BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004964
(721 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/743 (77%), Positives = 651/743 (87%), Gaps = 26/743 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
G D+N S +PM+ID + DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 698
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 699 IEGPLCEDYYKIRAYLYSQFYLL 721
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/742 (71%), Positives = 616/742 (83%), Gaps = 25/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRR V+
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 342 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 401
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 402 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 461
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 462 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGKT++ + L P STPA
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPA-A 657
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G AGQK G +G+QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGSQQIVI 716
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR LYSQFYLL
Sbjct: 717 EGPLCEDYYKIRELLYSQFYLL 738
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/786 (36%), Positives = 437/786 (55%), Gaps = 95/786 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+T+L Y+Q L KG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 338 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 396
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 397 KASLGPDNNLSGDPMV---IDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 453
PD I+ + D+V GR+ GF + MFP+
Sbjct: 412 -----PDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPY 462
Query: 454 YENNSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEG 496
+E + D++GE+IN DDY I D E++ + IG + +G + +
Sbjct: 463 HEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQANGGIVDN 522
Query: 497 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556
L+ KP+K++S T++V + ID+EGR+DG S+ ILS + P +++++HG+AE
Sbjct: 523 DVQLL--EKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE 580
Query: 557 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 616
T+ + +HC ++V V+TPQ E IDVTS++ Y+V+L+E L+S + F+K D E+AWV
Sbjct: 581 GTQVVARHCEQNVGARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
Query: 617 DAEVGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPF 656
D +G E L+L ++ P H SVL+ +LK++D K
Sbjct: 641 DGRLGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT 700
Query: 657 LSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
L I EF+GG L C + +R+V ++ +EG L E+YYKIR LY
Sbjct: 701 LMRNNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLY 750
Query: 716 SQFYLL 721
Q+ ++
Sbjct: 751 EQYAIV 756
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/815 (34%), Positives = 442/815 (54%), Gaps = 127/815 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKP 506
MFP E +WD++GE+I P+D+++ + + +++ + G +G E L P
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDVP 519
Query: 507 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 566
+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 520 TKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR 579
Query: 567 ----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA---- 618
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 580 AFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDM 637
Query: 619 EVGKTENGML-----------------------------------------------SLL 631
V K + G++ ++
Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELGEETEII 697
Query: 632 PISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 686
P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 698 PTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 752
Query: 687 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/817 (34%), Positives = 443/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/817 (34%), Positives = 442/817 (54%), Gaps = 131/817 (16%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 449
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 450 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 504
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 505 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 564
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 565 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 618
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 619 --EVGKTENGML-----------------------------------------------S 629
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 630 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 684
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 685 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust.
Identities = 285/812 (35%), Positives = 442/812 (54%), Gaps = 120/812 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T L G E+ + YL+ +D F FL+DCGW+++F ++ + K +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD 120
Query: 108 -----VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 161
+ +L Y+Q HL GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 277
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 278 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 337
N F +H+TL S+L P PK+VLAS LE GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLTLCHGYSDLARVP-SPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
Query: 338 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
GTLAR L P + + + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYVEKEK------LKKEAAKKLEQSK 413
Query: 398 ASLGPDNNLSGDPMVIDA-NNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 456
+ ++ S ID + A D++ + G + F + PMFP E+
Sbjct: 414 EADLDSSDDSDVEEDIDQITSHKAKHDLMMKNEGSRK----GSFFKQAKKSYPMFPAPED 469
Query: 457 NSEWDDFGEVINPDDYII------KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 510
+WD++GE+I P+D+++ +DE + GD+ +D+ + + P+K V
Sbjct: 470 RIKWDEYGEIIKPEDFLVPELQVTEDEKTKLESGLTNGDE-PMDQDLSDV-----PTKCV 523
Query: 511 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---- 566
S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG +AT+ L + C
Sbjct: 524 STTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGG 583
Query: 567 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGK 622
K + VYTP++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K
Sbjct: 584 KDI--KVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSK 641
Query: 623 TENGML----------------------------------------------------SL 630
+ G++ +L
Sbjct: 642 VDTGVILEERELKDEGEDMEMQVDTQVMDASTIAQQKVIKSLFGDDDKEFSEESEIIPTL 701
Query: 631 LPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKG 689
