Query 004964
Match_columns 721
No_of_seqs 453 out of 3385
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 15:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1135 mRNA cleavage and poly 100.0 8E-146 2E-150 1184.6 62.0 695 5-721 2-764 (764)
2 COG1782 Predicted metal-depend 100.0 4.2E-78 9.1E-83 636.6 36.1 423 5-584 181-636 (637)
3 KOG1136 Predicted cleavage and 100.0 5.4E-77 1.2E-81 599.2 38.4 438 3-606 2-466 (501)
4 TIGR03675 arCOG00543 arCOG0054 100.0 2.7E-73 5.8E-78 652.7 48.3 423 4-584 174-629 (630)
5 KOG1137 mRNA cleavage and poly 100.0 7.5E-67 1.6E-71 555.3 27.0 420 3-586 12-459 (668)
6 COG1236 YSH1 Predicted exonucl 100.0 9.3E-60 2E-64 521.3 40.2 404 5-583 1-426 (427)
7 TIGR00649 MG423 conserved hypo 100.0 4.1E-38 8.9E-43 351.4 38.9 305 5-345 1-333 (422)
8 KOG1138 Predicted cleavage and 100.0 4.4E-39 9.5E-44 339.6 25.6 440 52-671 94-612 (653)
9 PF13299 CPSF100_C: Cleavage a 100.0 3.3E-34 7.2E-39 275.2 11.6 116 593-718 1-161 (161)
10 COG0595 mRNA degradation ribon 100.0 7.5E-26 1.6E-30 253.9 35.6 247 3-261 7-273 (555)
11 PF10996 Beta-Casp: Beta-Casp 99.9 2.8E-25 6.1E-30 206.6 10.4 122 223-346 1-126 (126)
12 PRK11244 phnP carbon-phosphoru 99.7 2.2E-17 4.8E-22 171.9 16.3 167 5-188 1-191 (250)
13 TIGR03307 PhnP phosphonate met 99.7 4.1E-16 8.9E-21 161.2 16.3 155 17-188 26-181 (238)
14 TIGR02651 RNase_Z ribonuclease 99.7 2E-16 4.3E-21 169.1 13.8 170 6-188 1-234 (299)
15 TIGR02649 true_RNase_BN ribonu 99.6 1.3E-15 2.8E-20 163.1 13.1 168 7-187 1-235 (303)
16 PRK02113 putative hydrolase; P 99.6 4.1E-15 9E-20 155.0 15.7 150 18-185 35-193 (252)
17 PRK05184 pyrroloquinoline quin 99.6 9E-15 2E-19 156.1 12.6 157 17-185 38-222 (302)
18 PRK00055 ribonuclease Z; Revie 99.6 4.1E-15 8.8E-20 156.2 9.2 170 4-188 1-200 (270)
19 PRK00685 metal-dependent hydro 99.6 5.8E-14 1.3E-18 143.9 17.3 153 5-183 1-165 (228)
20 PF12706 Lactamase_B_2: Beta-l 99.6 2.9E-14 6.2E-19 141.9 13.3 146 28-187 1-159 (194)
21 TIGR02108 PQQ_syn_pqqB coenzym 99.5 3.2E-14 7E-19 151.4 13.2 161 17-185 37-222 (302)
22 smart00849 Lactamase_B Metallo 99.5 6.3E-14 1.4E-18 137.4 14.2 135 16-162 4-148 (183)
23 PRK02126 ribonuclease Z; Provi 99.5 8.7E-13 1.9E-17 142.4 18.1 173 1-188 1-280 (334)
24 PRK04286 hypothetical protein; 99.5 8.8E-13 1.9E-17 140.6 17.5 171 5-184 1-211 (298)
25 PRK11921 metallo-beta-lactamas 99.4 1.3E-11 2.7E-16 137.1 22.4 130 16-158 31-164 (394)
26 COG1234 ElaC Metal-dependent h 99.4 1.5E-13 3.4E-18 145.6 5.9 175 5-188 2-224 (292)
27 PF00753 Lactamase_B: Metallo- 99.3 2.5E-12 5.5E-17 125.9 8.7 180 17-216 5-192 (194)
28 PRK11709 putative L-ascorbate 99.3 4.5E-11 9.8E-16 129.7 18.1 162 3-183 36-250 (355)
29 PRK05452 anaerobic nitric oxid 99.2 2.4E-11 5.1E-16 137.6 10.8 132 16-158 33-168 (479)
30 TIGR03413 GSH_gloB hydroxyacyl 99.2 2.7E-11 5.8E-16 126.0 10.2 119 18-160 10-130 (248)
31 PLN02469 hydroxyacylglutathion 99.2 6.1E-11 1.3E-15 123.8 11.8 121 19-159 13-138 (258)
32 TIGR02650 RNase_Z_T_toga ribon 99.2 1.2E-10 2.6E-15 120.6 13.6 209 23-248 14-274 (277)
33 PLN02398 hydroxyacylglutathion 99.2 1.1E-10 2.4E-15 125.0 13.3 134 3-160 74-210 (329)
34 PLN02962 hydroxyacylglutathion 99.2 1.6E-10 3.5E-15 119.8 12.3 136 3-159 9-153 (251)
35 KOG1361 Predicted hydrolase in 99.1 3.4E-10 7.4E-15 124.1 13.5 177 52-246 110-292 (481)
36 PRK10241 hydroxyacylglutathion 99.1 1.2E-10 2.7E-15 121.2 9.4 127 6-159 2-130 (251)
37 COG0491 GloB Zn-dependent hydr 99.1 5.8E-10 1.3E-14 114.7 11.2 139 17-161 24-172 (252)
38 PF13483 Lactamase_B_3: Beta-l 99.1 7E-10 1.5E-14 107.8 11.0 131 6-185 1-138 (163)
39 PF07521 RMMBL: RNA-metabolisi 99.1 1.3E-10 2.9E-15 86.4 3.7 42 515-556 2-43 (43)
40 COG2333 ComEC Predicted hydrol 98.9 1.1E-08 2.5E-13 107.5 13.8 198 17-244 53-264 (293)
41 PRK11539 ComEC family competen 98.9 1.1E-08 2.3E-13 122.6 13.9 156 5-184 501-666 (755)
42 COG1237 Metal-dependent hydrol 98.9 1.6E-09 3.5E-14 109.6 5.3 75 18-92 22-96 (259)
43 TIGR00361 ComEC_Rec2 DNA inter 98.9 2.1E-08 4.6E-13 118.5 15.4 158 5-184 440-608 (662)
44 COG1235 PhnP Metal-dependent h 98.8 1.1E-08 2.5E-13 107.7 10.4 124 52-188 60-206 (269)
45 COG0426 FpaA Uncharacterized f 98.8 8.2E-09 1.8E-13 111.1 9.3 132 15-159 33-168 (388)
46 COG2220 Predicted Zn-dependent 98.8 5.9E-08 1.3E-12 101.6 14.8 163 2-184 4-182 (258)
47 KOG0813 Glyoxylase [General fu 98.8 1.6E-08 3.5E-13 103.5 9.3 126 17-160 12-143 (265)
48 KOG2121 Predicted metal-depend 98.6 1.1E-08 2.3E-13 115.8 2.1 177 5-187 443-652 (746)
49 COG2248 Predicted hydrolase (m 98.5 2.4E-06 5.1E-11 85.7 13.0 223 5-235 1-266 (304)
50 PF02112 PDEase_II: cAMP phosp 98.4 1.5E-05 3.3E-10 85.6 19.9 183 6-188 2-255 (335)
51 PF14597 Lactamase_B_5: Metall 97.2 0.0009 2E-08 64.6 7.5 126 9-159 14-139 (199)
52 KOG3798 Predicted Zn-dependent 97.1 0.0034 7.4E-08 63.3 10.0 140 17-162 87-244 (343)
53 KOG0814 Glyoxylase [General fu 96.8 0.0025 5.4E-08 60.9 5.9 115 19-157 22-141 (237)
54 COG5212 PDE1 Low-affinity cAMP 96.7 0.0027 5.8E-08 64.7 5.7 105 53-161 111-236 (356)
55 PF13691 Lactamase_B_4: tRNase 96.0 0.0091 2E-07 48.1 4.0 51 17-70 11-63 (63)
56 KOG4736 Uncharacterized conser 95.3 0.052 1.1E-06 56.5 7.6 120 17-162 94-216 (302)
57 KOG1137 mRNA cleavage and poly 93.5 0.18 4E-06 56.4 7.2 97 5-104 151-261 (668)
58 COG2015 Alkyl sulfatase and re 92.9 0.11 2.3E-06 57.4 4.2 71 18-89 126-202 (655)
59 KOG3592 Microtubule-associated 91.7 0.11 2.4E-06 59.6 2.7 63 8-76 41-103 (934)
60 PRK00685 metal-dependent hydro 64.6 18 0.0004 36.5 6.9 55 529-584 169-228 (228)
61 PF07522 DRMBL: DNA repair met 34.9 48 0.0011 29.7 3.8 32 518-549 72-103 (110)
62 PRK11188 rrmJ 23S rRNA methylt 30.5 73 0.0016 32.1 4.7 63 174-236 116-184 (209)
63 PRK00055 ribonuclease Z; Revie 26.0 1.2E+02 0.0025 31.3 5.4 59 527-586 207-268 (270)
64 PF11019 DUF2608: Protein of u 21.2 1.9E+02 0.0042 30.1 5.8 50 520-572 153-204 (252)
No 1
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=8.2e-146 Score=1184.60 Aligned_cols=695 Identities=48% Similarity=0.851 Sum_probs=613.5
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I 84 (721)
++++.+.|..++++-||+|++||.+|||||||+..++...++++...+++||+|||||+.+-|+|||||++.+++.++||
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPV 81 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceE
Confidence 67788889999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred EechhhHhhhhccchHhhhcCCC------------------eEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE
Q 004964 85 FSTEPVYRLGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146 (721)
Q Consensus 85 y~T~pt~~l~~~~l~d~~~~~~~------------------i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~ 146 (721)
|+|.|+.+||+++++|.++++.+ +.+++|+|++.+.+++.|++|++|+|||++|++.|+|..
T Consensus 82 YAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k 161 (764)
T KOG1135|consen 82 YATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISK 161 (764)
T ss_pred EEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEe
Confidence 99999999999999999987432 899999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCchHHHH
Q 004964 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 225 (721)
Q Consensus 147 ~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~GR~qE 225 (721)
.+++|+|+.||||.+++||+|..++.+.||.+|||++.+....+++|+.|+ .|++.|.+++++||+||||++.+||++|
T Consensus 162 ~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvLE 241 (764)
T KOG1135|consen 162 VGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLE 241 (764)
T ss_pred cCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHHH
Confidence 999999999999999999999999999999999999999998889999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCCCCc
Q 004964 226 LLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 302 (721)
Q Consensus 226 ll~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~~p~ 302 (721)
|+.+|+++|.+. ++ .+||+++|+.+.++++|+++|+|||++++.+.|+.++.|||.|+|+.+|++..++.++.++|+
T Consensus 242 La~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gpk 321 (764)
T KOG1135|consen 242 LALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGPK 321 (764)
T ss_pred HHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCCe
Confidence 999999999987 56 699999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCC-CceeeecceEEecchhhHHHHHHHHHHHH
Q 004964 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRLK 381 (721)
Q Consensus 303 Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~-~~v~~~~~~~v~L~g~el~~y~~~~~~~~ 381 (721)
||+||..+|++|+|+++|..|++||+|.|+||.+.+++|++|.++..+.. +.+.+.+.+|++|+|+||.+|++.+ +.+
T Consensus 322 VVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e-~~r 400 (764)
T KOG1135|consen 322 VVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGE-RLR 400 (764)
T ss_pred EEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhh-hhh
Confidence 99999999999999999999999999999999999999999999866444 8899999999999999999999986 355
Q ss_pred HHHHHHhhhhhhhc---cccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCc
Q 004964 382 KEEALKASLVKEEE---SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 458 (721)
Q Consensus 382 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~ 458 (721)
.|+++.+....+.+ +.+||++||++ +..+....|.. +.+.+..++ ++||++++++++||||+|+|+
T Consensus 401 ~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~----~~~~~~~~~---~~f~~~~~~~~~MFPy~e~r~ 469 (764)
T KOG1135|consen 401 NEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDI----MSKAGKSTK---DGFFKSAKSKHPMFPYIEERR 469 (764)
T ss_pred hhhhHHhhccCCccccccccCCcccccc----cccccccchhh----hhccCCccc---ccccccccccCcccCCcHHhc
Confidence 55554444433322 22333333322 33333333321 111122222 678999999999999999999
Q ss_pred ccCCcCcccCCCcccc-ccccchhhhhccCCCCCCCCcc-----cccccccCCCceEEEeeeEEEEEEEEEEEecccccC
Q 004964 459 EWDDFGEVINPDDYII-KDEDMDQAAMHIGGDDGKLDEG-----SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532 (721)
Q Consensus 459 ~~DdYGe~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D 532 (721)
|||||||+|+|+||.. .++.++.+.........++.++ +.+....+.|+||++....+.|+|+|.+||++|++|
T Consensus 470 k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisD 549 (764)
T KOG1135|consen 470 KWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISD 549 (764)
T ss_pred cccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeecccc
Confidence 9999999999999944 4444444432221111122222 123345789999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccC--CceeecCCCcEEEEceeeeEEEEEeChhhhhcccceecCC
Q 004964 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 610 (721)
Q Consensus 533 ~rsl~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~--~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~~ 610 (721)
+||+++|+++|+||+||||||+.++++.|+..|....+ ++||+|+.||+|++|+++++|+|+|+|.|++.|.|+++++
T Consensus 550 grSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~~ 629 (764)
T KOG1135|consen 550 GRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVGD 629 (764)
T ss_pred chhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeeccc
Confidence 99999999999999999999999999999999998654 8999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecc--------------------------------cCccccccCCCC-CCCCCCceEEccccccchHHHH
Q 004964 611 YEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFL 657 (721)
Q Consensus 611 ~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~iGd~rL~~lk~~L 657 (721)
.+||||+|+|... +...++|+|+.. .+|.|++++|||+||++|||.|
T Consensus 630 ~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~L 709 (764)
T KOG1135|consen 630 AEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQLL 709 (764)
T ss_pred ceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHHH
Confidence 9999999999311 023578888765 5677999999999999999999
Q ss_pred HhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCChhHHHHHHHHhhccccC
Q 004964 658 SSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721 (721)
Q Consensus 658 ~~~g~~aeF~g-G~Lv~~~~V~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~~~~ 721 (721)
+++|++|||+| |+|+|||+|+|||+.+ |+|.|||++|++||+||+++|+|||+|
T Consensus 710 ~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v 764 (764)
T KOG1135|consen 710 TEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV 764 (764)
T ss_pred HhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence 99999999999 8999999999999977 999999999999999999999999986
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=4.2e-78 Score=636.59 Aligned_cols=423 Identities=26% Similarity=0.415 Sum_probs=371.0
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc----cCccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS----LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~----~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
+++|.|||..++|+||+||++.+.+||+|||.+...... ++..-...+..+|||+|||+|+||+|-||+|++ +|+
T Consensus 181 vRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy 259 (637)
T COG1782 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGY 259 (637)
T ss_pred EEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCC
Confidence 789999999999999999999999999999998654311 111112344589999999999999999999997 799
Q ss_pred CccEEechhhHhhhhccchHhhh--cC----------------CCeEEecCCCEEEeccccCCeEEEEecCCCccCceEE
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYL--SR----------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~--~~----------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~ 142 (721)
++|||||+||.+++-++..|+.. .+ ....+++|++..++. .++++|+++|||++||++.
T Consensus 260 ~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa---PDirLTf~NAGHILGSA~~ 336 (637)
T COG1782 260 DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA---PDIRLTFYNAGHILGSAMA 336 (637)
T ss_pred CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC---CccEEEEecccchhcceee
Confidence 99999999999999888888742 11 127789999999997 8999999999999999998
Q ss_pred EEEEC--CeEEEEEecCCCcCccccCcccccccCCCcEEEeeccccc--ccCCCcchHH-HHHHHHHHHHhcCCeEEEec
Q 004964 143 KITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL--HNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 217 (721)
Q Consensus 143 ~I~~~--~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~--~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~ 217 (721)
++..+ ..+|+|||||.+.+.++|++|.. .|.+.+.||+||||+. ..+|+|++.+ +|++.|++|+++||+||||+
T Consensus 337 HlHIGdGlyNi~yTGDfk~~~trLl~~A~n-~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~ 415 (637)
T COG1782 337 HLHIGDGLYNIVYTGDFKFEKTRLLEPANN-KFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPV 415 (637)
T ss_pred EEEecCCceeEEEecccccceeeecChhhc-cCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 88774 47999999999999999999874 4789999999999994 4567888888 99999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHhcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhc
Q 004964 218 DSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 296 (721)
Q Consensus 218 ~~~GR~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~ 296 (721)
|++||.||+|..|+++++++.+ .+||| +++|..++++.+..++|||+..+.+......+|||..+.++.+.+.++..+
T Consensus 416 fAVGR~QEvM~VLee~mr~g~ipe~PVY-lDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~ 494 (637)
T COG1782 416 FAVGRSQEVMIVLEEAMRKGLIPEVPVY-LDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQE 494 (637)
T ss_pred eeccccceehhHHHHHHhcCCCCCCcee-eeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHH
Confidence 9999999999999999999988 59999 579999999999999999999999887777899999999999999887776
Q ss_pred cC--CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHH
Q 004964 297 AP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYE 374 (721)
Q Consensus 297 ~~--~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~ 374 (721)
+. ++||||+||||||+|||+.+||+.||.||+|+++|+|||++||+||+++.. +|++|+.+.
