADEIDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADCIKVSNIGSTS 116
Query: 97 --TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
+Y + S+ ++ N+H + GI + AGH+LG ++ I G ++Y
Sbjct: 117 SNNLYTEADLEASMDKIEVI-NFHEEKEINGIRFWCYHAGHVLGAAMFFIEIAGVKILYT 175
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
D++R++++HL + S V+P VLI ++ H RQ RE F + + + GG
Sbjct: 176 GDFSRQEDRHLMSAEIPS-VKPDVLIIESTYGTHIHEKRQDREHRFTHLVQEIVTRGGRC 234
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M + I +
Sbjct: 235 LIPVFALGRAQELLLILDEYWGLHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRRQ 294
Query: 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
S N F+ KH++ L + D+ GP +++A+ +++G S ++F W D KN V
Sbjct: 295 IAIS--NPFVFKHISNLKSIDHFDDV--GPCVIMATPGMMQSGLSRELFEAWCGDTKNGV 350
Query: 332 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL-VGEELIAYEEEQTRLKKEEALKA-- 388
+ GTLA+ + ++ P+ V +++PL + + I++ + E ++A
Sbjct: 351 IIAGYCVEGTLAKQILSE--PQEVTSMNGQKMPLKMSVDYISFSAHTDYQQTSEFIRALK 408
Query: 389 ----SLV---KEEESKASLGPDNNLSGDPMVIDANN-ANASADVVEPHGGRYRDIL 436
LV + E S+ + G+ + +D N AN A ++ G R ++
Sbjct: 409 PPNIILVHGEQNEMSRLKAAIEREYEGEDLKMDVYNPANGHAVTLKFRGERLAKVM 464
>gi|320034772|gb|EFW16715.1| cleavage and polyadenylylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 1026
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 177/441 (40%), Gaps = 132/441 (29%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL------ 80
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 81 -------------------SAPVFST--------------------EPVYRLGLLTMYDQ 101
SAP+ ST +P G LT D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSNSLPTQDPTAPAGALTEGDT 146
Query: 102 YLSRRS-------------------VTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 137
S + + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 185
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 186 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 234
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAANGPD 326
Query: 235 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 273
E+SL N +Y ST+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNATLYLAGKKVHSTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 274 ---------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 314
+ + +A F +H+ ++ K++L+N +GPK+++AS ASL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDASLDWG 446
Query: 315 FSHDIFVEWASDVKNLVLFTE 335
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 113/346 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 496
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 497 ----------------------SASLILDAK-----------------PSKVVSNELTVQ 517
S SL L+ P+K V
Sbjct: 697 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 572
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 616
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 617 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 640
D E + ML + P+ PP+
Sbjct: 877 AATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANETLIKKEVFPLLDVLPPNLAAATRS 936
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|303310723|ref|XP_003065373.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
gi|240105035|gb|EER23228.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
Length = 1026
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 176/441 (39%), Gaps = 132/441 (29%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL------ 80
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 81 -------------------SAPVFST--------------------EPVYRLGLLTMYDQ 101
SAP+ ST +P G LT D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSNSLPTQDPTAPAGALTEGDT 146
Query: 102 YLSRRS-------------------VTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 137
S + + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 185
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 186 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 234
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAADGPD 326
Query: 235 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 273
E+SL N +Y ST+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNATLYLAGKKVHSTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 274 --------TSRDNA---------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 314
TS + F +H+ ++ K++L+N +GPK+++AS ASL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDASLDWG 446
Query: 315 FSHDIFVEWASDVKNLVLFTE 335
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 128/346 (36%), Gaps = 113/346 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 496
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 497 ----------------------SASLILD-----------------AKPSKVVSNELTVQ 517
S SL L+ + P+K V
Sbjct: 697 GDRLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 572
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 616
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 617 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 640
D E + ML + P+ PP+
Sbjct: 877 AATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANETLIKKEVFPLLDVLPPNLAAATRS 936
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 178/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P S +D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSQVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHL-------------SG 121
VF T P + + D S ++L Y++ HL +
Sbjct: 100 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQLVYTEQDHLNTFPMIEAIDYYTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+ VLIT
Sbjct: 160 TISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAQVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + PR +RE +I+ L GG VL+PV + GR ELLLIL++YWA+H
Sbjct: 220 ESTYGIATHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWAKHKEY 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D+A + K +
Sbjct: 280 QKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDSAGKGGPWDFKFIR 339
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + ++ G ++LAS L+ G S ++ WA + KN V+ T GT+A+ L
Sbjct: 340 SLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPNEKNGVIITGYSVEGTMAKQL 397
Query: 347 QADPPPKAVKVTMSR 361
+ P+ ++ M+R
Sbjct: 398 MQE--PEQIQAVMTR 410
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 168/350 (48%), Gaps = 29/350 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
+V G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 55 VVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCEEIDVVLITHFHLDHCGALPYFCEQ 112
Query: 78 LGLSAPVFSTEPVYRLGLLTMYD--------------QYLSRRSVTRLTYSQNYHLSGKG 123
+F T + M D ++L +S + YH
Sbjct: 113 TAFKGRIFMTSATKAFYKMVMNDFLRVGASAEDIVNNEWL--QSTIEKIETVEYHEEVTV 170
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI P AGH+LG ++ + G V+Y D++R ++HL G + + P +LI ++
Sbjct: 171 NGIHFQPFNAGHVLGAALFMVDIAGMKVLYTGDFSRVPDRHLLGAEVPPY-SPDILIAES 229
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
N + R++RE +F + ++ GG L+PV + GR ELLLILE+YW H +
Sbjct: 230 TNGIRELESREERETLFTTWVHDVVKGGGRCLIPVFALGRAQELLLILEEYWEAHKELQH 289
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++F+ M D + + E R N F+ K++ L++ ++ G
Sbjct: 290 IPIYYASSLAQRCMKLYQTFVSAMNDRVKEQHENHR-NPFVFKYIQSLLDTRSFEDT--G 346
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +VLAS L++G S ++F W D +N ++ GT+A+ + + P
Sbjct: 347 PCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIAKEILSKP 396
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 177/389 (45%), Gaps = 43/389 (11%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 37 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 96
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S ++ Y++ +YH +
Sbjct: 97 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 156
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 157 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 216
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 217 ESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHGEY 276
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
+PIY+ + ++ + ++++ M D+I + F E S D + + K++
Sbjct: 277 QKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDFKYIR 336
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+A+ +
Sbjct: 337 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNEKNGVIITGYSVEGTMAKQI 394
Query: 347 QADP-------PPKAVKVTMSRRVPLVGE 368
+P PP A R V E
Sbjct: 395 MQEPDQIQAVMPPPARDADPEERARSVAE 423
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+D +L++H H AL Y ++ V+ T P L M D S +
Sbjct: 48 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSSSTS 107
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 108 DALFSPLDIQMSLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 167
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + +RP VLI ++ + R+++E+ F + + +R GG+VL
Sbjct: 168 DYSREEDRHLVKAEVPP-IRPDVLIIESTYGVQTLEGREEKELRFTNLVHSIIRRGGHVL 226
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ ++ ++++ M ++ F
Sbjct: 227 LPTFALGRAQELLLILDEYWKKHPDLQNVPIYYASSLARKSMAVYQTYIHTMNSNVRSRF 286
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ L E A P +VLAS + +G S ++ WA D +N
Sbjct: 287 -AKRDNPFVFKHISNLPQSKGWERKIAEGPPCVVLASPGFMTSGASRELLELWAPDSRNG 345
Query: 331 VLFTERGQFGTLARMLQADP 350
V+ T GT+AR +Q++P
Sbjct: 346 VIITGYSIEGTMAREIQSEP 365
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 46/385 (11%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLS---------HPDTLHLG 69
+++ G ++D G + +D P ST+D +L+S H H
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISQSELRYPMRHFHIDHAA 100
Query: 70 ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ---------- 115
+LPY + + VF T P + + D S T+ Y++
Sbjct: 101 SLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQTTQPLYTEQDHLNTFPQI 160
Query: 116 ---NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
+YH + I + P+ AGH+LG ++ I G ++ + DY+R +++HL +
Sbjct: 161 EAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPK 220
Query: 173 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
V+ VLIT++ + + PR +RE +I+ L GG LLPV + GR ELLLIL+
Sbjct: 221 GVKIDVLITESTYGIASHVPRLEREQALMKSITNILNRGGRALLPVFALGRAQELLLILD 280
Query: 232 DYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA---------- 279
+YW +H+ YPIY+ + ++ + ++++ M D+I + F A
Sbjct: 281 EYWGKHAEFQKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRLFRERMAEAETSGGAGAGG 340
Query: 280 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
+ K++ L N D+ G ++LAS L+ G S ++F WA + KN V+ T
Sbjct: 341 PWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELFERWAPNDKNGVIITGYSV 398
Query: 339 FGTLARMLQADPPPKAVKVTMSRRV 363
GT+AR + + P+ ++ MSR +
Sbjct: 399 EGTMARQIMKE--PEQIQAVMSRSI 421
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 170/370 (45%), Gaps = 39/370 (10%)
Query: 29 NFLIDCGWNDHFDP-SLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
N + DCG + F S L ++ S ID +L++H H A+P+ + + VF
Sbjct: 74 NVMFDCGIHPGFSGLSSLPYFDEIDVSAIDVLLVTHFHLDHCAAVPFLVNRTNFKGRVFM 133
Query: 87 TEPVYRLGLLTMYD-QYLSRRSVTRLTYSQ---------------------------NYH 118
T + + M D LS R + S+ ++H
Sbjct: 134 THATKAIFHMLMSDFVRLSARQQPKAKGSEEKEEEEDESQLWDAKDLKAAMDKIEVIDFH 193
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+GI V P+ AGH+LG +++ G V+Y DY+R ++HL + P V
Sbjct: 194 QEINIDGIKVTPYRAGHVLGACQFEVNVGGCRVLYTGDYSRVADRHLPAADIPKKT-PHV 252
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
+I ++ + P+++RE F D I L GG LLPV + GR ELLLILEDYW +H
Sbjct: 253 VIVESTYGVSPHTPKEEREARFTDKIHGILGRGGKCLLPVVALGRAQELLLILEDYWEKH 312
Query: 238 S--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
+ P+Y + ++ + ++++ + I + FE N F KHV L S+LD
Sbjct: 313 PEMSHVPVYQASALARKAMTVFETYINVLNADIKRQFEEK--NPFNFKHVQSLNRASDLD 370
Query: 296 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAV 355
GP +VLA+ + L++G S ++F W N V+ + GTLAR + +D K V
Sbjct: 371 GNT-GPCVVLATPSMLQSGTSRELFENWCESSDNGVVICDFAVQGTLAREILSD--VKTV 427
Query: 356 KVTMSRRVPL 365
K R + L
Sbjct: 428 KARDGRELQL 437
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 173/359 (48%), Gaps = 39/359 (10%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF- 85
G N L + D+ DP ID +L+SH H G LP+ + + VF
Sbjct: 44 GINGLNGLPFMDYTDPD----------KIDILLISHFHLDHCGGLPWFLTKTQFKGRVFM 93
Query: 86 --STEPVYRLGLLTMYDQYLSRRSVTRLTYSQN-------------YHLSGKGEGIVVAP 130
+T+ +YR LL+ Y + +S V L +++ +H GI
Sbjct: 94 TYATKAIYRW-LLSDYIK-VSNVGVEELLFTEKDLEETLDRIETVKFHAEKHINGIKFCA 151
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
+ AGH+LG + + G V++ D++R +++HL + +P +LI ++ H
Sbjct: 152 YHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLMAAEVPP-QKPDILIMESTYGTHLH 210
Query: 191 PPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R++RE F I + GG L+PV + GR ELLLIL+DYWA+H + PIY+ +
Sbjct: 211 EKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIPIYYAS 270
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + +++ M I K+ T N F +H++ L D+ GP +VLAS
Sbjct: 271 TLAKKCMSVYQTYTNAMNSKIQKAITTR--NPFQFRHISNLKGMEAFDDDI-GPSVVLAS 327
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS-RRVPL 365
+++G S ++F +W ++ +N V+ GTLA ++ +P VTMS +++PL
Sbjct: 328 PGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIKTEPDE---IVTMSGQKLPL 383
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 173/331 (52%), Gaps = 30/331 (9%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRL 111
ID +L+SH H GALP+ + + F +T+ +YR LL Y + +S ++
Sbjct: 1 IDLLLVSHFHWYHCGALPWFLLKTTFKGRCFMTHATKAIYRW-LLADYIK-VSNIGTEQM 58
Query: 112 TYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
Y++ N+H + GI + AGH+LG ++ I G V+Y D++
Sbjct: 59 LYTEADLEASMEKIETINFHEEKEVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFS 118
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
R++++HL + + + P VLI ++ H R++RE F + + GG L+PV
Sbjct: 119 RQEDRHLMAAEIPN-IHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPV 177
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YW+ H + PIY+ + ++ + ++++ M + I + + +
Sbjct: 178 FALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRR--QIT 235
Query: 276 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+N F+ KH++ N +++ D GP +V+AS +++G S ++F W +D KN V+
Sbjct: 236 INNPFVFKHIS---NLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIA 292
Query: 335 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
GTLA+ + ++ P+ + + +++PL
Sbjct: 293 GYCVEGTLAKTILSE--PEEISTMVGQKLPL 321
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 173/359 (48%), Gaps = 39/359 (10%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF- 85
G N L + D+ DP ID +L+SH H G LP+ + + VF
Sbjct: 44 GINGLNGLPFMDYTDPD----------KIDILLISHFHLDHCGGLPWFLTKTQFKGRVFM 93
Query: 86 --STEPVYRLGLLTMYDQYLSRRSVTRLTYSQN-------------YHLSGKGEGIVVAP 130
+T+ +YR LL+ Y + +S V L +++ +H GI
Sbjct: 94 TYATKAIYRW-LLSDYIK-VSNVGVEELLFTEKDLEETLDRIETVKFHAEKHINGIKFCA 151
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
+ AGH+LG + + G V++ D++R +++HL + +P +LI ++ H
Sbjct: 152 YHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLMAAEVPP-QKPDILIMESTYGTHLH 210
Query: 191 PPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R++RE F I + GG L+PV + GR ELLLIL+DYWA+H + PIY+ +
Sbjct: 211 EKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIPIYYAS 270
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + +++ M I K+ T N F +H++ L D+ GP +VLAS
Sbjct: 271 TLAKKCMSVYQTYTNAMNSKIQKAITTR--NPFQFRHISNLKGMEAFDDDI-GPSVVLAS 327
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS-RRVPL 365
+++G S ++F +W ++ +N V+ GTLA ++ +P VTMS +++PL
Sbjct: 328 PGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIKTEPDE---IVTMSGQKLPL 383
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 34/358 (9%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG ++DH D SL+ ++D V+++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY---HLSGKGEGIV---- 127
+ G + P++ T P L L + D + V R + + H+S E ++
Sbjct: 80 TEVCGYNGPIYMTYPTKALAPLMLED--FRKVLVDRRGEEEQFTSLHISQCMEKVIAVDL 137
Query: 128 -----------VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
+ + AGH+LG ++ ++Y DYN ++HL ++ +
Sbjct: 138 KQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDR-LEL 196
Query: 177 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
+LIT++ A + + RE F A+ + + GG VL+P + GR EL ++L+DYW
Sbjct: 197 DLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWE 256
Query: 236 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
+L PIYF ++ Y K + W + +++ T NAF KHV L
Sbjct: 257 RMNLKVPIYFSAGLTIQANLYYKILISWTSQKVKETYATR--NAFDFKHVHNF--DRSLI 312
Query: 296 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
NAP GP ++ A+ + GFS ++F +WA NL+ GT+ L + P K
Sbjct: 313 NAP-GPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMSGKPTK 369
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 169/366 (46%), Gaps = 27/366 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY Q +F T + M D + L S+
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGAGASDLVTSEWLQST 143
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 144 IDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLLGA 203
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ + P +LI ++ N + R++R +F ++ +R GG L+PV + GR ELL
Sbjct: 204 EVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALGRAQELL 262
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE++W H N PIY+ + ++ + ++F+ M D + K + N F+ K++
Sbjct: 263 LILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNPFVFKYI 321
Query: 286 -TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
+L+ KS DN GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 322 HSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAK 378
Query: 345 MLQADP 350
+ A P
Sbjct: 379 DVLAKP 384
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 169/366 (46%), Gaps = 27/366 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY Q +F T + M D + L S+
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGAGASDLVTSEWLQST 143
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 144 IDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLLGA 203
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ + P +LI ++ N + R++R +F ++ +R GG L+PV + GR ELL
Sbjct: 204 EVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALGRAQELL 262
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE++W H N PIY+ + ++ + ++F+ M D + K + N F+ K++
Sbjct: 263 LILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNPFVFKYI 321
Query: 286 -TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
+L+ KS DN GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 322 HSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAK 378
Query: 345 MLQADP 350
+ A P
Sbjct: 379 DVLAKP 384
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 175/356 (49%), Gaps = 51/356 (14%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMY---------- 99
S +D +L+SH H +LPY M+ + VF +T+ +YR LL+ +
Sbjct: 58 SKVDILLISHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRW-LLSDFVRVTSIGGGG 116
Query: 100 DQYLSR-----------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142
D L+ RS R+ + +YH + + EGI + AGH+LG ++
Sbjct: 117 DSRLNSGNETATSSNLYTDDDLIRSFDRIE-TIDYHSTIEVEGIRFTAYHAGHVLGACMY 175
Query: 143 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQD 201
+ G V++ DY+R +++HL + +RP +LIT++ PR ++E
Sbjct: 176 FVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTATHEPRLEKEARMTK 234
Query: 202 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYV 257
I TL GG +L+PV + GR ELLLILE+YW++ H++N ++F + ++ +
Sbjct: 235 IIHSTLLKGGRILMPVFALGRAQELLLILEEYWSQNEDLHNIN--VFFASSLARKCMAVY 292
Query: 258 KSFLEWMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEA 313
+++ M D+I ++ + N F KH+ L+ LD D GP +V+A+ L+
Sbjct: 293 QTYTNIMNDNIRHGVSSASGGKSNPFQFKHIKLI---RSLDKFQDIGPCVVVAAPGMLQN 349
Query: 314 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP----PPKAVKVTMSRRVPL 365
G S ++ WA D KN V+ T GT+A+ L +P + VT+ RR+ +
Sbjct: 350 GVSRELLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQSSQNADVTIPRRMAI 405
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 168/359 (46%), Gaps = 36/359 (10%)
Query: 22 LVSIDGFNFLIDCGWNDHF-DPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+VS+ G + DCG + + D S+++ T ID V+++H H+GALPY
Sbjct: 17 IVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLDHVGALPYF 76
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRR----------------SVTRLTYSQ 115
+ G PV+ T P L + + D + RR V + Q
Sbjct: 77 TEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLHIQQCMKKVIAVDLRQ 136
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+S + + + AGH+LG ++ + V+Y DYN ++HL ++ ++
Sbjct: 137 TIRVS---KDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGAAQIDR-LK 192
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LIT++ A + R +E F + + + GG VL+P+ + GR EL ++L++YW
Sbjct: 193 PDLLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELCILLDEYW 252
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+L PIYF ++ + Y K + W I ++ T NAF KHV ++++L
Sbjct: 253 ERMNLKVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTR--NAFDFKHV-FPFDRTQL 309
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
D +GP ++ A+ L G S ++ WA +NL++ GT+A+ L + P +
Sbjct: 310 DG--NGPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSGKPTR 366
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 498 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
A + KP++V V T+ V+C + + + D + I ++ V P ++LVHG
Sbjct: 356 AQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPRNVILVHGEKL 415
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 600
+ LK + + P + ++V S C + V+ S++L+
Sbjct: 416 KMDVLKARINNELGMPCHNPANHDVVEVPSH-CLFNVEASKELV 458
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 159/328 (48%), Gaps = 22/328 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQ 101
ST+D +L+SH H +LPY M + VF T P R+G +
Sbjct: 72 STVDVLLISHFHLDHAASLPYVMTKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNVHNSPD 131
Query: 102 YLSRRSVTRLTYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
L S +YS+ +YH + GI + P+ AGH+LGG ++ I G +++ DY
Sbjct: 132 NLYTESDHLSSYSRIEAIDYHTTLTHAGISITPYHAGHVLGGAMFFIEIAGLKILFTGDY 191
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
+R ++HL + +P +LI ++ PR ++E ++ L GG VL+P
Sbjct: 192 SREDDRHLVSAEV-PHQKPDLLICESTYGTATHMPRLEKEARLMKMTTEILNRGGRVLMP 250
Query: 217 VDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FE 273
V + GR ELLLIL++YW +H +YPIY+ + ++ +D ++++ M D I ++ FE
Sbjct: 251 VFALGRAQELLLILDEYWEKHPAYQSYPIYYASNLARKCMDVYRTYINTMNDKIKRAMFE 310
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
N + + V L ++ G ++LAS L+ G S ++ W D +N ++
Sbjct: 311 GEGRNPWDFRWVRSLKTIDRFEDV--GGCVMLASPGMLQNGVSRELLERWCPDPRNGLVI 368
Query: 334 TERGQFGTLARMLQADPPPKAVKVTMSR 361
T GT+A+ + +P VT +R
Sbjct: 369 TGYSVEGTMAKQIMNEPTEIPAVVTANR 396
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 164/352 (46%), Gaps = 30/352 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++ PL + +V+I+G ++DCG +ND D S L ID
Sbjct: 1 MKIIPLGAGQDVGRSCIIVNIEGRTIMLDCGMHMGYNDQRRFPDFSALSKTGDFNKLIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD---------------QY 102
+++SH H GALP+ + P++ T+P + + + D Y
Sbjct: 61 IIISHFHLDHTGALPFFTEICKYDGPIYMTKPTKAVIPILLEDFRKISAPKSSDGKFFSY 120
Query: 103 LSRRSVTRLTYSQNYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
++ + + N++ + K E + P+ AGH++G ++ + V+Y DYN
Sbjct: 121 QDIQNCLKKIITINFNETYKHDENFFITPYYAGHVIGAAMFHVQVGSRSVVYTGDYNMTP 180
Query: 162 EKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSA 220
++HL + +RP +LIT++ Y ++ + + F A+ + GG VL+P+ +
Sbjct: 181 DRHLGAASIPC-LRPDLLITESTYGSITRDCRKSKEREFFKAVLDCVSNGGKVLIPIFAL 239
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL L+L+ +W L PIYF + ++ + K FL + ++I K+ N F
Sbjct: 240 GRAQELCLLLDSHWERMQLKVPIYFSSGLTEKANNIYKQFLSYTNETIKKN--AFNHNVF 297
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
KH T K LD + P ++ AS L +G S +F EW +D KNLV+
Sbjct: 298 DFKHTTTF-QKHFLD--LNIPMVLFASPGMLHSGMSLKVFKEWCTDPKNLVI 346
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 171/369 (46%), Gaps = 28/369 (7%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
S+ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 SLSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL--------------LTMYDQYLS 104
H H GALP+ +++ F +T+ +YR+ L +Y +
Sbjct: 70 HFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLYTEDDL 129
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+S+ ++ + ++ + GI P+VAGH+LG + I G V+Y D++ +++H
Sbjct: 130 EKSMAKIE-TIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + + P VLIT++ R RE F + + GG L+P + G
Sbjct: 189 LCAAEIPP-ITPQVLITESTYGTQTHEERSVREKRFTQMVHDIVTRGGRCLIPAFAIGPA 247
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + + N F+
Sbjct: 248 QELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAVKNPFI 305
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
KHV+ L + ++A GP +VLA+ L++GFS ++F W SD KN + GT
Sbjct: 306 FKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYCVEGT 363
Query: 342 LARMLQADP 350
LAR + +P
Sbjct: 364 LARHILTEP 372
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 162/317 (51%), Gaps = 29/317 (9%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVTRL 111
ID +L+SH H A+PY +++ V+ T P +Y++ LL+ Y + + +
Sbjct: 83 IDLLLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKV-LLSDYVKVSNISVAEDM 141
Query: 112 TYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + NYH + GI + AGH+LG ++ + G ++Y D++
Sbjct: 142 PFDEQDLNASLPKIEHINYHQKIEHNGIKFCCYNAGHVLGAAMFMVEIAGVRILYTGDFS 201
Query: 159 RRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 216
R++++HL G ES V VLI ++ + PR +RE F +I + +R GG L+P
Sbjct: 202 RQEDRHLMGA--ESPPVDVDVLIIESTYGVQVHEPRLERERRFTTSIHEIVRRGGRCLIP 259
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW H PIY+ + ++ + +++++ M + I F
Sbjct: 260 VFALGRAQELLLILDEYWIAHPELHGIPIYYASALAKKCMKVYQTYIQMMNERIRAQFAV 319
Query: 275 SRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
S N F+ KH+ + + +DN D GP + +AS L++G S +F W SD +N V+
Sbjct: 320 S--NPFIFKHIK---DINGIDNFNDNGPCVFMASPGMLQSGLSRQLFERWCSDRRNGVVI 374
Query: 334 TERGQFGTLARMLQADP 350
GTLA+ + ++P
Sbjct: 375 PGYSVEGTLAKHIMSEP 391
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 43/366 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D +S S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 TRL----------TY----SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
T++ TY S +++ + G+ + P+ AGH+LG ++ + G +++
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R ++HL + + V+ VLIT++ + PR +RE AI+ L GG
Sbjct: 194 GDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRA 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+I +
Sbjct: 254 LLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRL 313
Query: 272 F-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
F +T R A+ K V L + D+ G ++LAS +++G S ++
Sbjct: 314 FAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTSRELL 371
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAYEEEQ 377
WA D +N V+ T GT+A+ + +P P + + + R P G+ E EQ
Sbjct: 372 ERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR----ENEQ 425
Query: 378 TRLKKE 383
T + +
Sbjct: 426 TMIPRR 431
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 173/351 (49%), Gaps = 27/351 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA---STIDAVLLSHPDTLHLGALPYAMKQL 78
L++ G ++DCG + P T D +L+SH H G LP+ + +
Sbjct: 30 LLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDLILISHFHLDHCGGLPHLLLKT 89
Query: 79 GLSAPVF---STEPVYRLGLLTMY---------DQ--YLSRRSVTRLTY--SQNYHLSGK 122
G + + +T+ +YR L DQ Y R V L + + ++H +
Sbjct: 90 GAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLYSDRDIVASLDHIDTIDFHQELE 149
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD 182
GI + + AGH+LG ++ I G ++Y D++R++++HL + +RP VLIT+
Sbjct: 150 VNGIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEIPP-IRPDVLITE 208
Query: 183 AYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--L 239
A +H R++RE F + + GG L+P + GR EL+LIL++YW H
Sbjct: 209 ATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDNHPELH 268
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
+ PIY+ + ++ + ++++ M + I + + +N F +H++ L + D++
Sbjct: 269 DIPIYYASQLARKCMAVYQTYIYAMNERIRN--QLASNNPFCFRHISNLKSIEHFDDS-- 324
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 325 GPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLP 375
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 173/351 (49%), Gaps = 27/351 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA---STIDAVLLSHPDTLHLGALPYAMKQL 78
L++ G ++DCG + P T D +L+SH H G LP+ + +
Sbjct: 30 LLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDLILISHFHLDHCGGLPHLLLKT 89
Query: 79 GLSAPVF---STEPVYRLGLLTMY---------DQ--YLSRRSVTRLTY--SQNYHLSGK 122
G + + +T+ +YR L DQ Y R V L + + ++H +
Sbjct: 90 GAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLYSDRDIVASLDHIDTIDFHQELE 149
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD 182
GI + + AGH+LG ++ I G ++Y D++R++++HL + +RP VLIT+
Sbjct: 150 VNGIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEIPP-IRPDVLITE 208
Query: 183 AYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--L 239
A +H R++RE F + + GG L+P + GR EL+LIL++YW H
Sbjct: 209 ATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDNHPELH 268
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
+ PIY+ + ++ + ++++ M + I + + +N F +H++ L + D++
Sbjct: 269 DIPIYYASQLARKCMAVYQTYIYAMNERIRN--QLANNNPFCFRHISNLKSIEHFDDS-- 324
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP +V+AS +++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 325 GPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLP 375
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 171/362 (47%), Gaps = 29/362 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVAST-----IDAV 58
++V PL + LV++ G + DCG + ++ + P ++VA ID
Sbjct: 10 IRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQGPLTDHIDLA 69
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------QYLSRR 106
+++H H GALPY +Q+G P++ T P + + + D + +R
Sbjct: 70 IITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLEDYRKIAVSRQGEKNFFTRD 129
Query: 107 SV-TRLTYSQNYHLSGK---GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
+ T L + L + + + AGH+LG ++ + + V+Y DYN +
Sbjct: 130 DIKTCLNKATTIDLHQTVVIDQDFEIKAYYAGHVLGAAMFYVRVGNQSVVYTGDYNMSPD 189
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HL ++ P V+I+++ A + R+ RE I++ ++ GG VLLPV + G
Sbjct: 190 RHLGAAWIDR-CEPDVIISESTYATTIRDSRRAREHDLLTKITQCVQRGGKVLLPVFALG 248
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R EL ++LE +W + PIYF T +++ +Y K F+ W + ++F N F
Sbjct: 249 RAQELCILLETHWQRTGMRVPIYFSTGLTARANEYYKLFITWTNQKLKETF--VERNLFD 306
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+HV ++S L++A GP+++ A+ L AG S F W D +N+V+ GT
Sbjct: 307 FQHVQPF-DRSYLEHA--GPQVLFATPGMLHAGTSLLAFTHWCEDPRNMVILPGYCTAGT 363
Query: 342 LA 343
+
Sbjct: 364 VG 365
>gi|410730217|ref|XP_003671288.2| hypothetical protein NDAI_0G02680 [Naumovozyma dairenensis CBS 421]
gi|401780106|emb|CCD26045.2| hypothetical protein NDAI_0G02680 [Naumovozyma dairenensis CBS 421]
Length = 846
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 189/830 (22%), Positives = 336/830 (40%), Gaps = 169/830 (20%)
Query: 30 FLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--LPYA--MKQLGLSA 82
LID GW ++ S+ + + V +D +LLS P LGA L Y +
Sbjct: 28 ILIDPGWASSAVSYEDSV-RYWTNVIPEVDIILLSQPTGECLGAYTLLYTNFLSHFKSRI 86
Query: 83 PVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGK 122
V+ST P+ LG ++M + Y S+ ++ L YSQ L K
Sbjct: 87 EVYSTLPIANLGRVSMIESYASKGIIGPYNTNRLDLEDIEKSFDHISILKYSQTVDLRSK 146
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESF 173
+G+ + + +G GGT+W I+ E +IY +N ++ LN G L S
Sbjct: 147 FDGLSLIAYNSGSNPGGTIWSISTYSEKLIYVHRWNHTRDSILNPASLLDQTTGKPLASL 206
Query: 174 VRPAVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD-SAGRVLELLLIL 230
++P+ +IT D + ++ P +++ ++F+ + +L G+VL+PV+ +G+ L++L+I+
Sbjct: 207 LKPSGVITTLDKFGSI--DPFKRRVKLFKGTVWNSLNNNGSVLIPVEMGSGKFLDILVII 264
Query: 231 EDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--AFLLK 283
++ E+ N P+ ++Y + Y KS LEW+ S+ K++E+ N F L
Sbjct: 265 HEFLFENGKNPFYKHLPVLLVSYSKGRALTYTKSMLEWLSSSLLKTWESRSSNPSPFDLG 324
Query: 284 HVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+ ++ EL P+ K+ L S L+ +H + K +L T G
Sbjct: 325 NRFKVVTSDELSKYPNS-KICLVSNVDILLDETVAHLCDSKSQHQNKTTILLTSNMNNGI 383
Query: 342 LARMLQADPPPKA-----VKVTMSRRV------PLVGEELIAYEEE-QTRLKKEEALKAS 389
L M + K +K + V PL EEL Y+ + R KE+ + S
Sbjct: 384 LQNMKECWEEQKVKEGDLIKFNKTISVHNIQLDPLNDEELSEYKSVLEERKNKEKLIIES 443
Query: 390 LVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEP---------------------- 427
+ + + L D L G ++DA+ ++ D+
Sbjct: 444 IKRGKHKDKILTLD--LHGKDSILDASRKSSIIDLTNADEEEEDEEEDEDEDDALSSKAL 501
Query: 428 HGGRYR---DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVIN---------------- 468
+ R DI+I +PP + MF FY + DD+G VI+
Sbjct: 502 YAKRIHTPVDIIIQPNLPPKSK---MFQFYPTKLKTDDYGTVIDFTMLIPKDDEDDKDFE 558
Query: 469 --------PDDYIIKDEDMDQAAMHIG--GDDGKLDEGSASLILDAK------------- 505
D K +D + M + KL++ + + I D+
Sbjct: 559 SELTKKRRIDRLQNKGQDTEDMNMPVAQFTKKEKLNQNNNNTITDSSFIQPNFDNIDFLK 618
Query: 506 ----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 561
P K + + C + +I+ E D RS I + P KL+L L
Sbjct: 619 TDNTPQKRTLTKKNHIINCSISYINLESLVDQRSASVIWPSLKPRKLILFGPDKIQDRTL 678
Query: 562 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEV 620
+ +K P + + + T+ + A+ + + +L + ++++ D Y IA V +
Sbjct: 679 MKILVKKGVDVTALP-LNKPTEFTTSIKAFDISIDPELDQILNWQRISDGYTIAHVTGHL 737
Query: 621 GK----------------TENGMLSLLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGI 662
K T+N ++ L P+++ H S + VGD+++ +LK L++K
Sbjct: 738 VKEIPNATATQATKIQQNTKNKLI-LKPLNSMTKVHASGALSVGDVRLVELKRNLTAKNH 796
Query: 663 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 711
EF G G L VT+RK+ + VI+GP E + ++
Sbjct: 797 VAEFKGEGTLVVDNKVTVRKISDG----------ETVIDGPPSELFQLVK 836
>gi|119195099|ref|XP_001248153.1| hypothetical protein CIMG_01924 [Coccidioides immitis RS]
Length = 1015
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 117/430 (27%), Positives = 177/430 (41%), Gaps = 121/430 (28%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM----------- 75
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y +
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCLYATYPVISFGR 86
Query: 76 ---KQLGLSAPVFST--------------------EPVYRLGLLTMYDQYLSRRS----- 107
+ L SAP+ ST +P G LT D S +
Sbjct: 87 SLLQDLYSSAPLASTFLPTTSSISDSNGSGSVPTQDPTAPAGALTEGDTLNSTTAGKILL 146
Query: 108 -------VTR-------LTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDG 148
+ R L YSQ + G+ + + AGH +GGT+W I
Sbjct: 147 PSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGM 206
Query: 149 EDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQP--PRQ 194
E ++YAVD+N+ +E + G V+E +P L+ A P R+
Sbjct: 207 ESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKGGDKFAPGGGRK 266
Query: 195 QR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW--------AEHSL-NYPIY 244
+R ++ D I + G VLLP D++ RVLEL +LE W E+SL N +Y
Sbjct: 267 KRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADGPDGENSLKNANLY 326
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFE-----------------------------TS 275
T+ +S LEWM +SI + FE +
Sbjct: 327 LAGKKVHGTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQQSKGTPGQTSD 386
Query: 276 RDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWAS 325
+ +A F +H+ ++ K++L+N +GPK+++AS SL+ GFS +I A
Sbjct: 387 KKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDTSLDWGFSKEILRHVAQ 446
Query: 326 DVKNLVLFTE 335
+NLV+ TE
Sbjct: 447 GAENLVILTE 456
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 128/346 (36%), Gaps = 113/346 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 496
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 627 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 685
Query: 497 ----------------------SASLILD-----------------AKPSKVVSNELTVQ 517
S SL L+ + P+K V
Sbjct: 686 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 745
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 572
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 746 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 805
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF---KKLG-----------D 610
++TPQ+ +T+D + D A+ V+LS L+ + + + LG D
Sbjct: 806 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 865
Query: 611 YEIAWVDAEVGKTENGMLS-----------------------LLPISTPAPPH------- 640
D E + ML + P+ PP+
Sbjct: 866 TATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANEALIKKEVFPLLDVLPPNLAAATRS 925
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 926 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 971
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 181/386 (46%), Gaps = 42/386 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSH 62
+++TPL S L+ G L+D G + ++ P ++ID +L++H
Sbjct: 7 LKITPLGSGNEVGRSSILMEYKGKTILLDAGIHPAYNGLASLPFFDEMDPASIDVLLVTH 66
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSVTRL 111
H ++PY M + VF T P R+ + DQ + +
Sbjct: 67 FHVDHAASVPYLMGK----GRVFMTHPTKAIFKWLLSDYLRVSHIGEEDQLYTEEDLLNS 122
Query: 112 TY---SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL--- 165
+ + +YH + EGI + AGH+LG ++ I G V+Y DY+R +++HL
Sbjct: 123 FHRIEAIDYHQQVEVEGIKFTAYNAGHVLGAAMFLIEIAGVKVLYTGDYSREEDRHLMAA 182
Query: 166 ---NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
G+V VLIT++ + + PR +E F + + GG L+PV + G
Sbjct: 183 EKPEGSV-------DVLITESTYGVQSHEPRIAKETRFTSLVHNIVTRGGRCLMPVFALG 235
Query: 222 RVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
R ELLLIL+++W H + PIY+ + ++ + ++++ M I K F S N
Sbjct: 236 RAQELLLILDEFWEAHPELDSIPIYYASSLAKRCMAVYQTYINMMNARIRKQFAIS--NP 293
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F+ KH++ L N + +++ GP +++AS L+ G S ++F WA D KN ++ T
Sbjct: 294 FVFKHISNLKNVEQFEDS--GPCVMMASPGMLQNGLSRELFERWAPDKKNGLVITGYCVE 351
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPL 365
TLAR QA P + R+VPL
Sbjct: 352 NTLAR--QAMNEPSDFQAMDGRKVPL 375
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 36/326 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 75 STVDAILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYGLTMMDAVRISDQNA 134
Query: 97 -------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
T D S ++ + Y Q+ +SG G+ P+ AGH+LG +++ I G
Sbjct: 135 DNAGRLYTEADVQSSWQNTIAVDYHQDIVVSG---GLRFTPYHAGHVLGASMFMIEIAGL 191
Query: 150 DVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKT 206
++Y DY+R +++HL V+ V+P V+I ++ +H P R+++E F +S
Sbjct: 192 KILYTGDYSREEDRHL---VIAEVPPVKPDVMICESTFGVHTLPDRKEKEEQFTTLVSNI 248
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
++ GG L+P+ S G EL L+L++YW +H N PI+F + + + K+++ M
Sbjct: 249 VKRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPIFFASGLFQRGMRVYKTYVHTM 308
Query: 265 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 324
+I F RDN F K+V L + DN P +V+AS + G S ++ +WA
Sbjct: 309 NANIRSRF-ARRDNPFDFKYVKPLKDGRRGDNF-KSPCVVMASAQFMSFGLSRELLEDWA 366
Query: 325 SDVKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L +P
Sbjct: 367 PGEKNGVIVTGYSIEGTMARTLLGEP 392
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTEADHMNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 221 ESTYGIASHVPRVEREQALVKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHPDY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D + + ++
Sbjct: 281 QKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDFNYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDL--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>gi|448124505|ref|XP_004204939.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358249572|emb|CCE72638.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 165/689 (23%), Positives = 267/689 (38%), Gaps = 175/689 (25%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------LPY 73
L+S D L D WN +P + L K ID +LLSH + PY
Sbjct: 20 LLSFDNEIKILADPSWNGK-NPDSVLYLEKYLKEIDLILLSHATAEFISGYVLLCVKFPY 78
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTY 113
M + V+ST PV +LG ++ + Y S V L Y
Sbjct: 79 LMSNIA----VYSTLPVNQLGRISTIEYYRSSGILGPLKDSILEADEVDEWFDKVKPLKY 134
Query: 114 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES- 172
Q +L +V+ P+ AGH LGGT W +T+ E VIYA +N K+ LN S
Sbjct: 135 MQTLNLFD--SKLVITPYNAGHTLGGTFWLLTRQLEKVIYAPAWNHSKDSFLNNATFLSS 192
Query: 173 --------FVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
+RP LIT+ + +++ E F + TL GG VLLP AGR L
Sbjct: 193 STGNPSSQLLRPTALITNT-DLGSTMSHKKRTEKFLQLVDATLANGGTVLLPTSLAGRFL 251
Query: 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----- 279
ELL +++ + S P+YFL+Y + ++Y + LEWM + K +E + +
Sbjct: 252 ELLHLVDQHL--QSAPIPVYFLSYSGTRVLNYASNLLEWMSGQLIKEWEEASSSTNNSSN 309
Query: 280 -----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 333
F V LL + +EL GPK+V S + G S ++ D K ++
Sbjct: 310 KNNFPFDPSKVDLLSDPNELIQL-SGPKIVFCSGLDFKDGDVSFEVLSYLCQDEKTTIIL 368
Query: 334 TERGQFGT----------------------LARMLQADPPPKAVKVT-MSRRVPLVGEEL 370
TE+ FG+ L A P K + + ++ PL+G EL
Sbjct: 369 TEKTHFGSDDTINSQLYREWYELTKQRNGGLVEDGTAVPLEKIINLQHWTKEEPLIGTEL 428
Query: 371 IAYEEEQTRLKKEEALKASLVKEEESKASLGPD--------------------------N 404
++E ++ +K+ L V++ +++ L D
Sbjct: 429 SDFQERISQQRKQRLLAK--VRDRKNQNLLNADTLSDDDSSDEEENTTDEESEALKMTST 486
Query: 405 NLSGDPMVIDANNANASADVVEPH-------------GGRYRDILIDGFVPPSTSVAPMF 451
+ + +V + A D + H R D+ I + P + MF
Sbjct: 487 TIKSNSVVGNNTTAPVRVDDLSSHEAFISSHIKQTLQDNRPLDLKITYKLKPRHA---MF 543
Query: 452 PFY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM---------------HIGGDDG--- 491
PF + + DD+GE+IN +D+ D+ ++ M + D G
Sbjct: 544 PFMVVSHKPKVDDYGEMINIEDFQKNDDFGNKLIMESKKKFEQNERRKWGNTEHDKGRGK 603
Query: 492 -KLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 522
K D+ ++S P +V++N+L ++++C L
Sbjct: 604 FKNDKNNSSSQNKLTPQEVLNNQLLQKNLDTLFNPKKRVPINVASSFASDPQELRIRCGL 663
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLV 551
F+D G D RS+ I++ + P L+L+
Sbjct: 664 SFVDLSGLVDLRSLSLIVTSLKPYNLILL 692
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 144/295 (48%), Gaps = 23/295 (7%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTM 98
+D V++SH H GALPY + +G P++ T P V R G
Sbjct: 130 LDCVIISHFHLDHCGALPYMTEIVGYDGPIYMTHPTKAICPILLDDYRKITVERRGEQNF 189
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+ + R ++++ + + + + AGH+LG ++ I + V+Y DYN
Sbjct: 190 FTSEMIYRCMSKVKCVYVHQTVKVDDELELQAFYAGHVLGAAMFLIRVGSQSVLYTGDYN 249
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
++HL G S P +LIT++ A + ++ RE F + I + AGG VL+PV
Sbjct: 250 MTPDRHL-GAAWVSRCCPDILITESTYATTIRDSKRAREREFLEKIHARVEAGGKVLIPV 308
Query: 218 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
+ GR EL ++LE YW +++ PIYF ++ +Y K F+ W I ++F +
Sbjct: 309 FALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETF--VKR 366
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
N F KH+ L + +DN GP +V A+ L AG S IF +WA D +N+V+
Sbjct: 367 NMFEFKHIKPL-GQGIVDNP--GPMVVFATPGMLHAGQSLHIFRKWAPDERNMVV 418
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 47/339 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV---------------------- 90
ST+D +L+SH H ALPY + + VF T P
Sbjct: 75 STVDILLISHFHLDHAAALPYVLAKTDFKGRVFMTHPTKAIYKWLIQDSVRVSNTSSTSD 134
Query: 91 YRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T D + + + + + +SG + + P+ AGH+LG ++ I G +
Sbjct: 135 QRTSLYTEADHISTLPQIETIDFYTTHTVSG----VRITPYPAGHVLGAAMFLINIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVL---ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
+ + DY+R +++HL + + + +LIT++ + N PPR +RE A++
Sbjct: 191 IWFTADYSREQDRHLVAAEVPNKSTVGKIDLLITESTFGISNAPPRAEREAGLLKAVTNI 250
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
L GG VL+PV + GR ELLLILEDYW++H YPIY+ + + ++++ M
Sbjct: 251 LNRGGKVLMPVFALGRAQELLLILEDYWSKHPELQKYPIYYTGNTARKCMVVYQTYINAM 310
Query: 265 GDSITKSFETSRDNA-------------FLLKHVTLLINKSELDNAPDGPKLVLASMASL 311
D+I + F A + + V L N D+ G ++LAS L
Sbjct: 311 NDNIKRIFRERMAEAEAAGNAKGVSAGPWDFRFVRSLRNLDRFDDV--GGCVMLASPGML 368
Query: 312 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
++G S + WA D +N V+ T GT+AR + ++P
Sbjct: 369 QSGMSRVLLERWAPDPRNGVIMTGYNVEGTMARTILSEP 407
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 164/339 (48%), Gaps = 38/339 (11%)
Query: 59 LLSHPDTLHL---GALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRL 111
LL+ D+ H+ +LPY + + VF T P + + D + S T+L
Sbjct: 115 LLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTASNSATQL 174
Query: 112 TYSQN------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
Q+ YH + I + P+ AGH+LG ++ I G ++ + DY+R
Sbjct: 175 YTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSR 234
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
+++HL + ++ VLIT++ + + PR +RE +I+ L GG LLPV
Sbjct: 235 EQDRHLVSAEVPKGIKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVF 294
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF---- 272
+ GR ELLLIL++YWA+H +PIY+ + ++ + ++++ M D+I + F
Sbjct: 295 ALGRAQELLLILDEYWAKHPEYQKFPIYYASNLARKCMVIYQTYVGAMNDNIKRLFRERM 354
Query: 273 ---ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 324
E S D+A + K++ L N D+ G ++LAS L+ G S ++F WA
Sbjct: 355 AEAEASGDSAGKNGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELFERWA 412
Query: 325 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
KN V+ T GT+AR + + P ++ MSR +
Sbjct: 413 PSEKNGVIITGYSVEGTMARQIMQE--PDQIQAVMSRSI 449
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 167/357 (46%), Gaps = 32/357 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHF-DPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+VS+ G + DCG + + D S+++ T ID V+++H H+GALPY
Sbjct: 12 IVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLDHVGALPYF 71
Query: 75 MKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVA--- 129
+ G PV+ T P L +L Y + + R +S H+ + ++
Sbjct: 72 TEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFS-TLHIQQCMKKVIAVDLR 130
Query: 130 ------------PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 177
+ AGH+LG ++ + V+Y DYN ++HL ++ ++P
Sbjct: 131 QTIRVSRDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGAAQIDR-LKPD 189
Query: 178 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 236
+LIT++ A + R +E F + + + GG VL+P+ + GR EL ++L++YW
Sbjct: 190 LLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELCILLDEYWER 249
Query: 237 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296
+L PIYF ++ + Y K + W I ++ T NAF KHV ++++LD
Sbjct: 250 MNLKVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTR--NAFDFKHV-FPFDRTQLDG 306
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
GP ++ A+ L G S ++ WA +NL++ GT+A+ L + P +
Sbjct: 307 P--GPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSGKPTR 361
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 498 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
A + KP++V V T+ V+C + + + D + I ++ V P ++LVHG
Sbjct: 351 AQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPHNVILVHGEKL 410
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 600
+ LK + + P + ++V S C + V+ S++L+
Sbjct: 411 KMDVLKARINNELGIPCHNPANHDVVEVPSH-CLFNVEASKELV 453
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 43/366 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D +S S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 TRL----------TY----SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
T++ TY S +++ + G+ + P+ AGH+LG ++ + G +++
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVAGVRITPYPAGHVLGAAMFLMEIAGLKILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R ++HL + + V+ VLIT++ + PR +RE AI+ L GG
Sbjct: 194 GDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRA 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+I +
Sbjct: 254 LLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRL 313
Query: 272 F-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
F +T R A+ K V L + D+ G ++LAS +++G S ++
Sbjct: 314 FAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTSRELL 371
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAYEEEQ 377
WA D +N V+ T GT+A+ + +P P + + + R P G+ E EQ
Sbjct: 372 ERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR----ENEQ 425
Query: 378 TRLKKE 383
T + +
Sbjct: 426 TMIPRR 431
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+DA+L++H H AL Y M++ V+ T P + M D S T
Sbjct: 57 STVDAILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMSTSST 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLEMTMSLSSIIPVSAHQLISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + VRP VLI ++ + + R ++E+ F + +R GG+VL
Sbjct: 177 DYSREEDRHLVSAEVPP-VRPDVLIVESTYGVQSLEARDEKEVRFTSLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N IY+ + ++ + ++++ M +I F
Sbjct: 236 LPTFALGRAQELLLILDEYWKKHPDLHNVTIYYASSLARKCMAVYQTYIHTMNANIRSRF 295
Query: 273 ETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ L + DGP +VLAS L++G S ++ WA D +N
Sbjct: 296 -AKRDNPFVFKHISNLAQPRGWERKIADGPPCVVLASPGFLQSGPSRELLELWAPDPRNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GTLAR + +P
Sbjct: 355 LIVTGYSVEGTLARDIMNEP 374
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 173/364 (47%), Gaps = 36/364 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + ++ P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLT-YSQNYHL-------------S 120
VF T P + + D +S S T++ Y++ HL +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTEQDHLNTYPMIESIDFYTT 159
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
G+ + P+ AGH+LG ++ + G +++ DY+R ++HL + + V+ VLI
Sbjct: 160 HTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKVDVLI 219
Query: 181 TDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 238
T++ + PR +RE AI+ L GG LLPV + GR ELLLIL++YW++H
Sbjct: 220 TESTFGISMHTPRVEREAQLMKAITDILNRGGRALLPVFALGRAQELLLILDEYWSKHPE 279
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-----------ETSRDNAFLLKHVT 286
PIY+ + ++ + ++++ M D+I + F +T R A+ K V
Sbjct: 280 VQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVR 339
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + D+ G ++LAS +++G S ++ WA D +N V+ T GT+A+ +
Sbjct: 340 SLKSLERFDDL--GGCVMLASPGMMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQI 397
Query: 347 QADP 350
+P
Sbjct: 398 VHEP 401
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 167/364 (45%), Gaps = 36/364 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYRGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHLSGKGE---------- 124
VF T P + M D S ++ Y++ HL+ +
Sbjct: 101 NFKGRVFMTHPTKAIYKWLMQDSVRVGNTSSNPTSQPVYTEQDHLNTFPQIEAIDYYTTH 160
Query: 125 ---GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G +V + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNVFFTGDYSREQDRHLVSAEVPRGVQIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW HS
Sbjct: 221 ESTYGIASHVPRMEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWDRHSEY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------------FLLKHVT 286
PIY+ + ++ + ++++ M D+I + F A + K +
Sbjct: 281 QKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERLAEAEAAGNVGTGGGPWDFKFIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ GP ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDL--GPCVMLASPGMLQTGVSRELLERWAPSDKNGVVITGYSVEGTMAKQI 398
Query: 347 QADP 350
+P
Sbjct: 399 MQEP 402
>gi|448122146|ref|XP_004204382.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358349921|emb|CCE73200.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 168/689 (24%), Positives = 278/689 (40%), Gaps = 175/689 (25%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------LPY 73
L+S D L D WN +P + L K D +LLSH + PY
Sbjct: 20 LLSFDNEIKILADPSWNGK-NPDSILYLEKYLKETDLILLSHATAEFISGYVLLCVKFPY 78
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTY 113
M + V+ST PV +LG ++ + Y S V L Y
Sbjct: 79 LMSNIA----VYSTLPVNQLGRISTIEYYRSSGILGPLKDSILEADEVDEWFDKVKPLKY 134
Query: 114 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL-NGTVLES 172
Q +L +V+ P+ AGH LGGT W +T+ E VIYA +N K+ L N T L S
Sbjct: 135 MQTLNLFD--SKMVITPYNAGHTLGGTFWLLTRQLEKVIYAPAWNHSKDSFLNNATFLSS 192
Query: 173 --------FVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
+RP LIT+ + +++ E F + TL GG VLLP AGR L
Sbjct: 193 STGNPSSQLLRPTALITNT-DLGSTMSHKKRTEKFLSLVDATLANGGTVLLPTSLAGRFL 251
Query: 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----- 279
ELL +++ + S P+YFL+Y + ++Y + LEWM + K +E + +
Sbjct: 252 ELLHLVDQHL--QSAPIPVYFLSYSGTRVLNYASNLLEWMSGQLIKEWEEASSSTNNSSN 309
Query: 280 -----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 333
F V LL + +EL GPK+V S + G S ++ D K ++
Sbjct: 310 KNNFPFDPSKVDLLSDPNELIQLS-GPKIVFCSGLDFKDGDVSFEVLSYLCQDEKTTIIL 368
Query: 334 TERGQFGT--------------LARMLQ--------ADPPPKAVKV-TMSRRVPLVGEEL 370
TE+ FG+ LA+ A P K + + ++ PL+G +L
Sbjct: 369 TEKTHFGSDDTINSQLYREWYDLAKQRNGGLVEDGAAVPLEKIINLQNWTKEEPLIGSDL 428
Query: 371 IAYEEEQTRLKKEEALKASLVKEEESKASLGPD--------------------------- 403
++E ++ +K+ L V++ +++ L D
Sbjct: 429 SDFQERISQQRKQRLLAK--VRDRKNQNLLNADTLSDDDSSDEEENTTDEESEALKMTST 486
Query: 404 ----NNLSGD----PMVID---ANNANASADVVEP-HGGRYRDILIDGFVPPSTSVAPMF 451
N+++G+ P+ +D ++ A S+ + + R D+ I + P + MF
Sbjct: 487 TIKSNSVTGNNTTAPVRVDDLSSHEAFISSHIKQTLQDNRPLDLKITYKLKPRHA---MF 543
Query: 452 PFY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM---------------HIGGDDG--- 491
PF + + DD+GE+IN +D+ D+ ++ M + D G
Sbjct: 544 PFMVVSHKPKVDDYGEMINIEDFQKNDDFGNKLIMESKKKFEQNERRKWGNTEHDKGRGK 603
Query: 492 -KLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 522
K D+ ++S P +V++N+L ++++C L
Sbjct: 604 FKNDKNNSSSQNKLTPQEVLNNQLLQKNLDTLFNPKKRVPMNVASSFASDPQELRIRCGL 663
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLV 551
F+D G D RS+ I++ + P L+L+
Sbjct: 664 SFVDLSGLVDLRSLSLIVTSLKPYNLILL 692
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 183/384 (47%), Gaps = 36/384 (9%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDAV ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRLTYSQ---- 115
H H ALP+ ++ V+ T P + LL Y + ++ S T Y++
Sbjct: 66 HFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDF-YTETDLV 124
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+YH +GI V AGH+LG ++ + + ++Y D++R +++HL
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 184
Query: 167 GTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
ES + LIT++ + PR +RE F + ++ GG LLPV + GR
Sbjct: 185 AA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQ 242
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLILE++W ++ PIY+ + ++ + ++++ M + I K + N F
Sbjct: 243 ELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKL--SLVRNPFAF 300
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K+V L D+ +GP +++AS L++G S D+F W SD KN V+ GTL
Sbjct: 301 KYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTL 358
Query: 343 ARMLQADPPP------KAVKVTMS 360
A+ + ++P K +++ MS
Sbjct: 359 AKEILSEPKEIEAMNGKKLRLNMS 382
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 179/378 (47%), Gaps = 48/378 (12%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWN------------DHFDPSLLQPLSKV 51
+++TPL G NE S L+ G ++DCG + D+ DP
Sbjct: 57 LKITPL-GAGNEVGRSCILLEFKGKTIMLDCGLHPAHSGLAALPFFDNIDPE-------- 107
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYR--------LGLLTMYD 100
++D VL++H H LPY M++ VF T P +Y+ + L+ D
Sbjct: 108 --SVDLVLITHFHVDHAAGLPYFMEKTAFKGRVFMTHPTRAIYKWLVSDYIKISSLSPDD 165
Query: 101 QYLSRRSVTRLTYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
Q S + + +Y + +YH GI P+ AGH+LG ++ + G ++Y D
Sbjct: 166 QLYSDKDLAN-SYGRIEVIDYHQEVDLGGIKFTPYYAGHVLGAAMFLLEIAGVRLLYTGD 224
Query: 157 YNRRKEKHLNGTVLE-SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
Y+R +++HL S + P VLI ++ + PR RE F + ++ GG L
Sbjct: 225 YSREEDRHLMAAERPPSSIIPEVLICESTFGVQTLEPRLDREQRFTRMVHTIVKRGGRCL 284
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LPV + GR ELLLIL++YW H+ + PIY+ + ++ + +++ M I +
Sbjct: 285 LPVFALGRAQELLLILDEYWHAHADLHSVPIYYASAIAKKCMAVYQTYTNMMNGRIREMA 344
Query: 273 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
+ S N F KH++ L + ++ D+ GP +++AS L++G S ++ W D +N V+
Sbjct: 345 KIS--NPFQFKHISNLKSIAQFDDV--GPCVMMASPGMLQSGLSRELLELWCVDKRNGVI 400
Query: 333 FTERGQFGTLARMLQADP 350
GTL + + + P
Sbjct: 401 IPGYVVEGTLGKQILSQP 418
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 155/320 (48%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+DA+L++H H AL Y ++ V+ T P + M D S +
Sbjct: 57 STVDAILVTHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDFARMSSSTS 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLDMQMSLASIIPVSAHQLINVCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL L +RP VLI ++ +H R+++E F + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAELPP-IRPDVLIVESTYGVHTLEGREEKEARFTTLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M +I F
Sbjct: 236 LPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANIRTRF 295
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ K+++ L E A P +VLAS ++ G S ++F WA D +N
Sbjct: 296 -AKRDNPFVFKYISNLPQTRGWEKKIAEGPPCVVLASPGFMQVGPSRELFELWAPDARNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GTLAR + +P
Sbjct: 355 LIITGYSIEGTLARDIMTEP 374
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 28/316 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W ++ PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNMKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDN 296
KH+ ++S DN
Sbjct: 301 EFKHIKAF-DRSYADN 315
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 156/330 (47%), Gaps = 34/330 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRR--- 106
S++DA+L++H H AL Y ++ V+ T P L M D +RR
Sbjct: 57 SSVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRANF 116
Query: 107 ---------------------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
S+ + + L G+ P+ AGH+LG ++ I
Sbjct: 117 VKCPHSSASSDALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLID 176
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAIS 204
G ++Y DY+R +++HL L +RP VL+ ++ +H R+++E F +
Sbjct: 177 IAGLKILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTSLVH 235
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+R GG+VLLP + GR ELLLIL+DYW +H N P+Y+ + ++ + ++++
Sbjct: 236 SIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTYIH 295
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIF 320
M +I F RDN F+ KH++ + + DGP +VLAS ++ G S ++F
Sbjct: 296 TMNANIRSRF-ARRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSRELF 354
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
W D +N ++ T GT AR + +P
Sbjct: 355 EHWCPDARNGLIITGYSIEGTPARDIMTEP 384
>gi|425768274|gb|EKV06801.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum Pd1]
gi|425770355|gb|EKV08828.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum PHI26]
Length = 1001
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 170/414 (41%), Gaps = 105/414 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D F+ L L K T+ +LL+H H+GAL + + L P+
Sbjct: 27 GIKILVDVGWDDTFNTLDLAELEKHIPTLSLILLTHATPAHIGALVHCCRTFPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQY---------LSRRSVTR------------------------- 110
++T PV G + D Y L + SV+
Sbjct: 87 YATNPVIAFGRTLLQDLYASAPLAATFLPKASVSEPGASSAGSATVSGADAEAAGNTSRI 146
Query: 111 -------------------LTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITK 146
L YSQ + S G+ + + AGH +GGT+W I
Sbjct: 147 LLQSPTAEEISRYFSLIQPLKYSQPHQPLSSPFSPPLNGLTLTAYNAGHTVGGTIWHIQH 206
Query: 147 DGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPP 192
E ++YA+D+N+ +E + G V+E +P LI T + L