P+ S P H+SV + + +++D K L +GI EF GG L C V +R+
Sbjct: 702 EPLPSNEVPGHQSVFMNEPRLSDFKQVLLREGIHAEFVGGVLVCNNMVAVRR-------- 753
Query: 690 GGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721
+ T +I +EG LCED++KIR LY Q+ ++
Sbjct: 754 --TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/807 (32%), Positives = 431/807 (53%), Gaps = 109/807 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ T LSG +E+P YL+ ID F L+DCG + + D SLL+PL KVA IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS------------- 107
SH DT H+G LPY + + GL+ ++ T PV ++G + +YD Y ++ S
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNID 120
Query: 108 -------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
L++SQ+Y LSGKG+GI + P++AGH +G +VWKITK ++YA+DYN R
Sbjct: 121 SCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHR 180
Query: 161 KEKHLNGTVLES-FVRPAVLITDAYN-----ALHNQPPRQQREMFQDAISKTLRAGGNVL 214
E HL+ L S ++P++LITD+ A R Q +F+ I++ LR GGNVL
Sbjct: 181 NEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRDQ-SLFE-QINRNLRDGGNVL 238
Query: 215 LPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 272
+PVD+AGRVLELLL +E+YW+++ SL Y + FL S S + +S LE+M + + F
Sbjct: 239 IPVDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKF 298
Query: 273 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 332
E + +N F KH+ +L + EL PD K++L S LE GFS ++F++W SD K L+L
Sbjct: 299 EQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLIL 358
Query: 333 FTERGQFGTLA-RMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 387
FT++ +LA ++++ P K +++ RVPL G+EL+ YE EQ + ++E+ L+
Sbjct: 359 FTQKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDELLQYEMEQAKQREEKRLE 418
Query: 388 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP----- 442
+++E+ + +++A N + +++ + R I+ D V
Sbjct: 419 Q--LRKEQEEREERERLEEEEREQLLNATNQDQLQQLLQLQQQKERGIIDDSMVHMKNPF 476
Query: 443 ------------PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDED--MDQAAMHIGG 488
S+ MFP++E + +W ++GE DD I++++D +++ M
Sbjct: 477 ENDRFDLLDSEFKKQSMITMFPYFEKHLKWGEYGE--EDDDLILRNQDKKVEEVTME--- 531
Query: 489 DDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 548
+ P K+++ L + + C + IDYEG +DGRSIK I+ +AP KL
Sbjct: 532 --------EDEIQEQEIPKKIITQTLRLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKL 583
Query: 549 VLVHGSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 607
VL+ GS + ++ ++ + +++ +Y P I E +D+TSD Y++ L + L++ + K
Sbjct: 584 VLIRGSEQQSQSIENYVKENIRTKGIYIPSIGEQLDLTSDTNVYELLLKDSLVNTLKTSK 643
Query: 608 LGDYEIAWVDAEVGKTENGMLSLLPISTPAP----------------------------- 638
+ DYE++++ +V + + +L + P
Sbjct: 644 ILDYEVSYIQGKVDILDGSNVPVLDLIQSIPINNNNNNNNNNNNNNNNNNNNTTMMTTTT 703
Query: 639 ----PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 694
H +GD+K++DLK L + GIQV+F G L CG V I + G G
Sbjct: 704 TTTNGHDESFIGDIKLSDLKQVLVNAGIQVQFDQGILNCGGLVYIWRDEDHG------GN 757
Query: 695 QQIVIEGPLCEDYYKIRAYLYSQFYLL 721
I ++G + ++YY I+ LY QF ++
Sbjct: 758 SIINVDGIISDEYYLIKELLYKQFQIV 784
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 219/689 (31%), Positives = 364/689 (52%), Gaps = 66/689 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +DG L+DCGW++ F + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH+LGG++W+I + GED++Y VD+N +K
Sbjct: 121 TAFEKVEQVKYNQTVVLKGDS-GVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
E+HLNG ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 ERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 276
GRVLEL +L+ W+ Y + +++V+SS + + KS LEWM + + K +S R
Sbjct: 240 GRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LKHVTL + EL PK+VL S +E+GFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKHVTLCHSHQELMRVR-SPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
Query: 337 GQFGTLARML-----QADP-----PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
TLA L +A+ + + + + +RV L GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAAKLVNMAERANDGVLKHEDRLISLVVKKRVALEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESK------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR 433
L+ E A + + E + A + P ++ + N + D++ ++
Sbjct: 419 LRMERARRQAQANESDDSDDDDIAAPIVPRHSEKDFRSFDGSENDAHTFDIM----AKWD 474
Query: 434 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-------KDEDMDQAAMHI 486
+ F + PMFP+ E +WDD+GEVI P+DY + K ++ D+ +
Sbjct: 475 NQQKASFFKTTKKSFPMFPYIEEKVKWDDYGEVIKPEDYTVISKIDLRKGQNKDEPVVVK 534
Query: 487 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 546
++ + + + P+K V + V+V C + FI+YEG +DG S K +L+ + P
Sbjct: 535 KREEEEEVYNPNDHV-EEMPTKCVEFKNRVEVSCRIEFIEYEGISDGESTKKLLAGLLPR 593
Query: 547 KLVLVHGSAEATEHLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 604
++++VHGS + T L + + P+ +D + + Y+V LS+ L++++
Sbjct: 594 QIIVVHGSRDDTRDLVAYFADSGFDTTMLKAPEAGALVDASVESFIYQVALSDALLADIQ 653
Query: 605 FKKLGD-YEIAWVDAEVGKTE--NGMLSL 630
FK++ + +AW+DA V + E + ML++
Sbjct: 654 FKEVSEGNSLAWIDARVMEKEAIDNMLAV 682
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 638 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEYVTIRKVGPAGQKGGGSGTQQ 696
P H++V V D K++D K L+ KG + EF G L G +IR+ + T
Sbjct: 769 PIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRR----------NDTGV 818
Query: 697 IVIEGPLCEDYYKIRAYLYSQFYLL 721
+EG +DYYK+R Y QF +L
Sbjct: 819 FQMEGAFTKDYYKLRRLFYDQFAVL 843
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 337 bits (863), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 214/687 (31%), Positives = 359/687 (52%), Gaps = 74/687 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR--------------- 105
SHPD LHLG LPY + + GL+APV+ T PVY++G + +YD S
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVD 120
Query: 106 ---RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 161
V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N RK
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRK 179
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 220
++HL+G ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 DRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 221 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 276
GRVLEL +L+ WA Y + +++V+SS + + KS LEWM + + + +S R
Sbjct: 240 GRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSAR 299
Query: 277 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 336
N F LK+V L+ + EL PK+VL S +E GFS ++F++W +D +N V+ T R
Sbjct: 300 YNPFTLKNVNLVHSHLELIKIR-SPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Query: 337 -GQFGTLARMLQADPPP---------KAVKVTMSRRVPLVGEELIAYEE-------EQTR 379
F AR+++ K + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 380 LKKEEALKASLVKEEESKA----------SLGPDNNLSGDPMVIDANNANASADVVEPHG 429
++ E A + + E + L ++ S D + D++ + A
Sbjct: 419 IRMERARRQAQANESDDSDDDDIAAPIVPRLSEKDHRSFDAIENDSHCFDIMA------- 471