T Consensus 495 i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G----------~kEipi~~~------ 558 (637)
T COG1782 495 IIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSG----------AKEIPIPGE------ 558 (637)
T ss_pred HhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcC----------ceecccccC------
Confidence 64 689999999999999999999999999999999999999999999999953 222111110
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcc
Q 004964 375 EEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 454 (721)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~ 454 (721)
+|
T Consensus 559 ---------------------------------------------------------------~G--------------- 560 (637)
T COG1782 559 ---------------------------------------------------------------DG--------------- 560 (637)
T ss_pred ---------------------------------------------------------------CC---------------
Confidence 00
Q ss_pred ccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-cccccCH
Q 004964 455 ENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRADG 533 (721)
Q Consensus 455 ~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id-~~g~~D~ 533 (721)
.+..++||+.|.-|| ||||+|+
T Consensus 561 ---------------------------------------------------------~te~i~inMeV~tieGFSGHsdr 583 (637)
T COG1782 561 ---------------------------------------------------------KTEVIKVNMEVETIEGFSGHSDR 583 (637)
T ss_pred ---------------------------------------------------------CeEEEEEEEEEEEecCcCCCccH
Confidence 023689999999997 9999999
Q ss_pred HHHHHHhhhcC--CcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 534 RSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 534 rsl~~ii~~l~--PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
+.|...+..++ |+|++++||++.++..||+.++..+.+..++|.+.|+|.+
T Consensus 584 rqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 584 RQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred HHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 99999999995 5799999999999999999999988899999999999865
No 3
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=5.4e-77 Score=599.16 Aligned_cols=438 Identities=27% Similarity=0.494 Sum_probs=390.8
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc-------cCccccCCCCCccEEEecCCchhhhCchHHHH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~-------~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~ 75 (721)
..|+++|||.++++|+||+|+.++|.+|++|||+..+++.. ++..-+.....||+|+|||+|+||+|+|||+.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 46899999888888999999999999999999998776432 22223334567999999999999999999999
Q ss_pred HhcCCCccEEechhhHhhhhccchHhhh---c-C---------------CCeEEecCCCEEEeccccCCeEEEEecCCCc
Q 004964 76 KQLGLSAPVFSTEPVYRLGLLTMYDQYL---S-R---------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 136 (721)
Q Consensus 76 ~~~g~~~~Iy~T~pt~~l~~~~l~d~~~---~-~---------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~ 136 (721)
+-.|+++|||+|.||..+...++.|+.. . + +.+..+...|.+.+. .++.|++|-|||.
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD---~dl~IrayYAGHV 158 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD---EDLQIRAYYAGHV 158 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec---ccceeeeeecccc
Confidence 9999999999999999999999988742 1 1 127788889999996 7999999999999
Q ss_pred cCceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEE
Q 004964 137 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 215 (721)
Q Consensus 137 ~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLI 215 (721)
+|+++|.|..++.+++||||+|.++++||..+++.. .+||+||+|+||+.....+++.|| +|++.+.+++.+||+|||
T Consensus 159 LGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~-~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlI 237 (501)
T KOG1136|consen 159 LGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLI 237 (501)
T ss_pred cceeEEEEEecceeEEEecCccCCcccccchhhhcc-ccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999998877 799999999999998888888888 999999999999999999
Q ss_pred eccCchHHHHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHh
Q 004964 216 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295 (721)
Q Consensus 216 P~~~~GR~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~ 295 (721)
|+|++||+|||..+|+.+|++.++.+|||+.++.+.++..||+.++.|.++.+.+++.. .|+|+|+|++.+... ..
T Consensus 238 PvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~--rNmfdfkhiKpfd~~--~~ 313 (501)
T KOG1136|consen 238 PVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVE--RNMFDFKHIKPFDRS--YI 313 (501)
T ss_pred EeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhcc--CCccccccCChhhhh--hh
Confidence 99999999999999999999999999999999999999999999999999999988865 799999999877522 12
Q ss_pred ccCCCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHH
Q 004964 296 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 375 (721)
Q Consensus 296 ~~~~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~ 375 (721)
.. ++|+|+|||+|||.+|+|++.|++||+||.|+||+.||+..||.|.++++.
T Consensus 314 ~~-pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G-------------------------- 366 (501)
T KOG1136|consen 314 EA-PGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNG-------------------------- 366 (501)
T ss_pred cC-CCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCC--------------------------
Confidence 22 899999999999999999999999999999999999999999999998842
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccc
Q 004964 376 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 455 (721)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~ 455 (721)
T Consensus 367 -------------------------------------------------------------------------------- 366 (501)
T KOG1136|consen 367 -------------------------------------------------------------------------------- 366 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHH
Q 004964 456 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRS 535 (721)
Q Consensus 456 ~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rs 535 (721)
|+|+-...+.+.|||.|.++.||+|+|...
T Consensus 367 --------------------------------------------------~~kvei~~~~~eirl~V~~maFSaHaDAkG 396 (501)
T KOG1136|consen 367 --------------------------------------------------ATKVEIYGTKVEIRLKVEYMAFSAHADAKG 396 (501)
T ss_pred --------------------------------------------------ccEEEEeeeEEEEEEEEEEeeeccccCchh
Confidence 111111223689999999999999999999
Q ss_pred HHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEEceeeeEEEEEeChhhhhcccce
Q 004964 536 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 606 (721)
Q Consensus 536 l~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~ 606 (721)
|-+++.++.||++.||||++...+.|+..+.+.+++..|.|++||+|.|++.+. .++++.++...+|.=-
T Consensus 397 Im~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGetv~i~s~~~-i~~ri~~~~~~~~~k~ 466 (501)
T KOG1136|consen 397 IMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGETVVISSTTY-IKARIPDEFLVSLSKP 466 (501)
T ss_pred HHHHHHhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCCEEEecccce-eeecCcHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999998776 6889988887776433
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2.7e-73 Score=652.73 Aligned_cols=423 Identities=25% Similarity=0.388 Sum_probs=366.9
Q ss_pred eEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc----cCccccCCCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS----LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 4 ~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~----~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
.|+|++|||++++|+|||+|+.++.+||||||+..+.... .+......+.+||+|||||+|+||+|+||+|++ ++
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g 252 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YG 252 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hC
Confidence 4899999999999999999999999999999997653111 111122346789999999999999999999986 47
Q ss_pred CCccEEechhhHhhhhccchHhhhc------------------CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceE
Q 004964 80 LSAPVFSTEPVYRLGLLTMYDQYLS------------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 141 (721)
Q Consensus 80 ~~~~Iy~T~pt~~l~~~~l~d~~~~------------------~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~ 141 (721)
+++|||||.||.+++..++.|++.- ...+.+++|++++.+. +++++++++|||++||++
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~---~~i~vt~~~AGHilGsa~ 329 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA---PDIKLTFYNAGHILGSAI 329 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec---CCEEEEEecCccccCceE
Confidence 8899999999999998877765321 0236789999999995 689999999999999999
Q ss_pred EEEEEC--CeEEEEEecCCCcCccccCcccccccCCCcEEEeeccccccc--CCCcchHH-HHHHHHHHHHhcCCeEEEe
Q 004964 142 WKITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLLP 216 (721)
Q Consensus 142 ~~I~~~--~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~e-~l~~~I~~~l~~gG~VLIP 216 (721)
|.+... ..+|+||||+++.++++++++.. .+.++|+||+||||+... +++|+.++ +|++.|.+++++||+||||
T Consensus 330 ~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~-~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP 408 (630)
T TIGR03675 330 AHLHIGDGLYNIVYTGDFKYEKTRLLDPAVN-KFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIP 408 (630)
T ss_pred EEEEECCCCEEEEEeCCCCCCCCcCccchhh-cCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 998764 36999999999999888887643 346899999999999877 77888887 9999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHhcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHh
Q 004964 217 VDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 295 (721)
Q Consensus 217 ~~~~GR~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~ 295 (721)
+|++||+|||+++|+++|+.+.+ ++|||+++ |+.+++++|+.++|||++++++.+.....|||.+++++.+.+.+++.
T Consensus 409 ~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~ 487 (630)
T TIGR03675 409 VFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERR 487 (630)
T ss_pred echhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHH
Confidence 99999999999999999998888 89999875 99999999999999999998887776678999999999999998877
Q ss_pred ccC--CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHH
Q 004964 296 NAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 373 (721)
Q Consensus 296 ~~~--~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y 373 (721)
+++ ++|||||||+|||++|++++||++|++||+|+|+|||||++||+||+|++. .+++++.|+.
T Consensus 488 ~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g----------~~~i~i~g~~---- 553 (630)
T TIGR03675 488 EIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSG----------WREIPLTDEG---- 553 (630)
T ss_pred HHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcC----------CcEEEecCCC----
Confidence 764 789999999999999999999999999999999999999999999999853 1111111100
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCc
Q 004964 374 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 453 (721)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~ 453 (721)
T Consensus 554 -------------------------------------------------------------------------------- 553 (630)
T TIGR03675 554 -------------------------------------------------------------------------------- 553 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-cccccC
Q 004964 454 YENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRAD 532 (721)
Q Consensus 454 ~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id-~~g~~D 532 (721)
..+.++|+|+|..+| ||||+|
T Consensus 554 ----------------------------------------------------------~~~~i~v~~~V~~~~gfSaHaD 575 (630)
T TIGR03675 554 ----------------------------------------------------------KTETIKINMEVETVEGFSGHSD 575 (630)
T ss_pred ----------------------------------------------------------CceEEEEEEEEEEeCCccccCC
Confidence 012689999999999 999999
Q ss_pred HHHHHHHhhhcCC--cEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 533 GRSIKTILSHVAP--LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 533 ~rsl~~ii~~l~P--rkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
.+.|..++..++| ++++||||+++++++|++.+++.++.++++|.+||++.+
T Consensus 576 ~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 576 RRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 9999999999965 999999999999999999998888889999999999986
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=7.5e-67 Score=555.29 Aligned_cols=420 Identities=28% Similarity=0.493 Sum_probs=374.2
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc-cCccc-cCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-LLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~-~l~~l-~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
..+.|+|||++.++|+||++++..|++|++|||..+++..- .+..+ ....+.||.++|||+|+||+++||++.++..|
T Consensus 12 d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf 91 (668)
T KOG1137|consen 12 DQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF 91 (668)
T ss_pred CcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccc
Confidence 35789999888888999999999999999999998876421 12212 24578999999999999999999999999899
Q ss_pred CccEEechhhHhhhhccchHhhhc------------------CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEE
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYLS------------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~~------------------~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~ 142 (721)
.+.+|+|.||....+.++.|+..- ...+.++.|.+.+++ .|++|++|.|||++|+|+|
T Consensus 92 ~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev----~gIkf~p~~aGhVlgacMf 167 (668)
T KOG1137|consen 92 IGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEV----NGIKFWPYHAGHVLGACMF 167 (668)
T ss_pred cceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeecccccc----CCeEEEeeccchhhhheee
Confidence 999999999999999988877421 123889999999999 7999999999999999999
Q ss_pred EEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCch
Q 004964 143 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 221 (721)
Q Consensus 143 ~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~G 221 (721)
.++..+.+++||||+....++|+..+.+++ .+||++|+|+||+...|.+|..|+ +|.+.|..++.+||.||+|+||+|
T Consensus 168 ~veiagv~lLyTGd~sreeDrhl~aae~P~-~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlg 246 (668)
T KOG1137|consen 168 MVEIAGVRLLYTGDYSREEDRHLIAAEMPP-TGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALG 246 (668)
T ss_pred eeeeceEEEEeccccchhhcccccchhCCC-CCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecc
Confidence 999999999999999999999999999887 689999999999998888999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-C-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCC
Q 004964 222 RVLELLLILEDYWAEHS-L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299 (721)
Q Consensus 222 R~qEll~~L~~~~~~~~-l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~ 299 (721)
|+|||+.+|+++|..+. + ++|||+.|..|++++..|+.++.-|++.+++.+.. .|||.|+|+..+++.+.... .
T Consensus 247 rAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~--~Npfifk~vs~L~~~D~f~D--~ 322 (668)
T KOG1137|consen 247 RAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSAL--RNPFIFKHVSILRTGDWFDD--E 322 (668)
T ss_pred hHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhcc--CCceEeeccccccccccccc--c
Confidence 99999999999999874 3 89999999999999999999999999999998865 79999999999999887766 5
Q ss_pred CCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHHHHHH
Q 004964 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 379 (721)
Q Consensus 300 ~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~~~~~ 379 (721)
+|+|+.||+|||..|.|+++|++||+|++|++|++||+.+||++..++.+
T Consensus 323 gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~e------------------------------ 372 (668)
T KOG1137|consen 323 GPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSE------------------------------ 372 (668)
T ss_pred CCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcC------------------------------
Confidence 99999999999999999999999999999999999999999999988842
Q ss_pred HHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcc
Q 004964 380 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE 459 (721)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~ 459 (721)
|.++. .++|
T Consensus 373 ------------------------------P~eI~---------------------a~~G-------------------- 381 (668)
T KOG1137|consen 373 ------------------------------PKEIM---------------------AMNG-------------------- 381 (668)
T ss_pred ------------------------------chhhh---------------------cccC--------------------
Confidence 11000 0011
Q ss_pred cCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHH
Q 004964 460 WDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTI 539 (721)
Q Consensus 460 ~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~i 539 (721)
+++++||+|.|+.|++|+|.-.-...
T Consensus 382 ------------------------------------------------------~klp~~m~V~~isFaAhvdy~q~s~f 407 (668)
T KOG1137|consen 382 ------------------------------------------------------RKLPLRMQVEYISFAAHVDYLQNSEF 407 (668)
T ss_pred ------------------------------------------------------CcccccceEEEEEeeechhhhhhHHH
Confidence 14789999999999999999999999
Q ss_pred hhhcCCcEEEEecCCHHHHHHHHHHHhhc-----cCCceeecCCCcEEEEce
Q 004964 540 LSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VCPHVYTPQIEETIDVTS 586 (721)
Q Consensus 540 i~~l~PrkliLv~g~~~~~~~l~~~~~~~-----~~~~v~~P~~ge~v~~~~ 586 (721)
+..++|++||||||+......|++.+.+. ..+++++|++.|.|++--
T Consensus 408 i~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f 459 (668)
T KOG1137|consen 408 IADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYF 459 (668)
T ss_pred HHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeec
Confidence 99999999999999999999999998763 357899999999988654
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-60 Score=521.26 Aligned_cols=404 Identities=28% Similarity=0.417 Sum_probs=347.6
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I 84 (721)
|++.++|++.++|++|++|+.++.+||+|||+.++... ...++....+++|+++|||+|+||+|++|+++.. +++.+|
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~-~~~~~v 78 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRN-GFEGPV 78 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHh-ccCCce
Confidence 46788888888899999999999999999999876542 2222221122799999999999999999999985 467999
Q ss_pred EechhhHhhhhccchHhhhcC-----------------CCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEEC
Q 004964 85 FSTEPVYRLGLLTMYDQYLSR-----------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 147 (721)
Q Consensus 85 y~T~pt~~l~~~~l~d~~~~~-----------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~ 147 (721)
|+|++|..+++.++.|.+... ..+++++|++++.+ ++++|++|+|||++||++|.++.+
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v----~~~~v~~~~AGHilGsa~~~le~~ 154 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEV----GGVKVTFYNAGHILGSAAILLEVD 154 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEe----eeEEEEEecCCCccceeEEEEEeC
Confidence 999999999999999886433 23788999999999 579999999999999999999999
Q ss_pred CeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCchHHHHH
Q 004964 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLEL 226 (721)
Q Consensus 148 ~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~GR~qEl 226 (721)
+++|+||||+++.++++++++..+.. +|+||+|+||+...+++|+.++ .|.+.|.+++.+||+||||+|++||+|||
T Consensus 155 ~~~ilytGD~~~~~~~l~~~a~~~~~--~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQEl 232 (427)
T COG1236 155 GGRILYTGDVKRRKDRLLNGAELPPC--IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQEL 232 (427)
T ss_pred CceEEEEeccCCCcCCCCCccccCCC--CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHHH
Confidence 99999999999999999999976543 7999999999999999999888 99999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHh--ccCCCCcEE
Q 004964 227 LLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD--NAPDGPKLV 304 (721)
Q Consensus 227 l~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~--~~~~~p~Vi 304 (721)
+.+|+.+|.++ ++|||+.++++..+..+++.+.+|+.....+.+... ++.+.+..... ....+|+||
T Consensus 233 l~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~vi 301 (427)
T COG1236 233 LLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR---------FRFVESRRNSMREGIDKGPAVV 301 (427)
T ss_pred HHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---------cccccchhhhhhhhccCCceEE
Confidence 99999999877 899999999999999999999999999988877651 44455444322 223889999
Q ss_pred EEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHHHHHHHHHHH
Q 004964 305 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEE 384 (721)
Q Consensus 305 ~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~~~~~~~~~~ 384 (721)
++++||+.+|+++.+++.|+++++|.++|++||.++|+||.+++.+.
T Consensus 302 ~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~--------------------------------- 348 (427)
T COG1236 302 LAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT--------------------------------- 348 (427)
T ss_pred EEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCc---------------------------------
Confidence 99999999999999999999999999999999999999999974200
Q ss_pred HHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCCcC
Q 004964 385 ALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFG 464 (721)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~~DdYG 464 (721)
T Consensus 349 -------------------------------------------------------------------------------- 348 (427)
T COG1236 349 -------------------------------------------------------------------------------- 348 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhcC
Q 004964 465 EVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVA 544 (721)
Q Consensus 465 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~ii~~l~ 544 (721)
++.....++.++++|..+||++|+|.+.+..++..+.
T Consensus 349 -------------------------------------------~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~ 385 (427)
T COG1236 349 -------------------------------------------SVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDIS 385 (427)
T ss_pred -------------------------------------------EEeecceeecccceEEEeccccccCcHHHHHHHhcCC
Confidence 0011112578899999999999999999999999999
Q ss_pred CcEEEEecCCHHHHHHHHHHHhh-ccCC-ceeecCCCcEEE
Q 004964 545 PLKLVLVHGSAEATEHLKQHCLK-HVCP-HVYTPQIEETID 583 (721)
Q Consensus 545 PrkliLv~g~~~~~~~l~~~~~~-~~~~-~v~~P~~ge~v~ 583 (721)
|.+++++||+++....+.+.|.. ..+. .++.|.+++.+.
T Consensus 386 ~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~ 426 (427)
T COG1236 386 PPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYE 426 (427)
T ss_pred CceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccccC
Confidence 99999999999887777777766 3455 589999988754
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=4.1e-38 Score=351.39 Aligned_cols=305 Identities=16% Similarity=0.227 Sum_probs=226.1
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCC-ccc-------CccccCCCCCccEEEecCCchhhhCchHHHHH
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSL-------LQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~-~~~-------l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~ 76 (721)
++|++|||.++.|+|||+++.++..||||||...... ... +..+.....++++|||||+|.||+||+|++..