Sbjct: 207 GLESIVYAMDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTTGGDKLAPSGG 266
Query: 193 RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPI 243
R++R ++ D I +L GG VL+P D++ RVLEL LE W + + +
Sbjct: 267 RKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYSLEHSWRDAANGDKEDVLQGAGL 326
Query: 244 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--------------------AFLLK 283
Y ++TI +S LEWM ++I + FE + + F K
Sbjct: 327 YLAGKKVTNTIRLARSMLEWMDENIVREFEAAESSDVTNGQRTGAQEKSSNKGGGPFTFK 386
Query: 284 HVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
H+ ++ K L+ A GPK++LAS S++ GFS D + A NL+L TE
Sbjct: 387 HLKIIERKKRLEKLLAEPGPKVILASDTSMDWGFSKDALRQVAEGPNNLLLLTE 440
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 132/350 (37%), Gaps = 116/350 (33%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ----AAMHIG---------GDDG- 491
MFP+ + D++GE I P++Y+ +E DM Q A +G G +G
Sbjct: 610 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRTDAETKLGQKRRWDDTAGPNGR 669
Query: 492 KLDEGSA-----------------SLILDAK-------------------PSKVVSNELT 515
KL G+A SL D + P+KVV + T
Sbjct: 670 KLSGGAAGRKRPQIDGKKIEDDDLSLASDGEEADVAAESEDETEGQSFEGPAKVVYHTQT 729
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV-- 573
+ + + FID+ G D RS++ ++ + P KL+LV G E T L C K + V
Sbjct: 730 ITINARIAFIDFMGLHDKRSLEMLIPLIQPQKLILVGGMKEETSALAAECQKLLTVKVGA 789
Query: 574 -------------YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK-------------- 606
+TP E ID + D A+ V+LS L+ + ++
Sbjct: 790 TVSDPAFDSAAIIFTPANGEVIDASVDTNAWMVKLSSTLVRRLNWQHVRSLGVVALTAQL 849
Query: 607 ------KLGDYEIAWVDAEVGKTENG-----------------------MLSLLPISTPA 637
+GD E + + K E +L LP S A
Sbjct: 850 RRPEPADIGDIETSGKKVKQLKDEAASSAVAPSLEQAGTKIIDKVDVYPLLDTLPASMAA 909
Query: 638 PPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
+ + VGDL++ADL+ + S G EF G G L + V +RK G
Sbjct: 910 GTRSMARPLHVGDLRLADLRKLMQSAGHTAEFRGEGTLLIDKSVAVRKSG 959
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 163/331 (49%), Gaps = 33/331 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+DA+L++H H +L Y ++ ++ T P L M D + S +
Sbjct: 57 STVDAILITHFHLDHAASLTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRTGSSSS 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLDISMSLASIIPVSAHQLITPCPGVSFTPYHAGHVLGACMFLIDMAGLRILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL L +RP VLI ++ + + PR ++E+ F + + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAELPP-IRPDVLIVESTYGVQSHEPRDEKELRFTNLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ ++ ++++ M +I F
Sbjct: 236 LPQFALGRAQELLLILDEYWKKHPDLHNVPIYYASGLARKSMAVYQTYIHTMNSNIRSRF 295
Query: 273 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
RDN F+ K ++ P P +VLA+ ++ G S ++F WA D +N ++
Sbjct: 296 -AKRDNPFVF--------KCKIAEGP--PCVVLATPGFMQTGSSRELFELWAPDSRNGLI 344
Query: 333 FTERGQFGTLARMLQADPPP-KAVKVTMSRR 362
T GTLAR + +P ++VK M +R
Sbjct: 345 VTGYSVEGTLARDIMTEPEEFQSVKGHMIQR 375
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 157/320 (49%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYD-QYLSRRSV 108
ST+D +L++H H AL Y M++ V+ T P L M D +S S
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSTSSA 116
Query: 109 ----TRLTYSQN---------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
T L S + + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DTLFTPLEMSMSLASIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + + P VLI ++ + + PR +E F + + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAEIPP-IHPDVLIVESTYGVQSHEPRDDKEARFTNLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YWA+H N PIY+ + ++ + ++++ M ++ F
Sbjct: 236 LPTFALGRAQELLLILDEYWAKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSNVRTRF 295
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH+T + E A P +VLAS + +G S ++ WASD KN
Sbjct: 296 -AKRDNPFVFKHITNVPGTRGWERKIAEGPPCVVLASPGFMNSGPSRELLELWASDSKNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
+ T GT+AR + +P
Sbjct: 355 CIVTGYSVEGTMARDILNEP 374
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 172/362 (47%), Gaps = 40/362 (11%)
Query: 38 DHFDPSLLQPL--SKVASTIDAVLLSHPDTLHL---GALPYAMKQLGLSAPVFSTEPVYR 92
D FD S + L S+ ++LL+ D+ H+ +LPY + + VF T P
Sbjct: 70 DDFDLSTVDVLLISQTLHDASSLLLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKA 129
Query: 93 LGLLTMYDQY----LSRRSVTRLTYSQN------------YHLSGKGEGIVVAPHVAGHL 136
+ + D + S T+L Q+ YH + I + P+ AGH+
Sbjct: 130 IYKWLIQDSVRVGNTASNSATQLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHV 189
Query: 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR 196
LG ++ I G ++ + DY+R +++HL + ++ VLIT++ + + PR +R
Sbjct: 190 LGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRLER 249
Query: 197 EM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSST 253
E +I+ L GG LLPV + GR ELLLIL++YW +H +PIY+ + ++
Sbjct: 250 EQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEFQRFPIYYASNLARKC 309
Query: 254 IDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGP 301
+ ++++ M D+I + F E S D A + K++ L N D+ G
Sbjct: 310 MVIYQTYVGAMNDNIKRLFRERMAEAEASGDAAGKNGPWDFKYIRSLKNLDRFDDV--GG 367
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
++LAS L+ G S ++F WA KN V+ T GT+AR + + P ++ MSR
Sbjct: 368 CVMLASPGMLQNGVSRELFERWAPSEKNGVIITGYSVEGTMARQIMQE--PDQIQAVMSR 425
Query: 362 RV 363
+
Sbjct: 426 SI 427
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 38/378 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L++H H+ +LPY + +
Sbjct: 42 HIIQYKGKTVMLDAGIHPAYDGLAALPFYDEFDLSTVDVLLITHFHMDHVASLPYVLAKT 101
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN---------------------- 116
+ V+ T P + M D + + T T +
Sbjct: 102 PFAGRVYMTHPTKAIYKHLMTDSVRVQNTHTSATSGTDGYVAQLFNEQDILTTMPQIQTI 161
Query: 117 -YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
++ + GI P+ AGH+LG ++ I G ++++ DY+R +HL + V
Sbjct: 162 SFNTTHIHNGIKFTPYPAGHVLGACMYLIEIAGLNILFTGDYSREDNRHLMPASIPRHVN 221
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
LIT++ + PR +RE +I+ L GG LLP + G ELLLILEDYW
Sbjct: 222 VDCLITESTFGISTHVPRAERETALMRSITGILNRGGRALLPTFALGGAQELLLILEDYW 281
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN------AFLLKHVT 286
A H +PIYF + ++ + +++++ M ++I F+ ++ N + +H+
Sbjct: 282 ARHPEYQRFPIYFASSLARKCMVVYQTYIDAMNENIRTKFQAAQANPDGVGGPWDFQHIR 341
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + D+ G ++LAS L+ G S + WA D KN V+ T GT+A+ +
Sbjct: 342 SLKSLERFDDV--GGCVMLASPGMLQNGVSRSLLERWAPDAKNGVIITGYSVEGTMAKSI 399
Query: 347 QADPPPKAVKVTMSRRVP 364
+ P ++ M+ R P
Sbjct: 400 MLE--PDSIPAVMTNRQP 415
>gi|164658265|ref|XP_001730258.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
gi|159104153|gb|EDP43044.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
Length = 741
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 134/250 (53%), Gaps = 10/250 (4%)
Query: 104 SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
S R + + Y Q L G G+ P+ AGH+LG ++ I G V+Y DY+R +++
Sbjct: 51 SWRQIEAVDYHQEVVLGG---GLRFTPYHAGHVLGACMFMIDMAGLRVLYTGDYSREEDR 107
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 222
HL + +RP VLI ++ + PR +EM F I +R GG VLLPV GR
Sbjct: 108 HLVQAEVPP-MRPDVLICESTYGTQSLEPRLDKEMRFTSLIHSIIRRGGRVLLPVFVLGR 166
Query: 223 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
ELLL+L++YW H + PIY+ + ++ + ++++ M I F RDN F
Sbjct: 167 AQELLLLLDEYWEAHPELHSVPIYYASSLARKCMSIYQTYIHTMNQHIRARFH-RRDNPF 225
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
+ KHV+ L + + D+ GP +++AS +++G S ++ WA D +N V+ + G
Sbjct: 226 VFKHVSNLRSLDKFDD--KGPCVMMASPGFMQSGISRELLERWAPDKRNGVIVSGYSVEG 283
Query: 341 TLARMLQADP 350
T+AR + +DP
Sbjct: 284 TMARDILSDP 293
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 179/383 (46%), Gaps = 38/383 (9%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLS 61
S+ TPL + ++ G L+DCG + P +D +L++
Sbjct: 21 SLTFTPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVT 80
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR-----SVTRLTY 113
H H GA+P+ +++ F +T+ +YR+ + YL S RL Y
Sbjct: 81 HFHLDHCGAVPWLLEKTAFRGRCFMTHATKAIYRM----LIGDYLKVSKYGGGSDNRLLY 136
Query: 114 SQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
++ ++H + GI +VAGH+LG ++ I G V+Y D++R
Sbjct: 137 TEEDLEKSMEKIEVIDFHEQKEVNGIKFWCYVAGHVLGACMFMIEIAGVRVLYTGDFSRL 196
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 219
+++HL L + V P VLI ++ R++RE F + + + GG L+P +
Sbjct: 197 EDRHLCAAELPT-VSPDVLICESTYGTQVHEGREEREKRFTSTVHEIVGRGGRCLIPAFA 255
Query: 220 AGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GR ELLLIL++YW H + P+Y+ + ++ + ++F+ M I K + + +
Sbjct: 256 LGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK--QIALN 313
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F+ +HV+ L + ++ GP +VLAS L+ G S ++F W +D KN +
Sbjct: 314 NPFVFRHVSNLKSIEHFEDV--GPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYC 371
Query: 338 QFGTLARMLQADPPPKAVKVTMS 360
GTLA+ + ++P VTMS
Sbjct: 372 VEGTLAKHILSEPEE---IVTMS 391
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 177/368 (48%), Gaps = 30/368 (8%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDAV ++
Sbjct: 94 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFIT 152
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRLTYSQ---- 115
H H ALP+ ++ V+ T P + LL Y + ++ S T Y++
Sbjct: 153 HFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDF-YTETDLV 211
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+YH +GI V AGH+LG ++ + + ++Y D++R +++HL
Sbjct: 212 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 271
Query: 167 GTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
ES + LIT++ + PR +RE F + ++ GG LLPV + GR
Sbjct: 272 AA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQ 329
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLILE++W ++ PIY+ + ++ + ++++ M + I K + N F
Sbjct: 330 ELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKL--SLVRNPFAF 387
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K+V L D+ +GP +++AS L++G S D+F W SD KN V+ GTL
Sbjct: 388 KYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTL 445
Query: 343 ARMLQADP 350
A+ + ++P
Sbjct: 446 AKEILSEP 453
>gi|407929750|gb|EKG22561.1| RNA-metabolising metallo-beta-lactamase [Macrophomina phaseolina
MS6]
Length = 974
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 50/262 (19%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH LGGT+W I E ++YAVD+N+ +E L+G V+E
Sbjct: 175 GLTITAYSAGHTLGGTIWHIQHGLESIVYAVDWNQAREHVLSGAAWLGGSGAGGAEVIEQ 234
Query: 173 FVRPAVLITDAYNA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
RP ++ + A + RQ+R E+ + I +T+ GG+VL+P DS+ RVLEL +
Sbjct: 235 LRRPTAMVCSSRGAERIALAGGRQKRDELLLEMIKETVCNGGSVLIPSDSSARVLELAYL 294
Query: 230 LEDYW---AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR------DNA- 279
LE+ W A+ N P+Y + ++T+ Y +S LEWM + I + FE + DN
Sbjct: 295 LENAWQADAQSFGNAPLYLASRTCAATMRYARSMLEWMDEGIVREFEAASSGQGTDDNKR 354
Query: 280 -----------------------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 314
F + + L+ ++++ A +GPK++LAS SLE G
Sbjct: 355 SRTQQGSGRSKEGKEDAKKPNAPFDFRSLRLVERRTQVSRMLAAEGPKVILASDVSLEWG 414
Query: 315 FSHDIFVEWASDVKNLVLFTER 336
FS + A+D +NLV+ TER
Sbjct: 415 FSKEAVRALAADSRNLVILTER 436
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
A PSKVV ++ TV+V+C + F+D+ G D RS++ ++ + P KL+L+ G E T L
Sbjct: 703 AGPSKVVFSKETVRVECRIAFVDFSGLHDKRSLQLLIPMIRPRKLILIAGEQEETLALAA 762
Query: 564 HCLKHV----------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF---KKLGD 610
C K + V+TP I T+D + D A+ V+LS+ ++ + + K LG
Sbjct: 763 DCRKLIEAATADTSESAIDVFTPTIGLTVDASVDTNAWTVRLSQNIVRRLRWQNVKGLGV 822
Query: 611 YEI-AWVDAEVGKTENG----------------------------------MLSLLPIST 635
I ++A++ EN +L ++P S
Sbjct: 823 VAITGRLEAQLPTDENDGDGSAKKKIKATKGDGQEASSAEEKDGEEKQATPVLDVVPASM 882
Query: 636 PAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGG 691
A + + VGDL++ADL+ + S G EF G G L V +RK
Sbjct: 883 AAATRSVAQPLHVGDLRLADLRKIMQSSGFAAEFRGEGTLLINGSVVVRK---------- 932
Query: 692 SGTQQIVIE-------GPLCED--YYKIRAYLY 715
SGT +I +E GP D +Y ++ +Y
Sbjct: 933 SGTGKIEVESSGFGVMGPGRPDGTFYAVKRKIY 965
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G + + S L+ +DG LID GW++ FD L+ L + T+ VLL+H T
Sbjct: 5 TPLLGAQSTSTASQSLLELDGGIKILIDVGWDETFDAEKLKELERQIPTLSCVLLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS 104
HLGA + K L P+++T PV LG + D Y S
Sbjct: 65 AHLGAFAHCCKHFPLFTRIPIYATTPVISLGRTLLQDLYTS 105
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 175/366 (47%), Gaps = 43/366 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D +S S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 TRL----------TY----SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
T++ TY S +++ + G+ + P+ AGH+LG ++ + G +++
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R ++HL + V+ VLIT++ + PR +RE AI+ L GG
Sbjct: 194 GDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRA 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+I +
Sbjct: 254 LLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRL 313
Query: 272 F-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
F +T R A+ K V L + D+ G ++LAS +++G S ++
Sbjct: 314 FAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTSRELL 371
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAYEEEQ 377
WA D +N V+ T GT+A+ + +P P + + + R P G+ E EQ
Sbjct: 372 ERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR----ENEQ 425
Query: 378 TRLKKE 383
T + +
Sbjct: 426 TMIPRR 431
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 156/330 (47%), Gaps = 34/330 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRR--- 106
S++DA+L++H H AL Y ++ V+ T P L M D +RR
Sbjct: 57 SSVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRALS 116
Query: 107 ---------------------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
S+ + + L G+ P+ AGH+LG ++ I
Sbjct: 117 VKCPHSSASSDALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLID 176
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAIS 204
G ++Y DY+R +++HL L +RP VL+ ++ +H R+++E F +
Sbjct: 177 IAGLKILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTSLVH 235
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+R GG+VLLP + GR ELLLIL+DYW +H N P+Y+ + ++ + ++++
Sbjct: 236 SIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTYIH 295
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIF 320
M +I F RDN F+ KH++ + + DGP +VLAS ++ G S ++F
Sbjct: 296 TMNANIRSRF-ARRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSRELF 354
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
W D +N ++ T GT AR + +P
Sbjct: 355 EHWCPDARNGLIITGYSIEGTPARDIMTEP 384
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 29/367 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ +V G + ++DCG +H S L L S ID VL+
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--------------QYLSRR 106
+H H GALPY +Q +F T + M D ++L +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIGASAEDIVNNEWL--Q 154
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
S + YH GI P AGH+LG ++ + G ++Y D++R ++HL
Sbjct: 155 STIEKIETVEYHEEVTVNGIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPDRHLL 214
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLE 225
G + + P +LI ++ N + R++RE F + ++ GG L+PV + GR E
Sbjct: 215 GAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALGRAQE 273
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LLLILE+YW H + PIY+ + ++ + ++F+ M D + K E R N F+ K
Sbjct: 274 LLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHR-NPFVFK 332
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
++ L++ ++ GP +VLAS L++G S ++F W D +N ++ GT+A
Sbjct: 333 YIQSLLDTRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIA 390
Query: 344 RMLQADP 350
+ + + P
Sbjct: 391 KDILSKP 397
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 29/367 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ +V G + ++DCG +H S L L S ID VL+
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--------------QYLSRR 106
+H H GALPY +Q +F T + M D ++L +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIGASAEDIVNNEWL--Q 154
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
S + YH GI P AGH+LG ++ + G ++Y D++R ++HL
Sbjct: 155 STIEKIETVEYHEEVTVNGIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPDRHLL 214
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLE 225
G + + P +LI ++ N + R++RE F + ++ GG L+PV + GR E
Sbjct: 215 GAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALGRAQE 273
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LLLILE+YW H + PIY+ + ++ + ++F+ M D + K E R N F+ K
Sbjct: 274 LLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHR-NPFVFK 332
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
++ L++ ++ GP +VLAS L++G S ++F W D +N ++ GT+A
Sbjct: 333 YIQSLLDTRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIA 390
Query: 344 RMLQADP 350
+ + + P
Sbjct: 391 KDILSKP 397
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 159/329 (48%), Gaps = 35/329 (10%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + + D S + + ++D V+++H H G+LP+ + +G P
Sbjct: 1 MLDCGMHMGYSDERRFPDFSFINGGGSLTESLDCVIITHFHLDHCGSLPHMSEVVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGI---VVAPHV-------- 132
++ T P + + + D R+ T +N+ S + V+A ++
Sbjct: 61 IYMTYPTKAIAPVLLEDY---RKVQTEFKGDKNFFTSQMIKNCMKKVIAINIHEKIDVDN 117
Query: 133 --------AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
AGH+LG +++I E V+Y D+N ++HL +E ++P +LI+++
Sbjct: 118 ELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISEST 177
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 243
A + ++ RE F + T+ GG VL+PV + GR EL ++LE YW +L YPI
Sbjct: 178 YATTIRDSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYWERMNLKYPI 237
Query: 244 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 303
+F ++ Y + F+ W + I ++F N F KH+ +S +D+ GP +
Sbjct: 238 FFSQGLAEKANQYYRLFISWTNEKIKRTF--VERNMFDFKHIRPF-EQSYIDSP--GPMV 292
Query: 304 VLASMASLEAGFSHDIFVEWASDVKNLVL 332
+ ++ L G S +F +W SD KNL++
Sbjct: 293 LFSTPGMLHGGQSLRVFTKWCSDEKNLII 321
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 175/365 (47%), Gaps = 43/365 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D +S S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 TRL----------TY----SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
T++ TY S +++ + G+ + P+ AGH+LG ++ + G +++
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R ++HL + V+ VLIT++ + PR +RE AI+ L GG
Sbjct: 194 GDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRA 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+I +
Sbjct: 254 LLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRL 313
Query: 272 F-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
F +T R A+ K V L + D+ G ++LAS +++G S ++
Sbjct: 314 FAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTSRELL 371
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAYEEEQ 377
WA D +N V+ T GT+A+ + +P P + + + R P G+ E EQ
Sbjct: 372 ERWAPDPRNGVIITGYSVEGTMAKHIVHEPDQIPAIMTRASNTARRP--GQR----ENEQ 425
Query: 378 TRLKK 382
T + +
Sbjct: 426 TMIPR 430
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 35/333 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS----- 107
ST+D +L++H H +LPY + + + V+ T P + T D +
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLAKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPAS 135
Query: 108 --------VTRLTYSQN------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
V++L Q+ +H + GI P+ AGH+LG ++ I
Sbjct: 136 STSGTDGYVSQLYTEQDILSTLPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIA 195
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKT 206
G ++++ DY+R ++HL + V+ LIT++ + + PRQ+RE +I+
Sbjct: 196 GLNILFTGDYSRETDRHLIPAAVPRNVKIDCLITESTFGISTRTPRQERENALIKSITGI 255
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
L GG VL+P + G EL+LILEDYW H +P+Y+ + ++ + ++++E M
Sbjct: 256 LNRGGRVLMPTTAVGNTQELMLILEDYWQRHEEYRRFPMYYASGLAKKVMIVYQTYVETM 315
Query: 265 GDSITKSFETSRDNAFLLKH------VTLLINKSELDNAPD-GPKLVLASMASLEAGFSH 317
D+I F+ S A + +D D GP +VLAS L+ G S
Sbjct: 316 NDTIKAKFQASAAAASDSSGAGGPWDFNFIRQLKSMDRYEDVGPSVVLASPGMLQNGPSR 375
Query: 318 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ WA D KN V+ T GT+A+ + +P
Sbjct: 376 TLLERWAPDAKNGVIITGYSVEGTMAKTIMTEP 408
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 164/356 (46%), Gaps = 30/356 (8%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+ + DCG + DH D + + P + S + ++++H H+GAL Y
Sbjct: 20 VVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSCIIITHFHLDHVGALAYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ LG + PV+ T P L L + D + RR L S K
Sbjct: 80 TEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAECMKKVIAVDLRQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + AGH++G ++ +++Y DYN ++HL ++ +R +
Sbjct: 140 TVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LRLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + R RE F A+ K + GG VL+P + GR EL ++LEDYW
Sbjct: 199 LITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF ++ Y K + W I ++ S+ NAF K+V +S +D A
Sbjct: 259 NLKVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTY--SKHNAFDFKNVQKF-ERSMID-A 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
P GP ++ A+ L GFS ++F WA NLV GT+ L +D K
Sbjct: 315 P-GPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLMSDKHDK 369
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 165/366 (45%), Gaps = 40/366 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
VQ+ PL +V G ++DCG + F P S +DA+L++H
Sbjct: 25 VQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGFFGIASLPFFDEVDLSEVDAMLVTH 84
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL--SRRSVTRLTYSQ----- 115
H A+PY V T P + + T+ ++ S+ YS+
Sbjct: 85 FHLDHCAAVPYVTGHTSFRGRVLMTHPTKAI-VHTLLKDFVKVSKGGSGEGLYSERDLDA 143
Query: 116 --------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 167
++H + +GI V + AGH+LG ++ + G ++Y DY+R ++H+
Sbjct: 144 AMERTEVIDFHQTVDLDGIRVTAYRAGHVLGAAMFMVEVGGMRLLYTGDYSRIPDRHMPA 203
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLEL 226
L + RP +++ ++ + PR++RE F I + GG VLLPV + GR EL
Sbjct: 204 ADLPA-QRPHIVVVESTYGVSRHLPREEREQRFVQRIHTAVARGGRVLLPVVALGRAQEL 262
Query: 227 LLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKH 284
LLILE+YW H PIY + ++ I K+++E M + I ++F + N F KH
Sbjct: 263 LLILEEYWERHPELHGVPIYQASGLARRAISVYKAYIEMMNEDIKRAFTVA--NPFEFKH 320
Query: 285 VTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
++ L + + D+ +G S ++F W D +N V+ + GTLAR
Sbjct: 321 ISHLKSAAHFDD----------------SGMSRELFEAWCEDARNCVVIADFAVQGTLAR 364
Query: 345 MLQADP 350
+ +P
Sbjct: 365 DILGNP 370
>gi|440795785|gb|ELR16901.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 589
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 8/252 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
NYH + GI + AGH+LG ++ I G ++Y D++R++++HL ++
Sbjct: 19 NYHQQIEANGIKFWCYNAGHVLGAAMFMIEIAGVRILYTGDFSRQEDRHLMAAETPAYTA 78
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
V++ Y ++P ++ F + +R GG LLPV + GR ELLLIL++YW
Sbjct: 79 DIVIVESTYGVQIHEPRIERETRFTKLVHTIVRRGGRCLLPVFALGRAQELLLILDEYWE 138
Query: 236 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
H PIY+ + ++ + ++++ M ++I K F S N F+ KH++ L
Sbjct: 139 AHPELHKVPIYYASSLAKKCMTVYQTYINMMNENIRKQFAVS--NPFVFKHISNLKGMQH 196
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
D++ GP +V+AS L++G S ++F +W S+ KN V+ GTLA+ + ++ P
Sbjct: 197 FDDS--GPCVVMASPGMLQSGLSRELFEKWCSNAKNGVIIPGYCVEGTLAKHIMSE--PS 252
Query: 354 AVKVTMSRRVPL 365
V R +PL
Sbjct: 253 EVTAMDGRMLPL 264
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 177/376 (47%), Gaps = 40/376 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLASLPFFDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S ++ Y++ +YH +
Sbjct: 100 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQDHLSTFRQIEAIDYHTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G +++ DY+R ++HL + V+ VLIT
Sbjct: 160 TVSSIRITPYPAGHVLGAAMFLIEIAGLKIMFTGDYSRELDRHLVSATVPKGVKVDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW++HS
Sbjct: 220 ESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWSKHSDF 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI-------TKSFETSRDNA-----FLLKHVT 286
NYPIY+ + ++ + +++ M D+I K E + ++A + + +
Sbjct: 280 QNYPIYYASNLAKKCMVVYQTYTGAMNDNIKRLYAERAKEAEATGNSAGGGGPWDFRFIR 339
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L N LD D G ++LAS L+ G S ++ WA KN V+ T GT+A+
Sbjct: 340 SLKN---LDRFEDIGGCVMLASPGMLQNGVSRELLERWAPSDKNGVIITGYSVEGTMAKQ 396
Query: 346 LQADPPPKAVKVTMSR 361
+ + P ++ MSR
Sbjct: 397 IMQE--PDHIQAVMSR 410
>gi|344301243|gb|EGW31555.1| hypothetical protein SPAPADRAFT_67601 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1032
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 176/682 (25%), Positives = 275/682 (40%), Gaps = 164/682 (24%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH--PDTLHLGALPYAMK-- 76
L+S D F L D W D D + + + + S ++AVLLSH PD + G + +K
Sbjct: 20 LLSFDNEFKLLADPSW-DGKDANAVLFMEQHLSEVNAVLLSHSTPDFIS-GYVLLCLKFP 77
Query: 77 QLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQN 116
L + PV+ST PV +LG ++ + Y + VT L Y Q+
Sbjct: 78 NLMSTMPVYSTLPVNQLGRISTVEYYRANGVLGPLDSAILEIDEVDNWFDRVTLLKYQQS 137
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------G 167
+L + + P+ AGH LGG W I K + VIYA +N K+ LN G
Sbjct: 138 TNL--MDNKVTITPYNAGHTLGGAFWLIVKRIDKVIYAPAWNHSKDSFLNSASFISTSTG 195
Query: 168 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L S +RP IT A + P +++ E F + TL GG LLP +GR LEL
Sbjct: 196 NPLLSLLRPTAFIT-APDLGSTMPHKRRTEKFLQLVDATLANGGAALLPTSLSGRFLELF 254
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-ETSRDNA------- 279
+++++ + P+YFL+Y + + Y + L+WM S KS+ ETS D
Sbjct: 255 HLIDEHLQGAPI--PVYFLSYSGTRILSYASNLLDWMSGSFIKSWDETSGDGGRGGGKAL 312
Query: 280 ----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFT 334
F V LL++ SEL GPK+V S +++G S + F ++ K V+ T
Sbjct: 313 SSMPFDPSKVDLLLDPSELIQL-SGPKIVFCSGIDIKSGDISSETFQYLCNNEKTTVILT 371
Query: 335 ERGQF--GTLARML-------------------QADPPPKAVKVT-MSRRVPLVGEELIA 372
E+ Q G L ML A P K V + +R L G EL
Sbjct: 372 EKSQLENGGLNSMLYKEWYELTKKKLGGKIEDGTAVPLDKTVSIEDWTRETNLEGRELSD 431
Query: 373 YEEEQTRLKKEEALKASLVKEEESKASLGPDN-----------------------NLSGD 409
++E T+ +KE+ L + V++++++ L +N +
Sbjct: 432 FQERITQQRKEKLL--AKVRDKKNQNILNAENVDDEDSSEDEDEEEQVPEEETKGEAAKS 489
Query: 410 PMVIDA--NNANASADVVEPHGGRYRDILIDGF---VPPSTSV-------APMFPFY--E 455
DA A + D + H D + +P + + MFP++
Sbjct: 490 VTTTDAIVTTATSVVDELAAHEAFVMDHIKQSLKDNIPIDLKITHRLRPRSAMFPYFMTT 549
Query: 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEG------------------- 496
++DD+G+VI+ D+ DE + + G K DE
Sbjct: 550 RKQKFDDYGQVIDVADFEKTDETSNAKIIMEG--KKKFDEKRRWNEEKSNDDNKQKKNQN 607
Query: 497 -------------SASLI---LDA--KPSKVV---------SNELTVQVKCLLIFIDYEG 529
+ LI LD P K V S ++++C L F+D G
Sbjct: 608 KQQANKLTPQEQLNQQLIQKNLDTLYNPRKRVPLNAASSFASQSQMLKIRCGLSFVDLSG 667
Query: 530 RADGRSIKTILSHVAPLKLVLV 551
D RS+ I+ + P L+L+
Sbjct: 668 LVDLRSLGIIVQALKPYNLLLL 689
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 154/320 (48%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+D +L++H H AL Y M++ V+ T P L M D S T
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFKNGKGKVYMTHPTKALHKFMMQDFVRMSSSST 116
Query: 110 --------------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+T + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DTLFTPLEMSMSLASITTVSAHQVINPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + V P VLI ++ + + PR+ +E F + + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAEIPP-VHPDVLIVESTYGVQSHEPREDKETRFTNLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YWA+H N P+Y+ + ++ + ++++ M ++ F
Sbjct: 236 LPTFALGRAQELLLILDEYWAKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNANVRTRF 295
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
DN F+ KH+T + E A P +VLAS ++ G S ++ WA D +N
Sbjct: 296 -AKHDNPFVFKHITNVPGTRGWERKIAEGPPCVVLASPGFMQTGPSRELLELWAPDGRNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GT+AR + +P
Sbjct: 355 LIVTGYSIEGTMAREILTEP 374
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 172/390 (44%), Gaps = 46/390 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD----QYLSRRS----------- 107
H GALPY + + VF TEP + L D S+ S
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 108 ----------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
R+ ++H + GI V+ AGH+LG ++ I
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFLIE 289
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 204
G ++Y D++R +++H+ + V +LI ++ +H RQ RE F A+
Sbjct: 290 IGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLKAVV 348
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+ GG LLPV + GR ELLLILE+YW H + PI FL+ +SS +F++
Sbjct: 349 DIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVD 408
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
G+++ +S +N F + V + + + + DGP +V+A+ L++G S +IF
Sbjct: 409 MCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA D KN V+ T GTLA L+ +P
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 37/354 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E +Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
KH+ +++ DN GP + E G D+ WA + + F
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVG-------EGGPWLDLVQAWAGEEEGAATFC 344
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 164/349 (46%), Gaps = 33/349 (9%)
Query: 22 LVSIDGFNFLIDCGWN----DH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75
+VSI + DCG + DH F L ID V+++H H G LPY
Sbjct: 18 VVSIQNKTIMFDCGMHMGHSDHRRFPDFKLLGAGPYTGVIDCVIITHFHMDHCGGLPYFT 77
Query: 76 KQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTY----SQNYHLSGKG----- 123
++ + P++ T P + + + D Y R ++ Y +N K
Sbjct: 78 ERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKFQYPTYNEENIKACMKKVIPIA 137
Query: 124 --------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+ + P+ AGH+LG ++ + E V+Y DYN ++HL+G + V
Sbjct: 138 MDETVEIEKDFTITPYYAGHVLGAAMFHVRVGDESVVYTGDYNMTPDRHLDGAWMPK-VY 196
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P VLIT++ AL + R+++E F +++ + ++ GG VL+PV + GR EL L+L+ +W
Sbjct: 197 PNVLITESTYALLVRDCRREKEREFIESVVQCVKNGGKVLIPVFALGRAHELCLLLDTHW 256
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+ L+ PIY ++ D K F+++ + I + + N F +HV S L
Sbjct: 257 EKSKLSIPIYTSATLTHKANDIYKQFIDYTHEHIRNTMH--KRNLFDFQHVKQF--DSNL 312
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
+ +GP ++ +S L +G S IF +W D KN+V+F GT+
Sbjct: 313 ASL-EGPMILFSSPGMLHSGPSLSIFKKWCGDPKNMVIFPGYCVRGTIG 360
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 173/368 (47%), Gaps = 31/368 (8%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW----ND--HF-DPSLLQPLSKVASTID 56
+++V PL + +V+I N + DCG ND F D S + + ID
Sbjct: 2 TIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTY 113
V+++H H GALP+ + G P++ T P + + + D + ++ T
Sbjct: 62 CVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFT 121
Query: 114 SQ------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+Q N H + K E + + + AGH+LG ++ E V+Y DYN
Sbjct: 122 AQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMT 181
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ V+P VLIT+ A + ++ RE F I + + GG VL+PV +
Sbjct: 182 PDRHLGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFA 240
Query: 220 AGRVLELLLILEDYWAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
GRV EL ++++ YW + +L + PIYF ++ Y K F+ W I ++F + N
Sbjct: 241 LGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTF--VKRN 298
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F KH+ +S L +AP G ++ A+ L AG S ++F +WA + N+ +
Sbjct: 299 MFDFKHIKPF--QSHLVDAP-GAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCV 355
Query: 339 FGTLARML 346
GT+ L
Sbjct: 356 VGTVGNKL 363
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ + T++VKC + + + AD + I ++ P ++LVHG E L Q +K +
Sbjct: 383 IDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEM 442
Query: 570 CPHVYTP 576
+ Y P
Sbjct: 443 GVNCYYP 449
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 158/320 (49%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+D +L++H H AL Y ++ ++ T P L M D S +
Sbjct: 58 STVDVILITHFHLDHAAALTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRMGSSSS 117
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 118 DALFSPMELSVSLASIIPVSAHQVISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 177
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + +RP VLI ++ + R+++E+ F + + +R GG+VL
Sbjct: 178 DYSREEDRHLVKAEVPP-IRPDVLIVESTFGVQTLEGREEKELRFTNLVHNIIRRGGHVL 236
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N P+Y+ + ++ + ++++ M ++ F
Sbjct: 237 LPTFALGRAQELLLILDEYWKKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNSNVRSRF 296
Query: 273 ETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ + + + +GP +VLAS +E+G S ++ WA D +N
Sbjct: 297 -AKRDNPFVFKHISNVPHSRGWERKIAEGPSCVVLASPGFMESGPSRELLELWAPDSRNG 355
Query: 331 VLFTERGQFGTLARMLQADP 350
V+ T GT+AR +Q +P
Sbjct: 356 VILTGYSIEGTMARDIQTEP 375
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 184/383 (48%), Gaps = 32/383 (8%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
++V PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKVMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFVT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRLTYSQ---- 115
H H ALP+ ++ V+ T P + LL Y + ++ S Y++
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADF-YTETDLV 124
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+YH +GI V AGH+LG ++ + + ++Y D++R +++HL
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 184
Query: 167 GTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
ES + LIT++ + PR +RE F + ++ GG LLPV + GR
Sbjct: 185 AA--ESPGCKIDALITESTYGVQCHLPRSEREGRFTSIVQNVVQRGGRCLLPVFALGRAQ 242
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLILE++W+ ++ PIY+ + ++ + ++++ M + I K + N F
Sbjct: 243 ELLLILEEHWSSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKL--SLVRNPFAF 300
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K+V L D+ +GP +++AS L++G S D+F W SD KN V+ GTL
Sbjct: 301 KYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTL 358
Query: 343 ARMLQADPPPKAVKVTMSRRVPL 365
A+ + ++ PK ++ +R+ L
Sbjct: 359 AKEILSE--PKEIEALNGKRLRL 379
>gi|365764103|gb|EHN05628.1| Ysh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 699
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 11/282 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+YH + GI AGH+LG +++I G V++ DY+R ++HLN +
Sbjct: 64 DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSS 123
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
+++ + ++P + I T+ GG VLLPV + GR E++LIL++YW+
Sbjct: 124 NVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWS 183
Query: 236 EHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
+H+ PI++ + ++ + ++++ M D I K F S+ N F+ K+++ L N
Sbjct: 184 QHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRN 243
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR--MLQA 348
+ + GP ++LAS L++G S D+ W + KNLVL T GT+A+ ML+
Sbjct: 244 LEDFQDF--GPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEP 301
Query: 349 DPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKKEEALKA 388
D P ++T+ RR + A+ + Q L+ E + A
Sbjct: 302 DTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISA 343
>gi|238880762|gb|EEQ44400.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 931
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 157/660 (23%), Positives = 262/660 (39%), Gaps = 146/660 (22%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L S PV
Sbjct: 27 FKLIADPSWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLCIKFPILMSSVPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGE 124
+ST PV +LG ++ + Y + V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGFLGPVDSAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 175
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLR 203
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 236 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 296 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 340
GPK+V S L +G S + F +D + ++ TE+ ++
Sbjct: 321 KL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDERTTIILTEKTTMNFASSLSSVLYTEWD 379
Query: 341 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 391
+LA+ + V + ++ V L G EL ++E+ + +KE+ L + V
Sbjct: 380 SLAKKRGGGESEDGIAVPIDKNISLKNWTKEVELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 392 KEEESKASLGPDN----------------------NLSGDPMVIDANNANASADVVEPHG 429
++++++ L D N S + ++ N N + V P+
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDDEGDNEAEKQKGNTSSNLLIKQYQNINVADSNVAPNE 497
Query: 430 ----GRYRDILIDGFVPPSTSVAPM--------------FPFY--ENNSEWDDFGEVINP 469
+ + D P+ FP++ + ++DD+GEVI
Sbjct: 498 VNPLATHEAFITDHIKQSLEKNLPIDLKITHKLRPRQATFPYFATAHKQKFDDYGEVIKI 557
Query: 470 DDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------ 517
+DY DE + + + + G ++ +A+ + +K +N+LT Q
Sbjct: 558 EDYQRHDE-VSHSKIIMEGKRKFDEKRTANNRRNKNQNKQQANKLTPQEQVNRKLLQKYL 616
Query: 518 --------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
V+C L F+D G D RS+ I+ + P L+L+
Sbjct: 617 DTLSNPKKRVGLNYGTKKKSETQKLKVRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 676
>gi|328908757|gb|AEB61046.1| cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 256
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 72/267 (26%)
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVC 570
++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K +
Sbjct: 2 SIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI- 60
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENG 626
VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G
Sbjct: 61 -KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTG 119
Query: 627 ML-----------------------------------------------SLLPISTPAPP 639
++ ++P P PP
Sbjct: 120 VILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEESEIIPTLEPLPP 179
Query: 640 -----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 694
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T
Sbjct: 180 HEVPGHQSVFMNEPRLSDFKQALLREGIQAEFVGGVLVCNNQVAVRR----------TET 229
Query: 695 QQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 230 GRIGLEGCLCQDFYRIRDLLYEQYAIV 256
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ VF T P +Y+ LL + + S
Sbjct: 55 SKVDVLLISHFHLDHAASLPYVMQHTNFKGRVFMTYPTKAIYKW-LLNDFVRVTSIADDN 113
Query: 105 --------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
S+ R+ + +YH + + EGI + AGH+LG ++ + G
Sbjct: 114 DENSANFLYTDEDLNESLDRIE-TIDYHSTIEVEGIRFTAYHAGHVLGAAMFFVELGGLK 172
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 209
++ DY+R +++HL+ L RP +LIT++ PR +RE I T++
Sbjct: 173 FLFTGDYSREEDRHLSSAELPP-SRPDLLITESTFGTATHVPRVEREAKLTHVIHSTIQQ 231
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG LLPV + GR E+LLIL++YW + N PIY+ + ++ + + ++ M DS
Sbjct: 232 GGRCLLPVFALGRAQEILLILDEYWQNNPELQNVPIYYASDLAKKCMAVYQRYVNMMNDS 291
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
I K F + N F K++ + N ++++ +++AS L+ G S I +W+ D
Sbjct: 292 IRKKFTETNQNPFHFKYIKNITNIEKINDLDSS--VLIASPGMLQNGISRKILEKWSPDP 349
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N + T GT+A++L +P
Sbjct: 350 RNSCILTGYSVEGTMAKILLTEP 372
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 148/319 (46%), Gaps = 32/319 (10%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY------------ 102
ID +L++H H GALPY +K ++ T P + L + D
Sbjct: 63 IDLILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQDLI 122
Query: 103 ------LSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 156
S +++ + Y Q H +GI + + AGH+LG ++ + DG V+Y D
Sbjct: 123 NEQSIEQSLKNIDCIDYDQEIHY----QGIKLKCYNAGHVLGAAMFMVEIDGVRVLYTGD 178
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLL 215
Y+ KE+HL L + VLI +A Y ++ ++ E F I TL GGNVLL
Sbjct: 179 YSTEKERHLRPAQL-PLEKIHVLIVEATYGDTQHETRTKREENFLKEIVSTLNGGGNVLL 237
Query: 216 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
PV + GR ELL+IL++YW+++ +PIY ++ + +G+ K
Sbjct: 238 PVFATGRCHELLIILDEYWSKNPQVQQFPIYSTCTLAIKCTHIFQKHFNKLGNKYHKG-- 295
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F H+ + ++ N PK+V+AS L++G S I+ W D KN V+
Sbjct: 296 ---ENLFKFNHINTKKHLQDILNN-QKPKVVMASPGLLQSGHSKQIYEYWCKDEKNQVII 351
Query: 334 TERGQFGTLARMLQADPPP 352
T GT+A L +P P
Sbjct: 352 TGPAVQGTIAHQLIHNPEP 370
>gi|392862603|gb|EAS36741.2| cleavage and polyadenylylation specificity factor [Coccidioides
immitis RS]
Length = 1026
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 117/441 (26%), Positives = 175/441 (39%), Gaps = 132/441 (29%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL------ 80
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 81 -------------------SAPVFST--------------------EPVYRLGLLTMYDQ 101
SAP+ ST +P G LT D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSGSVPTQDPTAPAGALTEGDT 146
Query: 102 YLSRRS-------------------VTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 137
S + + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 185
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 186 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 234
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADGPD 326
Query: 235 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 273
E+SL N +Y T+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNANLYLAGKKVHGTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 274 ---------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 314
+ + +A F +H+ ++ K++L+N +GPK+++AS SL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDTSLDWG 446
Query: 315 FSHDIFVEWASDVKNLVLFTE 335
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 128/346 (36%), Gaps = 113/346 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 496
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 497 ----------------------SASLILD-----------------AKPSKVVSNELTVQ 517
S SL L+ + P+K V
Sbjct: 697 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 572
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF---KKLG-----------D 610
++TPQ+ +T+D + D A+ V+LS L+ + + + LG D
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 611 YEIAWVDAEVGKTENGMLS-----------------------LLPISTPAPPH------- 640
D E + ML + P+ PP+
Sbjct: 877 TATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANEALIKKEVFPLLDVLPPNLAAATRS 936
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 154/320 (48%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+D +L++H H AL Y ++ V+ T P L M D S +
Sbjct: 57 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFMRMSSSTS 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLDLSMSLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R ++ HL + F RP VLI ++ + R+ +E F + + +R GG+VL
Sbjct: 177 DYSREEDCHLVKAEVPPF-RPDVLIIESTYGVQTLECREDKEQRFTNLVHSIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++ F
Sbjct: 236 LPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANVRSRF 295
Query: 273 ETSRDNAFLLKHVTLLINKSELD-NAPDGPK-LVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ L + + DGP +VLAS + G S ++ WA D +N
Sbjct: 296 -AKRDNPFVFKHISNLPHTRGWERKVADGPPCVVLASPGFVTVGASRELLEMWAPDSRNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GT+AR +Q++P
Sbjct: 355 IIITGYSIEGTMARDIQSEP 374
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 172/390 (44%), Gaps = 46/390 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD----QYLSRRS----------- 107
H GALPY + + VF TEP + L D S+ S
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 108 ----------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
R+ ++H + GI V+ AGH+LG ++ I
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFLIE 289
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 204
G ++Y D++R +++H+ + V +LI ++ +H RQ RE F A+
Sbjct: 290 IGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLKAVV 348
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+ GG LLPV + GR ELLLILE+YW H + PI FL+ +SS +F++
Sbjct: 349 DIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVD 408
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
G+++ +S +N F + V + + + + DGP +V+A+ L++G S +IF
Sbjct: 409 MCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA D KN V+ T GTLA L+ +P
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 168/351 (47%), Gaps = 37/351 (10%)
Query: 22 LVSIDGFNFLIDCG-------WNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I + DCG + D LL P ID V+++H H G LPY
Sbjct: 18 VVTIQNRTIMFDCGMHMGHSDYRRFPDFKLLGP-GPYTGVIDCVIITHFHMDHCGGLPYF 76
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRL---TYSQNYHLSGKGEGIV- 127
++ S P++ T P + + + D Y R V + TY++ ++ + I+
Sbjct: 77 TERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKFQHPTYNEE-NIKNCMKKIIP 135
Query: 128 --------------VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF 173
+ P+ AGH+LG ++ + E V+Y DYN ++HL+G +
Sbjct: 136 ISIEETVEIEKDFTITPYYAGHVLGAAMYHVKVGDESVVYTGDYNMTPDRHLDGAWMPK- 194
Query: 174 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
V P+VLIT++ AL + R+++E F +++ + ++ GG VL+PV + GR EL L+L+
Sbjct: 195 VYPSVLITESTYALLVRDCRREKERDFIESVVQCVKNGGKVLIPVFALGRAHELCLLLDT 254
Query: 233 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
+W + L+ PIY ++ D K F+++ + I + + N F +HV S
Sbjct: 255 HWEKTKLDIPIYTSATLTHKANDIYKQFIDYTHEHIRSTLH--KRNLFDFRHVKQF--DS 310
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 343
L + +GP ++ +S L +G S IF +W D N+V+F GT+
Sbjct: 311 NLASL-EGPMILFSSPGMLHSGPSLSIFKKWCGDPNNMVIFPGYCVRGTIG 360
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 168/365 (46%), Gaps = 37/365 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHLSGKGE---------- 124
VF T P + + D S ++ Y++ HL+ +
Sbjct: 101 NFKGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQDHLNTFPQIEAIDYYTTH 160
Query: 125 ---GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGMNIFFTGDYSREQDRHLVSAEVPRGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 221 ESTYGIASHVPRVEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHQEY 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------------FLLKHV 285
PIY+ + ++ + ++++ M D+I + F A + K++
Sbjct: 281 QKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERLAEAEASGKSGAGGGGPWDFKYI 340
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L N D+ GP ++LAS L+ G S ++ WA KN V+ T GT+A+
Sbjct: 341 RSLKNLDRFDDL--GPCVMLASPGMLQNGVSRELLERWAPSDKNGVVITGYSVEGTMAKQ 398
Query: 346 LQADP 350
+ +P
Sbjct: 399 IMQEP 403
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 165/345 (47%), Gaps = 28/345 (8%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLGLS--APV 84
L DCG + + P S ID +L++H H LPY + Q L+ A +
Sbjct: 34 TILFDCGVHPAYSGLAALPFFDEIDPSEIDVILITHFHLDHCAGLPYLVTQTNLNPRARI 93
Query: 85 FSTEP---VYR--LGLLT----------MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVA 129
T P VYR +G +Y + +++ R+ +YH G+ ++
Sbjct: 94 LMTHPTKAVYRSLIGDFVRVGSSDYAGIIYTESDLNQTMARIE-CIDYHQHIDVSGVRIS 152
Query: 130 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN 189
+ AGH+LG ++ + G V+Y D++R++++HL + + VLI ++ +
Sbjct: 153 AYNAGHVLGAAMFLVEVAGVSVLYTGDFSRQEDRHLMEAEIPRGIHIDVLICESTYGVQV 212
Query: 190 QPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFL 246
PR+ RE F +++ ++ GG LLPV + GR ELLLILE+YW H PIY+
Sbjct: 213 HEPRRVREARFTQRVAEVVKRGGRCLLPVFALGRAQELLLILEEYWDAHPELQEIPIYYS 272
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVL 305
+ ++ + +++ M +I + + N F K+V +N LD D GP + +
Sbjct: 273 SSIAKRCMAIYSTYIHQMNQNIQQRYRRF-GNPFAFKYV---MNIRSLDEFEDSGPCVFM 328
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
AS L++G S +F +W SD +N V+ GTLA+ + DP
Sbjct: 329 ASPGMLQSGMSRRLFEKWCSDRRNGVILPGYSVQGTLAKYILTDP 373
>gi|313215108|emb|CBY42824.1| unnamed protein product [Oikopleura dioica]
Length = 323
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 49/312 (15%)
Query: 449 PMFPFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKL 493
P+FPF EN +WDD+GE+INPDDY I + +Q ++ G +D +
Sbjct: 22 PLFPFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRK 81
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+ + + P+K + V ++C + FI++EGR DG S +LS + P +L+L+
Sbjct: 82 KQKEEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRT 141
Query: 554 SAEATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--D 610
+ E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D
Sbjct: 142 KEKYKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKD 201
Query: 611 YEIAWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLK 649
E+A + V + ENG + +L P++ + H S+ + D K
Sbjct: 202 IEVARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTK 261
Query: 650 MADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYK 709
+ +LK L G+ EF GG L C V+I++ S I +EG L EDY+
Sbjct: 262 LTELKSNLIDCGMHAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFI 311
Query: 710 IRAYLYSQFYLL 721
+R +Y + ++
Sbjct: 312 VRKMVYDNYAIV 323
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 36/364 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYD-------------QYLSRRSVTRLTYSQ----NYHLSG 121
VF T P + + D Q + + T++Q +YH +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIIDSVRVGGASSGGGSQPVYTEADHLTTFAQIEAIDYHTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I V P+ AGH+LG ++ I G + + DY+R ++HL + V+ VLIT
Sbjct: 160 TISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDDRHLVSAEVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +++ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 220 ESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALGRAQELLLILDEYWGKHPEF 279
Query: 239 LNYPIYFL------------TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 286
PIY+ TYV S + + F E M ++ S R + K++
Sbjct: 280 QKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEAEANSTSGGRGGPWDFKYIR 339
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S + WA KN V+ T GT+A+ +
Sbjct: 340 SLKNLDRFDDV--GGCVILASPGMLQNGISRQLLERWAPSDKNGVIITGYSVEGTMAKQI 397
Query: 347 QADP 350
+P
Sbjct: 398 MQEP 401
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 171/369 (46%), Gaps = 28/369 (7%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
++ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 ALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL--------------LTMYDQYLS 104
H H GALP+ +++ F +T+ +YR+ L +Y +
Sbjct: 70 HFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLYTEDDL 129
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+S+ ++ + ++ + GI P+VAGH+LG + I G V+Y D++ +++H
Sbjct: 130 EKSMAKIE-TIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + V P VLIT++ R RE F + + GG L+P + G
Sbjct: 189 LCAAEIPP-VSPQVLITESTYGTQTHEDRSVREKRFTQMVHDIVTRGGRCLIPAFAIGPA 247
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + + N F+
Sbjct: 248 QELMLILDEYWEAHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAIKNPFI 305
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
KHV+ L + ++A GP +VLA+ L++GFS ++F W SD KN + GT
Sbjct: 306 FKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYCVEGT 363
Query: 342 LARMLQADP 350
LA+ + +P
Sbjct: 364 LAKHILTEP 372
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 171/369 (46%), Gaps = 28/369 (7%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
S+ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 SLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL--------------LTMYDQYLS 104
H H GALP+ +++ F +T+ +YR+ L +Y +
Sbjct: 70 HFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDDL 129
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+S+ ++ + ++ + GI P+VAGH+LG + I G V+Y D++ +++H
Sbjct: 130 EKSMAKIE-TIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L + + P VLIT++ R RE F + + GG L+P + G
Sbjct: 189 LCAAEIPP-ITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFAIGPA 247
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + + N F+
Sbjct: 248 QELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAVKNPFI 305
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
KHV+ L + ++A GP +VLA+ L++GFS ++F W D KN + GT
Sbjct: 306 FKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGT 363
Query: 342 LARMLQADP 350
LA+ + ++P
Sbjct: 364 LAKHILSEP 372
>gi|68471691|ref|XP_720152.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
gi|68471954|ref|XP_720020.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46441870|gb|EAL01164.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46442007|gb|EAL01300.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
Length = 931
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 157/660 (23%), Positives = 262/660 (39%), Gaps = 146/660 (22%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L S PV
Sbjct: 27 FKLIADPSWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLCIKFPILMSSIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGE 124
+ST PV +LG ++ + Y + V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGFLGPVDSAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 175
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLR 203
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 236 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 296 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 340
GPK+V S L +G S + F +D ++ TE+ ++
Sbjct: 321 KL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDEHTTIILTEKTTMNFASSLSSVLYTEWD 379
Query: 341 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 391
+LA+ + V + ++ V L G EL ++E+ + +KE+ L + V
Sbjct: 380 SLAKKRGGGESEDGIAVPIDKNISLKNWTKEVELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 392 KEEESKASLGPDN----------------------NLSGDPMVIDANNANASADVVEPHG 429
++++++ L D N S + ++ N N + V P+
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDDEGDNEAEKQKGNTSSNLLIKQYQNINVADSNVAPNE 497
Query: 430 ----GRYRDILIDGFVPPSTSVAPM--------------FPFY--ENNSEWDDFGEVINP 469
+ + D P+ FP++ + ++DD+GEVI
Sbjct: 498 VNPLATHEAFITDHIKQSLEKNLPIDLKITHKLRPRQATFPYFATAHKQKFDDYGEVIKI 557
Query: 470 DDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------ 517
+DY DE + + + + G ++ +A+ + +K +N+LT Q
Sbjct: 558 EDYQRHDE-VSHSKIIMEGKRKFDEKRTANNRRNKNQNKQQANKLTPQEQVNRKLLQKYL 616
Query: 518 --------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
V+C L F+D G+ D RS+ I+ + P L+L+
Sbjct: 617 DTLSNPKKRVGLNYGTKKKSETQKLKVRCGLSFVDLSGQVDLRSLGIIVQALKPYNLILL 676
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 182/384 (47%), Gaps = 36/384 (9%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRLTYSQ---- 115
H H ALP+ ++ V+ T P + LL Y + ++ S Y++
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADF-YTETDLV 124
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+YH +GI V AGH+LG ++ I + V+Y D++R +++HL
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDRHLK 184
Query: 167 GTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
ES + LIT++ + PR +RE F + ++ GG LLPV + GR
Sbjct: 185 AA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQ 242
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLILE++W ++ PIY+ + ++ + ++++ M + I K R N F
Sbjct: 243 ELLLILEEHWGSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK-LSLVR-NPFAF 300
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K+V L D+ +GP +++AS L++G S D+F W SD +N V+ GTL
Sbjct: 301 KYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSRNAVIIPGYCVDGTL 358
Query: 343 ARMLQADPPP------KAVKVTMS 360
A+ + ++P K +++ MS
Sbjct: 359 AKEILSEPKEIEALNGKKLRLNMS 382
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRL---------------- 93
ST+DA+L++H H AL Y M++ V+ T P L
Sbjct: 57 STVDALLVTHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDYVRMSSSSS 116
Query: 94 -GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
L T D +S S+ ++ Q L G+ P+ AGH+LG ++ I G ++
Sbjct: 117 DALFTPLDMSMSLSSIIAISAHQ---LITPCPGVTFTPYHAGHVLGACMFLIDIAGLKIL 173
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 211
Y DY+R +++HL + VRP VLI ++ + + R+ +E F + +R GG
Sbjct: 174 YTGDYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLECREDKEARFTGLVHSIIRRGG 232
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
+VLLP + GR ELLLIL++YW H N PIY+ + ++ + ++++ M +I
Sbjct: 233 HVLLPAFALGRAQELLLILDEYWKRHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNIR 292
Query: 270 KSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
F RDN F+ KH++ L E A P +VLAS ++G S ++ WA D
Sbjct: 293 TRF-AKRDNPFVFKHISNLPQPKGWERKIAEGPPCVVLASPGFCQSGPSRELLELWAPDA 351
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N + T GT+AR + +P
Sbjct: 352 RNGFILTGYSVEGTMARDILNEP 374
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 174/365 (47%), Gaps = 45/365 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P+ AGH+LG ++ I+ G +
Sbjct: 134 QRTTLYTEHDHL----STLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLN 189
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 190 ILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 249
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLILE+YW H PIY++ + + ++++ M D+
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + K+V L + D+ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDV--GGCVMLASPGMLQTGT 367
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S ++ WA + +N V+ T GT+A+ L + P + MSR +G + +
Sbjct: 368 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PDQIHAVMSRAATGMGRTRMNGND 425
Query: 376 EQTRL 380
E+ ++
Sbjct: 426 EEQKI 430
>gi|296815164|ref|XP_002847919.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
gi|238840944|gb|EEQ30606.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
Length = 1000
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 173/407 (42%), Gaps = 98/407 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA------MKQLGL 80
G L+D GW++ FD S L+ L + T+ +LL+H HLGA + ++ L
Sbjct: 27 GVKILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAFVHCSFGRTYLQNLYA 86
Query: 81 SAP---------------------VFSTEPVY------------RLGLLTMYDQYLSR-- 105
SAP + ST P R+ L ++ ++R
Sbjct: 87 SAPLAATFLPSTSVTASDGSSGLAIPSTTPTSQGLSGPDNTGSGRILLPPPSNEDIARYF 146
Query: 106 RSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+ L YSQ G+ + + AGH +GGT+W I E ++YAVD+++
Sbjct: 147 SLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQA 206
Query: 161 KEKHLNGT------------VLESFVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISK 205
+E + G V+E +P LI A P R++R+ + D I
Sbjct: 207 RENVIAGAAWFGSSGGSGTEVIEQLRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRS 266
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDY 256
+ GG VLLP DS+ RVLE+ +LE W E + N P+Y + T+
Sbjct: 267 CVAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSGDSNEVLKNAPLYLAGKKAHGTMRL 326
Query: 257 VKSFLEWMGDSITKSFETSRD--------------------------NAFLLKHVTLLIN 290
+S LEWM ++I + FE + F KH+ L+ +
Sbjct: 327 ARSMLEWMDENIVREFEGNDGVEVGAGKSGGGAANQPSKSAQGQKSLGPFTFKHLNLVEH 386
Query: 291 KSELDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
K++LD+ D GPK++L+ ASLE G S + + A+ NL++ TE
Sbjct: 387 KAKLDSILDSKGPKVILSPDASLEWGLSRHVLRQIAAGSDNLIIMTE 433
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 58/236 (24%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G+ T L C
Sbjct: 719 PSKATIVYSSLSLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGGTKNETMALAAEC 778
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ + V+TP I ++ID + D A+ V+LS L+ + ++ + +
Sbjct: 779 RNLLAANRGASTTSTTKLGVDVFTPSIGDSIDASVDTNAWMVRLSRPLVRRLKWQNVSNL 838
Query: 612 EI------------------------------AW-----VDAEVGKT-----ENGMLSLL 631
+ AW V+++ ++ + +L +L
Sbjct: 839 GVVALVGNLQSSQAISLQEEVLEQSKSKGKGEAWKATGPVESQANQSLIKNEKIPVLDIL 898
Query: 632 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
P S A K + VGDL+++DL+ + S G EF G G L +V +RK G