Query: 430 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY-IIKDEDMDQA------ 482
++ + F + PM+P+ E +WDD+GEVI P+DY +I DM +
Sbjct: 472 -KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTVISKIDMRKGKNKDEP 530
Query: 483 -AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 541
+H D+ ++ + + P+K V +++ C + FI+YEG +DG S K +L+
Sbjct: 531 VVVHKREDEEEVYNPNDH--DEEMPTKCVEFRNRIEISCRVEFIEYEGISDGESTKKMLA 588
Query: 542 HVAPLKLVLVHGSAEATEHLKQHCLKHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKL 599
+ P ++++VHGS + T L + + + TP E ID + + Y+V LS+ L
Sbjct: 589 GLMPRQIIIVHGSRDDTRDLYAYFTDNGFKKDQLNTPVANELIDASVESFIYQVSLSDAL 648
Query: 600 MSNVLFKKLGD-YEIAWVDAEVGKTEN 625
++ + FK++ + +AW+DA + + E+
Sbjct: 649 LAEIQFKEVSEGNSLAWIDARIQEKES 675
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 626 GMLSLLPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGAL 671
G L L P+ P H+++ V D K+++ K L KG + EF G L
Sbjct: 755 GTLILTPLPKKQIPVHQAIFVNDPKLSEFKNLLVDKGYKAEFFSGTL 801
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 252/800 (31%), Positives = 396/800 (49%), Gaps = 133/800 (16%)
Query: 23 VSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL-S 81
+ +DG + ID G +D SL P +V D +LLSH D H+G L YA + +
Sbjct: 18 IELDGIHIYIDPGSDD----SLKHP--EVPEQPDLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 APVFSTEPVYRLGLLTMYD----QYLSRRS----------VTRLTYSQNYHLSGKGEGIV 127
A +++T P +G +TM D Y+S S + L Y Q L GK G+
Sbjct: 72 AYIYATLPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGKCSGLT 131
Query: 128 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------VLESFVRPAVLI 180
+ + AGH LGGT+W + K+ E V+YAVD+N K+KHLNG +LE+ RP LI
Sbjct: 132 ITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLI 191
Query: 181 TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 238
TDA N+L + P R++R E F +++ +L GG VLLPVD+A RVLEL IL+++W+
Sbjct: 192 TDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251
Query: 239 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
L +PI FL+ S+ TIDY KS +EWMGD+I + F + +N +++ + + S++ +
Sbjct: 252 PLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGIN-ENLLEFRNINTITDFSQISHI 310
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKN-LVLFTERG------------QFGTLAR 344
GPK++LA+ +LE GFS I ++ S+ N L+LFT+R ++ A
Sbjct: 311 GPGPKVILATALTLECGFSQRILLDLMSENSNDLILFTQRSRCPQNSLANQFIRYWERAS 370
Query: 345 MLQADPP-------PKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 397
+ D P +AVK+ + PL GEEL +Y+E + + ++A +L E
Sbjct: 371 KKKRDIPHPVGLYAEQAVKIKT--KEPLEGEELRSYQELEFSKRNKDAEDTAL---EFRN 425
Query: 398 ASLGPDNNLSGDPMVIDANNANASADVVEPH----------GGRYRDILIDGFVPPSTSV 447
++ ++ S D + N PH G + L D V +
Sbjct: 426 RTILDEDLSSSSSSEDDDLDLNTEV----PHVALGSSAFLMGKSFDLNLRDPAVQALHTK 481
Query: 448 APMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSA----SLILD 503
MFP+ E D++GE+I D+ + +E + + DD L + S I D
Sbjct: 482 YKMFPYIEKRRRIDEYGEIIKHQDFSMINEPANTLELENDSDDNALSNSNGKRKWSEIND 541
Query: 504 A------------KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 551
PSK++++E T++V C + FID EG DGRS+KTI+ V P +LVL+
Sbjct: 542 GLQQKKEEEDEDEVPSKIITDEKTIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLI 601
Query: 552 HGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 609
H S E E +K+ C L VY P E I+V+ D+ A+ ++L++ L+ N+++ K+G
Sbjct: 602 HASTEEKEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKNLIWTKVG 661
Query: 610 DYEIAWVDAEVGKTENGM---------------------------------LSLLPISTP 636
+ E++ + A+V ++ L+L
Sbjct: 662 NCEVSHMLAKVEISKPSEEEDKKEEVEKKDGDKERNEEKKEEKETLPVLNALTLRSDLAR 721
Query: 637 APPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ 695
AP +LVG++++A L+ L +GI E G G L CG V +RK+ GG
Sbjct: 722 APRAAPLLVGNIRLAYLRKALLDQGISAELKGEGVLLCGGAVAVRKLS-----GG----- 771
Query: 696 QIVIEGPLCEDYYKIRAYLY 715
+I +EG L +++IR +Y
Sbjct: 772 KISVEGSLSNRFFEIRKLVY 791
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
L+Q + Y P ET+
Sbjct: 423 LRQKIEQEFRVSCYMPANGETV 444
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
L+Q + Y P ET+
Sbjct: 423 LRQKIEQEFRVSCYMPANGETV 444
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETIDVTSD 587
LKQ + + Y P ET + ++
Sbjct: 423 LKQKIEQEFHVNCYMPANGETTTIFTN 449
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
LKQ + + Y P ET+
Sbjct: 423 LKQKIEQELRVSCYMPANGETV 444
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 173/353 (49%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTYS 114
V++SH H GALPY + +G P++ T P + + + D + ++ T S
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 115 Q------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
Q N H + + + + + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
LKQ + + + Y P ET+
Sbjct: 423 LKQKIEQELRVNCYMPANGETV 444
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 48/380 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 SVTRLTYSQ-------------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 153
SV + + + ++H + + GI + AGH+LG ++ + G ++Y
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGN 212
DY+R +++HL L F P + I ++ + + R RE F D I T+ GG
Sbjct: 187 TGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGR 245
Query: 213 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 270
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M D I
Sbjct: 246 VLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRN 305
Query: 271 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 330
F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W SD KN
Sbjct: 306 QFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 331 VLFTERGQFGTLARMLQADP 350
+ GTLA+ + +P
Sbjct: 362 CIIPGYMVEGTLAKTIINEP 381
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 491 GKLDEGSASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 549
G + EG+ + + +P +V + N LT + + +I + AD T L + P ++
Sbjct: 366 GYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 425
Query: 550 LVHGSAEATEHLKQHCLKHV---CPHVYTPQIEETIDV---TSDLCAYKVQLSEK----- 598
LVHG A LKQ L + TP+ E++++ + L +L+EK
Sbjct: 426 LVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVG 485
Query: 599 -LMSNVLFKKLGDYEIAWVD 617
+S +L KK Y+I D
Sbjct: 486 DTVSGILVKKGFTYQIMAPD 505
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 30/353 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP----------------VYRLGLLTMYDQ 101
V++SH H GALPY + +G P++ T+P V + G +
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 102 YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161
+ + + ++ + + + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 162 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 184 DRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F + N F
Sbjct: 243 GRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 333
KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 301 EFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 501 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 560
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEF 422
Query: 561 LKQHCLKHVCPHVYTPQIEETI 582
LKQ + + Y P ET+
Sbjct: 423 LKQKIEQEFRVNCYMPANGETV 444
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 166/316 (52%), Gaps = 24/316 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV-----------YRLGLLTMYDQ 101
ST+D +L+SH H+ +LPY M++ VF T P ++ + M DQ
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQ 128
Query: 102 YLSRR----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 157
+ + R+ + +YH + + EGI P+ AGH+LG ++ + G ++++ DY
Sbjct: 129 LYDEKDLLAAFDRIE-AVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDY 187
Query: 158 NRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 216
+R +++HL+ + RP VLIT++ Y +QP ++ + I T+R GG VL+P
Sbjct: 188 SREEDRHLHVAEVPP-KRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMP 246
Query: 217 VDSAGRVLELLLILEDYWAEH--SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274
V + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D+I K F
Sbjct: 247 VFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIF-- 304
Query: 275 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 334
+ N F+ + V L N + D+ GP ++LAS L+ G S + WA D +N +L T
Sbjct: 305 AERNPFIFRFVKSLRNLEKFDDI--GPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLT 362
Query: 335 ERGQFGTLARMLQADP 350
GT+A+ + +P
Sbjct: 363 GYSVEGTMAKQITNEP 378
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 173/367 (47%), Gaps = 33/367 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRSVT 109
S +D +L+SH H +LPY M++ VF T P +YR LL + + S S +
Sbjct: 60 SIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGSQS 118
Query: 110 RLTYSQN------------------YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
N YH GI AGH+LG +++I G V
Sbjct: 119 SNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRV 178
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 211
++ DY+R ++HLN + +++ + ++P + + I T+ GG
Sbjct: 179 LFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGG 238
Query: 212 NVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
VL+PV + GR EL+LIL++YW++H S PI++ + ++ + ++++ M D
Sbjct: 239 RVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVNMMND 298
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I K F S+ N F+ K++ + N E + GP ++LAS L+ G S D+ W D
Sbjct: 299 NIRKKFRDSQTNPFIFKNIAYIKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLERWCPD 356
Query: 327 VKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKK 382
KNLVL T GT+A+ +L+ D P +VT+ RR + A+ + Q L+
Sbjct: 357 EKNLVLITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAHVDFQENLEF 416
Query: 383 EEALKAS 389
E + AS
Sbjct: 417 IEQINAS 423
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 164/344 (47%), Gaps = 34/344 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
STID +L+SH H +LPY M++ VF T P +YR L
Sbjct: 64 STIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPG 123
Query: 97 ------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
+Y S R+ + +YH + + GI AGH+LG +++I G
Sbjct: 124 QDSSNDNLYSDEDLAESFDRIE-TIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVR 182
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
V++ DY+R ++HLN + +++ + ++P + + I + G
Sbjct: 183 VLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKG 242
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW H PI++ + ++ + ++++ M
Sbjct: 243 GRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMN 302
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F+ S+ N F+ K+++ L N E ++ GP ++LAS L+ G S DI +W
Sbjct: 303 DDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLSRDILEKWCP 360
Query: 326 DVKNLVLFTERGQFGTLARML----QADPPPKAVKVTMSRRVPL 365
+ KNLVL T GT+A+ L +A P ++T+ RR +
Sbjct: 361 EEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQV 404
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 30/325 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLL------------- 96
S ++ +L+SH H +LPY M++ VF T P +YR L
Sbjct: 61 SQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNA 120
Query: 97 ------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
+Y S R+ + +YH + GI + AGH+LG ++++ G
Sbjct: 121 GGVSDENLYTDEDLAESFDRIE-TVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLR 179
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 210
+++ DY+R ++HLN + + +++ + ++P + + I T+ G
Sbjct: 180 ILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKG 239
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFLEWMG 265
G VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++ M
Sbjct: 240 GRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMN 299
Query: 266 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 325
D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 300 DKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWCP 357
Query: 326 DVKNLVLFTERGQFGTLARMLQADP 350
D KNLVL T GT+A+ L +P
Sbjct: 358 DEKNLVLITGYSVEGTMAKFLMLEP 382
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 192/838 (22%), Positives = 319/838 (38%), Gaps = 197/838 (23%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQY--------------------LSRRSVTRL 111
Y +S V++T PV LG ++ D Y +S + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 112 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 166
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 167 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 223
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 224 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 279 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 312
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 313 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 371
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 372 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 418
A++ + K++ K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 419 NASADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPM 450
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 451 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 471
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 472 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 523
Y + D ++ G G A L +D SK + + VQ+KC ++
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVV 656
Query: 524 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 583
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 584 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 630
