Query 004964
Match_columns 721
No_of_seqs 453 out of 3385
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i7x_A Protein CFT2; polyadeny 100.0 1.1E-92 3.9E-97 831.1 40.3 568 5-585 1-717 (717)
2 3iek_A Ribonuclease TTHA0252; 100.0 4.3E-72 1.5E-76 625.2 44.9 411 5-584 1-431 (431)
3 2i7t_A Cleavage and polyadenyl 100.0 1.4E-65 4.6E-70 578.2 42.6 420 3-586 10-458 (459)
4 3af5_A Putative uncharacterize 100.0 1.8E-60 6E-65 556.4 43.0 425 3-584 187-650 (651)
5 2ycb_A Beta-CAsp RNAse, cleava 100.0 1.5E-59 5.2E-64 547.5 44.4 425 3-584 178-635 (636)
6 2xr1_A Cleavage and polyadenyl 100.0 1.5E-59 5E-64 547.3 41.3 425 3-584 182-639 (640)
7 3zq4_A Ribonuclease J 1, RNAse 100.0 6.5E-43 2.2E-47 400.2 30.9 307 3-344 7-340 (555)
8 3bk2_A RNAse J, metal dependen 100.0 3.5E-40 1.2E-44 379.1 37.7 308 3-344 15-355 (562)
9 2az4_A Hypothetical protein EF 100.0 2.1E-33 7.2E-38 313.2 23.7 301 3-342 5-356 (429)
10 4b87_A DNA cross-LINK repair 1 99.9 3.9E-24 1.4E-28 232.6 24.2 210 4-246 11-228 (367)
11 3zdk_A 5' exonuclease apollo; 99.9 4.2E-22 1.4E-26 214.0 16.4 178 53-247 23-206 (336)
12 1zkp_A Hypothetical protein BA 99.8 8.9E-19 3E-23 182.3 17.3 168 3-187 23-204 (268)
13 3g1p_A Protein PHNP; C-P lyase 99.8 1E-18 3.5E-23 181.0 15.0 166 4-188 2-193 (258)
14 2cbn_A Ribonuclease Z; phospho 99.8 2.1E-18 7.3E-23 182.8 17.5 171 5-188 2-239 (306)
15 1y44_A Ribonuclease Z; zinc-de 99.8 1.1E-18 3.7E-23 186.5 12.4 171 5-188 1-237 (320)
16 3md7_A Beta-lactamase-like; ss 99.7 1.1E-16 3.8E-21 169.0 16.1 167 3-187 27-235 (293)
17 3zwf_A Zinc phosphodiesterase 99.7 3.8E-17 1.3E-21 178.1 12.8 176 5-188 1-279 (368)
18 2e7y_A TRNAse Z; tRNA maturati 99.7 2.3E-16 7.9E-21 164.5 15.8 151 18-188 12-214 (280)
19 3kl7_A Putative metal-dependen 99.7 5.4E-15 1.9E-19 151.0 21.5 145 3-184 28-183 (235)
20 3jxp_A Coenzyme PQQ synthesis 99.6 2.2E-16 7.6E-21 168.7 9.6 159 17-187 40-227 (321)
21 3rpc_A Possible metal-dependen 99.6 1.8E-14 6.1E-19 149.7 16.3 160 3-186 3-194 (264)
22 3dha_A N-acyl homoserine lacto 99.6 8.7E-15 3E-19 150.6 11.5 134 17-161 38-200 (254)
23 2r2d_A AGR_PTI_140P, Zn-depend 99.5 2.5E-14 8.4E-19 149.0 12.7 137 17-161 42-218 (276)
24 3m8t_A 'BLR6230 protein; subcl 99.5 1.5E-14 5.3E-19 151.9 10.9 138 17-160 54-206 (294)
25 1k07_A FEZ-1 beta-lactamase; m 99.5 2.3E-14 8E-19 148.4 11.1 137 17-159 24-177 (263)
26 2wyl_A L-ascorbate-6-phosphate 99.5 2.9E-13 9.8E-18 147.1 19.8 164 3-184 36-250 (360)
27 3l6n_A Metallo-beta-lactamase; 99.5 1.9E-14 6.5E-19 144.6 9.2 129 17-159 30-161 (219)
28 3bv6_A Metal-dependent hydrola 99.5 8.1E-13 2.8E-17 144.5 20.6 164 3-184 60-275 (379)
29 2xf4_A Hydroxyacylglutathione 99.5 2.8E-14 9.6E-19 142.5 8.2 133 17-160 12-155 (210)
30 1ztc_A Hypothetical protein TM 99.5 5.5E-14 1.9E-18 142.0 9.9 147 5-161 13-179 (221)
31 3esh_A Protein similar to meta 99.5 2.8E-14 9.5E-19 149.3 8.0 139 17-161 47-211 (280)
32 3aj3_A MLR6805 protein, 4-pyri 99.5 3.1E-14 1E-18 148.2 7.6 148 2-161 1-212 (274)
33 2zwr_A Metallo-beta-lactamase 99.5 6.1E-14 2.1E-18 140.0 8.8 131 16-160 11-148 (207)
34 3adr_A Putative uncharacterize 99.5 5.1E-13 1.8E-17 137.7 15.9 128 17-160 19-169 (261)
35 1e5d_A Rubredoxin\:oxygen oxid 99.5 3.9E-13 1.3E-17 147.7 15.4 131 17-159 34-168 (402)
36 1m2x_A Class B carbapenemase B 99.5 9.7E-14 3.3E-18 140.0 9.1 129 17-159 26-157 (223)
37 4hl2_A Beta-lactamase NDM-1; s 99.5 7.3E-15 2.5E-19 150.4 0.8 136 16-160 46-185 (243)
38 4efz_A Metallo-beta-lactamase 99.4 1E-13 3.5E-18 146.6 8.6 150 3-160 3-178 (298)
39 2p18_A Glyoxalase II; metallop 99.4 5.7E-13 1.9E-17 141.7 13.6 140 3-160 27-184 (311)
40 2gcu_A Putative hydroxyacylglu 99.4 1.8E-13 6.2E-18 140.6 9.0 136 4-160 2-146 (245)
41 1mqo_A Beta-lactamase II; alph 99.4 9.8E-14 3.4E-18 140.4 6.5 129 17-159 40-171 (227)
42 1a7t_A Metallo-beta-lactamase; 99.4 1.3E-13 4.6E-18 140.0 7.0 130 17-160 36-168 (232)
43 3tp9_A Beta-lactamase and rhod 99.4 2.9E-13 1E-17 152.4 10.4 144 3-160 2-153 (474)
44 2qed_A Hydroxyacylglutathione 99.4 3.3E-13 1.1E-17 139.7 9.7 129 4-159 7-137 (258)
45 1qh5_A Glyoxalase II, protein 99.4 4.5E-13 1.5E-17 138.9 9.8 121 17-159 11-137 (260)
46 1p9e_A Methyl parathion hydrol 99.4 2.4E-13 8.3E-18 145.9 7.0 137 18-161 97-260 (331)
47 4ax1_B Metallo-beta-lactamase 99.4 6.7E-13 2.3E-17 139.7 10.0 137 17-159 57-209 (303)
48 1xm8_A Glyoxalase II; structur 99.4 8.6E-13 2.9E-17 136.3 10.3 121 17-159 11-134 (254)
49 4ad9_A Lactb2, beta-lactamase- 99.4 5.2E-13 1.8E-17 140.2 8.8 133 17-159 31-168 (289)
50 1vjn_A Zn-dependent hydrolase 99.4 2.5E-12 8.5E-17 129.9 13.3 122 17-184 19-147 (220)
51 2bib_A CBPE, teichoic acid pho 99.4 5.6E-12 1.9E-16 144.5 17.8 219 3-245 4-279 (547)
52 2zo4_A Metallo-beta-lactamase 99.4 9.2E-13 3.1E-17 140.0 10.4 135 17-160 21-194 (317)
53 1sml_A Protein (penicillinase) 99.4 1.1E-12 3.8E-17 136.2 9.7 137 17-159 37-187 (269)
54 1ycg_A Nitric oxide reductase; 99.4 5.5E-12 1.9E-16 138.3 15.3 130 17-158 35-168 (398)