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 4789999999999999999999999999999743211 000 11123335689999999999999999999987
Q ss_pred hcCCCccEEechhhHhhhhccchHh-hhcCCCeEEecCCCEEEeccccCCeEEEEecCCC-ccCceEEEEEECCeEEEEE
Q 004964 77 QLGLSAPVFSTEPVYRLGLLTMYDQ-YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-LLGGTVWKITKDGEDVIYA 154 (721)
Q Consensus 77 ~~g~~~~Iy~T~pt~~l~~~~l~d~-~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH-~~Gs~~~~I~~~~~~Ilyt 154 (721)
.++ ..|||++..|..+.+..+... +.....+..+++++.+++. +++++++++++| ++||++|++++++++++||
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig---~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivyt 156 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG---ENHTIEFIRITHSIPDSVGFALHTPLGYIVYT 156 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC---CceEEEEEECCCCCcceEEEEEEeCCcEEEEC
Confidence 543 468999999988765433211 1112347889999999993 469999999999 5899999999988999999
Q ss_pred ecCCCcCccccC-ccccccc-----CCCcEEEeecccccccCCCcchHH-HHHHHHHHHH-hcCCeEEEeccC--chHHH
Q 004964 155 VDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL-RAGGNVLLPVDS--AGRVL 224 (721)
Q Consensus 155 GD~~~~~~~~l~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l-~~gG~VLIP~~~--~GR~q 224 (721)
||+......... +.++..+ ..+|+||+|+||+.. +.+...+ .+.+.+.+++ +.+|.+++|+|+ ++|+|
T Consensus 157 GD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~--~~~~~~e~~~~~~i~~~~~~~~~~viv~~fa~~~~R~~ 234 (422)
T TIGR00649 157 GDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVEN--PGFTPSEAKVLEQLNDIFKNAKGRVIVATFASNIHRVQ 234 (422)
T ss_pred CCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHhCCCEEEEEEccccHHHHH
Confidence 999886554332 2222111 347999999999862 3233333 6667777777 568899999999 89999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCCCCcEE
Q 004964 225 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 304 (721)
Q Consensus 225 Ell~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~~p~Vi 304 (721)
+++.++.++ +.||++.+.+..++++.++.+ .|++. | ....+ ..+++.+.++++.||
T Consensus 235 ~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~------------~----~~~~~-~~~~i~~~~~~~~vi 290 (422)
T TIGR00649 235 QLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKN------------P----HNNFI-SLKEVNNSPDENYLI 290 (422)
T ss_pred HHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccC------------C----cccee-CHHHHhcCCcccEEE
Confidence 999999887 789999988888888888664 44321 1 11122 356777775679999
Q ss_pred EEcCCCCCcchHHHHHHHHcCCC--------CCeEEEecCCCCCChhHH
Q 004964 305 LASMASLEAGFSHDIFVEWASDV--------KNLVLFTERGQFGTLARM 345 (721)
Q Consensus 305 ~as~~~L~~G~s~~~l~~~~~~~--------~n~Iiltg~~~~gT~g~~ 345 (721)
++|++ .+|+ ..++.+++.++ .++|||+ +++++|+.
T Consensus 291 i~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s---~~~~~G~~ 333 (422)
T TIGR00649 291 ITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFS---APPIPGNE 333 (422)
T ss_pred EEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEE---CCCCCcHH
Confidence 99888 6677 77888899875 3788888 56677765
No 8
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=4.4e-39 Score=339.64 Aligned_cols=440 Identities=22% Similarity=0.325 Sum_probs=338.4
Q ss_pred CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHhhh---------------cC-----------
Q 004964 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL---------------SR----------- 105 (721)
Q Consensus 52 ~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~---------------~~----------- 105 (721)
...||+||||..| .+-|||++.++.||.++||+|++|+++|+++|.+... +.
T Consensus 94 ~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk 171 (653)
T KOG1138|consen 94 ASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLK 171 (653)
T ss_pred ccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCch
Confidence 4689999999999 7899999999999999999999999999999887631 00
Q ss_pred --------C-------------CeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCcCccc
Q 004964 106 --------R-------------SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 164 (721)
Q Consensus 106 --------~-------------~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~ 164 (721)
+ .++.+.|+|.+++. |.+.+|++.+||.+||+.|.|.+.++++.|..+-+... .|
T Consensus 172 ~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlf---ga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~lt-th 247 (653)
T KOG1138|consen 172 KAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLF---GALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLT-TH 247 (653)
T ss_pred hhccccceeeeeehhHHHHHHHhheecccceeeecc---ceEEEEeccccccccccceEEecCCcceEEEecCcccc-cC
Confidence 0 17889999999996 78999999999999999999999999999999987654 34
Q ss_pred cCcccccccCCCcEEEeec-ccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCchHHHHHHHHHHHHHHhcCC-Cc
Q 004964 165 LNGTVLESFVRPAVLITDA-YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NY 241 (721)
Q Consensus 165 l~~~~l~~l~~~d~LI~es-t~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~GR~qEll~~L~~~~~~~~l-~~ 241 (721)
..+.+...+...|+||..+ +...... -++.- +|+..|..+++++|+||+|++++|-+.||++.|.+.....++ +.
T Consensus 248 ~r~md~a~Lk~~Dvli~T~lsql~tan--pd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~ 325 (653)
T KOG1138|consen 248 PRPMDQAGLKETDVLIYTGLSQLPTAN--PDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDT 325 (653)
T ss_pred CccccccccccccEEEEecccccccCC--ccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCC
Confidence 4555555677899999765 3333222 23344 999999999999999999999999999999999999999888 89
Q ss_pred cEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeE------EcCCh-HHHhccCCCCcEEEEcCCCCCcc
Q 004964 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT------LLINK-SELDNAPDGPKLVLASMASLEAG 314 (721)
Q Consensus 242 pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~------~~~s~-~e~~~~~~~p~Vi~as~~~L~~G 314 (721)
|+|++|++|...+++.....|||+...+.+..- ++.||...++. ...+. .++.+-++.|||||+++.+|+.|
T Consensus 326 P~yfISpvadSsla~s~ilaEwls~akqnkvyl-pe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfg 404 (653)
T KOG1138|consen 326 PIYFISPVADSSLATSDILAEWLSLAKQNKVYL-PEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFG 404 (653)
T ss_pred cceEecccchhhhhHHHHHHHHHHhhhccceec-cCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhh
Confidence 999999999999999999999999998766543 67888655432 22222 23444458999999999999999
Q ss_pred hHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004964 315 FSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEE 394 (721)
Q Consensus 315 ~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~~~~~~~~~~~~~~~~~~~~ 394 (721)
.+.++++-|..+|+|++|+|+..-+- .+.
T Consensus 405 dv~h~~e~~g~sp~NsvI~tdpD~~~----~~v----------------------------------------------- 433 (653)
T KOG1138|consen 405 DVVHFLECWGLSPKNSVIFTDPDFSY----LLV----------------------------------------------- 433 (653)
T ss_pred HHHHHHHHhcCCCCCceEEeCCCCch----hhh-----------------------------------------------
Confidence 99999999999999999999754331 000
Q ss_pred ccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCCcCcccCCCcccc
Q 004964 395 ESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 474 (721)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~~DdYGe~i~~~~~~~ 474 (721)
.=||
T Consensus 434 -------------------------------------------------------l~Pf--------------------- 437 (653)
T KOG1138|consen 434 -------------------------------------------------------LAPF--------------------- 437 (653)
T ss_pred -------------------------------------------------------hcCC---------------------
Confidence 0022
Q ss_pred ccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecCC
Q 004964 475 KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 554 (721)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~ii~~l~PrkliLv~g~ 554 (721)
-++.+++.|+.+.-+-|-.++.+++.-+|| |++|++..
T Consensus 438 -----------------------------------------rpLamK~i~cpidtrlnfqql~kLlkelqP-k~vlcpea 475 (653)
T KOG1138|consen 438 -----------------------------------------RPLAMKIIYCPIDTRLNFQQLPKLLKELQP-KIVLCPEA 475 (653)
T ss_pred -----------------------------------------ccccceeEeccccccccHHHHHHHHHHhCC-CEEEChhh
Confidence 134556678888889999999999999999 67777544
Q ss_pred HHHHHHHHHHHhh---ccCCceeecCCCcEEEEceeeeEEEEEeChhhhhcccceecC-C-ceEEEEEEEEecccCcccc
Q 004964 555 AEATEHLKQHCLK---HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-D-YEIAWVDAEVGKTENGMLS 629 (721)
Q Consensus 555 ~~~~~~l~~~~~~---~~~~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~-~-~~va~v~g~l~~~~~~~~~ 629 (721)
-.+.--++.. +. .-...+-+-..+|.++...-.+--.|.+.++|+++|+|+++. + +.+|.+.|.|...+ ++..
T Consensus 476 ytqp~~~ap~-~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~~~iAtl~~~L~~~d-~kh~ 553 (653)
T KOG1138|consen 476 YTQPIPLAPI-KTISILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGEFGIATLKGVLLMKD-GKHR 553 (653)
T ss_pred hcCCCCccch-heehhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCceeEEEEEEEEEEEec-Ccee
Confidence 2222222211 11 001235566778888888777778999999999999999997 5 99999999998663 6667
Q ss_pred ccCCCCC----------CC--CC-CceEEccccccchHHHHHhCC---CceEEeC-cEE
Q 004964 630 LLPISTP----------AP--PH-KSVLVGDLKMADLKPFLSSKG---IQVEFAG-GAL 671 (721)
Q Consensus 630 l~p~~~~----------~~--~~-~~~~iGd~rL~~lk~~L~~~g---~~aeF~g-G~L 671 (721)
|.|.... ++ .+ +..--|++.+.++-+.|.+.| |+.+=.| |.-
T Consensus 554 Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn~g~g~~ 612 (653)
T KOG1138|consen 554 LVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDNTGEGKS 612 (653)
T ss_pred eeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHHhhcchhheeeecCCCceE
Confidence 7773321 11 01 223348888899988888776 4555555 533
No 9
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=100.00 E-value=3.3e-34 Score=275.23 Aligned_cols=116 Identities=47% Similarity=0.803 Sum_probs=100.8
Q ss_pred EEeChhhhhcccceecCCceEEEEEEEEeccc------------------------------------------Cccccc
Q 004964 593 VQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTE------------------------------------------NGMLSL 630 (721)
Q Consensus 593 v~L~d~L~~~L~~~~~~~~~va~v~g~l~~~~------------------------------------------~~~~~l 630 (721)
|+|+|+|+++|+||+++||+||||+|+|...+ .+.++.
T Consensus 1 VkL~D~Lv~~Lkwq~v~~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 80 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKVRDYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVLPT 80 (161)
T ss_pred CCCCHHHHhhCCceecCCCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence 68999999999999999999999999999400 001111
Q ss_pred cCC--CCCCCCCCceEEccccccchHHHHHhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCChhH
Q 004964 631 LPI--STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 707 (721)
Q Consensus 631 ~p~--~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aeF~g-G~Lv~~~~V~vrk~~~~~~~~~~~~~g~i~ieG~~~~~y 707 (721)
.++ ....+.|+++||||+||++||++|.+.||+|||+| |+|||||.|+|||.++ |+|+|||++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~Lv~~~~V~VrK~~~----------G~i~ieG~~~~~y 150 (161)
T PF13299_consen 81 LEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVLVCNGGVAVRKSED----------GRIVIEGCLSEDY 150 (161)
T ss_pred cccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeEEECCEEEEEEcCC----------CCEEEEecCchhH
Confidence 111 12346699999999999999999999999999997 9999999999999998 9999999999999
Q ss_pred HHHHHHHhhcc
Q 004964 708 YKIRAYLYSQF 718 (721)
Q Consensus 708 y~Vr~~iy~~~ 718 (721)
|+||++||+||
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999997
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.95 E-value=7.5e-26 Score=253.94 Aligned_cols=247 Identities=17% Similarity=0.200 Sum_probs=189.3
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc--------cCccccCCCCCccEEEecCCchhhhCchHHH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS--------LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~--------~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L 74 (721)
+.|+|++|||-++.|.+||+++.++..+++|||.....+.. ....+.....+|++|||||+|.||+||+|+|
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~l 86 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYL 86 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHH
Confidence 46899999999999999999999999999999985432110 1112344567999999999999999999999
Q ss_pred HHhcCCCccEEechhhHhhhhccchHh--hhcCCCeEEecCCCEEEeccccCCeEEEEecCCCc-cCceEEEEEECCeEE
Q 004964 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ--YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-LGGTVWKITKDGEDV 151 (721)
Q Consensus 75 ~~~~g~~~~Iy~T~pt~~l~~~~l~d~--~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-~Gs~~~~I~~~~~~I 151 (721)
+.+.. .+|||+|+.|..+.+.-+.+. ......++.++.+..+++ +++.|++++.-|+ |+|+++.|.++.+.|
T Consensus 87 l~~~~-~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~----~~~~v~f~~vtHSIPds~g~~i~Tp~G~I 161 (555)
T COG0595 87 LKQVL-FAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKF----GSFEVEFFPVTHSIPDSLGIVIKTPEGNI 161 (555)
T ss_pred HhcCC-cCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEe----CcEEEEEEeecccCccceEEEEECCCccE
Confidence 98544 499999999999887665533 233356899999999999 7999999999995 689999999999999
Q ss_pred EEEecCCCcCccccCc-ccccc---c--CCCcEEEeecccccccCCCcchHHHHHHHHHHHHh-cCCeEEEeccCc--hH
Q 004964 152 IYAVDYNRRKEKHLNG-TVLES---F--VRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR-AGGNVLLPVDSA--GR 222 (721)
Q Consensus 152 lytGD~~~~~~~~l~~-~~l~~---l--~~~d~LI~est~~~~~~~~r~~~e~l~~~I~~~l~-~gG~VLIP~~~~--GR 222 (721)
+|||||....+..... .++.. + ..+.+||+|||.+..+.-+..++ ...+.+.+.++ ..|.|++.+|++ +|
T Consensus 162 v~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~-~v~~~l~~i~~~a~grVIv~tfaSni~R 240 (555)
T COG0595 162 VYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSES-EVGENLEDIIRNAKGRVIVTTFASNIER 240 (555)
T ss_pred EEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHH-HHHHHHHHHHHhCCCcEEEEEchhhHHH
Confidence 9999999877654421 23321 1 24689999999988332222222 33333333332 378899999985 99
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHH
Q 004964 223 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFL 261 (721)
Q Consensus 223 ~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ 261 (721)
+|.++.+..+. +.++++.+....++...++...
T Consensus 241 i~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg 273 (555)
T COG0595 241 IQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLG 273 (555)
T ss_pred HHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcc
Confidence 99999988887 8899999888888887777653
No 11
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.92 E-value=2.8e-25 Score=206.57 Aligned_cols=122 Identities=38% Similarity=0.640 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhcCC--CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccC--
Q 004964 223 VLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-- 298 (721)
Q Consensus 223 ~qEll~~L~~~~~~~~l--~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~-- 298 (721)
+|||+++|+++|+++.+ ++|||++|+++.+++++|+.++|||++++.+.+.....+ .|++++.+.+.++..++.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 78 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDN--PFDNFKFVKSVDESKELNAL 78 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTT--TTTTEEEEESHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCC--CCCCeEEecccccccccccC
Confidence 69999999999999886 799999999999999999999999999998888763333 567888888877666532
Q ss_pred CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHH
Q 004964 299 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 346 (721)
Q Consensus 299 ~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L 346 (721)
.+|||||||+|||++|+|+++|++|++||+|+||||||+++||+||+|
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 699999999999999999999999999999999999999999999986
No 12
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.75 E-value=2.2e-17 Score=171.91 Aligned_cols=167 Identities=21% Similarity=0.205 Sum_probs=119.7
Q ss_pred EEEEEeecCCC------------------C-----CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEec
Q 004964 5 VQVTPLSGVFN------------------E-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61 (721)
Q Consensus 5 m~~t~lgG~~~------------------~-----g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLT 61 (721)
||+|+||.++. . .++|++|+.++..||||||...- . .. ..+.+||+||||
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~--~---~~--~~~~~i~~i~iT 73 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL--A---ER--FPPGSLQQILLT 73 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH--h---hc--CCcccCCEEEEc
Confidence 58999976665 2 56789999999999999995311 1 11 234689999999
Q ss_pred CCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCe-EEecCCCEEEeccccCCeEEEEecCCCccCce
Q 004964 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV-TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 140 (721)
Q Consensus 62 H~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i-~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~ 140 (721)
|.|.||++|++.+........+||++..+..+...+-. .....+ ..++.++.+.+ ++++|+++++.|..++.
T Consensus 74 H~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~I~~~~~~H~~~s~ 146 (250)
T PRK11244 74 HYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKH---PGILDFSHPLEPFEPFDL----GGLQVTPLPLNHSKLTF 146 (250)
T ss_pred cCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcC---ccccccccccCCCCCeeE----CCEEEEEEeeCCCccee
Confidence 99999999998875432345789998876533221110 011112 34677888888 68999999999999999
Q ss_pred EEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 141 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 141 ~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
+|+|+.++++++|+||+....+.... .+ ...++|+||.|+++...
T Consensus 147 g~~i~~~~~~i~ysgDt~~~~~~~~~--~~-~~~~~Dlli~e~~~~~~ 191 (250)
T PRK11244 147 GYLLETAHSRVAYLTDTVGLPEDTLK--FL-RNNQPDLLVLDCSHPPQ 191 (250)
T ss_pred EEEEecCCeEEEEEcCCCCCCHHHHH--HH-hcCCCCEEEEeCcCCCC
Confidence 99999999999999999765432111 00 01468999999998653
No 13
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.69 E-value=4.1e-16 Score=161.16 Aligned_cols=155 Identities=22% Similarity=0.208 Sum_probs=111.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
.++|++|+.++..||||||+..- . .. .....||+|||||.|.||++|++.+....+.+.+||++..+..+...