Sbjct: 899 PASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDGFVAVRKAG 954
>gi|294656507|ref|XP_002770276.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
gi|199431523|emb|CAR65632.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
Length = 959
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 162/689 (23%), Positives = 266/689 (38%), Gaps = 172/689 (24%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQ 77
L+S D L D WN + +L + + +D +LLSH + L
Sbjct: 20 LLSFDNDIKILADPSWNGNNHNDILY-MEQYLKEVDIILLSHSTPEFISGFVLLCIKFPN 78
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNY 117
L + P++ST PV +LG ++ + Y + + L + Q
Sbjct: 79 LMSNIPIYSTLPVNQLGRVSTVEYYRANGVLGPLNNSILEVDEVDEWFDKIIPLKFFQT- 137
Query: 118 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GT 168
LS +V+ P+ AGH LGGT W IT+ E +IYA +N K+ LN G
Sbjct: 138 -LSVFDNRLVITPYNAGHTLGGTFWLITRRLEKIIYAPSWNHSKDSFLNSASFLSSSSGN 196
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
L +RP VLIT+ + +++ E F + + TL GG VLLP +GR LELL
Sbjct: 197 PLSQLMRPTVLITNT-DLGSTMSHKKRTEKFLNLVDATLANGGAVLLPTSLSGRFLELLH 255
Query: 229 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------- 279
+++ + S P+YFL+Y + + Y + LEWM + K +E +
Sbjct: 256 LIDQHL--QSAPIPVYFLSYSGTKVLSYASNLLEWMSSQLVKEWEEASSVNNNSSNKNNF 313
Query: 280 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERG 337
F V LL + SEL GPK+V S L+ G S + D K ++ TE+
Sbjct: 314 PFDPSKVDLLSDPSELVQL-SGPKIVFCSGIDLKNGDMSSEALQYLCQDEKTTIVLTEKT 372
Query: 338 QFG--------------TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYE 374
FG L + Q V V + +R PL+G EL +
Sbjct: 373 HFGLDNTINSQLYHDWYNLTKQKQGGTVEDGVAVPLEKVISLENWNREEPLIGAELTDF- 431
Query: 375 EEQTRLKKEEALKASLVKEEESKASLGPD------------------------------- 403
+E+ L++++ L A V++ +++ L D
Sbjct: 432 QEKINLQRKQKLLAK-VRDRKNQNLLNADTINGDDSSSDEEDDVVSSDDEAAALKYTEAP 490
Query: 404 -----NNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMFP 452
+ + P V+ + +A + H R D+ I + P + MFP
Sbjct: 491 ANADASTTTNVPAVVKVDELSAHEAFITDHVKQTLEANRPLDLKITHKLKPRQA---MFP 547
Query: 453 FY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM--------------------HIGGDD 490
+ + ++DD+GEVI+ D+ K ED + + G
Sbjct: 548 YIVGSHKQKFDDYGEVIDIKDF-QKQEDTSSNKLIMESKRKFEQNEKRKWGNVDNKGKGR 606
Query: 491 GKLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 522
GK + + P ++++N+L ++++C L
Sbjct: 607 GKNSDKDNNNQNKITPQELLNNQLLQKNLDTLFSPRKRIPLNAASSFSSKPQELRMRCGL 666
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLV 551
F+D G D RS+ I+S + P L+L+
Sbjct: 667 SFVDLSGLVDMRSLSLIVSSLKPYNLLLL 695
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 160/343 (46%), Gaps = 25/343 (7%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 61 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 118
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ------------NYHLSGKGEGIVVAP 130
VF T + M D S + ++ YH GI P
Sbjct: 119 RVFMTSATKAFYKMVMNDFLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNGIRFQP 178
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++ N +
Sbjct: 179 FNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAESTNGIREL 237
Query: 191 PPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R++R +F + ++ GG L+PV + GR ELLLILE+YW H + PIY+ +
Sbjct: 238 ESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYAS 297
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + ++F+ M D + + R N F+ K++ L+ ++ GP +VLAS
Sbjct: 298 SLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GPCVVLAS 354
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 355 PGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 397
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 171/390 (43%), Gaps = 46/390 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD----QYLSRRS----------- 107
H GALPY + + VF TEP + L D S+ S
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 108 ----------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
R+ ++H + GI V+ AGH+LG ++ I
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFLIE 289
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 204
G ++Y D++R ++H+ + V +LI ++ +H RQ RE F A+
Sbjct: 290 IGGVRMLYTGDFSRESDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLKAVV 348
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+ GG LLPV + GR ELLLILE+YW H + PI FL+ +SS +F++
Sbjct: 349 DIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFVD 408
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
G+++ +S +N F + V + + + + DGP +V+A+ L++G S +IF
Sbjct: 409 MCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA D KN V+ T GTLA L+ +P
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 160/343 (46%), Gaps = 25/343 (7%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 60 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 117
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ------------NYHLSGKGEGIVVAP 130
VF T + M D S + ++ YH GI P
Sbjct: 118 RVFMTSATKAFYKMVMNDFLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNGIRFQP 177
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++ N +
Sbjct: 178 FNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAESTNGIREL 236
Query: 191 PPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R++R +F + ++ GG L+PV + GR ELLLILE+YW H + PIY+ +
Sbjct: 237 ESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYAS 296
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + ++F+ M D + + R N F+ K++ L+ ++ GP +VLAS
Sbjct: 297 SLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GPCVVLAS 353
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 354 PGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 396
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 167/346 (48%), Gaps = 48/346 (13%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + VTPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDVLTVTPL-GAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 75 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-VSK 127
Query: 106 RSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
S+ + + + ++H + + GI + AGH+LG ++ + G ++
Sbjct: 128 VSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRLL 187
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGN 212
Y DY+R +++HL + F +I Y +QP + + F D I T+ GG
Sbjct: 188 YTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTISQGGR 247
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M + I
Sbjct: 248 VLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKKCMTVYQTYILSMNERIRN 307
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 316
F S N F KH++ L + + + GP +V+AS L++G S
Sbjct: 308 QFANS--NPFKFKHISPLNSIEDFTDV--GPSVVMASPGGLQSGLS 349
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 160/343 (46%), Gaps = 25/343 (7%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 60 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 117
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ------------NYHLSGKGEGIVVAP 130
VF T + M D S + ++ YH GI P
Sbjct: 118 RVFMTSATKAFYKMVMNDFLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNGIRFQP 177
Query: 131 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 190
AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++ N +
Sbjct: 178 FNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAESTNGIREL 236
Query: 191 PPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
R++R +F + ++ GG L+PV + GR ELLLILE+YW H + PIY+ +
Sbjct: 237 ESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYAS 296
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLAS 307
++ + ++F+ M D + + R N F+ K++ L+ ++ GP +VLAS
Sbjct: 297 SLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GPCVVLAS 353
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 354 PGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 396
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 174/356 (48%), Gaps = 51/356 (14%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMY---------- 99
S +D +L+SH H +LPY M+ + VF +T+ +YR LL+ +
Sbjct: 58 SKVDILLISHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRW-LLSDFVRVTSIGGGG 116
Query: 100 DQYLSR-----------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142
D L+ RS R+ + +YH + + EGI + AGH+LG ++
Sbjct: 117 DSRLNSGNETATSSNLYTDDDLIRSFDRIE-TIDYHSTIEVEGIRFTAYHAGHVLGACMY 175
Query: 143 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQD 201
+ G V++ DY+R +++HL + +RP +LIT++ PR ++E
Sbjct: 176 FVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTATHEPRLEKEARMTK 234
Query: 202 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYV 257
I TL GG +L+PV + GR ELLLILE+YW + H++N ++F + ++ +
Sbjct: 235 IIHLTLLKGGRILMPVFALGRAQELLLILEEYWLQNEDLHNIN--VFFASSLARKCMAVY 292
Query: 258 KSFLEWMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEA 313
+++ M D+I ++ + N F KH+ L+ LD D GP +V+A+ L+
Sbjct: 293 QTYTNIMNDNIRHGVSSASGGKLNPFQFKHIKLI---RSLDKFQDIGPCVVVAAPGMLQN 349
Query: 314 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPL 365
G S ++ WA D KN V+ T GT+A+ L +P + VT+ RR+ +
Sbjct: 350 GVSRELLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQSLQNADVTIPRRMAI 405
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 180/406 (44%), Gaps = 69/406 (16%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHP--DTL---------- 66
+++ G ++D G + +D P ST+D +L+SHP DT
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHPVQDTTALYCHGQYCA 100
Query: 67 -------------------HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----L 103
H +LPY + + VF T P + + D
Sbjct: 101 CVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNT 160
Query: 104 SRRSVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
S T+ Y++ +YH + I + P+ AGH+LG ++ I G +
Sbjct: 161 SSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLN 220
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 209
+ + DY+R +++HL + V+ VLIT++ + + PR +RE +I+ L
Sbjct: 221 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 280
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW +H+ YPIY+ + ++ + ++++ M D+
Sbjct: 281 GGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDN 340
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D A + K++ L N D+ G ++LAS L+ G
Sbjct: 341 IKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGV 398
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
S ++ WA KN V+ T GT+A+ + + P ++ MSR
Sbjct: 399 SRELLERWAPSEKNGVIITGYSVEGTMAKQIMQE--PDQIQAVMSR 442
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 184/366 (50%), Gaps = 32/366 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A+ ID +L++H H GALP+ + +
Sbjct: 39 VMEFKGKKIMLDCGIHPGLQGLDALPFVDLIEANEIDLLLITHFHLDHSGALPWFLLKTK 98
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
+ +T+ +YR LL+ Y + +S ++ Y++ N+H
Sbjct: 99 FKGKCYMTHATKAIYRW-LLSDYIK-VSNIGTEQMLYTEADLEKSMDRIETINFHEEKDV 156
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G V+Y D++R++++HL + RP +LIT++
Sbjct: 157 GGIRFCAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPP-SRPEILITES 215
Query: 184 YNALH-NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H ++ ++ F ++ + GG L+PV + GR ELLLIL++YW H +
Sbjct: 216 TYGTHIHEKREERERRFTMLVNDIVNRGGRCLIPVFALGRAQELLLILDEYWGLHPELHD 275
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD- 299
PIY+ + ++ + ++++ M D I + + + +N F+ KH+T N +D+ D
Sbjct: 276 IPIYYASSLAKKCMAVYQTYINAMNDRIKR--QIAVNNPFVFKHIT---NLKSIDHFEDI 330
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
GP +++AS +E+G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 331 GPCVIMASPGVMESGLSRELFEMWCTDSKNGVIIAGYVVQGTLAKAILSE--PEDITTMT 388
Query: 360 SRRVPL 365
+++PL
Sbjct: 389 GQKLPL 394
>gi|255934198|ref|XP_002558380.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582999|emb|CAP81208.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 893
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 177/436 (40%), Gaps = 108/436 (24%)
Query: 8 TPLSGV---FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G ++ S L G L+D GW++ F+ L L K T+ +LL+H
Sbjct: 5 TPLLGAQSSYSRASQSILELDGGIKILVDVGWDEKFNTLDLAELEKHIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYD---------QYLSRRSVTR--- 110
H+GAL + + L P+++T PV G + D +L + SV+
Sbjct: 65 PAHIGALVHCCRTFPLFTQIPIYATNPVIAFGRTLLQDLYASAPLAATFLPKASVSEPGA 124
Query: 111 -----------------------------------------LTYSQNYHLSGKG-----E 124
L YSQ +
Sbjct: 125 SSAGSATVSGGDTEAAGSASRILLQSPTAEEISRYFSLIQPLKYSQPHQPLPSPFSPPLN 184
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 185 GLTLTAYNAGHTVGGTIWHIQHGLESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 244
Query: 173 FVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI T + L R++R ++ D I +L GG VL+P D++ RVLEL
Sbjct: 245 LRKPTALICSTTGGDKLAPSGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYA 304
Query: 230 LEDYWAEHS--------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 273
LE W + + +Y ++TI +S LEWM ++I + FE
Sbjct: 305 LEHSWRDAANGDKEDVLQGAGLYLAGKKVTNTIRLARSMLEWMDENIVREFEAAESADVT 364
Query: 274 -----------TSRDNA-FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDI 319
TS+ F KH+ ++ K L+ A GPK++LAS S++ GFS
Sbjct: 365 NGQRTGGQDKSTSKGGGPFTFKHLKIIERKKRLEKLLAEPGPKVILASDTSMDWGFSKHA 424
Query: 320 FVEWASDVKNLVLFTE 335
+ A NL+L TE
Sbjct: 425 LRQVAEGPNNLLLMTE 440
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 131/313 (41%), Gaps = 81/313 (25%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 509
MFP+ + D++GE I P+D + ED D AA +G+ EG P+KV
Sbjct: 565 MFPYVAPRKKGDEYGEFIRPEDLVSDGEDADVAAESEDEVEGQSFEG---------PAKV 615
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
V N T+ + + FID+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 616 VYNTQTITINARIAFIDFMGLHDKRSLEMLIPLIQPQKLILVGGMKEETSALAAECQKLL 675
Query: 570 CPH---------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK-------- 606
++TP E ID + D A+ V+LS L+ + ++
Sbjct: 676 TVKLGATVSDPAFDSAAIIFTPANREVIDASVDTNAWNVKLSNTLVRRLNWQHVRSLGVV 735
Query: 607 ------------KLGDYEIAW--------------VDAEVGKTENG---------MLSLL 631
++GD E + V E+G+ + +L L
Sbjct: 736 ALTAQLRGPEPAEIGDVETSGKKMKQLKDEAASSAVAPELGQADTKIIDKVEVYPLLDTL 795
Query: 632 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
P S A + + VGDL++ADL+ + S G EF G G L + V +RK
Sbjct: 796 PASMAAGTRSMARPLHVGDLRLADLRKLMQSAGHTAEFRGEGTLLIDKSVAVRK------ 849
Query: 688 KGGGSGTQQIVIE 700
SGT +I IE
Sbjct: 850 ----SGTGKIEIE 858
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 182/384 (47%), Gaps = 36/384 (9%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRLTYSQ---- 115
H H ALP+ ++ V+ T P + LL Y + ++ S Y++
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADF-YTESDLI 124
Query: 116 ---------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+YH +GI V AGH+LG ++ I + V+Y D++R +++HL
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDRHLK 184
Query: 167 GTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
ES + LIT++ + PR +RE F + ++ GG LLPV + GR
Sbjct: 185 AA--ESPGCKIDGLITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQ 242
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
ELLLILE++W ++ PIY+ + ++ + ++++ M + I K R N F
Sbjct: 243 ELLLILEEHWNSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK-LSLVR-NPFAF 300
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K+V L D+ +GP +++AS L++G S D+F W SD KN V+ GTL
Sbjct: 301 KYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTL 358
Query: 343 ARMLQADPPP------KAVKVTMS 360
A+ + ++P K +++ MS
Sbjct: 359 AKEILSEPKEIEALNGKKLRLNMS 382
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 40/366 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQ---------------YLSRRSVTRLTYSQ----NYHL 119
VF T P + + D Y +T T++Q +YH
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIIDSVRVGGASSNGGSHSVYTEADHLT--TFAQIEAIDYHT 157
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
+ I V P+ AGH+LG ++ I G + + DY+R ++HL + V+ VL
Sbjct: 158 THTISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDDRHLVSAEVPKGVKIDVL 217
Query: 180 ITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
IT++ + + PR +RE +++ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 218 ITESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALGRAQELLLILDEYWDKHP 277
Query: 239 --LNYPIYFL------------TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKH 284
PIY+ TYV S + + F E M ++ S R + K+
Sbjct: 278 EFQKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEAEANSTSGGRGGPWDFKY 337
Query: 285 VTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
+ L N D+ G ++LAS L+ G S + WA KN V+ T GT+A+
Sbjct: 338 IRSLKNLDRFDDV--GGCVILASPGMLQNGISRQLLERWAPSDKNGVIITGYSVEGTMAK 395
Query: 345 MLQADP 350
+ +P
Sbjct: 396 QIMQEP 401
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 42/335 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSV- 108
S +D +L+SH H +LPY M+Q VF +T+ +YR LL+ + + S
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQQTSFRGRVFMTHATKAIYRW-LLSDFVRVTSLSGSG 122
Query: 109 ---TRLTYSQN-------------------------YHLSGKGEGIVVAPHVAGHLLGGT 140
+ SQN YH + + EGI + AGH+LG
Sbjct: 123 DEGRSMNGSQNSGTTSANLYTDEDLMSSFDKIETIDYHSTMEIEGIRFTAYHAGHVLGAC 182
Query: 141 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-F 199
++ + G V++ DY+R +++HL + RP +LIT++ PR ++E
Sbjct: 183 MYFVEIGGLKVLFTGDYSREEDRHLKVAEVPP-TRPDILITESTFGTATHEPRLEKETRM 241
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSSTIDYV 257
I T+ GG +L+PV + GR ELLLILE+YW+ E N IY+ + ++ +
Sbjct: 242 MKNIHSTILKGGRILMPVFALGRAQELLLILEEYWSLNEDIQNVNIYYASNLARKCMAVY 301
Query: 258 KSFLEWMGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGF 315
+++ M + I S +S + N F KH+ + +D D GP +V+AS L++G
Sbjct: 302 QTYTSIMNEKIRLSASSSEKTNPFQFKHIKSI---KSIDKIQDMGPCVVVASPGMLQSGV 358
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S + WA D KN V+ T GT+A+ L A+P
Sbjct: 359 SRQLLERWAPDPKNAVILTGYSVEGTMAKELLAEP 393
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 31/318 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+DA+L++H H AL Y ++ V+ T P + M D S +
Sbjct: 57 STVDAILITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMGSSTS 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLDMTMSLASIIPVSAHQLITICPGVSFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL L VRP VLI ++ + + R+++E F + + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAELPP-VRPDVLIVESTYGVQSLEGREEKEQRFTNLVHSVIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++I F
Sbjct: 236 LPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNNNIRSRF 295
Query: 273 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
RDN F+ K + A P +VLAS ++ G S ++F WA D +N ++
Sbjct: 296 -AKRDNPFVFKCKKI---------AEGPPCVVLASPGFMQVGPSRELFELWAPDARNGLI 345
Query: 333 FTERGQFGTLARMLQADP 350
T GTLAR + +P
Sbjct: 346 ITGYSIEGTLARDIMTEP 363
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 182/362 (50%), Gaps = 32/362 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ V PL + L +++G ++DCG +ND+ D S + ID
Sbjct: 1 MHVIPLGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRSVTRLTYSQ- 115
+++SH H GALPY + LG P++ T P + + + D + ++R++ ++TY++
Sbjct: 61 IIISHFHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLEDTRKIARKNNDKMTYNKE 120
Query: 116 ------------NYHLSGKGE-GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
N + + + + ++ P+ AGH+LG ++ + E ++Y DYN +
Sbjct: 121 DIENCMKKVIPINMNETYEHDVDFIIKPYPAGHVLGAAMFYVKVGCESLVYTGDYNTTPD 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 221
+HL G ++ +RP + IT++ + R+ +E F +I + ++ GG VL+P + G
Sbjct: 181 RHLGGAWIDC-LRPDLFITESTYGSTIRDCRKAKEREFLSSIYECVKNGGKVLIPTFALG 239
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R E+ L+++ YW + +L+ P+YF ++ + ++ + ++I K + N F
Sbjct: 240 RAQEMCLLIDSYWEKMNLSVPVYFTAGMAERANQIYRLYINYTNETIRK--KILERNLFE 297
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQ 338
K++ L +K +D P GP ++LAS L +G S ++F++ D N+++ + RG
Sbjct: 298 YKYIKSL-DKGVID-LP-GPMVILASPGMLHSGNSLNLFLKICHDKNNMIVIPGYCVRGT 354
Query: 339 FG 340
G
Sbjct: 355 VG 356
>gi|403216796|emb|CCK71292.1| hypothetical protein KNAG_0G02340 [Kazachstania naganishii CBS
8797]
Length = 823
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 174/795 (21%), Positives = 327/795 (41%), Gaps = 153/795 (19%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVASTIDAVLLSHPDTLHLGA--LPY 73
L+ D L+D GW P L+ + S + + +D ++LS P LGA L Y
Sbjct: 19 LIKFDNVTILLDPGWF----PGLVSVDDTVKYWSNIIADVDIIILSQPTKECLGAYSLLY 74
Query: 74 A--MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRL 111
+ V++T P+ LG + D Y S+ + L
Sbjct: 75 VNFLSHFISRIEVYATLPIANLGRVATIDLYASQGVIGPYLSNIMDVDDVEKSFDCIKTL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L K EG+ + +G GG++W I+ E ++Y +N K LN
Sbjct: 135 KYSQVVDLRYKFEGLTFVAYNSGSAPGGSIWCISTYVEKLVYVKRWNHTKNNLLNAASIW 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G + + +P+ +IT +P R++ + F+D ++++L++ G++L+PVD G
Sbjct: 195 DSGGKPISALSKPSAIITTFDKLGSTKPLRRRTKEFRDILTRSLQSSGSLLIPVDIGGDF 254
Query: 224 LEL------LLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
L L +L+ + N PI F++Y T+ Y KS LEW K++ET +D
Sbjct: 255 LNLFVSVQSILLTTHRGSRKYGNIPILFISYARGRTLTYAKSMLEWFSSESMKNWET-KD 313
Query: 278 NA--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
N F + + I+ +EL P G K+ L S +++A + I + ++ N++L
Sbjct: 314 NQSPFDIDNRLHFISPNELSKYP-GSKICLVS--NMDALLNETILKLYKTENLNVILTDG 370
Query: 336 RGQFGTL---------------ARMLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQT 378
T+ + +L+ D P + V + + + L + L ++ +
Sbjct: 371 FDSDATMISTMLQKWNKSCLDNSNILEGDMLPFSQTVPIKVWTKQALKSDALDTFKNQIE 430
Query: 379 RLKKEEALKASLVKEEESKASLGP--DNNLSGDPMVIDANN------------------- 417
+ + E + K + +K + ++ GP D ++G+ + N
Sbjct: 431 KRRLERSEKEATLKRDAKTSANGPAADAAMNGNGSLAVGQNGIGINDDDDDDDDDNDVLS 490
Query: 418 ANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVIN------PDD 471
A S G ++ + +D ++ + S MF F + DD+G +++ DD
Sbjct: 491 ARKSDGKNNSKGAKFMEPPVDLYLNEN-SKQKMFLFNPKREKRDDYGIMVDFSMFAPKDD 549
Query: 472 YIIKDEDMDQAAMHIGG---------------DDGKLDEGSASLILDA--KPSKVVSNEL 514
I++ D++ ++ + + K + LD +P K+ +
Sbjct: 550 EIVETSDVNISSKEVPSHVSKKRRKNSNKKDLEQPKAENFDNIDYLDTLNQPCKLRESTK 609
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
+Q+KC +I+ +D RS IL + P KL+L+ +++ K+VC
Sbjct: 610 EIQLKCSFTYINMTSLSDQRSTTVILPSLMPRKLILLAPASKQP--------KNVCSVFT 661
Query: 575 TPQIE-------ETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWVDAEVGKT--- 623
IE + +T+ + A + + +L + ++++ GD+ +A V + KT
Sbjct: 662 NKNIEVLLFLANKETKITTVIKALDISIDTELDQLLRWQRIGGDHTVAHVIGRLVKTTAT 721
Query: 624 ----------ENGMLSLLPISTPAPPHK-----SVLVGDLKMADLKPFLSSKGIQVEFAG 668
L L P+ P K ++ +GD+++ +LK L+ + EF G
Sbjct: 722 THTKGNNPDSTRSKLILKPLE--KNPLKISSGGTLSIGDVRLVELKRKLTEENHVAEFKG 779
Query: 669 -GALRCGEYVTIRKV 682
G L V +RKV
Sbjct: 780 EGTLIVDGQVAVRKV 794
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 40/378 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHL-------------SG 121
VF T + + D S + L Y++ HL +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 160 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 220 ESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEY 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E+S D A + + +
Sbjct: 280 QKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDFRFIR 339
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L LD D G ++LAS L+ G S ++ WA KN V+ T GT+A+
Sbjct: 340 SL---KSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQ 396
Query: 346 LQADPPPKAVKVTMSRRV 363
L + P+ ++ MSR +
Sbjct: 397 LLQE--PEQIQAVMSRNI 412
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 175/377 (46%), Gaps = 38/377 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHL-------------SG 121
VF T + + D S + L Y++ HL +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPTSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 160 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAEVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 220 ESTYGIASHIPRVEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEF 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E+S D A + K +
Sbjct: 280 QKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDFKFIR 339
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L + ++ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 340 SLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKHI 397
Query: 347 QADPPPKAVKVTMSRRV 363
+ P ++ MSR +
Sbjct: 398 MQE--PDTIQAVMSRNI 412
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 40/378 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHL-------------SG 121
VF T + + D S + L Y++ HL +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 160 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 220 ESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEY 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E+S D A + + +
Sbjct: 280 QKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDFRFIR 339
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L LD D G ++LAS L+ G S ++ WA KN V+ T GT+A+
Sbjct: 340 SL---KSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQ 396
Query: 346 LQADPPPKAVKVTMSRRV 363
L + P+ ++ MSR +
Sbjct: 397 LLQE--PEQIQAVMSRNI 412
>gi|156848581|ref|XP_001647172.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
gi|156117856|gb|EDO19314.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
Length = 821
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 180/791 (22%), Positives = 316/791 (39%), Gaps = 145/791 (18%)
Query: 22 LVSIDGFNFLIDCGWN----DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
+V D LID WN + D ++ S + +D +LLS P LGA Y+M
Sbjct: 19 IVRFDNVTILIDPSWNGKNVSYADS--IKYWSTIIPEVDIILLSQPSLECLGA--YSMLY 74
Query: 78 LGLSA------PVFSTEPVYRLGLLTMYDQYL--------------------SRRSVTRL 111
+ V++T PV LG +++ +QY S ++ +
Sbjct: 75 YNFVSHFVSRIDVYATLPVSNLGRISVIEQYACAGIIGPYETNEMDLEDIEKSFDNIKTV 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL- 170
YSQ L K +G+ + + +G GG++W + E ++YA +N K+ LNG L
Sbjct: 135 KYSQLVDLRSKFDGLTLVAYNSGVNAGGSIWCLLTYSEKLVYAPHWNHTKDTILNGAALL 194
Query: 171 -------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
+ ++P +IT R++ + F D++ + L G++++PVD G+
Sbjct: 195 DNTGKPLSTLMKPTAIITSLGRFGSALSFRKRSKNFNDSLKRGLSNNGSIMIPVDITGKF 254
Query: 224 LELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L + + ++ E+S + + + Y + Y +S LEW+ S+ K++E SRDN
Sbjct: 255 LDLFVQVHNFLYENSKSGSYNQTHVLLIAYFRGKVLTYARSMLEWLSSSLMKTWE-SRDN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
A F + +I+ SE+ N P G K+ S + +++ + S K VL T
Sbjct: 314 ASPFDIGSKFKVIDPSEISNFP-GSKVCFVSQVDI---LLNEVLTKLCSMNKTTVLMTST 369
Query: 337 GQFGTL-----------ARMLQADPPPKAVKVT------MSRRVPLVGEELIAYEEEQTR 379
T A+ LQ + T ++ PLV E+L EE R
Sbjct: 370 NTNNTQILETMYEKWEKAKTLQKLQDGSTISFTDTVLLKIASYKPLVNEQL---EEYNAR 426
Query: 380 LK-KEEALKAS---LVKEEESKASLGPDNNLSGDPMVIDANNANASA------DVVEPHG 429
LK + + K + L KE + +G G ++ N+ +++
Sbjct: 427 LKERRDKCKETVEILKKEAKLGTRIGDMYRSEGVGLIHSLNDEEDEDEDEEEENILNSTS 486
Query: 430 GRYR------DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI---------- 473
+ + DI I+ +TS MFPF ++ DD+G V++ + +I
Sbjct: 487 SQTKSFTVPVDIKIN---RSATSKHKMFPFQPGRTKIDDYGSVVDFNMFIPEELNTEIDT 543
Query: 474 -----IKDEDMDQAAMHIG-----------GDDGKLDEGSASLI-------LDAKPSKVV 510
+ +MD +G GD K +A I D P+
Sbjct: 544 NKRPSSRTNEMDDDPYDLGDAQKITKRSRRGDRSKSQNENAVSIDNIQYLEADNNPTIRT 603
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC 570
+E + C F++ + D RS I P K++L+ H+ K
Sbjct: 604 ISENRSHINCTFTFMNLDSLVDTRSATVIWPSFKPRKILLLAEKVPQNTHIISTLQKKDI 663
Query: 571 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEV--GKTENGM 627
V P E T+ + A + + +L + ++K+G + +A V + K +N
Sbjct: 664 EIVEMPSNVEQ-QFTTTIKALDISIDPELDQMLRWQKIGYGHTVAHVIGRLVKEKVQNSK 722
Query: 628 LS------------LLPISTPAPPHK--SVLVGDLKMADLKPFLSSKGIQVEFAG-GALR 672
L L P+ H S+ +GD+++A++K L+ + EF G G L
Sbjct: 723 LQDDDKEPLRTKMVLKPMENRTKVHTGISLSIGDIRLAEVKRKLTDQKHIAEFKGEGTLV 782
Query: 673 CGEYVTIRKVG 683
V+IRK+
Sbjct: 783 VDGQVSIRKIN 793
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 178/390 (45%), Gaps = 61/390 (15%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW-----NDHFDP------SLLQPLSKVAS 53
+ VTPL + LV I ++DCG +D P S L P+ + S
Sbjct: 3 ITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVV-INS 61
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------- 100
+D V++SH H GALPY +++G S P+ T P + + + D
Sbjct: 62 LVDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKVMEQKNILSK 121
Query: 101 ------------------QYLS----RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 138
Q+ S + + ++T Q H + GI + P+ AGH+LG
Sbjct: 122 FGSDINTESTDILKPVDPQHFSVGDVWKCMEKVTAIQ-LHQTISVNGINITPYYAGHVLG 180
Query: 139 GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE- 197
+++ + E ++Y DYN +++HL ++ P VL++++ A + +P R+ E
Sbjct: 181 ASMFHVEVGNESIVYTGDYNMVRDRHLGPASIKKLF-PDVLLSESTYATYIRPSRRSTER 239
Query: 198 MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYV 257
+F + + + L GG VL+PV + GR EL ++LE +W L YPIYF ++ + Y
Sbjct: 240 IFCEMVLQCLEKGGKVLIPVFAVGRAQELCILLEFFWRRMQLRYPIYFGGAMTEKSSLYY 299
Query: 258 KSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSH 317
+ + W +++ D+ F HV L ++S L N GP ++ A+ L AG S
Sbjct: 300 QLYTNWTNTALS-------DDLFSFPHV-LPYDRSVLTNT--GPAVLFATPGMLHAGLSL 349
Query: 318 DIFVEWASDVKNLVLFTERGQFGTL-ARML 346
F WA D NL + GTL AR++
Sbjct: 350 QAFKCWAPDPNNLTIIPGFCVAGTLGARII 379
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 157/352 (44%), Gaps = 55/352 (15%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N + DCG +ND D S + + +D
Sbjct: 4 IKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H G+LP+ + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKITVEKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG ++ + + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHVKVGSQSVVYTGDYNMTA 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
++HL ++R+ Q + + GG VL+PV + G
Sbjct: 184 DRHLGC--------------------------RERDFLQK-VHDCVEKGGKVLIPVFALG 216
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 217 RAQELCILLETFWDRMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFE 274
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+H+ ++S DN GP +V A+ L G S +F +WAS+ KN+V+
Sbjct: 275 FRHIKPF-DRSYTDNP--GPMVVFATPGMLHGGLSLHVFKKWASNEKNMVIM 323
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL+ + + N T+ VK + ++ + AD + I ++ P ++LVHG A+ +
Sbjct: 336 ILNGQRKIELENRQTIDVKLSVQYMSFSAHADAKGIMQLIKQCEPKNVMLVHGEAKKMDF 395
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
LKQ ++ + P E++
Sbjct: 396 LKQKIVQQFGVQCFMPPNGESV 417
>gi|255721479|ref|XP_002545674.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136163|gb|EER35716.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 870
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 157/653 (24%), Positives = 267/653 (40%), Gaps = 141/653 (21%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F L D WN D + + + ID +LLSH + L L + P+
Sbjct: 27 FKILTDPSWNG-VDVDSVLFIEQHLKEIDVILLSHSTEEFISGFMLLCIKFPNLMSTIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGE 124
+ST PV +LG ++ + Y + + L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVECYRASGILGPVDSAIIELDEVDNWFDKINLLKYQQSVNLFD--N 143
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 175
+V+ P+ AGH LGGT W ITK + VIYA +N K+ LN G+ S +R
Sbjct: 144 KVVITPYNAGHTLGGTFWLITKRVDRVIYAPAWNHSKDSFLNSASFISPSTGSPHLSLLR 203
Query: 176 PAVLI--TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
P + TD +A+ + +++ E F + TL GG V+LP +GR LEL +++++
Sbjct: 204 PTAFVTATDMGSAMSH---KKRTEKFLQLVDATLANGGAVVLPTSLSGRFLELFHLVDEH 260
Query: 234 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
+ P+YFL+Y + + Y S +WM ++++K +E F V LL++ +E
Sbjct: 261 LKGAPI--PVYFLSYSGTKVLSYASSMSDWMSNTLSKQWEELSTVPFNPSKVDLLLDPAE 318
Query: 294 LDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERG--------------- 337
L GPK+V S L+ G S + F +D V+ TE+
Sbjct: 319 LIKL-SGPKIVFCSGIDLKDGDISSEAFQYLCNDTSTTVILTEKSCIDSRNGLGAELYKE 377
Query: 338 --------QFGTLARMLQADPPPKAVKV-TMSRRVPLVGEELIAYEEEQTRLKKEE---- 384
G A+ A P + + + ++ V L G++L+ ++E+ + +KE+
Sbjct: 378 WYTSASNKSTGNGAKDGIAVPIDRTISLQNQTKEVDLTGQDLLNFQEKVAQKRKEKLMAK 437
Query: 385 --------ALKASLV--------------------KEEESKASLGPDNNLSGDPMVIDAN 416
L A V EE K L + +S + AN
Sbjct: 438 VRDQKNQNILSADTVDAEDSSDDDREDEDEEGHYSDEELKKLELAKNTAVSTSQVADLAN 497
Query: 417 NANASADVVEPHGGRYR--DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 474
+ D ++ + + D+ I + P ++ P FP + ++DD+GEVI+ +
Sbjct: 498 HEAFVMDTIKQNLEKNLPIDLKITHKLKPRQAMFPYFP-TAHREKFDDYGEVIDIKKF-Q 555
Query: 475 KDEDMDQAAMHIGGDDGKLDEGSASLI-------------------------------LD 503
K++++ + + + G K DE + I LD
Sbjct: 556 KNDEISHSKIIMEGKK-KFDEKRNNNIRNNRKGRNQNKQQANKLTPQEQVNQQVLQKYLD 614
Query: 504 A--KPSKVVSNEL---TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
KP K VS ++++C L F+D G D RS+ I+ + P L+L+
Sbjct: 615 TLFKPKKRVSTGAGGKNLKIRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 667
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 167/356 (46%), Gaps = 30/356 (8%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG ++DH D SL+ S + V+++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHCVIITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRSVTRLTYSQNYHLSGKGEGIVV---- 128
+ G + PV+ T P L L + Y + + R ++ ++ + I V
Sbjct: 80 TEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTADHIKQCLNKVIAVDLKQ 139
Query: 129 ----------APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ AGH+LG ++ ++Y DYN ++HL ++ ++ +
Sbjct: 140 TVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + + RE F + K + GG VL+P + GR EL L+L+DYW
Sbjct: 199 LITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQELCLLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF ++ Y K + W I +++ TSR NAF K+V ++S LD A
Sbjct: 259 NLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKETY-TSR-NAFDFKNVYTF-DRSLLD-A 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
P GP ++ A+ + GFS ++F WA NLV GT+ L + P K
Sbjct: 315 P-GPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLMSGKPSK 369
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 165/359 (45%), Gaps = 25/359 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ ++ G + ++DCG +H S L L S ID VL+
Sbjct: 38 VEILPIGSGGEVGRSCVILRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 95
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ----- 115
+H H GALPY +Q VF T + M D S + ++
Sbjct: 96 THFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVGASANDIVTNEWLQST 155
Query: 116 -------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
YH GI P AGH+LG ++ + G +Y D++R ++HL G
Sbjct: 156 IEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGA 215
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ S+ P +LI ++ N + R++R +F + ++ GG L+PV + GR ELL
Sbjct: 216 EVPSY-SPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELL 274
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
LILE+YW H + PIY+ + ++ + ++F+ M D + + R N F+ K++
Sbjct: 275 LILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYI 333
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
L+ ++ GP +VLAS L++G S ++F W D +N ++ GT+A+
Sbjct: 334 HSLMETRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAK 390
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 174/369 (47%), Gaps = 29/369 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVLL 60
+++TP+ L+ G + DCG + + + P + ID +L+
Sbjct: 36 LEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLV 95
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-GLL---------------TMYDQYLS 104
SH H A+PY + + VF T P + G+L ++D+
Sbjct: 96 SHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDL 155
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
RS+ ++ + Y + GI V AGH+LG ++ I G ++Y D++R++++H
Sbjct: 156 DRSLEKIEKVR-YRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRH 214
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L G V+ VLI ++ + PR +RE F ++ + + G L+PV + GR
Sbjct: 215 LMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRA 273
Query: 224 LELLLILEDYW-AEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL++YW A L++ PIY+ + ++ + ++++ M D + F+ S N F
Sbjct: 274 QELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS--NPFE 331
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
KH+ + D+ GP + +AS L++G S +F W SD +N ++ GT
Sbjct: 332 FKHIKNIKGIESFDDR--GPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGT 389
Query: 342 LARMLQADP 350
LA+ + ++P
Sbjct: 390 LAKHIMSEP 398
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 160/341 (46%), Gaps = 36/341 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T P + + D S S
Sbjct: 76 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSIRVGGASSDSK 135
Query: 109 TRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+ Y++ +YH + I + P+ AGH+LG ++ I G + +
Sbjct: 136 GQPVYTEADHLSTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTG 195
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVL 214
DY+R ++HL + V+ VLIT++ + PR +RE +I+ L GG VL
Sbjct: 196 DYSREDDRHLVSAEVPKGVKIDVLITESTYGIAAHVPRVEREQQLMKSITSILNRGGRVL 255
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
+PV + GR ELLLIL++YWA H PIY+ + ++ + ++++ M ++I + F
Sbjct: 256 MPVFALGRAQELLLILDEYWALHPEFQKIPIYYASNLARKCMLVYQTYVGAMNENIKRLF 315
Query: 273 -------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 320
E S D A + K++ L N D+ G ++LAS L+ G S ++
Sbjct: 316 RERMAEAEASSDTAAKGGPWDFKYIRSLKNLDRFDDV--GRCVMLASPGMLQNGVSRELL 373
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
WA KN V+ T GT+A+ + + P ++ MSR
Sbjct: 374 ERWAPSEKNGVVITGYSVEGTMAKQIMQE--PDQIQAIMSR 412
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 41/356 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D S S
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS GI + P+ AGH+LG ++KI G ++
Sbjct: 135 QRTTLYTERDHLSTLPLIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + S + VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITSILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H +PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSR---RVPLVGEE 369
WA +N V+ T GT+A+ L +P P KV+ RVP V +E
Sbjct: 373 LERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDE 428
>gi|219123319|ref|XP_002181974.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406575|gb|EEC46514.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 1001
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 161/338 (47%), Gaps = 56/338 (16%)
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAP------VFSTEPVYRLGLLTMYDQYLSRR--- 106
D ++L+ LG LP +Q+ + P +++T P ++G +T+YDQ+ +
Sbjct: 72 DCLVLTDSTLQALGGLPMYYRQMKDTQPDLPLPPIYATFPTVKMGQMTLYDQHAAISLDG 131
Query: 107 ---------------SVTRLTYSQNYHL-----SGKGEGIVVAPHVAGHLLGGTVWKITK 146
SV + YSQ + + K + V H AGH++GG + + +
Sbjct: 132 GQPPYTLRDLDDVFASVHAIKYSQAMRVYPRDTNTKHASLSVTAHRAGHVVGGAFYVVQR 191
Query: 147 --DGEDVIYAVDYNRRKEKHLNG-TVLESFVRPAVLITD--------AYNALHNQ----- 190
D V+ Y+ KE HL+ T+L+ P VL+T A + + N
Sbjct: 192 LRDETVVVLTTQYHVAKELHLDSSTILKHATTPDVLVTHPGGPALRLARSNVQNTVTPLV 251
Query: 191 PPR---QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYF 245
PP+ Q + + + LR GNVLLP D +GRVLE+LL L ++W H L +Y + +
Sbjct: 252 PPQMVTQVERVLVETVLSVLRRDGNVLLPCDVSGRVLEVLLALHNHWDRHRLAASYHLIW 311
Query: 246 LTYVSSSTIDYVKSFLEWMGDSITKSFETSRD-NAFLLKHVTLLINKSELDN----APDG 300
++ + +D+ +S LEWMG + F+ + L HV + N EL+ P+
Sbjct: 312 CGPMAPNVLDFARSQLEWMGTKLGHVFDAQAGPHPLTLPHVHVCTNTRELEKFLAENPN- 370
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
P V+AS SLE G + D+ + WA +V N +LFT+ Q
Sbjct: 371 PACVVASGLSLEGGPARDLLLSWADNVDNAILFTDASQ 408
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 25/236 (10%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K+ + V+V + +I EGR + R+ + + + P +++++ G+++ + ++
Sbjct: 771 PTKITTVARKVEVLAEINYIPLEGRVEARAARQSVRALQPREVIVLGGASQGSGDNPENL 830
Query: 566 LKHVC-------------PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 612
V V P E I++ AY V+L + + ++ D
Sbjct: 831 TDEVTVLAKATKAFTQGMHDVRMPSDGEVIELKVGHAAYAVRLIDTPYHPLKEREAADLS 890
Query: 613 ---IAWVDAEVGK--TENGMLSLLPISTPAPPHKSVLV--GDLKMADLKPFLSSKGIQVE 665
I +A+VG+ +G + L P + A S+ + GD+ + DL+ L +KG++ E
Sbjct: 891 HEPIESFEAKVGQKVAADGSIVLAPKDSGANDDPSIYLSDGDVLLTDLRAELIAKGMKAE 950
Query: 666 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
++ A + V KV QK SG Q+ +EGPLCED+Y +R + QF ++
Sbjct: 951 YSTKA-GVAQLVVNGKV--LVQKAQDSG--QLEVEGPLCEDFYLVRGVVCGQFTVV 1001
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 159/350 (45%), Gaps = 63/350 (18%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSA------------------------------ 82
ST+DA+L++H H ALPY M+++ L
Sbjct: 77 STVDAILITHFHVDHAAALPYIMEKVRLMVLCWELTSDELPGRKRQGVHDARDACHLRTD 136
Query: 83 -----PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 137
P + E RL D S + + Y Q+ ++SG G+ P+ AGH+L
Sbjct: 137 DDGHRPHQNAEAAGRL--YNEADVQASWENTIAVDYHQDINISG---GLRFTPYHAGHVL 191
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALHNQPPRQQ 195
G +++ I G V+Y DY+R +++HL V+ V+P V+I ++ +H P R+
Sbjct: 192 GASMFLIEIAGLKVLYTGDYSREEDRHL---VIAEVPPVKPDVMICESTFGVHTLPDRKD 248
Query: 196 RE-------------MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
+E + +S +R GG VL+P+ S G EL L+L+DYW +H
Sbjct: 249 KEEQFTSELISRATQLTSALVSNIVRRGGKVLMPIPSFGNGQELALLLDDYWNDHPELQG 308
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIYF + + + K ++ M +I F RDN F K+V L + LD+
Sbjct: 309 VPIYFASGLFQRGMRVYKKYVHTMNANIRSRF-ARRDNPFDFKYVKWLKDPKRLDHKQ-- 365
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
P +V+AS + G S ++ EWA D KN V+ T GT+AR L +P
Sbjct: 366 PCVVMASAQFMSFGLSRELLEEWAPDPKNGVIVTGYSIEGTMARTLLGEP 415
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 159/338 (47%), Gaps = 38/338 (11%)
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRL 111
D H D H +LPY + + VF T P + + D S T+
Sbjct: 106 DFAFFFHID--HAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQP 163
Query: 112 TYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
Y++ +YH + I + P+ AGH+LG ++ I G ++ + DY+
Sbjct: 164 VYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYS 223
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 217
R +++HL + V+ VLIT++ + + PR +RE +I+ L GG VL+PV
Sbjct: 224 REQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPV 283
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF--- 272
+ GR ELLLIL++YW +H+ YPIY+ + ++ + ++++ M D+I + F
Sbjct: 284 FALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRER 343
Query: 273 ----ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
E S D A + K++ L N D+ G ++LAS L+ G S ++ W
Sbjct: 344 MAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERW 401
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
A KN V+ T GT+A+ + + P ++ MSR
Sbjct: 402 APSEKNGVIITGYSVEGTMAKQIMQE--PDQIQAVMSR 437
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 179/372 (48%), Gaps = 34/372 (9%)
Query: 3 TSVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWND-HFDPSLLQPLSKV-ASTIDAVL 59
++V PL G NE S L+S + N + DCG + H + L L V ST+DA
Sbjct: 29 NKIKVKPL-GAGNEVGRSCILISYNNKNIMFDCGVHSAHTGIASLPFLDTVDLSTVDACF 87
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRSVTRL------ 111
++H H LPY ++ VF T P + +L Y + ++ S
Sbjct: 88 ITHFHLDHAAGLPYLTEKTNFKGKVFMTHPTKAILRWMLNDYVRIINASSDVDFYTEKDL 147
Query: 112 --TYSQ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
Y++ +YH EGI V AGH+LG ++ I + ++Y DY+R +++HL
Sbjct: 148 NNCYNKIIPIDYHQEINIEGIKVIGLNAGHVLGAAMFLIKIEDSVMLYTGDYSREEDRHL 207
Query: 166 NGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
ES + LIT++ + R +RE F I+K + GG LLPV + GR
Sbjct: 208 KAA--ESPNCKIHALITESTYGVQCHLSRDERESRFTSTITKIVTRGGRCLLPVFALGRA 265
Query: 224 LELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
ELLLIL+++W+ HS+ PIY+ + ++ I ++++ M D I KS + N
Sbjct: 266 QELLLILDEHWSNNPQLHSI--PIYYASALAKKCIGIYQTYINMMNDHIKKS--SLIKNP 321
Query: 280 FLLKHVTLLINKSELDNAPDG-PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F ++V N +D D P +++AS L++G S ++F +W D +N V+
Sbjct: 322 FAFQYVK---NLKSIDFFEDNSPCVIMASPGMLQSGLSRELFEKWCGDRRNGVIIPGYSV 378
Query: 339 FGTLARMLQADP 350
GTLA+ + +P
Sbjct: 379 DGTLAKEILNEP 390
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 158/363 (43%), Gaps = 41/363 (11%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRLT 112
PY + G P++ T P L + D QY + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 173 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 230
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 231 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 351 PPK 353
P +
Sbjct: 370 PTR 372
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 199/431 (46%), Gaps = 55/431 (12%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
+TPL G NE S + +S G L DCG + D DPS
Sbjct: 26 ITPL-GAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPS---------- 74
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------TM 98
TID +L++H H +LPY +++ VF +T+ +Y+L LL +
Sbjct: 75 TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLLDFVKVSKVSVEDML 134
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGI-VVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
YD+ RS+ ++ ++H + + GI + + +LG ++ + G V+Y DY
Sbjct: 135 YDEQDISRSMDKIEVI-DFHQTVEVNGIRFLWCXLIRKMLGAAMFMVDIAGVRVLYTGDY 193
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
+R +++HL + F +I Y +QP + + F D + T+ GG VL+P
Sbjct: 194 SREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHSTISQGGRVLIPA 253
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I + +
Sbjct: 254 FALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLSMNDRI----QNA 309
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
+ N F K+++ L + + GP +V+AS + L++G S +F W S+ + +T
Sbjct: 310 KSNPFRFKYISPLKSIEVFKDV--GPSVVMASPSGLQSGLSRQLFEMWCSEKHVSLHWTS 367
Query: 336 RGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
L+ M+ A+ + ++R VP V E A + E+ +KK E + +L+
Sbjct: 368 ----DPLSDMVSDS--VVALILNINREVPKVIVESEAVKTEEENVKKAEKVIHALLVSLF 421
Query: 396 SKASLGPDNNL 406
LG + L
Sbjct: 422 GDVKLGENGKL 432
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 28/351 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMK 76
++++ GF ++DCG H S L L V S +D ++H H GALP+ +
Sbjct: 40 HIITYKGFTIMLDCG--THPAKSGLAQLPYVDEVDLSQVDFCFVTHFHVDHCGALPWLLS 97
Query: 77 QLGLSAPVF---STEPVY--------RLGLLTMYDQYLSRRSV---TRLTYSQNYHLSGK 122
+ VF +T+ VY R+ T +Q S + + + + ++ +
Sbjct: 98 KTPFKGRVFMTHATKAVYQWMLTDYVRINATTDDNQLFSDKDIENTMKRIETVDFEQTVM 157
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD 182
G+ P+ AGH+LG +++I G ++Y D++R +++HL + ++P +LI +
Sbjct: 158 LRGLSFTPYSAGHVLGACMFEIDIAGVKLLYTGDFSRDEDRHLMAASIPP-IKPDILIAE 216
Query: 183 AYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--L 239
+ RQ RE F + ++ GG L+PV + GR ELLLIL++YW +H
Sbjct: 217 STLGDLEHENRQDRERRFTKEVHTIVQRGGRCLIPVFALGRAQELLLILDEYWQQHPELH 276
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
N PIY+ + ++ + K+F+ M I + + S N F + + L E D+
Sbjct: 277 NVPIYYASALAKRCMGVFKAFVNMMNPKIQQQMKIS--NPFQFQFIHNLRKLDEFDD--H 332
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
G +VLA+ L+ G S ++F WA + N V+ GTLA L P
Sbjct: 333 GSSVVLATPGMLQNGLSRELFERWAPNRHNGVILAGYHVEGTLAHELLKQP 383
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 41/356 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D S S
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS GI + P+ AGH+LG ++KI G ++
Sbjct: 135 QRTTLYTERDHLSTLPMIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + S + VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H +PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSR---RVPLVGEE 369
WA +N V+ T GT+A+ L +P P KV+ RVP V +E
Sbjct: 373 LERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDE 428
>gi|367015916|ref|XP_003682457.1| hypothetical protein TDEL_0F04350 [Torulaspora delbrueckii]
gi|359750119|emb|CCE93246.1| hypothetical protein TDEL_0F04350 [Torulaspora delbrueckii]
Length = 835
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 189/827 (22%), Positives = 334/827 (40%), Gaps = 157/827 (18%)
Query: 22 LVSIDGFNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------- 70
++ D L+D W+ ++ S+ + S++ +D +LLS P LGA
Sbjct: 19 IIRFDNVTILVDPSWHSSKISYENSV-RFWSEIIPEVDIILLSQPSVETLGAYGSLYHNF 77
Query: 71 LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTR 110
L + + ++ V++T PV LG +T D Y S+ +
Sbjct: 78 LSHFISRI----EVYATLPVSNLGRVTTIDYYTSKGLIGPFKANQIDLRDVEFAFDHIQT 133
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
L YSQ L K +G+ + + AG GG VW I+ E ++YA +N + LNG+ L
Sbjct: 134 LKYSQLADLRSKYDGLTLIAYSAGVSPGGCVWCISTYFEKLVYAFRWNHTRNTILNGSSL 193
Query: 171 --------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 222
+ RP+ +IT ++P ++ ++F+DA+ + L + G+VL+P + G
Sbjct: 194 LDKTGKPLATLARPSAVITKLDKFGSSKPHGKRVKVFKDALKRVLSSSGSVLIPAEIGGN 253
Query: 223 VLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
L+L +++ D+ E S P+ + Y + Y +S LEW+ S+ K +E SRD
Sbjct: 254 FLDLFVLVHDFLYESSKSRLFAQVPVLLVAYSRGRVLTYARSMLEWLSSSLLKIWE-SRD 312
Query: 278 NA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWAS-------- 325
N F L +I ++L GPK+ S ++ S E +
Sbjct: 313 NRSPFDLGSRFHVIAPTDLTKY-SGPKICFVSQVETLVDEVISRLCQTERTTIILTSSDN 371
Query: 326 -DVKNLVLFTERGQFGTLARML---QADPPPKAVKVTMSRRVPLVGEELIAYEEEQT-RL 380
D + L + + R Q+ +++ + + P+ GEEL Y T R
Sbjct: 372 DDTRTLSVLHKNWDLAQKQRGAEEGQSISYSESLTLKTVQTKPMTGEELEQYVAGITERK 431
Query: 381 KKEEALKASLVKEEE-----SKASLGPDNNLSGDPMVIDANNANASA--------DVVEP 427
K + L+ SL K+ + S+ G D+ SG+ + D+++
Sbjct: 432 TKRKELEESLHKDVKLAGKISRRLDGKDD--SGNMREDGQDPEEDDDEDEDENLLDILKE 489
Query: 428 H-----GGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFGEVINPDDYIIK-DEDMD 480
G DI +D + P++ MFPF + DD+G ++ I DE+MD
Sbjct: 490 KSSTSTGQTAIDIPVDYLIQPTSQPKHKMFPFQPAKIKSDDYGTFVDFSSLIQNDDEEMD 549
Query: 481 QAAMHIG--------------------------GDDGKLDEGSASL----ILDAKPSKVV 510
Q GK + S LD + +
Sbjct: 550 QKKSSAADEAEEDEDPYDLSENRRETSKKPRREAKKGKGKNPAESFDNIDYLDPLQNPMN 609
Query: 511 SNELT--VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH 568
+E T V +KC L++I+ E D RS IL + P KL+L+ K
Sbjct: 610 RSESTSKVTIKCSLVYINLESLVDQRSASIILPALKPRKLLLLAPPECQNAQSVSTMQKR 669
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAE-------- 619
V P I + I+ + + + + + L + + ++K+G+ Y +A V
Sbjct: 670 DVDIVEMP-INKAIEFITTIKSLDISIDPDLEALLKWQKIGESYTVAHVIGRLVKEKPQM 728
Query: 620 -----VGKTENGM-------LSLLPISTPAPPH--KSVLVGDLKMADLKPFLSSKGIQVE 665
VGK ++ + L L P+ + H S+ +GD+++A+LK L+ + + E
Sbjct: 729 AKSKGVGKPQSKLNQQARSKLVLKPLQSTFRAHVGGSLSIGDIRLAELKKRLTERNHRAE 788
Query: 666 FAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 711
F G G L V +RK+ + + +++G E +Y ++
Sbjct: 789 FKGEGTLVVDGQVAVRKISDS----------ETIVDGSPSELFYDVK 825
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 158/363 (43%), Gaps = 41/363 (11%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRLT 112
PY + G P++ T P L + D QY + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 173 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 230
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 231 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 351 PPK 353
P +
Sbjct: 370 PTR 372
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 158/363 (43%), Gaps = 41/363 (11%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRLT 112
PY + G P++ T P L + D QY + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 173 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 230
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 231 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 351 PPK 353
P +
Sbjct: 370 PTR 372
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 166/344 (48%), Gaps = 34/344 (9%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
L+DCG + + P + S IDA+L++H H ALP+ ++ V+ T
Sbjct: 33 LLDCGVHPAYTGVSSLPFLDLVDLSKIDAILVTHFHLDHAAALPFLTEKTEFKGKVYMTH 92
Query: 89 PVYRL--GLLTMYDQYLSRRSVTRLTYSQN------------YHLSGKGEGIVVAPHVAG 134
P + LL Y + ++ S Q+ YH EGI V AG
Sbjct: 93 PTKAILKWLLNDYIRVINSSSEQDFYTEQDLQSCYDKIIPIDYHQQINIEGIKVTALNAG 152
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-----GTVLESFVRPAVLITDAYNALHN 189
H+LG ++ + + ++Y D++R +++HL G L++ LIT++ +
Sbjct: 153 HVLGAAMFLLEIEKSKILYTGDFSREEDRHLKAAESPGCCLDA------LITESTYGVQC 206
Query: 190 QPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYPIYFL 246
PR +RE F +S + GG LLPV + GR ELLLILE++W E H PIY+
Sbjct: 207 HLPRYEREARFTSIVSHVVLRGGRCLLPVFALGRAQELLLILEEHWDENPHLKGIPIYYA 266
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
+ ++ + ++++ M + I K+ + N F ++V + + + GP +++A
Sbjct: 267 SALAQKCMSVYQTYINMMNERIQKA--SLVKNPFDFRNVESIKDIQSFKDT--GPCVMMA 322
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S L++GFS ++F +W S+ KN V+ GTLA+ + ++P
Sbjct: 323 SPGMLQSGFSRELFEKWCSNEKNGVVIPGYCVEGTLAKEILSEP 366
>gi|429966183|gb|ELA48180.1| hypothetical protein VCUG_00418 [Vavraia culicis 'floridensis']
Length = 647
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 145/678 (21%), Positives = 283/678 (41%), Gaps = 118/678 (17%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
N S L+ ID + LI+ G + L L ++ ID +L+ H + ++G LP
Sbjct: 18 NVFSQLLEIDTYKILINIGSDPFLKVDYLAELERIIDDIDCILICHAELKYIGGLP---- 73
Query: 77 QLG--LSAPVFSTEPVYRLGLLTM-------------------YDQYLSRRSVTRLTYSQ 115
LG ++ + PV+ LG L + +++ +R SV + YSQ
Sbjct: 74 SLGERFKGKLYCSVPVHTLGRLMVSEVNRNMEVFGAKRYEEDDIEEWFARISVVK--YSQ 131
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
L + + H +GH LGG +W+I+KD E+V+ A D N RKE H++G + + +
Sbjct: 132 PIELGA----LRLTAHNSGHSLGGCLWQISKDNENVVVAFDINHRKENHVDGLEINNLRK 187
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
+ + + + P Q++ + +S + GN ++ + + R LE+ IL+++
Sbjct: 188 NFIFLMNC--EFVGEVPVQRKSRDSEFMSFLAQNHGNKIVILCTFSRYLEICSILDEFLE 245
Query: 236 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295
N FL++ S++ + K LEW GD K F ++ N F K++ SE+D
Sbjct: 246 RK--NKRCTFLSFNSNTLYESFKIMLEWAGDIALKKFTNTKVNPFAFKNIRFKDLYSEVD 303
Query: 296 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAV 355
D + + +L + F++ I + + LV+F + + T+ R+ D P V
Sbjct: 304 KKTD---IFVILDENLCSPFTNRIVYDLNDERNVLVVFNDEHE-RTITRLDYMDVPEFKV 359
Query: 356 KVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDA 415
+ ++V + ++ + K+ E S+ +E+
Sbjct: 360 EKESDKQVD---------KSQRAQHKRNEPNPESVEREK--------------------- 389
Query: 416 NNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIK 475
+V GG D +P FP D +GE + ++IK
Sbjct: 390 ------MHIVVRSGGPEDD-------------SPTFPVRNKQRPCDSYGEFFDKKLFLIK 430
Query: 476 DEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRS 535
E+ D+ + +++ S + + + N+L + + ++ G +DG S
Sbjct: 431 AEEKDKEVI--------VEKPSVKRVQET----ISMNKLPFSCRIRTKYFNFNGLSDGNS 478
Query: 536 IKTILSHVAPLKLVLVHGSAEATEHL-----KQHCLKHVCPHVYTPQIEETIDVTSDLCA 590
+KTIL + KL+L+ + + H +C V T Q+ +++++D+
Sbjct: 479 VKTILESLEIEKLILLGKNKMFVDFFYYLCHYNHNFGEIC--VLTDQV---LNLSTDITT 533
Query: 591 YKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKM 650
KV L + + F+++ ++A + G + + P S+ +G +KM
Sbjct: 534 TKVNLEDNFLQKANFREINGKQMA--------SFKGCIKDNVLYYKEPLKSSLCLGSVKM 585
Query: 651 ADLKPFLSSKGIQVEFAG 668
+LK L ++++ A
Sbjct: 586 TELKKQLLDNNLRIKKAN 603
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 44/356 (12%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V + G + DCG + F + LL + IDA++++H H+GALPY
Sbjct: 17 IVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDALVITHFHIDHIGALPYF 76
Query: 75 MKQLGLSAPVFSTEPVY----------------RLGLLTMYDQYLSRRSVTRLTYSQNYH 118
+ G PV T P + R G + Y + R + R+T +
Sbjct: 77 TEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNADRPGEVLPYTEQHVRDCLRRVTAVDLHQ 136
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES------ 172
+ G+ H AGH+LG + +T +Y D+N ++HL L +
Sbjct: 137 VVAVAPGLSFTFHYAGHVLGAAMVTMTAGHLTALYTGDFNSAPDRHLGSAELAAGGAGPA 196
Query: 173 ---FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
P VLI++A A L + ++R++ Q A+ T+ AGG VL+P + GR ELL
Sbjct: 197 GCLMREPDVLISEATYAASLRDSKRGRERDLLQ-AVEDTVAAGGKVLIPTFAMGRAQELL 255
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
++L D W L PIYF + ++S + Y + L W ++ K+ E F T
Sbjct: 256 MLLADCWRRKGLTVPIYFSSAMASRALTYYQLLLNWTNANVRKAVEADVYGMFR----TR 311
Query: 288 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 340
++S L AP GP ++ AS ++ +G S + F WA +NLV+ + RG++G
Sbjct: 312 PWDRSLL-QAP-GPAVLFASPGNITSGVSLEAFRAWAGSSRNLVVLAGYQVRGEWG 365
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 152/336 (45%), Gaps = 40/336 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS----- 107
ST+D +L++H H +LPY + + + VF T P + T D +
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLSKTNFAGKVFMTHPTKAIYKWTTQDAVRVHNTHAPAS 135
Query: 108 --------VTRLTYSQN------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
V++L Q+ +H + GI P+ AGH+LG ++ I
Sbjct: 136 STSGTDGYVSQLYTEQDILSTLPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIA 195
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKT 206
G +V++ DY+R ++HL + V+ LIT++ + + PRQ+RE +I+
Sbjct: 196 GLNVLFTGDYSRENDRHLIPAAVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTI 255
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
L GG VL+P + G ELLLILED+W H +PIY+ + ++ + +++++ M
Sbjct: 256 LNRGGRVLMPTTAVGNTQELLLILEDHWHRHEEYRRFPIYYASGLARKVMVVYQTYVDDM 315
Query: 265 GDSITKSFETSRDNAFL----------LKHVTLLINKSELDNAPDGPKLVLASMASLEAG 314
D I F+ S + + V L D+ G +VLAS L+ G
Sbjct: 316 NDRIKAKFQASATGPSVGDGGTAGPWDFQFVRALKGVDRFDDV--GGSVVLASPGMLQNG 373
Query: 315 FSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S + WA D KN V+ T GT+A+ + +P
Sbjct: 374 PSRALLERWAPDSKNGVIITGYSVEGTMAKNILLEP 409
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 161/342 (47%), Gaps = 37/342 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D + S
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 133
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++N HLS I + P AGH+LG ++ ++ G ++++
Sbjct: 134 QRTTLYTENDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLVSIAGLNILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLIT++ + PPR +RE AI+ L GG V
Sbjct: 194 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKAITGVLNRGGRV 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLILE+YW H PIY++ + + ++++ M D+I +
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPDLQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 272 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + + V L + D+ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEASGDKSASAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 371
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
WA + +N V+ T GT+A+ L + P + MSR
Sbjct: 372 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PDQIPAVMSR 411
>gi|255718601|ref|XP_002555581.1| KLTH0G12606p [Lachancea thermotolerans]
gi|238936965|emb|CAR25144.1| KLTH0G12606p [Lachancea thermotolerans CBS 6340]
Length = 816
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 185/814 (22%), Positives = 330/814 (40%), Gaps = 148/814 (18%)
Query: 22 LVSIDGFNFLIDCGWNDH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM---K 76
++ + ++D W + + ++ + D +LLS P LGA YAM K
Sbjct: 19 VLRFENVTIMVDPAWEGRGSWSSEQIDFWGELVAQADIILLSQPTAEFLGA--YAMLYFK 76
Query: 77 QLG---LSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTY 113
LG VF+T PV LG +T D Y S+ V + +
Sbjct: 77 FLGHFKTRIAVFATLPVANLGRVTTLDLYASQGLVGPVQTNALDLNDIEEAFDHVITVKH 136
Query: 114 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN------- 166
SQ L K +G+ V P+ +G+ GG+++ IT + +IYA +N K+ LN
Sbjct: 137 SQILDLKSKYDGLTVIPYSSGYAPGGSIFCITTYSDKIIYAPRWNHTKDTILNSAAVLNS 196
Query: 167 -GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLE 225