++ + + + L + + ++++ D Y +A V + K L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 631 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 685
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 172/361 (47%), Gaps = 45/361 (12%)
Query: 21 YLVSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHL 68
+++S G ++D G + D FD STID +L+SH H
Sbjct: 53 HVISFKGKTIMLDAGVHPAHSGLASLPFYDEFD----------LSTIDILLISHFHLDHA 102
Query: 69 GALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRR-------SVTRLTYSQN-- 116
+LPY M++ VF T P +YR LL+ + + S S LT S N
Sbjct: 103 ASLPYVMQKTNFKGRVFMTHPTKGIYRW-LLSDFVRVTSGAESDPDLYSEADLTASFNKI 161
Query: 117 ----YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 172
YH + + G+ + AGH+LG ++ I G V++ DY+R +++HLN +
Sbjct: 162 ETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPP 221
Query: 173 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 231
++P +LI ++ PR +RE I TL GG LLPV + GR E+LLIL+
Sbjct: 222 -MKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILD 280
Query: 232 DYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 289
+YW H + IY+ + ++ I ++++ M D+I + F + N F K++ +
Sbjct: 281 EYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIK 340
Query: 290 NKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD 349
N D+ GP +++AS L++G S + WA D KN ++ T GT+A+ + +
Sbjct: 341 NLDRFDDM--GPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEGTMAKQIINE 398
Query: 350 P 350
P
Sbjct: 399 P 399
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 41/371 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRL---------------- 93
S +D +L+SH H +LPY M++ VF T P +YR
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 94 -------GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146
GL + D S + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 206
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 261
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 262 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 321
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 322 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 377
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 378 TRLKKEEALKA 388
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 177/375 (47%), Gaps = 38/375 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQ-------------NYHLSG 121
VF T P + + D S T+ Y++ +YH +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTH 160
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+ VLIT
Sbjct: 161 TISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLIT 220
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 221 ESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADF 280
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E S D A + K++
Sbjct: 281 QKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIR 340
Query: 287 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346
L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+A+ +
Sbjct: 341 SLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQI 398
Query: 347 QADPPPKAVKVTMSR 361
+ P ++ MSR
Sbjct: 399 MQE--PDQIQAVMSR 411
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 184/365 (50%), Gaps = 30/365 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-------------NYHLSGKG 123
F +T+ +YR LL+ Y + +S S + Y++ N+H +
Sbjct: 89 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADDMLYTETDLEESMDKIETINFHEVKEV 146
Query: 124 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 147 AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIES 205
Query: 184 YNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LN 240
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 206 TYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHD 265
Query: 241 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 300
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ G
Sbjct: 266 IPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--G 321
Query: 301 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 360
P +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+ +
Sbjct: 322 PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSG 379
Query: 361 RRVPL 365
+++PL
Sbjct: 380 QKLPL 384
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 97 ----TMYDQ---YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
+YD+ S +S + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 208
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 167/324 (51%), Gaps = 32/324 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVF---STEPVYRLGLL---------- 96
ST+DA+L++H H ALPY M++ + V+ +T+ +Y L ++
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 97 ----TMYDQ---YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149
+YD+ S +S + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 208
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 266
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 267 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 326
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 327 VKNLVLFTERGQFGTLARMLQADP 350
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 31/322 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRL------------- 93
ST+DA+L++H H AL Y M++ V+ T P VYR
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 94 --GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 151
L + S R + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTSYHAGHVLGACMFLIEIAGLRI 190
Query: 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 210
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 211 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 268
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 269 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 328
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 329 NLVLFTERGQFGTLARMLQADP 350
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 173/368 (47%), Gaps = 31/368 (8%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW----ND--HF-DPSLLQPLSKVASTID 56
+++V PL + +V+I N + DCG ND F D S + + ID
Sbjct: 2 TIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRSVTRLTY 113
V+++H H GALP+ + G P++ T P + + + D + ++ T
Sbjct: 62 CVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFT 121
Query: 114 SQ------------NYHLSGK-GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160
+Q N H + K E + + + AGH+LG ++ E V+Y DYN
Sbjct: 122 AQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMT 181
Query: 161 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 219
++HL ++ V+P VLIT+ A + ++ RE F I + + GG VL+PV +
Sbjct: 182 PDRHLGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFA 240
Query: 220 AGRVLELLLILEDYWAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 278