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~--~---~~--~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~ 98 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDL--A---ER--FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDL 98 (238)
T ss_pred cceEEEEEECCcEEEEECCChhH--h---hc--cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHH
Confidence 67889999999999999996321 1 11 23468999999999999999998775433446889999877543221
Q ss_pred cchHhhhcCCCe-EEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCcCccccCcccccccCC
Q 004964 97 TMYDQYLSRRSV-TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 175 (721)
Q Consensus 97 ~l~d~~~~~~~i-~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~ 175 (721)
+-. .....+ ..+..++.+.+ ++++|+++++.|..++.+|+|+.++++++|+||+....+.... .+. -.+
T Consensus 99 ~~~---~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~~~~~~~~~--~~~-~~~ 168 (238)
T TIGR03307 99 FKH---PGILDFSKPLEAFEPFDL----GGLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTAGLPPDTEA--FLK-NHP 168 (238)
T ss_pred hcC---cccccccccccCCceEEE----CCEEEEEEecCCCCcceEEEEecCCcEEEEEecCCCCCHHHHH--HHh-cCC
Confidence 110 011112 24677888888 7899999999999999999999999999999999764432111 000 126
Q ss_pred CcEEEeecccccc
Q 004964 176 PAVLITDAYNALH 188 (721)
Q Consensus 176 ~d~LI~est~~~~ 188 (721)
+|+||+|+++...
T Consensus 169 ~D~li~e~~~~~~ 181 (238)
T TIGR03307 169 LDVLILDCSHPPQ 181 (238)
T ss_pred CCEEEEeCCcCcc
Confidence 8999999998653
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.68 E-value=2e-16 Score=169.08 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=119.8
Q ss_pred EEEEeecCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 6 QVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 6 ~~t~lgG~~~-----~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
++++||.++. .+.+|++|+.++.+||||||... ...+........++++|||||.|+||++||+.+.....+
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~---~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~ 77 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT---QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSF 77 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH---HHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhcc
Confidence 4678865554 26789999999999999999531 112222233456899999999999999999988753221
Q ss_pred -----CccEEechhhHhhhhccchHhhhc---CCCeEEecCCC-EEEeccccCCeEEEEecCCCccCceEEEEEEC----
Q 004964 81 -----SAPVFSTEPVYRLGLLTMYDQYLS---RRSVTRLTYSQ-NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD---- 147 (721)
Q Consensus 81 -----~~~Iy~T~pt~~l~~~~l~d~~~~---~~~i~~v~y~q-~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~---- 147 (721)
..+||++..+....+..+.-.... ...+..+..++ .+.. ++++|++++.-|...+.+|+|+.+
T Consensus 78 ~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~H~~~~~gy~i~~~~~~~ 153 (299)
T TIGR02651 78 QGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFED----DGFKVEAFPLDHSIPSLGYRFEEKDRPG 153 (299)
T ss_pred CCCCceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEec----CCEEEEEEEcCCCCceEEEEEEECCCCC
Confidence 467999998876544322111000 11245666666 4666 799999999999989999999864
Q ss_pred ----------------------------------------------CeEEEEEecCCCcCccccCcccccccCCCcEEEe
Q 004964 148 ----------------------------------------------GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 181 (721)
Q Consensus 148 ----------------------------------------------~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~ 181 (721)
+.+++|+||+...+. . .+.+.++|+||+
T Consensus 154 ~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-~-----~~~~~~~dlLi~ 227 (299)
T TIGR02651 154 KFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEE-V-----IEFAKNADLLIH 227 (299)
T ss_pred CcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHH-H-----HHHHcCCCEEEE
Confidence 358999999987542 1 122457899999
Q ss_pred ecccccc
Q 004964 182 DAYNALH 188 (721)
Q Consensus 182 est~~~~ 188 (721)
||+|...
T Consensus 228 E~~~~~~ 234 (299)
T TIGR02651 228 EATFLDE 234 (299)
T ss_pred ECCCCch
Confidence 9998763
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.64 E-value=1.3e-15 Score=163.12 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=116.3
Q ss_pred EEEeecCCCC-----CCcEEEEEEC----CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHh
Q 004964 7 VTPLSGVFNE-----NPLSYLVSID----GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (721)
Q Consensus 7 ~t~lgG~~~~-----g~s~~ll~~~----~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~ 77 (721)
+++||.++.. +.+|++|+.+ +.+||||||... ...+......+.+||+|||||.|+||++|+|.+...
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~---~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~ 77 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCS 77 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccH---HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHH
Confidence 3566544432 7788999875 378999999532 122223334457899999999999999999987642
Q ss_pred c---C--CCccEEechhhHhhhhccchH--hhhc-CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE---
Q 004964 78 L---G--LSAPVFSTEPVYRLGLLTMYD--QYLS-RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK--- 146 (721)
Q Consensus 78 ~---g--~~~~Iy~T~pt~~l~~~~l~d--~~~~-~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~--- 146 (721)
. + ...+||++..+.+..+..+.- .+.. ...++.+..++.+.. ++++|++++.-|...+.+|+|+.
T Consensus 78 ~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~v~~~~~~H~~~~~gy~i~~~~~ 153 (303)
T TIGR02649 78 RSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDD----GLRKVTAYPLEHPLECYGYRIEEHDK 153 (303)
T ss_pred HHhcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEec----CCeEEEEEEccCccceEEEEEeccCC
Confidence 1 1 246899999887755432210 0000 112456666676665 67999999999999999999976
Q ss_pred -----------------------------------------------CCeEEEEEecCCCcCccccCcccccccCCCcEE
Q 004964 147 -----------------------------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179 (721)
Q Consensus 147 -----------------------------------------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~L 179 (721)
.+.+++|+||+..... + .+...++|+|
T Consensus 154 ~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-~-----~~~~~~adlL 227 (303)
T TIGR02649 154 PGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-A-----LDLAKGVDVM 227 (303)
T ss_pred cCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHH-H-----HHHhcCCCEE
Confidence 3568999999987432 1 1224689999
Q ss_pred Eeeccccc
Q 004964 180 ITDAYNAL 187 (721)
Q Consensus 180 I~est~~~ 187 (721)
|+||+|..
T Consensus 228 i~Eat~~~ 235 (303)
T TIGR02649 228 VHEATLDI 235 (303)
T ss_pred EEeccCCh
Confidence 99999865
No 16
>PRK02113 putative hydrolase; Provisional
Probab=99.63 E-value=4.1e-15 Score=154.98 Aligned_cols=150 Identities=23% Similarity=0.223 Sum_probs=106.7
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhc-CCCccEEechhhHhhhhc
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-GLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~-g~~~~Iy~T~pt~~l~~~ 96 (721)
++|++|+.++.+||||||.... . .+. .....++|+|||||.|.||++||+.+.... ....+||++..+.+..+.
T Consensus 35 ~~s~li~~~~~~iLiD~G~g~~--~-~l~--~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 109 (252)
T PRK02113 35 RTSALVETEGARILIDCGPDFR--E-QML--RLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred eeEEEEEECCeEEEEECCchHH--H-HHH--hcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHh
Confidence 4679999999999999995211 1 111 124568999999999999999999875421 236789999988765432
Q ss_pred cchHh-----hh--cCCCeEEecCCCEEEeccccCCeEEEEecCCCc-cCceEEEEEECCeEEEEEecCCCcCccccCcc
Q 004964 97 TMYDQ-----YL--SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 168 (721)
Q Consensus 97 ~l~d~-----~~--~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~ 168 (721)
..... +. ....++.++.++.+.+ ++++|++++.-|. ..+.+|++ ++++|+||+...++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~~~~~~~~--- 178 (252)
T PRK02113 110 RMPYCFVEHSYPGVPNIPLREIEPDRPFLV----NHTEVTPLRVMHGKLPILGYRI----GKMAYITDMLTMPEEEY--- 178 (252)
T ss_pred hCCeeeccCCCCCCcceeeEEcCCCCCEEE----CCeEEEEEEecCCCccEEEEEe----CCEEEccCCCCCCHHHH---
Confidence 21100 10 0123677888888888 6899999999996 45788888 57999999976443221
Q ss_pred cccccCCCcEEEeeccc
Q 004964 169 VLESFVRPAVLITDAYN 185 (721)
Q Consensus 169 ~l~~l~~~d~LI~est~ 185 (721)
+.+.++|+||+|+++
T Consensus 179 --~~~~~~DlLi~e~~~ 193 (252)
T PRK02113 179 --EQLQGIDVLVMNALR 193 (252)
T ss_pred --HHhcCCCEEEEhhhc
Confidence 224578999999976
No 17
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.58 E-value=9e-15 Score=156.14 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=107.6
Q ss_pred CCcEEEEEECC-eEEEEeCCCCCCCCcccCccc-------cCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEech
Q 004964 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPL-------SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (721)
Q Consensus 17 g~s~~ll~~~~-~~ILiDcG~~~~~~~~~l~~l-------~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~ 88 (721)
.++|++|+.++ .+||||||.... . .+... +....++|+|||||.|+||++||+.|.. +...+||++.
T Consensus 38 ~~ss~li~~~g~~~iLiD~G~g~~--~-ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~ 112 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNASPDIR--Q-QIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATP 112 (302)
T ss_pred cccEEEEEcCCCEEEEEECChhHH--H-HHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCH
Confidence 56789998766 469999995321 1 11111 2244589999999999999999999854 4578999999
Q ss_pred hhHhhhhccchHhhh-----cCCCeEEecCCCEEEeccccCCeEEEEecCCC-------------ccCceEEEEE--ECC
Q 004964 89 PVYRLGLLTMYDQYL-----SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-------------LLGGTVWKIT--KDG 148 (721)
Q Consensus 89 pt~~l~~~~l~d~~~-----~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH-------------~~Gs~~~~I~--~~~ 148 (721)
.+.+..+.... ++. ....++.+..++++++. ..++++|++++.-| ...+.+|+|+ .++
T Consensus 113 ~~~~~l~~~~~-~f~~~~~~~~~~~~~i~~~~~~~i~-~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g 190 (302)
T PRK05184 113 AVLEDLSTGFP-IFNVLDHYGGVQRRPIALDGPFAVP-GLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATG 190 (302)
T ss_pred HHHHHHHhcCC-cccccccccceeeEEecCCCceEec-CCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCC
Confidence 98875543210 010 11235567767777772 11379999999865 3568999995 677
Q ss_pred eEEEEEecCCCcCccccCcccccccCCCcEEEeeccc
Q 004964 149 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185 (721)
Q Consensus 149 ~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~ 185 (721)
++++|++|.....+.. ...+..+|+||+|+++
T Consensus 191 ~~~~y~tD~~~~~~~~-----~~~~~gaDlli~da~~ 222 (302)
T PRK05184 191 KRLFYAPGLAEVTDAL-----RARLAGADCVLFDGTL 222 (302)
T ss_pred cEEEEECCCCCCCHHH-----HHHHhcCCEEEEeCCC
Confidence 8999998875443322 2234578999999973
No 18
>PRK00055 ribonuclease Z; Reviewed
Probab=99.57 E-value=4.1e-15 Score=156.23 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=106.9
Q ss_pred eEEEEEeecCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhc
Q 004964 4 SVQVTPLSGVFNE-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (721)
Q Consensus 4 ~m~~t~lgG~~~~-----g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~ 78 (721)
||++++||.++.. +++|++|+.++.+||||||.... ..+......+.++|+|||||.|+||++|||.+...+
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~---~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~ 77 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQ---RQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTR 77 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHH---HHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHh
Confidence 3799999766643 58899999999999999995311 122222334568999999999999999999887532
Q ss_pred -----CCCccEEechhhHhhhhccchHhhhc------CC----CeE-------EecCCCEE-EeccccCCeEEEEecCCC
Q 004964 79 -----GLSAPVFSTEPVYRLGLLTMYDQYLS------RR----SVT-------RLTYSQNY-HLSGKGEGIVVAPHVAGH 135 (721)
Q Consensus 79 -----g~~~~Iy~T~pt~~l~~~~l~d~~~~------~~----~i~-------~v~y~q~~-~l~~~~~gl~it~~~aGH 135 (721)
....+||++..+....+.++. .... .. .+. .++.+..+ .+. .+.++.. .+|
T Consensus 78 ~~~~~~~~l~iy~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~ 151 (270)
T PRK00055 78 SLSGRTEPLTIYGPKGIKEFVETLLR-ASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLK---RGEDVTL--EDG 151 (270)
T ss_pred hhcCCCceEEEECCccHHHHHHHHHH-HhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhh---CCCeEEe--CCC
Confidence 124679999887765443221 0000 00 000 00000000 111 2333332 233
Q ss_pred c--cCceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 136 L--LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 136 ~--~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
. .++.++.++.++.+++|+||+.+.+. ..+.+.++|+||+|++|...
T Consensus 152 ~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~------~~~~~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 152 RIINPADVLGPPRKGRKVAYCGDTRPCEA------LVELAKGADLLVHEATFGDE 200 (270)
T ss_pred cEEeHHHeeccCCCCcEEEEeCCCCCcHH------HHHHhCCCCEEEEeccCCcc
Confidence 3 36778888888899999999987542 11123578999999998753
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.57 E-value=5.8e-14 Score=143.95 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=111.2
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I 84 (721)
|+++.| |.+|++|+.++.+||+||+....... .+.....++|+|||||.|.||++++..+..+ ...++
T Consensus 1 m~i~~l------G~s~~li~~~~~~iLiDP~~~~~~~~----~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v 68 (228)
T PRK00685 1 MKITWL------GHSAFLIETGGKKILIDPFITGNPLA----DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATV 68 (228)
T ss_pred CEEEEE------cceEEEEEECCEEEEECCCCCCCCCC----CCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEE
Confidence 488888 57899999999999999976422111 1211223899999999999999998877653 36889
Q ss_pred EechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccC------------ceEEEEEECCeEEE
Q 004964 85 FSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG------------GTVWKITKDGEDVI 152 (721)
Q Consensus 85 y~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~G------------s~~~~I~~~~~~Il 152 (721)
|++..+....+.. ....+..++.++.+.+ ++++|+++++-|... ..+|.|+.++.+++
T Consensus 69 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~ 138 (228)
T PRK00685 69 IANAELANYLSEK------GVEKTHPMNIGGTVEF----DGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIY 138 (228)
T ss_pred EEeHHHHHHHHhc------CCCceeeccCCCcEEE----CCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEE
Confidence 9987765543211 1114677888898988 689999999988654 48999999999999
Q ss_pred EEecCCCcCccccCcccccccCCCcEEEeec
Q 004964 153 YAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183 (721)
Q Consensus 153 ytGD~~~~~~~~l~~~~l~~l~~~d~LI~es 183 (721)
|+||+.+.++.. .+....++|++++..
T Consensus 139 ~~GDt~~~~~~~----~~~~~~~~D~~~~~~ 165 (228)
T PRK00685 139 HAGDTGLFSDMK----LIGELHKPDVALLPI 165 (228)
T ss_pred EecCccchhHHH----HHHHhhCCCEEEEec
Confidence 999998765321 111124679888754
No 20
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.56 E-value=2.9e-14 Score=141.91 Aligned_cols=146 Identities=21% Similarity=0.328 Sum_probs=103.0
Q ss_pred eEEEEeCCCCCC---CCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC-CCccEEechhhHhhhh--ccch-H
Q 004964 28 FNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-LSAPVFSTEPVYRLGL--LTMY-D 100 (721)
Q Consensus 28 ~~ILiDcG~~~~---~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g-~~~~Iy~T~pt~~l~~--~~l~-d 100 (721)
.+||||||.... +......... ....+|+|||||.|.||+.|++.+..... ...+||++..+.+..+ .... +
T Consensus 1 ~~iLiD~g~~~~~~~~~~~~~~~~~-~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 1 HRILIDCGPGTRSLRLRQQIMQELE-DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp SEEEESE-TTHHHHTHCHHHTCSSS-SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHT
T ss_pred CEEEEeCCCCccccccccccccccc-ccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhccccc
Confidence 379999997432 1101111111 12399999999999999999887776321 1128999999988766 2211 1
Q ss_pred hhh--cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceE----EEEEECCeEEEEEecCCCcCccccCcccccccC
Q 004964 101 QYL--SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV----WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 174 (721)
Q Consensus 101 ~~~--~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~----~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~ 174 (721)
.+. ....+..+..++.+++ ++++|+++++.|..++++ |.|+.++.+|+|+||+++ . +..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~-~--------~~~~~ 146 (194)
T PF12706_consen 80 LYPEEDNFDIIEISPGDEFEI----GDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY-D--------FEELK 146 (194)
T ss_dssp TCCTTSGEEEEEECTTEEEEE----TTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS-C--------HHHHT
T ss_pred ccccccceeEEEeccCceEEe----ceEEEEEEeccccccccccCceEEEecCCcceEEeeccch-h--------hhhhc
Confidence 111 1123667777888888 799999999999999988 999999999999999998 1 22346
Q ss_pred CCcEEEeeccccc
Q 004964 175 RPAVLITDAYNAL 187 (721)
Q Consensus 175 ~~d~LI~est~~~ 187 (721)
++|++|.|+++..
T Consensus 147 ~~D~li~~~~~~~ 159 (194)
T PF12706_consen 147 NIDLLILECGYID 159 (194)
T ss_dssp TBSEEEEEBCBSS
T ss_pred cCCEEEEeCCCcc
Confidence 7999999999874
No 21
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.55 E-value=3.2e-14 Score=151.43 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=110.6
Q ss_pred CCcEEEEEEC-CeEEEEeCCCCCCCCcccCccc----cCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhH
Q 004964 17 NPLSYLVSID-GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVY 91 (721)
Q Consensus 17 g~s~~ll~~~-~~~ILiDcG~~~~~~~~~l~~l----~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~ 91 (721)
.++|++|+.+ +.+||||||.+.......+..+ +.....||+|||||.|.||++||+.|.+ ....+||++..|.