G S +RP+ ++T + P +++ F++ + + L G ++P D G+ L+
Sbjct: 197 SGKPTPSMMRPSAVVTTTARIGSSVPYKKRAARFKELLREALPKNGTAIIPTDIGGKFLD 256
Query: 226 LLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA- 279
LL+++ DY E N + ++Y T+ Y +S LEW+ SI K +E + +
Sbjct: 257 LLVLVHDYLYEMKQNRNQSDVSVLLVSYSRGRTLTYARSMLEWLSPSIVKVWEGRNNRSP 316
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F +++ EL G K+ S + + S + V+ TE
Sbjct: 317 FDFGSRLKIVSPEELKRY-SGSKICFVSRVD---RLINAVVQTLCSSERTTVILTEPLVL 372
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESK- 397
+ + + A K + ++ + ++Y E + K E LK+ ++E ESK
Sbjct: 373 QSESSKVLAAMHSKWARANKAQDSRALNNRHVSYSENVAIQTAKTEPLKSQDLQEFESKI 432
Query: 398 -----------ASLGPDNNLSGD--------------------PMVIDANNANASADVVE 426
+ L + + GD P I A N +S V +
Sbjct: 433 EIRRREHKDLLSKLETETAVVGDMSSNGGMLDVAEEEEDEDDIPDFITAVNRKSSRSVTK 492
Query: 427 PHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--EDMDQ--- 481
P DI I P MFPF+ + DD+G+V++ +I KD E+ D+
Sbjct: 493 PIEIPV-DIHIQSDAQPRHK---MFPFHAMKVKKDDYGDVVDFTQFIPKDQLENSDKRNS 548
Query: 482 -AAMHIGGDDGKLDEGSASLI-----------------------LDA--KPSKVVSNELT 515
+A+ D +L+ S+ LD+ KP + + +
Sbjct: 549 SSALDEEDDPYELELASSKPTKKRRGGGATNSKSKEENFDDVSYLDSLNKPYRRILSSSV 608
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV----HGSAEATEHLKQHCLKHVCP 571
+KC + ID D RS+ I + P ++L+ +A A + L L +
Sbjct: 609 ATLKCYVAAIDLSSLVDQRSLSVIWPSLKPHNVLLMPPQDSQNAAALKALSGKNLDVISM 668
Query: 572 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWV------DA-EVGKT 623
+P +T+ + ++ V + L ++ ++ + D Y IA V DA +V +
Sbjct: 669 SFGSPAKFDTV-----IRSFDVSIDPDLDQHIKWQSVSDGYTIAHVVGRLVRDATQVAEN 723
Query: 624 ENGML--SLLPISTPAP--PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVT 678
+ + +L P+S + P S+ +GD+K+ +LK L+ K EF G G+L V
Sbjct: 724 QQQRIKWALKPLSNNSKFHPKTSLAIGDVKLGELKRKLTHKNHVAEFKGEGSLVVDGKVV 783
Query: 679 IRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 712
+RK+ + V++G E +Y+++A
Sbjct: 784 VRKISDG----------ETVVDGNPSELFYEVKA 807
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 162/355 (45%), Gaps = 41/355 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ----------- 101
ST+D +L++H H +LPY + + + V+ T P + T D
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLSKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPAS 135
Query: 102 -------YLSRR-------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
Y+S+ S + + ++H + GI P+ AGH+LG ++ I
Sbjct: 136 SSSGTDGYVSQLYTEQDILSTMPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIA 195
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKT 206
G ++++ DY+R ++HL + V+ LIT++ + + PRQ+RE +I+
Sbjct: 196 GLNILFTGDYSRETDRHLIPATVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTI 255
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
L GG VL+P + G ELLLILEDYW H +PIY+ + ++ + +++++ M
Sbjct: 256 LNRGGRVLMPTTAVGNTQELLLILEDYWQRHEEYRKFPIYYASGLARKVMVVYQTYVDDM 315
Query: 265 GDSITKSFETS----------RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG 314
D+I F+ S + + V L ++ G +VLAS L+ G
Sbjct: 316 NDTIKAKFQASAVGQSVGEGGTAGPWDFQFVRALKGIDRFEDV--GGSVVLASPGMLQNG 373
Query: 315 FSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGE 368
S + WA + KN V+ T GT+A+ + +P AV S +P +G+
Sbjct: 374 PSRALLERWAPEAKNGVVITGYSVEGTMAKTILMEPDEIPAVTQNRSANIPSMGK 428
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 179/370 (48%), Gaps = 31/370 (8%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVL 59
+++TP+ G NE S L+ G + DCG + + + P + ID +L
Sbjct: 31 LEITPI-GSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFDSVESDIPDIDLLL 89
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTR---LTYSQN 116
+SH H A+PY + + S VF T P + + + D ++ ++TR + + +
Sbjct: 90 VSHFHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLAD-FVKVTTITRDDDMLFDEK 148
Query: 117 -------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
Y + GI V AGH+LG ++ + G ++Y D++R++++
Sbjct: 149 DLNSSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMVEIAGVKILYTGDFSRQEDR 208
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 222
HL G V+ VLI ++ + PR +RE F ++ + GG L+PV + GR
Sbjct: 209 HLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTTSVHDVVSRGGRCLIPVFALGR 267
Query: 223 VLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
ELLLIL++YW A SL+ PIY+ + ++ + ++++ M D + F+ S N F
Sbjct: 268 AQELLLILDEYWIANPSLHGIPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS--NPF 325
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
K+++ + D+ +GP + +AS L++G S +F W + +N V+ G
Sbjct: 326 EFKYISNIKGIESFDD--NGPCVFMASPGMLQSGLSRQLFERWCTSKRNGVVIPGYSVEG 383
Query: 341 TLARMLQADP 350
TLA+ + ++P
Sbjct: 384 TLAKHIMSEP 393
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 173/391 (44%), Gaps = 47/391 (12%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL +V G + DCG + + P+ +++D L++H
Sbjct: 106 VEITPLGAGCEVGRSCVIVRYKGVTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLITH 165
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVY-----------RLGLLTMYDQYLSRRSVTRL 111
H GALPY + + VF TEP R+ + + + + R
Sbjct: 166 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQAPEQANAAASQRA 225
Query: 112 TYSQ--------------------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145
+ Q ++H + G+ ++ AGH+LG ++ I
Sbjct: 226 SSGQGDKSGAGNYLYDEDDVDKTVQMAECLDFHQQVEVGGVKISCFGAGHVLGACMFLIE 285
Query: 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE--MFQDAI 203
G ++Y D++R K++H+ + V +LI ++ +H RQ RE + +
Sbjct: 286 IGGVRMLYTGDFSREKDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLKAVV 344
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFL 261
L GG LLPV + GR ELLLILE+YW H + PI FL+ +SS + +F+
Sbjct: 345 DIVLNRGGKCLLPVFALGRAQELLLILEEYWTAHPEVCHVPILFLSPLSSKCMVVFDAFV 404
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDI 319
+ GD++ ++ +N F + V L + + + DGP +++A+ L++G S +I
Sbjct: 405 DMCGDAV-RNRALRGENPFAFRFVKNLKSVESARVYIHHDGPAVIMAAPGMLQSGASREI 463
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
F A + KN V+ T GTLA L+ +P
Sbjct: 464 FEALAPESKNGVILTGYSVKGTLADELKREP 494
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 38/362 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D + S
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ VLIT++ + + PPR +RE AI+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQT 378
WA + +N V+ T GT+A+ + + P+ + MSR LV + A EE+
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQ 430
Query: 379 RL 380
++
Sbjct: 431 KV 432
>gi|403346510|gb|EJY72653.1| putative cleavage and polyadenylation specificity factor subunit 2
[Oxytricha trifallax]
Length = 853
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 54/365 (14%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQ-- 77
L+ + L+DCG N+ + L L + +D + LSH +H+GA+PY
Sbjct: 58 LLKVGDLTILLDCGANESYSLDQLNLLRDIIKEQNVDFIFLSHASMMHVGAIPYLQANGC 117
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------------VTRLTYSQNYHL 119
L V ST P ++G LTMY+ ++ ++ + ++Y++N +
Sbjct: 118 LDFQLKVMSTSPTAKMGALTMYEFFIQKKESANFDYFTLQDVEKSFERIELVSYNENRKI 177
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV---LESFVRP 176
+ ++++ +G+ +GG WKI + + ++YAV+ N +K L+ T+ E F
Sbjct: 178 RMRETELILSALPSGNSIGGACWKIEYNKQTIVYAVELN---DKPLHITIPMKFEDFKNA 234
Query: 177 AVLITDAY----NALHNQPPRQQREMFQDAISKTLRAG---------GNVLLPVDSAGRV 223
+LIT+A+ + NQ +Q +++Q + L+ G +L+PV R+
Sbjct: 235 NILITNAFLTPKSFKSNQKIQQAPKIYQFLSEEKLKIKLEKVIADNMGQILIPVTDKNRI 294
Query: 224 LELLLILEDYWAEHS-------------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
L+ L++LE+ + +S + PI +L Y+S T+ +S L WM K
Sbjct: 295 LQCLIMLENMFQTNSKLQSVFKNPQNQLMTMPIVYLEYMSRDTLGVGRSHLGWMNFQDNK 354
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F+ +N + V + E P++++ S+AS G++ + E++ KN
Sbjct: 355 VFQDIDENPINFQFVKDIFTLDEYRKLEHSPRIIVTSLASFSQGYTKQLIYEFSQVPKNE 414
Query: 331 VLFTE 335
++F +
Sbjct: 415 IVFLQ 419
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 37/342 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +LLSH H ALPY + + V +T + + D S S
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y+++ HLS I V P+ AGH+LG ++ ++ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLILE+YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILEEYWERHPEYQKVPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + ++V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDI--GSCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
WA +N V+ T GT+A+ L + P+ + TMS+
Sbjct: 373 LERWAPSERNGVVMTGYSVEGTMAKQLLNE--PEQIPATMSK 412
>gi|294945374|ref|XP_002784648.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239897833|gb|EER16444.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1115
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 190/452 (42%), Gaps = 119/452 (26%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-----VSIDGFNFLIDCGWNDHFDPSLLQPL-------- 48
G SV++ P+S ++ ++ L V+ + L+DCGW + DP +L PL
Sbjct: 12 GVSVEILPISKDTSQYQMAVLKLTDDVTNTSCSVLLDCGWTEEMDPDMLGPLVAEQQPSG 71
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAM------------------------------KQL 78
+++ ID LLS D H GA PY Q
Sbjct: 72 ARLVDQIDVCLLSFADLQHCGAWPYVYCHLRPKKLQYAVAPPPVGEADAAASSSKNSNQP 131
Query: 79 GLSAPVFSTEPVYRLG------------------------LLTMYDQYLS-RRSVTRLTY 113
A V +TEPV RLG LLT+ D ++ +VT L Y
Sbjct: 132 SNGAMVLATEPVRRLGELTLTALHEDIDKMRDAVTTTNDWLLTIDDTIMAFNGAVTPLQY 191
Query: 114 SQNYHLS--------GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
+ + KG + P AG +LGG W+I + ++YAVDY ++HL
Sbjct: 192 GEGVMFTMRGDAGANAKGPTVRFTPLPAGRMLGGAYWRIDVGSQSMVYAVDYQMAGDRHL 251
Query: 166 NGTVLE--SFVRPAVLITDA---------------------------YNA-----LHNQP 191
NG L P+VLIT+ Y+A N+
Sbjct: 252 NGMELPPPEQAPPSVLITNTMPPAVEGAVTCAGQGATSNVATESRRTYDAGITASRSNRR 311
Query: 192 PRQQREMFQDAISKTLRAGGNVLLPVD--SAGRVLELLLILEDYWAEHS--LNYPIYFLT 247
Q E + ++LR G VLLPVD S GRVLELLL+LE WA + YP+ +++
Sbjct: 312 YAQAEEALLGMVLRSLRKDGTVLLPVDCCSTGRVLELLLLLEAAWAADAGLQVYPVVYVS 371
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRD---NAFLLKHVTLLINKSEL-DNAP-DGPK 302
+ +D +K +EWM + F+TS + FL +HV L + + N P PK
Sbjct: 372 PLGDVVLDQIKIRMEWMSRVVHNDFDTSMGFMYHPFLFQHVQLCSSFQDFAQNYPARKPK 431
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+VLAS ASLE G + +IF D + V+FT
Sbjct: 432 VVLASSASLEIGDAREIFCRMCGDPNSTVIFT 463
>gi|323336644|gb|EGA77910.1| Cft2p [Saccharomyces cerevisiae Vin13]
Length = 859
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 188/839 (22%), Positives = 311/839 (37%), Gaps = 199/839 (23%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE---------WMGDSIT 269
L+L L+ E P+ L+Y T+ Y KS LE W + T
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNT 314
Query: 270 KSFET-SR--------------DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG 314
FE SR + V LIN+ + ++ + S E
Sbjct: 315 SPFEIGSRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFECA 374
Query: 315 FSHDIFVEWASDV-KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 373
S D +E +N F E G+ + D + PL EE A+
Sbjct: 375 SSLDKILEIVEQXERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETEAF 425
Query: 374 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANA 420
+ + K+ K LVK E K + +G+ ++ D N N N
Sbjct: 426 KVQLKEKKRXRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNG 478
Query: 421 SADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPMFP 452
+ GG + ++ +D + PS S MFP
Sbjct: 479 VPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFP 538
Query: 453 FYENNSEWDDFGEVIN-----PDD-----------------------------------Y 472
F + DD+G V++ PDD Y
Sbjct: 539 FNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGY 598
Query: 473 IIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFI 525
+ D ++ G G A L +D SK + + VQ+KC ++ +
Sbjct: 599 NMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVIL 658
Query: 526 DYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 585
+ + D RS I + K+VL E + +K V P + + ++ +
Sbjct: 659 NLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFS 717
Query: 586 SDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------------TENGMLS 629
+ + + + L + + ++++ D Y +A V VG+ L
Sbjct: 718 TTIKTLDISIDSNLDNLLKWQRISDSYTVATV---VGRLVXESLPQVXNHQKTASRSKLV 774
Query: 630 LLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
L P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 775 LKPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 38/362 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D + S
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ VLIT++ + + PPR +RE AI+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQT 378
WA + +N V+ T GT+A+ + + P+ + MSR LV + A EE+
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQ 430
Query: 379 RL 380
++
Sbjct: 431 KV 432
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 16/287 (5%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
GI + AGH+LG ++ + G ++Y D++R++++HL + S + P VLI ++
Sbjct: 83 GIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPS-ISPDVLIIEST 141
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 241
H R++RE F + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 142 YGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDI 201
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 301
PIY+ + ++ + ++++ M D I K S N F+ KH++ L + + D+ GP
Sbjct: 202 PIYYASQLAKKCMSVFQTYVNAMNDKIKKQIAIS--NPFVFKHISNLKSIDQFDDI--GP 257
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAVKVTM 359
+V+AS +++G S ++F +W +D +N V+ GTLA+ L PP V +
Sbjct: 258 SVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLAKEVSLVVHNPPNCQSVEL 317
Query: 360 SRRVPLVGEELIAYEEEQTRLKKEEA--LKASLVKEEESKASLGPDN 404
R GE++ + R K E L L+K + + PD+
Sbjct: 318 YFR----GEKMAKVMGQMAREKPEHGKPLSGILIKRGFNYHLIAPDD 360
>gi|242786013|ref|XP_002480717.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720864|gb|EED20283.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1017
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 159/350 (45%), Gaps = 78/350 (22%)
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLE 171
+G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 192 DGLTLTAYSAGHTVGGTIWHIQHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIE 251
Query: 172 SFVRPAVLITDAYNALHNQPPR--QQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+P LI + PP Q+R+ + D I +L GG+VL+P D++ RVLEL
Sbjct: 252 QLRKPTALICSSKGGDKFAPPGGLQKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSY 311
Query: 229 ILEDYW--AEHSLN-------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------ 273
LE W A S N IY + ST+ +S LEWM + I + FE
Sbjct: 312 ALEHAWRDAADSSNGEDVFKKAEIYLAGKKAHSTMRLARSMLEWMDEGIVREFEAVEGGD 371
Query: 274 ------------------TSRDNA------FLLKHVTLLINKSELDNA-PDG-PKLVLAS 307
+SRDN F LKH+ ++ K +L+ DG PK+++AS
Sbjct: 372 AAAARGHKRTDSQSRTTGSSRDNKATKLGPFTLKHLKIVEQKRKLEKILGDGIPKVIIAS 431
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG 367
SL+ G+S + F A D +NL++ TE TL Q D P + K+T+ R +
Sbjct: 432 DTSLDWGYSKETFRTLAEDSQNLIILTE-----TLPSRYQTDDPEQPDKMTLGRMI---- 482
Query: 368 EELIAYEEEQTRLKKEEALKASLVKEEES-----------KASLGPDNNL 406
YEE + + E A L+++ S +A+L PD +
Sbjct: 483 --WHWYEERKDGVAMETASSGELLEQIHSGGREITLVDVERAALDPDEQV 530
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 67/255 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
P+K V TV V + F+DY G D RS++ ++ + P KL+LV G E T +L C
Sbjct: 742 PAKTVYKHSTVTVNARIAFVDYMGLHDKRSLEMLIPLIQPRKLILVGGMKEETTNLADEC 801
Query: 566 L----------KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW 615
+ ++TP+ E++D + D A+ V+LS L+ + ++ + +
Sbjct: 802 RNLLAGKDAGDRSAVVDIFTPRNGESVDASVDTNAWVVKLSNNLVRRLKWQHVRSLGVVA 861
Query: 616 VDAEVGKTEN-------------------------------------------GMLSLLP 632
+ A++ E +L +LP
Sbjct: 862 LTAQLKPPETVQKEDEAIESISKKQKLLETEPDTVLAPVDGANASSLSKPDTYPILDVLP 921
Query: 633 ISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 688
S A + + VGDL++ADL+ + S G + EF G G L V +RK
Sbjct: 922 ASIAAGTRSMARPLHVGDLRLADLRKLMISAGHKAEFRGEGTLLIDGTVAVRK------- 974
Query: 689 GGGSGTQQIVIEGPL 703
S T I +E P+
Sbjct: 975 ---SSTGTIEVEAPV 986
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD L L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDETFDVLELAELEKHIPTLSLILLTHATISHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATGPVISLGRTLLQDMYTS 106
>gi|238593937|ref|XP_002393335.1| hypothetical protein MPER_06944 [Moniliophthora perniciosa FA553]
gi|215460674|gb|EEB94265.1| hypothetical protein MPER_06944 [Moniliophthora perniciosa FA553]
Length = 362
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 162/340 (47%), Gaps = 63/340 (18%)
Query: 434 DILIDGFVPPSTSV-------AP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAA 483
DI + G V +TS AP MFP+ E DD+GE I+ ++ K + +++ A
Sbjct: 32 DIYLKGNVSKATSFFKTVDGQAPRFRMFPYVEKKRRVDDYGETIDVGMWLRKSKILEEEA 91
Query: 484 MHIGGDDGKLDEGSASLILDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
D + + L A PSK VS+E+ VQ+ C L+F+D EG +DGR+IKTI+
Sbjct: 92 ESDDIKDYRRRQAEEELKRQALEPPSKFVSSEVEVQMACRLLFVDMEGLSDGRAIKTIIP 151
Query: 542 HVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ P K+++VH S +T L + C ++ + +Y P + E+I + + + + +S++L
Sbjct: 152 QIGPRKMIVVHASESSTNALIESCANIRAMTKEIYAPTLGESIQIGQQISNFYISISDEL 211
Query: 600 MSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PIST--------------PAP------ 638
+ N+ + D E+ +V V + ++ +L P+S P P
Sbjct: 212 LQNLNVSRFEDNEVGFVTGRVVAHASSIVPILEPVSVLPGRESADEVEQAQPKPLVLGSR 271
Query: 639 PH----KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG----------EYVTIRK-- 681
P S ++G+LK+ LK L++ GI E AG G L CG V +RK
Sbjct: 272 PAATLPSSTMIGELKLTALKSRLTAIGIHAELAGEGVLICGATTGPDSTLENTVAVRKTG 331
Query: 682 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+GP + +EG + + YY +R +Y+ L+
Sbjct: 332 IGPL-----------VELEGNVSDVYYAVRQEIYNLHALV 360
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 45/365 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + K V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDV--GGCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S ++ WA + +N V+ T GT+A+ L + P+ + MSR V +A +
Sbjct: 369 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSRSAGGVSRRGLAGTD 426
Query: 376 EQTRL 380
E+ ++
Sbjct: 427 EEQKI 431
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 162/354 (45%), Gaps = 35/354 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL LV+I G N ++DCG + F D S + K+ ID
Sbjct: 4 IKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRSVTRLTYSQ 115
V++SH H GALPY + +G + P++ T P + LL + + + ++
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFIFTS 123
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N + ++ H L+G D+N ++HL ++ R
Sbjct: 124 NMIKDCMNKVKTISLH--EELMG-----------------DFNMTPDRHLGPAEIDR-CR 163
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P VLI+++ A + ++ RE F + + GG VL+PV + GR EL ++LE YW
Sbjct: 164 PDVLISESTYATTIRDSKRARERDFLKKVHDCINNGGKVLIPVFALGRAQELCILLESYW 223
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
+L+ PIY ++ +DY K F+ W + I K+F + N F KHV L +
Sbjct: 224 ERMNLSIPIYVSKGMAEKAVDYYKLFVTWTSEKIKKTF--VKRNMFDFKHV--LPFEDSF 279
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 348
+ P GP +V A+ L +G S IF +WA++ KN+V+ GT+ L A
Sbjct: 280 ADTP-GPMVVFATPGMLHSGQSLKIFKKWATNEKNMVIMPGYCVQGTVGSKLIA 332
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 153/356 (42%), Gaps = 38/356 (10%)
Query: 27 GFNFLIDCGWN---------DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
G + DCG + FD L + + I V+++H H+GALPY +
Sbjct: 26 GKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVVITHFHLDHIGALPYFTEV 85
Query: 78 LGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRLTYSQNYH 118
G PV+ T P L L + D QY R V L Q
Sbjct: 86 CGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSYEDILRCMRKVIPLDLKQTIQ 145
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
+ + + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 146 VD---KDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDRHLGAAQIDR-LKLDL 201
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+DYW
Sbjct: 202 LITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIPAFALGRAQELCILLDDYWERM 261
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L PIYF ++ Y K + W I S+ N F KHV +S ++N
Sbjct: 262 NLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVH--NPFDFKHVCHF-ERSFINNP 318
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
GP ++ A+ + GFS ++F +WA KNLV GT+ L + P +
Sbjct: 319 --GPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGTIGHKLMSGKPTR 372
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 157/363 (43%), Gaps = 40/363 (11%)
Query: 22 LVSIDGFNFLIDCGWNDHFD-----PSLLQPLSKVASTID------AVLLSHPDTLHLGA 70
+V+I G + DCG + + P + L+ T D V+++H H+GA
Sbjct: 20 VVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTSAISCVIITHFHLDHIGA 79
Query: 71 LPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRL 111
LPY + G P++ T P L L + D QY + V +
Sbjct: 80 LPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSYEDILRCMKKVIPV 139
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 171
Q ++ +V+ + AGH+LG + ++Y DYN ++HL +E
Sbjct: 140 DLKQTIQVN---RDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDYNMTPDRHLGAAQIE 196
Query: 172 SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 230
++ +LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 R-LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIPTFALGRAQELCILL 255
Query: 231 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
+DYW +L PIYF ++ Y K + W I S+ N F KHV
Sbjct: 256 DDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQ--NPFDFKHVCHF-- 311
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ N P GP ++ A+ + GFS ++F WA+ KNLV GT+ L +
Sbjct: 312 ERSFINDP-GPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVAGTIGHKLMSGK 370
Query: 351 PPK 353
P +
Sbjct: 371 PTR 373
>gi|327308534|ref|XP_003238958.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
gi|326459214|gb|EGD84667.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
Length = 1024
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 174/432 (40%), Gaps = 123/432 (28%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPI 86
Query: 85 FSTEPVYRLG---LLTMYDQ------YLSRRSVTR------------LTYSQN---YHLS 120
++T PV G L +Y +L SVT + SQ Y ++
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATSSSQGPSGYEIT 146
Query: 121 GKGE---------------------------------------GIVVAPHVAGHLLGGTV 141
G G G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPTNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 142 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 189
W I E ++YAVD+++ +E + G V+E +P LI A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASGGDKF 266
Query: 190 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 238
P R++R+ + D I GG VLLP DS+ R+LE+ +LE W E +
Sbjct: 267 ALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARILEIAYVLEHAWREAADSEDLNDP 326
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 273
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEATTGKAAGGASNQPSKGA 386
Query: 274 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 323
S+ +A F KH+ L+ +K++LD G K++L+ SLE G S +
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGSKVILSPDTSLEWGLSKHVLKHI 446
Query: 324 ASDVKNLVLFTE 335
A +NL++ TE
Sbjct: 447 AEGNENLIIMTE 458
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 58/248 (23%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 554 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ + T L C + + V+TP +T+D + D A+ V+LS L
Sbjct: 791 TKDETMSLAAECRNLLAANRGAGTTSTTKLAVDVFTPSRGDTVDASVDTNAWMVRLSRPL 850
Query: 600 MSNVLFKKLGDYEI------------------------------AW-----VDAEVGKT- 623
+ + ++ + + + AW V+++ ++
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQSL 910
Query: 624 ----ENGMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
+ +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 676 YVTIRKVG 683
+V +RK G
Sbjct: 971 FVAVRKAG 978
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 178/386 (46%), Gaps = 33/386 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SLLQPLSKVA-STIDAVLLSH 62
+ +TPL +L+ G L+DCG + +D + L L ++ +D +L++H
Sbjct: 5 MSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEPDQVDVLLITH 64
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL---------------TMYDQYLS 104
H+ +LPY ++ +F T P V RL L +Y +
Sbjct: 65 FHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYTEADL 124
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+ + ++ ++H + G+ AGH+LG ++ ++ G ++Y DY+ ++H
Sbjct: 125 QSCIDKIEL-MDFHTTVTVGGLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMEDDRH 183
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRV 223
L + + P VLI +A + R +RE F I + + GG L+PV + GR
Sbjct: 184 LMAAEIPA-ESPDVLIVEATYGVQVHASRAEREARFTGTIERVISRGGRCLIPVFALGRA 242
Query: 224 LELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL++YW H N PI++ + ++S + +++ M I + S N F
Sbjct: 243 QELLLILDEYWQANPHLQNIPIWYASKLASRALRVYQTYANMMNARIRSQMDVS--NPFR 300
Query: 282 LKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
+ + L I+ + D++ GP +V AS L++G S +F WASD KN VL
Sbjct: 301 FRFIQNLKSIDVNSFDDS--GPSVVFASPGMLQSGVSRQLFDRWASDHKNGVLIAGYAVE 358
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPL 365
TLA+ + A PK V RR PL
Sbjct: 359 HTLAKEIMAQ--PKEVVTLEGRRQPL 382
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 169/357 (47%), Gaps = 54/357 (15%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ VF +T+ +YR LL+ + + S
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHATKAIYRW-LLSDFVKVTSIGGGG 122
Query: 105 ------------------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 140
RS R+ + +YH + + +GI + AGH+LG
Sbjct: 123 DPRMNNDDSSLNTSSGNLYTDDDLMRSFDRIE-TIDYHSTIEVDGIRFTAYHAGHVLGAC 181
Query: 141 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-F 199
++ I G V++ D++ +++HL + V+P +LI+++ PR ++E
Sbjct: 182 MYLIEIGGLKVLFTGDFSCEEDRHLQVAEIPP-VKPDILISESTFGTATHEPRLEKEARM 240
Query: 200 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----EHSLNYPIYFLTYVSSSTID 255
I TL GG +L+PV + GR ELLLILE+YW H++N IYF + ++ +
Sbjct: 241 TSIIHSTLLKGGRILMPVFALGRAQELLLILEEYWGLNDDLHNIN--IYFASSLARKCMA 298
Query: 256 YVKSFLEWMGDSITKSFETS----RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMAS 310
+++ M DSI S ++ + N F K++ N LD D GP +V+AS
Sbjct: 299 VYQTYTNIMNDSIRLSTSSTNSGEKRNPFQFKYIK---NIRSLDKFQDFGPCVVVASPGM 355
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP----PKAVKVTMSRRV 363
L+ G S ++ WA D +N V+ T GT+A+ L +PP VT+ RR+
Sbjct: 356 LQNGVSRELLERWAPDPRNAVIMTGYSVEGTMAKELLTEPPTIQSATNADVTIPRRI 412
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 40/349 (11%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSL----LQPLSKVAS---TIDAVLLSHPDTLHLGALPYA 74
+V+I+ + DCG + + S Q LSK + +D +L+SH H GALPY
Sbjct: 18 VVNINNKTIMFDCGMHMGYSDSRKFPDFQALSKTGNFDKIVDCILISHFHLDHCGALPYF 77
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRS-----------------VTRLTYSQ 115
+ LG P++ T P + + + D + LS +S + + ++
Sbjct: 78 TEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIYSFEDIKKCMEKIVPINMNE 137
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+S +G + + AGH++G ++ + + V+Y DY+ ++HL GT +R
Sbjct: 138 TVEVS---KGFTITAYYAGHVIGAAMFYVKVGDQSVVYTGDYSTTADQHL-GTAWIDTLR 193
Query: 176 PAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P ++IT++ Y ++ + + F +I + GG L+P+ + GR E+ LI+E YW
Sbjct: 194 PDLMITESTYGSVIRDCRKAKEREFLQSIHNCIERGGKTLIPIFALGRAQEICLIVESYW 253
Query: 235 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294
L P+YF ++ + K F+ + +S+ + + N F H+ SEL
Sbjct: 254 ERMGLEIPVYFAGGMTEKANEIYKRFINYTNESVRE--KILEKNVFEFSHIKPYRKGSEL 311
Query: 295 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 340
GP ++ +S L +G S IF SD +NLV+ + RG G
Sbjct: 312 Q----GPCVIFSSPGMLHSGTSLRIFKNICSDPRNLVILPGYCVRGTLG 356
>gi|407847992|gb|EKG03521.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 883
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 175/687 (25%), Positives = 276/687 (40%), Gaps = 106/687 (15%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
P + L+ IDG L+DCGWND FD S L L + AVL S P+ + GALP+ ++
Sbjct: 108 TPFANLIEIDGVRILLDCGWNDEFDVSFLDTLMPYLGDVHAVLFSTPELVSCGALPFVVE 167
Query: 77 QLGLSAPVFSTEPVYRLGL--------------------------LTMYDQYLSRRSVTR 110
+ V + ++GL +T+ Y + RSVT
Sbjct: 168 HISTGTCVAAAGSTAKMGLHGVLHPFLYLFPNVKTWRLENGLDFEMTVDKVYSAFRSVTE 227
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
Y + + + P +G +LGG W I +++ Y D++ + L
Sbjct: 228 -PYGGKVTIRHRDAEVECYPIFSGRMLGGHGWLIKYKIDELFYCPDFSLKPS-----YAL 281
Query: 171 ESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK---TLRAGGNVLLPVDSAGRV 223
+ F+ P + I + L R+ E I + TLR G +VL+PV AGR
Sbjct: 282 KRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQLNALIREILGTLRNGKDVLIPVSVAGRG 341
Query: 224 LELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
LE+L I+ E NY + F + ++ + + E + D I S +
Sbjct: 342 LEILTIVTHLLTEKGGDNYTVVFASIQAAELVAKASTMTEALLDEIILS-----ERQLFA 396
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW----ASDVKNLVLFTERGQ 338
VT + L A GPK+ +A +L+ G S ++ + A + +NLV+ T +
Sbjct: 397 NVVTCKTAEEVLSVA--GPKICIADGETLDYGVSAELLGHFLQADADERENLVVLTGAPK 454
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 398
T A + A A+ + + R PL EEL Y Q L+ EE KA L A
Sbjct: 455 PHTNAFTMAAAKKGDAIDLRYTIRSPLGKEELEEY-YLQIELEMEEQRKA-LEGGAYEVA 512
Query: 399 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPS----TSVAPMFPFY 454
SL +N+ D +N D + R G V PS S FP
Sbjct: 513 SLEDENS--------DNDNDAGKEDEKQL---RVTQQCTPGLVLPSYMTFVSKHLQFPIL 561
Query: 455 ENNSEWDDFGEVINPDDYIIK---DEDMD-----QAAMHIGGDDGKLDEGSASLILDAK- 505
E + + + DY E+M +A I D+G EG + DA+
Sbjct: 562 ETAASLAN--AMFKKVDYAYGLPISEEMQFLMRRKAPARIYSDEGP--EG-IQMHNDAQA 616
Query: 506 ----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL--KLVLVHGSAEATE 559
PSK N V+ + D G AD ++++L K+VL+ G+ +
Sbjct: 617 EANIPSKTFVNTAMVRKNSRVFMTDLSGFADAAIMRSLLKSRFSFAKKIVLIRGTVDDHR 676
Query: 560 HLKQHC----LKHVCPHVYTPQIEET-IDVTSDLCAYKVQLSEKLMSNVLFKKL------ 608
L Q C + +V+ P+ + T +++ + + +Y VQL L +N L L
Sbjct: 677 ALYQFCRSEKVMKCGENVFFPRTQRTHLELATHVYSYMVQLDPTL-ANALPSALRRVKES 735
Query: 609 ---GDYEIAWVDAEVGKTENGMLSLLP 632
G +++ WVD G E+ +SL P
Sbjct: 736 RSSGFWDVGWVD---GALESSFVSLTP 759
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 169/356 (47%), Gaps = 30/356 (8%)
Query: 22 LVSIDGFNFLIDCGWN-DHFDPSLLQPLSKVASTID------AVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + + D S+++++ D ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSCIIITHFHLDHIGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRSVTRLTYSQNYHLSG----------- 121
+ G + P++ T P L +T+ Y + + R ++ ++ +
Sbjct: 80 TEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECLKKVVPVDLKQ 139
Query: 122 ---KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG ++ ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-MQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LIT++ A + + RE F A+ L +GG VL+P + GR EL ++L+DYW
Sbjct: 199 LITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L +PIY ++ Y K + W + +++ T NAF K+V ++S +D A
Sbjct: 259 NLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTR--NAFDFKNVQKF-DRSMID-A 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
P GP ++ A+ + +GFS ++F WA NL+ GT+ L + P K
Sbjct: 315 P-GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTK 369
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 173/366 (47%), Gaps = 29/366 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G + DCG + + P A +ID +L++H H ++PY + +
Sbjct: 41 LLKFKGKTIMFDCGAHPGYRGEESLPFFDEVDAESIDLLLVTHFHVDHAASVPYFLTKTT 100
Query: 80 LSAPVFSTEPVYRLGLL-----------------TMYDQYLSRRSVTRLTYSQNYHLSGK 122
V+ T P + L ++Y + + +V ++ +YH +
Sbjct: 101 FKGKVYMTYPTLAICKLVWSDFIKVSGISEQYGGSLYTEKDIQETVNKII-CIDYHQEVE 159
Query: 123 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD 182
EG+ + AGH+LG ++ + G ++Y DY+R++++HL + S V+ VL+ +
Sbjct: 160 VEGVKFWCYNAGHVLGACMFIVQIAGVRLLYTGDYSRQEDRHLMAAEMPS-VQVHVLVVE 218
Query: 183 AYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--L 239
+ + PR+ RE F +A+ TL+ GG VLLPV + GR ELLL+L++YW ++
Sbjct: 219 STYGVQTHEPRRSREKRFLEAVVSTLQLGGRVLLPVFAIGRAQELLLLLDEYWRKNPELH 278
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
YPI L+ ++ I ++++ M + I + +N F +H+ + +E + +
Sbjct: 279 RYPIICLSGMAKRCIASYQTYINQMNNRIRHLNDI--ENPFEFRHIRYMTTMAEFQD--N 334
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 359
P +V+AS L+ G S D+F W N V+ T TLA+ L D P +
Sbjct: 335 CPCVVMASPGMLQNGPSRDLFDRWCEYRHNSVVITGYCVQNTLAKEL-LDAQPATHTLQD 393
Query: 360 SRRVPL 365
+ VPL
Sbjct: 394 GKEVPL 399
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 172/365 (47%), Gaps = 45/365 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ ++ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLVSIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + K V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDL--GGCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S ++ WA + +N V+ T GT+A+ L + P+ + MSR V +A +
Sbjct: 369 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSRSAGGVSRRGLAGTD 426
Query: 376 EQTRL 380
E+ ++
Sbjct: 427 EEQKI 431
>gi|224140917|ref|XP_002323823.1| predicted protein [Populus trichocarpa]
gi|222866825|gb|EEF03956.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 7/251 (2%)
Query: 98 MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
++D+ RS+ ++ ++H + GI + AGH+LG ++ + G V+Y DY
Sbjct: 3 LFDEKDINRSMDKIEVI-DFHQTLDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 61
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 217
+R +++HL + F +I Y +QP + + F D I T+ GG VL+P
Sbjct: 62 SREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRVLIPA 121
Query: 218 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 275
+ GR ELLLIL++YWA H N PIY+ + ++ + ++++ M + I F S
Sbjct: 122 FALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYILSMNERIRNQFANS 181
Query: 276 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
N F KH++ L + + + GP +V+AS L++G S +F W SD KN +
Sbjct: 182 --NPFKFKHISPLNSIEDFSDV--GPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVLPG 237
Query: 336 RGQFGTLARML 346
GTLA+ +
Sbjct: 238 YVVEGTLAKTI 248
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 164/346 (47%), Gaps = 45/346 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST---EPVY------------------ 91
ST+D +LLSH H ALPY + + V +T + +Y
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I V P+ AGH+LG ++ ++ G +
Sbjct: 135 QRTSLYTEHDHL----STLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLILE+YW H PIY++ ++ + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILEEYWERHPEFQKIPIYYIGNMARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F A + ++V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDI--GSCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
S ++ WA +N V+ T GT+A+ L + P+ + TMS+
Sbjct: 369 SRELLERWAPSERNGVVMTGYSVEGTMAKQLLNE--PEQIPATMSK 412
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 37/364 (10%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
+V+ G + + DCG + F P+ S+ID L++H H GA+PY +
Sbjct: 41 VVTFKGRSVMFDCGIHPAFSGIGSLPVFDAVDISSIDLCLVTHFHLDHSGAIPYFVSSTD 100
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRL---------------TYSQ--------- 115
+ +F TEP + L D R T Y++
Sbjct: 101 FNGRIFMTEPTKAICKLVWQDYARMNRFSTNSPVPVDSDEAPVSCVNLYTEPDIEKAMKR 160
Query: 116 ----NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 171
++ + +G+ ++ + AGH+LG ++ + G ++Y DY+R ++H+ +
Sbjct: 161 IEIIDFRQQAEIDGVRISCYGAGHVLGACMFLVEIGGVRILYTGDYSREDDRHVPRAEIP 220
Query: 172 SFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 230
V VLI ++ PR+ RE F + L G LLPV + GR ELLLIL
Sbjct: 221 P-VDVHVLICESTYGTRLHEPRKDREKRFLGCVQSILSRQGKCLLPVFAIGRAQELLLIL 279
Query: 231 EDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 288
+++WA+ S N PIY+ + +S + ++++ GD++ K + N F + V +
Sbjct: 280 DEHWAQTSCLHNIPIYYASPMSVKCMRVFETYINQCGDAVRKQADMGI-NPFNFQFVKTV 338
Query: 289 INKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
+ SE+ +A +GP +++A+ L+ G S DIF WA D +N V+ T GT A L
Sbjct: 339 NSISEIKDAIYSEGPCVIMAAPGMLQNGTSRDIFEVWAPDKRNGVILTGYAIRGTPAYEL 398
Query: 347 QADP 350
+ +P
Sbjct: 399 RREP 402
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 45/346 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW +H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
S ++ WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 369 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
G+ P+ AGH+LG ++ I G ++Y DY+R +++HL L +RP +LI ++
Sbjct: 114 GLSFTPYHAGHVLGACMFLIDIAGLQILYTGDYSREEDRHLVRAELPP-IRPDLLIVEST 172
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 241
+ R+ RE F ++ ++ GG+VLLPV + GR ELLLIL++YWA H
Sbjct: 173 YGVQGHEARESREARFTSSVHTIVKRGGHVLLPVFALGRAQELLLILDEYWAAHPELHGV 232
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPD 299
P+Y+ + ++ + ++++ M I F +DN F+ KH++ L E A
Sbjct: 233 PVYYASNLARKCMAVYQTYIHTMNSHIRSRF-ARKDNPFVFKHISHLPATRGWERKIAEA 291
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
GP ++LAS + +G S ++ WA D KN V+ T GT+AR + +P
Sbjct: 292 GPCVILASPGFMSSGPSRELLELWAPDAKNGVIITGYSIEGTMARDIILEP 342
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 45/346 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW +H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
S ++ WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 369 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 162/369 (43%), Gaps = 45/369 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVAST 54
G Q P + +V + G + DCG + F + LL +
Sbjct: 10 GAERQTVPTGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTEI 69
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRSVTRLT 112
IDAV+++H T HLGALPY + G P+ T P + + +L Y + + R RL
Sbjct: 70 IDAVVITHFHTDHLGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNADRPGERLP 129
Query: 113 YSQNY--------HLSGKGEGIVVAP------HVAGHLLGGTVWKITKDGEDVIYAVDYN 158
Y++ + + +VVAP H AGH+LG + +T +Y D+N
Sbjct: 130 YNEQHVRDCLRRVTAVDLHQVVVVAPGLSFTFHYAGHVLGAAMVHMTAGHLTALYTGDFN 189
Query: 159 RRKEKHLN-----------GTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKT 206
++HL G S P VLI++A Y A R + A+ +T
Sbjct: 190 SSPDRHLGPAEAPLALLQGGPSGASVRHPDVLISEATYAATLRDSKRARERDLLGAVVET 249
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
+ AGG VL+P + GR ELL+++ D W + L PIYF + +++ + Y + L W
Sbjct: 250 VAAGGKVLIPTFAMGRAQELLMLITDCWERNGLQVPIYFSSAMAARALVYYQLLLNWTNA 309
Query: 267 SITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 324
+ F+ H+ + I+ + + AP GP L+ AS ++ +G + + F WA
Sbjct: 310 NHIHC-------VFVNVHICVCTHIHTTWMMLAP-GPALLFASPGNIASGVALEAFRSWA 361
Query: 325 SDVKNLVLF 333
KNL++
Sbjct: 362 GSSKNLLVL 370
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 167/346 (48%), Gaps = 45/346 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ ++ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTVNSIHITPFPAGHVLGAAMFLVSIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRD-NA----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D NA + + V L + D+ G ++LAS L++G
Sbjct: 311 IKRLFRQRMAEAEASGDKNASAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQSGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 361
S ++ WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 369 SRELLERWAPNERNGVIMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|299116292|emb|CBN76100.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 752
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 138/256 (53%), Gaps = 15/256 (5%)
Query: 98 MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+YD+ R + ++ ++H + EGI + AGH+LG ++ I G V+Y DY
Sbjct: 20 LYDEKDLNRCIDKIELV-DFHQVLEHEGIKFWCYNAGHVLGAAMFMIEIAGVHVLYTGDY 78
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLP 216
+ ++HL + S P VLI ++ + PR++RE F +SK ++ GG L+P
Sbjct: 79 SMEADRHLMAAEMPS-TSPDVLIVESTYGVQVHEPRKERESRFVGTVSKAVKKGGRCLIP 137
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW +H + PIY+ + ++S K+++ M + I + +
Sbjct: 138 VFALGRAQELLLILDEYWQQHRELHHIPIYYASRLAS------KTYINMMNEHIRQQMDV 191
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ N F +H+T L + + D++ GP +V+AS L++G S +F W +D KN VL
Sbjct: 192 A--NPFKFQHITNLKSIDQFDDS--GPSVVMASPGMLQSGVSRMLFDRWCTDDKNSVLIP 247
Query: 335 ERGQFGTLARMLQADP 350
GTLA+ L + P
Sbjct: 248 GYSVEGTLAKKLLSMP 263
>gi|2394306|gb|AAB70268.1| 73 kDA subunit of cleavage and polyadenylation specificity factor
[Homo sapiens]
Length = 379
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N+H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++
Sbjct: 20 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IK 78
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 79 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 138
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 139 QNHPELXDXPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMD 196
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 352
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P
Sbjct: 197 HFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--P 252
Query: 353 KAVKVTMSRRVPL 365
+ + +++PL
Sbjct: 253 EEITTMSGQKLPL 265
>gi|126030715|pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 129/494 (26%), Positives = 205/494 (41%), Gaps = 103/494 (20%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 312
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 313 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 371
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR 431
A++ + K++ K LVK E K + +G+ ++ D N A R
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAM---------R 467
Query: 432 YRDILIDGF--VPP 443
+DIL++ VPP
Sbjct: 468 NQDILVENVNGVPP 481
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 160/337 (47%), Gaps = 44/337 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYR----------------- 92
S +D +L+SH H +LPY M+ + VF +T+ +YR
Sbjct: 64 SKVDILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSD 123
Query: 93 -----------LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 141
G +Y RS R+ + +YH + + +GI + AGH+LG +
Sbjct: 124 ARLNNSDPNANTGSSNLYTDDDLMRSFDRIE-TIDYHSTIELDGIRFTAYHAGHVLGACM 182
Query: 142 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQ 200
+ I G V++ DY+ +++HL + ++P +LIT++ PR ++E
Sbjct: 183 YFIEIGGLKVLFTGDYSSEEDRHLQVAEVPP-IKPDILITESTFGTATHEPRLEKETRMT 241
Query: 201 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSSTIDYVK 258
+ I TL GG +L+PV + GR ELLLILE+YW+ + N IY+ + ++ + +
Sbjct: 242 NIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQ 301
Query: 259 SFLEWMGDSI----TKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEA 313
++ M DSI + + + + N F K + + N LD D GP +V+AS L+
Sbjct: 302 TYTNIMNDSIRLTTSATNSSKKQNPFQFKFIKSIKN---LDKFQDFGPCVVVASPGMLQN 358
Query: 314 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
G S ++ WA D KN V+ T GT+A+ L +P
Sbjct: 359 GVSRELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEP 395
>gi|401841928|gb|EJT44237.1| CFT2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 861
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 180/827 (21%), Positives = 333/827 (40%), Gaps = 173/827 (20%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV +D ++LS P T LGA L
Sbjct: 19 VVQFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEVDVIILSQPTTECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRL 111
Y +S V++T PV LG ++ D Y S + L
Sbjct: 75 YNFVSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIDKSFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E +IYA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLIYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ + F+D + + L + G+V++PVD +G+
Sbjct: 195 DSAGKPLSTLMRPSAIITTLDKFGSSQPFKKRSKSFKDTLKRGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ ++Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLIVSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
F + +I+ +EL N G K+ ++ +EA +++ + + K ++ T+
Sbjct: 314 TSPFEIGSRIKIISPNEL-NKYAGTKICF--VSEVEA-LINEVLTKVGNSEKTTLILTKP 369
Query: 337 GQ--FGTLARMLQADPPPKA-VKVTMSRRVPLVGEELIAYE---------------EEQT 378
+L ++L+ ++ K + P + + I+ + + Q
Sbjct: 370 NSESASSLDKILELLKQKESNRKSSFKEGKPFICDRNISIDTIKEEPLKKEELEAFKVQL 429
Query: 379 RLKKEEALKASLVKEEESKA---------SLGPDNNLSGDPMVIDANNANASADVV---- 425
+ KK+ K L+ + ESK D +++G ++ D N + D +
Sbjct: 430 KEKKQNRNKRILLVQRESKKLANGGAIIDDTKADRSINGQDILADNINDESVTDNIIGED 489
Query: 426 --------------------EPHGGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFG 464
+ + ++ +D + PS ++ MFPF + DD+G
Sbjct: 490 EDEEEEENDNLLSLLKDNSEKSSMKKNIEVPVDIIIQPSATLKHKMFPFNPIKVKKDDYG 549
Query: 465 EVIN-----PDDYI----------IKDEDMDQAAM-------------HIGGDDGK---- 492
V++ PDD IKD+ ++ ++G K
Sbjct: 550 SVVDFTMFIPDDVDNINQNSRKRPIKDDSRSANSVGEEEDKNEDEDGYNVGDPVSKKRKH 609
Query: 493 ------------LDEGSAS------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGR 534
EGS + L ++ SK + +Q+KC ++ ++ + D R
Sbjct: 610 RTSRTSRYSGFTAAEGSENFDNLDYLKIEKTLSKRTISTANIQLKCSVVVLNLQSLVDQR 669
Query: 535 SIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQ 594
S I + K+VL E + V P + + ++ + + A ++
Sbjct: 670 SASIIWPSLRSRKMVLSAPKQVQNEEVMAKLTNKNIEVVNMP-LNKIVEFNTTIKALEIS 728
Query: 595 LSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPPHK 641
+ +L + + ++++ D Y +A V + K L L P+ + HK
Sbjct: 729 IDSELDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQRTASRNKLVLKPLKGSSRIHK 788
Query: 642 S--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
+ + +GD+++ LK L+ K EF G G L V +RK+ A
Sbjct: 789 TGALSIGDVRLVQLKKQLTDKNYIAEFKGEGTLVIDGKVAVRKINDA 835
>gi|149641381|ref|XP_001505542.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Ornithorhynchus anatinus]
Length = 595
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N+H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++
Sbjct: 50 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IK 108
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 109 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 168
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 169 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMD 226
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 352
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P
Sbjct: 227 HFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--P 282
Query: 353 KAVKVTMSRRVPL 365
+ + +++PL
Sbjct: 283 EEITTMSGQKLPL 295
>gi|444731702|gb|ELW72051.1| Cleavage and polyadenylation specificity factor subunit 3 [Tupaia
chinensis]
Length = 587
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N+H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++
Sbjct: 42 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IK 100
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 101 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 160
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 161 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMD 218
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 352
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P
Sbjct: 219 HFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--P 274
Query: 353 KAVKVTMSRRVPL 365
+ + +++PL
Sbjct: 275 EEITTMSGQKLPL 287
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 169/373 (45%), Gaps = 36/373 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + FD P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHPAFDGLSALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLS------------------RRSVTRLTYSQNYHLS 120
VF T P + + D S + + +YH +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIQDSVRVSSNSSSTEQSSTPYTEADHASTFPMIEAIDYHTT 159
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
I + P AGH+LG ++ I+ G +++ DY+ ++HL + + V+ VLI
Sbjct: 160 HTISSIRITPLPAGHVLGAAMFLISISGLTILFTGDYSIEPDRHLISASVPANVKVDVLI 219
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 238
T++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW+ H
Sbjct: 220 TESTYGVASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWSRHKD 279
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET---------SRDNAFLLKHVTLL 288
N PIY+ + ++ + ++++ M ++I + F + + K++ L
Sbjct: 280 LQNIPIYYASNLARKCMLVYQTYVGAMNENIKRLFRERMAESEAGGTNGGPWDFKYIRSL 339
Query: 289 INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 348
+ D+ G ++LAS ++ G S ++ WA KN V+ T GT+A+ +
Sbjct: 340 KSLERFDDV--GSCVMLASPGMMQNGVSRELLERWAPSDKNGVVITGYSVEGTMAKSIMQ 397
Query: 349 DPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 398 E--PDQIQAIMSR 408
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 177/405 (43%), Gaps = 58/405 (14%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + +VSI N + DCG + + D S + + +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVLDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRSVTRLT---- 112
V+++H H GALPY + G P++ T L +++Y Y S + +L
Sbjct: 63 VIITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKYNYNSLTFMLQLIQLPT 122
Query: 113 ------YSQNYH---LSGKGEG-----------------------------IVVAPHVAG 134
++Y + KGE + + P+ AG
Sbjct: 123 KAIVPILLEDYRKIVVDRKGETNFFTPQMIKDCMKKVIPVALHQTIDVDDELSIKPYYAG 182
Query: 135 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ 194
H+LG ++ E V+Y DYN ++HL +++ V P +LIT+ A + ++
Sbjct: 183 HVLGAAMFYCKVGEESVVYTGDYNMTPDRHLGSAWIDA-VNPTLLITETTYATTIRDSKR 241
Query: 195 QREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSST 253
RE F + + + GG VL+PV + GRV EL ++++ YW + L+ PIYF ++
Sbjct: 242 GRERDFLKRVHECVEKGGKVLIPVFALGRVQELCILIDTYWEQMGLSVPIYFSEGLAEKA 301
Query: 254 IDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEA 313
Y K F+ W I ++F + N F KH+ L +AP GP ++ A+ L A
Sbjct: 302 NFYYKLFIGWTNQKIKQTF--VKRNMFDFKHIKPF--DRMLVDAP-GPMVLFATPGMLHA 356
Query: 314 GFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKV 357
G S ++F +WA N+ + GT+ ++L P+ V++
Sbjct: 357 GASLEVFKKWAPSELNMTIIPGYCVVGTVGNKLLSNASGPQMVEI 401
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 158/325 (48%), Gaps = 37/325 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 81 STVDALLITHFHLDHAAALTYIMEKTNFKEGKGKVYMTSPTKAVYRFMMQDFVRISTTSA 140
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L T + S RS+ ++Q G+ P+ AGH+LG ++ I G V
Sbjct: 141 EDQLFTESEMIASWRSIQVSDFNQEI---VPASGVRFTPYPAGHVLGAAMFLIEIAGLKV 197
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY--NALHNQPPRQQREMFQDAISKTLRA 209
+Y DY+R +++HL+ + +++ Y L N+P +++R F + + +R
Sbjct: 198 LYTGDYSREEDRHLHAAEIPKEQTDVLIVESTYGVQTLENRPEKEKR--FTELVHNIIRR 255
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYVKSFLEWMG 265
GG VL+P + GR ELLLIL++YW HS+ PIY+ + ++ + ++++ M
Sbjct: 256 GGRVLMPSFALGRAQELLLILDEYWQRNPDLHSI--PIYYASNLARKCMAVYQAYIRTMN 313
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
+I + F+ S +N F K ++ L + + + GP ++LAS L++G S ++ WA
Sbjct: 314 KNINRRFD-SGENPFQFKFISELGDLRKWQD--KGPCVMLASPGMLQSGTSRELLERWAP 370
Query: 326 DVKNLVLFTERGQFGTLARMLQADP 350
D KN ++ GT+A + +P
Sbjct: 371 DPKNGLIICGYSVEGTMAHSIVNEP 395
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 47/384 (12%)
Query: 4 SVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLL 60
++ + PL G NE S + ++ + L+DCG + + + P + ST+DAV +
Sbjct: 6 NLTIMPL-GAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTSSLPFLDLINLSTVDAVFI 64
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLS 120
+H H GALPY ++ + VF T P + + D + T + + L+
Sbjct: 65 THFHLDHAGALPYLTEKTNFAGKVFMTHPTKAILRWLLNDYIRIINANTEIDFYSEKDLN 124
Query: 121 GKGEGIV--------------VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
+ I+ V+ AGH+LG ++ I D ++Y DY+ +++HL
Sbjct: 125 NCYDKIIAIDYNQTVVVKDFKVSALNAGHVLGAAMFMIENDRVKILYTGDYSTEEDRHLK 184
Query: 167 GTVL-----------------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLR 208
G E+ VLI ++ + PR++RE F ++ +
Sbjct: 185 GADTAWISKYGNMDEKEHSNDETVHHLDVLICESTYGVQCHLPREERERRFTQVVNDIVT 244
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG LLPV + GR ELLLILEDYW H N PIY+ + +++ + +++ M
Sbjct: 245 RGGKCLLPVFALGRAQELLLILEDYWDRNPHLHNIPIYYASALANRCLSIYQAYTHMMNL 304
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
I K +AF KH+ L KS ++ +V+AS L++G S ++F W D
Sbjct: 305 KIKK-------DAFNFKHIRNL--KSVDNHLIKNACVVMASPGMLQSGLSRELFESWCED 355
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
N + GTLA+ + +P
Sbjct: 356 ANNGTVIPGYCVQGTLAKEIMTEP 379
>gi|195145328|ref|XP_002013648.1| GL24247 [Drosophila persimilis]
gi|194102591|gb|EDW24634.1| GL24247 [Drosophila persimilis]
Length = 154
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 18/148 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+F+T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIFATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAP 130
+T+L Y+Q L GKG GI + P
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITP 148
>gi|71656590|ref|XP_816840.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|50363263|gb|AAT75334.1| cleavage polyadenylation specificity factor CPSF100 [Trypanosoma
cruzi]
gi|70881994|gb|EAN94989.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 802
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 172/687 (25%), Positives = 274/687 (39%), Gaps = 106/687 (15%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
P + L+ IDG L+DCGWND FD + L L + AVL S P+ + GALP+ M+
Sbjct: 27 TPFANLIEIDGVRILLDCGWNDEFDVNFLDALMPYLGDVHAVLFSTPELVSCGALPFVME 86
Query: 77 QLGLSAPVFSTEPVYRLGL--------------------------LTMYDQYLSRRSVTR 110
+ V + ++GL +T+ Y + RSVT
Sbjct: 87 HIPTGTCVAAAGSTAKMGLHGVLHPFLYLFPNVKTWRLENGLDFEMTVDKVYSAFRSVTE 146
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
Y + + + P +G +LGG W I +++ Y D++ + L
Sbjct: 147 -PYGGKVTIRHRDAEVECYPIFSGRMLGGHGWLIKYKIDELFYCPDFSLKP-----SYAL 200
Query: 171 ESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK---TLRAGGNVLLPVDSAGRV 223
+ F+ P + I + L R+ E I + TLR G +VL+PV GR
Sbjct: 201 KRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQLNALIREILGTLRNGKDVLIPVSVVGRG 260
Query: 224 LELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
LE+L I+ E NY + F + ++ + + E + D I S N
Sbjct: 261 LEILTIVTHLLTEKGGDNYTVVFASIQAAELVAKASTMTEALLDEIILSERQLFANVVTC 320
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW----ASDVKNLVLFTERGQ 338
K +++ + GPK+ +A +L+ G S ++ + A + +NLV+ T +
Sbjct: 321 KTAEEVLSVA-------GPKICIADGETLDYGVSAELLGHFLQADADERENLVVLTGAPK 373
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 398
T A + A A+ + + R PL EEL Y Q L+ EE KA L A
Sbjct: 374 PHTNAFTMAAAKKGDAIDLRYTIRSPLGKEELEEY-YLQIELEMEEQRKA-LEGGAYEVA 431
Query: 399 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPS----TSVAPMFPFY 454
SL +N+ D +N D + R G V PS S FP
Sbjct: 432 SLEDENS--------DNDNDAGKEDEKQL---RVTQQCTPGLVLPSYMSFVSKHLQFPIL 480
Query: 455 ENNSEWDDFGEVINPDDYIIK---DEDMD-----QAAMHIGGDDGKLDEGSASLILDAK- 505
E + + + DY E+M +A I D+G EG + DA+
Sbjct: 481 ETAASLAN--AMFKKVDYAYGLPISEEMQFLMRRKAPARIYSDEGP--EG-IQMHNDAQA 535
Query: 506 ----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL--KLVLVHGSAEATE 559
PSK N V + D G AD ++++L K+VL+ G+ +
Sbjct: 536 EANIPSKTFVNTAVVSKNSRVFMTDLSGFADAAIMRSLLKSRFSFAKKIVLIRGTVDDHR 595
Query: 560 HLKQHC----LKHVCPHVYTPQIEET-IDVTSDLCAYKVQLSEKLMSNVLFKKL------ 608
L Q C + +V+ P+ + T +++ + + +Y VQL L +N L L
Sbjct: 596 ALYQFCRSEKVMKCGENVFFPRTQRTHLELATHVYSYMVQLDPTL-ANALPSALRRVKES 654
Query: 609 ---GDYEIAWVDAEVGKTENGMLSLLP 632
G +++ WVD G E+ +SL P
Sbjct: 655 RSSGFWDVGWVD---GALESSFVSLTP 678
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 24/320 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRSVT 109
ST+D +L++H H AL Y ++ V+ T P L M D S +
Sbjct: 57 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSSSTS 116
Query: 110 RLTYS--------------QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+S + + G+ P+ AGH+LG ++ I G ++Y
Sbjct: 117 DALFSPLDLSMSMSAIIPVSAHQVITPCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTG 176
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
DY+R +++HL + +RP VLI ++ + R+++E F + +R GG+VL
Sbjct: 177 DYSREEDRHLVKAEVPP-IRPDVLIVESTYGVQTLEGREEKEQRFTTLVHNIIRRGGHVL 235
Query: 215 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
LP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++ F
Sbjct: 236 LPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANVRTRF 295
Query: 273 ETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
RDN F+ KH++ + E A P +VLAS + +G S ++ WA D +N
Sbjct: 296 -AKRDNPFVFKHISNVPQARGWERKIAEGPPCVVLASPGFVTSGPSRELLELWAPDSRNG 354
Query: 331 VLFTERGQFGTLARMLQADP 350
++ T GT+AR + +P
Sbjct: 355 IIVTGYSVEGTMARDILNEP 374
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 172/397 (43%), Gaps = 43/397 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
+ +TPL +L++ L+DCG + +D P +D +L++H
Sbjct: 5 MTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDPEQVDVLLITH 64
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRS------------ 107
H +LPY ++ G +F T P V RL LL Y + + +
Sbjct: 65 FHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRL-LLGDYLKLMMMKKGSGGADKDDNQD 123
Query: 108 --------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
+ + Y Q L+ G+ AGH+LG ++ I G V+Y
Sbjct: 124 VLYTEADLQSCVDKIELIDYHQTIDLN-LPSGLKFHALNAGHVLGAAMFFIEVGGRSVLY 182
Query: 154 AVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 211
DY+ +++HL L + P +LI ++ + R +RE F I + + GG
Sbjct: 183 TGDYSMEEDRHLMAAELPKYHASPDLLIVESTYGVQVHASRAEREARFTGTIERIVTGGG 242
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
L+PV + GR ELLLIL++YW EH + PIY+ + ++S + +++ M I
Sbjct: 243 RCLIPVFALGRAQELLLILDEYWQEHPHLQSIPIYYASKMASRALRVYQTYANMMNARIR 302
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVK 328
+ N F H+ L +++N D GP +V AS L++G S +F WA D K
Sbjct: 303 AQMDLG--NPFHFSHIRNL-KSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWAGDPK 359
Query: 329 NLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 365
N V+ TLA+ + + PK V RR PL
Sbjct: 360 NGVMLAGYAVEHTLAKEIMSQ--PKEVVTLEGRRQPL 394
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 170/371 (45%), Gaps = 32/371 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVS-IDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVL 59
T+ ++ PL G +E S +V+ G + DCG + + P + + +D +L
Sbjct: 8 TAARILPL-GAGSEVGRSCVVTKFQGVTVMFDCGVHPAYTGISSLPFFDLIDPTEVDVIL 66
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSV 108
++H H GALPY ++ G V+ T P R+ ++ + + + +
Sbjct: 67 VTHFHLDHAGALPYFTERSGFKGKVYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKEL 126
Query: 109 TR-------LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
++ + Y Q L + I + + AGH+LG ++ + + ++Y DY+R +
Sbjct: 127 SQCYDRIIPIDYGQEITL----KNITIIAYNAGHVLGAAMFLVKNENISLLYTGDYSREE 182
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
++HL V+ ++ Y +Q ++ F +S ++ GG LLPV + G
Sbjct: 183 DRHLKAAVIPPMPIDILISESTYGVQCHQSKEEREHRFITGVSDVVKRGGKCLLPVFALG 242
Query: 222 RVLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
R ELLLIL+++W A L PI + + ++ + +++L M D I E S N
Sbjct: 243 RAQELLLILDEFWEARKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEIS--NP 300
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KHV + N ++ GP +++AS L+ G S D+F W D +N +
Sbjct: 301 FHFKHVQNIKNIEAYEDR--GPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVE 358
Query: 340 GTLARMLQADP 350
GTLA+ L +P
Sbjct: 359 GTLAKDLLCEP 369
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L++ LS++ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 99 LIEKLSRINEIIDCVIISHFHMDHIGALPFFTEILKYRGTIIMSYPTKALSPILLLDGCR 158
Query: 101 ---------------QYLSRRSVTRLTYSQN--------------YHLSGKGEGI----- 126
+ L+ +S L Y+ + Y GK G+
Sbjct: 159 VADLKWEKKNFERQIKLLNEKSDELLNYNISSLKKDPWNISEEHIYSCIGKVVGLQINET 218
Query: 127 ------VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