55 3q6v_A Beta-lactamase; metallo 99.3 8.2E-13 2.8E-17 133.7 7.7 135 16-160 24-172 (233)
56 3hnn_A Putative diflavin flavo 99.3 4.5E-13 1.5E-17 138.9 5.6 130 17-157 42-175 (262)
57 2ohh_A Type A flavoprotein FPR 99.3 1.7E-12 5.8E-17 142.7 9.8 132 17-158 34-172 (404)
58 2y8b_A Metallo-B-lactamase; hy 99.3 1.1E-12 3.8E-17 136.2 7.7 130 17-160 67-201 (265)
59 2vw8_A PA1000, PQSE; quinolone 99.3 1.9E-12 6.5E-17 136.9 9.6 137 17-159 23-183 (303)
60 3iog_A Beta-lactamase; hydrola 99.3 1.8E-12 6E-17 130.7 8.8 134 16-158 21-167 (227)
61 2fhx_A SPM-1; metallo-beta-lac 99.3 1.8E-12 6E-17 132.6 8.1 133 17-159 29-187 (246)
62 3r2u_A Metallo-beta-lactamase 99.3 2.3E-12 7.9E-17 144.7 8.5 142 4-160 24-173 (466)
63 4dik_A Flavoprotein; TM0755, e 99.3 4.9E-12 1.7E-16 139.2 10.7 129 17-159 51-183 (410)
64 1jjt_A IMP-1 metallo beta-lact 99.3 2E-12 6.8E-17 131.0 6.4 128 17-159 32-161 (228)
65 2q9u_A A-type flavoprotein; fl 99.3 1.3E-11 4.6E-16 136.2 13.2 130 17-159 40-174 (414)
66 4eyb_A Beta-lactamase NDM-1; m 99.2 1.6E-12 5.4E-17 135.4 1.7 135 17-159 74-211 (270)
67 2p97_A Hypothetical protein; p 99.1 3.7E-11 1.3E-15 119.2 6.9 123 14-161 20-142 (201)
68 2cfu_A SDSA1; SDS-hydrolase, l 98.9 8.2E-10 2.8E-14 128.7 6.9 138 17-160 122-303 (658)
69 2p4z_A Metal-dependent hydrola 98.8 3.6E-09 1.2E-13 110.8 6.4 87 4-92 12-105 (284)
70 2yhe_A SEC-alkyl sulfatase; hy 98.2 1.2E-09 4.1E-14 127.0 0.0 136 18-159 133-313 (668)
71 3h3e_A Uncharacterized protein 98.3 1.4E-06 4.9E-11 89.9 10.3 76 5-92 13-94 (267)
72 2wyl_A L-ascorbate-6-phosphate 73.2 3.8 0.00013 43.4 5.8 66 528-593 257-332 (360)
73 3rpc_A Possible metal-dependen 69.3 6 0.00021 39.7 6.0 57 528-584 202-264 (264)
74 3bv6_A Metal-dependent hydrola 66.5 5.5 0.00019 42.5 5.3 62 528-589 282-353 (379)
75 3zdk_A 5' exonuclease apollo; 52.6 8.2 0.00028 40.5 3.5 35 522-556 269-304 (336)
76 1zkp_A Hypothetical protein BA 44.8 25 0.00084 34.9 5.5 55 529-583 212-267 (268)
77 2e7y_A TRNAse Z; tRNA maturati 38.4 52 0.0018 32.4 6.8 58 527-584 219-280 (280)
78 1y44_A Ribonuclease Z; zinc-de 38.1 43 0.0015 34.0 6.3 62 528-590 245-310 (320)
79 3evf_A RNA-directed RNA polyme 32.9 82 0.0028 31.9 7.0 95 175-274 140-247 (277)
80 3lkz_A Non-structural protein 32.3 66 0.0022 33.1 6.1 127 130-260 98-257 (321)
81 3gcz_A Polyprotein; flavivirus 24.2 83 0.0028 32.0 5.2 96 174-274 155-264 (282)
82 3eld_A Methyltransferase; flav 23.9 1.6E+02 0.0056 30.0 7.4 86 175-261 147-245 (300)
83 1jli_A Interleukin 3, multi-CS 23.6 37 0.0012 29.2 2.0 33 627-659 68-100 (112)
84 2cbn_A Ribonuclease Z; phospho 22.1 1.4E+02 0.0047 29.8 6.7 56 528-584 247-306 (306)
85 3zwf_A Zinc phosphodiesterase 20.7 67 0.0023 33.8 4.0 59 528-586 287-359 (368)
No 1
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=100.00 E-value=1.1e-92 Score=831.13 Aligned_cols=568 Identities=23% Similarity=0.373 Sum_probs=376.7
Q ss_pred EEEEEeecCCCC-CCcEEEEEECCeEEEEeCCCCCCC-C-cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC--
Q 004964 5 VQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHF-D-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-- 79 (721)
Q Consensus 5 m~~t~lgG~~~~-g~s~~ll~~~~~~ILiDcG~~~~~-~-~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g-- 79 (721)
|+|++|+|+.+. +++||+|+.++.+||||||+.... . ...+..+.....+||+|||||+|.||+||+|+|.++++
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g 80 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhc
Confidence 478888766554 999999999999999999997531 0 10111222223489999999999999999999997532
Q ss_pred --CCccEEechhhHhhhhccchHhhhcC--------------------CCeEEecCCCEEEeccccCCeEEEEecCCCcc
Q 004964 80 --LSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 137 (721)
Q Consensus 80 --~~~~Iy~T~pt~~l~~~~l~d~~~~~--------------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~ 137 (721)
.++|||+|.+|..+++.++.+.+... ..+++++|++.+.+.++.++++|+++++||++
T Consensus 81 ~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 37899999999998887766543211 13688999999998322368999999999999
Q ss_pred CceEEEEEECCeEEEEEecCCCcCccccCcccc--------cccCCCcEEEeecccccccCCCcchHHHHHHHHHHHHhc
Q 004964 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 209 (721)
Q Consensus 138 Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l--------~~l~~~d~LI~est~~~~~~~~r~~~e~l~~~I~~~l~~ 209 (721)
|+++|+|+.++++|+||||+++..+.++.++.+ ..+.++|+||+||+|+...++.+...+.|++.|.+++++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~h~~~~~~~~l~~~i~~~l~~ 240 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988887766543 345689999999999988777654233999999999999
Q ss_pred CCeEEEeccCchHHHHHHHHHHHHH-H---hcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCC--CCCC-
Q 004964 210 GGNVLLPVDSAGRVLELLLILEDYW-A---EHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--NAFL- 281 (721)
Q Consensus 210 gG~VLIP~~~~GR~qEll~~L~~~~-~---~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~--~PF~- 281 (721)
+|+|+||+|++||+|||+++|.++| + .+.+ ++|||++++++.+++++|+.+++||+..+.+.|.. ++ +||.