T Consensus 37 ~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~ 114 (302)
T TIGR02108 37 TQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVL 114 (302)
T ss_pred cccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHH
Confidence 6778999764 4689999996322111111112 3446789999999999999999999964 4578999999998
Q ss_pred hhhhccchHh--hh-cCCCeEEecCCCEEEecc-ccCCeEEEEecCC--------C------ccCceEEEEEEC--CeEE
Q 004964 92 RLGLLTMYDQ--YL-SRRSVTRLTYSQNYHLSG-KGEGIVVAPHVAG--------H------LLGGTVWKITKD--GEDV 151 (721)
Q Consensus 92 ~l~~~~l~d~--~~-~~~~i~~v~y~q~~~l~~-~~~gl~it~~~aG--------H------~~Gs~~~~I~~~--~~~I 151 (721)
+..+.. ..+ +. .....+.++.++++.+.. ..++++|++++.- | ...+++|+|+.+ ++++
T Consensus 115 ~~L~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~ 193 (302)
T TIGR02108 115 QDLSDN-PIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRL 193 (302)
T ss_pred HHHHhC-CCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEE
Confidence 765421 100 00 011135667777777631 1136999999987 4 135889999988 8999
Q ss_pred EEEecCCCcCccccCcccccccCCCcEEEeeccc
Q 004964 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 185 (721)
Q Consensus 152 lytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~ 185 (721)
+|++|++...+. .+..+..+|+||+|+++
T Consensus 194 ~y~tD~g~~~~~-----~~~~l~~~d~liida~~ 222 (302)
T TIGR02108 194 FYIPGCAEITDD-----LKARMAGADLVFFDGTL 222 (302)
T ss_pred EEECCCCCCCHH-----HHHHHhCCCEEEEeCCC
Confidence 999999754432 22235678999999983
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.55 E-value=6.3e-14 Score=137.38 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=99.6
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCccc---CccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSL---LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~---l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~ 92 (721)
.+++|++|+.++..||||||+.... .. +..+. ..++++|++||.|.||+||++.+.+. .+++||++..+.+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~--~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE--DLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH--HHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 3689999999999999999964321 12 22232 67999999999999999999999874 4789999988887
Q ss_pred hhhccchH------hhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCCcCc
Q 004964 93 LGLLTMYD------QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162 (721)
Q Consensus 93 l~~~~l~d------~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~ 162 (721)
..+..... .......+..+..++.+.+ ++.++++++ .||++|+++|.+. +.+++|+||+....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~~~~~~~~--~~~vl~~gD~~~~~~ 148 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDL----GGLELEVIHTPGHTPGSIVLYLP--EGKILFTGDLLFSGG 148 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEe----CCceEEEEECCCCCCCcEEEEEC--CCCEEEECCeeeccC
Confidence 65432210 1112234677888999998 455555554 5999999987774 489999999987654
No 23
>PRK02126 ribonuclease Z; Provisional
Probab=99.48 E-value=8.7e-13 Score=142.36 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=114.6
Q ss_pred CCCeEEEEEeecCCCCCCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhc
Q 004964 1 MGTSVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (721)
Q Consensus 1 M~~~m~~t~lgG~~~~g~s~~ll~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~ 78 (721)
|.=+++.+...|.. .-+||+|..+ +..+|||||. ...+. ......|++|||||.|.||++|++.|...+
T Consensus 1 ~~~~~~~~~~~g~~--~dn~~~l~~~~~~~~iLiD~G~-----~~~l~--~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 1 MFRLLEPRLVNGPF--DDPGLYVDFLFERRALLFDLGD-----LHHLP--PRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred CCCcceeEEecCCC--CCcEEEEEECCCCeEEEEcCCC-----HHHHh--hcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 33334445443333 6789998874 6899999995 11111 234578999999999999999999998743
Q ss_pred -C--CCccEEechhhHhhhhccchHh-hh----cCC--CeEEec----------------------------CCCEEEec
Q 004964 79 -G--LSAPVFSTEPVYRLGLLTMYDQ-YL----SRR--SVTRLT----------------------------YSQNYHLS 120 (721)
Q Consensus 79 -g--~~~~Iy~T~pt~~l~~~~l~d~-~~----~~~--~i~~v~----------------------------y~q~~~l~ 120 (721)
+ ...+||++..+..+.+..+.-+ +. .+. .+..+. .+..+.
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLD-- 149 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEe--
Confidence 1 2468999999998766544211 00 000 111111 111122
Q ss_pred cccCCeEEEEecCCCccCceEEEEEE------------------------------------------------------
Q 004964 121 GKGEGIVVAPHVAGHLLGGTVWKITK------------------------------------------------------ 146 (721)
Q Consensus 121 ~~~~gl~it~~~aGH~~Gs~~~~I~~------------------------------------------------------ 146 (721)
.++++|++++.-|...+.+|+|+.
T Consensus 150 --~~~~~V~a~~~~H~vp~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 227 (334)
T PRK02126 150 --EPWFRVRAAFLDHGIPCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVR 227 (334)
T ss_pred --CCCEEEEEEEccCCCceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEe
Confidence 268999999999999999999973
Q ss_pred -------------CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 147 -------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 147 -------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
.+.+++|+||+...++.. .........+|+||+|++|...
T Consensus 228 ~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~--~~l~~~a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 228 PLGELKERVLRIEPGQKIGYVTDIGYTEENL--ARIVELAAGVDLLFIEAVFLDE 280 (334)
T ss_pred cHHHHHHHhccCCCCCEEEEECCCCCCcccH--HHHHHHHcCCCEEEEEcccChH
Confidence 245899999999876421 0011123578999999998764
No 24
>PRK04286 hypothetical protein; Provisional
Probab=99.48 E-value=8.8e-13 Score=140.61 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=105.1
Q ss_pred EEEEEeecCCC-CCCcEEEEEECCeEEEEeCCCCCCCC-----c---------ccCccccCCCCCccEEEecCCchhhhC
Q 004964 5 VQVTPLSGVFN-ENPLSYLVSIDGFNFLIDCGWNDHFD-----P---------SLLQPLSKVASTIDAVLLSHPDTLHLG 69 (721)
Q Consensus 5 m~~t~lgG~~~-~g~s~~ll~~~~~~ILiDcG~~~~~~-----~---------~~l~~l~~~~~~Id~IlLTH~H~DHiG 69 (721)
|+|.+|+.+.. ..++|++|+.++.+||||+|...... + .....+.....+||+|||||.|+||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 47788754322 24699999999999999999542100 0 011223345678999999999999998
Q ss_pred chHHHHHhc---CCCccEEechhhHhhh-hc-c----------chHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cC
Q 004964 70 ALPYAMKQL---GLSAPVFSTEPVYRLG-LL-T----------MYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VA 133 (721)
Q Consensus 70 gLp~L~~~~---g~~~~Iy~T~pt~~l~-~~-~----------l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~a 133 (721)
++..+.... .+..+||++.++.... .. + +............+..++.+.+ ++++|++. +.
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~i----g~~~V~~~~~v 156 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRF----GGTTIEFSPPV 156 (298)
T ss_pred CccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEE----CCEEEEEeccC
Confidence 876542100 1135677766654210 00 0 0011111112355667788888 68999966 67
Q ss_pred CCccC--ceE----EEEEECCeEEEEEecCC-CcCccccCccccccc--CCCcEEEeecc
Q 004964 134 GHLLG--GTV----WKITKDGEDVIYAVDYN-RRKEKHLNGTVLESF--VRPAVLITDAY 184 (721)
Q Consensus 134 GH~~G--s~~----~~I~~~~~~IlytGD~~-~~~~~~l~~~~l~~l--~~~d~LI~est 184 (721)
.|... +.+ ++|+.++.+++|+||+. ...+... +.+ ..+|+||.+++
T Consensus 157 ~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~-----~~l~~~d~dlLi~~~~ 211 (298)
T PRK04286 157 PHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAV-----EFILEKKPDVVIIGGP 211 (298)
T ss_pred CCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHH-----HHHhcCCCCEEEeCCc
Confidence 88532 433 45677889999999998 3222211 112 37899999984
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.42 E-value=1.3e-11 Score=137.08 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=94.8
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l 93 (721)
.+.|||||.. +..+|||||.... ....+..+. ..+.+||+|++||.|.||+||++.+.+.++ .++||++..+..+
T Consensus 31 ~~~NsyLI~~-~~~vLIDtg~~~~-~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~ 107 (394)
T PRK11921 31 SSYNSYLIKD-EKTVLIDTVWQPF-AKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKS 107 (394)
T ss_pred eEEEEEEEeC-CCEEEEeCCCCCc-HHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHH
Confidence 3678999974 5689999996432 122222221 234589999999999999999999987644 6899999988765
Q ss_pred hhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec--CCCccCceEEEEEECCeEEEEEecCC
Q 004964 94 GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 94 ~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~--aGH~~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
... .+.....+..++.++.+++ ++.+++++. ..|++|++.+.+ +..+++||||+-
T Consensus 108 l~~----~~~~~~~~~~v~~g~~l~l----G~~~l~~i~tP~~H~p~~~~~y~--~~~~vLFsgD~f 164 (394)
T PRK11921 108 LKG----HYHQDWNFVVVKTGDRLEI----GSNELIFIEAPMLHWPDSMFTYL--TGDNILFSNDAF 164 (394)
T ss_pred HHH----HhCCCCceEEeCCCCEEee----CCeEEEEEeCCCCCCCCceEEEE--cCCCEEEecCcc
Confidence 431 1222224677899999999 678888874 349999998887 467899999963
No 26
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.41 E-value=1.5e-13 Score=145.64 Aligned_cols=175 Identities=21% Similarity=0.254 Sum_probs=108.6
Q ss_pred EEEEEeecCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 5 VQVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 5 m~~t~lgG~~~-----~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
|++++||-++. ...++++|+.++..+|||||.. ....+......+.+|++|||||.|.||+.|||.|.....
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeG---t~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~ 78 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEG---TQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRS 78 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHh---HHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhh
Confidence 68999876665 2677899999899999999942 222333444455689999999999999999997765332
Q ss_pred C-----CccEEechhhHhhhhccchHhhh--cC---------CC-----------eEEecCCCEEEec-ccc--------
Q 004964 80 L-----SAPVFSTEPVYRLGLLTMYDQYL--SR---------RS-----------VTRLTYSQNYHLS-GKG-------- 123 (721)
Q Consensus 80 ~-----~~~Iy~T~pt~~l~~~~l~d~~~--~~---------~~-----------i~~v~y~q~~~l~-~~~-------- 123 (721)
+ ...||.+....++....+.-... .. .. +..+.|.-..... +..
T Consensus 79 ~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~ 158 (292)
T COG1234 79 FRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGL 158 (292)
T ss_pred ccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCC
Confidence 2 24688886655443332211100 00 00 1111111110000 000
Q ss_pred -CCeEEEEecCCCc----cCceEEEEEE--CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 124 -EGIVVAPHVAGHL----LGGTVWKITK--DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 124 -~gl~it~~~aGH~----~Gs~~~~I~~--~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
++..++++..+|. .-...+.+.. .+.+|+|+||+....... ....++|+||+||++...
T Consensus 159 ~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~------~~a~~aDlLiHEat~~~~ 224 (292)
T COG1234 159 PPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELI------DLAKGADLLIHEATFEDD 224 (292)
T ss_pred CCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHH------HHhcCCCEEEEeccCCch
Confidence 1677888889998 4444444544 347999999999876421 112579999999998763
No 27
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.34 E-value=2.5e-12 Score=125.94 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=103.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccC-ccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLL-QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l-~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.+||+|+.++..||||||+......... ........+|++||+||+|.||+||++.+.++.. ...+++.........
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~ 83 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIR 83 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccc-eeeeecccccccccc
Confidence 67899999999999999998543211111 2234567799999999999999999999998643 333444443333322
Q ss_pred ccchHhhh-----cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCcCccccCcccc
Q 004964 96 LTMYDQYL-----SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 170 (721)
Q Consensus 96 ~~l~d~~~-----~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l 170 (721)
........ ...........+..... +...+. ...+|..++..+.+...+++++|+||+..........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~--- 156 (194)
T PF00753_consen 84 PPDRDSASRRGPAVPPPPIIDEDEDDLEIG---GDRILF-IIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPD--- 156 (194)
T ss_dssp HHHHHHHHHHHHHHESEEEEEETTTEEEEE---TTEEEE-EEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSS---
T ss_pred ccccccccccccccccccceeeeccccccc---cccccc-ceeccccCCcceEEEeCCCcEEEeeeEeccCCccccc---
Confidence 21111110 11112333344444442 233332 3344555555566666899999999998866432211
Q ss_pred cccCCCcEEEeecccccccCC--CcchHHHHHHHHHHHHhcCCeEEEe
Q 004964 171 ESFVRPAVLITDAYNALHNQP--PRQQREMFQDAISKTLRAGGNVLLP 216 (721)
Q Consensus 171 ~~l~~~d~LI~est~~~~~~~--~r~~~e~l~~~I~~~l~~gG~VLIP 216 (721)
.+ +...... .........+.+.+..+....+++|
T Consensus 157 -----~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 192 (194)
T PF00753_consen 157 -----PD-------LPLRGADVRYGSNWEESIEALRRLEALDPEVIIP 192 (194)
T ss_dssp -----TS-------HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEE
T ss_pred -----cc-------cccccccccCcHHHHHHHHHHHHHHCCCCCEEEe
Confidence 11 1111111 1122236677777777777778877
No 28
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.32 E-value=4.5e-11 Score=129.72 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=105.7
Q ss_pred CeEEEEEeecCCCCCCcEEEEEE-CCeEEEEeCCCCCCCC-------------------cccCcc-cc--------CCCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSI-DGFNFLIDCGWNDHFD-------------------PSLLQP-LS--------KVAS 53 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~-~~~~ILiDcG~~~~~~-------------------~~~l~~-l~--------~~~~ 53 (721)
+.++++.| |.++++|+. ++.+||+|. |..... ...+.+ +. ...+
T Consensus 36 ~~~~~~wl------G~a~~li~~~~g~~ILiD~-~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~ 108 (355)
T PRK11709 36 GTFAMWWL------GCTGIWLKTEGGTNVCVDL-WCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIR 108 (355)
T ss_pred CcEEEEEe------cceEEEEEcCCCcEEEEee-cCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCC
Confidence 44777887 688899998 578999994 221100 001111 00 1346
Q ss_pred CccEEEecCCchhhhC--chHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe
Q 004964 54 TIDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH 131 (721)
Q Consensus 54 ~Id~IlLTH~H~DHiG--gLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~ 131 (721)
.||+|||||.|.||+. .+..+.++.+..++++++..+..+.+. .-.....+..+++++.+.+ ++++|+++
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~----~Gvp~~rv~~v~~Ge~i~i----g~v~It~l 180 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG----WGVPKERCIVVKPGDVVKV----KDIKIHAL 180 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh----cCCCcceEEEecCCCcEEE----CCEEEEEE
Confidence 8999999999999994 344554433335678888777554221 1111234789999999999 78999999
Q ss_pred cCCC-----------cc-----------CceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeec
Q 004964 132 VAGH-----------LL-----------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 183 (721)
Q Consensus 132 ~aGH-----------~~-----------Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~es 183 (721)
++-| .. .+++|.|+.++.+|+|+||+.+.+.. . .+..-.++|++++..
T Consensus 181 pa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~--~--~i~~~~~iDvall~i 250 (355)
T PRK11709 181 DSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYF--A--KHGNDHQIDVALGSY 250 (355)
T ss_pred eccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHH--H--HHHhcCCCCEEEecC
Confidence 8844 21 24789999999999999999886421 0 000113589888744
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.24 E-value=2.4e-11 Score=137.55 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=94.5
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l 93 (721)
.+.|||||. ++..+|||+|... +....+..+. ..+.+|++|++||.|.||+|+++.|.++++ .++||++..+..+
T Consensus 33 ~t~NsYLI~-~~~~vLIDtg~~~-~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~ 109 (479)
T PRK05452 33 SSYNSYLIR-EEKNVLIDTVDHK-FSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDS 109 (479)
T ss_pred cEEEEEEEE-CCCEEEEeCCCcc-cHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHH
Confidence 367899998 4678999999432 1122222222 234689999999999999999999987643 6899999998765
Q ss_pred hhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC--CCccCceEEEEEECCeEEEEEecCC
Q 004964 94 GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 94 ~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
..... ......+..++.++.+.+. ++.+++++.+ +|++|+..+++. +.+++||||+-
T Consensus 110 l~~~~---~~~~~~~~~v~~G~~l~lG---~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLFsgD~f 168 (479)
T PRK05452 110 INGHH---HHPEWNFNVVKTGDTLDIG---NGKQLIFVETPMLHWPDSMMTYLT--GDAVLFSNDAF 168 (479)
T ss_pred HHHhh---cCCcCeEEEeCCCCEEecC---CCcEEEEEECCCCCCCCceEEEEc--CCCEEEecccc
Confidence 43110 0011246788999999994 3566766654 599999988874 67899999963
No 30
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.24 E-value=2.7e-11 Score=126.00 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=87.1
Q ss_pred CcEEEEEECC-eEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 18 PLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 18 ~s~~ll~~~~-~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
..+|++..++ ..+|||+|... ..+..+......+++||+||.|.||+||++.+.+.++ ++||++..+. +
T Consensus 10 N~~yli~~~~~~~ilID~g~~~----~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~--~~V~~~~~~~-~--- 79 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE----PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP--APVYGPAEER-I--- 79 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH----HHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC--CeEEeccccc-C---
Confidence 4568887765 79999999521 1222232233468999999999999999999987654 8899987541 0
Q ss_pred cchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 97 ~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
......+..++.+.+ ++.+++++. .||++|+++|.+. ..+++|+||+-..
T Consensus 80 --------~~~~~~v~~g~~~~~----g~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDtl~~ 130 (248)
T TIGR03413 80 --------PGITHPVKDGDTVTL----GGLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLFS 130 (248)
T ss_pred --------CCCcEEeCCCCEEEE----CCEEEEEEECCCCCcccEEEEEC--CCCEEEEcCcccc
Confidence 112356788899988 577777764 6899999998885 4689999998653
No 31
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.22 E-value=6.1e-11 Score=123.76 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=85.6
Q ss_pred cEEEEEECC--eEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 19 LSYLVSIDG--FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 19 s~~ll~~~~--~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
.||+|..++ ..+|||+|.. ...+..+......|++||+||.|.||+||+..|.+.++ .++||++.....