+ P+ AGH+LG ++KI + VIY DYN +KHL T + S + P + I
Sbjct: 219 YEMGNMSITPYYAGHVLGACIYKIEVNNFSVIYTGDYNTVPDKHLGSTKIPS-LNPEIFI 277
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW + +
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWRKMKI 337
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
NYPIYF ++ + Y + + W+ + T + N F +++ +N +N
Sbjct: 338 NYPIYFGCGLTENANKYYRIYSSWVN---SNCVSTDKKNLFDFANISPFVNNYLDENR-- 392
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G S F WA NL++ GT+ L
Sbjct: 393 -PMVLFATPGMLHTGLSLKAFKAWAGSSNNLIVLPGYCVQGTVGHKL 438
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-----LKHVC 570
+ V C +I++ + AD I+ ++ HV P ++ VHG E L +H + +C
Sbjct: 453 LNVACRIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKNGMEKLSKHISSNYLINSLC 512
Query: 571 P 571
P
Sbjct: 513 P 513
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 159/347 (45%), Gaps = 39/347 (11%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
+L + L+ V +TID+ ++SH H+GALP+ +++G S PV+ T P L L + D
Sbjct: 109 ALKKALNNVTNTIDSAIISHFHIDHVGALPFLTEEIGYSGPVYMTYPTKALSPLLLRDSG 168
Query: 101 ------------QYLSRRSVTRLTYSQNYHLSG-----------------KGEGIVVAPH 131
+ RR V Y + K EG+ V+P
Sbjct: 169 IAAKTASVKSLLNFDKRRKVEERPDPWGYSFNSVAECMKRSIPLQLRSAEKVEGLTVSPF 228
Query: 132 VAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD-AYNALHNQ 190
AGH+LG ++ DG V+Y D+N +KHL + S + P VLI + Y Q
Sbjct: 229 YAGHVLGAAMFLAESDGFKVLYTGDFNTVPDKHLGPAKVPS-LEPDVLICETTYATFVRQ 287
Query: 191 PPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVS 250
+ + + TL GG VL+PV + GR EL +IL +YW SL +PIYF +S
Sbjct: 288 SKKATEVELCNLVHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSLLFPIYFGGGLS 347
Query: 251 SSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 310
+Y K W ++ + ++N F ++++ L ++S L++ + P ++ A+
Sbjct: 348 EKATNYYKLHSSWTDNN---NISKLKENPFAMENL-LQFDQSFLND--NRPMVLFATPGM 401
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 357
+ G S W+S+ KNL+L GT+ L + + K+
Sbjct: 402 VHTGLSLKACKIWSSNPKNLILIPGYCVQGTVGNKLISGTKGREYKI 448
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 495 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554
+G I A + +N + +KC + ++ + AD I ++ HV P +V VHG
Sbjct: 442 KGREYKIYTATTICIKTNTGVINIKCKVKYLSFSAHADSPGILKLIKHVRPKNIVFVHGE 501
Query: 555 AEATEHLKQHCLKHVCPHVYTPQIEETI 582
++ + +H + VY P ET+
Sbjct: 502 LDSMKKFSKHITSTLNIPVYYPANGETV 529
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 157/345 (45%), Gaps = 33/345 (9%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
++DCG + ++ P + ID +L++H H+ A+P+ + Q S P F T
Sbjct: 37 MLDCGIHPAYENFGGLPFIDAIDPAKIDVLLITHFHIDHITAVPWFLTQTNFSGPCFMTH 96
Query: 89 PVYRLG--LLTMYDQYLSRRS-------------VTRLTYSQNYHLSGKGEGIVVAPHVA 133
+ LL Y R S V + + NYH + +GI + + A
Sbjct: 97 TTKTISKTLLVDYVGVSGRGSEEPNLFTRADVANVQNMITAVNYHQTVTHQGIKMTCYPA 156
Query: 134 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES-----FVRPAVLITDAYNALH 188
GH+LG +W + DG V+Y D++ E+HL G + +RP VLI ++ + L
Sbjct: 157 GHVLGACMWLVEIDGVKVLYTGDFSLENERHLQGAEIPKSLSGEIIRPDVLIMESTHGLA 216
Query: 189 NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYF 245
R RE F D ++K ++ GG L+P+ + GR ELL+IL++YW H PIY+
Sbjct: 217 RIESRVDREYRFIDNVTKIIKRGGRCLIPIFALGRAQELLIILDEYWESHPEYNGVPIYY 276
Query: 246 LTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVL 305
+ ++ I +F + + + F +V I + D++ P +VL
Sbjct: 277 GSNLAKQAIAAYNAFYQDHNSRVVTA-----KGKFEFSYVK-YIRDYDFDDSL--PCVVL 328
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S A L+ G S IF W S+ N ++ GTL ++L +P
Sbjct: 329 CSPAMLQNGMSRKIFEAWCSNSVNGLIIPGYIVDGTLPQVLMKNP 373
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 154/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L++ LS++ ID V++SH H+GALP+ + L + + P L + D
Sbjct: 99 LIKNLSRINEIIDCVIISHFHMDHIGALPFFTEILKYRGTIIMSYPTKALSPTLLLDGCR 158
Query: 101 ---------------QYLSRRSVTRLTYSQN--------------YHLSGKGEGI----- 126
+ L+ +S L Y+ + Y GK G+
Sbjct: 159 VADIKWEKQNFERQIKLLNEKSDELLNYNISSLKKDPWNISEDHIYSCIGKVVGLQINET 218
Query: 127 ------VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
+ P+ AGH+LG ++KI + VIY DYN +KHL T + S P + I
Sbjct: 219 FEMGNMSITPYYAGHVLGACIFKIEVNNFSVIYTGDYNTVPDKHLGSTKIPSLT-PEIFI 277
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW + +
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWRKMKI 337
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
NYPIYF ++ + Y + + W+ S T + N F +++ +N +N
Sbjct: 338 NYPIYFGCGLTENANKYYRIYSSWVNSSCV---STDKKNLFDFANISPFVNNYLGENR-- 392
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G S F WA KNL++ GT+ L
Sbjct: 393 -PMVLFATPGMLHTGLSLKAFKAWAGSSKNLIVLPGYCVQGTVGHKL 438
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VC 570
+ + C +I++ + AD I+ ++ HV P ++ VHG E L +H H +C
Sbjct: 453 MNIACKIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKNGMEKLSKHISSHYLINSLC 512
Query: 571 P 571
P
Sbjct: 513 P 513
>gi|350646480|emb|CCD58879.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 729
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 202/475 (42%), Gaps = 114/475 (24%)
Query: 350 PPPKAVKVTMSRRVPLVGEELIAYE---------------------EEQTRLKKEEALKA 388
P P A +T S P V E ++ + EE T ++K ++L
Sbjct: 266 PMPSASDITHSDVSPQVAEGILEKQPSCNSELENESTCGSNRPYGSEEGTHIEKSKSLSL 325
Query: 389 SL-VKEEESKASLGPDNNLSGDP-MVIDANNANASADVVEPHGGRYR---DILID----- 438
+L V + SK ++ P N P I N + GR++ DI
Sbjct: 326 TLSVPRDHSKKTIVPSNTTRLFPKTCIPLNMEQFGVTNLHLTSGRHQAGYDIYPGLHNQA 385
Query: 439 --GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK- 492
F + +FP E WD++G ++P+ + + QAA+ I D K
Sbjct: 386 GGQFFRVAKRTQLLFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKT 445
Query: 493 ----LDEGSASL--------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGR 534
+ G AS +LD+ ++ V++ L + ++C ++F+DYEGR+DG
Sbjct: 446 TSDIVSSGFASTSILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGE 504
Query: 535 SIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAY 591
++K IL + P +++LV +A A +HL +C + +++ P E ++ T + Y
Sbjct: 505 AMKRILIGLRPQEIILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIY 564
Query: 592 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVG------------------------------ 621
+ ++ + L+S++ F K+ DYE+AWV+A V
Sbjct: 565 QARMKDSLVSSLKFTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDV 624
Query: 622 --KTENGM---------LSLLPI-STPAPP---HKSVLVGDLKMADLKPFLSSKGIQVEF 666
T N + LP+ S P P HK+V V + K++DLK L S+G+ EF
Sbjct: 625 EMSTGNNLELRSRTPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEF 684
Query: 667 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G L V I++ S ++++EG LC Y+++R LY QF +L
Sbjct: 685 VSGILVVDNCVAIKR----------SEAGKLLLEGLLCGTYFEVRRILYQQFAIL 729
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 182 DAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
D N L+ QP R+ R E + + K+LR GGNVL+ VD+AGR LE+ LE W
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+ Y + L YV+ + +D+ KS +EWM + + +SFE R N F +H+ L +LD A
Sbjct: 62 LMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRSNPFHFRHMQLCHTLEQLD-A 120
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 121 VSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 159
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 35/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
S++D +L+SH H LPY + + VF T + + D S S
Sbjct: 79 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 138
Query: 109 TRLT-YSQNYHLSGKGE-------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS + I + P AGH+LG ++ I+ G ++++
Sbjct: 139 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFVISIAGLNILFT 198
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 199 GDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNRGGRV 258
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++I +
Sbjct: 259 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNENIKRV 318
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + ++V + N D+ G ++LAS L+ G S ++
Sbjct: 319 FRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGTSREL 376
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA + +N V+ T GT+ + + +P
Sbjct: 377 LERWAPNERNGVIMTGYSVEGTMGKQILNEP 407
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 154/362 (42%), Gaps = 66/362 (18%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVAST----------IDAVLLSHPDTLHLGALPYAMKQLGL 80
+ DCG + F P ++ S ID V++SH H GALP+ +++G
Sbjct: 29 MFDCGMHMGFKDERKYPDFRLISATLDPLIINEYIDLVIISHYHLDHCGALPFFTEKIGY 88
Query: 81 SAPVFSTEP-----------------------------------VYR--LGLLTMYDQYL 103
P+ T P VY G T+ D +
Sbjct: 89 KGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNADVVPPNETVYNNEYGFFTVSDVWS 148
Query: 104 SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
V + Q +SG I + P+ AGH+LG +++ + E ++Y D+N +++
Sbjct: 149 CMEKVKAIQLHQTIVISG----IKITPYYAGHVLGASMFHVQVSDESIVYTGDFNMVRDR 204
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 222
HL G L + P++LI+++ A + +P R+ E F + + L+ GG VL+PV + GR
Sbjct: 205 HL-GPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMVYSCLKRGGKVLIPVFAIGR 263
Query: 223 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
EL ++LE YW + +PI+F ++ Y + F W + DN F
Sbjct: 264 AQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTNWTNTPLA-------DNIFTF 316
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQF 339
HV L +KS L GP ++ A+ L G S F WA D NL + F G
Sbjct: 317 PHV-LPYDKSIL--TLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNLTIIPGFCVSGTI 373
Query: 340 GT 341
G+
Sbjct: 374 GS 375
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
G + + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +LI
Sbjct: 45 GVNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLI 103
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
T++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L
Sbjct: 104 TESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL 163
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 164 KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP-- 218
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 219 GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|385305954|gb|EIF49896.1| mrna cleavage and polyadenylation specificity factor complex
subunit ysh1 [Dekkera bruxellensis AWRI1499]
Length = 295
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 6/238 (2%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+YH + + +GI AGH+LG ++ + G ++ DY+R +++HL+ + V
Sbjct: 54 DYHSTIEVDGIRFTAFPAGHVLGAAMFLVEMGGLKFLFTGDYSREEDRHLSSAEVPD-VT 112
Query: 176 PAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LI ++ PR +RE I TL+ GG LLPV + GR E+LLIL++YW
Sbjct: 113 PDLLIVESTFGTATHVPRLERENKLTTVIHSTLQQGGRCLLPVFALGRAQEILLILDEYW 172
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H N PIY+ + ++ + + ++ M DSI K F + +N F K++ + +
Sbjct: 173 QRHKDLQNVPIYYASSLAKKCMAVYERYINMMNDSIRKKFTETNENPFHFKYIKNVAHAD 232
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+D+ P +++AS L+ G S + +W D +N V+ T GT+A+ L +P
Sbjct: 233 RIDDL--NPCVMIASPGMLQNGVSRQLLEKWCPDPRNTVIMTGYSVDGTMAKKLLTEP 288
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 154/362 (42%), Gaps = 66/362 (18%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVAST----------IDAVLLSHPDTLHLGALPYAMKQLGL 80
+ DCG + F P ++ S ID V++SH H GALP+ +++G
Sbjct: 31 MFDCGMHMGFKDERKYPDFRLISATLDPLIINEYIDLVIISHYHLDHCGALPFFTEKIGY 90
Query: 81 SAPVFSTEP-----------------------------------VYR--LGLLTMYDQYL 103
P+ T P VY G T+ D +
Sbjct: 91 KGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNVDVAPPNETVYNNEYGFFTVSDVWS 150
Query: 104 SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
V + Q +SG I + P+ AGH+LG +++ + E ++Y D+N +++
Sbjct: 151 CMEKVKAIQLHQTIVISG----IKITPYYAGHVLGASMFHVQVSDESIVYTGDFNMVRDR 206
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 222
HL G L + P++LI+++ A + +P R+ E F + + L+ GG VL+PV + GR
Sbjct: 207 HL-GPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMVYSCLKRGGKVLIPVFAIGR 265
Query: 223 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
EL ++LE YW + +PI+F ++ Y + F W + DN F
Sbjct: 266 AQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTNWTNTPLA-------DNIFTF 318
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQF 339
HV L +KS L GP ++ A+ L G S F WA D NL + F G
Sbjct: 319 PHV-LPYDKSIL--TLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNLTIIPGFCVSGTI 375
Query: 340 GT 341
G+
Sbjct: 376 GS 377
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Query: 121 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
G + + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +LI
Sbjct: 45 GVNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLI 103
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
T++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L
Sbjct: 104 TESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL 163
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 164 KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP-- 218
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 219 GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 164/368 (44%), Gaps = 40/368 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
++V G ++D G + ++ P ST+D +L++H H +LPY + +
Sbjct: 43 HIVQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLITHFHQDHSASLPYVLAKT 102
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRS-------------VTRLTYSQN--------- 116
VF T P + T D + V++L Q+
Sbjct: 103 DFHGKVFMTHPTKAIYKWTTQDAVRVHNTHTPASSTSGTDGYVSQLYTEQDILSTLPMIQ 162
Query: 117 ---YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF 173
++ + GI P+ AGH+LG ++ I G ++++ DY+R ++HL +
Sbjct: 163 TISFNTTHSHNGIRFTPYPAGHVLGACMYHIEIAGLNILFTGDYSREIDRHLIPATIPPN 222
Query: 174 VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
V+ LIT++ + + PRQ+RE +++ L GG VL+P + G ELLLILED
Sbjct: 223 VKIDCLITESTFGISTREPRQERENQLMKSVTNILNRGGRVLMPTTAVGNTQELLLILED 282
Query: 233 YWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------FLL 282
YW H +PIY+ + ++ + +++++ M D I F+ S A +
Sbjct: 283 YWQRHEEYRRFPIYYASGLARKVMVVYQTYVDNMNDRIKAKFQASAAAAGDGGAAGPWDF 342
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
+ V L ++ G +VLAS L+ G S + WA D KN V+ T GT+
Sbjct: 343 QFVRALKGVDRFEDV--GGSVVLASPGMLQNGPSRALLERWAPDPKNGVVITGYSVEGTM 400
Query: 343 ARMLQADP 350
A+ + +P
Sbjct: 401 AKQIMLEP 408
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 37/329 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYR-----------LGLLTM 98
S +D +L+SH H +LPY M+Q VF +T+ +YR +G M
Sbjct: 62 SKVDILLISHFHLDHAASLPYVMQQTTFKGRVFMTQATKAIYRWLLQDFVRVTSIGTTKM 121
Query: 99 ----------YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 148
Y +S R+ + +YH + + EGI + AGH+LG ++ I G
Sbjct: 122 EGGEGQSSNLYTADDIMKSFDRIE-TIDYHSTMEIEGIKFTAYHAGHVLGACMYFIEIGG 180
Query: 149 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA---YNALHNQPPRQQREMFQDAISK 205
V++ DY+R + +HL+ + V+P +LI+++ L ++ +++ + I
Sbjct: 181 LKVLFTGDYSREENRHLHAAEIPP-VKPDILISESTFGTGTLESKADLEKK--LTNHIHA 237
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYW--AEHSLNYPIYFLTYVSSSTIDYVKSFLEW 263
TL GG VLLPV + G ELLLIL++YW E N +Y+ + ++ + +++
Sbjct: 238 TLTKGGRVLLPVFALGNTQELLLILDEYWNNNEDLQNINVYYASSLAKKCMAVYETYTSI 297
Query: 264 MGDSITKSFETS--RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I S +S + N F K++ + + + + GP +V+A+ L+AG S +
Sbjct: 298 MNDKIRLSASSSGHKSNPFDFKYIKSIRDLGKFQDM--GPSVVIAAPGMLQAGISRQLLE 355
Query: 322 EWASDVKNLVLFTERGQFGTLARMLQADP 350
+WA D KNLV+ T GT+A+ L +P
Sbjct: 356 KWAPDPKNLVILTGYSVEGTMAKELLKEP 384
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L+ L ++ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 99 LINNLKRINEMIDCVIISHFHMDHIGALPFFTEILKYRGTILMSYPTKALSPILLLDGCR 158
Query: 101 ---------------QYLSRRSVTRLTYS--------------QNYHLSGKGEGI----- 126
+ L+ +S L Y+ Q Y GK G+
Sbjct: 159 VADLKWEKQNFERQIKLLNEKSDELLNYNISSLKKDPWNISEEQIYSCIGKVVGLQINET 218
Query: 127 ------VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
+ P+ AGH+LG ++KI + VIY DYN +KHL T + S P + I
Sbjct: 219 FQMGNMSITPYYAGHVLGACIFKIEVNNFSVIYTGDYNTVPDKHLGSTKIPSLT-PEIFI 277
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW + +
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWKKMKI 337
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
NYPIYF ++ + Y + + W+ S T + N F +++ +N +N
Sbjct: 338 NYPIYFGCGLTENANKYYRIYSSWVNSSCV---STDKKNLFDFANISPFVNSYLGENR-- 392
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G S F W+ KNL++ GT+ L
Sbjct: 393 -PMVLFATPGMLHTGLSLKAFKAWSGCSKNLIVLPGYCVQGTVGHKL 438
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VC 570
+ V C +I++ + AD I+ ++ HV P ++ VHG E L +H H +C
Sbjct: 453 LNVACRIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKHGMEKLSKHIASHYLINSLC 512
Query: 571 P 571
P
Sbjct: 513 P 513
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 52 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 110
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 111 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 170
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 171 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 225
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 226 TPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
S++D +L+SH H LPY + + VF T + + D S S
Sbjct: 75 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKGE-------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNENIKRV 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + ++V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA + +N ++ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPNERNGIIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|256077072|ref|XP_002574832.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 1063
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 182 DAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
D N L+ QP R+ R E + + K+LR GGNVL+ VD+AGR LE+ LE W
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+ Y + L YV+ + +D+ KS +EWM + + +SFE R N F +H+ L +LD A
Sbjct: 62 LMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRSNPFHFRHMQLCHTLEQLD-A 120
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 121 VSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 159
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 81/335 (24%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK-----LDEGSASL- 500
+FP E WD++G ++P+ + + QAA+ I D K + G AS
Sbjct: 399 LFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKTTSDIVSSGFASTS 458
Query: 501 -------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 547
+LD+ ++ V++ L + ++C ++F+DYEGR+DG ++K IL + P +
Sbjct: 459 ILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGEAMKRILIGLRPQE 517
Query: 548 LVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
++LV +A A +HL +C + +++ P E ++ T + Y+ ++ + L+S++
Sbjct: 518 IILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIYQARMKDSLVSSLK 577
Query: 605 FKKLGDYEIAWVDAEVG--------------------------------KTENGM----- 627
F K+ DYE+AWV+A V T N +
Sbjct: 578 FTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDVEMSTGNNLELRSR 637
Query: 628 ----LSLLPI-STPAPP---HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTI 679
LP+ S P P HK+V V + K++DLK L S+G+ EF G L V I
Sbjct: 638 TPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEFVSGILVVDNCVAI 697
Query: 680 RKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 714
++ S ++++EG LC Y++ ++
Sbjct: 698 KR----------SEAGKLLLEGLLCGTYFETFDFM 722
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 37/344 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D S S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 262 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 321
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTSDL 588
LKQ + + Y P ET+ + + L
Sbjct: 322 LKQKIEQELRVSCYMPANGETVTLPTSL 349
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 26 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 84
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 85 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 144
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 145 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 199
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 200 TPGMLHAGQSLQIFRKWAGNEKNMVIM 226
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 159/332 (47%), Gaps = 40/332 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
S++DA+L++H H +L Y M+ VF T P VYR
Sbjct: 82 SSVDAILITHFHLDHAASLTYIMENTNFKEGHGKVFMTHPTKAVYRFLMQDFVRMSTIGT 141
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L S S+ + Y Q L + + AGH+LG ++ I G V
Sbjct: 142 DSELFNEEQMIASYDSINAIDYHQEISLGC----LRFTSYPAGHVLGAAMFLIEISGIRV 197
Query: 152 IYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPR-QQREMFQDAISKTLRA 209
+Y DY+ +++HL + ++ +P V+I ++ + + PR ++ E F + L+
Sbjct: 198 LYTGDYSTEEDRHLIPARVPNWNEKPDVMICESTYGVQSLEPRFEKEERFTTLVQSILKR 257
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YWA H LN PIY+++ +++ + ++F+ M D
Sbjct: 258 GGRVLMPVFALGRAQELLLILDEYWANHPELNQIPIYYISNLAAKCMKVYQTFIHGMNDQ 317
Query: 268 ITKSFETS-------RDNAFLLK--HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 318
I + F R+ + K +VT L + D+ GP +V+AS +++G S +
Sbjct: 318 IKRKFNQGINPWTFYREGKGVFKKGYVTNLKAIDKFDDR--GPCVVMASPGFMQSGVSRE 375
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ WA D +N +L T GT+AR + +P
Sbjct: 376 LLERWAPDRRNALLVTGYSIEGTMAREMLKEP 407
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 37/344 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D S S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 23 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 81
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 82 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 141
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 142 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 196
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 197 TPGMLHAGQSLQIFRKWAGNEKNMVIM 223
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 37/344 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + VF T + + D S S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVEHGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 262 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEF 321
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTSDL 588
LKQ + + Y P ET+ + + L
Sbjct: 322 LKQKIEQELRVSCYMPANGETVTLPTSL 349
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
S++D +L+SH H LPY + + VF T + + D S S
Sbjct: 75 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKGE-------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNENIKRV 314
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + ++V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA + +N ++ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPNERNGIIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|344229479|gb|EGV61364.1| hypothetical protein CANTEDRAFT_98614 [Candida tenuis ATCC 10573]
Length = 943
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 169/387 (43%), Gaps = 61/387 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDG-FNFLIDCGWN--DHFDPSLLQPLSKVASTIDA 57
M T +TP G + + L++IDG N L D WN DH D LQ K +++
Sbjct: 1 MFTFTLLTPADG---HSSKASLMTIDGDVNILADISWNGKDHHDLDYLQDTLK---SVNL 54
Query: 58 VLLSHPDTLHLGA---LPYAMKQLGLSAPVFSTEPVYRLGLLTMY--------------- 99
VLLSH +G L +L + V++T V +LG ++
Sbjct: 55 VLLSHSTPEFIGGYALLCLKFPELMKNIKVYATSAVSQLGRVSTVELYRSVGLIGPLKDA 114
Query: 100 -------DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
D+Y R V L Y Y + E + + P+ +GH LGG+ W + + E +I
Sbjct: 115 VLEVSDVDEYFDR--VISLKY---YQSTNALERLAITPYNSGHTLGGSFWLLQRKLEKII 169
Query: 153 YAVDYNRRKE---------KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI 203
YA +N K+ G L VRP L+T + N +++ E F +
Sbjct: 170 YAPSWNHSKDSFLSAASFLSSSTGNPLSQLVRPTALVT-GTDVGSNLSHKKRSEKFLQLV 228
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW 263
TL GG VLLP +GR LELL +++++ S P+ FL+Y ++ + Y + LEW
Sbjct: 229 DGTLANGGTVLLPTTISGRFLELLHLVDEHL--QSAPIPVLFLSYSGTNVLRYATNLLEW 286
Query: 264 MGDSITKSFETSRD---NAFLLKHVTLLINKSELDNAP------DGPKLVLASMASLEAG 314
M S++K E + N H +K +L + P GPK+V S L +G
Sbjct: 287 MSPSLSKELENANSIVTNTGNRNHFPFDPSKVDLVSTPYELTQMAGPKVVFTSGVDLNSG 346
Query: 315 -FSHDIFVEWASDVKNLVLFTERGQFG 340
S + +D K ++ TE+ FG
Sbjct: 347 ELSSEALRVLCNDEKTTIILTEKTHFG 373
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 33/327 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------- 96
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 150 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 209
Query: 97 ---------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
+Y +S R+ + +YH + + +GI + AGH+LG ++ I
Sbjct: 210 EDGGGGEGSNLYTDDDIMKSFDRIE-TIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIG 268
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
G V++ DY+R + +HL+ + ++P +LI+++ PR + E I T
Sbjct: 269 GLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRIELERKLTTHIHAT 327
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++ M
Sbjct: 328 IAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIM 387
Query: 265 GDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
D I S +S + N F K++ + + S+ + GP +V+A+ L+AG S + +W
Sbjct: 388 NDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLLEKW 445
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADP 350
A D KNLV+ T GT+A+ L +P
Sbjct: 446 APDGKNLVILTGYSVEGTMAKELLKEP 472
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 156/362 (43%), Gaps = 39/362 (10%)
Query: 22 LVSIDGFNFLIDCG----WNDHFD-PSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG ++DH P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDHRHYPDFARALAAWGAPDFTTAISCVVITHFHLDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------QY------LSRRSVTRLT 112
PY + G P++ T P L + D QY + V +
Sbjct: 80 PYFTEICGYHGPIYMTYPTKALAPFMLEDYRKVTMDQRGEEEQYSYEDILRCMKKVIPMD 139
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTIQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDH 196
Query: 173 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
++ +LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+
Sbjct: 197 -LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCMLLD 255
Query: 232 DYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 291
DYW L PIYF ++ Y K + W I S N F KHV +
Sbjct: 256 DYWERMDLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHAVH--NPFDFKHVCHF-ER 312
Query: 292 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
S ++N GP ++ A+ + GFS + F +WA KNL+ GT+ L P
Sbjct: 313 SFINNP--GPCVLFATPGMISGGFSLEAFKKWAPSEKNLITLPGYCVSGTIGHKLMCGKP 370
Query: 352 PK 353
+
Sbjct: 371 TR 372
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 33/327 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------- 96
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 122
Query: 97 ---------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
+Y +S R+ + +YH + + +GI + AGH+LG ++ I
Sbjct: 123 EDGGGGEGSNLYTDDDIMKSFDRIE-TIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIG 181
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
G V++ DY+R + +HL+ + ++P +LI+++ PR + E I T
Sbjct: 182 GLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRIELERKLTTHIHAT 240
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++ M
Sbjct: 241 IAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIM 300
Query: 265 GDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
D I S +S + N F K++ + + S+ + GP +V+A+ L+AG S + +W
Sbjct: 301 NDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLLEKW 358
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADP 350
A D KNLV+ T GT+A+ L +P
Sbjct: 359 APDGKNLVILTGYSVEGTMAKELLKEP 385
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 169/370 (45%), Gaps = 32/370 (8%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLSKVAS--TID 56
G+ +++ PL +++ G N ++DCG + H + +L PL + +I+
Sbjct: 18 GSVLEIKPLGAGREVGRSCFVLKYMGHNIMLDCGVHPAKKHGEDAL--PLFEYGDVDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQY---------LSR 105
+ ++H H ALPY + + + T P + L + Q +S
Sbjct: 76 LLCVTHFHVDHCAALPYLVLERNYKGKILMTPPTKEIFGELFKEFHQMSSTIQPPKPVSP 135
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
+ V + +H + G+ + AGH+LG ++ + +G ++Y D++ ++H+
Sbjct: 136 KEVLERIDTIKFHEMQEFNGMKIWCFNAGHILGAAMFCLEINGVKILYTGDFSGESDRHM 195
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 224
+ + F V+I ++ + +Q PR RE F I + L+ GG L+PV S GR
Sbjct: 196 HSAEVPPF-EIDVMICESTYGIMDQEPRVDRENRFVKQIVEILKRGGKCLIPVFSLGRAQ 254
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
E LILE+YW H Y I+F + ++ + Y + + +M + K + AF
Sbjct: 255 EFELILEEYWQSHKELWAYSIFFFSSIAKKCMTYFEKYTSFMNQELRK----RKRQAFNF 310
Query: 283 KHV---TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
K + + ++ S +DN P +VLAS L+ GFS +F W +D N V+
Sbjct: 311 KFIRDGSSSVDDSTIDNH---PCVVLASPGMLQDGFSRTLFERWCTDKNNGVIIPGYCVE 367
Query: 340 GTLARMLQAD 349
GTLA+ + D
Sbjct: 368 GTLAKQIIND 377
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 168/357 (47%), Gaps = 31/357 (8%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + DH D S + +T+ ++++H H+GALPY
Sbjct: 52 VVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFHLDHIGALPYF 111
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRSVTRLTYSQNYHLSG----------- 121
+ G + P++ T P L +T+ Y + + R ++ ++ +
Sbjct: 112 TEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECLKKVVPVDLKQ 171
Query: 122 ---KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG ++ ++Y DYN ++HL ++ ++ +
Sbjct: 172 TIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-MQLDL 230
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRV-LELLLILEDYWAE 236
LIT++ A + + RE F A+ L +GG VL+P + GR EL ++L+DYW
Sbjct: 231 LITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQQELCVLLDDYWER 290
Query: 237 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296
+L +PIY ++ Y K + W + +++ T NAF K+V ++S +D
Sbjct: 291 MNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTR--NAFDFKNVQKF-DRSMID- 346
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
AP GP ++ A+ + +GFS ++F WA NL+ GT+ L + P K
Sbjct: 347 AP-GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTK 402
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 128/234 (54%), Gaps = 8/234 (3%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
N+H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++
Sbjct: 138 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IK 196
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 197 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 256
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 257 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMD 314
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA++L
Sbjct: 315 HFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKIL 366
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 32/371 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVS-IDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVL 59
T+ ++ PL G +E S +V+ G + DCG + + P + + ID +L
Sbjct: 8 TAARILPL-GAGSEVGRSCVVTKFRGVTVMFDCGVHPAYTGVSSLPFFDLIDPAEIDVIL 66
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQYLSRRSV 108
++H H GALPY ++ G ++ T P R+ ++ + + + +
Sbjct: 67 VTHFHLDHAGALPYFTERSGFKGKIYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKEL 126
Query: 109 TR-------LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + Y Q L + I + + AGH+LG ++ + + ++Y DY+R +
Sbjct: 127 AQCYDKIIPIDYGQEIPL----KNITIIAYNAGHVLGAAMFLVKNEDISLLYTGDYSREE 182
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
++HL V+ ++ Y +Q ++ F +S ++ GG LLPV + G
Sbjct: 183 DRHLKAAVIPPMPIDILISESTYGVQCHQSKEERETRFITGVSDVVKRGGKCLLPVFALG 242
Query: 222 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 279
R ELLLIL+++W PI + + ++ + +++L M D I E S N
Sbjct: 243 RAQELLLILDEFWDSRKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEIS--NP 300
Query: 280 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 339
F KHV + N ++ GP +++AS L+ G S D+F W D +N +
Sbjct: 301 FHFKHVQSIKNIEAYEDR--GPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVE 358
Query: 340 GTLARMLQADP 350
GTLA+ L +P
Sbjct: 359 GTLAKDLLCEP 369
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 37/344 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H ALPY + + +F T + + D S S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRIFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLISAEVPKGIKIDVLIAESTFGISSSPPRLERETALMKSVTSILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFL------------TYVSSSTIDYVKS 259
L+PV + GR ELLLIL++YW+ H PI+++ TY+ + + +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPDLQKVPIFYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 260 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E M ++ K +++ + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRERMAEAEAKGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 363
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 145/334 (43%), Gaps = 43/334 (12%)
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL---------GLLT--- 97
K ID VL+SH H+GALPY + P++ T P L ++T
Sbjct: 68 KWDQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKVITESQ 127
Query: 98 ---MYDQYLSRRSVTRLTYSQNYHLSGKGE---------------------GIVVAPHVA 133
D + + ++ Y L E GI + P+ A
Sbjct: 128 KKEFTDDSIPQTPAQKIINDSRYPLIYTQENIQKCFQKAKTIQLLETIDVNGIKIKPYYA 187
Query: 134 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPP 192
GH+LG ++ I V+Y D++ ++HL +E V+P +LI++ Y +
Sbjct: 188 GHVLGACMFMIEYRNVKVVYTGDFHSNADRHLGAAWIEK-VKPDLLISECTYGTIIRDSK 246
Query: 193 RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSS 252
R + + F I +T+ GG VL+PV + GR EL ++LE YW P+YF +
Sbjct: 247 RAREKNFLKQIQETIDQGGKVLIPVFALGRAQELCILLETYWQRTQSQVPVYFAAGMIEK 306
Query: 253 TIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLE 312
Y K F+ W + I S+ T DN F K++ ++S + +GP ++ A+ L
Sbjct: 307 ANFYYKLFVNWTNEKIKSSYLT--DNMFDFKYIKPF-SRSLI--KTNGPMVLFATPGMLH 361
Query: 313 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
AG S +F EW D KN ++ GTL +L
Sbjct: 362 AGLSMQVFKEWCYDEKNTLIIPGYCVAGTLGCVL 395
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 44/377 (11%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I + DCG +ND D + + TID V++SH H GALPY
Sbjct: 13 IVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISHFHLDHCGALPYF 72
Query: 75 MKQLGLSAPVFSTEPVYRL----------------------GLLTMYDQYLSRRSVTRLT 112
+ G P++ T P + G + D + V L
Sbjct: 73 TEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVDRKGDNLNQGFFSSEDVKNCIKKVQPLN 132
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD---GEDVIYAVDYNRRKEKHLNGTV 169
Q L + E + P+ AGH+LG ++ + KD G V+Y DYN ++HL
Sbjct: 133 LHQTIILDDELE---IKPYYAGHVLGAAMFYV-KDLATGASVVYTGDYNMTADRHLGSAT 188
Query: 170 LESFVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
++ RP +LIT+ A + + ++R+ + + G VL+PV + GRV EL
Sbjct: 189 IDR-CRPDLLITETTYATTIRDSKSSRERDFCKQVYDTVVNKKGKVLIPVFALGRVQELC 247
Query: 228 LILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
++LE YW +L + PIYF + Y + ++ W + I + + N F ++
Sbjct: 248 ILLETYWERKNLGKSVPIYFSAGMVEKANYYYQLYINWTNEKIKTTLFDQKRNLFNFSNI 307
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
+ +DN GP ++ A+ L AG S ++F +WA N V+ GT+
Sbjct: 308 QSF-ERFLMDNP--GPMVLFATPGMLHAGMSLEVFKKWAPGENNKVILPGYCVEGTVGNK 364
Query: 346 LQADPPPKAVKVTMSRR 362
+ + K+ K+ + R
Sbjct: 365 VLRNKDLKSSKIEIDSR 381
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++L+ +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLKTFWERMNLKVPIYFS 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLF 333
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 160/327 (48%), Gaps = 33/327 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------- 96
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 63 SKVDILLISHFHVDHSASLPYIMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGSSRA 122
Query: 97 ---------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
+Y +S R+ + +YH + + +GI + AGH+LG ++ I
Sbjct: 123 EAGGKDEGSNLYTDDDIMKSFDRIE-TIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIG 181
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
G V++ DY+R + +HL+ + ++P +LI+++ PR + E I T
Sbjct: 182 GLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRVELERKLTTHIHAT 240
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++ M
Sbjct: 241 VTKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIM 300
Query: 265 GDSITKSFET-SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
D I S + + N F LK + + + S+ + GP +V+A+ L+AG S + +W
Sbjct: 301 NDKIRLSSSSGEKSNPFDLKFIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLLEKW 358
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADP 350
A D KNLV+ T GT+A+ L +P
Sbjct: 359 APDNKNLVILTGYSVEGTMAKELLKEP 385
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 159/323 (49%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+D +L++H H +L Y M++ V+ T P VY+
Sbjct: 57 STVDVLLITHFHLDHAASLTYIMEKTNFRDGHGKVYMTHPTKAVYKFMMQDFVRMSSSSS 116
Query: 94 -GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
L + D +S S+ ++ Q L GI P+ AGH+LG ++ I G ++
Sbjct: 117 DALFSPLDLSMSLSSIIPVSAHQ---LITPFPGISFTPYHAGHVLGACMFLIDIAGLKIL 173
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 211
Y DY+R +++HL L +RP VLI ++ + + R+++E F + + ++ GG
Sbjct: 174 YTGDYSREEDRHLVKAELPP-IRPDVLIAESTWGVQSGDSREEKEARFTNIVHSIIKRGG 232
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
+VL+P + GR ELLLIL++YW++H N PIY+ + ++ + ++++ M +I
Sbjct: 233 HVLMPTFAIGRAQELLLILDEYWSKHPELHNVPIYYASSLARKCMAVYQTYIHTMNSNIR 292
Query: 270 KSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
F RDN F+ KH++ E A P ++LAS L++G S ++ A D
Sbjct: 293 SRF-AKRDNPFVFKHISHAPQNRGWERKLAEGPPCVILASPGMLQSGPSRELLELLAPDS 351
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N ++ T GT AR + +P
Sbjct: 352 RNGLVLTGYSVEGTPARDIINEP 374
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 41/368 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKV-ASTIDAVL 59
G +++ PL + + G + DCG + F P L V S +DA+L
Sbjct: 13 GEMLEIIPLGAGSEVGRSCVVATFRGKTLMFDCGIHPGFSGIASLPYLDDVDLSAVDALL 72
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR------------- 106
++H H A+P+ + + +F T P + + M D +
Sbjct: 73 VTHFHLDHCAAVPFLVGRTDFRGRIFMTHPTKAIYHMLMQDFVRLMKQGGGEEPLFTDAD 132
Query: 107 ---SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
S+ R+ ++H +G+ V P+ AGH+LG ++ + G V+Y DY+R ++
Sbjct: 133 LEASMKRIEVV-DFHQEIDVDGVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSRIADR 191
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
HL + + + P V+I ++ + PR++RE+ R
Sbjct: 192 HLPAADIPA-IPPHVVIVESTYGVSPHSPREEREIRXXXXXXX---------------RA 235
Query: 224 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLILED+WA++ PIY + ++ + ++++ + + +FE + N F+
Sbjct: 236 QELLLILEDFWAQNPDLQRVPIYQASTLARKAMTIYQTYINVLNADMKAAFEEA--NPFV 293
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
HV + SELD+ GP +VLA+ + L++G S ++F W + KN V+ + GT
Sbjct: 294 FNHVKHISKASELDDV--GPCVVLATPSMLQSGLSRELFESWCEEPKNGVIIADFAVQGT 351
Query: 342 LARMLQAD 349
LAR + +D
Sbjct: 352 LAREILSD 359
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 34/328 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL-------------- 95
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 122
Query: 96 ---------LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
+Y +S R+ + +YH + + +GI + AGH+LG ++ +
Sbjct: 123 GDGSGGGEGSNLYTDDDIMKSFDRIE-TIDYHSTMEIDGIRFTAYHAGHVLGACMYFVEI 181
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISK 205
G V++ DY+R + +HL+ + ++P +LI ++ PR + E I
Sbjct: 182 GGLKVLFTGDYSREENRHLHAAEVPP-LKPDILICESTFGTGTLEPRLELERKLTTHIHA 240
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEW 263
T+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++
Sbjct: 241 TIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGI 300
Query: 264 MGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
M D I S +S + N F K + + + S+ + GP +V+A+ L+AG S + +
Sbjct: 301 MNDKIRLSSASSKKSNPFDFKFIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLLEK 358
Query: 323 WASDVKNLVLFTERGQFGTLARMLQADP 350
WA D KNLV+ T GT+A+ L +P
Sbjct: 359 WAPDGKNLVILTGYSVEGTMAKELLKEP 386
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 35/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H G+LPY + + VF T + + D S S
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R + Y+++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ V+IT++ + + PPR +RE +++ + GG V
Sbjct: 194 GDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRV 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 254 LMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRL 313
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L N ++ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSREL 371
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA + +N V+ T GT+ + + +P
Sbjct: 372 LERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 24/340 (7%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
FL+DCG + + P + + IDAV ++H H ALP+ ++ V+ T
Sbjct: 35 FLMDCGVHPAYTGVSCLPFLDLINLEEIDAVFITHFHLDHAAALPFLTEKTAFKGKVYMT 94
Query: 88 EPVYRL--GLLTMYDQYLSRRSVTRL--------TYSQ----NYHLSGKGEGIVVAPHVA 133
P + LL Y + ++ S Y++ +YH GI A
Sbjct: 95 HPTKAILKWLLNDYIRIINSASDEDFYTEKDLENCYNKIIPIDYHQVIDVVGIKFTALNA 154
Query: 134 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 193
GH+LG ++ + ++Y D++R ++HL + + +LIT++ PR
Sbjct: 155 GHVLGAAMFLLEIGQTKLLYTGDFSREDDRHLKSAETPN-CKLDILITESTYGTQCHLPR 213
Query: 194 QQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYPIYFLTYVS 250
+RE F +S + GG LLPV + GR ELLLIL++YW E H PI++ + ++
Sbjct: 214 IERENRFTKVVSDVVERGGKCLLPVFALGRAQELLLILDEYWEENPHLKKIPIFYASALA 273
Query: 251 SSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 310
+ ++++ M + + K +R N F K+V + + + + GP +++AS
Sbjct: 274 KKCMGIYQTYVNMMNERMQK-LNLTR-NPFDFKNVENIKDAKTVRDG--GPCVIMASPGM 329
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
L++G S DIF W SD KN V+ GTLA+ + +P
Sbjct: 330 LQSGVSRDIFERWCSDSKNGVVIAGYCVEGTLAKEVLKEP 369
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T + + D S S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKGE-------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 272 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + + V + + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 35/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H G+LPY + + VF T + + D S S
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R + Y+++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ V+IT++ + + PPR +RE +++ + GG V
Sbjct: 194 GDYSREEDRHLISAEVPKSVKIDVMITESTFGISSNPPRLEREAALMKSVTSVINRGGRV 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 254 LMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRL 313
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L N ++ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSREL 371
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA + +N V+ T GT+ + + +P
Sbjct: 372 LERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T + + D S S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKGE-------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 272 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + + V + + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|308198072|ref|XP_001387057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149389019|gb|EAZ63034.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 934
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 163/671 (24%), Positives = 269/671 (40%), Gaps = 156/671 (23%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH--PDTLHLGALPYAMKQL 78
L+S D F L D WN D + + + + + +LLSH P+ + G + +K
Sbjct: 20 LLSFDNEFRVLADPSWNGK-DVNSVMFMEQHLRNTNIILLSHSTPEFIS-GYVLMCLKFP 77
Query: 79 GLSA--PVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQN 116
L A V+ST PV +LG L+ + Y + ++ L Y Q
Sbjct: 78 NLMANIQVYSTLPVNQLGRLSTVEFYRANGMLGPLNTALLELDEVDEWFDKISLLKYLQ- 136
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV------- 169
L+ +V+ P+ AGH LGGT W ITK + VIYA +N K+ LNG
Sbjct: 137 -ILNVFDNKVVITPYNAGHTLGGTFWLITKRSDRVIYAPAWNHSKDSFLNGASFLSSSSG 195
Query: 170 --LESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
L +RP IT + + +++ E F + TL GG ++P +GR LEL
Sbjct: 196 NPLSQLLRPTAFIT-STDMGSVMSHKKRTEKFLQLVDATLANGGAAVIPTSLSGRFLELF 254
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------FL 281
+++++ + P+YFL+Y + + Y + ++WM S+ +E + + F
Sbjct: 255 HLIDEHLQGAPI--PVYFLSYSGTKVLSYASNLIDWMSSSVQSQWEEAESSTNYKNLPFD 312
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFG 340
V LL++ EL GPK+V S L G S + F D K+ +L TE+ FG
Sbjct: 313 PSKVDLLLSPEELIQLS-GPKIVFCSGIDLRNGELSAEAFQYLCQDEKSTILLTEKSLFG 371
Query: 341 ---TLARMLQAD-------------------PPPKAVKV-TMSRRVPLVGEELIAYEEEQ 377
TL +L + P + + +R L G L ++E
Sbjct: 372 VDETLNTVLYKEWHSLTKQKLGGKVEDGVAVPLERVFSIDDWTREENLSGTALTDFQERI 431
Query: 378 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANAS---------------- 421
+KE+ L V++ +++ L D L G+ + + N+S
Sbjct: 432 AVRRKEKLLAK--VRDRKNQNLLNSD--LVGEEDSSEDEDGNSSDEETKVSETTETTTVV 487
Query: 422 ----------ADVVEPHGG-------------RYRDILIDGFVPPSTSVAPMFPFYENN- 457
AD + H R D+ I + P + MFP++ N
Sbjct: 488 ASTVASGPSVADELAAHEAFITDHIKQSLEENRPLDLKITYKLKPRQA---MFPYFINTH 544
Query: 458 -SEWDDFGEVINPDDYIIKDEDMDQAAMHIGG-----DDGKLDEGSAS---LILDAKPSK 508
++DD+GEVI+ D+ DE + + G +D + G S I P +
Sbjct: 545 KQKFDDYGEVIDVKDFQKTDEVNNNKIILEGKKKFEQNDRRKYNGKKSQRHQISKLTPQE 604
Query: 509 VVSNEL----------------------------TVQVKCLLIFIDYEGRADGRSIKTIL 540
+++N+L ++V+C L F+D G D RS+ I+
Sbjct: 605 LLNNQLLEKYLDTLFAPRRRVPLGAASTYSNTNQQLKVRCGLSFVDLSGLVDIRSLGVIV 664
Query: 541 SHVAPLKLVLV 551
S + P L+L+
Sbjct: 665 SSLKPSNLLLL 675
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 156/331 (47%), Gaps = 38/331 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEP---VYRL------------- 93
ST+DA+L++H H +L Y M+ + VF T P VYR
Sbjct: 47 STVDAILITHFHLDHAASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGT 106
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L LS S+ + Y Q L + + AGH+LG ++ I G V
Sbjct: 107 DGELFNEEQMTLSYESINAIDYHQEISLGS----LRFTSYPAGHVLGAAMFLIEIAGIRV 162
Query: 152 IYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPR-QQREMFQDAISKTLRA 209
+Y DY+ +++HL + ++ +P V+I ++ + + PR ++ E F + L+
Sbjct: 163 LYTGDYSTEEDRHLIPAKVPNWNEKPDVMICESTYGVQSLEPRPEKEERFTALVQMILKR 222
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW+ H LN PIY+++ +++ + ++F+ M +
Sbjct: 223 GGRVLMPVFALGRAQELLLILDEYWSNHPELNSIPIYYISNLAAKCMKVYQTFIHGMNEE 282
Query: 268 ITKSFETS-------RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDI 319
I F R+ L K + N LD D GP +V+AS + G S ++
Sbjct: 283 IKSKFNKGINPWTFFREGKGLFKK-GYVTNLKTLDKFDDRGPCVVMASPGFMTNGASREL 341
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA D +N +L T GT+AR + +P
Sbjct: 342 LERWAPDRRNGLLVTGYSIEGTMAREMLKEP 372
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 35/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H G+LPY + + VF T + + D S S
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R + Y+++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ V+IT++ + + PPR +RE +++ + GG V
Sbjct: 194 GDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRV 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 254 LMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRL 313
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L N ++ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSREL 371
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA + +N V+ T GT+ + + +P
Sbjct: 372 LERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 160/335 (47%), Gaps = 43/335 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H G+LPY + + VF +T+ +Y
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D + + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYTEHDHLSTLPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALIKSVTSIINR 249
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 268 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F A + + V L N ++ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGT 367
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 368 SRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 35/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H G+LPY + + VF T + + D S S
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 109 TRLT-YSQNYHLSG-------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R + Y+++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHAINSIRITPFPAGHVLGAAMFLISIAGLNILFT 193
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL + V+ V+IT++ + + PPR +RE +++ + GG V
Sbjct: 194 GDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRV 253
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 254 LMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRL 313
Query: 272 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F A + + V L N ++ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSREL 371
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA + +N V+ T GT+ + + +P
Sbjct: 372 LERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T + + D S S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 272 F-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + V + + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 169/345 (48%), Gaps = 39/345 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRSVT 109
S +D +L+SH H +LPY M+ VF +T+ +YR LL + + S + +
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTTFKGRVFMTHATKAIYRW-LLQDFVRVTSIGAGS 122
Query: 110 RLTYSQ----------------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
R S +YH + + +GI + AGH+LG ++ +
Sbjct: 123 RAEGSDETSTNLYTDDDIISSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFVEIG 182
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ--QREMFQDAISK 205
G V++ DY+R + +HL+ + RP +LIT++ P+ ++ + Q+ I
Sbjct: 183 GLKVLFTGDYSREENRHLHAAEVPP-TRPDILITESTFGTGTLEPKADLEKRLVQN-IHA 240
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEW 263
TL GG VL+PV S G ELLLIL++YW ++ N ++F + ++ + +++
Sbjct: 241 TLTKGGRVLMPVFSLGNAQELLLILDEYWEKNEDLQNISVFFASKLARKCMAVYQTYTSI 300
Query: 264 MGDSITKSFETSRDNA-FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 322
M D+I S + ++ F K++ + + + + GP +V+AS L+AG S + +
Sbjct: 301 MNDNIRLSSRIGQKSSPFDFKYIKSIKDLGKFSDM--GPSVVVASPGMLQAGVSRQLLEK 358
Query: 323 WASDVKNLVLFTERGQFGTLARMLQADPP--PKAVK--VTMSRRV 363
WA D KNLV+ T GT+A+ L +P AV +T+ RR+
Sbjct: 359 WAPDPKNLVVMTGYSVEGTMAKDLLNEPHTIKSAVNPDITIPRRI 403
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 30/354 (8%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ G + P++ + P L L + D + RR L + + K
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DYW
Sbjct: 199 LISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++ PIYF + ++ Y K + W ++ + T N F K+V L +A
Sbjct: 259 NIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRSLIHA 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
P GP ++ A+ L AGFS ++F WA NLV GT+ L A P
Sbjct: 315 P-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T + + D S S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 272 F-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + V + + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 37/343 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSV 108
ST+D +L+SH H +LPY + + VF T + + D S S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 109 TRLT-YSQNYHLSGKG-------------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
R T Y++ HLS I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 213
DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 214 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 272 F-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 319
F E S D + + V + + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|389601462|ref|XP_001565522.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505052|emb|CAM39016.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 829
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 171/704 (24%), Positives = 284/704 (40%), Gaps = 121/704 (17%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P +YLV IDG L DCGWN+ FD S L L +T+ AV+LS P GALP+ +
Sbjct: 23 PYAYLVEIDGVRILFDCGWNEEFDTSFLAKLKPYLATVHAVILSSPHITACGALPFVLTH 82
Query: 78 LGLSAPVFSTEPVYRLG----LLTMYDQYLSRRSVT-------RLTYSQNYH-------- 118
+ V + ++G L + QY + + T +T YH
Sbjct: 83 IAPGTFVAAAGATSKIGVHSVLHSFLYQYPNSHTFTLADGEGFTMTVDSIYHSFRSLREP 142
Query: 119 ----LSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
++ K E + V AG +LGG W I +++ Y D++ + L+S
Sbjct: 143 YGGKVTVKNEDVEVNCFAVFAGRMLGGYSWTIKYQIDELFYCPDFSVKP-----SYALKS 197
Query: 173 FVRPA----VLITD--AYNALHNQPPR---QQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
F P VL++ + + N+ + Q + +F++ + TLR G +VL+PV+ AGR
Sbjct: 198 FDVPTTANIVLVSSFPFHMTVSNRTTKYEEQLKSLFKE-LQHTLRGGSDVLVPVNVAGRG 256
Query: 224 LELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
LE+L IL AE + Y + + + +D + E + D + D+ L
Sbjct: 257 LEVLNILVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQDYLI------LDDKRLF 310
Query: 283 KHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI---FVEWASD-VKNLVLFTERG 337
+V L +S + P GPK+ +A ASL+ G S ++ FV+ D +L++ TE
Sbjct: 311 ANV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELLEYFVKGNRDGADHLIVLTEPP 368
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY------EEEQTRLKKEEALKASLV 391
GT A ++ A + + ++RR L GEEL Y + EQ R + E +V
Sbjct: 369 LPGTNATVVTAAGDGERLHFQITRRSRLSGEELEEYYIDLEHDVEQRRRELEAQSIFQVV 428
Query: 392 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG--------------------- 430
++E A+ N GD D ++ A HGG
Sbjct: 429 PDDEEDAA-----NTKGDADDDDDDDGEWVAAAATSHGGAAEKPSTISGTTAATTAGAGD 483
Query: 431 ------RYRDILIDGFV-PPST---SVAPMFPFYENNSEWD---------DFGEVINPDD 471
+ + G V PPS S FP E S +G ++ ++
Sbjct: 484 AAGVPAKTKAATTPGLVLPPSLHYHSKHLSFPVLETASTLSAAALKRIDVAYGLPVSEEE 543
Query: 472 YIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRA 531
++ + G + E A + + PSKV + V +C ++ D G
Sbjct: 544 QVVLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAVEVTRRCRVVLSDLSGYP 602
Query: 532 DGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEET-----IDV 584
D ++K+IL K+V + G+AE + C + T +++
Sbjct: 603 DALTMKSILKTKWTFAKKMVGLRGNAEDGRAFQHFCRADKSMKCGSTVFSVTSSGVPLEL 662
Query: 585 TSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAEV 620
+ + +Y VQL L ++ K +E+ WV+ E+
Sbjct: 663 ATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGEL 706
>gi|212543221|ref|XP_002151765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
gi|210066672|gb|EEA20765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
Length = 1015
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 153/350 (43%), Gaps = 78/350 (22%)
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLE 171
+G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 192 DGLTLTAYSAGHTVGGTIWHIQHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIE 251
Query: 172 SFVRPAVLITDAYNALHNQPP---RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+P LI + PP ++ + D I +L GG+VL+P D++ RVLEL
Sbjct: 252 QLRKPTALICSSKGGDKFAPPGGLHKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSY 311
Query: 229 ILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----- 274
LE W + + +Y + ST+ +S LEWM + I + FE
Sbjct: 312 ALEHAWRDAADSADSEDVFKKAELYLAGRKAHSTMRLARSMLEWMDEGIVREFEAVEGGD 371
Query: 275 -------------------SRDNA------FLLKHVTLLINKSELDNA-PDG-PKLVLAS 307
+RD F LKH+ ++ K +L+ DG PK+++AS
Sbjct: 372 AAAVRGHKTTDSQNRNAGVTRDKQGTKLGPFTLKHLKIVEQKRKLEKVLADGIPKVIIAS 431
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG 367
SL+ G+S + F A +NL+L TE TL Q D P + K+T+ R +
Sbjct: 432 DTSLDWGYSKETFRTLAQGSQNLILLTE-----TLPIRYQTDDPEQPDKMTLGRMI---- 482
Query: 368 EELIAYEEEQTRLKKEEALKASLVKEEES-----------KASLGPDNNL 406
YEE + + E A L+++ S +A+L PD +
Sbjct: 483 --WRWYEERRDGVAMETASNGELLEQIHSGGREISIVDVERAALDPDEQV 530
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 130/345 (37%), Gaps = 113/345 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH------------------------ 485
MFP+ D++GE I P++Y+ +E + A
Sbjct: 628 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEADAQQRESGPQSEMKLGQKRKWDEIGLNS 687
Query: 486 ------------------IGGDDGKLDE----GSASLILDAK----------PSKVVSNE 513
+GGD G + E GS +++ P+K V
Sbjct: 688 RRLSGGAHKRQEMSPDGALGGDIGGIREDLSMGSDGPESESENEVDEQPFEGPAKTVYQY 747
Query: 514 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL------- 566
TV V + F+DY G D RS++ ++ + P KL+LV G E T L C
Sbjct: 748 STVTVSARIAFVDYMGLHDKRSLEMLIPLIQPRKLILVGGMKEETASLAAECRHLLAGKD 807
Query: 567 ---KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV------------LFKKLGDY 611
+ ++TP+ E++D + D A+ V+LS L+ + L +L
Sbjct: 808 VGDRSAVVDIFTPKNGESVDASVDTNAWVVKLSNNLVRRLKWQHVRSLGVVALTAQLRPP 867
Query: 612 EIAWVDAEVGKT------------------ENG-------------MLSLLPISTPAPPH 640
EI V+ EV ++ ++G +L +LP S A
Sbjct: 868 EIVSVEDEVTESISKKQKLIETEPDAVSTPQDGVHDSSISKADAYPILDVLPASIAAGTR 927
Query: 641 ---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + VGDL++ADL+ + + G + EF G G L V +RK
Sbjct: 928 SMARPLHVGDLRLADLRKLMIAAGYKAEFRGEGTLLIDGMVAVRK 972
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD L L K T+ VLL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDETFDVLELAELEKHIPTLSLVLLTHATISHIGAFAHCCKIFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATGPVISLGRTLLQDMYTS 106
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 30/354 (8%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ G + P++ + P L L + D + RR L + + K
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DYW
Sbjct: 199 LISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++ PIYF + ++ Y K + W ++ + T N F K+V L +A
Sbjct: 259 NIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRSLIHA 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
P GP ++ A+ L AGFS ++F WA NLV GT+ L A P
Sbjct: 315 P-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367
>gi|302412663|ref|XP_003004164.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356740|gb|EEY19168.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 730
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 28/317 (8%)
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHL 119
++HP L ++G ++ ST+PVY T D + + + Y + +
Sbjct: 1 MTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVY-----TEADHMNTFPQIEAIDYHTTHTI 55
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VL
Sbjct: 56 SS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVL 111
Query: 180 ITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 238
IT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H
Sbjct: 112 ITESTYGIASHVPRVEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHP 171
Query: 239 --LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKH 284
YPIY+ + ++ + ++++ M D+I + F E S D + + +
Sbjct: 172 DFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDFNY 231
Query: 285 VTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR 344
+ L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+A+
Sbjct: 232 IRSLKNLDRFDDL--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAK 289
Query: 345 MLQADPPPKAVKVTMSR 361
+ + P ++ MSR
Sbjct: 290 QIMQE--PDQIQAVMSR 304
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 174/399 (43%), Gaps = 66/399 (16%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLS 61
S+ +TPL + ++ G L+DCG + P +D +L++
Sbjct: 12 SLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVT 71