GRV EL ++++ YW + +L + PIYF ++ Y K F+ W I ++F + N
Sbjct: 241 LGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTF--VKRN 298
Query: 279 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
F KH+ +S L +AP G ++ A+ L AG S ++F +WA + N+ +
Sbjct: 299 MFDFKHIKPF--QSHLVDAP-GAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCV 355
Query: 339 FGTLARML 346
GT+ L
Sbjct: 356 VGTVGNKL 363
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 510 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 569
+ + T++VKC + + + AD + I ++ P ++LVHG E L Q +K +
Sbjct: 383 IDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEM 442
Query: 570 CPHVYTP 576
+ Y P
Sbjct: 443 GVNCYYP 449
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 174/365 (47%), Gaps = 45/365 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P+ AGH+LG ++ I+ G +
Sbjct: 134 QRTTLYTEHDHL----STLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLN 189
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 190 ILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 249
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLILE+YW H PIY++ + + ++++ M D+
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + K+V L + D+ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDV--GGCVMLASPGMLQTGT 367
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S ++ WA + +N V+ T GT+A+ L + P + MSR +G + +
Sbjct: 368 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PDQIHAVMSRAATGMGRTRMNGND 425
Query: 376 EQTRL 380
E+ ++
Sbjct: 426 EEQKI 430
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 40/378 (10%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRSVTRLTYSQNYHL-------------SG 121
VF T + + D S + L Y++ HL +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 122 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181
I + P+ AGH+LG ++ I G + + DY+R +++HL + V+ VLIT
Sbjct: 160 TISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKIDVLIT 219
Query: 182 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 238
++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +H+
Sbjct: 220 ESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEY 279
Query: 239 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVT 286
YPIY+ + ++ + ++++ M D+I + F E+S D A + + +
Sbjct: 280 QKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDFRFIR 339
Query: 287 LLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L LD D G ++LAS L+ G S ++ WA KN V+ T GT+A+
Sbjct: 340 SL---KSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQ 396
Query: 346 LQADPPPKAVKVTMSRRV 363
L + P+ ++ MSR +
Sbjct: 397 LLQE--PEQIQAVMSRNI 412
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 174/369 (47%), Gaps = 29/369 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVLL 60
+++TP+ L+ G + DCG + + + P + ID +L+
Sbjct: 36 LEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLV 95
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL-GLL---------------TMYDQYLS 104
SH H A+PY + + VF T P + G+L ++D+
Sbjct: 96 SHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDL 155
Query: 105 RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164
RS+ ++ + Y + GI V AGH+LG ++ I G ++Y D++R++++H
Sbjct: 156 DRSLEKIEKVR-YRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRH 214
Query: 165 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 223
L G V+ VLI ++ + PR +RE F ++ + + G L+PV + GR
Sbjct: 215 LMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRA 273
Query: 224 LELLLILEDYW-AEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
ELLLIL++YW A L++ PIY+ + ++ + ++++ M D + F+ S N F
Sbjct: 274 QELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS--NPFE 331
Query: 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 341
KH+ + D+ GP + +AS L++G S +F W SD +N ++ GT
Sbjct: 332 FKHIKNIKGIESFDDR--GPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGT 389
Query: 342 LARMLQADP 350
LA+ + ++P
Sbjct: 390 LAKHIMSEP 398
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 45/365 (12%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVY------------------ 91
ST+D +L+SH H ALPY + + VF +T+ +Y
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 92 -RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150
R L T +D S L + +++ + I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEHDHL----STLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLN 190
Query: 151 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209
+++ DY+R +++HL + ++ VLIT++ + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 267
GG VL+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDN 310
Query: 268 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 315
I + F E S D + + K V L + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDV--GGCVMLASPGMLQTGT 368
Query: 316 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375
S ++ WA + +N V+ T GT+A+ L + P+ + MSR V +A +
Sbjct: 369 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSRSAGGVSRRGLAGTD 426
Query: 376 EQTRL 380
E+ ++
Sbjct: 427 EEQKI 431
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 160/337 (47%), Gaps = 44/337 (13%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYR----------------- 92
S +D +L+SH H +LPY M+ + VF +T+ +YR
Sbjct: 64 SKVDILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSD 123
Query: 93 -----------LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 141
G +Y RS R+ + +YH + + +GI + AGH+LG +
Sbjct: 124 ARLNNSDPNANTGSSNLYTDDDLMRSFDRIE-TIDYHSTIELDGIRFTAYHAGHVLGACM 182
Query: 142 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQ 200
+ I G V++ DY+ +++HL + ++P +LIT++ PR ++E
Sbjct: 183 YFIEIGGLKVLFTGDYSSEEDRHLQVAEVPP-IKPDILITESTFGTATHEPRLEKETRMT 241
Query: 201 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSSTIDYVK 258
+ I TL GG +L+PV + GR ELLLILE+YW+ + N IY+ + ++ + +
Sbjct: 242 NIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQ 301
Query: 259 SFLEWMGDSI----TKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEA 313
++ M DSI + + + + N F K + + N LD D GP +V+AS L+
Sbjct: 302 TYTNIMNDSIRLTTSATNSSKKQNPFQFKFIKSIKN---LDKFQDFGPCVVVASPGMLQN 358
Query: 314 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 350
G S ++ WA D KN V+ T GT+A+ L +P
Sbjct: 359 GVSRELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEP 395
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 33/327 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLL------------- 96
S +D +L+SH H +LPY M+Q VF +T+ +YR +
Sbjct: 150 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 209
Query: 97 ---------TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147
+Y +S R+ + +YH + + +GI + AGH+LG ++ I
Sbjct: 210 EDGGGGEGSNLYTDDDIMKSFDRIE-TIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIG 268