T Consensus 13 y~Yli~d~~~~~~vlIDp~~~----~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~~~---- 83 (258)
T PLN02469 13 YAYLIIDESTKDAAVVDPVDP----EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLDNV---- 83 (258)
T ss_pred EEEEEEeCCCCeEEEECCCCh----HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechhcC----
Confidence 489997653 6899999931 11222333334589999999999999999999988653 589998754210
Q ss_pred cchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCccCceEEEEEEC--CeEEEEEecCCC
Q 004964 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITKD--GEDVIYAVDYNR 159 (721)
Q Consensus 97 ~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~~Gs~~~~I~~~--~~~IlytGD~~~ 159 (721)
....+.++.++.+.+. +++.++++ -+||++|+.+|.+... ...++||||+-.
T Consensus 84 --------~~~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 84 --------KGCTHPVENGDKLSLG---KDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLF 138 (258)
T ss_pred --------CCCCeEeCCCCEEEEC---CceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCccc
Confidence 0113567788888883 34566554 4799999999988642 346999999744
No 32
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.22 E-value=1.2e-10 Score=120.62 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=126.0
Q ss_pred EEECCeEEEEe-CCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHh--cC---CC-ccEEechhhHhhhh
Q 004964 23 VSIDGFNFLID-CGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ--LG---LS-APVFSTEPVYRLGL 95 (721)
Q Consensus 23 l~~~~~~ILiD-cG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~--~g---~~-~~Iy~T~pt~~l~~ 95 (721)
+-...-+||+| .|-.. ...+......++.|||||+|.||+|||+.+.-. +. .+ ..||.++.+..+.+
T Consensus 14 ~~~~~~~ilfD~ag~g~------~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve 87 (277)
T TIGR02650 14 IIYSPEEIIFDAAEEGS------STLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE 87 (277)
T ss_pred EEECchhheehhhcccc------hhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH
Confidence 33456799999 88422 123444566899999999999999999755541 11 12 34999988777655
Q ss_pred ccch--Hhh----hcCCCeEEecCCCEEEeccccCCeEEEEecCCCcc---CceEEEEEE--------------------
Q 004964 96 LTMY--DQY----LSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL---GGTVWKITK-------------------- 146 (721)
Q Consensus 96 ~~l~--d~~----~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~---Gs~~~~I~~-------------------- 146 (721)
.++. ..+ .....+.+++.++.+-+...+..+.+.+++..|.. -|.+|.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l 167 (277)
T TIGR02650 88 ETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLL 167 (277)
T ss_pred HHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHH
Confidence 2211 111 11222455666676666411124899999999985 466666541
Q ss_pred ------------CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHh-cCCe
Q 004964 147 ------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR-AGGN 212 (721)
Q Consensus 147 ------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~-~gG~ 212 (721)
...+|+|+||+..... +...++|+||+||||...... +..-. ...+.+..+-+ +...
T Consensus 168 ~~~gg~~~t~e~~~~~vvysGDT~~~~~--------~~a~~adlLIhEaTf~d~~~~-~~~gH~t~~eaa~~A~~a~vk~ 238 (277)
T TIGR02650 168 KEEGGDDFTREEHHKILLIIGDDLAADD--------EEEEGGEELIHECCFFDDADD-RRKKHAAADDEMEESKKAAGKK 238 (277)
T ss_pred HHhCCccccccccCcEEEEeCCCCCCCh--------HHhcCCCEEEEeccccccccc-ccCCCCCHHHHHHHHHHcCCCE
Confidence 1257999999977642 224689999999999875432 11011 23333333333 3456
Q ss_pred EEEeccCchHHHHHH-HHHHHHHHhcCC-CccEEEEcc
Q 004964 213 VLLPVDSAGRVLELL-LILEDYWAEHSL-NYPIYFLTY 248 (721)
Q Consensus 213 VLIP~~~~GR~qEll-~~L~~~~~~~~l-~~pI~~~s~ 248 (721)
+++-.++.-|-.+++ .++... .+ .+ .+||+++.+
T Consensus 239 LiLtH~Ssry~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 274 (277)
T TIGR02650 239 KIILHHISRRIIRILKSIIKKR-EE-EMDDEEILMDDP 274 (277)
T ss_pred EEEEeecccccHHHHHHHHHHH-Hh-hcCccceeccCC
Confidence 777777766666665 444444 22 22 477776543
No 33
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.21 E-value=1.1e-10 Score=124.98 Aligned_cols=134 Identities=17% Similarity=0.150 Sum_probs=95.1
Q ss_pred CeEEEEEeecCCCCCCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
+.|+++++-... ...||+|..+ +..++||+|... ..+..+.....+|++||+||.|.||+||+..|.+++
T Consensus 74 ~~~~i~~ip~l~--dNy~Yli~d~~t~~~~vVDP~~a~----~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-- 145 (329)
T PLN02398 74 SSLQIELVPCLK--DNYAYLLHDEDTGTVGVVDPSEAV----PVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-- 145 (329)
T ss_pred CCcEEEEEeeeC--ceEEEEEEECCCCEEEEEcCCCHH----HHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc--
Confidence 356676664322 3568999764 467999998421 223334444568999999999999999999998865
Q ss_pred CccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
.++||++........ ..-..+..++.+.+ ++.+++++ -.||++|+.+|.+. +..++|+||+-.
T Consensus 146 ga~V~g~~~~~~~i~----------~~d~~v~dGd~i~l----gg~~l~vi~tPGHT~GhI~~~~~--~~~vLFtGDtLf 209 (329)
T PLN02398 146 GAKVIGSAVDKDRIP----------GIDIVLKDGDKWMF----AGHEVLVMETPGHTRGHISFYFP--GSGAIFTGDTLF 209 (329)
T ss_pred CCEEEEehHHhhhcc----------CCcEEeCCCCEEEE----CCeEEEEEeCCCcCCCCEEEEEC--CCCEEEECCCcC
Confidence 489999876543211 11356778888888 56777665 36999999999774 457999999865
Q ss_pred c
Q 004964 160 R 160 (721)
Q Consensus 160 ~ 160 (721)
.
T Consensus 210 ~ 210 (329)
T PLN02398 210 S 210 (329)
T ss_pred C
Confidence 3
No 34
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.17 E-value=1.6e-10 Score=119.79 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=91.2
Q ss_pred CeEEEEEeecCCCCCCcEEEEEE----CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhc
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSI----DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~----~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~ 78 (721)
+.|-|.-+.. ...+.+||+|.. ++..+|||+|.... ...+..+......|.+||+||.|.||+||++.|.+++
T Consensus 9 ~~m~~~~~~~-~~~~~~~Yll~d~~~~~~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~ 85 (251)
T PLN02962 9 SKLLFRQLFE-KESSTYTYLLADVSHPDKPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKL 85 (251)
T ss_pred CceEEEEeec-CCceeEEEEEEeCCCCCCEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHC
Confidence 3456655522 222678999875 35789999984211 1122333333457899999999999999999998754
Q ss_pred CCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCccCceEEEEEE----CCeEEEE
Q 004964 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITK----DGEDVIY 153 (721)
Q Consensus 79 g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~~Gs~~~~I~~----~~~~Ily 153 (721)
+ .+++|+..... ...-..++.++.+.+ ++++++++ -.||++|+++|.+.. ...+++|
T Consensus 86 ~-~a~v~~~~~~~-------------~~~d~~l~~g~~i~~----g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lf 147 (251)
T PLN02962 86 P-GVKSIISKASG-------------SKADLFVEPGDKIYF----GDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAF 147 (251)
T ss_pred C-CCeEEeccccC-------------CCCCEEeCCCCEEEE----CCEEEEEEECCCCCcCcEEEEeccCCCCCccceEE
Confidence 3 57888864320 011234677888888 57777665 469999999998742 1346999
Q ss_pred EecCCC
Q 004964 154 AVDYNR 159 (721)
Q Consensus 154 tGD~~~ 159 (721)
+||+-.
T Consensus 148 tGD~Lf 153 (251)
T PLN02962 148 TGDALL 153 (251)
T ss_pred ECCeec
Confidence 999754
No 35
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=99.14 E-value=3.4e-10 Score=124.10 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=129.1
Q ss_pred CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe
Q 004964 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH 131 (721)
Q Consensus 52 ~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~ 131 (721)
.....+-|+||+|.||..||.--+. .+++||+.-|+.+....+. .....++.++-+|++.+ .++.++.+
T Consensus 110 ~~~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~---v~~~~i~~l~l~~~~~i----~~~~vt~l 178 (481)
T KOG1361|consen 110 IEGCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS---VTKQSIQALDLNQPLEI----PGIQVTLL 178 (481)
T ss_pred ccccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc---cChhhceeecCCCceee----cceEEEEe
Confidence 3467889999999999988865433 4569999999987655442 23344788999999999 58999999
Q ss_pred cCCCccCceEEEEEECC-eEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccC--CCcchHH-HHHHHHHHHH
Q 004964 132 VAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ--PPRQQRE-MFQDAISKTL 207 (721)
Q Consensus 132 ~aGH~~Gs~~~~I~~~~-~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~--~~r~~~e-~l~~~I~~~l 207 (721)
+|.|++|+++|...... ..+++||||....+..-.++.. ....++.+..|+||..... |++.+.. ...+.|..-.
T Consensus 179 dAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~-~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~ 257 (481)
T KOG1361|consen 179 DANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALT-LEQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHA 257 (481)
T ss_pred ccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHh-cCCccceEEEeecccCCCCCCccHHHHHHHHHHHHHhhh
Confidence 99999999999998754 5999999999987643222211 1256899999999998765 4555554 5555555544
Q ss_pred hcC--CeEEEeccCchHHHHHHHHHHHHHHhcCCCccEEEE
Q 004964 208 RAG--GNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 246 (721)
Q Consensus 208 ~~g--G~VLIP~~~~GR~qEll~~L~~~~~~~~l~~pI~~~ 246 (721)
..+ --++|+++.+|+--=++.+...+ +.+|++.
T Consensus 258 ~~~~~~Li~v~~ysiGkE~l~~eia~~l------~~kI~v~ 292 (481)
T KOG1361|consen 258 SKNDRVLIVVGTYSIGKEKLLLEIARIL------NSKIWVE 292 (481)
T ss_pred hhCCceEEEEEEEecchhHHHHHHHHHh------CCceEEe
Confidence 443 23677999998864445544444 7789865
No 36
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.14 E-value=1.2e-10 Score=121.16 Aligned_cols=127 Identities=13% Similarity=0.239 Sum_probs=87.1
Q ss_pred EEEEeecCCCCCCcEEEEEEC-CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE
Q 004964 6 QVTPLSGVFNENPLSYLVSID-GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (721)
Q Consensus 6 ~~t~lgG~~~~g~s~~ll~~~-~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I 84 (721)
+++++.... ...+|++..+ +..+|||+|... ..+..+.....++++||+||.|.||+||+..|.++++ .++|
T Consensus 2 ~i~~~~~~~--dNy~~li~~~~~~~ilIDpg~~~----~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V 74 (251)
T PRK10241 2 NLNSIPAFD--DNYIWVLNDEAGRCLIVDPGEAE----PVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFP-QIVV 74 (251)
T ss_pred eeEEeeeec--ceEEEEEEcCCCcEEEECCCChH----HHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCC-CCEE
Confidence 455552222 3455777654 578999999421 1223333333467899999999999999999998754 5799
Q ss_pred EechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCC
Q 004964 85 FSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 85 y~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
|++..+.. ....+.++.++.+.+ ++.+++++. .||++|+.+|.. ..++||||+-.
T Consensus 75 ~~~~~~~~------------~~~~~~v~~g~~i~i----g~~~~~vi~tPGHT~ghi~~~~----~~~lFtGDtlf 130 (251)
T PRK10241 75 YGPQETQD------------KGTTQVVKDGETAFV----LGHEFSVFATPGHTLGHICYFS----KPYLFCGDTLF 130 (251)
T ss_pred Eecccccc------------cCCceEeCCCCEEEe----CCcEEEEEEcCCCCccceeeec----CCcEEEcCeec
Confidence 98754321 112356777888888 566777654 799999999964 25899999754
No 37
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.08 E-value=5.8e-10 Score=114.66 Aligned_cols=139 Identities=24% Similarity=0.300 Sum_probs=85.2
Q ss_pred CCcEEEEEECC-eEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~-~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
..+++++..++ ..+|||||............+.....+|++|++||.|.||+||+..+.+... ..++|..........
T Consensus 24 ~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~~~ 102 (252)
T COG0491 24 GNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLLLR 102 (252)
T ss_pred cccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhhhh
Confidence 44556665555 7999999975431011111222222289999999999999999999987533 367755554433222
Q ss_pred ccch--------Hhhhc-CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCcC
Q 004964 96 LTMY--------DQYLS-RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161 (721)
Q Consensus 96 ~~l~--------d~~~~-~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~ 161 (721)
.... ..... ......+..++.+.+.+ .++++...+ ||++|+++|.+...+ ++|+||.-...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~tp-GHT~g~~~~~~~~~~--~l~~gD~~~~~ 172 (252)
T COG0491 103 EEILRKAGVTAEAYAAPGASPLRALEDGDELDLGG--LELEVLHTP-GHTPGHIVFLLEDGG--VLFTGDTLFAG 172 (252)
T ss_pred cccccccccccccCCCCccccceecCCCCEEEecC--eEEEEEECC-CCCCCeEEEEECCcc--EEEecceeccC
Confidence 1110 00000 11234455677777731 236666665 999999999997544 99999987654
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.07 E-value=7e-10 Score=107.80 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=82.1
Q ss_pred EEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEE
Q 004964 6 QVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF 85 (721)
Q Consensus 6 ~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy 85 (721)
+||.| |.+|++|+.++.+||+|+.... ........++|+|++||.|.||+.. +.+.. .
T Consensus 1 ~It~l------gha~~~ie~~g~~iliDP~~~~-------~~~~~~~~~~D~IlisH~H~DH~~~-~~l~~-----~--- 58 (163)
T PF13483_consen 1 KITWL------GHASFLIETGGKRILIDPWFSS-------VGYAPPPPKADAILISHSHPDHFDP-ETLKR-----L--- 58 (163)
T ss_dssp EEEEE------ETTEEEEEETTEEEEES--TTT---------T-TSS-B-SEEEESSSSTTT-CC-CCCCC-----H---
T ss_pred CEEEE------EeeEEEEEECCEEEEECCCCCc-------cCcccccCCCCEEEECCCccccCCh-hHhhh-----c---
Confidence 46777 7899999999999999998421 1111223689999999999999864 11110 0
Q ss_pred echhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCc-------cCceEEEEEECCeEEEEEecCC
Q 004964 86 STEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-------LGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 86 ~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-------~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
...+..+..++.+++ ++++|+.+++-|. ...++|.|+.++.+|+++||..
T Consensus 59 -------------------~~~~~vv~~~~~~~~----~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~ 115 (163)
T PF13483_consen 59 -------------------DRDIHVVAPGGEYRF----GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTG 115 (163)
T ss_dssp -------------------HTSSEEE-TTEEEEC----TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--
T ss_pred -------------------ccccEEEccceEEEE----eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCc
Confidence 123566777888888 6999999887764 3378999999999999999998
Q ss_pred CcCccccCcccccccCCCcEEEeeccc
Q 004964 159 RRKEKHLNGTVLESFVRPAVLITDAYN 185 (721)
Q Consensus 159 ~~~~~~l~~~~l~~l~~~d~LI~est~ 185 (721)
...+ ...+..+.++|++++-...
T Consensus 116 ~~~~----~~~~~~~~~vDvl~~p~~g 138 (163)
T PF13483_consen 116 FPPD----DEQLKQLGKVDVLFLPVGG 138 (163)
T ss_dssp S-------HHHHHHH-S-SEEEEE--T
T ss_pred cCCC----HHHHhcccCCCEEEecCCC
Confidence 7432 1223345689999987653
No 39
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.05 E-value=1.3e-10 Score=86.37 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=37.3
Q ss_pred EEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecCCHH
Q 004964 515 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 556 (721)
Q Consensus 515 ~v~v~c~v~~id~~g~~D~rsl~~ii~~l~PrkliLv~g~~~ 556 (721)
.++|+|+|..++||||+|+++|..++..++|+++|||||+++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 689999999999999999999999999999999999999864
No 40
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.93 E-value=1.1e-08 Score=107.50 Aligned_cols=198 Identities=20% Similarity=0.279 Sum_probs=125.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc-CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
++.+.+++.++.++|+|+|...+ ....+..|. ..+.+||.+++||+|.||+||++.+.+++.. ..+|+..+...-..
T Consensus 53 qg~a~li~~~~~~~l~dtg~~~~-~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~ 130 (293)
T COG2333 53 QGLATLIRSEGKTILYDTGNSMG-QDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTST 130 (293)
T ss_pred CCeEEEEeeCCceEEeecCcccC-ceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccch
Confidence 45678999999999999997422 112223332 2356899999999999999999999985442 34554433332111
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCc-----cCceEEEEEECCeEEEEEecCCCcCccccCccc
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHL-----LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~-----~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~ 169 (721)
..+ ......+...+-++.+.+ +++.++++ |.+.. --||..+++.++.++++|||.....+..+.. .