T Consensus 241 ~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~~ 319 (717)
T 2i7x_A 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFEI 319 (717)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTCC
T ss_pred CCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhc-ccccCCccc
Confidence 9999999999999999999999998 2 3344 78999999999999999999999999998887765 44 5999
Q ss_pred CCCeEEcCChHHHhccCCCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCC-CCChhHHHhcC--C--------
Q 004964 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-FGTLARMLQAD--P-------- 350 (721)
Q Consensus 282 ~~~~~~~~s~~e~~~~~~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~-~gT~g~~L~~~--~-------- 350 (721)
|+++++ .+.+++.++ ++|+||+||. .+|+++++|++|++||+|+|||||||+ +||+||+|+.. .
T Consensus 320 ~~~l~~-~~~~~l~~~-~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~~ 394 (717)
T 2i7x_A 320 GSRIKI-IAPNELSKY-PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTF 394 (717)
T ss_dssp TTTEEE-CCGGGGGGC-CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC------
T ss_pred cccCcc-CCHHHHhhC-CCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHhhhhhhccccccc
Confidence 899998 778888776 6799888866 899999999999999999999999999 69999999742 1
Q ss_pred --------CCCceeeecceEEecchhhHHHHHHHHHHHHHH-HHHHh-----------------hhhhhhccc-------
Q 004964 351 --------PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE-EALKA-----------------SLVKEEESK------- 397 (721)
Q Consensus 351 --------~~~~v~~~~~~~v~L~g~el~~y~~~~~~~~~~-~~~~~-----------------~~~~~~~~~------- 397 (721)
.++.++++..+|+||+|+||++|+++++.++++ .++.+ +...+++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (717)
T 2i7x_A 395 PEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVE 474 (717)
T ss_dssp --CCCCEECCEEEEEEEEEEEESCSCCC----------------------------------------------------
T ss_pred ccccccccCCceEEEEEeeeccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccc
Confidence 127899999999999999999999987422221 11111 111111211
Q ss_pred -------------cCCCCCCCC--CCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCC
Q 004964 398 -------------ASLGPDNNL--SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDD 462 (721)
Q Consensus 398 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~~Dd 462 (721)
++|++|+++ +.+...+....+... .......++||++.++. +++++||||+++|+||||
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---~~~~~mFP~~~~~~k~Dd 548 (717)
T 2i7x_A 475 NVNGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSA---AKKNTEVPVDIIIQPSA---ASKHKMFPFNPAKIKKDD 548 (717)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccchhhcccccccccccc---ccccccCcceeeecccc---CCccCcCCcccCcccccC
Confidence 111111111 011111111111100 00112344689887663 457899999999999999
Q ss_pred cCcccCCCccccccccchh---hhh--------------c-c-CCCCCCCCcc---------------------ccc---
Q 004964 463 FGEVINPDDYIIKDEDMDQ---AAM--------------H-I-GGDDGKLDEG---------------------SAS--- 499 (721)
Q Consensus 463 YGe~i~~~~~~~~~~~~~~---~~~--------------~-~-~~~~~~~~~~---------------------~~~--- 499 (721)
|||+||||||+++++..+. +.. + . ...+.++++. +.+
T Consensus 549 yGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (717)
T 2i7x_A 549 YGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFD 628 (717)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred CCCccCHHHhehhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999998864421 000 0 0 0000011100 000
Q ss_pred ----ccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccCCceee
Q 004964 500 ----LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 575 (721)
Q Consensus 500 ----~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~ 575 (721)
....+.|+|||+++.+|+|||+|+||||||++|+|||++|||+++|||||||||+++++++|+++|++. +.+||+
T Consensus 629 ~~~~~~~~~~P~K~v~~~~~v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~~~~~l~~~~~~~-~~~v~~ 707 (717)
T 2i7x_A 629 NLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVN 707 (717)
T ss_dssp CCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEE
T ss_pred cchhhhccCCCeEEEEeeEEEEEEEEEEEEecCCCCcHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHHHHhc-CCeEEe
Confidence 013579999999999999999999999999999999999999999999999999999999999999864 789999
Q ss_pred cCCCcEEEEc
Q 004964 576 PQIEETIDVT 585 (721)
Q Consensus 576 P~~ge~v~~~ 585 (721)
|.+||+|++.
T Consensus 708 p~~~e~v~~~ 717 (717)
T 2i7x_A 708 MPLNKIVEFS 717 (717)
T ss_dssp CCSSCCEEEC
T ss_pred CCCCCeecCC
Confidence 9999999974
No 2
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=4.3e-72 Score=625.21 Aligned_cols=411 Identities=22% Similarity=0.314 Sum_probs=360.6
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCC-cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCcc
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~-~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (721)
|++++|||++++|+|||+|+.++.+||||||+..+.. ...+..++..+.+||+|||||+|.||+||+|+|.+ .+++++
T Consensus 1 M~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~ 79 (431)
T 3iek_A 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGP 79 (431)
T ss_dssp CEEEECSCSSSSSCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSC
T ss_pred CEEEEeCCCCCCCCcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCe
Confidence 5899999999899999999999999999999955421 11234455567899999999999999999999987 467899
Q ss_pred EEechhhHhhhhccchHhhhcC--------------CCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCe
Q 004964 84 VFSTEPVYRLGLLTMYDQYLSR--------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 149 (721)
Q Consensus 84 Iy~T~pt~~l~~~~l~d~~~~~--------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~ 149 (721)
||+|.+|.++.+.++.+...-. ..+.++++++.+.+ ++++++++++||++|+++|.|+.+++
T Consensus 80 Iy~t~~t~~l~~~~l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l----~g~~v~~~~agH~~Gs~~~~i~~~~~ 155 (431)
T 3iek_A 80 VYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRL----GALSLAFGQAGHLPGSAFVVAQGEGR 155 (431)
T ss_dssp EEECHHHHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEE----TTEEEEEEECCSSTTCEEEEEEETTE
T ss_pred EEEcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEe----CCEEEEEEeCCCCcCceEEEEEECCE
Confidence 9999999999887766643211 24889999999999 79999999999999999999999999
Q ss_pred EEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCchHHHHHHH
Q 004964 150 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLL 228 (721)
Q Consensus 150 ~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~GR~qEll~ 228 (721)
+++||||++...+.++.... .+.++|+||+||||+...++++..++ +|.+.|.+++++||+||||+|++||+|||++
T Consensus 156 ~ilfsGD~~~~~~~~l~~~~--~~~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~qell~ 233 (431)
T 3iek_A 156 TLVYSGDLGNREKDVLPDPS--LPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILY 233 (431)
T ss_dssp EEEECCCCCCTTSSSSCCCC--BCCCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHH
T ss_pred EEEEeCCCCCCCCcccCCcc--ccCCccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEeccchHHHHHHH
Confidence 99999999988877664332 24689999999999998888887777 9999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccC--CCCcEEE
Q 004964 229 ILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP--DGPKLVL 305 (721)
Q Consensus 229 ~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~--~~p~Vi~ 305 (721)
+|+++|++ + ++|||++|+|+.+++++|+.++|||++++++.+.. +.|||.|++++++.+.++++++. ++|||||
T Consensus 234 ~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~pf~~~~~~~~~~~~~~~~~~~~~~p~vii 310 (431)
T 3iek_A 234 VLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQ-GKNPFRPAGLEVVEHTEASKALNRAPGPMVVL 310 (431)
T ss_dssp HHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHT-TSCTTCCTTEEECCSHHHHHHHHHSCSSEEEE
T ss_pred HHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCCCCCCeEEeCCHHHHHHHhcCCCCeEEE
Confidence 99999987 5 79999999999999999999999999999887754 78999999999999999887653 8999999
Q ss_pred EcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHHHHHHHHHHHH
Q 004964 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 385 (721)
Q Consensus 306 as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~~~~~~~~~~~ 385 (721)
|++|||++|+++++|++|++||+|+|||||||++||+||+|++. ++