Query: 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 206
G V++ DY+R + +HL+ + ++P +LI+++ PR + E I T
Sbjct: 269 GLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRIELERKLTTHIHAT 327
Query: 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 264
+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++ M
Sbjct: 328 IAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIM 387
Query: 265 GDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 323
D I S +S + N F K++ + + S+ + GP +V+A+ L+AG S + +W
Sbjct: 388 NDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLLEKW 445
Query: 324 ASDVKNLVLFTERGQFGTLARMLQADP 350
A D KNLV+ T GT+A+ L +P
Sbjct: 446 APDGKNLVILTGYSVEGTMAKELLKEP 472
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 30/354 (8%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRSVTRLTYSQNYHLSGKG-------- 123
+ G + P++ + P L L + D + RR L + + K
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQ 139
Query: 124 -----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178
E + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 140 TIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDL 198
Query: 179 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DYW
Sbjct: 199 LISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERM 258
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++ PIYF + ++ Y K + W ++ + T N F K+V L +A
Sbjct: 259 NIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRSLIHA 314
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
P GP ++ A+ L AGFS ++F WA NLV GT+ L A P
Sbjct: 315 P-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 152/370 (41%), Gaps = 30/370 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN----DHFDPSLLQPLSKVASTIDAVLL 60
++V+ L G V LIDCG N D P P + +DAV++
Sbjct: 180 IRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACEDKAFPHFDAPEFSIED-LDAVIV 238
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ------------YLSR--R 106
+H H G +P + + G PV+ T P L L D Y S+ +
Sbjct: 239 THAHLDHCGFIP-GLFRYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIK 297
Query: 107 SVTRLTYSQNYHLSGK-GEGIVVAPHVAGHLLGGTV--WKITKDGEDVIYAVDYNRRKEK 163
+ + T +Y ++ I + H AGH+LG + I + ++ Y D +
Sbjct: 298 TCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSR 357
Query: 164 HLNGTVLESFVRPAVLITDAYNALHN--QPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 221
L V + ++I Y A + + +S+T GG VL+PV G
Sbjct: 358 LLEPAVCQFPRLETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLIPVFGVG 417
Query: 222 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 281
R EL+L+LE+ + + N P+Y + +T + ++ E++ + + DN FL
Sbjct: 418 RAQELMLVLEEGYNQGIFNAPVYLDGMIWEATAIHT-AYPEYLSKEMRQKIFHEGDNPFL 476
Query: 282 ---LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 338
K V + ++ ++ D P ++LA+ L G S + A D KN ++F
Sbjct: 477 SEVFKRVGSTNERRKVIDS-DEPCVILATSGMLTGGPSVEYLKHLAPDEKNAIIFVGYQA 535
Query: 339 FGTLARMLQA 348
GTL R +Q+
Sbjct: 536 EGTLGRKVQS 545
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 107/275 (38%), Gaps = 62/275 (22%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG------LLTMYDQY---- 102
STID +L+S+ ++ ALP+ + +++TEP ++G L+ M QY
Sbjct: 115 STIDMILISNYTNIY--ALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQMDKQYSNSS 172
Query: 103 -----------------------------LSRRSVTRLTY-------------------S 114
+ ++ R +Y S
Sbjct: 173 INNNNNNNNLSDCWQNIEILEKLNVHNVGMENENLYRDSYRWKDLYKKIDIEKSFEKIQS 232
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESF 173
++ S K G P +G+ LG W I G E V+Y D + ++ L
Sbjct: 233 IRFNESIKHYGFECIPSSSGYGLGSANWVIESKGFERVVYISDSSLSLSRYPTPFQLSPI 292
Query: 174 VRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 233
P VLI N N PP Q I TL+ GG VL+P S G +L+L L DY
Sbjct: 293 DNPDVLILSKINHYPNNPPDQMLSELCSNIGSTLQQGGTVLIPSYSCGIILDLFEHLADY 352
Query: 234 WAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDS 267
+ L Y PIYF++ VS + + Y + EW+ S
Sbjct: 353 LNKVGLPYVPIYFVSSVSKAVLSYADIYSEWLNKS 387
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 169/408 (41%), Gaps = 84/408 (20%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVS--------IDGF---NFLIDCGWNDHFD--PSLLQP 47
M T Q TPLS V NE S L S I+GF N L + G D P + P
Sbjct: 32 MSTVNQFTPLSLVNNEK-FSQLKSWSSRELQEIEGFTAQNNLKEAGGRLFIDAEPEVCPP 90
Query: 48 LSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG------LLTMY 99
+ + S +D +L+S + H+ ALP+ + G + +++TEP ++G L+T
Sbjct: 91 ETGLIDFSMVDVILIS--NYHHMLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFA 148
Query: 100 DQYLSRRS-----------------------------------------VTRLTYSQNYH 118
++ RR+ + ++YS+
Sbjct: 149 ERVPKRRNGNMWKNDNVIRCLPAPLNELANVKSWRVLYSKHDVKACISKIQAVSYSEKLD 208
Query: 119 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH---LNGTVLESFVR 175
L G + ++ H +G LG + W + + E + Y + + H LN TVL++
Sbjct: 209 LCGI---LQLSAHSSGFCLGSSNWMLESEYEKISY-LSPSSSFTTHPLPLNQTVLKN--S 262
Query: 176 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 235
++IT A + P E F ++ TLRAGGNVL+P +G + +L L Y
Sbjct: 263 DVLIITGVTEAPIDNPDAMLGE-FCTHLASTLRAGGNVLVPCYPSGVLYDLFECLYTYLD 321
Query: 236 EHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSI-TKSF--ETSRDNAFLLKHVTLLINK 291
L PIYF++ V+ S++ Y + EW+ S TK + E +A LLK L +
Sbjct: 322 NAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEARLKV-F 380
Query: 292 SELDNAPDG----PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
S L N P +V SL G + W N V+FTE
Sbjct: 381 SNLHNGFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTE 428
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 150/380 (39%), Gaps = 32/380 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG-WNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+++ P ++L+ G L+DCG + + P +DAVLL+H
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHA 60
Query: 64 DTLHLGALPYAMKQLGLSAPVFST-------EPVYRLGLLTMYDQYLSRRSVTR------ 110
H+G LP ++ G PV++T E V L M + + V
Sbjct: 61 HLDHVGRLPKLFRE-GYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLR 119
Query: 111 -LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169
L Y + L + +A AGHL G +G ++Y+ D R++ L
Sbjct: 120 PLEYGEWLRLGA----LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPS 175
Query: 170 LESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 229
L VL Y ++P R+ F + + KTL GG VL+P + R E+L +
Sbjct: 176 LPPLAD-LVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYV 234
Query: 230 LEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL---LKHV 285
L Y H L PIY + ++ + + + + + F + N F L+ V
Sbjct: 235 L--YTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGK-NPFRPAGLEVV 291
Query: 286 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 345
L+ AP GP +VLA L G SD +N ++F G L
Sbjct: 292 EHTEASKALNRAP-GPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAE 350