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL---------------LTMYDQYL 103
H H GALP+ +++ F +T+ +YR+ + +Y++
Sbjct: 72 HFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEED 131
Query: 104 SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
+S+ ++ ++H + GI HVAGH+LG ++ I G ++Y D++R +++
Sbjct: 132 LEKSMEKIEVI-DFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDR 190
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
HL L + V P VLI ++ R +RE K + GG L+P + GR
Sbjct: 191 HLCAAELPT-VSPDVLICESTYGTQVHESRDERE-------KVVGRGGRCLIPAFALGRA 242
Query: 224 LELLLILEDYWAEHSL-----NYPI-----------------------YFLTYVSS---S 252
ELLLIL++YW H N P+ F + SS
Sbjct: 243 QELLLILDEYWEAHPELQDIPNNPVCCNADEMTVVEPNRSVIVGIDLLIFFDHASSLAKK 302
Query: 253 TIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASL 311
+ ++F+ M I K + + +N F+ KHV+ N +D+ D GP +VLAS L
Sbjct: 303 CMAVYQTFVSGMNSRIQK--QIALNNPFVFKHVS---NLKSIDHFEDVGPCVVLASPGML 357
Query: 312 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ G S ++F W +D KN + GTLA+ + ++P
Sbjct: 358 QNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKHILSEP 396
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 141/330 (42%), Gaps = 38/330 (11%)
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV----------YRLGLLTM 98
++ ID VL+SH H+GALPY + P++ T P YR +
Sbjct: 64 TQYTDIIDLVLISHFHLDHIGALPYFSEIYQYDGPIYMTAPTKALFPYMCEDYRKVISDT 123
Query: 99 YDQ--------YLSRRSVTRLTYSQ-NYHLSGKG------------EGIVVAPHVAGHLL 137
Y + + YSQ N S + GI + P+ AGH+L
Sbjct: 124 YKKENMIDDNNNNDQLQKMPFVYSQENIQNSFQKVQTIQLLETIDVNGIKIKPYYAGHVL 183
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQR 196
G ++ I G V+Y D++ ++HL ++ + P +LI++ Y + + R +
Sbjct: 184 GACMFLIEYKGIKVVYTGDFHSNADRHLGAAWIDK-INPDLLISECTYGTIVRESKRARE 242
Query: 197 EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDY 256
F + +T+ GG VL+PV + GR EL ++LE YW P+YF + Y
Sbjct: 243 RTFLQQVQETIDQGGKVLIPVFALGRAQELCVLLETYWQRTQNQAPVYFAAGMIEKANFY 302
Query: 257 VKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 316
K F+ W + I + DN F KH+ KS + + P ++ A+ L AG S
Sbjct: 303 YKLFVNWTNEKIKSCYLI--DNMFNFKHIKPF-QKSLIK--ANMPMVLFATPGMLHAGLS 357
Query: 317 HDIFVEWASDVKNLVLFTERGQFGTLARML 346
+F EW D KN ++ GTL L
Sbjct: 358 MQVFKEWCYDSKNTLIIPGYCVAGTLGNKL 387
>gi|281206064|gb|EFA80253.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 656
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 10/238 (4%)
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
YH + +GI + AGH+LG ++ I G ++Y D++R++++HL G V
Sbjct: 45 YHEKLEHKGIKFCCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPP-VNV 103
Query: 177 AVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
+LI ++ + PR +RE F +I + ++ GG L+PV + GR ELLLIL++YW
Sbjct: 104 DILIIESTYGVQVHEPRLEREKRFTSSIHEVVKRGGRCLIPVFALGRAQELLLILDEYWI 163
Query: 236 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
H PIY+ + ++ + ++++ M + I F+ S N F KH+ N S
Sbjct: 164 AHPELQKIPIYYASALARKCMSVYQTYINMMNERIRAQFDLS--NPFSFKHIE---NISG 218
Query: 294 LDN-APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
++ DGP + +AS L++G S +F W SD N V+ GTLA+ + ++P
Sbjct: 219 IERFTDDGPCVFMASPGMLQSGLSRQLFERWCSDKMNGVVIPGYNVEGTLAKHIMSEP 276
>gi|354543512|emb|CCE40231.1| hypothetical protein CPAR2_102690 [Candida parapsilosis]
Length = 938
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 196/924 (21%), Positives = 343/924 (37%), Gaps = 268/924 (29%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPVFST 87
L D WN D Q + DA+++SH + L + + PV+ST
Sbjct: 30 LADPSWNG-VDAKAAQFMESHLQQTDAIIISHSTDEFISGYILLCITFPNIMSNMPVYST 88
Query: 88 EPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGEGIV 127
PV +LG ++ + Y S+ T + Y QN + + I
Sbjct: 89 LPVNQLGRISTVEYYRSQGILGPLLSNLIELDEIDNWFDKFTIVKYQQNVTICDRK--IT 146
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL---------ESFVRPAV 178
+ P+ +GH LGGT W K + ++YA +N K+ LNG S +RP
Sbjct: 147 MTPYNSGHSLGGTFWLFVKRIDRIVYAPSWNHSKDAFLNGANFINSTSGNPHVSLLRPTA 206
Query: 179 LIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 236
IT D +A+ + +++ E F + TL GG+ ++P +GR LE+ +++++
Sbjct: 207 FITATDLGSAMSH---KKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDEHLKG 263
Query: 237 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL----KHVTLLINKS 292
+ P+YF++Y + + Y S ++WM K++ T N LL V LL++ S
Sbjct: 264 API--PVYFISYSGTKVLSYASSLMDWMSSDFNKTWNTDGGNNSLLPFNPSKVDLLLDPS 321
Query: 293 ELDNAPDGPKLVLA--------------------------------SMASLEA---GFSH 317
EL P G K++ S A++EA G S
Sbjct: 322 ELTQTP-GAKIIFCAGLDLKNGDLSSKVFSYLCNDERTTVILTEKPSSANVEAEGSGLSG 380
Query: 318 DIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS---RRVPLVGEELIAYE 374
D++ EW L ER +++ P P + + + + G E I +
Sbjct: 381 DLYQEWVK------LSRER-----TGKVVDGTPVPLEKIINLDSWLQEEEVEGRESITFV 429
Query: 375 EEQTRLKKEEALKASLVKEEESKASLGPD-------------NNLSGDPMVIDANNANAS 421
+ T+ +KE+ + + V++++ + L D D V + +A
Sbjct: 430 NKITQKRKEKLM--AKVRDQKRQNLLSTDVLDVEDSSDDDEDEEEEADKKVGEMFDAKVK 487
Query: 422 ADVVEPHGGRYRDILI--DGFV------------PPSTSVA-------PMFPFYENNSEW 460
+ + D LI + FV P + MFP++ + +
Sbjct: 488 KERTRIPSTKEVDELIQHEAFVMDNIKHNMENHLPIDIKITHKLKPRQAMFPYFPPKAAF 547
Query: 461 DDFGEVINPDDYIIKD-----------------------------EDMDQAAMHIGGDDG 491
DD+G+VIN D+ D + Q A + +
Sbjct: 548 DDYGQVINAKDFERTDLVSHNKIIMEGKKKFDEKKQKWNKNDKNEKKKSQQANKLTPQE- 606
Query: 492 KLDEGSASLILDA--KPSKVV------SNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 543
++++ LD KP K V S ++V+C L F+D G D RS+ I+ +
Sbjct: 607 QVNQQLLQKYLDTLYKPLKRVQSGQRTSASTQLRVRCGLAFVDLSGLVDLRSLGIIVQAL 666
Query: 544 APLKLVLV--------------------HGSAEATEHLKQHCLKH--------------- 568
P L+L+ + +A E+ K+ +
Sbjct: 667 KPYNLILLPDERVSDQRGLEQVERFFEQQQNEQAIENTKKQMVNSSRYLSLTAIRDGLST 726
Query: 569 -VCPH------VYTPQIEETIDVTSD-------LCAYKVQLSEKLMSNVLFKKLGD-YEI 613
+ P+ V+ + ++ I + D L +++ L + L+S + ++ +GD Y++
Sbjct: 727 SISPYSSGKLNVFVAKYDKAIKIGVDSENGVIGLRNFEINLDDALVSTLKWQSVGDNYKV 786
Query: 614 AWVDAEV----------------GKT------ENGMLSLLPISTPAPPHKS--------- 642
A + E+ KT N SL PI + K
Sbjct: 787 AKMYGELELINEQPSSEEPLQKKQKTLQDFINSNTQFSLKPIESDEALIKQRNNNILDKT 846
Query: 643 --------------VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
+ +G++++ DLK L+S + VEF G G L + IRKV
Sbjct: 847 NDPKLLMVIANAPKLAIGNIRLPDLKNKLTSLNLNVEFKGEGTLVVNNALAIRKVAYGSL 906
Query: 688 KGGGSGTQQIVIEGPLCEDYYKIR 711
+ SG IVI+G YYK++
Sbjct: 907 ESDDSG--DIVIDGNAGPLYYKVK 928
>gi|115396064|ref|XP_001213671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193240|gb|EAU34940.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1005
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 168/420 (40%), Gaps = 111/420 (26%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP +LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLVLQELEKHVPTLSLILLTHATPAHIGAFVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRSVTR----LTYSQNYHLSGKGEGIVVAPH 131
++T PV LG + D Y S + S++ + + + +GEG APH
Sbjct: 87 YATSPVIALGRTLLQDLYASAPLAATFLPKASISEPGAGTSAASAGATATEGEGSADAPH 146
Query: 132 VAGHLL---------------------------------------------GGTV----W 142
+ LL G TV W
Sbjct: 147 PSRILLQPPTNEEIARYFSLIHPLKYSQPHQPSPSPFSPPLNGLTLTAYNAGHTVGGTIW 206
Query: 143 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 190
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HIQHGMESIVYAVDWNQARESVVAGAAWFGGPGASGTEVIEQLRKPTALVCSTRGGDKFA 266
Query: 191 PP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN------- 240
P R++R ++ D I TL GG VL+P D++ RVLEL LE W + + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRDAAASGSEDKTL 326
Query: 241 --YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--------------------- 277
+Y +T+ +S LEWM ++I + FE +
Sbjct: 327 KEAGLYLAGRKVHTTMRLARSMLEWMDENIVREFEAAEGVDATTGQSIQRPGGQKDEKGV 386
Query: 278 NAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
F K++ L+ + +L+ A PK++LAS +SL+ GF+ + A NL+L TE
Sbjct: 387 GPFTFKNLKLVERRKKLEKILADQTPKVILASDSSLDWGFAKESLRLIAEGSNNLLLLTE 446
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 74/287 (25%)
Query: 477 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
+D+ A GG+D + E A + P+K + T+ + L F+D+ G D RS+
Sbjct: 696 DDLSLAEDGEGGEDAVVSEDEADQSFEG-PAKATYEKETLTINARLAFVDFRGLHDKRSL 754
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-------------VYTPQIEETID 583
+ ++ + P KL+LV G T L C K + ++TP E +D
Sbjct: 755 EMLIPLIQPRKLILVGGMKGETTALATECRKLLAAKAGVDVASSTDSAIIFTPANGEVVD 814
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------------G 621
+ D A+ V+LS L+ + ++ + + + A+V G
Sbjct: 815 ASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQVRGPDVAPPDETADAPSKKQKLEG 874
Query: 622 KTENG------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLK 654
+ +L +LP + A + + VGDL++ADL+
Sbjct: 875 EASTTTEPDSSATTAVQAKPTTDKTDVYPLLDILPANMAAGTRSMTRPLHVGDLRLADLR 934
Query: 655 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 700
+ G + EF G G L V +RK SGT +I IE
Sbjct: 935 KLMQGAGHRAEFRGEGTLLIDGTVAVRK----------SGTGKIEIE 971
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 30/354 (8%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + D SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ G + P++ + P L L + D + RR L + + K
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEDELFTTAHIANCMKKVIAIDLKQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAVMVYAKVGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DYW
Sbjct: 199 LISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++ PIYF + ++ Y K + W ++ + T N F K+V L +A
Sbjct: 259 NIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRSLIHA 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
P GP ++ A+ L AGFS ++F WA NLV GT+ L + P
Sbjct: 315 P-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMSGKP 367
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 36/331 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEP---VYRL------------- 93
ST+DA+L++H H L Y M++ + V+ + P VYR
Sbjct: 80 STVDAILITHFHLDHAACLTYVMEKTNFKEGNGVVYMSHPTKAVYRYLMSDFVRVSTAGS 139
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHL---SGKGEGIVVAPHVAGHLLGGTVWKITKDG 148
L T + S + + Q L S + AGH+LG ++ I G
Sbjct: 140 DDNLFTESEMLASFDQIQSFDFEQEILLPPSSTSSASVRFTSFAAGHVLGACMFLIEVAG 199
Query: 149 EDVIYAVDYNRRKEKHLNGTVLESFVRPA-VLITDAYNALHNQPPRQQRE-MFQDAISKT 206
V+Y DY+ +++HL + ++ RP V+I ++ + + PR ++E F + +
Sbjct: 200 ARVLYTGDYSTEEDRHLVPAKVPNWERPPDVMICESTYGVQSHEPRLEKEAQFTNLVRSI 259
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
L+ GG VLLPV + GR ELLLIL++YWAEH + PIY+++ ++ +D + ++ M
Sbjct: 260 LKRGGRVLLPVFALGRAQELLLILDEYWAEHPELQHIPIYYVSSLAIKCMDVYRQYIHTM 319
Query: 265 GDSITKSFETSRDNAFLLKHVTLLINK-----SELDNAPDGPKLVLASMASLEAGFSHDI 319
++ F N F K I S+L++ P +V+AS L +G S ++
Sbjct: 320 SPNVRSKFARGI-NPFDFKRKDSFIRPLDRGISKLNDR--NPCVVMASPGFLTSGVSREL 376
Query: 320 FVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+WA D +N ++ T G +AR + +P
Sbjct: 377 LEKWAPDPRNGLIITGYSVEGVMARTIMNEP 407
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 48/376 (12%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LV++ N + DCG ++DH D + + S ID
Sbjct: 8 IRVIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLG---LLTM 98
V++SH H GALPY + G P++ T P V R G T
Sbjct: 68 VIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFFTS 127
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDG----EDVIY 153
D + V + + + + E + P+ AGH+LG ++ + DG + V+Y
Sbjct: 128 VDIKNCMQKVIAVNLMETVQVDAQLE---IRPYYAGHVLGAAMFYVRVTDGYGVTQSVVY 184
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 212
DYN ++HL ++ P ++IT+ A + ++ RE F + + GG
Sbjct: 185 TGDYNMTPDRHLGAAQIDG-CEPDLIITETTYATTIRDSKRARERDFLKKVHDCVSGGGK 243
Query: 213 VLLPVDSAGRVLELLLILEDYWAEH---SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
VL+PV + GR ELL+++E YW P+YF T ++ +Y K F+ W +++
Sbjct: 244 VLVPVFALGRAQELLILIESYWRRMDDLCDKVPVYFSTGLTERANEYYKLFISWTNENV- 302
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDV 327
KS R N F H+ +S + D G ++ A+ L AG S ++F +W D
Sbjct: 303 KSALVER-NMFDFAHI-----RSWSHSFADEPGAMVLFATPGMLHAGTSLEVFKKWCHDP 356
Query: 328 KNLVLFTERGQFGTLA 343
KN+++ GT+
Sbjct: 357 KNMIIMPGYCVAGTVG 372
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L+ L K+ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 94 LINNLKKINEIIDCVIISHFHMDHIGALPFFTEILQYKGTIIMSYPTKALSPVLLLDGCK 153
Query: 101 ---------------QYLSRRSVTRLTYSQN--------------YHLSGKGEG------ 125
+ L+ +S L Y+ N Y+ K G
Sbjct: 154 ISDIKWEKKNLEKQIKMLNEKSDDLLNYNINCIKKDPWNITEENIYNCINKVVGLQVNET 213
Query: 126 -----IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
I + P+ AGH+LG ++++ + VIY DYN +KHL T + + P + I
Sbjct: 214 YELGDISITPYYAGHVLGACMYRLEVNNISVIYTGDYNTIPDKHLGSTKI-PVLTPEIFI 272
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P R+ E+ + +++ + GG VL+PV + GR EL ++LE+YW + +
Sbjct: 273 SESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVFAIGRAQELSILLEEYWEKMKI 332
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
N PIYF ++ + Y K + W+ ++ T N F +++ N +N
Sbjct: 333 NCPIYFGCGLTENANKYYKIYSSWISNNCV---STEVKNLFDFSNISQFSNNYLNENR-- 387
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G + F WAS+ NL++ GT+ L
Sbjct: 388 -PMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYCVQGTIGHKL 433
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 492 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
KL G ++LD V V C +I++ + AD I+ ++ HV P ++ V
Sbjct: 432 KLIMGEKKILLDGNT--------YVYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFV 483
Query: 552 HGSAEATEHLKQHC-----LKHVCPHVYTPQIEETIDVTSDLCAYKVQ---LSEKLMSNV 603
HG E L +H + +CP Y Q + + C Y + L K+ +N+
Sbjct: 484 HGDKNGMEKLSKHISNQYHINSICP--YMGQ-----NCQFNFCKYNINYVYLDRKIYNNI 536
Query: 604 L 604
+
Sbjct: 537 I 537
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 171/383 (44%), Gaps = 35/383 (9%)
Query: 20 SYLVSIDGFNFLIDCGWN----DHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73
S LV I L+DCG N D D P+ P KV D VL+SH T HL A+PY
Sbjct: 28 SILVEIGSKKVLLDCGVNFTATDEKDRLPAYQDPFPKV----DLVLISHIHTDHLAAVPY 83
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS------------RRSVTRLTYSQNYHLSG 121
+ L APV+ T ++ + M D +L ++ + Y
Sbjct: 84 LTEVLKCQAPVYMTR-ASQMMMPIMLDDFLKVTENPPYKAEDLTNCKPKIKVVEFYSRFE 142
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
GI V AGH+LG + + G IY D++ + HL+G + P +LIT
Sbjct: 143 AAPGIFVQAFPAGHILGAACFFVQVRGLSFIYTGDFSAIADHHLSGHAVPRLF-PDLLIT 201
Query: 182 DAY--NALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
++ N + + +++R Q + + + GG VL+PV + GR+ E+ L+LEDYW
Sbjct: 202 ESTYGNQVRDSIAKRERSFVQ-MVHQVVGEGGKVLIPVFAVGRLQEICLMLEDYWNRMGY 260
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV-TLLINKSELDNAP 298
PIY+ T + + + K + WM ++ + + AF + KS++D +
Sbjct: 261 TEPIYYTTNLGENCMKVYKQCVNWMNPTVQTNLFDNGSTAFKFTYSRNFNPKKSKIDESR 320
Query: 299 DGPKLVLASMASLEAG---FSHDIFVEWASDVKNLVLFTERGQFGTLAR-MLQADPPPKA 354
++LA+ L G F+ + +W D +N+V+F T R +L D
Sbjct: 321 G--LVMLATSGMLNPGTPAFNFFVNEKWYDDPRNMVIFPGYCGPNTFGRAVLTRDLTTNR 378
Query: 355 VKVTMSRRVPLVGEELIAYEEEQ 377
V+ T SRR + + +I + E+
Sbjct: 379 VQFT-SRRPAMTVDIIIKCKVER 400
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 46/305 (15%)
Query: 31 LIDCG------------WNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78
L DCG + D DPS TID +L++H H +LPY +++
Sbjct: 50 LFDCGIHPAYSGMAALPYFDEIDPS----------TIDVLLITHFHLDHAASLPYFLEKT 99
Query: 79 GLSAPVF---STEPVYRLGLL------------TMYDQYLSRRSVTRLTYSQNYHLSGKG 123
VF +T+ +Y+L L +YD+ RS+ ++ ++H + +
Sbjct: 100 TFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVI-DFHQTVEV 158
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ + G V+Y DY+R +++HL + F +I
Sbjct: 159 NGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIEST 218
Query: 184 YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 241
Y +QP + + F D + T+ GG VL+P + GR ELLLIL++YWA H N
Sbjct: 219 YGVQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNI 278
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 301
PIY+ + ++ + +++ M D I + ++ N F K+++ L + + GP
Sbjct: 279 PIYYASPLAKRCLTVYETYTLSMNDRI----QNAKSNPFRFKYISPLKSIEVFKDV--GP 332
Query: 302 KLVLA 306
+V+A
Sbjct: 333 SVVMA 337
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 161/329 (48%), Gaps = 35/329 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL-------------- 95
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 64 SKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRT 123
Query: 96 ---------LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
+Y +S R+ + ++H + + +GI + AGH+LG ++ I
Sbjct: 124 EGGGGNDEGGNLYTDDDIFKSFDRIE-TIDFHSTMEVDGIRFTAYYAGHVLGACMYLIEI 182
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISK 205
G V++ DY+R + +HL + V+P VLIT++ P+ + E + I
Sbjct: 183 GGLKVLFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPKAELEKKLTNHIHA 241
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEW 263
T+ GG VLLPV + G ELLLIL++YW ++ N +Y+ + ++ + +++
Sbjct: 242 TITKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETYTGI 301
Query: 264 MGDSI--TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I + S + S+ N F K++ + N S+ + GP +V+A+ L+AG S +
Sbjct: 302 MNDKIRLSSSSDDSKSNPFDFKYIKSIRNLSKFSDL--GPSVVVATPGMLQAGVSRQLLE 359
Query: 322 EWASDVKNLVLFTERGQFGTLARMLQADP 350
+WA + KNLV+ T GT+A+ L +P
Sbjct: 360 KWAPEQKNLVILTGYSVEGTMAKDLLKEP 388
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L+ L K+ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 94 LINNLKKINEMIDCVIISHFHMDHIGALPFFTEILQYKGTIIMSYPTKALSPVLLLDGCK 153
Query: 101 ---------------QYLSRRSVTRLTYSQN--------------YHLSGKGEG------ 125
+ L+ +S L Y+ N Y+ K G
Sbjct: 154 ISDMKWEKKNLEKQIKMLNEKSDDLLNYNINCLKKDPWNITEENIYNCINKVVGLQVNET 213
Query: 126 -----IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
I + P+ AGH+LG ++++ + VIY DYN +KHL T + + P + I
Sbjct: 214 YELGDISITPYYAGHVLGACMYRLEVNNISVIYTGDYNTIPDKHLGSTKI-PVLTPEIFI 272
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P R+ E+ + +++ + GG VL+PV + GR EL ++LE+YW + +
Sbjct: 273 SESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVFAIGRAQELSILLEEYWEKMKI 332
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
N PIYF ++ + Y K + W+ ++ T N F +++ N +N
Sbjct: 333 NCPIYFGCGLTENANKYYKIYSSWISNNCV---STEVKNLFDFSNISQFSNNYLNENR-- 387
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G + F WAS+ NL++ GT+ L
Sbjct: 388 -PMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYCVQGTIGHKL 433
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 492 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
KL G ++LD + V C +I++ + AD I+ ++ HV P ++ V
Sbjct: 432 KLIMGEKKILLDGST--------YIYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFV 483
Query: 552 HGSAEATEHLKQHC-----LKHVCPHVYTPQIEETIDVTSDLCAYKVQ---LSEKLMSNV 603
HG E L +H + +CP Y Q + + C Y + L + +N+
Sbjct: 484 HGDKNGMEKLSKHISNQYHINSICP--YMGQ-----NCQFNFCKYNINYVYLDRNIYNNI 536
Query: 604 LFK 606
+ K
Sbjct: 537 IQK 539
>gi|71754401|ref|XP_828115.1| cleavage and polyadenylation specificity factor [Trypanosoma
brucei]
gi|70833501|gb|EAN79003.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 818
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 159/687 (23%), Positives = 279/687 (40%), Gaps = 121/687 (17%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P++YL+ IDG L+DCGWND F+ S L L + AVL S P+ GALP+ M+
Sbjct: 28 PMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAVLFSTPELSSCGALPFVMEH 87
Query: 78 LGLSAPVFSTEPVYRLGL--------------------------LTMYDQYLSRRSVTRL 111
+ V + ++GL +T+ Y + RSV R
Sbjct: 88 ITAETHVAAAGATAKMGLHGLLHPFLYLFPNTNTWKLQSGVEFEMTVDKIYSAFRSV-RE 146
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 171
Y + + + P +G +LGG W I +++ Y D++ + LN
Sbjct: 147 PYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIKYQIDELFYCPDFSLKPSYALN----- 201
Query: 172 SFVRP---AVLITDA--YNALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
F P +L D ++ L N + +Q +F + TLR G +VL+PV GR L
Sbjct: 202 RFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREVLSTLRNGKDVLVPVSVPGRGL 261
Query: 225 ELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
E+L I+ E NY I + ++ I + E + D + S N K
Sbjct: 262 EVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTESLKDEVILSEHQLFANVITCK 321
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVEWA-SDVKNLVLFTERGQF 339
+++ + GPK+ LA +L+ G + D+ F++ + D ++L++F +
Sbjct: 322 TAQEVMSVA-------GPKVCLADGETLDYGVAADLLEYFLQGSDEDREHLIVFPWTPKR 374
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPL--VGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
T A + A A+KV +RR+PL E E ++ AL +
Sbjct: 375 DTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQRRALDGGAYE----- 429
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI--LIDGFVPPS----TSVAPMF 451
+ P +++ D D + + D + GG + + G V PS S F
Sbjct: 430 --VAPLEDIASDSG--DDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPSYMSFVSKHLQF 485
Query: 452 PFYENNSEWD---------DFGEVINPD----------DYIIKDEDMDQAAMHIGGDDGK 492
P E +G I + I DE D +H +D +
Sbjct: 486 PILETVGSLSSAVLKKMDCSYGLPIGDEMQALMRRKAPARIYSDEGPDNVQLH---NDAQ 542
Query: 493 LDEG--SASLILDAKPSKVVSNELTVQVKCLLIFI-DYEGRADGRSIKTILSHVAPL--K 547
++ S ++++DA V++K + +FI D G AD +I+++L K
Sbjct: 543 VEANIPSKTMVVDA-----------VRIKNVRVFITDLSGFADAGTIRSLLKSRFTFAKK 591
Query: 548 LVLVHGSAEATEHLKQHC----LKHVCPHVYTPQ-IEETIDVTSDLCAYKVQLSEKLMSN 602
+V++ G+ + + Q C + +V+ P+ + +++ + + +Y VQL +L +N
Sbjct: 592 IVMIRGTTDDHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQL-AN 650
Query: 603 VLFKKL---------GDYEIAWVDAEV 620
L L G +++ WV+ +
Sbjct: 651 ALPSALRRVKETRSNGFWDVGWVEGSL 677
>gi|302501173|ref|XP_003012579.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
gi|291176138|gb|EFE31939.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
Length = 991
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 167/401 (41%), Gaps = 94/401 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL----SA 82
G L+D GW++ FD S+L+ L + A L S T +L L YA L S
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERFVCPYTAALGSFGRT-YLQNL-YASAPLAATFLPST 84
Query: 83 PVFSTEPVYRLGLLTM---------YDQYLSRR---------SVTR-------LTYSQNY 117
V +++P L + ++ Y+ S R + R L YSQ
Sbjct: 85 SVTASDPSSGLTIQSVTSSSQGPSGYENTGSGRILLPPPTNEDIARYFSLIHPLKYSQPL 144
Query: 118 HLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT---- 168
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G
Sbjct: 145 QPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAWFG 204
Query: 169 --------VLESFVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPV 217
V+E +P LI A P R++R+ + D I GG VLLP
Sbjct: 205 SSIGSGTEVIEQLRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPT 264
Query: 218 DSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
DS+ RVLE+ +LE W E + N P+Y + T+ +S LEWM ++I
Sbjct: 265 DSSARVLEIAYVLEHAWREAADSEDSNDPLKNTPLYLAGKKAHDTMRLARSMLEWMDENI 324
Query: 269 TKSFE------------------------TSRDNA--------FLLKHVTLLINKSELDN 296
+ FE S+ +A F KH+ L+ +K++LD
Sbjct: 325 VREFEGNDGVEATTGKAAGGASNQPSKGVQSQKSATGQKSLGPFTFKHLNLVEHKAKLDG 384
Query: 297 A--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
GPK++L+ SLE G S + A +NL++ TE
Sbjct: 385 VLESKGPKVILSPDTSLEWGLSKHVLKHIAEGNENLIIMTE 425
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 58/248 (23%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 698 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDRRSLEMLIPLIQPRNLILIGG 757
Query: 554 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 758 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 817
Query: 600 MSNVLFKKLGDYEI------------------------------AW-----VDAEVGKT- 623
+ + ++ + + + AW V+++ ++
Sbjct: 818 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQSL 877
Query: 624 ----ENGMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
+ +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 878 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 937
Query: 676 YVTIRKVG 683
+V +RK G
Sbjct: 938 FVAVRKAG 945
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 46/307 (14%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + +S G L DCG + D DPS
Sbjct: 23 VTPL-GAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS---------- 71
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------TM 98
T+D +L++H H +LPY +++ VF +T+ +Y+L L +
Sbjct: 72 TVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSVEDML 131
Query: 99 YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
+D+ RS+ ++ ++H + + GI + AGH+LG ++ + G V+Y DY+
Sbjct: 132 FDEQDINRSMDKIEVI-DFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 190
Query: 159 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 218
R +++HL F +I Y H+QP + + F D I T+ GG VL+P
Sbjct: 191 REEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAF 250
Query: 219 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 276
+ GR ELLLIL++YW H N PIY+ + ++ + +++ M D I + ++
Sbjct: 251 ALGRAQELLLILDEYWTNHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI----QNAK 306
Query: 277 DNAFLLK 283
N F K
Sbjct: 307 SNPFSFK 313
>gi|261333901|emb|CBH16895.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 818
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 161/680 (23%), Positives = 280/680 (41%), Gaps = 107/680 (15%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P++YL+ IDG L+DCGWND F+ S L L + AVL S P+ GALP+ M+
Sbjct: 28 PMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAVLFSTPELSSCGALPFVMEH 87
Query: 78 LGLSAPVFSTEPVYRLGL--------------------------LTMYDQYLSRRSVTRL 111
+ V + ++GL +T+ Y + RSV R
Sbjct: 88 ITAETHVAAAGATAKMGLHGLLHPFLYLFPNNNTWKLQSGVEFEMTVDKIYSAFRSV-RE 146
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 171
Y + + + P +G +LGG W I +++ Y D++ + LN
Sbjct: 147 PYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIKYQIDELFYCPDFSLKPSYALN----- 201
Query: 172 SFVRP---AVLITDA--YNALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
F P +L D ++ L N + +Q +F + TLR G +VL+PV GR L
Sbjct: 202 RFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREVLSTLRNGKDVLVPVSVPGRGL 261
Query: 225 ELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
E+L I+ E NY I + ++ I + E + D + S N K
Sbjct: 262 EVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTESLKDEVILSEHQLFANVITCK 321
Query: 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVEWA-SDVKNLVLFTERGQF 339
+++ + GPK+ LA +L+ G + D+ F++ + D ++L++F +
Sbjct: 322 TAQEVMSVA-------GPKVCLADGETLDYGVAADLLEYFLQSSDEDREHLIVFPWTPKR 374
Query: 340 GTLARMLQADPPPKAVKVTMSRRVPL--VGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
T A + A A+KV +RR+PL E E ++ AL +
Sbjct: 375 DTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQRRALDGGAYE----- 429
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI--LIDGFVPPSTSVAPMFPFYE 455
+ P +++ D D + + D + GG + + G V P F
Sbjct: 430 --VAPLEDIASDSG--DDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPG-----YMSFVS 480
Query: 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL-----------DEGSASLIL-- 502
+ ++ V + I+K D + IG + L DEG ++ L
Sbjct: 481 KHLQFPILETVGSLSSAILKKMDCSY-GLPIGDEMQALMRRKAPARIYSDEGPDNVQLHN 539
Query: 503 DAK-----PSKVVSNELTVQVKCLLIFI-DYEGRADGRSIKTILSHVAPL--KLVLVHGS 554
DA+ PSK + + V +K + +FI D G AD +I+++L K+V++ G+
Sbjct: 540 DAQVEANIPSKTMVVD-AVHIKNVRVFITDLSGFADAGTIRSLLKSRFTFAKKIVMIRGT 598
Query: 555 AEATEHLKQHC----LKHVCPHVYTPQ-IEETIDVTSDLCAYKVQLSEKLMSNVLFKKL- 608
+ + Q C + +V+ P+ + +++ + + +Y VQL +L +N L L
Sbjct: 599 TDDHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQL-ANALPSALR 657
Query: 609 --------GDYEIAWVDAEV 620
G +++ WVD +
Sbjct: 658 RVKETRSNGFWDVGWVDGSL 677
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 157/323 (48%), Gaps = 30/323 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQL------GLSAPVFSTEPVYRL------------- 93
ST+D +L++H H L Y M++ G +T+ VY+
Sbjct: 56 STVDVILITHFHLDHAAGLTYIMEKTNFREGKGKVYMTLATKAVYKFIMQDFLRMSSSST 115
Query: 94 -GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 152
L + D +S S+ + Q + GI P+ AGH+LG ++ I G V+
Sbjct: 116 EPLFSPLDFSMSFSSIITVAAHQ---VIVPCPGISFTPYHAGHVLGACMFLIDIAGLKVL 172
Query: 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGG 211
Y DY+R +++HL + S +RP VLI ++ + RE F D ++ ++ GG
Sbjct: 173 YTGDYSREEDRHLVQAQVPS-IRPDVLICESTYGVQKHEELSGREKRFVDLVTAVVKRGG 231
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
+VLLP + GR E+LLILE++W+ + PIY+++ ++ + ++ + M I
Sbjct: 232 HVLLPAFALGRAQEILLILEEHWSRNPDLHGVPIYYVSSLAKKCMAVYQTNISSMNSKIQ 291
Query: 270 KSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 327
+ ++ ++N F+ K++T L +E A P +VLAS ++ G S ++ WA D
Sbjct: 292 ERWK-KQENPFVFKYITNLPQTRGAEKKVAEGPPCVVLASPGFMDNGSSRELLELWAPDP 350
Query: 328 KNLVLFTERGQFGTLARMLQADP 350
+N V+ T GT+AR +Q P
Sbjct: 351 RNAVIVTGYSVEGTMARDIQNSP 373
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 156/354 (44%), Gaps = 30/354 (8%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ G + P++ + P L L + D + RR L + + K
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DYW
Sbjct: 199 LISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++ PIYF + ++ Y K + W ++ + T N F K+V L +A
Sbjct: 259 NIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRSLIHA 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
P GP ++ A L AG S ++F WA NLV GT+ L A P
Sbjct: 315 P-GPCVLFAIPGMLCAGLSLEVFKHWAPSPLNLVALLGYSVAGTVGHKLMAGKP 367
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 161/332 (48%), Gaps = 38/332 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------- 96
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 64 SKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRT 123
Query: 97 -------------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 143
+Y +S R+ + ++H + + +GI + AGH+LG ++
Sbjct: 124 EGGGSTSSNDEGGNIYTDDDIFKSFDRIE-TIDFHSTMEVDGIRFTAYYAGHVLGACMYL 182
Query: 144 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 202
I G +++ DY+R + +HL + V+P VLIT++ PR + E +
Sbjct: 183 IEIGGLKILFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPRAELETKLTNH 241
Query: 203 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 260
I TL GG VLLPV + G ELLLIL++YW ++ N +Y+ + ++ + +++
Sbjct: 242 IHATLTKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETY 301
Query: 261 LEWMGDSI--TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 318
M D I + S + S+ + F K++ + N S+ + GP +V+A+ L+AG S
Sbjct: 302 TGIMNDKIRLSSSSDDSKSSPFDFKYIKSIRNLSKFSDL--GPSVVVATPGMLQAGVSRQ 359
Query: 319 IFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ +WA + KNLV+ T GT+A+ L +P
Sbjct: 360 LLEKWAPEQKNLVILTGYSVEGTMAKDLLKEP 391
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 153/347 (44%), Gaps = 51/347 (14%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG------LSAPVFSTEPVYRLGLLT 97
L+ L ++ ID V++SH H+GALP+ + L +S P + P+ L
Sbjct: 159 LINNLKRINEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCR 218
Query: 98 MYDQYLSRRSVTR------------LTYSQN--------------YHLSGKGEGI----- 126
+ D +++ R L Y+ N Y+ K G+
Sbjct: 219 VTDMKWEKKNFERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINET 278
Query: 127 ------VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
+ P+ AGH+LG ++KI VIY DYN +KHL + S + P + I
Sbjct: 279 FELGDMSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPS-LNPEIFI 337
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
+++ A + +P ++ E+ + + + + GG VL+PV + GR EL ++L+DYW + +
Sbjct: 338 SESTYATYVRPTKKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKI 397
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
+YPIYF ++ + Y K + W+ S ++N F +++ +N
Sbjct: 398 HYPIYFGCGLTENANKYYKIYSSWINSS---CMSNEKENLFDFANISPFLNNYL---NEK 451
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ L G S F WA + +NL++ GT+ L
Sbjct: 452 RPMVLFATPGMLHTGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKL 498
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL-----KQHCLKHVC 570
++V C +I++ + AD I+ ++ HV+P ++ VHG + L +H + +C
Sbjct: 513 IKVLCKIIYLSFSAHADSNGIQQLIKHVSPKNVIFVHGEKNGMQKLAKYISNKHMINSMC 572
Query: 571 P 571
P
Sbjct: 573 P 573
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 150/346 (43%), Gaps = 58/346 (16%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNY 117
V++SH H GALPY + +G + P++ T P + + + D R+ N+
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDM---RKVAVERKGESNF 120
Query: 118 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 177
S ++ KD + AV T+ +S + +
Sbjct: 121 FTS----------------------QMIKDCMKKVIAV------------TLHQSVMVDS 146
Query: 178 VLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
L AY A H MF + + + GG VL+PV + GR EL ++LE YW
Sbjct: 147 ELEIKAYYAGH----VLGAAMFW--VHECIDRGGKVLIPVFALGRAQELCILLETYWERM 200
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
+L P+YF ++ +Y K F+ W I K+F + N F KH+ +K+ +DN
Sbjct: 201 NLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQRNMFDFKHIKPF-DKAYIDNP 257
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 340
G +V A+ L AG S IF +WA + N+V+ F +G G
Sbjct: 258 --GAMVVFATPGMLHAGLSLQIFKKWAPNESNMVIMPGFCVQGTVG 301
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK+ +
Sbjct: 315 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEYLKEKIKQEFGV 374
Query: 572 HVYTPQIEETIDVTS 586
Y P ET +T+
Sbjct: 375 SCYNPANGETCIITT 389
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 50/347 (14%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
++ + L+ + +T+D ++SH H+GALP+ +QL + PV+ T P L + + D
Sbjct: 94 AMERTLNDLTNTLDCAIISHFHLDHVGALPFLTEQLKFNGPVYMTWPTKALSPILLRDSA 153
Query: 101 QYLSRRSVTR----------LTYSQNYHLSGKGE-------------------------- 124
Q ++R+V + + H KG
Sbjct: 154 QVTAQRTVKQDKENLRNLLNMRTDSESHKRRKGADDPWGYNLGPATESVKKAIALQLQET 213
Query: 125 ----GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
I + P+ AGH+LG ++ + DG V+Y D+N +KHL + P VLI
Sbjct: 214 RHIGNIKITPYYAGHVLGAAMFHVECDGFSVLYTGDFNTVPDKHLGPAKVPRLC-PDVLI 272
Query: 181 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 239
++ A + PR+ EM + TL GG VL+PV + GR EL +IL+ YW++ L
Sbjct: 273 CESTYATVVRQPRKATEMELCTVVHDTLLKGGKVLIPVFAVGRAQELAIILDSYWSKLEL 332
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299
YPIYF +S +Y K W + + +N F + ++ N +N
Sbjct: 333 KYPIYFGGGLSEKATNYYKLHSCWTNE---HNIPGLNENTFSMSYIQPFDNGYLNENR-- 387
Query: 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P ++ A+ + AG S WA + NL++ GT+ L
Sbjct: 388 -PMVLFATPGMVHAGLSLRACKLWAPNPNNLIVIPGYCVQGTVGNKL 433
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 507 SKVVSNELTVQ-------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 559
+K++S E +Q VKC + ++ + AD I + V+P ++LVHG +E+ +
Sbjct: 431 NKLISGEKVIQTSAGPINVKCKVRYLSFSAHADSAGIIQLARQVSPKNILLVHGESESMK 490
Query: 560 HLKQHCLKHV------CP-HVYTPQIEE 580
+H L H+ CP + YT + E+
Sbjct: 491 KFSKH-LNHILGVPVHCPANGYTVEFEK 517
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 150/339 (44%), Gaps = 56/339 (16%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
+L + L+ + S ID ++SH H+GALP+ + LG PVF T P LG + + D
Sbjct: 109 ALKKSLNDITSNIDCAIISHFHLDHIGALPFLTEHLGYKGPVFMTYPTRGLGPIMLRDSA 168
Query: 101 QYLSRR--------SVTR--------------LTYSQ-------NYHLSGKGEGIV---- 127
Q ++ R S TR LT Q Y + + +
Sbjct: 169 QVVTSRFRDAIETESSTRGASILLNRNKKRKPLTAEQLDRFDPWGYTVDCVADSLSRAHV 228
Query: 128 -------------VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174
+ P+ AGH+LG ++ + DG V+Y D+N +KHL + S +
Sbjct: 229 MQLKSSQTLGNMRITPYYAGHVLGAAMFLVECDGISVLYTGDFNMTPDKHLGPARVPS-L 287
Query: 175 RPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
P ++I ++ Y ++ Q R + L AGG VL+PV + GR EL +IL+ Y
Sbjct: 288 NPDIMICESTYASIIRQARRSTEMELCTVVHDCLLAGGKVLIPVFAVGRAQELAIILDTY 347
Query: 234 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
W++ L +PIYF +S Y K W + +++ DN F L+H+ N
Sbjct: 348 WSKLQLRFPIYFGGGLSERATSYYKLHSLW---TDSRNIPNMGDNCFSLEHMLPFENSFL 404
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
+ D P ++ A+ + +G S WA + KNL++
Sbjct: 405 TE---DRPMVLFATPGMVHSGLSLKACKLWAPNPKNLIV 440
>gi|149245580|ref|XP_001527267.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449661|gb|EDK43917.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1067
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 123/465 (26%), Positives = 201/465 (43%), Gaps = 89/465 (19%)
Query: 16 ENPLSYLVSIDGFN----FLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA- 70
EN S+ S+ F+ L D W+ D +++ + + +IDA+++SH T +
Sbjct: 11 ENDRSFKASLLTFDNEHRILADPSWSGS-DALVVKFMEQYLPSIDAIIISHSTTEFISGY 69
Query: 71 --LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSV 108
L ++ L+ PV+ST PV +LG ++ + Y S+
Sbjct: 70 ILLCIYFPKIMLTIPVYSTLPVNQLGRISTVEYYRSQGVLGPVLSSLIELDEIDNWFDKF 129
Query: 109 TRLTYSQNYHLS-GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN- 166
+ Y QN L GK + + P+ +GH LGGT W I K + VIYA +N ++ LN
Sbjct: 130 KTVKYLQNITLCDGK---LTMTPYNSGHSLGGTFWLIVKRIDRVIYAPSWNHSRDSLLNN 186
Query: 167 --------GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 218
G +RP +T A + N +++ E F + TL GG ++P
Sbjct: 187 AGFINTQTGMPHVGLLRPTAFVTGA-DLGSNLSHKKRCEKFLQLVDATLNNGGAAIIPTS 245
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF--ETSR 276
+GR LEL +++ + + P+YF +Y + + Y ++WM S K++ E R
Sbjct: 246 ISGRFLELFHLVDQHLKGAPI--PVYFFSYSGTKILSYASGLMDWMSSSFNKAWNIENLR 303
Query: 277 DNA--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 333
D+ F V LL++ SEL GPK++ S L G S +F+ +D K V+
Sbjct: 304 DDQLPFNPSKVDLLLDPSELMQM-RGPKIIFCSGIDLTNGDLSSKVFLYLCNDEKTTVIL 362
Query: 334 TERGQFGTLARMLQADPPPKA-----------VKVTMSRR--------VPL--------- 365
TE+ +L LQ D VK+ SR VPL
Sbjct: 363 TEK---PSLLLALQKDSGNSMASISKELYNNWVKLAKSRTGKATDGVAVPLETVLKLDQW 419
Query: 366 ------VGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDN 404
GE+LI + E T +KE+ + + V++++ + L DN
Sbjct: 420 MVEEEVTGEDLINFRNEITAKRKEKLI--AKVRDQKIQNLLNTDN 462
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 28/368 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN 116
+ ++H H +LPY + + V T P + ++ ++ S + S N
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEI-FGELFKEFHQMSSTIQPPKSVN 134
Query: 117 ------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+H + G+ + AGH+LG ++ I +G ++Y D++ ++H
Sbjct: 135 PKEVMDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRH 194
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
L + F ++ Y + + + F I + L+ GG L+PV S GR
Sbjct: 195 LQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIMEILKRGGKCLIPVFSLGRAQ 254
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
E LILE+YW H + I+F + ++ Y + F +M + K + + D F+
Sbjct: 255 EFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQDLRKKTKQAFDFKFIR 314
Query: 283 KHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+ + S D A D P +V+AS L+ G S IF W +D KN V+ GT
Sbjct: 315 EGSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGT 369
Query: 342 LARMLQAD 349
LA+ L D
Sbjct: 370 LAKDLILD 377
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 159/367 (43%), Gaps = 26/367 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSR--------- 105
+ ++H H +LPY + + V T P + L + Q S
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNP 135
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
+ V + +H + G+ + AGH+LG ++ I +G ++Y D++ ++HL
Sbjct: 136 KEVIDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHL 195
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLE 225
+ F ++ Y + + + F I + L+ GG L+PV S GR E
Sbjct: 196 QAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQE 255
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
LILE+YW H + I+F + ++ Y + F +M + K + + D F+ +
Sbjct: 256 FELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKTKQAFDFKFIRE 315
Query: 284 HVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
+ S D A D P +V+AS L+ G S IF W +D KN V+ GTL
Sbjct: 316 GSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGTL 370
Query: 343 ARMLQAD 349
A+ L D
Sbjct: 371 AKDLILD 377
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 28/368 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQN 116
+ ++H H +LPY + + V T P + ++ ++ S + S N
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEI-FGELFKEFHQMSSTIQPPKSVN 134
Query: 117 ------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
+H + G+ + AGH+LG ++ I +G ++Y D++ ++H
Sbjct: 135 PKEVMDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRH 194
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 224
L + F ++ Y + + + F I + L+ GG L+PV S GR
Sbjct: 195 LQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQ 254
Query: 225 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
E LILE+YW H + I+F + ++ Y + F +M + K + + D F+
Sbjct: 255 EFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKTKQAFDFKFIR 314
Query: 283 KHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
+ + S D A D P +V+AS L+ G S IF W +D KN V+ GT
Sbjct: 315 EGSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGT 369
Query: 342 LARMLQAD 349
LA+ L D
Sbjct: 370 LAKDLILD 377
>gi|402696937|gb|AFQ90657.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Dibamus sp. JJF-2012]
Length = 220
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NY 241
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 65 YGTHIHEKREEREARFCNXVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHXXLHDI 124
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 301
PIY+ + ++ + ++++ M D I K +N F+JKH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRKXXXI--NNPFVJKHISNLKSMDHFDDI--GP 180
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 10/217 (4%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG ++ I + ++Y DYN ++HL ++ RP +LI+++ A
Sbjct: 49 IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYAT 107
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + + + GG VL+PV + GR EL ++LE YW +L P+YF
Sbjct: 108 TIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFA 167
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
++ +Y K F+ W I K+F + N F KH+ +K+ +DN G +V A
Sbjct: 168 LGLTEKANNYYKMFITWTNQKIKKTF--VQRNMFDFKHIKPF-DKAYIDNP--GAMVVFA 222
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 340
+ L AG S IF +WA + N+V+ F +G G
Sbjct: 223 TPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 259
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 512 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 571
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 273 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 332
Query: 572 HVYTPQIEETIDVTS 586
+ Y P ET +T+
Sbjct: 333 NCYNPANGETCVITT 347
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 61/360 (16%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
+L + L V +++D ++SH H+GALP+ + +G S P++ T P L L + D
Sbjct: 105 ALKKALKNVTNSVDCSVISHFHLDHVGALPFLTEHIGYSGPIYLTYPTRALCPLLLRDSV 164
Query: 101 QYLSRRSV---------------------TRLTYSQN-------------YHLSGKGE-- 124
Q S R+V T TY+ + Y L+ E
Sbjct: 165 QVTSTRTVPDDPNTISSINASVKSLLNCHTNTTYNTDKRRKIEERTDPWGYSLNSVAECM 224
Query: 125 ---------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169
+ + P+ AGH+LG +++ DG V+Y D+N +KHL G
Sbjct: 225 KRSIPLQLRATETVGNLNLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHL-GPA 283
Query: 170 LESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+ P VLI ++ A + ++ EM + TL GG VL+PV + GR EL +
Sbjct: 284 KVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHDTLINGGKVLIPVFAVGRAQELAI 343
Query: 229 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 288
IL +YW S+++PIYF +S +Y K W ++ S R+N F L+++ L
Sbjct: 344 ILNNYWNNLSISFPIYFGGGLSEKATNYYKLHSSWTNNN---SITNLRENPFSLRNL-LQ 399
Query: 289 INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 348
++S L++ + P ++ A+ + G S W+ + NL+L GT+ L A
Sbjct: 400 FDQSFLND--NRPMVLFATPGMVHTGLSLKACKLWSQNPNNLILIPGYCVQGTVGNKLIA 457
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%)
Query: 491 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 550
G +G+ L A + +N + +KC + ++ + AD I ++ H+ P +V
Sbjct: 444 GYCVQGTVGNKLIAGEKTIKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKHIRPKNIVF 503
Query: 551 VHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSD 587
VHG E+ + +H + VY P +TI T D
Sbjct: 504 VHGELESMKRFSKHINNTLKIPVYYPCNGQTIKFTKD 540
>gi|323453344|gb|EGB09216.1| hypothetical protein AURANDRAFT_71470 [Aureococcus anophagefferens]
Length = 1101
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 9/256 (3%)
Query: 98 MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+YD+ R R+ ++H + EGI + AGH+LG ++ I G ++Y DY
Sbjct: 20 LYDEEDLARCCDRVELV-DFHQVVEHEGIRFWSYNAGHVLGAAMFMIEIGGVRLLYTGDY 78
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLP 216
+ +++HL + + + P VLI ++ R RE +F I + ++ GG L+P
Sbjct: 79 SLEEDRHLVPAEVPT-LEPHVLIMESTYGTQKHESRDVREALFTSTIERIVQRGGRCLIP 137
Query: 217 VDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW E P+++ + ++S + ++++ M + +
Sbjct: 138 VFALGRAQELLLILDEYWKEREDLQRVPVFYASKMASRALRVYQTYINMMNMHVRDQMDI 197
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
S N F HV L + +LD++ GP +VLA+ L++G S +F WAS +N V+
Sbjct: 198 S--NPFKFDHVQNLASIDDLDDS--GPVVVLAAPGMLQSGVSRQLFDRWASSERNGVVIA 253
Query: 335 ERGQFGTLARMLQADP 350
GTLA+ + ++P
Sbjct: 254 GYSVEGTLAKQILSEP 269
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 29/339 (8%)
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLT-YSQNYHLSG 121
H ALPY + + VF T + + D + S R T Y++ HLS
Sbjct: 135 HSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQDHLST 194
Query: 122 -------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
I + P AGH+LG ++ I+ G ++++ DY+R +++HL
Sbjct: 195 LPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPA 254
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ V+ VLIT++ + + PPR +RE AI+ L GG VL+PV + GR ELL
Sbjct: 255 EVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRVLMPVFALGRAQELL 314
Query: 228 LILEDYWAEHS--LNYPIYFL--TYVSSSTIDYVKS-FLEWMGDSITKSFETSRDNAFLL 282
LIL++YW H PIY++ T + D +K F + M ++ ++ +
Sbjct: 315 LILDEYWETHPELQKIPIYYIGNTARRCAMNDNIKRLFRQRMAEAEASGDKSVSAGPWDF 374
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
+ V L + D+ G ++LAS L+ G S ++ WA + +N V+ T GT+
Sbjct: 375 RFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTM 432
Query: 343 ARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQTRL 380
A+ + + P+ + MSR LV + A EE+ ++
Sbjct: 433 AKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQKV 469
>gi|340545979|gb|AEK51788.1| cleavage and polyadenylation specific factor 3 [Heteronotia binoei]
gi|402696941|gb|AFQ90659.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Malaclemys terrapin]
gi|402696943|gb|AFQ90660.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Testudo hermanni]
Length = 220
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 241
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 65 YGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDI 124
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 301
PIY+ + ++ + ++++ M D I K + + +N F+ KH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNPFVFKHISNLKSMDHFDDI--GP 180
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|315054255|ref|XP_003176502.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
gi|311338348|gb|EFQ97550.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
Length = 1024
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 58/269 (21%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G V+E
Sbjct: 190 GLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQ 249
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI A P R++R+ + D I ++ GG VLLP DS+ RVLE+ +
Sbjct: 250 LRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRSSVAKGGTVLLPTDSSARVLEIAYV 309
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W E + N P+Y + T+ +S LEWM ++I + FE
Sbjct: 310 LEHAWREAADSGDPNDPLKNAPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEV 369
Query: 274 -----------------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLA 306
S+ +A F KH+ L+ +K++LD GPK++L+
Sbjct: 370 TAGKAAGGAANQSSKGAQSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILS 429
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTE 335
SLE G S I A +NL++ TE
Sbjct: 430 PDTSLEWGLSKHILKHIAEGSENLIIMTE 458
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 58/236 (24%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G+ + T L C
Sbjct: 743 PSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGGTKDETMALAAEC 802
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ + V+TP + +T+D + D A+ V+LS L+ + ++ + +
Sbjct: 803 RSLLAANRGAGTTSTTKLGVDVFTPLVGDTVDASVDTNAWIVRLSRPLVRRLKWQTVSNL 862
Query: 612 EI------------------------------AW-----VDAEVGKT-----ENGMLSLL 631
+ AW V+++ ++ + +L +L
Sbjct: 863 GVVALMGNLQSSQAILLQEEILEQAKSKGKGEAWKATGPVESQANQSLIKNEKIPVLDIL 922
Query: 632 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
P S A K + VGDL+++DL+ + S G EF G G L +V +RK G
Sbjct: 923 PASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDGFVAVRKAG 978
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV G + + Y S
Sbjct: 87 YATIPVIAFGRTYLQNLYAS 106
>gi|403418874|emb|CCM05574.1| predicted protein [Fibroporia radiculosa]
Length = 826
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 154/344 (44%), Gaps = 60/344 (17%)
Query: 423 DVVEPHGGRYRDILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDY 472
D EP DI + G V +TS MFP+ E D++GE ++ +
Sbjct: 486 DSDEPMRALSFDIYLKGNVARTTSFFKSAEGQSQRFRMFPYVEKKRRVDEYGETVDVGMW 545
Query: 473 IIKDEDMDQAAMHIGGDD-GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRA 531
+ K + +++ A + + E A + PSK ++ E+ VQ+ C L F+D EG
Sbjct: 546 LRKGKVLEEDAESEETKELRRKAEEEAKKVPVELPSKFITTEVDVQLACRLFFVDLEGLN 605
Query: 532 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLC 589
DGR++KTI+ V P K+++VH + T+ L + C ++ + +Y P E I +
Sbjct: 606 DGRAVKTIVPQVNPRKMIVVHAPSNYTDALIESCSNIRAMTKDIYAPAQGECIQIGQHTN 665
Query: 590 AYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PISTPAPPH-------- 640
++ + LS++L++++ + D E+ +V + + + +L P+S +
Sbjct: 666 SFSISLSDELLTSLKMSQFEDNEVGYVTGRIASLASSTIPVLEPVSFTSAQFEAKSRKSL 725
Query: 641 --------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
+S ++G+LK+ LK L++ G+ E G G L CG A
Sbjct: 726 QSRMLGSRPTLTLPQSTMIGELKLTALKSRLATVGVHAELIGEGVLICG----------A 775
Query: 686 GQKGGGSGTQ-------------QIVIEGPLCEDYYKIRAYLYS 716
K GGSG ++ +EG + + YY +R +Y+
Sbjct: 776 AAKKGGSGESLEDSVTVKKMTRGRVELEGSVSDIYYTVRKEIYN 819
>gi|71661559|ref|XP_817799.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70883012|gb|EAN95948.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 625
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)
Query: 117 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
YH GI P AGH+LG ++ + G +Y D++R ++HL G + S+ P
Sbjct: 27 YHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SP 85
Query: 177 AVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
+LI ++ N + R++RE +F + ++ GG L+PV + GR ELLLILE+YW
Sbjct: 86 DILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWE 145
Query: 236 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293
H + PIY+ + ++ + ++F+ M D + + R N F+ K++ L+
Sbjct: 146 AHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRS 204
Query: 294 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
++ GP +VLAS L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 205 FEDT--GPCVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 259
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 161/361 (44%), Gaps = 34/361 (9%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
+VS G + + DCG + F P+ STID L++H H GA PY +
Sbjct: 41 VVSFKGRSVMFDCGIHPAFSGIGSLPVFDAIDVSTIDLCLITHFHLDHSGATPYFVSLTD 100
Query: 80 LSAPVFSTEPVYRLGLLTMYD----------------------QYLSRRSVTR---LTYS 114
+ VF TEP + L D + + + + +T
Sbjct: 101 FNGKVFMTEPTKAICKLVWQDYARVNKFSAGSIESEEAPLSSINLYTEKDIEKAINMTEI 160
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174
++ + +GI + + AGH+LG ++ + G ++Y DY+R ++H+ + +
Sbjct: 161 IDFRQQVELDGIRFSCYGAGHVLGACMFLVEIGGVRILYTGDYSREDDRHVPRAEIPP-I 219
Query: 175 RPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
VLI ++ PR RE F + + G LLPV + GR ELLLILE++
Sbjct: 220 DVHVLICESTYGTRIHEPRIDREKRFLGGVQSIITRKGKCLLPVFAIGRAQELLLILEEH 279
Query: 234 WAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 291
W+ N PI + + +S + ++++ GDS+ + + N F ++ + +
Sbjct: 280 WSRTPSIQNVPIIYASPMSIKCMRVFETYINQCGDSVRRQADLGI-NPFQFNYIKTVNSL 338
Query: 292 SELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD 349
+E+ + GP +V+A+ L+ G S DIF WA D +N ++ T GT A L+ +
Sbjct: 339 NEIKDIIYNPGPCVVMAAPGMLQNGTSRDIFEIWAPDKRNGIILTGYAVRGTPAYELRKE 398
Query: 350 P 350
P
Sbjct: 399 P 399
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 155/343 (45%), Gaps = 62/343 (18%)
Query: 67 HLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMY---------DQ--YLSRRSVTRLT 112
H G LPY + + G+ A + +T+ +YR L DQ Y R + L
Sbjct: 18 HCGGLPYLLLKTGVRAKCYMTHATKAIYRYLLADFVRVSNSSGVPDQSLYTDRDIIASLD 77
Query: 113 Y--SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
+ ++H + GI AGH+LG ++ I G V+Y D++R++++HL +
Sbjct: 78 RIDTLDFHQELEVNGIKFTAFHAGHVLGAAMFLIEIAGVKVLYTGDFSRQEDRHLMCAEI 137
Query: 171 ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
VRP VLIT+A +H R+ RE F + + GG L+P + GR EL+LI
Sbjct: 138 PH-VRPDVLITEATYGIHIHDKREDREARFTRLVHDIVGRGGRCLIPAFALGRAQELMLI 196
Query: 230 LEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT- 286
L++YWA H + PIY+ + ++ + ++++ M + I + + +N F +H++
Sbjct: 197 LDEYWANHPELHDIPIYYASQLARKCMAVYQTYIHAMNEKIRN--QLANNNPFCFRHISN 254
Query: 287 ---------------LLINKSEL----------------DNAP--------DGPKLVLAS 307
L +K+ L N P GP +V+AS
Sbjct: 255 LKAMRSYSISEQTEHALASKAWLYVAYSRFPVIGTVAAGTNVPTSIEHFDDSGPCVVMAS 314
Query: 308 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 315 PGMMQSGMSRELFENWCTDRRNGVIIAGYCVEGTLAKQILSLP 357
>gi|449670960|ref|XP_004207395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Hydra magnipapillata]
Length = 105
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 73/102 (71%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ TPLSG +E PL YL+ +D F FL+DCGW+++ +++ + + A +IDAVLL
Sbjct: 1 MTSIIRFTPLSGAQDEGPLCYLLQVDEFKFLLDCGWDENLSQDVIENIKRHAHSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY 102
SHPD HLGALPY + + L+ PV++T PVY++G + +YD Y
Sbjct: 61 SHPDIYHLGALPYLIGKCNLNCPVYATIPVYKMGQMFLYDFY 102
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 67/375 (17%)
Query: 34 CGWNDHFDP------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
C FD +L + L V +++D ++SH H+GALP+ + +G S P++ +
Sbjct: 90 CAVKQEFDKDIYMKNALQKALRNVTNSVDCSIISHFHLDHVGALPFLTEHIGYSGPIYLS 149
Query: 88 EPVYRLGLLTMYD--QYLSRRSV---------------------TRLTYSQN-------- 116
P L L + D Q S R+V T T++ +
Sbjct: 150 YPTRALCPLLLRDSVQVTSTRTVPDDPNSISSINASVKSLLNSHTNATFTPDKRRKIEEK 209
Query: 117 -----YHLSGKGE-----------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 154
Y L+ E + + P+ AGH+LG +++ DG V+Y
Sbjct: 210 ADPWGYTLNSVAECMKRSIPLQLRATETVGNLNLVPYYAGHVLGASMFLSECDGFKVLYT 269
Query: 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 213
D+N +KHL G + P VLI ++ A + ++ EM + +TL GG V
Sbjct: 270 GDFNTIPDKHL-GPAKVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHETLINGGKV 328
Query: 214 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
L+PV + GR EL +IL +YW SL++PIYF +S +Y K W ++ +
Sbjct: 329 LIPVFAVGRAQELAIILNNYWNNLSLSFPIYFGGGLSEKATNYYKLHSSWTNNN---NIT 385
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
R+N F L+++ L ++S L++ + P ++ A+ + G S W+ + NL+L
Sbjct: 386 NLRENPFSLRNL-LQFDQSFLND--NRPMVLFATPGMVHTGLSLKACKLWSQNPSNLILI 442
Query: 334 TERGQFGTLARMLQA 348
GT+ L A
Sbjct: 443 PGYCVQGTVGNKLIA 457
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
+ + +N + +KC + ++ + AD I ++ H+ P +V VHG E+ + +H
Sbjct: 466 REKSIKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKHIRPKNIVFVHGELESMKRFSKH 525
Query: 565 CLKHVCPHVYTPQIEETIDVTSD 587
+ VY P +TI T D
Sbjct: 526 INSTLKIPVYYPSNGQTIKFTKD 548
>gi|366991851|ref|XP_003675691.1| hypothetical protein NCAS_0C03360 [Naumovozyma castellii CBS 4309]
gi|342301556|emb|CCC69326.1| hypothetical protein NCAS_0C03360 [Naumovozyma castellii CBS 4309]
Length = 814
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 168/780 (21%), Positives = 314/780 (40%), Gaps = 130/780 (16%)
Query: 22 LVSIDGFNFLIDCGWND----HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--LPYA- 74
++ D LID GW + D ++ S + ID +L+S P LGA L Y
Sbjct: 19 ILKFDNVTILIDPGWTSTEVSYVD--CVKYWSNLIPEIDVILISQPTIECLGAYTLLYEN 76
Query: 75 -MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR---------------------RSVTRLT 112
+ V++T PV LG ++ + Y S+ + L
Sbjct: 77 FLSHFLSRIAVYATLPVANLGRVSTIEWYASQGIIGPFLDSNKMEVEDIEAAFDHIQILK 136
Query: 113 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN------ 166
YSQ L K +G+ +G GG++W I+ E ++YA +N ++ LN
Sbjct: 137 YSQMIDLRSKFDGLTFFALNSGVNPGGSIWCISTYSEKLVYAPRWNHTRDTILNAASLLD 196
Query: 167 --GTVLESFVRPAVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 222
G L + +RP+ +IT D + ++ +P +++ +F+D++ K L G L+P+D G+
Sbjct: 197 NMGKPLSTLMRPSGIITSFDKFGSV--KPYKKRARIFKDSLKKALSNNGTALIPIDIGGK 254
Query: 223 VLELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SR 276
L++ +++ D+ E+ N PI ++Y + Y KS LEW+ ++ K++E+ S
Sbjct: 255 FLDVFVLVHDFLYENLKNGMFNRLPILLVSYSRGRALTYAKSMLEWLSSTLLKTWESRSN 314
Query: 277 DNAFLL--KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ F L + ++ EL+ K+ S +D+F + S + VL T
Sbjct: 315 ETPFELGGRFEFKVVTPDELNRYSGSSKICFVSQVD---PLLNDVFDKLGSMEQTTVLLT 371
Query: 335 ERGQ---------FGTLARMLQADPP--------PKAVKVTMSRRVPLVGEELIAYEE-- 375
+ F ++M + + V V R L E++ ++E
Sbjct: 372 SKYNGNQYVPSIMFNQWSKMEKEQGVQEGESLNFAQTVAVKKVRFSTLNAEDVEKFQEMT 431
Query: 376 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI 435
+Q +++KE+ K + ++S S + + + + +P R +D
Sbjct: 432 KQRKIEKEQLKKGDDFR-QKSITSFNGGPTSGQNEGAEEQDEDEDEDEDEDPLSSRTQD- 489
Query: 436 LIDGFVPP------STSVA--PMFPFYENNSEWDDFGEVINPDDYIIKDED--------- 478
F P TS+ MF F+ + DD+G + + + I KD++
Sbjct: 490 -TQKFQTPVDVILQKTSLLKHKMFQFHPVKIKRDDYGTIFDFNMLIPKDQEEIEETSKSK 548
Query: 479 ----------MDQAAMHIGGDDGKLDEGSASLIL------------DAKPSKVVSNELTV 516
D+ + K +G+ L + + S+ +NE +
Sbjct: 549 RRAIIHSDSAHDEDSYDPAKQINKKRKGTPELEMNNFDNLSYLDTSNTVKSRSETNEQLI 608
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTP 576
++C++ +I+ E D RS I + KL+ + G E + + L+
Sbjct: 609 -LRCMITYINLESLVDQRSASVIWPSLRARKLI-IQGPEEVQDEKLINMLRKKGTDTLVL 666
Query: 577 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------TENG 626
+ E ++ T+ + ++ L L S + ++K+ D Y +A V + T
Sbjct: 667 PLGEDVEFTTTIKTLEISLDPDLDSLLKWQKISDRYTVAHVTGHLVNEKSLVNGQPTSKS 726
Query: 627 MLSLLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 683
L L P+ H S + VGD+++ +LK L+ EF G G L + V + KV
Sbjct: 727 KLVLKPMDNITKIHASGTLSVGDVRLVELKRKLTEIHHVAEFKGEGMLVIDDKVAVMKVS 786
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 46/333 (13%)
Query: 47 PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR 106
P +DA +++H H GALP + L V+S E D S
Sbjct: 355 PRGIFTHAVDACVVTHFHLDHCGALPTFTEYLD----VWSFE---------QSDVAASAE 401
Query: 107 SVTRLTYSQNYHLSGKGE-GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
T L + + G E + + P AGH+LG ++++ V+Y D+N ++HL
Sbjct: 402 RATALRLREAWREGGASEDALQLTPFYAGHVLGAAMFELKIGNTSVVYTGDFNTIPDRHL 461
Query: 166 NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 224
L +RP VLI++ A +P ++ E F + TL GG VL+PV + GR
Sbjct: 462 GSASLPC-LRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGGKVLIPVFAVGRAQ 520
Query: 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW----------MGDSITKSFET 274
EL ++LE+YW L++PIYF ++ Y + ++ W GD + S
Sbjct: 521 ELCMLLENYWERMHLHFPIYFAGGMTERANVYYRLYVHWSKANGSVDAGAGDELPTS--- 577
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
AF H+ L +S L +AP P ++LA+ L G + WA D NLVL