T Consensus 311 a~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~--~~-------------------------------- 356 (431)
T 3iek_A 311 AGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIAR--PP-------------------------------- 356 (431)
T ss_dssp ESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTC--CS--------------------------------
T ss_pred ecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcC--Cc--------------------------------
Confidence 99999999999999999999999999999999999999999942 01
Q ss_pred HHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCCcCc
Q 004964 386 LKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGE 465 (721)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~~DdYGe 465 (721)
.+.+.|
T Consensus 357 ------------------------------------------------~v~~~g-------------------------- 362 (431)
T 3iek_A 357 ------------------------------------------------AVRILG-------------------------- 362 (431)
T ss_dssp ------------------------------------------------EEEETT--------------------------
T ss_pred ------------------------------------------------EEEECC--------------------------
Confidence 111111
Q ss_pred ccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-cccccCHHHHHHHhhhcC
Q 004964 466 VINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRADGRSIKTILSHVA 544 (721)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id-~~g~~D~rsl~~ii~~l~ 544 (721)
+.++|||+|..+| ||||+|++.|..++..++
T Consensus 363 ------------------------------------------------~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~ 394 (431)
T 3iek_A 363 ------------------------------------------------EEVPLRASVHTLGGFSGHAGQDELLDWLQGEP 394 (431)
T ss_dssp ------------------------------------------------EEEECCSEEEECGGGCSSCCHHHHHHHHTTCS
T ss_pred ------------------------------------------------EEEEEEEEEEEECCccccCCHHHHHHHHHhCC
Confidence 1589999999996 999999999999999885
Q ss_pred CcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 545 PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 545 PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
+++||||++++++.|++.+++... ++++|.+||++++
T Consensus 395 --~v~lvHge~~~~~~l~~~l~~~~~-~~~~p~~~~~~~~ 431 (431)
T 3iek_A 395 --RVVLVHGEEEKLLALGKLLALRGQ-EVSLARFGEGVPV 431 (431)
T ss_dssp --EEEEESSCHHHHHHHHHHHHHTTC-EEEECCTTCCEEC
T ss_pred --eEEEECCCHHHHHHHHHHHHHhCC-cEEECCCCCEEeC
Confidence 999999999999999999887654 9999999999874
No 3
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=1.4e-65 Score=578.19 Aligned_cols=420 Identities=25% Similarity=0.479 Sum_probs=325.9
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc-ccCccc-cCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SLLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~-~~l~~l-~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
.+|++++||++++.|+||++|+.++.+||||||+..+... ..+..+ ...+.+||+|||||+|.||+||+|++..+.++
T Consensus 10 ~~m~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~ 89 (459)
T 2i7t_A 10 DQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSF 89 (459)
T ss_dssp EEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSC
T ss_pred CeEEEEEEecCCCCCCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcCC
Confidence 4699999999888899999999999999999998754321 112111 23566899999999999999999999887788
Q ss_pred CccEEechhhHhhhhccchHhhh------------------cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEE
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYL------------------SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 142 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~------------------~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~ 142 (721)
+++||+|.+|..+.+.++.+... ....+..+++++.+.+ ++++++++++||++|+++|
T Consensus 90 ~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~gi~v~~~~~GH~~Gs~~~ 165 (459)
T 2i7t_A 90 KGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEV----AGIKFWCYHAGHVLGAAMF 165 (459)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEE----TTEEEEEEECCSSTTCEEE
T ss_pred CCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEE----CCEEEEEEeCCCccCcEEE
Confidence 89999999999887665544310 0124788999999999 6899999999999999999
Q ss_pred EEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCch
Q 004964 143 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 221 (721)
Q Consensus 143 ~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~G 221 (721)
.|+.++++++||||+++.++.++.++.++. .++|+||+|+||+...++++..++ .|.+.+.+++++||+|+||+|++|
T Consensus 166 ~i~~~~~~il~sGD~~~~~~~~~~~~~~~~-~~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~g 244 (459)
T 2i7t_A 166 MIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244 (459)
T ss_dssp EEEETTEEEEECCSCCCC-----CCCCCCS-SCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSS
T ss_pred EEEECCcEEEEeCCCCCCCCcccCCCCcCC-CCCeEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEEecchh
Confidence 999999999999999998877665544332 589999999999988888787777 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCC
Q 004964 222 RVLELLLILEDYWAEH-SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 299 (721)
Q Consensus 222 R~qEll~~L~~~~~~~-~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~ 299 (721)
|+|||+++|+++|+++ .+ .+|||++|+++.+++++|+.+.+||++.+++.+. ..|||.|++++.+.+.+++. ..
T Consensus 245 r~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~--~~ 320 (459)
T 2i7t_A 245 RAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFD--DI 320 (459)
T ss_dssp SHHHHHHHHHHHHHHCGGGTTSCEEEC-----------------------------------CCSEEECCCTTSSC--CC
T ss_pred HHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhc--ccCCcCCCcceeeCCHHHhc--CC
Confidence 9999999999999886 34 7899999999999999999999999999888775 47999999999988776643 27
Q ss_pred CCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHHHHHHHHH
Q 004964 300 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 379 (721)
Q Consensus 300 ~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~y~~~~~~ 379 (721)
+||||||++|||++|+++++|++|++||+|+|+|||||++||+||+|++++. .+.
T Consensus 321 ~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~--~~~----------------------- 375 (459)
T 2i7t_A 321 GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE--EIT----------------------- 375 (459)
T ss_dssp SSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCS--EEE-----------------------
T ss_pred CCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCc--eee-----------------------
Confidence 8999999999999999999999999999999999999999999999984200 000
Q ss_pred HHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcc
Q 004964 380 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE 459 (721)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~ 459 (721)
.+.|
T Consensus 376 --------------------------------------------------------~~~g-------------------- 379 (459)
T 2i7t_A 376 --------------------------------------------------------TMSG-------------------- 379 (459)
T ss_dssp --------------------------------------------------------CTTS--------------------
T ss_pred --------------------------------------------------------eeCC--------------------
Confidence 0000
Q ss_pred cCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHH
Q 004964 460 WDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTI 539 (721)
Q Consensus 460 ~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~i 539 (721)
..++++|+|..+.||+|+|.+.|..+
T Consensus 380 ------------------------------------------------------~~~~~~~~v~~~~~S~Had~~~l~~~ 405 (459)
T 2i7t_A 380 ------------------------------------------------------QKLPLKMSVDYISFSAHTDYQQTSEF 405 (459)
T ss_dssp ------------------------------------------------------CEEECCSEEEECCCSCCCCHHHHHHH
T ss_pred ------------------------------------------------------cEEEEEEEEEEeeecccCCHHHHHHH
Confidence 15789999999999999999999999
Q ss_pred hhhcCCcEEEEecCCHHHHHHHHHHHhhcc------CCceeecCCCcEEEEce
Q 004964 540 LSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQIEETIDVTS 586 (721)
Q Consensus 540 i~~l~PrkliLv~g~~~~~~~l~~~~~~~~------~~~v~~P~~ge~v~~~~ 586 (721)
+..++|+++|+|||++++...|++.++..+ +.++++|.+||+|++..