Query: 346 LQADPPPKAVKVTMSRRVPL 365
+ A PP AV++ + VPL
Sbjct: 351 IIARPP--AVRI-LGEEVPL 367
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 153/331 (46%), Gaps = 33/331 (9%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALP-YAMKQLGLSAP----VF 85
L+DCG P + +DAV++SH H GA+P Y K++ + P +F
Sbjct: 28 LLDCG----MSPDTGEIPKVDDKAVDAVIVSHAHLDHCGAIPFYKFKKIYCTHPTADLMF 83
Query: 86 STEPVYR--LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 143
T +R L L Y + + ++ + Y E I + AGH+LG
Sbjct: 84 IT---WRDTLNLTKAYKEEDIQHAMENIECLNYYEERQITENIKFKFYNAGHILGSASIY 140
Query: 144 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA-LHNQPPRQ--QREMFQ 200
+ DG+ ++Y D N + L + ++I Y + L +P R+ +R++ +
Sbjct: 141 LEVDGKKILYTGDINEGVSRTLLPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIE 200
Query: 201 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKS 259
+ IS+T+ GG V++PV + GR E+LLI+ +Y L + PIY + +T Y+ S
Sbjct: 201 E-ISETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLRDVPIYTDGSLIHATAVYM-S 258
Query: 260 FLEWMGDSITKSFETSRDNAF-LLKHV--TLLINKSELDNAPDGPKLVLASMASLEAGFS 316
++ W+ I K+ +R N F +K +L+ NK P +++++ ++ G
Sbjct: 259 YINWLNPKI-KNMVENRINPFGEIKKADESLVFNKE--------PCIIVSTSGMVQGGPV 309
Query: 317 HDIFVEWASDVKNLVLFTERGQFGTLARMLQ 347
+++ D KN ++ T GTL R L+
Sbjct: 310 LK-YLKLLKDPKNKLILTGYQAEGTLGRELE 339
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 137/342 (40%), Gaps = 70/342 (20%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSR----- 105
ST+D +L+S+ + ALPY ++ G + V++TEP ++G L M + ++ R
Sbjct: 94 STVDVILISNYHCMM--ALPYITERTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQ 151
Query: 106 -------RSVTRL------------TYSQNYHL---------------SGKGE--GIV-V 128
+ V RL T+ + Y + S K E G+V V
Sbjct: 152 SATVWKHKDVQRLLPAPLKDAVEVFTWKKCYSMQEVNAALSKIQLVGYSQKIELFGVVQV 211
Query: 129 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188
P +G+ LG + W I E V Y V + H S VLI +
Sbjct: 212 TPLSSGYALGSSNWVIQSHYEKVSY-VSGSSLLTTHPQPMDQTSLKNSDVLILTGLTQIP 270
Query: 189 NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLT 247
P F ++ T+R+GGNVL+P +G + +LL L Y L N P YF++
Sbjct: 271 TANPDGMVGEFCSNLAMTIRSGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNVPFYFIS 330
Query: 248 YVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL----LINKSELDNAPD---- 299
V++S++++ + F EW+ ++ N L LI ++L + P+
Sbjct: 331 PVANSSLEFSQIFAEWLCH--------NKQNKVYLPEPPFPHAELIQSNKLKHYPNIHGD 382
Query: 300 ------GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
P +V +L G W N V+FTE
Sbjct: 383 FSNDFKQPCVVFTGHPTLRFGDVVHFMELWGKSSLNTVIFTE 424
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 130/339 (38%), Gaps = 64/339 (18%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS-------- 104
ST+D +L+S+ + ALPY + G + V++TEP ++G L M + S
Sbjct: 94 STVDVILISNYHCMM--ALPYITEYTGFTGTVYATEPTVQIGRLLMEELVNSIERVPKAQ 151
Query: 105 ------RRSVTRLT---------------------------------YSQNYHLSGKGEG 125
+ V RL YSQ L G
Sbjct: 152 SASTWKNKEVQRLLPAPLKDAVEVSMWRKCYTMPEVNAALSKIQLVGYSQKIELFG---A 208
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
+ V P +G+ LG + W I E V Y V + H S VLI
Sbjct: 209 VQVTPLSSGYALGSSNWIIQSHYEKVSY-VSGSSLLTTHPQPMDQASLKNSDVLILTGLT 267
Query: 186 ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIY 244
+ P F ++ T+R GGNVL+P +G + +LL L Y L N P Y
Sbjct: 268 QIPTANPDGMVGEFCSNLAMTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNVPFY 327
Query: 245 FLTYVSSSTIDYVKSFLEWMG-DSITKSF--ETSRDNAFL-----LKHVTLLINKSELDN 296
F++ V++S++++ + F EW+ + TK + E +A L LKH + + N
Sbjct: 328 FISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLKHYPSI--HGDFSN 385
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
P ++ SL G W N V+FTE
Sbjct: 386 DFKQPCVIFTGHPSLRFGDVVHFMELWGKSSLNTVIFTE 424
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 132/339 (38%), Gaps = 64/339 (18%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSR----- 105
ST+D +L+S+ + ALPY + G + V++TEP ++G L M + ++ R
Sbjct: 94 STVDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQ 151
Query: 106 -------RSVTRLT---------------------------------YSQNYHLSGKGEG 125
+ + RL YSQ L G
Sbjct: 152 SASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFG---A 208
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
+ V P +G+ LG + W I E V Y V + H S VLI
Sbjct: 209 VQVTPLSSGYALGSSNWIIQSHYEKVSY-VSGSSLLTTHPQPMDQASLKNSDVLILTGLT 267
Query: 186 ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIY 244
+ P F ++ T+R GGNVL+P +G + +LL L Y L + P Y
Sbjct: 268 QIPTANPDSMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSIPFY 327
Query: 245 FLTYVSSSTIDYVKSFLEWMG-DSITKSF--ETSRDNAFL-----LKHVTLLINKSELDN 296
F++ V++S++++ + F EW+ + TK + E +A L LKH + + N
Sbjct: 328 FISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELIQTNKLKHYPSI--HGDFSN 385
Query: 297 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
P +V SL G W N V+FTE
Sbjct: 386 DFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTE 424
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 133/337 (39%), Gaps = 60/337 (17%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSR----- 105
ST+D +L+S+ + ALPY + G + V++TEP ++G L M + ++ R
Sbjct: 94 STVDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTMQIGRLLMEELVNFIERVPKAQ 151
Query: 106 -------RSVTRLT---------------------------------YSQNYHLSGKGEG 125
+ + RL YSQ L G
Sbjct: 152 SASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFG---A 208
Query: 126 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185
+ V P +G+ LG + W I E V Y V + H S VLI
Sbjct: 209 VQVTPLSSGYALGSSNWIIQSHYEKVSY-VSGSSLLTTHPQPMDQASLKNSDVLILTGLT 267
Query: 186 ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIY 244
+ P F ++ T+R GGNVL+P +G + +LL L Y L N P Y
Sbjct: 268 QIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNIPFY 327
Query: 245 FLTYVSSSTIDYVKSFLEWMG-DSITKSF--ETSRDNAFLLKHVTLLINKS---ELDNAP 298
F++ V++S++++ + F EW+ + +K + E +A L++ L +S + N
Sbjct: 328 FISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYRSIHGDFSNDF 387
Query: 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 335
P ++ SL G W N ++FTE
Sbjct: 388 RQPCVLFTGHPSLRFGDVVHFMELWGKSSLNTIIFTE 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,397,047
Number of Sequences: 539616
Number of extensions: 12423354
Number of successful extensions: 34483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 34163
Number of HSP's gapped (non-prelim): 133
length of query: 721
length of database: 191,569,459
effective HSP length: 125
effective length of query: 596
effective length of database: 124,117,459
effective search space: 73974005564
effective search space used: 73974005564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)