Sbjct: 578 ----AFSFPHI--LPFQSSLLSAPT-PLVLLATPGMLHGGLALKALKAWAGDQANLVLLP 630
Query: 335 ERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG 367
GT+ ML + R++PL G
Sbjct: 631 GYCVRGTVGAML----------IAGQRQIPLDG 653
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
T+ VKC + ++ + AD I+ ++ + P +VLVHG + E L + VY
Sbjct: 656 TLNVKCRIRYMSFSAHADSLGIQQLILNTQPRSVVLVHGEKDGMEKLANVIRRDFNTPVY 715
Query: 575 TPQIEETIDV 584
TP +TI +
Sbjct: 716 TPATGQTISI 725
>gi|302661813|ref|XP_003022569.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
gi|291186522|gb|EFE41951.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
Length = 1024
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 121/269 (44%), Gaps = 58/269 (21%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G V+E
Sbjct: 190 GLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQ 249
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI A P R++R+ + D I GG VLLP DS+ RVLE+ +
Sbjct: 250 LRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYV 309
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W E + N P+Y + T+ +S LEWM ++I + FE
Sbjct: 310 LEHAWREAADSEDSNDPLKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEA 369
Query: 274 -----------------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLA 306
S+ +A F KH+ L+ +K++LD GPK++L+
Sbjct: 370 TTGKAAGGASNQPSKGAQSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILS 429
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTE 335
SLE G S + A +NL++ TE
Sbjct: 430 PDTSLEWGLSKHVLKHIAEGNENLIIMTE 458
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 58/248 (23%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 554 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 600 MSNVLFKKLGDYEI------------------------------AW-----VDAEVG--- 621
+ + ++ + + + AW V+++
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQYL 910
Query: 622 -KTEN-GMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
K E +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 676 YVTIRKVG 683
+V +RK G
Sbjct: 971 FVAVRKAG 978
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRAYPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV G + + Y S
Sbjct: 87 YATIPVIAFGRTYLQNLYAS 106
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 148/317 (46%), Gaps = 35/317 (11%)
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLT-YSQNYHLSG 121
H G+LPY + + VF T + + D S S R + Y+++ HLS
Sbjct: 86 HSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNEHDHLST 145
Query: 122 -------------KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
I + P AGH+LG ++ I+ G ++++ DY+R +++HL
Sbjct: 146 LPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLISA 205
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+ V+ V+IT++ + + PPR +RE +++ + GG VL+PV + GR ELL
Sbjct: 206 EVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALGRAQELL 265
Query: 228 LILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------ 279
LIL++YW+ H PIY++ ++ + ++++ M ++I + F A
Sbjct: 266 LILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEAEARGDK 325
Query: 280 ------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+ + V L N ++ G ++LAS L+ G S ++ WA + +N V+
Sbjct: 326 SVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSRELLERWAPNERNGVIM 383
Query: 334 TERGQFGTLARMLQADP 350
T GT+ + + +P
Sbjct: 384 TGYSVEGTMGKQIINEP 400
>gi|47229058|emb|CAG03810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 698
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 10/238 (4%)
Query: 100 DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159
DQ L RRS R H SG G G + + I DGE + DYN
Sbjct: 193 DQGLLRRS--RPGSRHGAHQSGLGVGGLHGECELAPARRSSSSSIRVDGE-LSQQGDYNM 249
Query: 160 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 218
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 250 TPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLIPVF 308
Query: 219 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N
Sbjct: 309 ALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRN 366
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
F KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V F R
Sbjct: 367 MFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVQFLRR 421
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 159/330 (48%), Gaps = 40/330 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRLG------------ 94
ST+DA+L++H H +L Y M++ V+ T P VYRL
Sbjct: 60 STVDALLITHFHLDHAASLTYIMEKTNFKDGKGKVYMTHPTKAVYRLMMQDYVRMSAAQS 119
Query: 95 -----LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
L T D ++ + ++++ + G+ P+ AGH+LG +++ I
Sbjct: 120 TSAPPLFTPLDLSITLPLINAVSFATTTTVI---PGLSFTPYPAGHVLGASMFLIQLADL 176
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPA-----VLITDAYNALHNQPPRQQREMFQDAIS 204
++Y DY+R + +HL + + V P ++I + + R++ E F I
Sbjct: 177 RILYTGDYSREESRHL----VRAEVPPGAGIDVLIIESTFGVQSTEGRREKEERFTSLIH 232
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLE 262
+ L GG+VL+PV + G ELLLIL+D++ +H +PIY+ + ++ + + ++
Sbjct: 233 RILMRGGHVLMPVFAVGGAQELLLILDDFFEKHPELHKFPIYYASALARKCMAVYQGYVH 292
Query: 263 WMGDSITKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIF 320
M ++I + F ++ N F+ +HV+ + S E P ++LAS +++G S ++
Sbjct: 293 VMNNNIRQRFANNQ-NPFVFRHVSHIPRSSGWEKKIGEGPPCVILASPGMMQSGASRELL 351
Query: 321 VEWASDVKNLVLFTERGQFGTLARMLQADP 350
WA D +N ++ T G++AR + +P
Sbjct: 352 EMWAPDRRNGIVLTGYSVEGSMARNIMNEP 381
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 167/368 (45%), Gaps = 42/368 (11%)
Query: 5 VQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
+++TPL G NE S + + L+D G + F P V IDA+ ++
Sbjct: 7 LKITPL-GAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVIDLHKIDALFVT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPV-----YRLGLLT----------MYDQYLSRR 106
H H GALPY ++ +F T P Y L T MY + +
Sbjct: 66 HFHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKVVNASSNEDMYTEADLKN 125
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
++ ++ +Y K + I V AGH+LG ++ + + ++Y DY+ ++HL
Sbjct: 126 CYNKI-FAIDYFQEIKIKDIKVVSLNAGHVLGAAMFLLKIGSKKLLYTGDYSTEPDRHLK 184
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 225
+ LIT++ + PR++RE F +A+ ++ G VLLPV + GR E
Sbjct: 185 EAKCPGKIN--FLITESTYGVQCHLPREEREKRFLNAVRDIIKRRGKVLLPVFALGRAQE 242
Query: 226 LLLILEDYW--AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-FLL 282
+LLILE+YW E N PIY+ + ++ I I + + S N F
Sbjct: 243 ILLILEEYWDNNEDLQNVPIYYASALARRCI------------GIYQQYSQSDKNVDFKF 290
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342
K++ N + D+ + P +V+AS L++G S D+F +W D +N V+ GTL
Sbjct: 291 KYIR---NINTFDDR-NLPCVVMASPGMLQSGLSRDLFEKWCEDKRNGVIIAGYCVQGTL 346
Query: 343 ARMLQADP 350
A+ + +P
Sbjct: 347 AKEILNEP 354
>gi|402696939|gb|AFQ90658.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Draco beccarii]
Length = 220
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 117/213 (54%), Gaps = 8/213 (3%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW--AEHSLNY 241
H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 65 YGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQXXXXXXEI 124
Query: 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 301
PIY+ + ++ + ++++ M D I K + + +N F+ KH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNPFVFKHISNLKSMDHFDDI--GP 180
Query: 302 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|326473038|gb|EGD97047.1| cleavage and polyadenylylation specificity factor [Trichophyton
tonsurans CBS 112818]
Length = 1024
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 58/269 (21%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G V+E
Sbjct: 190 GLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQ 249
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI+ A P R++R+ + D I GG VLLP DS+ RVLE+ +
Sbjct: 250 LRKPTALISSASGGDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYV 309
Query: 230 LEDYW-----AEHS----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W +E S N P+Y + T+ +S LEWM ++I + FE
Sbjct: 310 LEHAWRGAADSEDSNDPLKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEA 369
Query: 274 -----------------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLA 306
S+ +A F KH+ L+ +K++LD GPK++L+
Sbjct: 370 TTGKAAGGTSTQPSKAAQSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILS 429
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTE 335
SLE G S + A +NL++ TE
Sbjct: 430 PDTSLEWGLSRHVLKHIAEGNENLIIMTE 458
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 58/248 (23%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDAESQTLVEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 554 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 600 MSNVLFKKLGDY-------------------EIAWVDAEVGKTENG-------------- 626
+ + ++ + + E+ GK E
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGETWKATGPVESQANQSL 910
Query: 627 -------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
+L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 676 YVTIRKVG 683
+V +RK G
Sbjct: 971 FVAVRKAG 978
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ--LGLSAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L + P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV G + + Y S
Sbjct: 87 YATIPVIAFGRTYLQNLYAS 106
>gi|396081352|gb|AFN82969.1| putative cleavage and polyadenylation [Encephalitozoon romaleae
SJ-2008]
Length = 639
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 25/292 (8%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79
+L+ ID L++CG D S+ P+ + DA+LL+ + GALPY + Q
Sbjct: 20 CHLLEIDNVKILVNCGAPYTMDMSIYTPILPQILSCDAILLTSFGVNYAGALPYIL-QNN 78
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSR------------RSVTRLTYSQNYHLSGKGEGIV 127
VFS+ P+ LG + + D++L ++ + YSQ ++ +
Sbjct: 79 YYNKVFSSVPIKTLGKICL-DEHLKGMGKELEVDTGLFERISEIKYSQPTVINN----VE 133
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
V + +G+ +GG ++KI+K E ++ + N RKE HL+G ++ + + + L
Sbjct: 134 VCAYNSGNSIGGCLYKISKGAEKIVVGFNMNHRKENHLDGIGFSGIGDCSLCVVNGNHVL 193
Query: 188 HNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+R+ MF++ + L +GG V+LPV + R+LE+ LIL + ++ S + L
Sbjct: 194 AENVSIAKRDNMFREMVGNVLDSGGKVILPVKYS-RLLEVALILNNMMSQRS--EKVVCL 250
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL---INKSELD 295
+Y ++ +S +EW G+ ++ F + N F + + + N SE D
Sbjct: 251 SYFGQRFVERARSMIEWAGEKVSSMFSEEKVNPFEFEKIEFIEHYQNISEFD 302
>gi|366999893|ref|XP_003684682.1| hypothetical protein TPHA_0C00920 [Tetrapisispora phaffii CBS 4417]
gi|357522979|emb|CCE62248.1| hypothetical protein TPHA_0C00920 [Tetrapisispora phaffii CBS 4417]
Length = 822
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 177/823 (21%), Positives = 333/823 (40%), Gaps = 170/823 (20%)
Query: 22 LVSIDGFNFLIDCGW--NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALP---YAMK 76
L+ D LID W N ++ S + +D +LLS P LGA Y
Sbjct: 19 LLKFDNVTILIDPAWYSNSVSYSDSVKYWSTIIPEVDLILLSQPTVRSLGAFALIYYNFY 78
Query: 77 QLGLSA-PVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQ 115
+S V+ST PV LG + + Y++R + + YSQ
Sbjct: 79 SHFISQIEVYSTLPVSNLGRTSTIELYVARGITGPYDSNEIDLEDIEKAFDMIQTIKYSQ 138
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG-TVLESFV 174
L K +G+ H +G +GG+++ + E +IYA +N ++ L+G ++L+S
Sbjct: 139 LVDLKSKFDGLTFVAHNSGVNVGGSIFCLMTYTEKLIYAPKWNHTRDMILSGASLLDSAG 198
Query: 175 RP-------AVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+P LITD N + +++ + F+D + + L G++++PV+ + + ++LL
Sbjct: 199 KPISALLGATALITDFSNFASTKSFKRKSKAFKDMLREGLYLNGSIVIPVEISSKFIDLL 258
Query: 228 LILEDYW----AEHSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--F 280
+ +++Y ++ P I ++Y + Y KS LEW ++TKS+E S+D A F
Sbjct: 259 VQVQNYILDAKSQGQKTEPHILLVSYSRGRILTYAKSMLEWFSSTLTKSWE-SKDTASPF 317
Query: 281 LLKHVTLLINKSELDNAPDGPKL------------VLASMASLE-------------AGF 315
L ++ ++ EL N P G K+ V+ ++ LE +
Sbjct: 318 DLGNLLHVVTPKELKNYP-GAKICFVSEVDLLINDVICRLSKLERTSVFLTSTNFEDSSV 376
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
D++ +W + +N + E GQ + + + V L ++L A+ +
Sbjct: 377 VSDMYSKWKLEKQNKKV--EEGQSIIYSESISIRTSEEKV---------LKKKDLEAFTK 425
Query: 376 E-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEP------- 427
E +TR +K + L +LV E + L + N+A A+ D+VE
Sbjct: 426 EIETRREKRKDLIVALVNESKKNKGLTD---------MFRKNSALANTDIVEEGDDDDDD 476
Query: 428 -----------HGGRYRDILIDGFVPPSTSV--APMFPFYENNSEWDDFGEVIN-----P 469
H + + V TS+ MF F + ++ DD+G +++ P
Sbjct: 477 NDDDNDEVVPLHAIKTAVVYPVDTVISKTSLPKNKMFQFQPSRTKTDDYGIMVDYKMFLP 536
Query: 470 DDYIIKDEDMDQAAMHIGGDDGKLDEGSA--------------------------SLILD 503
++ I + + +A G+D D + L +
Sbjct: 537 EEDITESYNKKRAVESGNGEDDPYDVSESLKSYKRRRNGYSNDNVEPKISIDNIEYLETE 596
Query: 504 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 563
PSK V VKC +F++ E D RS I ++ +++ G E +
Sbjct: 597 KNPSKRKIIVPKVSVKCTFVFLNLESLVDQRSASVIWPSFK-IRTMVLFGPPENQNKTLE 655
Query: 564 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD------------Y 611
+ K + + + I ++ + + + + +L + ++ + D
Sbjct: 656 NIFKKKDIDMTLMPLNDVIYFSTTIKSLDISIDPELDELLKWQNIRDGHTVAHFTGRLIK 715
Query: 612 EIAWVDAEVGK-TENGM---LSLLPISTPAPPHK--SVLVGDLKMADLKPFLSSKGIQVE 665
E A ++GK T++ + L+L P+ + + S+ +GD+++A++K L+ + E
Sbjct: 716 EKAQNVKKLGKVTQDSLRTKLTLKPLENRSRVNTGISLSIGDIRLAEIKRKLTKEKYLAE 775
Query: 666 FAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 707
F G G L V +RK+ + +IEGP E Y
Sbjct: 776 FKGEGTLVVDNTVAVRKLNDG----------ETIIEGPPSELY 808
>gi|326477880|gb|EGE01890.1| cleavage and polyadenylylation specificity factor [Trichophyton
equinum CBS 127.97]
Length = 1024
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 122/269 (45%), Gaps = 58/269 (21%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G V+E
Sbjct: 190 GLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQ 249
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI A P R++R+ + D I GG VLLP DS+ RVLE+ +
Sbjct: 250 LRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYV 309
Query: 230 LEDYW-----AEHS----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W +E S N P+Y + T+ +S LEWM ++I + FE
Sbjct: 310 LEHAWRGAADSEDSNDPLKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEA 369
Query: 274 -----------------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLA 306
S+ +A F KH+ L+ +K++LD GPK++L+
Sbjct: 370 TTGKAAGGTSTQPSKAAQSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILS 429
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTE 335
SLE G S + A +NL++ TE
Sbjct: 430 PDTSLEWGLSRHVLKHIAEGNENLIIMTE 458
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 58/248 (23%)
Query: 494 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 553
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDAESQTLVEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 554 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 600 MSNVLFKKLGDY-------------------EIAWVDAEVGKTENG-------------- 626
+ + ++ + + E+ GK E
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGETWKATGPVESQANQSL 910
Query: 627 -------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 675
+L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 676 YVTIRKVG 683
+V +RK G
Sbjct: 971 FVAVRKAG 978
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ--LGLSAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L + P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV G + + Y S
Sbjct: 87 YATIPVIAFGRTYLQNLYAS 106
>gi|303389227|ref|XP_003072846.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
gi|303301989|gb|ADM11486.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
Length = 639
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 136/615 (22%), Positives = 251/615 (40%), Gaps = 106/615 (17%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +G++ +L+ +D LI+CG + D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIRTETGIY-----CHLLEVDNVKILINCGASYTMDMSIYAPILPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL------------SRRSV 108
+ +G LPY + Q VFS+ PV LG + + D++L +
Sbjct: 61 TSFGINCIGGLPYIL-QNNYYNKVFSSVPVKVLGKICL-DEHLRGMGLEAEVDIGCFERI 118
Query: 109 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
+ + YSQ ++ + + + +G+ +GG ++KI+K E ++ + N RKE HL+G
Sbjct: 119 SEIKYSQPTMVND----VEICAYNSGNSIGGCLYKISKGAEKIVVGFNANHRKENHLDGM 174
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
++ + + + L +R+ MF++AI L G V+LPV + R LE+
Sbjct: 175 GFAGVGDCSLCVFNGNHVLAENISIAKRDNMFREAIGSALDLGRKVILPVKYS-RFLEVA 233
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
LIL + + S I L+Y ++ KS +EW G+ ++ F + N F + +
Sbjct: 234 LILNSFMGQRS--EKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKINPFEFEKIEF 291
Query: 288 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ 347
+ G D+ S+ +++ E G L +L
Sbjct: 292 I-------------------------GHYRDV-----SEFDVIIVIDEYVHGGILTTVLH 321
Query: 348 A-DPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNL 406
+ V +T R ++ +E + + RL + + E K G ++
Sbjct: 322 KFNDENNVVFLTDPRMEAIIKKESLGMKWYDFRLVE---------RVNEKKRGNG---DI 369
Query: 407 SGDPMVIDANNANASADVVEPHGGRYR-DILIDGFVPPSTSVAPMFPFYENNSEWDDFGE 465
++ DA +AN + E H R ++ +G +FP +DD+GE
Sbjct: 370 EASVIIDDAPDANGA----ETHWSETRYEVWCEGG-------DEVFPAVSRRRAYDDYGE 418
Query: 466 VINPDDY---IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLL 522
++ + I+ E++ + M + + ++L + K
Sbjct: 419 YMDRSLFVSEILSAEEISEEKMEKEVVVEEREVAGEGIVLKYRVEK-------------- 464
Query: 523 IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETI 582
+D G +D S K I+ ++P KLV + G E TE H K++ I
Sbjct: 465 --MDLMGISDLNSCKMIIETISPKKLVCI-GEDEDTECFFYHTFKYMPCFEDVYMCRSKI 521
Query: 583 DVTSDLCAYKVQLSE 597
++SD+ V+L E
Sbjct: 522 ILSSDVSMGMVKLDE 536
>gi|448516292|ref|XP_003867539.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis Co
90-125]
gi|380351878|emb|CCG22102.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis]
Length = 936
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 44/344 (12%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPVFS 86
L D WN DP + + DA+++SH + L + + PV+S
Sbjct: 29 ILADPSWNG-IDPKAAKFMELHLQQTDAIIISHSTNEFISGYILLCITFPNIMSNIPVYS 87
Query: 87 TEPVYRLGLLTMYDQYLSRRSVTRL--------------------TYSQNYHLSGKGEGI 126
T PV +LG ++ + Y S + L Y QN + + I
Sbjct: 88 TLPVNQLGRISTVEYYRSSGILGPLLSNLVELDEIDYWFDKFIIVKYQQNVTICDRK--I 145
Query: 127 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVRPA 177
+ P+ +GH LGGT W + K + +IYA +N K+ LN G + +RP
Sbjct: 146 TMTPYNSGHSLGGTFWLLVKKIDRIIYAPSWNHSKDAFLNSANFINSTSGNPHLALLRPT 205
Query: 178 VLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
IT A + P +++ E F + TL GG+ ++P +GR LE+ +++++
Sbjct: 206 AFIT-ATDLGSAMPHKKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDEHLKGA 264
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL----KHVTLLINKSE 293
+ P+YFL+Y + + Y S ++WM ++ + N LL V LL++ SE
Sbjct: 265 PI--PVYFLSYSGTKILSYASSLMDWMSSGFNNTWNSDIGNNSLLPFNPSKVDLLLDPSE 322
Query: 294 LDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER 336
L P G K++ + + G S +F +D + V+ TE+
Sbjct: 323 LTQIP-GAKIIFCAGLDFKNGDLSSKVFSYLCNDERTTVILTEK 365
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 630 LLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 688
LL + + AP + +G++++ DLK LSS + VEF G G L + + IRK+ +
Sbjct: 849 LLMVISNAP---RLAIGNIRLPDLKKKLSSLNLNVEFKGEGTLVVNDVLAIRKIAYGSLE 905
Query: 689 GGGSGTQQIVIEGPLCEDYYKIR 711
SG IVI+G YYK++
Sbjct: 906 SDDSG--DIVIDGNAGPLYYKVK 926
>gi|167394445|ref|XP_001733538.1| cleavage and polyadenylation specificity factor [Entamoeba dispar
SAW760]
gi|165894673|gb|EDR22582.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba dispar SAW760]
Length = 688
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P+S L+ I+ L+DCG + +F +++ + S ID VL+SH D H+GALPY +
Sbjct: 16 PVSALLEINSTKILLDCGVDCNFTREIIEKYDSI-SDIDIVLISHSDLRHMGALPYIANK 74
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV--------------TRLTYSQNYHLSGKG 123
+ +++T+PV ++G L M + +++ + R+ + Y L G
Sbjct: 75 -NPNCSIYTTDPVGKMGYLCMKEAIKTQQLIGYPCYRLKDVEQTYKRIFLLEYYKLQKCG 133
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
E + V+ H +G LGGT WKI +++IYAV + + G+ + F RP VL+TD
Sbjct: 134 E-VEVSAHPSGRTLGGTNWKICNGCDEIIYAVGNDLNNGFVIEGSKIMKFNRPMVLLTD- 191
Query: 184 YNALHNQPPRQQREMFQDA---ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 240
+ Q Q EM + I K + G LLPV+ GR++E + ++ + +N
Sbjct: 192 ---IGGQGKCQ--EMLNNVMMEIRKIVLRKGCCLLPVECGGRIMEYMEMVY-ISCDVDIN 245
Query: 241 YPI-----YFLTYVSSSTIDYVKSFLEWMGD 266
I Y ++ V+ + K+ +EW+ D
Sbjct: 246 RVIKDASFYCISSVADQIKEMNKTIMEWVRD 276
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 121/287 (42%), Gaps = 47/287 (16%)
Query: 447 VAPMFPFYENNSEWDDFGEV------INPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASL 500
V +FPF+ N E +G++ +N ++ ++ ++D+D+
Sbjct: 437 VGGLFPFFHNKVETTVYGDISTFKIEMNVEEPLLGNKDVDEVNE---------------- 480
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG-SAEATE 559
++ P K V E + + C + D + I++I++ + P LV V E
Sbjct: 481 -IEDYPRKYVKEEEELIISCTVASYDVSAEMETTKIRSIIARLIPRNLVFVSALEPNGIE 539
Query: 560 HLKQHCLKHVCPHVYTPQIEETIDVTSDLC----AYKVQLSEKLMSNVLFKKLGDYEIAW 615
KQ+ L H ++Y E + + +C + + + L++ + ++ +
Sbjct: 540 WFKQN-LPH--SNIYGFNNNE---IMTTICPVTPSETFTIDDSLLTVMKLNHFKEFNLGP 593
Query: 616 VDAEVGKTENGMLSLLPISTPA-PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 674
+DA K E+G +LLPI+ H+SV +G+L + L + ++ I V+ G + C
Sbjct: 594 IDA---KVEDG--TLLPITRQQRKRHESVYIGELPIKVLTKAIETENIDVKIVNGTIVCA 648
Query: 675 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
G S + ++ G + + ++K+R + QF +L
Sbjct: 649 N-------GTITVSKEPSDVPKFIVRGRMNKAFFKVRKIVAEQFCIL 688
>gi|39645207|gb|AAH13904.2| CPSF3L protein, partial [Homo sapiens]
Length = 429
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLR 208
V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F + +T+
Sbjct: 1 SVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVE 59
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
GG VL+PV + GR EL ++LE +W +L PIYF T ++ Y K F+ W I
Sbjct: 60 RGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKI 119
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
K+F + N F KH+ +++ DN GP +V A+ L AG S IF +WA + K
Sbjct: 120 RKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEK 174
Query: 329 NLVLF 333
N+V+
Sbjct: 175 NMVIM 179
>gi|401826283|ref|XP_003887235.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
gi|392998394|gb|AFM98254.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
Length = 639
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 31/301 (10%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +G++ +L+ ID L++CG D S+ + + DA+LL
Sbjct: 6 VSLTPLIRTDTGIY-----CHLLEIDNVRILVNCGAPYTMDMSIYTSVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL------------SRRSV 108
+ ++GALPY + Q +FS+ P+ LG + + D++L +
Sbjct: 61 TSFGVNYVGALPYIL-QNNYYNKIFSSVPIKVLGKICL-DEHLKGMGMEVEGYTACFERI 118
Query: 109 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
+ + YSQ + + + + +G+ +GG ++KI+K E ++ ++ N RKE HL+G
Sbjct: 119 SEIKYSQPTVIGN----VEICTYNSGNSIGGCIYKISKGAERIVIGLNMNHRKENHLDGI 174
Query: 169 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
++ + + + L +R+ MF++ + L +GG V+LPV + R LE+
Sbjct: 175 GFSGIGDCSLCVVNGNHVLAENISVAKRDNMFREIVGSVLSSGGKVILPVKYS-RFLEIA 233
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
LIL A+ N I L+Y ++ +S +EW G+ ++ F + N F + +
Sbjct: 234 LILNSMMAQR--NERIVCLSYFGQRFVERARSMIEWAGEKVSSMFSEEKVNPFEFEKIEF 291
Query: 288 L 288
+
Sbjct: 292 V 292
>gi|350633583|gb|EHA21948.1| hypothetical protein ASPNIDRAFT_41125 [Aspergillus niger ATCC 1015]
Length = 1015
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 53/264 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 189 GLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 248
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ P R++R ++ D I T+ GG VL+P D++ RVLEL
Sbjct: 249 LRKPTALVCSTRGGERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYA 308
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W + + +Y +++T+ +S LEWM ++I + FE
Sbjct: 309 LEHAWRDAAGSGQGDDVLKGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDA 368
Query: 274 -TSRDNA-------------------FLLKHVTLLINKSELDN--APDGPKLVLASMASL 311
T + N F KH+ +L K L+ + PK++LAS SL
Sbjct: 369 ATGQSNTEGQRAGQNQGKTEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSL 428
Query: 312 EAGFSHDIFVEWASDVKNLVLFTE 335
+ GF+ D A NL+L TE
Sbjct: 429 DWGFAKDSLRLVAEGANNLLLLTE 452
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 125/352 (35%), Gaps = 120/352 (34%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 481
MFP+ + D+FGE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEFGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 482 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 515
A GD K D +A SL D + P+K V + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAVYEKAT 739
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 572
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 573 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 623
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 624 ENGML-----------------------SLLPISTPAPPH-------------------- 640
E +L ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 641 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYAS 106
>gi|317036117|ref|XP_001397647.2| cleavage and polyadenylylation specificity factor [Aspergillus
niger CBS 513.88]
Length = 1015
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 53/264 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 189 GLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 248
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ P R++R ++ D I T+ GG VL+P D++ RVLEL
Sbjct: 249 LRKPTALVCSTRGGERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYA 308
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W + + +Y +++T+ +S LEWM ++I + FE
Sbjct: 309 LEHAWRDAAGSGQGDDVLKGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDA 368
Query: 274 -TSRDNA-------------------FLLKHVTLLINKSELDN--APDGPKLVLASMASL 311
T + N F KH+ +L K L+ + PK++LAS SL
Sbjct: 369 ATGQSNTEGQRAGQNQGKTEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSL 428
Query: 312 EAGFSHDIFVEWASDVKNLVLFTE 335
+ GF+ D A NL+L TE
Sbjct: 429 DWGFAKDSLRLVAEGANNLLLLTE 452
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 125/352 (35%), Gaps = 120/352 (34%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 481
MFP+ + D+FGE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEFGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 482 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 515
A GD K D +A SL D + P+K V + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAVYEKAT 739
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 572
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 573 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 623
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 624 ENGML-----------------------SLLPISTPAPPH-------------------- 640
E +L ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 641 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYAS 106
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 19/252 (7%)
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
I + P AGH+LG ++ I+ G ++++ DY+R +++HL ++ VLIT++
Sbjct: 173 IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLISAEAPKGIKIDVLITESTF 232
Query: 186 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 242
+ + PPR +RE +I+ L GG VL+PV + GR ELLLIL++YW+ H P
Sbjct: 233 GVSSNPPRLEREAALMKSITGVLNRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKIP 292
Query: 243 IYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVTLLIN 290
IY++ ++ + ++++ M ++I + F E S D + + + V + +
Sbjct: 293 IYYIGNIARRCMVVYQTYIGAMNENIKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSVRS 352
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
D+ G ++LAS L+ G S ++ WA +N V+ T GT+ + + +
Sbjct: 353 IERFDDV--GGCVMLASPGMLQTGTSRELLERWAPSERNGVIMTGYSVEGTMGKQILNE- 409
Query: 351 PPKAVKVTMSRR 362
P+ + MS R
Sbjct: 410 -PEQIPAVMSGR 420
>gi|302499334|ref|XP_003011663.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
gi|291175215|gb|EFE31023.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 17/240 (7%)
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
I + P AGH+LG ++ I+ G ++++ DY+R +++HL + V+ V+IT++
Sbjct: 59 IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLISAEVPKGVKIDVMITESTF 118
Query: 186 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 242
+ + PPR +RE +++ + GG VL+PV + GR ELLLIL++YW+ H P
Sbjct: 119 GISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVP 178
Query: 243 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------------FLLKHVTLLIN 290
IY++ ++ + ++++ M ++I + F A + + V L N
Sbjct: 179 IYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRN 238
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
++ G ++LAS L+ G S ++ WA + +N V+ T GT+ + + +P
Sbjct: 239 LDRFEDV--GGCVMLASPGMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 296
>gi|399216276|emb|CCF72964.1| unnamed protein product [Babesia microti strain RI]
Length = 916
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 168/380 (44%), Gaps = 42/380 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNF----LIDCGWNDHFDPSLLQPLSKVASTID 56
MG V + P + ++ + LVSI N+ L+DCG +D F+ ++ L + I
Sbjct: 1 MGMYVTIQP---ILTDSEWATLVSIKLSNYRIKLLVDCGLSDGFNCHSIKKLLMQSIGIK 57
Query: 57 AVLLSHPDTLHLGALPYAMKQ---LGLSAPVFSTEPVYRLG---LLTMYDQYLSRRSVTR 110
+ L+H H+G LP+ M++ L + T+P Y+L LL + D ++
Sbjct: 58 YIFLTHSTLEHVGGLPFLMRKYTKLRNKPQIICTDPTYKLAKANLLDLVDNMSLNLPKSK 117
Query: 111 LTYS--------QNYHLSGKGEGIVV-------APHV--AGHLLGGTVWKITKDGEDVIY 153
L YS N L E I + + HV +GH +GG+ + +T + ++
Sbjct: 118 LHYSADEINSALSNSKLLRYDEHITLDSAIDGLSLHVINSGHSVGGSAYVLTMGTKQILI 177
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITD----AYNA--LHNQPPRQQREMFQDAISKTL 207
A + + HLN L + P +LITD + NA LH+ +M TL
Sbjct: 178 ARKISLISKWHLNSLSLSTVNNPYLLITDFPKLSINACLLHSS-----LDMVIHKTINTL 232
Query: 208 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGD 266
+ G VLLP+D R++ELL E W H + +P+ + + S + +E+M
Sbjct: 233 KNGNCVLLPIDIDSRMVELLHHFEMCWKSHYVAKWPLIIASPIVSKMSLIFSTSIEYMSS 292
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+ F N + +V L +L + P ++ ++ SL GFS+ +F S
Sbjct: 293 KVKSEFSRDLKNPLIFDNVIYLDKLEQLKPFTNVPCVIFSTPGSLNWGFSNALFAAIGSK 352
Query: 327 VKNLVLFTERGQFGTLARML 346
NL++ ++ TLAR L
Sbjct: 353 KGNLIILSKEPTTKTLARKL 372
>gi|358368318|dbj|GAA84935.1| cleavage and polyadenylylation specificity factor [Aspergillus
kawachii IFO 4308]
Length = 1015
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 53/264 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W + E ++YAVD+N+ +E + G V+E
Sbjct: 189 GLTLTAYNAGHTVGGTIWHVQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 248
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ P R++R ++ D I T+ GG VL+P D++ RVLEL
Sbjct: 249 LRKPTALVCSTRGGERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYA 308
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------- 273
LE W + + +Y +++T+ +S LEWM ++I + FE
Sbjct: 309 LEHAWRDAAGSGQGDDTLKGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDA 368
Query: 274 -TSRDNA-------------------FLLKHVTLLINKSELDN--APDGPKLVLASMASL 311
T + N F KH+ +L K L+ + PK++LAS SL
Sbjct: 369 ATGQSNTEGQRAGQNQGKAEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSL 428
Query: 312 EAGFSHDIFVEWASDVKNLVLFTE 335
+ GF+ D A NL+L TE
Sbjct: 429 DWGFAKDSLRLVAEGANNLLLLTE 452
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 127/352 (36%), Gaps = 120/352 (34%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 481
MFP+ + D++GE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 482 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 515
A GD K D +A SL D + P+K + + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAIYEKAT 739
Query: 516 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 572
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 573 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 623
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 624 ENGML------------SLL-----------PISTPAPPH-------------------- 640
E +L LL ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKDEGGSTKVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 641 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYAS 106
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 159/346 (45%), Gaps = 52/346 (15%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRL---------------- 93
S +D +L+SH H +LPY M+Q VF +T+ +YR
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFKGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 122
Query: 94 -----------GLLT-----MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 137
G L +Y +S R+ + +YH + + +GI + AGH+L
Sbjct: 123 EGGGTSATGASGSLNEEGGNLYTDDDIFKSFDRIE-TIDYHSTMEIDGIKFTAYHAGHVL 181
Query: 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 197
G ++ I G V++ DY+R + +HL + RP +LIT++ + + E
Sbjct: 182 GACMYFIEIGGLKVLFTGDYSREENRHLQAAEVPP-TRPDILITESTFGTGTLESKAELE 240
Query: 198 M-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTI 254
I T+ GG VLLPV + G E+LLILE+YW ++ N +Y+ + ++ +
Sbjct: 241 KKLTSHIHATITRGGRVLLPVFALGNAQEILLILEEYWEKNEDLHNVNVYYCSDLARKCM 300
Query: 255 DYVKSFLEWMGDSI----------TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
+++ M D I + S +++ N F K++ + N S+ + GP +V
Sbjct: 301 AVYETYTGIMNDKIRLSSSSSSSTSSSNNSTKSNPFDFKYIKSIKNLSKFSDL--GPSVV 358
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+A+ L+AG S + +WA + KNLV+ T GT+A+ + +P
Sbjct: 359 VATPGMLQAGVSRQLLEKWAPEQKNLVILTGYSVEGTMAKDIMKEP 404
>gi|378756419|gb|EHY66443.1| hypothetical protein NERG_00083 [Nematocida sp. 1 ERTm2]
Length = 730
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 32/298 (10%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMY--------------- 99
I ++L D LG L + ++ LG++AP++ T P+ LG + +
Sbjct: 54 ITHIILCSSDISSLGGLIH-LESLGINAPIYGTVPIKILGRIEILERLKVLEKFHGNSSL 112
Query: 100 ----DQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
D+ R + L Y+Q L +GIVV P +G +GG +WKI K+ ++ I
Sbjct: 113 DMKQDKIFDR--IIPLKYTQTVELE---DGIVVGPLNSGSSVGGAIWKIRKNEQEWIICD 167
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 214
N RKE HL+G + + +P +I ++ + Q R+ R+ D++ K + G V
Sbjct: 168 KINHRKEAHLDGLDISNISKPLGVIVNSTQVVKEQSTRRMRDKELVDSVVKCINGNGKVF 227
Query: 215 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
+P ++LE+ + L Y + + P+ ++ + D VK+ LEW G SI F
Sbjct: 228 IPT-GYSQLLEIAMTL--YNHKETQEMPMALYSFYGNKYFDMVKTILEWTGSSILHKFNQ 284
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
++N F L ++ +E ++ ++ +GFS I A KNL+L
Sbjct: 285 EKENPFNLLNLKFY---NECPDSEISENIIFVIDKHGNSGFSPVILPHIAKSSKNLIL 339
>gi|67525249|ref|XP_660686.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|40744477|gb|EAA63653.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|259485970|tpe|CBF83440.1| TPA: cleavage and polyadenylylation specificity factor, putative
(AFU_orthologue; AFUA_3G09720) [Aspergillus nidulans
FGSC A4]
Length = 1005
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 52/262 (19%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 247
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P LI P R++R E+ D I TL GG VL+P D++ RVLEL
Sbjct: 248 LRKPTALICSTRGGDKFALPGGRKKRDEILLDMIRSTLVKGGTVLIPTDTSARVLELAYA 307
Query: 230 LEDYWAEHSLNYP--------IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR----- 276
LE W + + + +Y ++T+ +S LEWM +SI + FE +
Sbjct: 308 LEHAWRDAARDTQDDVLKRGGLYLAGRKVNTTMRLARSMLEWMDESIVREFEAAEAADTA 367
Query: 277 ----------------DNA----FLLKHVTLLINKSELD---NAPDGPKLVLASMASLEA 313
DN F KH+ + K +L+ N P PK++LAS +SL+
Sbjct: 368 GQNNDGQRSDQRQGKTDNKGLGPFTFKHLKTVERKKKLEQLLNDPT-PKVILASDSSLDW 426
Query: 314 GFSHDIFVEWASDVKNLVLFTE 335
GF+ + A NL+L T+
Sbjct: 427 GFAKESLRLLAGGENNLLLLTD 448
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 135/364 (37%), Gaps = 123/364 (33%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ-----------------------A 482
MFP+ + D++GE+I P++Y+ +E DM Q A
Sbjct: 616 MFPYVAPRKKGDEYGEIIRPEEYLRAEEREEIDMQQRRTESQLKLGQKRRWDETQSAGGA 675
Query: 483 AMHIGGDDGK------LDEGSASLILD----------------AKPSKVVSNELTVQVKC 520
A G D + LD S + I D P+K + + T+ +
Sbjct: 676 ARKQGVDSTERKDTDMLDNLSMTDIGDDTDTAAAPGEEDDQAFEGPAKAIYEKATLTINA 735
Query: 521 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK------------H 568
L F+D+ G D RS++ ++ + P KL+LV G E T L C K
Sbjct: 736 RLAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETMALATECQKLLGVKTGADAPSP 795
Query: 569 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK------------KLGDYEIAWV 616
++TP E ID + D A+ V+LS L+ + ++ +L E
Sbjct: 796 TAAVIFTPTNGEIIDASVDTSAWTVKLSNNLVRRLKWQHVRTLGVVTLTGQLKAPEPVST 855
Query: 617 DAEVGKTENGMLSLL-PISTPA-----------------------------PPH------ 640
D + + N L+ STP PP+
Sbjct: 856 DEDAINSPNKKQKLVEETSTPEQPTPTFQPQPTEPQQTTDKPDRYPVLDILPPNMASGTR 915
Query: 641 ---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQ 696
+ + VGDL++ADL+ + + G + EF G G L +V +RK SGT +
Sbjct: 916 SMTRPLHVGDLRLADLRKIMQNAGHKAEFRGEGTLLIDGFVAVRK----------SGTGK 965
Query: 697 IVIE 700
I IE
Sbjct: 966 IEIE 969
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP L L K ST+ +LL+H H+GA + K L PV
Sbjct: 27 GVKILVDVGWDDTFDPLDLVELEKHVSTLSLILLTHATPSHIGAYVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDVYES 106
>gi|449329090|gb|AGE95364.1| cleavage and polyadenylation specificity factor 100kDa subunit
[Encephalitozoon cuniculi]
Length = 639
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 31/301 (10%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +GV+ +++ ID L++CG D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIKTETGVY-----CHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL------------SRRSV 108
+ + +G LPY ++ VFS+ P+ LG + + D++L +
Sbjct: 61 TSFNINCIGGLPYVLRN-NYYNKVFSSVPIKVLGKICL-DEHLRGMGLESSVDTGCFERI 118
Query: 109 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
+ + YSQ ++ + + + +G+ +GG ++KI+K E +I + N RKE HL+G
Sbjct: 119 SEIKYSQPTAVNN----VEICAYNSGNSIGGCLYKISKGPERIIVGFNVNHRKENHLDGM 174
Query: 169 VLESFVRPAVLITDAYNAL-HNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
++ + + + L N ++ ++F+D + L +G V+LPV + R LE+
Sbjct: 175 SFSGIGDCSLCVFNGNHVLAENISIAKRDDVFRDMVGGALDSGRKVVLPVKYS-RFLEVA 233
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
LIL A+ N I L+Y ++ KS +EW G+ ++ F + N F + +
Sbjct: 234 LILNGLMAQR--NGKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKVNPFEFERIEF 291
Query: 288 L 288
+
Sbjct: 292 M 292
>gi|19173576|ref|NP_597379.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|19170782|emb|CAD26556.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 639
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 31/301 (10%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +GV+ +++ ID L++CG D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIKTETGVY-----CHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL------------SRRSV 108
+ + +G LPY ++ VFS+ P+ LG + + D++L +
Sbjct: 61 TSFNINCIGGLPYVLRN-NYYNKVFSSVPIKVLGKICL-DEHLRGMGLESSVDTGCFERI 118
Query: 109 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168
+ + YSQ ++ + + + +G+ +GG ++KI+K E +I + N RKE HL+G
Sbjct: 119 SEIKYSQPTAVNN----VEICAYNSGNSIGGCLYKISKGPERIIVGFNVNHRKENHLDGM 174
Query: 169 VLESFVRPAVLITDAYNAL-HNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
++ + + + L N ++ ++F+D + L +G V+LPV + R LE+
Sbjct: 175 SFSGIGDCSLCVFNGNHVLAENISIAKRDDVFRDMVGGALDSGRKVVLPVKYS-RFLEVA 233
Query: 228 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 287
LIL A+ N I L+Y ++ KS +EW G+ ++ F + N F + +
Sbjct: 234 LILNGLMAQR--NGKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKVNPFEFERIEF 291
Query: 288 L 288
+
Sbjct: 292 M 292
>gi|84995678|ref|XP_952561.1| hypothetical protein [Theileria annulata]
gi|65302722|emb|CAI74829.1| hypothetical protein TA11620 [Theileria annulata]
Length = 830
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 171/391 (43%), Gaps = 39/391 (9%)
Query: 26 DGF-NFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-----G 79
D F N L++CGW+ F L K A +D +L++ D LH GAL + + G
Sbjct: 33 DNFLNVLLNCGWSLDFSEEKLNLYKKYAQNVDVILITDGDFLHSGALLWLTSRFLTELKG 92
Query: 80 LSAP-VFSTEPVYR------------------LGLLTMYDQYLSRRSVTRLTYSQNYHLS 120
S P + TE Y+ G +M D L + +L YS+ Y
Sbjct: 93 KSIPKILCTEGTYKFMRASLIDVLENVTFSTDFGYYSMDDLELLDSNCVKLRYSETYCHM 152
Query: 121 GKGEGIVVAPHVA----GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 176
K + + V G+ +GG +WKI+ VI LNG + + P
Sbjct: 153 KKLQNLDVKSSFCALNNGYSVGGAIWKISVGYNTVICGDKIRIYTGTLLNGANINDILNP 212
Query: 177 AVLI---TDAYNALHNQPPR-----QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228
+L+ D H P+ + D + TL GGN+L P+D +L LL+
Sbjct: 213 DLLVLSHEDVETPKHVTDPKGVKVCEDLNSLTDKLFTTLTKGGNILFPMDVDYTLLNLLI 272
Query: 229 ILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL-LKHVT 286
L W+ L+ + I + ++ + ++ + LE+M SI +F + N F+ L H+
Sbjct: 273 HLNMIWSTSQLSQFKIVLASPIADKLMLFIGTCLEYMKTSIFHNFIKTLWNPFMDLNHIE 332
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
++ + +L P + +++ ++++ GFS+ +F+ +S KNLV+ T+ Q T
Sbjct: 333 IITSLGQLSRYRFRPTVFISTTSNMDFGFSNFLFLAISSYYKNLVVLTKPNQSVTKYVYN 392
Query: 347 QADPPPKAVKVTMSRRVPLVGEELIAYEEEQ 377
+ + +A + +R + ++ +E E E+
Sbjct: 393 RNNSGVQAPQYKETRLINVLDDEPEEQENEK 423
>gi|387594701|gb|EIJ89725.1| hypothetical protein NEQG_00495 [Nematocida parisii ERTm3]
gi|387596451|gb|EIJ94072.1| hypothetical protein NEPG_00738 [Nematocida parisii ERTm1]
Length = 744
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 29/329 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81
+V ID L++ G + L + S I ++L D LG L + ++ LG+
Sbjct: 22 IVEIDNLRILVNFGTEYDLSLDIYSDLEYLKS-ITHIILCSSDISSLGGLIH-LESLGID 79
Query: 82 APVFSTEPVYRLGLLTMYD--QYLSR---------------RSVTRLTYSQNYHLSGKGE 124
P++ T P+ LG + + + + L + + L Y+Q LS +
Sbjct: 80 VPIYGTVPIKILGRIEILERIKVLEKFHSIGSSEAKQDKVFDKIIPLKYTQTVELS---D 136
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184
GI V P +G +GG+VWKI K+ ++ + N RKE HL+G + +P ++ ++
Sbjct: 137 GIFVGPLNSGSSVGGSVWKIRKNEQEWLICDKVNHRKEAHLDGLDTSNISKPLGIVVNST 196
Query: 185 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 243
+ + Q R+ R+ D I K + G V +P ++LE+++ L ++ L +
Sbjct: 197 HVIKEQNTRRMRDKELVDCIVKCINNKGKVFIPT-GYSQLLEIVMTLYNHKDTQELTMAL 255
Query: 244 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 303
Y ++ S D VK+ LEW G SI + F ++N F L ++ N+ P+
Sbjct: 256 Y--SFYGSKYFDMVKTILEWTGSSILQKFNQEKENPFNLLNLKFY-NECADCEIPEDIIF 312
Query: 304 VLASMASLEAGFSHDIFVEWASDVKNLVL 332
V+ + +GFS I A + +NL+L
Sbjct: 313 VIDRHGN--SGFSPVILPGIAKNPQNLIL 339
>gi|295659367|ref|XP_002790242.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226281947|gb|EEH37513.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 999
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 62/273 (22%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGASWFGGSGGSGTEVVEQ 247
Query: 173 FVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ T + L R++R ++ D + GG VL+P+D++ RVLEL +
Sbjct: 248 LRKPTALVCSTRGGDKLVLSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYV 307
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR---- 276
LE W E + +Y + T+ +S LEWM + I + FE
Sbjct: 308 LEHAWRESAETADGEDPLKGVGLYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHGRDP 367
Query: 277 --------------------------DNA------FLLKHVTLLINKSELDN--APDGPK 302
DNA F +H+ ++ K++LD + P+
Sbjct: 368 VTGGGKGRSDGPSQRNAPASIPDKKGDNASKGLGPFTFRHLKIVERKTKLDKILGSNAPQ 427
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
++L S SLE G+S + + A+ +NL++ TE
Sbjct: 428 VILTSDTSLEWGYSKHVLQKIAAGSENLIILTE 460
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 132/344 (38%), Gaps = 102/344 (29%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------- 494
MFP+ D++GE I P++Y+ +E + G DG++
Sbjct: 630 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEAEMQTQRGPDGRIQTRLGPKRRWGELNAN 689
Query: 495 -------------EGSASLILDAK------PSKVVSNELTVQVKCLLIFIDYEGRADGRS 535
E ++S D + PSKV+ T+++ + F+D+ G D RS
Sbjct: 690 DLALAGGLGINGTENASSSEEDTEEQPVEGPSKVIFVHSTLELNARIAFVDFAGLHDKRS 749
Query: 536 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--------------VYTPQIEET 581
++ ++ + P KL+L G + T L C + ++TP ET
Sbjct: 750 LEMLIPLIQPRKLILTAGLKDETMALAAECRNLLTAKAGIELGLSSESVVDIFTPAPGET 809
Query: 582 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------GKTENG--------- 626
+D + D A+ V+LS+ L+ + ++ + + + E+ ENG
Sbjct: 810 VDASVDTNAWMVKLSKGLVKLLKWQNVRSLGVVALMGELRGPEPASDDENGPEMSQKKQK 869
Query: 627 -------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLS 658
+L +LP + A + + VGDL++ADL+ +
Sbjct: 870 MLLENSPGTGENKQNPLTPKKDSFPLLDVLPANMAAATRSVTRPLHVGDLRLADLRKLMQ 929
Query: 659 SKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
S G EF G G L +V +RK SG +I IEG
Sbjct: 930 SSGHTAEFRGEGTLLIDGFVAVRK----------SGIGKIEIEG 963
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW+ FD S L L + T+ +LL+H
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDHSFDTSALAELERQIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS 104
H+GA + K L PV++T PV G + D Y S
Sbjct: 65 PSHIGAFAHCCKTFPLFTQIPVYATSPVIAFGRSLLQDLYAS 106
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 36/288 (12%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D +L+SH H GALP+ + +
Sbjct: 37 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLLISHFHLDHSGALPWFLTKTS 96
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
VF +T+ +YR L++ Y + +S S ++ Y++ N+H
Sbjct: 97 FKGRVFMTHATKAIYRW-LVSDYIK-VSNISTEQMLYTESDLEGSMDRIETINFHEEKDV 154
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
G+ + AGH+LG ++ I G V+Y D++R++++HL + + V P VLIT
Sbjct: 155 RGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPT-VHPDVLITK- 212
Query: 184 YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
R++RE F +S + GG L+PV + GR ELLLIL++YW+ H +
Sbjct: 213 ---------REERESRFTTLVSDVVGRGGRCLIPVFALGRAQELLLILDEYWSLHPELQD 263
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 288
PIY+ + ++ + ++++ M D I + + + +N F+ +H++ L
Sbjct: 264 IPIYYASSLAKKCMAVYQTYVNAMNDRIRR--QIAVNNPFVFRHISNL 309
>gi|401423165|ref|XP_003876069.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322492310|emb|CBZ27584.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 822
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 162/706 (22%), Positives = 278/706 (39%), Gaps = 103/706 (14%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q T + N P +YLV IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTSVYECTTPNAPYAYLVEIDGVRILFDCGWNDEFDTSFLDKLKPYLPTVHAVILSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG----LLTMYDQYLSRRSVT-------RL 111
P GALP+ + + V + ++G L + QY + + T +
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKIGVHSVLHSFLYQYPNSHTFTLADGESFTM 127
Query: 112 TYSQNYH------------LSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDY 157
T YH ++ K + + V AG +LGG W + +++ Y D+
Sbjct: 128 TVDSIYHSFRSLREPYGGKVTVKNDDVEVNCFAVFAGRMLGGYSWTVKYQIDELFYCPDF 187
Query: 158 NRRKEKHL---------NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 208
+ + L N + SF P + A + + Q + +F++ TLR
Sbjct: 188 SVKPSYALKPFDVPTTANIVLASSF--PFHMTGANRTAKYEE---QLKSLFKE-FQHTLR 241
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDS 267
G +VL+PV+ AGR LE+L I+ AE + Y + + + +D + E + D
Sbjct: 242 GGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQDY 301
Query: 268 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVEWA 324
+ D+ L +V L +E GPK+ + ASL+ G S ++ FV+
Sbjct: 302 LIL------DDKRLFANV-LTCRSAEEALTIQGPKICVTDGASLDFGPSAELLEYFVKGN 354
Query: 325 SD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EELIAYEEEQ 377
D +L++ TE GT A ++ A + + + ++RR L G + +E EQ
Sbjct: 355 RDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIELEHEMEQ 414
Query: 378 TRLKKEEALKASLVK-EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG------ 430
R + E +V+ ++E+ A+ +N+ D A + + + G
Sbjct: 415 RRRELEAQSAFQIVQDDDEAAAAKREENDDDDDEWATTATGHGGATEKAAAYAGTKDADA 474
Query: 431 ---------RYRDILIDGFVPPST---SVAPMFPFYENNSEWD---------DFGEVINP 469
+ +PP S FP E S +G ++
Sbjct: 475 GGAARAASKAKTATTLGLVLPPPLHYHSKHLSFPVLETTSTLSAAALKRVDVTYGLPVSE 534
Query: 470 DDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEG 529
++ ++ + G + E A + + PSKV + V +C ++ D G
Sbjct: 535 EEQVVLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAVQVTRRCRVVLSDLSG 593
Query: 530 RADGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHC-----LKHVCPHVYTPQIEETI 582
D ++K++L KLV + GSAE C +K T +
Sbjct: 594 YPDALTMKSVLKTKWTFAKKLVGLRGSAEDGRAFLHFCRADKAMKCGSNVFSTTSSGAPL 653
Query: 583 DVTSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAEV 620
++ + + +Y VQL L ++ K +E+ WV+ E+
Sbjct: 654 ELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGEL 699
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 42/376 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD----PSLLQPLSKVASTIDAVLL 60
+++T L G S+L+S LIDCG N + P L P S+IDAV+L
Sbjct: 181 IRITTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPLSSIDAVVL 240
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVY---------------RLGLLTMYDQYLSR 105
+H H G +P K G PV+ T P R G YD + R
Sbjct: 241 THAHLDHSGMIPLLFK-YGYDGPVYMTPPTRDLMALLQLDYIEVANREGKRPPYDSAMIR 299
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHV------AGHLLGGTV--WKITKDGEDVIYAVDY 157
++ + T + NY G+ +AP + +GH+LG + + I + +V ++ D+
Sbjct: 300 ETL-KHTITLNY-----GDVTDIAPDIRLTFYNSGHILGSAIAHFHIGEGLYNVAFSGDF 353
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDA-YNALHN-QPPRQQREM-FQDAISKTLRAGGNVL 214
K + + V F R ++ +A Y +H+ QP R++ EM Q+ I KTL+ GG VL
Sbjct: 354 KYEKTRLFDPAV-NQFPRIETMVMEATYGGMHDIQPSRREAEMEIQNIIKKTLQRGGKVL 412
Query: 215 LPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+P + GR E++++LE+ + ++ P+Y + +T + ++ E++ +
Sbjct: 413 IPTFAVGRSQEVMIVLEEAIRKGFIDKVPVYLDGMIWEATAIHT-TYPEYLNVELQDMIF 471
Query: 274 TSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
N FL + K E A P +VLA+ + G + F ++ +D KN +
Sbjct: 472 HKGQNPFLSPAFVQVDSPQKREAILADPSPCIVLATSGMMNGGPVMEYFKQYGADKKNTL 531
Query: 332 LFTERGQFGTLARMLQ 347
+F GT+ R +Q
Sbjct: 532 IFVGYQAEGTMGRRIQ 547
>gi|391871950|gb|EIT81099.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Aspergillus oryzae 3.042]
Length = 1010
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 119/265 (44%), Gaps = 54/265 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 193 GLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQ 252
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ P R++R+ + D I TL GG VL+P D++ RVLEL
Sbjct: 253 LRKPTALVCSTRGGDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYA 312
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET------ 274
LE W + + +Y +++T+ +S LEWM ++I + FE
Sbjct: 313 LEHAWRDAAGTGQEDNVLKEAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDA 372
Query: 275 ----SRDNA------------------FLLKHVTLLINKSELDNAPD--GPKLVLASMAS 310
SR N F KH+ ++ K +L+ + PK++LAS S
Sbjct: 373 ATGQSRANPGGQRSGQNQGKEEKGTGPFTFKHLKIVERKKKLEKILNNQAPKVILASDTS 432
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTE 335
L+ GF+ + A NL+L TE
Sbjct: 433 LDWGFAKESLRLVAGGPNNLLLLTE 457
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 135/363 (37%), Gaps = 122/363 (33%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ----AAMHIGGDD----------- 490
MFP+ + D++GE I P++Y+ +E DM Q + +G
Sbjct: 625 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRSDSQTKLGQKRRWDETGPAGRR 684
Query: 491 ------------GKLDEGSA---SLILDAK-------------------PSKVVSNELTV 516
GK D +A SL D + P+K V + ++
Sbjct: 685 LSSSGAKRQQFPGKKDASTADDMSLTEDGEGADAALESEDEADSQTFEGPAKAVYQKASL 744
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---- 572
+ + F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 745 TINARIAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAGVD 804
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 620
+YTP I E ID + D A+ V+LS L+ + ++ + + + A++
Sbjct: 805 VSAADSAVIYTPVIGEVIDASVDTNAWMVKLSNSLVRRLKWQHVRSLVVVTLTAQLRGPE 864
Query: 621 ---------------------------GKTENG------------MLSLLPISTPAPPH- 640
T +G +L +LP + A
Sbjct: 865 LNPPEDAADSPSKKQKLLQEETSSPATAPTVDGTKPTADKSDVYPVLDILPANMAAGTRS 924
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
+ + VGDL++ADL+ + G EF G G L V +RK SGT +I
Sbjct: 925 MTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDRMVAVRK----------SGTGKI 974
Query: 698 VIE 700
IE
Sbjct: 975 EIE 977
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYAS 106
>gi|225679068|gb|EEH17352.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 984
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 62/273 (22%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 148 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEVVEQ 207
Query: 173 FVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ T + L R++R ++ D + GG VL+P+D++ RVLEL +
Sbjct: 208 LRKPTALVCSTRGGDKLALSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYV 267
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR---- 276
LE W E + +Y + T+ +S LEWM + I + FE
Sbjct: 268 LEHAWRESAETADGEDPLKGAGLYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHGRDP 327
Query: 277 --------------------------DNA------FLLKHVTLLINKSELDN--APDGPK 302
DNA F +H+ ++ K++LD + P+
Sbjct: 328 VTGGGKGRSDGPSQRNAPASVPDKKSDNASKGLGPFTFRHLKIVERKTKLDKILGSNAPQ 387
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
++L SLE G+S + + A+ +NL++ TE
Sbjct: 388 VILTPDTSLEWGYSKHVLQKIAAGSENLIILTE 420
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 68/254 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PS+V T+++ + F+D+ G D RS++ ++ + P KL+L G + T L C
Sbjct: 705 PSRVTFVHSTLELNARIAFVDFAGLHDKRSLEMLIPLIQPRKLILTAGLKDETMALAAEC 764
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ ++TP ET+D + D A+ V+LS+ L+ + ++ +
Sbjct: 765 RNLLTAKAGIELGLSSESAVDIFTPAPGETVDASVDTNAWMVKLSKDLVKLLKWQNVRSL 824
Query: 612 EIAWVDAEV------GKTENG----------------------------------MLSLL 631
+ + E+ ENG +L +L
Sbjct: 825 GVVALMGELRGPEPASDDENGPEMSQKKQKMLLENSPGTGENKQNPLTPKKDSFPLLDVL 884
Query: 632 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
P + A + + VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PANMAAATRSVTRPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 688 KGGGSGTQQIVIEG 701
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|169767492|ref|XP_001818217.1| cleavage and polyadenylylation specificity factor [Aspergillus
oryzae RIB40]
gi|83766072|dbj|BAE56215.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1014
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 119/265 (44%), Gaps = 54/265 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 197 GLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQ 256
Query: 173 FVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ P R++R+ + D I TL GG VL+P D++ RVLEL
Sbjct: 257 LRKPTALVCSTRGGDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYA 316
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET------ 274
LE W + + +Y +++T+ +S LEWM ++I + FE
Sbjct: 317 LEHAWRDAAGTGQEDNVLKEAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDA 376
Query: 275 ----SRDNA------------------FLLKHVTLLINKSELDNAPD--GPKLVLASMAS 310
SR N F KH+ ++ K +L+ + PK++LAS S
Sbjct: 377 ATGQSRANPGGQRSGQNQGKEEKGTGPFTFKHLKIVERKKKLEKILNNQAPKVILASDTS 436
Query: 311 LEAGFSHDIFVEWASDVKNLVLFTE 335
L+ GF+ + A NL+L TE
Sbjct: 437 LDWGFAKESLRLVAGGPNNLLLLTE 461
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 135/363 (37%), Gaps = 122/363 (33%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ----AAMHIGGDD----------- 490
MFP+ + D++GE I P++Y+ +E DM Q + +G
Sbjct: 629 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRSDSQTKLGQKRRWDETGPAGRR 688
Query: 491 ------------GKLDEGSA---SLILDAK-------------------PSKVVSNELTV 516
GK D +A SL D + P+K V + ++
Sbjct: 689 LSSSGAKRQQFPGKKDASTADDMSLTEDGEGADAALESEDEADSQTFEGPAKAVYQKASL 748
Query: 517 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---- 572
+ + F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 749 TINARIAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAGVD 808
Query: 573 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 620
+YTP I E ID + D A+ V+LS L+ + ++ + + + A++
Sbjct: 809 VSAADSAVIYTPVIGEVIDASVDTNAWMVKLSNSLVRRLKWQHVRSLGVVTLTAQLRGPE 868
Query: 621 ---------------------------GKTENG------------MLSLLPISTPAPPH- 640
T +G +L +LP + A
Sbjct: 869 LNPPEDAADSPSKKQKLLQEETSSPATAPTVDGTKPTADKSDVYPVLDILPANMAAGTRS 928
Query: 641 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 697
+ + VGDL++ADL+ + G EF G G L V +RK SGT +I
Sbjct: 929 MTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDRMVAVRK----------SGTGKI 978
Query: 698 VIE 700
IE
Sbjct: 979 EIE 981
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYAS 106
>gi|430813249|emb|CCJ29377.1| unnamed protein product [Pneumocystis jirovecii]
Length = 574
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
+YH + + G+ P+ AGH+LG ++ I G +++ DY+R +++HL + ++
Sbjct: 31 DYHSTIEVNGVKFTPYHAGHVLGAAMFFIEVAGIKILFTGDYSREEDRHLIPAEVPP-IQ 89
Query: 176 PAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
P +LIT++ Y +QP ++ I +R GG VL+PV + GR EL+LI+++YW
Sbjct: 90 PDILITESTYGTASHQPISEKESRLTSIIHSIIRRGGRVLIPVFALGRTQELMLIIDEYW 149
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
H + P+Y+ ++ + + TK FE N F+ ++++ L
Sbjct: 150 HNHPELHSIPVYYACSLAKKCMTVYQ----------TKIFE--ERNPFIFRYISSL---K 194
Query: 293 ELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
LD D GP ++LAS L++G S + +W D KN ++ GT+A+ + +P
Sbjct: 195 SLDRFEDIGPCVMLASPGMLQSGVSRALLEKWCPDPKNGLIVAGYCVEGTMAKHILNEP 253
>gi|226288011|gb|EEH43524.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 999
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 62/273 (22%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEVVEQ 247
Query: 173 FVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P L+ T + L R++R ++ D + GG VL+P+D++ RVLEL +
Sbjct: 248 LRKPTALVCSTRGGDKLALSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYV 307
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR---- 276
LE W E + +Y + T+ +S LEWM + I + FE
Sbjct: 308 LEHAWRESAETADGEDPLKGAGLYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHGRDP 367
Query: 277 --------------------------DNA------FLLKHVTLLINKSELDN--APDGPK 302
DNA F +H+ ++ K++LD + P+
Sbjct: 368 VTGGGKGRSDGPSQRNAPASVPDKKSDNASKGLGPFTFRHLKIVERKTKLDKILGSNAPQ 427
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
++L SLE G+S + + A+ +NL++ TE
Sbjct: 428 VILTPDTSLEWGYSKHVLQKIAAGSENLIILTE 460
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 132/344 (38%), Gaps = 102/344 (29%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------- 494
MFP+ D++GE I P++Y+ +E + G DG++
Sbjct: 630 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEAEMQTQRGPDGRIQTRLGPKRRWGELNAN 689
Query: 495 -------------EGSASLILDAK------PSKVVSNELTVQVKCLLIFIDYEGRADGRS 535
E ++S D + PS+V T+++ + F+D+ G D RS
Sbjct: 690 DMALAGGLVINGTENASSSEEDTEEQPVEGPSRVTFVHSTLELNARIAFVDFAGLHDKRS 749
Query: 536 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--------------VYTPQIEET 581
++ ++ + P KL+L G + T L C + ++TP ET
Sbjct: 750 LEMLIPLIQPRKLILTAGLKDETMALVAECRNLLTAKAGIELGLSSESVVDIFTPAPGET 809
Query: 582 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------GKTENG--------- 626
+D + D A+ V+LS+ L+ + ++ + + + E+ ENG
Sbjct: 810 VDASVDTNAWMVKLSKDLVKLLKWQNVRSLGVVALMGELRGPEPASDDENGPEMSQKKQK 869
Query: 627 -------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLS 658
+L +LP + A + + VGDL++ADL+ +
Sbjct: 870 MLLENSPGTGENKQNPLTPKKDSFPLLDVLPANMAAATRSVTRPLHVGDLRLADLRKLMQ 929