T Consensus 406 i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 458 (459)
T 2i7t_A 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458 (459)
T ss_dssp HHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEE
T ss_pred HHhcCCCeEEEeCCCHHHHHHHHHHHHHHhccccccCceEEeCCCCCEEEEEe
Confidence 999999999999999999999999887754 48899999999998753
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=1.8e-60 Score=556.41 Aligned_cols=425 Identities=24% Similarity=0.374 Sum_probs=358.7
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCC---cccCcccc---C--CC--CCccEEEecCCchhhhCchH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD---PSLLQPLS---K--VA--STIDAVLLSHPDTLHLGALP 72 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~---~~~l~~l~---~--~~--~~Id~IlLTH~H~DHiGgLp 72 (721)
..|++++|||+++.|++||+|+.++.+||||||+..... ...+..+. . .+ .+||+|||||+|.||+||+|
T Consensus 187 ~~m~i~~LG~~~~vg~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp 266 (651)
T 3af5_A 187 RWIRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLP 266 (651)
T ss_dssp SCEEEEEEECSSSSSCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHH
T ss_pred CceEEEEEecCCCCCCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHH
Confidence 358999999998889999999999999999999864321 11122221 1 34 68999999999999999999
Q ss_pred HHHHhcC-CCccEEechhhHhhhhccchHhhh--c----------------CCCeEEecCCCEEEeccccCCeEEEEecC
Q 004964 73 YAMKQLG-LSAPVFSTEPVYRLGLLTMYDQYL--S----------------RRSVTRLTYSQNYHLSGKGEGIVVAPHVA 133 (721)
Q Consensus 73 ~L~~~~g-~~~~Iy~T~pt~~l~~~~l~d~~~--~----------------~~~i~~v~y~q~~~l~~~~~gl~it~~~a 133 (721)
+|.+. + ++++||+|.+|..+.+..+.++.. . ...+.++++++.+.+. ++++++++++
T Consensus 267 ~L~~~-~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~ 342 (651)
T 3af5_A 267 YLFRY-NLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNA 342 (651)
T ss_dssp HHHHT-TCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEEC
T ss_pred HHHhc-CCCCceEEEcHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEec---CCEEEEEecC
Confidence 99873 4 679999999999887765544321 0 0136789999999984 6899999999
Q ss_pred CCccCceEEEEEECCe--EEEEEecCCCcCccccCcccccccCCCcEEEeeccccccc--CCCcchHH-HHHHHHHHHHh
Q 004964 134 GHLLGGTVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLR 208 (721)
Q Consensus 134 GH~~Gs~~~~I~~~~~--~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~e-~l~~~I~~~l~ 208 (721)
||++|+++|.++.+++ +++||||+++..+.++.++... +.++|+||+||||+... ++++...+ .|.+.|.++++
T Consensus 343 gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~ 421 (651)
T 3af5_A 343 GHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAK-FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIK 421 (651)
T ss_dssp SSSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCB-CSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcEEEEEEECCCceEEEEeCCCCCCccccccccccc-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999888 9999999999888777654332 46899999999999877 77777777 99999999999
Q ss_pred cCCeEEEeccCchHHHHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEc
Q 004964 209 AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 288 (721)
Q Consensus 209 ~gG~VLIP~~~~GR~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~ 288 (721)
++|+||||+|++||+|||+.+|.++|+++.+.+|||+++ ++.+++.+|+.+++||+..+.+.+...+.+||.+++++.+
T Consensus 422 ~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v 500 (651)
T 3af5_A 422 RGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPV 500 (651)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEEC
T ss_pred CCCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCceEEc
Confidence 999999999999999999999999998887789999876 9999999999999999999887776667899999999999
Q ss_pred CChHHHhcc-C-CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecc
Q 004964 289 INKSELDNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLV 366 (721)
Q Consensus 289 ~s~~e~~~~-~-~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~ 366 (721)
.+.+++.++ . ++|+||||++|||++|+++++|++|++||+|+|||||||++||+||+|.... ..+.+
T Consensus 501 ~~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~--~~i~~--------- 569 (651)
T 3af5_A 501 ANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGI--REIPM--------- 569 (651)
T ss_dssp CSHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTC--SEEEE---------
T ss_pred CCHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhcc--ceeee---------
Confidence 987776654 2 7899999999999999999999999999999999999999999999987420 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCC
Q 004964 367 GEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTS 446 (721)
Q Consensus 367 g~el~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~ 446 (721)
.-
T Consensus 570 ---------------------------------------------------------------------~~--------- 571 (651)
T 3af5_A 570 ---------------------------------------------------------------------VG--------- 571 (651)
T ss_dssp ---------------------------------------------------------------------EC---------
T ss_pred ---------------------------------------------------------------------hh---------
Confidence 00
Q ss_pred CCCCCCccccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe
Q 004964 447 VAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID 526 (721)
Q Consensus 447 ~~~mFP~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id 526 (721)
.+|+ ...+.|+|+|..++
T Consensus 572 ---------------~~G~-----------------------------------------------~~~v~v~~~v~~i~ 589 (651)
T 3af5_A 572 ---------------EEGR-----------------------------------------------TEVIKVNMEVHTID 589 (651)
T ss_dssp ---------------GGGC-----------------------------------------------EEEEECCSEEEECG
T ss_pred ---------------cCCC-----------------------------------------------ceEEEeEEEEEEcC
Confidence 0000 12578999999999
Q ss_pred -cccccCHHHHHHHhhhcC--CcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 527 -YEGRADGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 527 -~~g~~D~rsl~~ii~~l~--PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
||||+|++.|+.++..++ |+++|+|||+....+.|++.++..++.++++|.+||++++
T Consensus 590 g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~la~~~~~~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 590 GFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRL 650 (651)
T ss_dssp GGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred cccCcCCHHHHHHHHHHhhcCCCEEEEEcCCHHHHHHHHHHHHHhcCCeEEECCCCCEEEe
Confidence 999999999999999999 9999999999999999999987777889999999999975
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.5e-59 Score=547.53 Aligned_cols=425 Identities=23% Similarity=0.351 Sum_probs=360.7
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCC--cccCcc---ccCCCCCccEEEecCCchhhhCchHHHHHh
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~---l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~ 77 (721)
..|++++|||+++.|+|||+|+.++.+||||||+..... ...+.. +.....+||+|||||+|.||+||+|+|.+.