T Consensus 131 ~~~---~~~~~~~~~~~~G~~~~~----~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~E~~l~~-~ 202 (293)
T COG2333 131 FVL---RDAGIPVRSCKAGDSWQW----GGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKGEKLLKK-Y 202 (293)
T ss_pred hhh---hhcCCceeccccCceEEE----CCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchhHHHHHh-h
Confidence 101 112233667777888888 68888876 44343 2489999999999999999999877644332 2
Q ss_pred ccccCCCcEEEeecccccccCCCcchHHHHHHHHHHHHhcCCeEEEeccCchH-------HHHHHHHHHHHHHhcCCCcc
Q 004964 170 LESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR-------VLELLLILEDYWAEHSLNYP 242 (721)
Q Consensus 170 l~~l~~~d~LI~est~~~~~~~~r~~~e~l~~~I~~~l~~gG~VLIP~~~~GR-------~qEll~~L~~~~~~~~l~~p 242 (721)
.+. .++|+|........+.. ...|++.++-- + +..++|| -+|++..|.+. +++
T Consensus 203 ~~~-l~~dVLkV~HHGS~tSs-----s~~Fl~~v~Pk------~--AliS~G~~N~yghPh~~Vl~rl~~~------~~~ 262 (293)
T COG2333 203 GPD-LRADVLKVGHHGSKTSS-----SLAFLEAVKPK------V--ALISSGRNNRYGHPHQEVLERLQKR------GIK 262 (293)
T ss_pred CCC-ccceEEEeccCCccccC-----cHHHHHhcCCc------E--EEEEeeccCCCCCCcHHHHHHHHhc------CCe
Confidence 222 45778776543333211 12566655321 2 4445566 57777777766 566
Q ss_pred EE
Q 004964 243 IY 244 (721)
Q Consensus 243 I~ 244 (721)
+|
T Consensus 263 v~ 264 (293)
T COG2333 263 VY 264 (293)
T ss_pred EE
Confidence 65
No 41
>PRK11539 ComEC family competence protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=122.56 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=102.7
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCC-CCc--cc-CccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDH-FDP--SL-LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~-~~~--~~-l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
.++++|--+ .+.|++++.++..+|+|||...+ .+. .. +..+....-++|+|++||.|.||+||++.+.++++
T Consensus 501 ~~v~~lDVG---qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~- 576 (755)
T PRK11539 501 WRVDMLDVG---HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP- 576 (755)
T ss_pred EEEEEEEcc---CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCC-
Confidence 567777333 35688899999999999995321 111 11 12222222269999999999999999999998654
Q ss_pred CccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCc-----cCceEEEEEECCeEEEEE
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHL-----LGGTVWKITKDGEDVIYA 154 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~-----~Gs~~~~I~~~~~~Ilyt 154 (721)
..+||.+.... ...+...++.+.. ++++++.+ |.+|. .+||.++++.++.++++|
T Consensus 577 ~~~i~~~~~~~---------------~~~~~~~g~~~~~----~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~Llt 637 (755)
T PRK11539 577 MAWIRSPLNWA---------------NHLPCVRGEQWQW----QGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLT 637 (755)
T ss_pred cceeeccCccc---------------CcccccCCCeEeE----CCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEE
Confidence 46777653111 0123455677777 67888876 44443 468999999999999999
Q ss_pred ecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 155 VDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 155 GD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
||+....++.+-... ....++|+|..-..
T Consensus 638 GDi~~~~E~~Ll~~~-~~~l~~dvL~vpHH 666 (755)
T PRK11539 638 GDLEAQAEQKLLSRY-WQQLAATLLQVPHH 666 (755)
T ss_pred eCCChHHHHHHHhcC-ccCcCCCEEEeCCC
Confidence 999887654332110 11236787776543
No 42
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.88 E-value=1.6e-09 Score=109.60 Aligned_cols=75 Identities=29% Similarity=0.403 Sum_probs=61.8
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHh
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~ 92 (721)
+-++||+.++.+||+|+|++...-..+...++..+.+||+|+|||.|+||+|||+++.+......+||+++....
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 567899999999999999765433345566788889999999999999999999999875444789999987654
No 43
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.88 E-value=2.1e-08 Score=118.47 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=103.5
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCC-CCc--c-cCccccC-CCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDH-FDP--S-LLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~-~~~--~-~l~~l~~-~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
.+++++-=+ .+.|++|+.++..+|+|||.... .+. . .+..+.. ... +|++++||.|.||+||++.+.++++
T Consensus 440 ~~v~~lDVG---qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 440 WQVDMLDVG---QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred EEEEEEecC---CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCC
Confidence 466666222 35689999999999999995321 111 0 1122222 234 9999999999999999999998644
Q ss_pred CCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCC------ccCceEEEEEECCeEEEE
Q 004964 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGH------LLGGTVWKITKDGEDVIY 153 (721)
Q Consensus 80 ~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH------~~Gs~~~~I~~~~~~Ily 153 (721)
..++|.+.... ........+..++.+++ ++++++++.... --.|+.++++.++.++++
T Consensus 516 -v~~i~~~~~~~-----------~~~~~~~~~~~G~~~~~----~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~ 579 (662)
T TIGR00361 516 -VKRLVIPKGFV-----------EEGVAIEECKRGDVWQW----QGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLL 579 (662)
T ss_pred -ccEEEeccchh-----------hCCCceEecCCCCEEeE----CCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEE
Confidence 34566543210 01122456777888888 688888875432 235789999999999999
Q ss_pred EecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 154 AVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 154 tGD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
|||.....+..+... . ...+.|+|.....
T Consensus 580 tGD~~~~~E~~l~~~-~-~~l~~dvLk~~HH 608 (662)
T TIGR00361 580 TGDLEAEGEQEVMRV-F-PNIKADVLQVGHH 608 (662)
T ss_pred ecCCCHHHHHHHHhc-c-cCcCccEEEeCCC
Confidence 999988765433211 1 1246777776443
No 44
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=107.70 Aligned_cols=124 Identities=18% Similarity=0.118 Sum_probs=72.2
Q ss_pred CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhcc-----chHhhhcCCCeEEecCCCEEEeccccCCe
Q 004964 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLT-----MYDQYLSRRSVTRLTYSQNYHLSGKGEGI 126 (721)
Q Consensus 52 ~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~-----l~d~~~~~~~i~~v~y~q~~~l~~~~~gl 126 (721)
+..+|+||+||.|.||+.|++.|.+. +..++|++..+....... +.+.... +....+...+ .++
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~ 128 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRRA--YTLPIYVNPGTLRASTSDRLLGGFPYLFRH-----PFPPFSLPAI----GGL 128 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHHH--hcCCcccccceecccchhhhhccchhhhcC-----CCCccccccc----cce
Confidence 46899999999999999999999974 356777776665433221 1111110 1111111111 222
Q ss_pred EEEEecCC------------------CccCceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 127 VVAPHVAG------------------HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 127 ~it~~~aG------------------H~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
.+++.+.. |.....+|.++...+.++|++|+.+.++.+- ..+......++++.++++...
T Consensus 129 ~~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d--~~l~~~~~~~~~~~~~~~~~~ 206 (269)
T COG1235 129 EVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHD--VELLDNGLYPLDIKDRILPDP 206 (269)
T ss_pred eeecCCCCCccccCCCcccccCcccccccccceeeeeeeeccEEEccccccCcchhH--HHHhcCCccceeeeecccccc
Confidence 22222211 2334556666666688999999998776543 122222345677788877664
No 45
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.84 E-value=8.2e-09 Score=111.14 Aligned_cols=132 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHh
Q 004964 15 NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (721)
Q Consensus 15 ~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~ 92 (721)
+.+.|+|||. ++..+|||++-.. +....+..+. ..+.+||.|+++|..+||+|+++.+.+..+ +++|+||.+...
T Consensus 33 GttyNSYLI~-~~k~aLID~~~~~-~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~ 109 (388)
T COG0426 33 GTTYNSYLIV-GDKTALIDTVGEK-FFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAAR 109 (388)
T ss_pred CceeeeEEEe-CCcEEEECCCCcc-hHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHH
Confidence 3478899999 8999999998532 2222333332 346689999999999999999999998655 899999999888
Q ss_pred hhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 93 LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 93 l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
+.+.+..+ ...+..++.++.+++ +|-+++++ |.-|.||+...+. ...+|+||+|+.-
T Consensus 110 ~L~~~~~~----~~~~~ivk~Gd~ldl----Gg~tL~Fi~ap~LHWPd~m~TYd--~~~kILFS~D~fG 168 (388)
T COG0426 110 FLKGFYHD----PEWFKIVKTGDTLDL----GGHTLKFIPAPFLHWPDTMFTYD--PEDKILFSCDAFG 168 (388)
T ss_pred HHHHhcCC----ccceeecCCCCEecc----CCcEEEEEeCCCCCCCCceeEee--cCCcEEEcccccc
Confidence 77654432 222889999999999 46666655 5689999865544 4678999999764
No 46
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.82 E-value=5.9e-08 Score=101.61 Aligned_cols=163 Identities=20% Similarity=0.131 Sum_probs=104.8
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCc--cccCCCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQ--PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 2 ~~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~--~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
...|++|.| |.+|++|+.++.+||+|+.+.......... ......+.+|+|+|||.|.||++.-.......+
T Consensus 4 ~~~m~itwl------Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~ 77 (258)
T COG2220 4 AEDMKITWL------GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN 77 (258)
T ss_pred CcCceEEEe------cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC
Confidence 356899999 799999999999999999986543221110 112345689999999999999975443332212
Q ss_pred CCccEEechhhH-hhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCc-----c--------CceEEEEE
Q 004964 80 LSAPVFSTEPVY-RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-----L--------GGTVWKIT 145 (721)
Q Consensus 80 ~~~~Iy~T~pt~-~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-----~--------Gs~~~~I~ 145 (721)
..+++..+... .+.. . .-.....+..+.++..+.+ +++++++.++-|. + +.++|.|.
T Consensus 78 -~~~~~~~p~~~~~~~~---~-~g~~~~~~~~~~~~~~~~~----~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~ 148 (258)
T COG2220 78 -KAPVVVVPLGAGDLLI---R-DGVEAERVHELGWGDVIEL----GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIE 148 (258)
T ss_pred -CCcEEEeHHHHHHHHH---h-cCCCcceEEeecCCceEEe----cCcEEEEEEeecccccccCCCCccccCCceEEEEE
Confidence 35655555443 2110 0 0011223777888999988 5777765554442 2 25789999
Q ss_pred ECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 146 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 146 ~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
.++.+++++||+.+ . ..... .....+|+++...-
T Consensus 149 ~~g~~iyh~GDt~~-~--~~~~~--~~~~~~DvallPig 182 (258)
T COG2220 149 TPGGRVYHAGDTGY-L--FLIIE--ELDGPVDVALLPIG 182 (258)
T ss_pred eCCceEEeccCccH-H--HHhhh--hhcCCccEEEeccC
Confidence 99999999999987 1 11111 11234688877653
No 47
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=103.55 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=90.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcc-cc---CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LS---KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~-l~---~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~ 92 (721)
+..+|||..+..+++.|.|-.. .++.+.+ +. .....+.+||.||.|+||+||+..+.+...+++.+|...+...
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vDP~--~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r~ 89 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVDPA--EPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDRI 89 (265)
T ss_pred CceEEEEecccceeeeeeecCc--chHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhcC
Confidence 5778999887778877777311 2222221 12 2567899999999999999999999986445677887641110
Q ss_pred hhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEE-ECCeEEEEEecCCCc
Q 004964 93 LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKIT-KDGEDVIYAVDYNRR 160 (721)
Q Consensus 93 l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~-~~~~~IlytGD~~~~ 160 (721)
. ..-..++.++.+.+ +|++|+++. +||+-|+..|++. ..+.+.+||||.-..
T Consensus 90 -~-----------~i~~~~~~~e~~~~----~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~ 143 (265)
T KOG0813|consen 90 -P-----------GITRGLKDGETVTV----GGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFG 143 (265)
T ss_pred -c-----------cccccCCCCcEEEE----CCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceee
Confidence 0 01234778899999 699998864 7999999999997 467889999996543
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.63 E-value=1.1e-08 Score=115.79 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=103.3
Q ss_pred EEEEEeecCCCC-----CCcEEEEEECCeE-EEEeCCCCCCCCc--cc-CccccCCCCCccEEEecCCchhhhCchHHHH
Q 004964 5 VQVTPLSGVFNE-----NPLSYLVSIDGFN-FLIDCGWNDHFDP--SL-LQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (721)
Q Consensus 5 m~~t~lgG~~~~-----g~s~~ll~~~~~~-ILiDcG~~~~~~~--~~-l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~ 75 (721)
+.+.+||-+... .-++++++++... ||+|||-..-... .+ .........++.+|+|||.|.||.-|++-+.
T Consensus 443 ~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL 522 (746)
T KOG2121|consen 443 PEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVL 522 (746)
T ss_pred cEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHH
Confidence 577777433322 4567999997655 9999995321100 00 0112223568899999999999999999777
Q ss_pred HhcC------CCccEEechhhH--hhhhccc------hHhhhcCC-C---eEEecCC-C----EEEeccccCCeEEEEec
Q 004964 76 KQLG------LSAPVFSTEPVY--RLGLLTM------YDQYLSRR-S---VTRLTYS-Q----NYHLSGKGEGIVVAPHV 132 (721)
Q Consensus 76 ~~~g------~~~~Iy~T~pt~--~l~~~~l------~d~~~~~~-~---i~~v~y~-q----~~~l~~~~~gl~it~~~ 132 (721)
+.+. -.-|++...|-. +..+... .+.+.... . +...... - .-.+-...+...|...+
T Consensus 523 ~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~ 602 (746)
T KOG2121|consen 523 QARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCP 602 (746)
T ss_pred HHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecC
Confidence 6321 123555554432 2111110 00000000 0 1000000 0 00001123677888899
Q ss_pred CCCccCceEEEEEEC-CeEEEEEecCCCcCccccCcccccccCCCcEEEeeccccc
Q 004964 133 AGHLLGGTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187 (721)
Q Consensus 133 aGH~~Gs~~~~I~~~-~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 187 (721)
+-|++-+++..|... +.+|+|+||+....+. ++ .-.++|+||.|||+-+
T Consensus 603 viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~-v~-----~g~datlLIHEAT~ED 652 (746)
T KOG2121|consen 603 VIHCPQSYGCSITHGSGWKIVYSGDTRPCEDL-VK-----AGKDATLLIHEATLED 652 (746)
T ss_pred cEecChhhceeEecccceEEEEcCCCCCchhH-hh-----hccCCceEEeehhhch
Confidence 999999999999874 4799999999885532 11 1246899999999766
No 49
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.45 E-value=2.4e-06 Score=85.68 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=120.2
Q ss_pred EEEEEeecCCCC--CCcEEEEEECCeEEEEeCCCCCCCCcccCcc--------------ccCCCCCccEEEecCCchhhh
Q 004964 5 VQVTPLSGVFNE--NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP--------------LSKVASTIDAVLLSHPDTLHL 68 (721)
Q Consensus 5 m~~t~lgG~~~~--g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~--------------l~~~~~~Id~IlLTH~H~DHi 68 (721)
|+++|+ +..+- -.-|.+|++.+.+||||+|..-....-.+.| +.....+.|.|.|||.|.||-
T Consensus 1 MkV~Pl-a~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHh 79 (304)
T COG2248 1 MKVIPL-ASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHH 79 (304)
T ss_pred Cceeec-cccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccC
Confidence 588888 34333 4567899999999999999864322112222 122356789999999999997
Q ss_pred Cc-hHHHHHhcC------C-CccEEechhhHhhhhccc---hHhhhcC---CCeEEecCCCEEEeccccCCeEEEEec-C
Q 004964 69 GA-LPYAMKQLG------L-SAPVFSTEPVYRLGLLTM---YDQYLSR---RSVTRLTYSQNYHLSGKGEGIVVAPHV-A 133 (721)
Q Consensus 69 Gg-Lp~L~~~~g------~-~~~Iy~T~pt~~l~~~~l---~d~~~~~---~~i~~v~y~q~~~l~~~~~gl~it~~~-a 133 (721)
-- .+-++...+ + .-.+.+-.||..+-+... +.+..+. ..-.....++++.+ ++.+|.+-+ .
T Consensus 80 tPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~f----G~t~IefS~pv 155 (304)
T COG2248 80 TPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEF----GGTVIEFSPPV 155 (304)
T ss_pred CccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEe----CCEEEEecCCC
Confidence 43 111111100 0 112334445443321110 0011111 11223445777888 688888753 4
Q ss_pred CCccC-c-----eEEEEEECCeEEEEEecCCC-cCccccCcccccccCCCcEEEeec--ccccccCCCcchHHHHHHHHH
Q 004964 134 GHLLG-G-----TVWKITKDGEDVIYAVDYNR-RKEKHLNGTVLESFVRPAVLITDA--YNALHNQPPRQQREMFQDAIS 204 (721)
Q Consensus 134 GH~~G-s-----~~~~I~~~~~~IlytGD~~~-~~~~~l~~~~l~~l~~~d~LI~es--t~~~~~~~~r~~~e~l~~~I~ 204 (721)
-|-.. + .++.|..++.+|+|+.|..- ..+..+. .+- -.+|+++|++. ||...-.-..+..|.=+..++
T Consensus 156 pHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~--~i~-e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~ 232 (304)
T COG2248 156 PHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALE--FIL-EKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLE 232 (304)
T ss_pred CCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHH--HHH-hcCCCEEEecCCchhHhhhhcChHHHHHHHHHHH
Confidence 56542 2 35566778899999999873 2222221 110 14799999986 433322112233444455666
Q ss_pred HHHhcCCeEEE-eccCc--hHHHHHHHHHHHHHH
Q 004964 205 KTLRAGGNVLL-PVDSA--GRVLELLLILEDYWA 235 (721)
Q Consensus 205 ~~l~~gG~VLI-P~~~~--GR~qEll~~L~~~~~ 235 (721)
+.+.+.+..|| -...+ .+--|.+.-|...-.