Query: 659 SKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
S G EF G G L +V +RK SGT +I IEG
Sbjct: 930 SSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEIEG 963
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW+ FD S L L + T+ +LL+H
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDHSFDTSALAELERQIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS 104
H+GA + K L PV++T PV G + D Y S
Sbjct: 65 PSHIGAFAHCCKTFPLFTQIPVYATSPVIAFGRSLLQDLYAS 106
>gi|239610975|gb|EEQ87962.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ER-3]
Length = 983
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 165/418 (39%), Gaps = 93/418 (22%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH-- 62
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLLQELY 64
Query: 63 -PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------------QYL 103
L LP A LS P + R T D +Y
Sbjct: 65 ASAPLAATFLPKATSG-DLSPPSPVPKRATRSADTTNVDHDEPPGILLPPPTSEEIARYF 123
Query: 104 SRRSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
S + L YSQ + G+ + + AGH +GGT+W I E +IYAVD+N
Sbjct: 124 SL--IHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWN 181
Query: 159 RRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAI 203
+ +E + G V+E +P + T + L R++R ++ D I
Sbjct: 182 QARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLGGRKRRDDLLLDMI 241
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTI 254
+ GG VL+P D++ RVLEL +LE W E + + +Y + T+
Sbjct: 242 RSSFSKGGTVLIPTDTSARVLELAYVLEHAWRESAETADGADPLKSGALYLAGKKAHGTM 301
Query: 255 DYVKSFLEWMGDSITKSFETSR-----------------------------DNA------ 279
+S LEWM + I + FE D A
Sbjct: 302 RLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMPDKRGDGAFKALGP 361
Query: 280 FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
F K++ ++ K++LD + PK++L S SL+ G+S + A+ +NLV+ TE
Sbjct: 362 FTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIATGSENLVILTE 419
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 566 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 603
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 604 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 644
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 645 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 688 KGGGSGTQQIVIEG 701
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|327351648|gb|EGE80505.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ATCC 18188]
Length = 983
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 165/418 (39%), Gaps = 93/418 (22%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH-- 62
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLLQELY 64
Query: 63 -PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------------QYL 103
L LP A LS P + R T D +Y
Sbjct: 65 ASAPLAATFLPKATSG-DLSPPSPVPKRATRSADTTNVDHDDPPGILLPPPTSEEIARYF 123
Query: 104 SRRSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
S + L YSQ + G+ + + AGH +GGT+W I E +IYAVD+N
Sbjct: 124 SL--IHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWN 181
Query: 159 RRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAI 203
+ +E + G V+E +P + T + L R++R ++ D I
Sbjct: 182 QARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLGGRKRRDDLLLDMI 241
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTI 254
+ GG VL+P D++ RVLEL +LE W E + + +Y + T+
Sbjct: 242 RSSFSKGGTVLIPTDTSARVLELAYVLEHAWRESAETADGADPLKSGALYLAGKKAHGTM 301
Query: 255 DYVKSFLEWMGDSITKSFETSR-----------------------------DNA------ 279
+S LEWM + I + FE D A
Sbjct: 302 RLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMPDKRGDGAFKALGP 361
Query: 280 FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
F K++ ++ K++LD + PK++L S SL+ G+S + A+ +NLV+ TE
Sbjct: 362 FTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIATGSENLVILTE 419
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 566 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 603
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 604 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 644
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 645 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 688 KGGGSGTQQIVIEG 701
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|237842097|ref|XP_002370346.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
gi|211968010|gb|EEB03206.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
Length = 1089
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ P AGH+LG ++++ V+Y D+N ++HL L +RP VLI++ A
Sbjct: 295 LTPFYAGHVLGAAMFELKLGKASVVYTGDFNTIPDRHLGSAALPC-LRPDVLISECTYAS 353
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+P ++ E F + TL GG VL+PV + GR EL ++LE+YW L +PIYF
Sbjct: 354 FVRPSKRTVERDFCAVVHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIYFA 413
Query: 247 TYVSSSTIDYVKSFLEW--MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
++ Y + ++ W ++ E + AF H+ L +S L +AP P ++
Sbjct: 414 GGMTERANAYYRLYVHWSKADANVDADPEDALRTAFSFPHI--LPFQSSLLSAPT-PLVL 470
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 364
LA+ L G + W D LVL GT+ ML + R++P
Sbjct: 471 LATPGMLHGGLALKALKAWGGDPATLVLLPGYCVRGTVGAML----------IAGQRQIP 520
Query: 365 LVGEELI 371
L G +
Sbjct: 521 LDGHATL 527
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
T+ VKC + ++ + AD I+ ++ + P ++LVHG E L + VY
Sbjct: 526 TLNVKCRIRYMSFSAHADTTGIQQLIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVY 585
Query: 575 TPQIEETIDV 584
TP +TI +
Sbjct: 586 TPATGQTISI 595
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ P AGH+LG ++++ V+Y D+N ++HL L +RP VLI++ A
Sbjct: 303 LTPFYAGHVLGAAMFELKLGKASVVYTGDFNTIPDRHLGSAALPC-LRPDVLISECTYAS 361
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+P ++ E F + TL GG VL+PV + GR EL ++LE+YW L +PIYF
Sbjct: 362 FVRPSKRTVERDFCAVVHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIYFA 421
Query: 247 TYVSSSTIDYVKSFLEW--MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
++ Y + ++ W ++ E + AF H+ L +S L +AP P ++
Sbjct: 422 GGMTERANAYYRLYVHWSKADANVDADPEDALRTAFSFPHI--LPFQSSLLSAPT-PLVL 478
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 364
LA+ L G + W D LVL GT+ ML + R++P
Sbjct: 479 LATPGMLHGGLALKALKAWGGDPATLVLLPGYCVRGTVGAML----------IAGQRQIP 528
Query: 365 LVGEELI 371
L G +
Sbjct: 529 LDGHATL 535
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
T+ VKC + ++ + AD I+ ++ + P ++LVHG E L + VY
Sbjct: 534 TLNVKCRIRYMSFSAHADTTGIQQLIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVY 593
Query: 575 TPQIEETIDVTSD 587
TP +TI + D
Sbjct: 594 TPATGQTISIPVD 606
>gi|221502797|gb|EEE28511.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 1072
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 17/249 (6%)
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
+ + P AGH+LG ++++ V+Y D+N ++HL L +RP VLI++
Sbjct: 293 LQLTPFYAGHVLGAAMFELKLGKASVVYTGDFNTIPDRHLGSAALPC-LRPDVLISECTY 351
Query: 186 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY 244
A +P ++ E F + TL GG VL+PV + GR EL ++LE+YW L +PIY
Sbjct: 352 ASFVRPSKRTVERDFCAVVHDTLTKGGKVLIPVFAVGRAQELCMLLENYWERMHLRFPIY 411
Query: 245 FLTYVSSSTIDYVKSFLEW--MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 302
F ++ Y + ++ W ++ E + AF H+ L +S L +AP P
Sbjct: 412 FAGGMTERANAYYRLYVHWSKADANVDADPEDALRTAFSFPHI--LPFQSSLLSAPT-PL 468
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
++LA+ L G + W D LVL GT+ ML + R+
Sbjct: 469 VLLATPGMLHGGLALKALKAWGGDPATLVLLPGYCVRGTVGAML----------IAGQRQ 518
Query: 363 VPLVGEELI 371
+PL G +
Sbjct: 519 IPLDGHATL 527
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 574
T+ VKC + ++ + AD I+ ++ + P ++LVHG E L + VY
Sbjct: 526 TLNVKCRIRYMSFSAHADTTGIQQLIVNTQPRNVILVHGEKEGMAKLAAVIRRDFNIPVY 585
Query: 575 TPQIEETIDV 584
TP +TI +
Sbjct: 586 TPATGQTISI 595
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Query: 116 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175
++H +GI ++ + AGH+LG ++ + DG ++Y DY+ ++HL + + +
Sbjct: 171 DFHEERSFDGIKISCYRAGHVLGACMFLVEMDGVRILYTGDYSTEYDRHLPSAEIPN-IN 229
Query: 176 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
+LI+++ + R QRE F + L G LLPV + GR E+LLILE+YW
Sbjct: 230 VHLLISESTYGIRIHEERTQREARFLHVVLDILMRDGKCLLPVFALGRAQEILLILEEYW 289
Query: 235 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 292
A + + PI++++ ++S ++ ++F+ G+ + +S N F K V +
Sbjct: 290 AANKQLQSIPIFYISPLASKSLRVYETFIGLCGEYVKESVYNGH-NPFNFKFVKYAKSVE 348
Query: 293 ELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
+ DGP +V+ S L+ G S ++F +A D +N V+ T GTLA L+ DP
Sbjct: 349 SIRTYLLRDGPCVVMTSPGMLQGGPSLEVFEIFAPDNRNGVILTGYTVKGTLADALKKDP 408
>gi|240280758|gb|EER44262.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus H143]
Length = 1010
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 142/355 (40%), Gaps = 74/355 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQ 247
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P + P R++R ++ D I GG VL+P D++ R LEL +
Sbjct: 248 LRKPTAFVCSTRGGDKFSLPGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYV 307
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--- 277
LE W E + + +Y T+ +S LEWM + I + FE
Sbjct: 308 LEHAWRESAETADGEDPLKSGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGGDP 367
Query: 278 ---------------------------------NAFLLKHVTLLINKSELDN--APDGPK 302
F KH+ ++ K++L+ + PK
Sbjct: 368 VAAGGKGRQDGPNQRTPSAAMTDKRGDSSFKNLGPFTFKHLKIVERKAKLEKILGSNTPK 427
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
++L S SL+ G+S + + AS +NLV+ TE F P K + + R
Sbjct: 428 VILTSDTSLDWGYSKHVLQKIASGSENLVILTE--SFSV--------SPNKQMVDGIRSR 477
Query: 363 VPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 417
L E YEE + + E + L+++ S L ++ P+ DAN+
Sbjct: 478 PSLAHEIWTIYEERKDGVSSETTINGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 53/239 (22%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLS------------EKL 599
+ ++TP I ET+D + D A+ V+LS E +
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVVALTGELRGPEPM 865
Query: 600 MSNVLFKKLGDYEIAWVDAEVGKTENG-------------MLSLLPISTPAPPH---KSV 643
+++ + + +E +L +LP++ A + +
Sbjct: 866 VADEDGPGMSQKKQRMFSENASSSEGNEQKQLVPRKHSFPLLDVLPVNMAAATRSVTRPL 925
Query: 644 LVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 701
VGDL++ADL+ + S G EF G G L +V +RK SGT +I IEG
Sbjct: 926 HVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEIEG 974
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 8 TPLSGVFNE--NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + T+ VLL+H
Sbjct: 5 TPLLGAQSSGSRAVQSILELDGGVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS 104
H+GA + K L P+++T PV LG + D Y S
Sbjct: 65 PSHIGAFAHCCKTFPLFNQIPIYATSPVIALGRTLLQDLYSS 106
>gi|294883712|ref|XP_002771037.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239874243|gb|EER02853.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1050
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 163/400 (40%), Gaps = 112/400 (28%)
Query: 47 PLSKVAS----TIDAVLLSHPDTLHLGALPYAMKQL------------------------ 78
P+SK S ID LLS D H GA PY L
Sbjct: 19 PISKDTSQYQMAIDVCLLSFADLQHCGAWPYVYCHLRPKKLQYAVAPPPVGEADAAASSS 78
Query: 79 --------GLSAPVFSTEPVYRLG------------------------LLTMYDQYLS-R 105
A V +TEPV RLG LLT+ D ++
Sbjct: 79 SSKNSNQPSNGAMVLATEPVRRLGELTLTALHEDIDKMRDAVTTTNDWLLTIDDTIMAFN 138
Query: 106 RSVTRLTYSQNYHLS--------GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+VT L Y + + KG + P AG +LGG W+I + ++YAVDY
Sbjct: 139 GAVTPLQYGEGVMFTMRGDAGANAKGPTVRFTPLPAGRMLGGAYWRIDVGSQSMVYAVDY 198
Query: 158 NRRKEKHLNGTVLE--SFVRPAVLITDA---------------------------YNA-- 186
++HLNG L P+VLIT+ Y+A
Sbjct: 199 QMAGDRHLNGMELPPPEQAPPSVLITNTMPPAVEGAVTCAGQGATSNVATESRRTYDAGI 258
Query: 187 ---LHNQPPRQQREMFQDAISKTLRAGGNVLLPVD--SAGRVLELLLILEDYWAEHS--L 239
N+ Q E + ++LR G VLLPVD S GRVLELLL+LE WA +
Sbjct: 259 TASRSNRRYAQAEEALLGMVLRSLRKDGTVLLPVDCCSTGRVLELLLLLEAAWAADAGLQ 318
Query: 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD---NAFLLKHVTLLINKSEL-D 295
YP+ +++ + +D +K +EWM + F+TS + FL +HV L + +
Sbjct: 319 VYPVVYVSPLGDVVLDQIKIRMEWMSRVVHNDFDTSMGFMYHPFLFQHVQLCSSFQDFAQ 378
Query: 296 NAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
N P PK+VLAS ASLE G + +IF D + V+FT
Sbjct: 379 NYPARKPKVVLASSASLEIGDAREIFCRMCGDPNSTVIFT 418
>gi|452825586|gb|EME32582.1| RNA-metabolising metallo-beta-lactamase family protein [Galdieria
sulphuraria]
Length = 370
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 146/349 (41%), Gaps = 38/349 (10%)
Query: 31 LIDCGWNDHFDPSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
++DCG + + P L+ + AV ++H H+GALP ++ G P++ +
Sbjct: 1 MLDCGLHPSYQDDRRYPNFGLAFSYGPLKAVFITHCHADHVGALPILTERWGYDGPIYMS 60
Query: 88 EPVYRLGLLTM----------------------YDQYLSRRSVTRLTYSQNYHLSGKGEG 125
EP +L + Y Q +T++T + GE
Sbjct: 61 EPTRKLSYYILEECVGSWGGDDEWTDSSRSEWSYTQREVESCLTKVTIMEPGQSISVGEN 120
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA-VLITDAY 184
+ V +AGH+LG ++ I D ++Y D+ HL ++ P V++++A
Sbjct: 121 VQVHSWMAGHVLGAYMFSIVVDNHRILYTGDFTSCPTFHLPPARVDDIPYPPDVILSEAT 180
Query: 185 NALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYP 242
A + R Q E Q+ + L GG VL+PV + GR ELLL+LE YW L++P
Sbjct: 181 YATSFKDGRLNNQVEFIQNVLD-CLLDGGKVLVPVFAIGRAQELLLLLEMYWQRFHLSFP 239
Query: 243 IYFLTYVSSSTIDYVKSFLEWMGDSITK-----SFETSRDNAFLLKHVTLLINKSELDNA 297
I F T + + F W T+ S++T ++ LL E D
Sbjct: 240 ILFSTKNAHQVLQIYTEFAHWTRTPSTRDEQMMSYQTWWSRVQVVDPEQLLDAVEEWDR- 298
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
P + L + +L G S +F A D KNL++ GT+ + L
Sbjct: 299 ---PLVALTTPGTLARGLSLQVFRRIAPDEKNLLIIPHFCISGTIEKRL 344
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 162/369 (43%), Gaps = 52/369 (14%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
+ DCG + P+ + + ++ L++H H GA+PY + + +F T
Sbjct: 39 MFDCGLHPALSGVGALPVFEAVDITKVEVCLVTHFHLDHCGAIPYLLSKTKFRGRIFMTS 98
Query: 89 PVYRLG--LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEG--------------------- 125
+ L T Y + SV ++ + Q L+ +G+
Sbjct: 99 ATKAICHLLWTDYARMEQLHSVKKI-FDQPDALNDEGQNEDTEMDELVCGSGLYTFDDVE 157
Query: 126 -------------------IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 166
I V+ + AGH+LG ++ + DG ++Y DY+ K+KHL
Sbjct: 158 FALDKIETIDFHEELTVNNIKVSCYRAGHVLGACMFLVEIDGVRILYTGDYSVEKDKHLP 217
Query: 167 GTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 225
+ + +LI+++ + R QRE F + + G LLPV + GR E
Sbjct: 218 SAEI-PLINVHLLISESTYGIRVHEERGQRESRFMHVVLDIIMREGKCLLPVFALGRSQE 276
Query: 226 LLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 283
+LLIL++YWA + N PI++++ ++S ++ ++F+ GD I +S N F K
Sbjct: 277 ILLILDEYWANNRQLQNVPIFYISPLASKSLKVYETFVGLCGDYIKESIYNGH-NPFNFK 335
Query: 284 HVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
V + ++ N +GP +++ S L+ G S ++F + D +N V+ T GT
Sbjct: 336 FVKYARSVRQIRNYLLREGPCIIMTSPGMLQGGPSLEVFELISPDNRNGVVLTGYTVKGT 395
Query: 342 LARMLQADP 350
LA L+ DP
Sbjct: 396 LADELKKDP 404
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 165/376 (43%), Gaps = 42/376 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN----DHFDPSLLQPLSKVASTIDAVLL 60
++VT L G S+L+S LIDCG N + P L P S+IDAV++
Sbjct: 181 IRVTTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPLSSIDAVVI 240
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTM---------------YDQYLSR 105
+H H G +P K G P+++T P L L YD L R
Sbjct: 241 THAHLDHCGIVPLLFK-YGYEGPIYATPPTRDLSALLQLDYIEVANREGKRPPYDSALIR 299
Query: 106 RSVTRLTYSQNYHLSGKGEGIVVAPHV------AGHLLGGTV--WKITKDGEDVIYAVDY 157
++ R T + NY G+ +AP V +GH+LG + + I + +V + D+
Sbjct: 300 EALKR-TITLNY-----GDVTDIAPDVRLTFYNSGHILGSAIAHFHIGEGLYNVAFTGDF 353
Query: 158 NRRKEKHLNGTVLESFVR-PAVLITDAYNALHN-QPPRQQREM-FQDAISKTLRAGGNVL 214
K K + V +F R V++ Y +H+ QP R++ E+ Q I +TL GG VL
Sbjct: 354 KYEKSKLFDAAV-NNFPRVETVIMESTYGGMHDMQPARREAEIEIQQVIKQTLARGGKVL 412
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+P + GR E++++LE+ + N P+Y + +T + ++ E++ +
Sbjct: 413 IPTFAVGRSQEVMIVLEEAIRRGIIDNVPVYLDGMIWEATAIHT-TYPEYLNVELQDMIF 471
Query: 274 TSRDNAFLLKHVTLLIN--KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 331
N FL + + K E A P +VLA+ + G + + D +N +
Sbjct: 472 HKGQNPFLSPSFVQVDSPQKREKILADPSPCIVLATSGMMNGGPVMEYLKTYGHDRRNTL 531
Query: 332 LFTERGQFGTLARMLQ 347
+F GTL R +Q
Sbjct: 532 IFVGYQAEGTLGRRIQ 547
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 7/227 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG ++ ++Y DYN ++HL ++ ++ +LIT++ A
Sbjct: 204 IRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYAT 262
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ + RE F A+ K + GG VL+P + GR EL ++L++YW +L PIYF
Sbjct: 263 TVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLKVPIYFS 322
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
++ Y K + W + +++ T NAF K+V L NAP GP ++ A
Sbjct: 323 AGLTIQANMYYKMLISWTNQRVKETYATH--NAFDFKNVRSF--DRSLINAP-GPCVLFA 377
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
+ + GFS ++F WA NLV GT+ L P K
Sbjct: 378 TPGMISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTK 424
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + DH D SL+ + + ID ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFST 87
+ G S P++ T
Sbjct: 80 TEVCGYSGPIYMT 92
>gi|398016320|ref|XP_003861348.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322499574|emb|CBZ34647.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 818
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 164/707 (23%), Positives = 277/707 (39%), Gaps = 109/707 (15%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q T + N P +YL+ IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTSVYECTTPNAPYAYLIEIDGVRILFDCGWNDEFDTSFLSKLKPHLPTVHAVVLSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG----LLTMYDQYLSRRSVT-------RL 111
P GALP+ + + V + ++G L + QY + + T +
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKVGVHSVLHSFLYQYPNSHTFTLADGEAFTM 127
Query: 112 TYSQNYH----LSGKGEGIVVAPH----------VAGHLLGGTVWKITKDGEDVIYAVDY 157
T YH L G V + AG +LGG W I +++ Y D+
Sbjct: 128 TVDSIYHSFRSLREPYGGKVTVKNGDVEVNCLAVFAGRMLGGYSWIIKYQIDELFYCPDF 187
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP-------------RQQREMFQDAIS 204
+ + L +P + T A L + P Q + +F++
Sbjct: 188 SVKPSYAL---------KPFDVPTTANIVLASSFPFHMTGSNRTTKYEEQLKNLFKE-FQ 237
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEW 263
TLR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D + E
Sbjct: 238 HTLRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEA 297
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI--- 319
+ D + D+ L +V L +S + P GPK+ +A ASL+ G S ++
Sbjct: 298 LQDYLIL------DDKRLFANV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELLEY 349
Query: 320 FVEWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EELIA 372
FV+ D +L++ TE GT A ++ A + + + ++RR L G +
Sbjct: 350 FVKGNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIELE 409
Query: 373 YEEEQTRLKKEEALKASLVKEEESKASLGPDNN----LSGDPMVIDANNANASADVVEPH 428
+E EQ R + E +V++++ A++ + N G+ + A+
Sbjct: 410 HEMEQRRRELEARSAFQIVQDDDEAATVKGEENDDDDDDGECATAATGHRGATEKAAVCA 469
Query: 429 GGRYRDILID-------GFVPPST----SVAPMFPFYENNSEWD---------DFGEVIN 468
G + G V P S FP E S +G ++
Sbjct: 470 GAKDAVAASKAKAATTLGLVLPPPLHYHSKHLSFPVLETTSTLSAAALKRVDVTYGLPVS 529
Query: 469 PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 528
++ ++ + G + E A + + PSKV + V +C ++ D
Sbjct: 530 EEEQVLLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAVQVNRRCRVVLSDLS 588
Query: 529 GRADGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHC-----LKHVCPHVYTPQIEET 581
G D ++K++L K+V + GSAE C +K T
Sbjct: 589 GYPDALTMKSVLKTKWTFAKKIVGLRGSAEDGRAFLHFCRADKAMKCGSNVFSTTSCGVP 648
Query: 582 IDVTSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAEV 620
+++ + + +Y VQL L ++ K +E+ WV+ E+
Sbjct: 649 LELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGEL 695
>gi|225560694|gb|EEH08975.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus G186AR]
Length = 1010
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 142/357 (39%), Gaps = 78/357 (21%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQ 247
Query: 173 FVRPAVLIT-----DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 227
+P + D ++ L + R ++ D I GG VL+P D++ R LEL
Sbjct: 248 LRKPTAFVCSTRGGDKFSLLGGRKKRD--DLLMDMIRNCFSKGGTVLIPTDTSARALELA 305
Query: 228 LILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD- 277
+LE W E + + +Y T+ +S LEWM + I + FE
Sbjct: 306 YVLEHAWRESAETADGEDPLKSGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGG 365
Query: 278 -----------------------------------NAFLLKHVTLLINKSELDN--APDG 300
F KH+ ++ K++L+ +
Sbjct: 366 DPVAAGGKGRQDGPNQRTPSAAMTDKRGDSSFKNLGPFTFKHLKIVERKAKLEKILGSNT 425
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
PK++L S SL+ G+S + + AS +NLV+ TE F P K +
Sbjct: 426 PKVILTSDTSLDWGYSKHVLQKIASGSENLVILTE--SFSV--------SPNKQMVDNFR 475
Query: 361 RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 417
R L E YEE + + E + L+++ S L ++ P+ DAN+
Sbjct: 476 FRPSLAHEIWTIYEERKDGVSSETTVNGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 59/242 (24%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 611
+ ++TP I ET+D + D A+ V+LS + L +L
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVV---ALTGELRGP 862
Query: 612 EIAWVD--------------AEVGKTENG--------------MLSLLPISTPAPPH--- 640
E D +E + G +L +LP++ A
Sbjct: 863 EPMVADEDGPGMSQKKQRMFSENASSSEGIEQKQLVPRKHSFPLLDVLPVNMAAATRSVT 922
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
+ + VGDL++ADL+ + S G EF G G L +V +RK SGT +I I
Sbjct: 923 RPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEI 972
Query: 700 EG 701
EG
Sbjct: 973 EG 974
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L L + T+ VLL+H H+GA + K L P+
Sbjct: 27 GVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVIALGRTLLQDLYSS 106
>gi|325088985|gb|EGC42295.1| cleavage and polyadenylation specific subunit [Ajellomyces
capsulatus H88]
Length = 1010
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 142/355 (40%), Gaps = 74/355 (20%)
Query: 125 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 172
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V+E
Sbjct: 188 GLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQ 247
Query: 173 FVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
+P + P R++R ++ D I GG VL+P D++ R LEL +
Sbjct: 248 LRKPTAFVCSTRGGDKFSLPGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYV 307
Query: 230 LEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--- 277
LE W E + + +Y T+ +S LEWM + I + FE
Sbjct: 308 LEHAWRESAETADGEDPLKSGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGGDP 367
Query: 278 ---------------------------------NAFLLKHVTLLINKSELDN--APDGPK 302
F KH+ ++ K++++ + PK
Sbjct: 368 VAAGGKGRQDGPNQRTPSAAMTDKRGDSSFKNLGPFTFKHLKIVERKAKIEKILGSNTPK 427
Query: 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 362
++L S SL+ G+S + + AS +NLV+ TE F P K + + R
Sbjct: 428 VILTSDTSLDWGYSKHVLQKIASGSENLVILTE--SFSV--------SPNKQMVDGIRSR 477
Query: 363 VPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 417
L E YEE + + E + L+++ S L ++ P+ DAN+
Sbjct: 478 PSLAHEIWTIYEERKDGVSSETTINGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 566 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLS--------------- 596
+ ++TP I ET+D + D A+ V+LS
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVVALTGELRGPEPM 865
Query: 597 -------------EKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH--- 640
+++ S G+ + V K +L +LP++ A
Sbjct: 866 VADEDGPGMSQKKQRMFSENASSSEGNEQKQLVPR---KHSFPLLDVLPVNMAAATRSVT 922
Query: 641 KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
+ + VGDL++ADL+ + S G EF G G L +V +RK SGT +I I
Sbjct: 923 RPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEI 972
Query: 700 EG 701
EG
Sbjct: 973 EG 974
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 8 TPLSGVFNE--NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + T+ VLL+H
Sbjct: 5 TPLLGAQSSGSRAVQSILELDGGVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS 104
H+GA + K L P+++T PV LG + D Y S
Sbjct: 65 PSHIGAFAHCCKTFPLFNQIPIYATSPVIALGRTLLQDLYSS 106
>gi|261206112|ref|XP_002627793.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
gi|239592852|gb|EEQ75433.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
Length = 983
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 164/418 (39%), Gaps = 93/418 (22%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH-- 62
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLLQELY 64
Query: 63 -PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------------QYL 103
L LP A LS P + R T D +Y
Sbjct: 65 ASAPLAATFLPKATSG-DLSPPSPVPKRATRSADTTNVDHDEPPGILLPPPTSEEIARYF 123
Query: 104 SRRSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158
S + L YSQ + G+ + + AGH +GGT+W I E +IYAVD+N
Sbjct: 124 SL--IHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWN 181
Query: 159 RRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAI 203
+ +E + G V+E +P + T + L R++R ++ D I
Sbjct: 182 QARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLGGRKRRDDLLLDMI 241
Query: 204 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTI 254
+ GG VL+P D++ R LEL +LE W E + + +Y + T+
Sbjct: 242 RSSFSKGGTVLIPTDTSARALELAYVLEHAWRESAETADGADPLKSGALYLAGKKAHGTM 301
Query: 255 DYVKSFLEWMGDSITKSFETSR-----------------------------DNA------ 279
+S LEWM + I + FE D A
Sbjct: 302 RLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMPDKRGDGAFKALGP 361
Query: 280 FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
F K++ ++ K++LD + PK++L S SL+ G+S + A+ +NLV+ TE
Sbjct: 362 FTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIATGSENLVILTE 419
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 506 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 565
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 566 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 603
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 604 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 644
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 645 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 687
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 688 KGGGSGTQQIVIEG 701
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|335775092|gb|AEH58456.1| cleavage and polyadenylation specificity facto subunit 3-like
protein, partial [Equus caballus]
Length = 499
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 174 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 232
++P +LI+++ H R++RE F + + + GG L+PV + GR ELLLIL++
Sbjct: 11 IKPDILISESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDE 70
Query: 233 YWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 290
YW H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 71 YWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKS 128
Query: 291 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++
Sbjct: 129 MDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE- 185
Query: 351 PPKAVKVTMSRRVPL 365
P+ + +++PL
Sbjct: 186 -PEEITTMSGQKLPL 199
>gi|340058172|emb|CCC52525.1| cleavage and polyadenylation specificity factor,putative,
(fragment), partial [Trypanosoma vivax Y486]
Length = 411
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 162/395 (41%), Gaps = 51/395 (12%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
P++YL+ IDG L+DCGW D F S L L + AVL S P+ GALP+ M
Sbjct: 27 TPMAYLIEIDGVRILMDCGWTDEFRVSHLDALMPHIKDVHAVLFSTPEMCSCGALPFVMD 86
Query: 77 QLGLSAPVFSTEPVYRLGL--------------------------LTMYDQYLSRRSVTR 110
+ V + ++GL LT+ Y + RSV +
Sbjct: 87 HVPPGTHVAAAGATTKMGLHGVLHPFLYQFSNRQTWQLESGTEFELTVDKIYSAFRSV-K 145
Query: 111 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170
Y +S K + P G +LGG W I +++ Y D++ + VL
Sbjct: 146 EPYGGKVTISHKDVAVECFPVFTGRMLGGYGWLIKYQIDELFYCPDFSLKPSY-----VL 200
Query: 171 ESFVRP---AVLITDAYNALHNQPPRQQREMFQDAISK----TLRAGGNVLLPVDSAGRV 223
FV P VL D H ++ E +A + TLR G +VL+PV AGR
Sbjct: 201 NRFVPPTTATVLFIDGSPLRHGGGGGRRYEEHLNAFIRDVLGTLRNGKDVLIPVSVAGRG 260
Query: 224 LELLLILEDYWAEH-SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 282
LE+L I+ E S +Y + ++ I + E + D + S + L
Sbjct: 261 LEVLAIVTHLLTEKGSDSYTVVLAALQAAEIISKAGTMTEALRDEVILSEQQ------LF 314
Query: 283 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD----VKNLVLFTERGQ 338
+V E+ P GPK+ +A +L G + ++ + D +NLV+ +
Sbjct: 315 ANVVTCKTAQEVLTVP-GPKVCVADGETLGYGIAAELLEYFLQDDQEGRENLVVLPWAPR 373
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 373
+ A ++ A +++ ++R PL EEL Y
Sbjct: 374 QESNASIIAAASKGDMMQLRYTKRSPLNKEELEEY 408
>gi|332672684|gb|AEE87269.1| cleavage and polyadenylation specific factor 2 [Sepia officinalis]
Length = 129
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 214 LLPVDSAGRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
L+ VD+AGRVLEL +L+ W E L+ Y + L VS + +++ KS +EWM D I +
Sbjct: 1 LIAVDTAGRVLELAQLLDQMWRSTESGLSTYSLALLNNVSFNVVEFAKSQVEWMSDKIMR 60
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
+FE R+N F KH+ L N +EL + PK+VLASM L+ GF+ D+F+ W + KN
Sbjct: 61 AFEDHRNNPFHFKHLKLCHNLAELSKVME-PKVVLASMPDLQCGFARDLFMGWCGNAKNS 119
Query: 331 VLFTER 336
++ T R
Sbjct: 120 IILTSR 125
>gi|331212217|ref|XP_003307378.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297781|gb|EFP74372.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 950
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 35/263 (13%)
Query: 107 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI--------TKDGEDVIYAVDYN 158
SV + YSQ HL K + + H +GH +GGT+W + + +IYA +N
Sbjct: 179 SVIAVRYSQPIHLGRKLRPLTLTAHKSGHTIGGTIWSLRSPLHTVSSASSSTLIYAPIFN 238
Query: 159 RRKEKHLNGTVLES------------FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISK 205
+E HL+ L RP V++ +L ++ R+ + D+I++
Sbjct: 239 HVRESHLDSAALVQATGDGSMRIGLGMSRPMVMVVGTERSLIKGIRKKDRDRILLDSITQ 298
Query: 206 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWM 264
TLRA VL+P D + R++ELLL+L+ +W + L+ +P+ ++ + +++S EWM
Sbjct: 299 TLRASRTVLIPTDPSARLIELLLLLDSHWTQSRLDSFPLCLVSQTGKDVVTFIRSLTEWM 358
Query: 265 GDSITK-SFET------SRDN----AFLLKHVTLL--INKSELDNAPDGPKLVLASMASL 311
++ + SF+ +RD L+H+ + E + PK++LA S+
Sbjct: 359 SPALARSSFDQNHHKRGNRDQNDQGPLRLRHIRFFNSVEALEAELPIRQPKVILAVPLSM 418
Query: 312 EAGFSHDIFVEWASDVKNLVLFT 334
E GFS +F A NL++ T
Sbjct: 419 EYGFSRAMFTRIAGVEGNLIILT 441
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 4 SVQVTPLSGVFNENP-LSYLVSIDGFNFLIDCGWNDHFDP----SLLQPLSKVASTIDAV 58
++++TPL G + LSYL+ ID L+DCG D P L L+++ ++D V
Sbjct: 2 AIKLTPLIGAHDSTGILSYLLEIDEGRILLDCGCPDRPTPGEIDGYLNKLAELTPSLDLV 61
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94
LLSHP LG +P +LGL P+++T P +G
Sbjct: 62 LLSHPLLSSLGLVPLLRARLGLRCPIYATLPTKEMG 97
>gi|332862132|ref|XP_001152447.2| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11,
partial [Pan troglodytes]
Length = 332
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 12 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 70
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 71 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 130
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 285
T ++ Y K F+ W I K+F + N F KH+
Sbjct: 131 TGLTEKANHYYKLFIPWTNQKIHKTF--VQRNMFXFKHI 167
>gi|157870438|ref|XP_001683769.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68126836|emb|CAJ04467.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 828
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 119/447 (26%), Positives = 193/447 (43%), Gaps = 69/447 (15%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q TP+ N P +YLV IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTPVYECTTPNAPYAYLVDIDGVRILFDCGWNDEFDTSFLNKLKPHLPTVHAVVLSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG----LLTMYDQYLSRRSVT-------RL 111
P GALP+ + + V + ++G L + QY + + T +
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKIGVHSVLHSFLYQYPNSHTFTLADGEAFTM 127
Query: 112 TYSQNYH------------LSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDY 157
T YH ++ K + + V AG +LGG W I +++ Y D+
Sbjct: 128 TVDSIYHSFRSLREPYGGKVTVKNDDVEVNCFAVFAGRMLGGYSWTIKYQIDELFYCPDF 187
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP-------------RQQREMFQDAIS 204
+ + L +P + T A L + P Q + +F++
Sbjct: 188 SVKPSYAL---------KPFDVPTTANIVLASSFPFHMTGANRTTKYEEQLKSLFKE-FQ 237
Query: 205 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEW 263
TLR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D + E
Sbjct: 238 HTLRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEA 297
Query: 264 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI--- 319
+ D + D+ L V L +S + P GPK+ +A ASL+ G S ++
Sbjct: 298 LQDYLIL------DDKRLFASV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELLEY 349
Query: 320 FVEWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EELIA 372
FV+ D +L++ TE GT A ++ A + + + ++RR L G +
Sbjct: 350 FVKGNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIELE 409
Query: 373 YEEEQTRLKKEEALKASLVKEEESKAS 399
+E EQ R + E +V++++ A+
Sbjct: 410 HEMEQRRRELEAQSAFQIVQDDDEAAT 436
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 168/388 (43%), Gaps = 41/388 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAV 58
M V++T L V D + DCG + P+ + S ++
Sbjct: 1 MDDRVRITVLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDISKVEVC 60
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-----QYLSRRSV----- 108
L++H H GA+PY + + + + T + L D Q L+ +++
Sbjct: 61 LVTHFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDD 120
Query: 109 ---------------------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
R+ + ++H I ++ + AGH+LG ++ + D
Sbjct: 121 GMDELVCGSGLYSFEDVEYALDRIE-TIDFHQEITVNDIKISCYRAGHVLGACMFLVEID 179
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
G ++Y DY+ K+KHL + S +LI+++ + R QREM F +
Sbjct: 180 GVRILYTGDYSVEKDKHLPSAEIPS-TNVHLLISESTYGIRVHEERSQREMRFLHVVMDI 238
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWM 264
+ G LLPV + GR E+LLIL++YW + N PI++++ ++S ++ ++F+
Sbjct: 239 IMREGKCLLPVFALGRSQEILLILDNYWENNRQLHNVPIFYISPLASKSLRVYETFVGQC 298
Query: 265 GDSITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVE 322
GD I +S N F K V + ++ N DGP +++ S L+ G S ++F
Sbjct: 299 GDYIKQSVYNGF-NPFDFKFVKYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEVFEL 357
Query: 323 WASDVKNLVLFTERGQFGTLARMLQADP 350
D +N V+ T GTLA L+ DP
Sbjct: 358 ICPDNRNGVVLTGYTVKGTLADELKKDP 385
>gi|385775961|ref|YP_005648529.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|323474709|gb|ADX85315.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
Length = 638
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 41/374 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLS----KVASTIDA 57
V++T L G + LV L+D G N + F L L K+ +DA
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEE-LDA 240
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR 105
V+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 241 VVITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPLPYSAK 299
Query: 106 RSVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAV 155
L T + +Y GE +AP + AGH+LG + + DG+ +++Y
Sbjct: 300 EVRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTG 354
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVL 214
D+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL
Sbjct: 355 DFKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVL 413
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 414 IPVLAVGRGQEIMLIINDFMKKKLIPEVPVYLTGLVDEVTAIH-NAYPEWLGREVREEIL 472
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 473 YKDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIF 531
Query: 334 TERGQFGTLARMLQ 347
GTL R ++
Sbjct: 532 VSYQAEGTLGRKVR 545
>gi|156089433|ref|XP_001612123.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799377|gb|EDO08555.1| hypothetical protein BBOV_III009990 [Babesia bovis]
Length = 943
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 36/343 (10%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-----GLSAP 83
N L++CGW+ F+P + L + S +D ++L+ D H+GALP L GL P
Sbjct: 96 NILVNCGWSLDFEPESIDLLKQCCSDVDVIILTDGDFGHVGALPVIYSWLHVVRDGLGLP 155
Query: 84 -VFSTEPVYRLGLLTMYDQY------------------LSRRSVTRLTYSQNYHLSGKGE 124
+ TE Y+ + D L L Y +++ GE
Sbjct: 156 SILCTEGCYKFARACLVDVLDNATLSYKFEGYNFSDLDLFYSGCVTLRYRESFPFVKSGE 215
Query: 125 G----IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 180
G I + P G +GG VW++ ++ A Y LNG + V++
Sbjct: 216 GWRIHISLLPLNNGVSIGGAVWRLELGTRTIVCAPTYRVESVWFLNGCEFDGIRNADVVV 275
Query: 181 TDAYNALHNQPPR------QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 234
T L +P I TLR+ G+VL+P+D ++++LL L W
Sbjct: 276 TYDQPRLPPEPVNPYVTECNSMSSILSVIGGTLRSHGSVLIPLDVGSQLIDLLFHLNAVW 335
Query: 235 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF-LLKHVTLLINKS 292
+ L YPI ++ ++ I + LE+M +I +F + N +K + +
Sbjct: 336 SNSDLQQYPIVLVSPIAVKLILLFGTCLEYMRTTICHNFLRTLWNPISSMKFIHAVSRLD 395
Query: 293 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
EL + P + +++ +SL+ G S +F + KN ++FT
Sbjct: 396 ELRRFANRPCVFISTCSSLDFGLSSYLFAALSCYKKNSIIFTN 438
>gi|384434275|ref|YP_005643633.1| KH-domain/beta-lactamase-domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|261602429|gb|ACX92032.1| KH-domain/beta-lactamase-domain protein [Sulfolobus solfataricus
98/2]
Length = 635
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 163/373 (43%), Gaps = 39/373 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPL---SKVASTIDAV 58
V++T L G + LV L+D G N + F L L +DAV
Sbjct: 179 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 238
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSRR 106
+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 239 VITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKE 297
Query: 107 SVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAVD 156
L T + +Y GE +AP + AGH+LG + + DG+ +++Y D
Sbjct: 298 VRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGD 352
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVLL 215
+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL+
Sbjct: 353 FKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLI 411
Query: 216 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 412 PVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEILY 470
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 471 KDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFV 529
Query: 335 ERGQFGTLARMLQ 347
GTL R ++
Sbjct: 530 SYQAEGTLGRKVR 542
>gi|227827653|ref|YP_002829433.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|229584857|ref|YP_002843359.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|238619821|ref|YP_002914647.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|227459449|gb|ACP38135.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
gi|228019907|gb|ACP55314.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
gi|238380891|gb|ACR41979.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 638
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 41/374 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLS----KVASTIDA 57
V++T L G + LV L+D G N + F L L K+ +DA
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEE-LDA 240
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR 105
V+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 241 VVITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAK 299
Query: 106 RSVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAV 155
L T + +Y GE +AP + AGH+LG + + DG+ +++Y
Sbjct: 300 EVRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTG 354
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVL 214
D+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL
Sbjct: 355 DFKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVL 413
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 414 IPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEIL 472
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 473 YKDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIF 531
Query: 334 TERGQFGTLARMLQ 347
GTL R ++
Sbjct: 532 VSYQAEGTLGRKVR 545
>gi|342185150|emb|CCC94633.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 308
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 130/301 (43%), Gaps = 41/301 (13%)
Query: 3 TSVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
T++ P S F+ N P+SYL+ IDG L+DCGW+D F S L LS + AVL S
Sbjct: 12 TNIYGAPSSDAFHPNTPMSYLLEIDGVRILMDCGWDDKFSVSYLDALSPYLGNLHAVLFS 71
Query: 62 HPDTLHLGALPYAMKQL------------------GLSAPVFSTEP---VYRLGL----- 95
P+ GALP+ M+++ G+ P P V+RL
Sbjct: 72 SPELRSCGALPFVMERIPPGTYVSAAGATSKMGLHGVLHPFLYLYPNANVWRLETGEEFE 131
Query: 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 155
+T+ Y + RSV R Y ++ +G + G +LGG W I +++ Y
Sbjct: 132 MTVDKVYSAFRSV-RQPYGSKVTVAHRGVEVECFSVFCGRMLGGCGWLIKYQIDELFYCP 190
Query: 156 DYNRRKEKHLNGTVLESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK---TLR 208
D++ + LN FV P + I L R+ E I + TLR
Sbjct: 191 DFSLKPSYALN-----RFVPPTTATLLFIDGTPFHLSGNAGRKYEEQLNVPIREVLNTLR 245
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
G +VL+PV AGR LE+L I+ AE NY + + +S I + E + D
Sbjct: 246 YGKDVLIPVSVAGRGLEVLTIISHLLAEKGGDNYSVVLASLQASEIIAKASTMTESLKDE 305
Query: 268 I 268
+
Sbjct: 306 V 306
>gi|229579166|ref|YP_002837564.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582079|ref|YP_002840478.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284997854|ref|YP_003419621.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|228009880|gb|ACP45642.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012795|gb|ACP48556.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445749|gb|ADB87251.1| beta-lactamase domain protein [Sulfolobus islandicus L.D.8.5]
Length = 638
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 41/374 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLS----KVASTIDA 57
V++T L G + LV L+D G N + F L L K+ +DA
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEE-LDA 240
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR 105
V+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 241 VVITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAK 299
Query: 106 RSVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAV 155
L T + +Y GE +AP + AGH+LG + + DG+ +++Y
Sbjct: 300 EVRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTG 354
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVL 214
D+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL
Sbjct: 355 DFKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVL 413
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 414 IPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEIL 472
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 473 YKDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIF 531
Query: 334 TERGQFGTLARMLQ 347
GTL R ++
Sbjct: 532 VSYQAEGTLGRKVR 545
>gi|385773323|ref|YP_005645889.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|323477437|gb|ADX82675.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 638
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 41/374 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLS----KVASTIDA 57
V++T L G + LV L+D G N + F L L K+ +DA
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEE-LDA 240
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR 105
V+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 241 VVITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPLPYSAK 299
Query: 106 RSVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAV 155
L T + +Y GE +AP + AGH+LG + + DG+ +++Y
Sbjct: 300 EVRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTG 354
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVL 214
D+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL
Sbjct: 355 DFKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVL 413
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 414 IPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEIL 472
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 473 YKDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIF 531
Query: 334 TERGQFGTLARMLQ 347
GTL R ++
Sbjct: 532 VSYQAEGTLGRKVR 545
>gi|227830349|ref|YP_002832129.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|227456797|gb|ACP35484.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
Length = 638
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 41/374 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLS----KVASTIDA 57
V++T L G + LV L+D G N + F L L K+ +DA
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEE-LDA 240
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR 105
V+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 241 VVITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAK 299
Query: 106 RSVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAV 155
L T + +Y GE +AP + AGH+LG + + DG+ +++Y
Sbjct: 300 EVRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTG 354
Query: 156 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVL 214
D+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL
Sbjct: 355 DFKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVL 413
Query: 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 273
+PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 414 IPVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEIL 472
Query: 274 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 473 YKDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIF 531
Query: 334 TERGQFGTLARMLQ 347
GTL R ++
Sbjct: 532 VSYQAEGTLGRKVR 545
>gi|284174985|ref|ZP_06388954.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
Length = 638
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 163/373 (43%), Gaps = 39/373 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPL---SKVASTIDAV 58
V++T L G + LV L+D G N + F L L +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 241
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSRR 106
+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 242 VITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKE 300
Query: 107 SVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAVD 156
L T + +Y GE +AP + AGH+LG + + DG+ +++Y D
Sbjct: 301 VRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGD 355
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVLL 215
+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL+
Sbjct: 356 FKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLI 414
Query: 216 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 415 PVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEILY 473
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 474 KDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFV 532
Query: 335 ERGQFGTLARMLQ 347
GTL R ++
Sbjct: 533 SYQAEGTLGRKVR 545
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 163/402 (40%), Gaps = 90/402 (22%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--------------------IDAVLLS 61
+V+I G + DCG + ++ + PL + + ID ++L+
Sbjct: 22 IVTIGGRKVMFDCGAHSGYNDNRRYPLFSLLESKESPITVNSSNKTEKISNFDIDCIILT 81
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTM----------------------- 98
H H GALPY + LG P+ + P L + +
Sbjct: 82 HFHIDHCGALPYFTENLGYDGPILMSYPTKALTPILLKDSCRVQSLKHTKKNPIMDSDKS 141
Query: 99 ------------YDQYLS------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 140
Y++ L+ +S++R Q + + G+ + + P+ AGH+LG +
Sbjct: 142 FMALLNENPAASYEESLNFTEQSVEKSLSRAIPLQLHSDTHIGD-LTIRPYYAGHVLGAS 200
Query: 141 VWKITKDGEDVIYAV---------------DYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
++ + + V+Y D+N +KHL + + P VLI ++
Sbjct: 201 IFAVRYKSQLVVYTGTNSFNAIRQKTIQLGDFNTMSDKHLGPAKIPK-LEPDVLICESTY 259
Query: 186 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY 244
A +P R+ E+ A+ TL GG VL+PV + GR EL +ILE +W +LNYPIY
Sbjct: 260 ATIVRPSRRSAEVELCKAVKDTLDHGGKVLIPVFAVGRAQELAIILECFWKRVNLNYPIY 319
Query: 245 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304
F +S Y K + D + FE++ +AF H IN+ P ++
Sbjct: 320 FAGGMSERASTYYKLHSYALMDLDGQLFESTLISAF--DHD--FINEKR-------PMVL 368
Query: 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
A+ L G S + WA D NL++ GT+ L
Sbjct: 369 FATPGMLNGGLSLSVCKAWAPDPHNLIIIPGYCIQGTVGNRL 410
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 500 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVA-------PLKLVLVH 552
LI+ K K V+ + +KC + ++ + AD I+ ++HV+ P ++LVH
Sbjct: 410 LIMGEKLIKTVNG--VIDIKCKIRYLSFSAHADSAGIQQFINHVSLIITYIRPKNIILVH 467
Query: 553 GSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSD 587
G + + +H V+ PQ ++I + ++
Sbjct: 468 GERDGIQKFARHIKSEFGIPVFCPQTGQSITIKTE 502
>gi|15897661|ref|NP_342266.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|6015715|emb|CAB57542.1| mRNA 3'-end polyadenylation factor [Sulfolobus solfataricus P2]
gi|13813930|gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 639
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 163/373 (43%), Gaps = 39/373 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPL---SKVASTIDAV 58
V++T L G + LV L+D G N + F L L +DAV
Sbjct: 183 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 242
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSRR 106
+++H H G +P+ K G PV++T P + L D Y ++
Sbjct: 243 VITHAHLDHCGMVPFLFK-YGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKE 301
Query: 107 SVTRL--TYSQNYHLSGKGEGIVVAPHV------AGHLLGGTVWKI-TKDGE-DVIYAVD 156
L T + +Y GE +AP + AGH+LG + + DG+ +++Y D
Sbjct: 302 VRKELLHTITLDY-----GEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGD 356
Query: 157 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAI-SKTLRAGGNVLL 215
+ K K L+ E F R LI + +QP R++ E+ I +KTL GG VL+
Sbjct: 357 FKYAKTKLLDKANTE-FPRVDTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLI 415
Query: 216 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
PV + GR E++LI+ D+ + + P+Y V T + ++ EW+G + +
Sbjct: 416 PVLAVGRGQEIMLIINDFMKKKLIPEVPVYVTGLVDEVTAIH-NAYPEWLGREVREEILY 474
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+N F +H + E D A P ++LA+ L G + + F A D KN ++F
Sbjct: 475 KDENPFTSEHFKRIEGYKE-DIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFV 533
Query: 335 ERGQFGTLARMLQ 347
GTL R ++
Sbjct: 534 SYQAEGTLGRKVR 546
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 159/372 (42%), Gaps = 52/372 (13%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
N + DCG + P+ + S +D L++H H GA+PY + + +F
Sbjct: 42 NVMFDCGLHPALSGVGALPVFEAIDLSKVDLCLITHFHLDHCGAVPYLLSKTSFKGRIFM 101
Query: 87 TEPVYRLGLLTMYD-----QYLSRRSVTRLTYSQN------------------------- 116
T + L D Q + +S+ T ++
Sbjct: 102 TYATKAICHLLWTDYARMEQLQTVKSIFDRTAPRDLQDGSDSKEGLMDELICGSGLYSFD 161
Query: 117 -------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 163
+H GI + + AGH+LG +++ + DG ++Y DY+ ++
Sbjct: 162 DVEYALSKIETIDFHEEKDVGGIKFSCYRAGHVLGASMFLVEMDGVRILYTGDYSTEVDR 221
Query: 164 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 222
H+ + + +LI ++ + R QRE F ++ + + GG LLPV + GR
Sbjct: 222 HVPCAEIPP-INAHLLICESTYGIRIHEERVQRERRFLRSVIEIVTRGGKCLLPVFALGR 280
Query: 223 VLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
E+LLIL++YW A +L PI++++ ++ ++ ++F+ GD I + N F
Sbjct: 281 AQEILLILDEYWQANRNLQPIPIFYISPLAQKSLRVYETFVGLCGDYIKECVYNGF-NPF 339
Query: 281 LLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
V + +E+ DGP +V+ S L+ G S IF + A D +N V+ T
Sbjct: 340 NFTFVKYARSVAEISQYLQADGPCIVMTSPGMLQGGPSLQIFEKIAPDSRNGVVLTGYTV 399
Query: 339 FGTLARMLQADP 350
GTLA L+ DP
Sbjct: 400 KGTLADELRRDP 411
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 162/365 (44%), Gaps = 44/365 (12%)
Query: 26 DGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
+G + DCG + P+ + S ++ L++H H GA+PY + +
Sbjct: 22 EGKQVMFDCGLHPALSGVGALPVFEAISIEKVNLCLVTHFHLDHCGAVPYLVGKTSFKGT 81
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRSVTRLT------YSQNYHLSGKG-------------- 123
+ TEP + L D +++ T Y+ + ++G G
Sbjct: 82 IVMTEPTRVICRLMWADYEKMGKTLQGQTKIGEEGYAMDELITGSGLFNSEDVKKAFEMI 141
Query: 124 -----------EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
+GI + + AGH+LG ++ + G V+Y DY+ +++H+ +
Sbjct: 142 RTIDFHEEIEIDGIKLTCYGAGHVLGACMFMVEIGGIRVLYTGDYSSEQDRHVPKAEIPP 201
Query: 173 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
+ +LI ++ R QRE +I + GG LLPV + GR E+LLILE
Sbjct: 202 -IDVHLLICESTYGTRIHDERTQRETRLIRSILNAVDNGGKCLLPVFALGRAQEILLILE 260
Query: 232 DYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV---- 285
+YW A L+ PI++++ +SS + ++F+ G+ I + + +N + H+
Sbjct: 261 EYWKANRRLHRVPIFYISPLSSKALKVYETFIGVCGEHIKRRVQQG-ENPYHFTHIKYAP 319
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
T+ +S L D P +++ S L+ G S D+F A D +N V+ T GTLA
Sbjct: 320 TVDSVRSHL--LRDAPCVIMTSPGMLQGGPSRDVFEIIAPDNRNGVILTGYTVKGTLADE 377
Query: 346 LQADP 350
L+ +P
Sbjct: 378 LKKEP 382
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 7/227 (3%)
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187
+ + AGH+LG ++ ++Y DYN ++HL ++ ++ +LIT++ A
Sbjct: 1398 IRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYAT 1456
Query: 188 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246
+ + RE F A+ K + GG VL+P + GR EL ++L++YW +L PIYF
Sbjct: 1457 TVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLKVPIYFS 1516
Query: 247 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 306
++ Y K + W + +++ T NAF K+V L NAP GP ++ A
Sbjct: 1517 AGLTIQANMYYKMLISWTNQRVKETYATH--NAFDFKNVRSF--DRSLINAP-GPCVLFA 1571
Query: 307 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 353
+ + GFS ++F WA NLV GT+ L P K
Sbjct: 1572 TPGMISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTK 1618
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + DH D SL+ + + ID ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFST 87
+ G S P++ T
Sbjct: 80 TEVCGYSGPIYMT 92
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 172/402 (42%), Gaps = 54/402 (13%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLK-EG 247
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------Q 101
+DA++++H H G LPY + P+++T P L +L D
Sbjct: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
Query: 102 YLSR--RSVTRLTYSQNY-HLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIYAVD 156
Y R + V + T + +Y + I + H AGH+LG + I ++ D
Sbjct: 308 YRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGD 367
Query: 157 YNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRA 209
+ K + +LE F R L+ ++ N Q PR++ E + I +TL+
Sbjct: 368 F-----KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKR 422
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
GG VL+P + GR E++++LEDY +++ PIY + +T + ++ E++ +
Sbjct: 423 GGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSRRLR 481
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWASDV 327
+ N FL + + N E + D P +++AS L G S + F + A D
Sbjct: 482 EQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDP 541
Query: 328 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
+N ++F GTL R +Q+ R +P+VGEE
Sbjct: 542 RNSIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 573
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 172/402 (42%), Gaps = 54/402 (13%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLK-EG 244
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD------------Q 101
+DA++++H H G LPY + P+++T P L +L D
Sbjct: 245 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 304
Query: 102 YLSR--RSVTRLTYSQNY-HLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIYAVD 156
Y R + V + T + +Y + I + H AGH+LG + I ++ D
Sbjct: 305 YRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGD 364
Query: 157 YNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRA 209
+ K + +LE F R L+ ++ N Q PR++ E + I +TL+
Sbjct: 365 F-----KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKR 419
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 269
GG VL+P + GR E++++LEDY +++ PIY + +T + ++ E++ +
Sbjct: 420 GGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSRRLR 478
Query: 270 KSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWASDV 327
+ N FL + + N E + D P +++AS L G S + F + A D
Sbjct: 479 EQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDP 538
Query: 328 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 369
+N ++F GTL R +Q+ R +P+VGEE
Sbjct: 539 RNSIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 570
>gi|121705410|ref|XP_001270968.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
gi|119399114|gb|EAW09542.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
Length = 1014
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 122/287 (42%), Gaps = 62/287 (21%)
Query: 111 LTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 165
L YSQ + S G+ + + AGH +GGT+W I E ++YAVD+N+ +E +
Sbjct: 170 LKYSQPHQPLSSPFSSPLNGLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVV 229
Query: 166 NGT------------VLESFVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAG 210
G V+E +P L+ P R++R+ + D I +L G
Sbjct: 230 AGAAWFGGSGASGTEVIEQLRKPTALVCSTRGGDKFALPGGRKKRDDLLLDMIRSSLAKG 289
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSLNYP----------IYFLTYVSSSTIDYVKSF 260
G VL+P D++ RVLEL LE W + + +Y +T+ +S
Sbjct: 290 GTVLIPTDTSARVLELAYALEHAWRDAAAGNSESDNVLKGAGLYMAGRKGHTTMRLARSM 349
Query: 261 LEWMGDSITKSFET----------SRDNA--------------------FLLKHVTLLIN 290
+EWM ++I + FE S+ N F KH+ ++
Sbjct: 350 IEWMDENIVREFEAAEGVDAVTGQSQSNTDGQRSGGQGQGKTGPKGVGPFTFKHLKIVER 409
Query: 291 KSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
K L+ A PK+++AS SL+ GF+ + A NL+L TE
Sbjct: 410 KKRLEKLLADQTPKVIIASDTSLDWGFAKESLRLVAEGPNNLLLLTE 456
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 127/346 (36%), Gaps = 114/346 (32%)
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKDE----DM-----------------DQAAMH--- 485
MFP+ D++GE I P++Y+ +E DM D+A H
Sbjct: 624 MFPYVAPRKRGDEYGEFIRPEEYLRAEEREEADMQQRRSEAHTKLGQKRRWDEAGPHGRR 683
Query: 486 ----------IGGDDGKLDEGSASLILDAK---------------------PSKVVSNEL 514
+ GD + + L + P+K V +
Sbjct: 684 PSTSGAKRQQLSGDQKRDTSAADDLSMPDDVDDADAAVSSEDEADEQSFEGPAKAVFEKA 743
Query: 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-- 572
++ + L F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 744 SITINARLAFVDFAGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAG 803
Query: 573 ----------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE--- 619
+YTP ET+D + D A+ V+LS L+ + ++ + + + A+
Sbjct: 804 VDVSFPDMAVIYTPVNGETVDASVDTNAWMVKLSTNLVRRLKWQHVRSLGVVTLTAQLRG 863
Query: 620 --------------------------------VGKTENG--------MLSLLPISTPAPP 639
+G T+ ML +LP + A
Sbjct: 864 PELSVSEEDSDESASKKQKLLMEEASSVATSTLGDTKPAADQSDVFPMLDILPANMAAGT 923
Query: 640 H---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 681
+ + VGDL++ADL+ + + G + EF G G L V +RK
Sbjct: 924 RSMTRPLHVGDLRLADLRKIMQAAGHKAEFRGEGTLLIDSLVAVRK 969
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FD L L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPSHIGAFVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS 104
++T PV LG + D Y S
Sbjct: 87 YATSPVISLGRTLLQDLYAS 106
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,923,856,689
Number of Sequences: 23463169
Number of extensions: 521419533
Number of successful extensions: 1331867
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 1688
Number of HSP's that attempted gapping in prelim test: 1322085
Number of HSP's gapped (non-prelim): 5611
length of query: 721
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 571
effective length of database: 8,839,720,017
effective search space: 5047480129707
effective search space used: 5047480129707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)