T Consensus 178 ~~m~i~~LG~~~evg~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~ 257 (636)
T 2ycb_A 178 DWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHY 257 (636)
T ss_dssp CCCEEEEEESSSSSSCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHT
T ss_pred CeEEEEEEecCCCCCCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHhc
Confidence 358999999988889999999999999999999875431 112222 235678999999999999999999999873
Q ss_pred cCCCccEEechhhHhhhhccchHhhh---------c---------CCCeEEecCCCEEEeccccCCeEEEEecCCCccCc
Q 004964 78 LGLSAPVFSTEPVYRLGLLTMYDQYL---------S---------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 139 (721)
Q Consensus 78 ~g~~~~Iy~T~pt~~l~~~~l~d~~~---------~---------~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs 139 (721)
+++++||+|.++..+.+..+.+... . ...+..+++++.+.+. ++++++++++||++|+
T Consensus 258 -~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~gH~~Gs 333 (636)
T 2ycb_A 258 -GYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIA---PDIRLTLHNAGHILGS 333 (636)
T ss_dssp -TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECCSSTTC
T ss_pred -CCCCeEEEcchHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEec---CCeEEEEeCCCCCCCc
Confidence 5679999999999887765544311 0 0136889999999985 6899999999999999
Q ss_pred eEEEEEECCe--EEEEEecCCCcCccccCcccccccCCCcEEEeeccccccc--CCCcchHH-HHHHHHHHHHhcCCeEE
Q 004964 140 TVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVL 214 (721)
Q Consensus 140 ~~~~I~~~~~--~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~e-~l~~~I~~~l~~gG~VL 214 (721)
++|.++.+++ +++||||++...+.++.++... +.++|+||+||||+... ++++...+ .|.+.+.++++.+|++|
T Consensus 334 ~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vl 412 (636)
T 2ycb_A 334 AMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANR-FPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKIL 412 (636)
T ss_dssp EEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCC-CSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCeEEEEEECCCCCCcccccCCcccC-CCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999999888 9999999999887777654322 46899999999999877 77777776 99999999999999999
Q ss_pred EeccCchHHHHHHHHHHHHHHhcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHH
Q 004964 215 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 293 (721)
Q Consensus 215 IP~~~~GR~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e 293 (721)
||+|++||+|||+.+|.++|+++.+ ++|||+++ ++.+++.+|+.+++||+..+.+.+.....+||.+++++.+.+.++
T Consensus 413 Ip~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 491 (636)
T 2ycb_A 413 IPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDE 491 (636)
T ss_dssp EECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHH
T ss_pred EEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceEEeCCHHH
Confidence 9999999999999999999998877 78999875 999999999999999999988777766789999999999998877
Q ss_pred HhccC-CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHH
Q 004964 294 LDNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIA 372 (721)
Q Consensus 294 ~~~~~-~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~ 372 (721)
+.++. ++|+|||||+|||++|+++++|++|++||+|+|||||||.+||+||+|.... ..+.
T Consensus 492 ~~~l~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g~--~~i~---------------- 553 (636)
T 2ycb_A 492 RREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGW--KEIP---------------- 553 (636)
T ss_dssp HHHHHHSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTTC--CEEE----------------
T ss_pred HHHhccCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcCC--ceee----------------
Confidence 77764 7899999999999999999999999999999999999999999999987320 0000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCC
Q 004964 373 YEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452 (721)
Q Consensus 373 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP 452 (721)
+
T Consensus 554 --------------------------------------------------------------~----------------- 554 (636)
T 2ycb_A 554 --------------------------------------------------------------L----------------- 554 (636)
T ss_dssp --------------------------------------------------------------E-----------------
T ss_pred --------------------------------------------------------------e-----------------
Confidence 0
Q ss_pred ccccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-ccccc
Q 004964 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRA 531 (721)
Q Consensus 453 ~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id-~~g~~ 531 (721)
.+.+|+ ...+.++|+|..++ ||||+
T Consensus 555 -------~~~~G~-----------------------------------------------~~~v~v~~~v~~i~~~SgHa 580 (636)
T 2ycb_A 555 -------KDEDDK-----------------------------------------------MRVYNVRMNIKTIEGFSGHS 580 (636)
T ss_dssp -------ECSSSC-----------------------------------------------EEEEECCSEEEECCSCCSSC
T ss_pred -------eccCCc-----------------------------------------------eeEEEeEEEEEEECCcceeC
Confidence 011111 12578999999999 99999
Q ss_pred CHHHHHHHhhhcC--CcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 532 DGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 532 D~rsl~~ii~~l~--PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
|++.|+.++..++ |+++|+|||+......|++.++..++.++++|.+||++++
T Consensus 581 d~~eL~~~i~~~~~~Pk~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 581 DRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635 (636)
T ss_dssp CHHHHHHHHHSCSSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred CHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEeCCCCCEEEe
Confidence 9999999999999 9999999999999999999987777889999999999975
No 6
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=1.5e-59 Score=547.30 Aligned_cols=425 Identities=23% Similarity=0.351 Sum_probs=343.1
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc---C-CCCCccEEEecCCchhhhCchHHHHHhc
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS---K-VASTIDAVLLSHPDTLHLGALPYAMKQL 78 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~---~-~~~~Id~IlLTH~H~DHiGgLp~L~~~~ 78 (721)
..|++++|||+++.|++||+|+.++.+||||||+........+..+. . ...+||+|||||+|.||+||+|+|.+.
T Consensus 182 ~~m~I~~LG~~~evg~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~- 260 (640)
T 2xr1_A 182 QWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY- 260 (640)
T ss_dssp CCCEEEEEECSSSSBCCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT-
T ss_pred CceEEEEEecCCCCCCcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHhc-
Confidence 35899999988888999999999999999999987532111222222 4 567899999999999999999999873
Q ss_pred CCCccEEechhhHhhhhccchHhhh---------c---------CCCeEEecCCCEEEeccccCCeEEEEecCCCccCce
Q 004964 79 GLSAPVFSTEPVYRLGLLTMYDQYL---------S---------RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 140 (721)
Q Consensus 79 g~~~~Iy~T~pt~~l~~~~l~d~~~---------~---------~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~ 140 (721)
+++++||+|.+|..+.+..+.++.. . ...+..+++++.+.+. ++++++++++||++|++
T Consensus 261 ~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~---gg~~v~~~~~GH~~Gs~ 337 (640)
T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIA---PDIKLTFHNAGHILGSA 337 (640)
T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECSSSTTCE
T ss_pred CCCCeEEECHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEec---CCEEEEEEcCCCCcCcE
Confidence 5679999999999887665544311 0 0136789999999984 68999999999999999
Q ss_pred EEEEEECCe--EEEEEecCCCcCccccCcccccccCCCcEEEeeccccccc--CCCcchHH-HHHHHHHHHHhcCCeEEE
Q 004964 141 VWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLL 215 (721)
Q Consensus 141 ~~~I~~~~~--~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~e-~l~~~I~~~l~~gG~VLI 215 (721)
+|.++.+++ +++||||++...+.++.++... +.++|+||+||||+... ++++.... .|.+.+.++++.+|+|+|
T Consensus 338 ~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlI 416 (640)
T 2xr1_A 338 ISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVI 416 (640)
T ss_dssp EEEEEETTTTEEEEECCSCCSSCCSSCCCCCCB-CSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEE
T ss_pred EEEEEECCceEEEEEECCCCCCCcccccccccc-CCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999888 9999999999887777654322 46899999999999877 77777766 999999999999999999
Q ss_pred eccCchHHHHHHHHHHHHHHhcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHH
Q 004964 216 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 294 (721)
Q Consensus 216 P~~~~GR~qEll~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~ 294 (721)
|+|++||.||++.+|.++|+++.+ ++|||+++ ++.+++.+|+.+++||+..+++.+...+.+||.+++++.+.+.+++
T Consensus 417 p~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 495 (640)
T 2xr1_A 417 PAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEAR 495 (640)
T ss_dssp ECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHH
T ss_pred EecccchHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCceEEeCCHHHH
Confidence 999999999999999999998877 78999876 9999999999999999999877665557899999999999987776
Q ss_pred hcc-C-CCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceeeecceEEecchhhHHH
Q 004964 295 DNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIA 372 (721)
Q Consensus 295 ~~~-~-~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~~~v~~~~~~~v~L~g~el~~ 372 (721)
.++ . ++|+|||||+|||++|+++++|++|++||+|+|||||||++||+||+|..... .|.+
T Consensus 496 ~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~--~i~~--------------- 558 (640)
T 2xr1_A 496 QKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWK--EIPM--------------- 558 (640)
T ss_dssp HHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCC--C------------------
T ss_pred HHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccc--eeee---------------
Confidence 665 3 78999999999999999999999999999999999999999999999874200 0000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCC
Q 004964 373 YEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 452 (721)
Q Consensus 373 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP 452 (721)
.