T Consensus 233 ~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~ 266 (304)
T COG2248 233 RIIEETNATLVIDHHLLRDKNYREFLEELFERAE 266 (304)
T ss_pred HHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHh
Confidence 66766644444 33332 444566665655543
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.44 E-value=1.5e-05 Score=85.56 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=107.2
Q ss_pred EEEEeecCCCC---CCcEEEEEEC--CeEEEEeCCCCCCC----------CcccCcccc--------------CCCCCcc
Q 004964 6 QVTPLSGVFNE---NPLSYLVSID--GFNFLIDCGWNDHF----------DPSLLQPLS--------------KVASTID 56 (721)
Q Consensus 6 ~~t~lgG~~~~---g~s~~ll~~~--~~~ILiDcG~~~~~----------~~~~l~~l~--------------~~~~~Id 56 (721)
.+.+||-+++. ..++||++.. +..+-+|+|..... ........+ .....|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 45666544433 6778999875 56899999963211 000000000 0124789
Q ss_pred EEEecCCchhhhCchHHHHHhcC----CCccEEechhhHhhhhccch-Hh-hhcC---C--------CeEEecCCCEEEe
Q 004964 57 AVLLSHPDTLHLGALPYAMKQLG----LSAPVFSTEPVYRLGLLTMY-DQ-YLSR---R--------SVTRLTYSQNYHL 119 (721)
Q Consensus 57 ~IlLTH~H~DHiGgLp~L~~~~g----~~~~Iy~T~pt~~l~~~~l~-d~-~~~~---~--------~i~~v~y~q~~~l 119 (721)
+.||||+|+||+.||-.-..... .+-+||+.+.|.+..+..+. +. |.+- . ....+++++...+
T Consensus 82 ~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPL 161 (335)
T ss_pred eEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeec
Confidence 99999999999999854322211 25679999999987663221 11 1110 0 1344455544433
Q ss_pred ccc---------cCCeEEEEecCCCccC------ceEEEEEECC--eEEEEEecCCCcCccccCcc-----ccc---ccC
Q 004964 120 SGK---------GEGIVVAPHVAGHLLG------GTVWKITKDG--EDVIYAVDYNRRKEKHLNGT-----VLE---SFV 174 (721)
Q Consensus 120 ~~~---------~~gl~it~~~aGH~~G------s~~~~I~~~~--~~IlytGD~~~~~~~~l~~~-----~l~---~l~ 174 (721)
... ..+..+++++..|..+ |++|.|+... +.|+|.||+....-...+-. .+. ...
T Consensus 162 ~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~ 241 (335)
T PF02112_consen 162 NNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASG 241 (335)
T ss_pred cccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhcccc
Confidence 200 0235677799888654 7999999864 89999999987542211100 000 113
Q ss_pred CCcEEEeecccccc
Q 004964 175 RPAVLITDAYNALH 188 (721)
Q Consensus 175 ~~d~LI~est~~~~ 188 (721)
+...+++||.|...
T Consensus 242 ~LkaI~IEcS~~~~ 255 (335)
T PF02112_consen 242 KLKAIFIECSYPNS 255 (335)
T ss_pred ccCEEEEEeCCCCC
Confidence 45688999998863
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.24 E-value=0.0009 Score=64.59 Aligned_cols=126 Identities=17% Similarity=0.048 Sum_probs=73.7
Q ss_pred EeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEech
Q 004964 9 PLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (721)
Q Consensus 9 ~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~ 88 (721)
.+.-..+.+-+|+++..++.+||||+--....+...+. ....+++|+|||. ||+-+...+.++++ ++||.+.
T Consensus 14 ~fn~~~n~dfng~~~~~p~GnilIDP~~ls~~~~~~l~----a~ggv~~IvLTn~--dHvR~A~~ya~~~~--a~i~~p~ 85 (199)
T PF14597_consen 14 WFNEARNLDFNGHAWRRPEGNILIDPPPLSAHDWKHLD----ALGGVAWIVLTNR--DHVRAAEDYAEQTG--AKIYGPA 85 (199)
T ss_dssp EEETTTTEEEEEEEE--TT--EEES-----HHHHHHHH----HTT--SEEE-SSG--GG-TTHHHHHHHS----EEEEEG
T ss_pred hcChhhccCceeEEEEcCCCCEEecCccccHHHHHHHH----hcCCceEEEEeCC--hhHhHHHHHHHHhC--CeeeccH
Confidence 34444555778899999999999999742221111122 2358999999985 69999988888754 8999988
Q ss_pred hhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 89 PVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
..+...... . -+.+..++ .+- +|+++...+-.|++|...++++ ++++++||.-.
T Consensus 86 ~d~~~~p~~-~--------D~~l~dge--~i~---~g~~vi~l~G~ktpGE~ALlle---d~vLi~GDl~~ 139 (199)
T PF14597_consen 86 ADAAQFPLA-C--------DRWLADGE--EIV---PGLWVIHLPGSKTPGELALLLE---DRVLITGDLLR 139 (199)
T ss_dssp GGCCC-SS-----------SEEE-TT---BSS---TTEEEEEE-SSSSTTEEEEEET---TTEEEESSSEE
T ss_pred HHHhhCCCC-C--------ccccccCC--Ccc---CceEEEEcCCCCCCceeEEEec---cceEEecceee
Confidence 776432211 1 13444445 333 7999998876699999999995 36999999644
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.08 E-value=0.0034 Score=63.32 Aligned_cols=140 Identities=18% Similarity=0.241 Sum_probs=88.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCC-----CCcccCcc---ccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEech
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDH-----FDPSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~-----~~~~~l~~---l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~ 88 (721)
|.+|.++..+|.++|-|+=|... +.+..+.+ ....++++|.+++||.|+||.-+-....- .+...+++.-+
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~-~~~~~~~wfvp 165 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKI-TDRNPQIWFVP 165 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccchHHHHhh-hccCccceeeh
Confidence 88999999999999999877432 12222222 12457899999999999999987665442 23344443221
Q ss_pred hhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCc----------eEEEEEECCeEEEEEecCC
Q 004964 89 PVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG----------TVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs----------~~~~I~~~~~~IlytGD~~ 158 (721)
.-... .+.. ..-..+..+.+.+..++....+-++|.+.||-|.-+- ++|.+...+.+++|+||++
T Consensus 166 ~g~k~--~m~~---~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTG 240 (343)
T KOG3798|consen 166 LGMKK--WMEG---DGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTG 240 (343)
T ss_pred hhhhh--eecC---CCCCceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEecCCCC
Confidence 11110 0000 0111244555555555543345688888999997542 5677777778999999999
Q ss_pred CcCc
Q 004964 159 RRKE 162 (721)
Q Consensus 159 ~~~~ 162 (721)
+.+.
T Consensus 241 yc~~ 244 (343)
T KOG3798|consen 241 YCDG 244 (343)
T ss_pred cccH
Confidence 9874
No 53
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.78 E-value=0.0025 Score=60.86 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=72.4
Q ss_pred cEEEEEE--CCeEEEEeCCCCCC-CCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCcc-EEechhhHhhh
Q 004964 19 LSYLVSI--DGFNFLIDCGWNDH-FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP-VFSTEPVYRLG 94 (721)
Q Consensus 19 s~~ll~~--~~~~ILiDcG~~~~-~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~-Iy~T~pt~~l~ 94 (721)
-.|||-. ++..++||+-...- .|...++.++ -++-.-+-||.|.||+-|-..|...++ .++ |.+...-
T Consensus 22 ytYll~d~~~~~AviIDPV~et~~RD~qlikdLg---l~LiYa~NTH~HADHiTGtg~Lkt~~p-g~kSVis~~SG---- 93 (237)
T KOG0814|consen 22 YTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLG---LDLIYALNTHVHADHITGTGLLKTLLP-GCKSVISSASG---- 93 (237)
T ss_pred EEEEeeeCCCCceEEecchhhcccchHHHHHhcC---ceeeeeecceeecccccccchHHHhcc-cHHHHhhhccc----
Confidence 3477765 35689999986432 1222333333 345567889999999998887765332 122 1111100
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe-cCCCccCceEEEEEECCeEEEEEecC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITKDGEDVIYAVDY 157 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~~Gs~~~~I~~~~~~IlytGD~ 157 (721)
.+.-.-++.++.+.+ +++.+... ..||+.|+.-|.+. ..+.+||||.
T Consensus 94 ----------akAD~~l~~Gd~i~~----G~~~le~ratPGHT~GC~TyV~~--d~~~aFTGDa 141 (237)
T KOG0814|consen 94 ----------AKADLHLEDGDIIEI----GGLKLEVRATPGHTNGCVTYVEH--DLRMAFTGDA 141 (237)
T ss_pred ----------cccccccCCCCEEEE----ccEEEEEecCCCCCCceEEEEec--Ccceeeecce
Confidence 011234677888988 68877765 47999998888774 5668999985
No 54
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=96.68 E-value=0.0027 Score=64.75 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=70.8
Q ss_pred CCccEEEecCCchhhhCchH----HHHHhcCCCccEEechhhHhhhhccchHh--h----hcC---CCeEEecCCCEEEe
Q 004964 53 STIDAVLLSHPDTLHLGALP----YAMKQLGLSAPVFSTEPVYRLGLLTMYDQ--Y----LSR---RSVTRLTYSQNYHL 119 (721)
Q Consensus 53 ~~Id~IlLTH~H~DHiGgLp----~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~--~----~~~---~~i~~v~y~q~~~l 119 (721)
..|..-+|||+|+||+.|+- ...++ -+-.||+..-|.+..+-...+. | .+. -+++.+++.+...+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeee
Confidence 57889999999999999874 33221 1356999999988765433222 1 111 12677888777666
Q ss_pred ccccCCeEEEEecCCCcc--C----ceEEEEEEC--CeEEEEEecCCCcC
Q 004964 120 SGKGEGIVVAPHVAGHLL--G----GTVWKITKD--GEDVIYAVDYNRRK 161 (721)
Q Consensus 120 ~~~~~gl~it~~~aGH~~--G----s~~~~I~~~--~~~IlytGD~~~~~ 161 (721)
. .-.+++.+++..|-. | |+++.+... ++-++|.||.....
T Consensus 189 t--~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~ 236 (356)
T COG5212 189 T--LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDD 236 (356)
T ss_pred e--eeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcch
Confidence 3 124677889888854 3 477888764 67899999987643
No 55
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=95.97 E-value=0.0091 Score=48.13 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCcEEEEEECCeEEEE-eCCCCCCCCcccCccccCCCCCccEEEecCCc-hhhhCc
Q 004964 17 NPLSYLVSIDGFNFLI-DCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD-TLHLGA 70 (721)
Q Consensus 17 g~s~~ll~~~~~~ILi-DcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H-~DHiGg 70 (721)
.+.|++|.+|+.+.|+ +||-... .....-+....+++.||||+.+ ++++||
T Consensus 11 ~~p~l~l~~d~~rYlFGn~gEGtQ---R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 11 SGPSLLLFFDSRRYLFGNCGEGTQ---RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCCEEEEEeCCceEEeccCCcHHH---HHHHHcCCCccccceEEECCCCcccccCC
Confidence 3489999999999999 9994321 1222234456799999999999 999987
No 56
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.052 Score=56.46 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE-EechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV-FSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I-y~T~pt~~l~~ 95 (721)
-+...++..++..+++|.|.. .+.........|+.+.+||.|.+|+|.+-.+.. .|+ |-+ .-..++
T Consensus 94 ~~~~tl~~d~~~v~v~~~gls------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~-----sp~l~~s--~e~~gr 160 (302)
T KOG4736|consen 94 QGQITLVVDGGDVVVVDTGLS------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ-----SPILYHS--MEYIGR 160 (302)
T ss_pred hcccceeecCCceEEEecCCc------hhhhcCcChhhcceeEEeccCcccccccccccC-----CHHHhhh--hhhcCC
Confidence 344567777788899999964 223334456799999999999999998855432 111 111 101111
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE--CCeEEEEEecCCCcCc
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK--DGEDVIYAVDYNRRKE 162 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~--~~~~IlytGD~~~~~~ 162 (721)
+..-..++..+.+.+. +++.+. -.+||+.-+....+.. ..++++|+||+-.+..
T Consensus 161 ---------~~~pt~l~e~~~~~l~---~~~~V~-~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 161 ---------HVTPTELDERPYLKLS---PNVEVW-KTPGHTQHDISVLVHNVDLYGTVAITGDLFPREE 216 (302)
T ss_pred ---------ccChhhhccCCccccC---CceeEe-eCCCCCCcceEEEEEeecccceEEEEeecccCCc
Confidence 1112234445666663 444444 3578988766666654 5689999999977653
No 57
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=93.53 E-value=0.18 Score=56.42 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEEEEeecCCCCCCcE-EEEEECCeEEEEeCCCCCC-CCccc----CccccC---CCCCccEEEecCCchhhhCchHHHH
Q 004964 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDH-FDPSL----LQPLSK---VASTIDAVLLSHPDTLHLGALPYAM 75 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~-~ll~~~~~~ILiDcG~~~~-~~~~~----l~~l~~---~~~~Id~IlLTH~H~DHiGgLp~L~ 75 (721)
+||+|+ +++.+.++| +++++++. .|+++|.... .|... +.+.+. .....-++.++|.|.+|.|.++.+.
T Consensus 151 Ikf~p~-~aGhVlgacMf~veiagv-~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vI 228 (668)
T KOG1137|consen 151 IKFWPY-HAGHVLGACMFMVEIAGV-RLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVI 228 (668)
T ss_pred eEEEee-ccchhhhheeeeeeeceE-EEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhH
Confidence 799998 588887777 67888765 5668996432 12111 112211 2356778999999999999999988
Q ss_pred HhcCCC-----ccEEechhhHhhhhccchHhhhc
Q 004964 76 KQLGLS-----APVFSTEPVYRLGLLTMYDQYLS 104 (721)
Q Consensus 76 ~~~g~~-----~~Iy~T~pt~~l~~~~l~d~~~~ 104 (721)
...-.+ .|||+...+.++...+ .++|.+
T Consensus 229 h~~v~rGGR~L~PvFAlgrAqELllil-deyw~~ 261 (668)
T KOG1137|consen 229 HSTVPRGGRVLIPVFALGRAQELLLIL-DEYWGN 261 (668)
T ss_pred HhhccCCCceEeeeeecchHHHHHHHH-HHHhhc
Confidence 754334 6899999988876543 334443
No 58
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.92 E-value=0.11 Score=57.37 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=45.6
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCcc--ccCCCCCccEEEecCCchhhhCchHHHHHh----cCCCccEEechh
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQP--LSKVASTIDAVLLSHPDTLHLGALPYAMKQ----LGLSAPVFSTEP 89 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~--l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~----~g~~~~Iy~T~p 89 (721)
.+..+|+-+...|+||+=..+.-....++. -...-..|.+|+-||+|.||.||.--+... .| +++|.++..
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG-kV~iiAP~G 202 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG-KVQIIAPAG 202 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccC-ceeEecchh
Confidence 455778878889999987544311111111 111235789999999999999998766542 23 567777643
No 59
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=91.74 E-value=0.11 Score=59.56 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=45.6
Q ss_pred EEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHH
Q 004964 8 TPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (721)
Q Consensus 8 t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~ 76 (721)
.+|+|+. +.+.|+-+||.+||++-|..... ..|. +-.+...||+|||||.-.|.++|+-.|+.
T Consensus 41 YIfpGg~---gdaALFavnGf~iLv~GgserKS--~fwk-lVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 41 YIFPGGR---GDAALFAVNGFNILVNGGSERKS--CFWK-LVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred EECCCCC---CcceeEeecceEEeecCCccccc--chHH-HHHHHhhhhhhhhcccccCccccchHHHH
Confidence 4455544 34567888999999999965321 1222 33467799999999999999999887765
No 60
>PRK00685 metal-dependent hydrolase; Provisional
Probab=64.55 E-value=18 Score=36.49 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=44.4
Q ss_pred cccCHHHHHHHhhhcCCcEEEEecCC-----HHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 529 GRADGRSIKTILSHVAPLKLVLVHGS-----AEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 529 g~~D~rsl~~ii~~l~PrkliLv~g~-----~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
.+.+......+...++||++|++|-. ....+.|++.+++ .+.++..|..|+.+++
T Consensus 169 ~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 169 FTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred cccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 36788888999999999999999964 2345677777776 6778999999998864
No 61
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=34.86 E-value=48 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=29.3
Q ss_pred EEEEEEEEecccccCHHHHHHHhhhcCCcEEE
Q 004964 518 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 549 (721)
Q Consensus 518 v~c~v~~id~~g~~D~rsl~~ii~~l~Prkli 549 (721)
-+..+..|-+|=|+--..|+..+..|+|+++|
T Consensus 72 ~~~~~~~VPYSeHSSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 72 GNVRIYRVPYSEHSSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCceEEEEecccCCCHHHHHHHHHhcCCcEEE
Confidence 45678889999999999999999999999987
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=30.52 E-value=73 Score=32.09 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCcEEEeecccccccCCCcc----h--HHHHHHHHHHHHhcCCeEEEeccCchHHHHHHHHHHHHHHh
Q 004964 174 VRPAVLITDAYNALHNQPPRQ----Q--REMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 236 (721)
Q Consensus 174 ~~~d~LI~est~~~~~~~~r~----~--~e~l~~~I~~~l~~gG~VLIP~~~~GR~qEll~~L~~~~~~ 236 (721)
..+|+++++........+... . .+.+++.+.+.|+.||.+++-++..++.++++..+..++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 357888876532211111111 0 12566777888999999999999999999999988877654
No 63
>PRK00055 ribonuclease Z; Reviewed
Probab=26.01 E-value=1.2e+02 Score=31.31 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=45.2
Q ss_pred cccccCHHHHHHHhhhcCCcEEEEecCCHHH---HHHHHHHHhhccCCceeecCCCcEEEEce
Q 004964 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEA---TEHLKQHCLKHVCPHVYTPQIEETIDVTS 586 (721)
Q Consensus 527 ~~g~~D~rsl~~ii~~l~PrkliLv~g~~~~---~~~l~~~~~~~~~~~v~~P~~ge~v~~~~ 586 (721)
..+|..-.....+...++|++++|.|=++.. .+.+.+.+++.. .+|+.+.-|.++++..
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~~ 268 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF-PNTELAEDLMRVEVPF 268 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc-CCcEEccCCcEEEecC
Confidence 4689999999999999999999999987643 344555555444 3788888898888743
No 64
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=21.22 E-value=1.9e+02 Score=30.08 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=41.4
Q ss_pred EEEEEEecccccCHHHHHHHhhhc--CCcEEEEecCCHHHHHHHHHHHhhccCCc
Q 004964 520 CLLIFIDYEGRADGRSIKTILSHV--APLKLVLVHGSAEATEHLKQHCLKHVCPH 572 (721)
Q Consensus 520 c~v~~id~~g~~D~rsl~~ii~~l--~PrkliLv~g~~~~~~~l~~~~~~~~~~~ 572 (721)
=.|.|. .|.+=|..|..++..+ .|+++|.|-.+++....+.+.|+. .+++
T Consensus 153 ~GIlft--~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~-~~I~ 204 (252)
T PF11019_consen 153 DGILFT--GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKK-SGID 204 (252)
T ss_pred cCeEEe--CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhh-CCCc
Confidence 334443 5788889999999998 699999999999999999999997 4443
Done!