T Consensus 559 ---------------------------------------------------------------~---------------- 559 (640)
T 2xr1_A 559 ---------------------------------------------------------------T---------------- 559 (640)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------e----------------
Confidence 0
Q ss_pred ccccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-ccccc
Q 004964 453 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRA 531 (721)
Q Consensus 453 ~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~id-~~g~~ 531 (721)
+.+|+ ...+.|+|+|..++ ||||+
T Consensus 560 --------~~~G~-----------------------------------------------~~~v~v~~~v~~i~g~SgHa 584 (640)
T 2xr1_A 560 --------GKNGS-----------------------------------------------TEMLKMNMEVQVVDGFSGHS 584 (640)
T ss_dssp --------------------------------------------------------------CCCCCSEEEECCCCSCSC
T ss_pred --------ccCCC-----------------------------------------------ceEEeeeEEEEEEccccccC
Confidence 00000 01356889999999 99999
Q ss_pred CHHHHHHHhhhcC--CcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 532 DGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 532 D~rsl~~ii~~l~--PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
|++.|+.++..++ |+++|+|||+....+.|++.+++.++.++++|.+|+++.+
T Consensus 585 d~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 585 DRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRL 639 (640)
T ss_dssp CHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEEECCTTCEEEC
T ss_pred CHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCeEEeCCCCCEEEe
Confidence 9999999999999 9999999999999999999997777899999999999975
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=100.00 E-value=6.5e-43 Score=400.21 Aligned_cols=307 Identities=15% Similarity=0.189 Sum_probs=245.0
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc--------ccCccccCCCCCccEEEecCCchhhhCchHHH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~--------~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L 74 (721)
+.|++++|||.++.|+|||+++.++..||||||+...... ..+..+...+.+||+|||||+|.||+||+|++
T Consensus 7 ~~i~i~~lGg~~eiG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l 86 (555)
T 3zq4_A 7 DQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYL 86 (555)
T ss_dssp CSEEEEEEESBSSSSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHH
T ss_pred CcEEEEEcCCCCccCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHH
Confidence 4689999999999999999999999999999998432111 01233445678999999999999999999999
Q ss_pred HHhcCCCccEEechhhHhhhhccchHhhh-cCCCeEEecCCCEEEeccccCCeEEEEecCCC-ccCceEEEEEECCeEEE
Q 004964 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYL-SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-LLGGTVWKITKDGEDVI 152 (721)
Q Consensus 75 ~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~-~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH-~~Gs~~~~I~~~~~~Il 152 (721)
.+. +++|||+|.++..+.+..+.+.-. ....++.+++++.+.+ +++++++++++| ++|+++|.|+.++++++
T Consensus 87 ~~~--~~~pIy~t~~t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~i----g~~~v~~~~~~H~~pgs~~~~i~~~~~~il 160 (555)
T 3zq4_A 87 LRQ--VNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKF----RKTAVSFFRTTHSIPDSYGIVVKTPPGNIV 160 (555)
T ss_dssp HTT--CCCCEEECHHHHHHHHHHHHHHSTTTTCCEEECCTTCCEEE----TTEEEEEEEEBCSSSSEEEEEEEETTEEEE
T ss_pred HHh--cCceEEECHHHHHHHHHHHHHcCccCCCceEEeCCCCEEEE----CCEEEEEEeCCCCCcCcEEEEEEECCcEEE
Confidence 975 478999999999887765544321 2335889999999999 689999999988 89999999999999999
Q ss_pred EEecCCCcCccccCccccccc-----CCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhc-CCeEEEeccC--chHH
Q 004964 153 YAVDYNRRKEKHLNGTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA-GGNVLLPVDS--AGRV 223 (721)
Q Consensus 153 ytGD~~~~~~~~l~~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~-gG~VLIP~~~--~GR~ 223 (721)
||||+....+.....+++..+ .++|+||+||||+.... +...+ .+.+.+.+++++ +|.|+||+|+ +||+
T Consensus 161 ~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT~~~~~~--~~~se~~v~~~i~~~~~~~~grvii~~fasnv~R~ 238 (555)
T 3zq4_A 161 HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPE--FTMSERRVGESIHDIFRKVDGRIIFATFASNIHRL 238 (555)
T ss_dssp ECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECTTTTCCS--CCCCHHHHHHHHHHHHHHCCSCEEEECCTTCHHHH
T ss_pred EeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCcccCCCC--CCCCHHHHHHHHHHHHHhCCCEEEEEEChhHHHHH
Confidence 999999877654432333333 36899999999998543 22334 788888888875 8999999999 9999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCCCCcE
Q 004964 224 LELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 303 (721)
Q Consensus 224 qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~~p~V 303 (721)
|+++.++.++ +.||++.+++..++++.++.+ .|+. ++...++. .+++.++++++.|
T Consensus 239 q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~----------------~p~~~~v~-~~~~~~~~~~~~v 294 (555)
T 3zq4_A 239 QQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN----------------CPKNTFIE-HNEINRMPANKVT 294 (555)
T ss_dssp HHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC----------------CCGGGEEC-GGGTTTSCGGGEE
T ss_pred HHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc-CCcc----------------CCcccEeC-HHHHhhCCCCCEE
Confidence 9999999887 779999998889998888776 3332 12222443 5677777566778
Q ss_pred EEEcCCCCCcchHHHHHHHHcCCCCC--------eEEEecCCCCCChhH
Q 004964 304 VLASMASLEAGFSHDIFVEWASDVKN--------LVLFTERGQFGTLAR 344 (721)
Q Consensus 304 i~as~~~L~~G~s~~~l~~~~~~~~n--------~Iiltg~~~~gT~g~ 344 (721)
|++|++ .|..+.+|.+++.++.| +|||++++.||+.++
T Consensus 295 ii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~ 340 (555)
T 3zq4_A 295 ILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTIS 340 (555)
T ss_dssp EEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHH
T ss_pred EEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHH
Confidence 888877 48889999999999888 999999999998754
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=100.00 E-value=3.5e-40 Score=379.13 Aligned_cols=308 Identities=15% Similarity=0.160 Sum_probs=229.2
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc--------ccCccccCCCCCccEEEecCCchhhhCchHHH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~--------~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L 74 (721)
..|++++|||+++.|+|||+|+.++..||||||+...... ..+..+.....+||+|||||+|.||+||+|+|
T Consensus 15 ~~~~i~~LGg~~eig~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L 94 (562)
T 3bk2_A 15 DHVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFL 94 (562)
T ss_dssp CCEEEEEEESBSBSSCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHH
T ss_pred CcEEEEEecCCCCcCCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHH
Confidence 5699999999898899999999999999999997532111 11222334567899999999999999999999
Q ss_pred HHhcC---CCccEEechhhHhhhhccchHhhhc--CCCeEEecCCCEEEeccccCC-eEEEEecCCC-ccCceEEEEEEC
Q 004964 75 MKQLG---LSAPVFSTEPVYRLGLLTMYDQYLS--RRSVTRLTYSQNYHLSGKGEG-IVVAPHVAGH-LLGGTVWKITKD 147 (721)
Q Consensus 75 ~~~~g---~~~~Iy~T~pt~~l~~~~l~d~~~~--~~~i~~v~y~q~~~l~~~~~g-l~it~~~aGH-~~Gs~~~~I~~~ 147 (721)
.+.+. .++|||+|.+|..+.+..+.+.-.. ...++.+++++.+.+ ++ +++++++++| ++|+++|.|+.+
T Consensus 95 ~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~l----g~~~~v~~~~~~H~~~gs~~~~i~~~ 170 (562)
T 3bk2_A 95 LPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQV----GRYFTLDLFRMTHSIPDNSGVVIRTP 170 (562)
T ss_dssp HHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEE----TTTEEEEEEECCCSSSSCEEEEEEET
T ss_pred HHhhccccCCceEEeCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEe----CCCEEEEEEECCCCCcccEEEEEEEC
Confidence 98541 1589999999998776544332111 234788999999999 46 9999999999 799999999999
Q ss_pred CeEEEEEecCCCcCccccC-ccccccc-----CCCcEEEeecccccccCCCcchHH-HHHHHHHHHHh-cCCeEEEeccC
Q 004964 148 GEDVIYAVDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR-AGGNVLLPVDS 219 (721)
Q Consensus 148 ~~~IlytGD~~~~~~~~l~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~-~gG~VLIP~~~ 219 (721)
+++++||||+......+.. ..++..+ .++|+||+|+||....... ..+ .+.+.+.++++ .+|.+++|+|+
T Consensus 171 ~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~--~~e~~v~~~l~~~~~~~~grvii~~fa 248 (562)
T 3bk2_A 171 IGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYT--PSEMEIAKELDRVIGRAPGRVFVTTFA 248 (562)
T ss_dssp TEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCC--CCHHHHHHHHHHHHHHCSSCEEEECCT
T ss_pred CeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecccCCCCCCCC--ChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 9999999999987654431 1222211 3689999999998543322 122 56666767665 67999999999
Q ss_pred --chHHHHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhcc
Q 004964 220 --AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297 (721)
Q Consensus 220 --~GR~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~ 297 (721)
++|+|+++.++.++ ..||++++....++++.|+.. +|++. .++| + +.+++.++
T Consensus 249 s~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~l~~----------~~~~-------i-~~~~~~~~ 303 (562)
T 3bk2_A 249 SHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GYLKV----------KDRL-------Y-TLEEVKDL 303 (562)
T ss_dssp TCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TSCCC----------SSCC-------B-CTGGGTTS
T ss_pred ccchHHHHHHHHHHHh------CCEEEEEChHHHHHHHHHHhc-CcccC----------CCCc-------c-CHHHHhcC
Confidence 99999999998776 568998776667888887754 56542 2443 2 23456666
Q ss_pred CCCCcEEEEcCCCCCcchHHHHHHHHcC--------CCCCeEEEecCCCCCChhH
Q 004964 298 PDGPKLVLASMASLEAGFSHDIFVEWAS--------DVKNLVLFTERGQFGTLAR 344 (721)
Q Consensus 298 ~~~p~Vi~as~~~L~~G~s~~~l~~~~~--------~~~n~Iiltg~~~~gT~g~ 344 (721)
.++++||++|+++ |.....+.+|+. +|+|+|||++|+.+||.++
T Consensus 304 ~~~~~vi~~tg~~---ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~ 355 (562)
T 3bk2_A 304 PDHQVLILATGSQ---GQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEA 355 (562)
T ss_dssp CGGGEEEEECCTT---SCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHH
T ss_pred CCCCEEEEEcCCC---chhHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEe
Confidence 4445666776554 444456788775 8999999999999999764
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=100.00 E-value=2.1e-33 Score=313.19 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=203.8
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCC-----cc--------cCcc---------------ccCCCCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-----PS--------LLQP---------------LSKVAST 54 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~-----~~--------~l~~---------------l~~~~~~ 54 (721)
.+|++++|||+++.|+|||+|+.++..||||||...... .. .+.. +.....+
T Consensus 5 ~~m~i~~lG~~~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~ 84 (429)
T 2az4_A 5 AKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQ 84 (429)
T ss_dssp CCEEEEEEECTTSSSCCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCS
T ss_pred CceEEEEeeCCCccCCeEEEEEECCeEEEEecCCCCCcccCCCcchhhhccCCcccCCchhhhcccccccchhhhhcccc
Confidence 459999999888889999999999999999999864210 00 0111 1345678
Q ss_pred ccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHh--h--------hcCCCeEEecCCCEEEeccccC
Q 004964 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ--Y--------LSRRSVTRLTYSQNYHLSGKGE 124 (721)
Q Consensus 55 Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~--~--------~~~~~i~~v~y~q~~~l~~~~~ 124 (721)
|++|||||+|.||+||+|+|.+ +++||++..+..+.+.+..+. + .....++.+++++.+.+ +
T Consensus 85 i~~v~lTH~H~DHiggl~~l~~----~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g 156 (429)
T 2az4_A 85 HTAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKV----G 156 (429)
T ss_dssp EEEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEE----T
T ss_pred CCEEEECCchHHHhCcHhHhcC----CCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEEE----C
Confidence 9999999999999999999864 589999999988765432211 0 01234788999999999 6
Q ss_pred CeEEEEecCCC-ccCceEEEEEECCeEEEEEecCCCcCccccC-cccccccCCCcEEEeecccccccC------CCcchH
Q 004964 125 GIVVAPHVAGH-LLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLESFVRPAVLITDAYNALHNQ------PPRQQR 196 (721)
Q Consensus 125 gl~it~~~aGH-~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~-~~~l~~l~~~d~LI~est~~~~~~------~~r~~~ 196 (721)
+++|++++++| ++|+++|.|+.++++++||||+.......-. ........++|+||+||||..... +.....
T Consensus 157 ~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~~~~~~~~s 236 (429)
T 2az4_A 157 EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVS 236 (429)
T ss_dssp TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCCTTBCCCCS
T ss_pred CEEEEEEECCCCChhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCcccccccccCCCCCC
Confidence 89999999999 8999999999999999999999865432100 000111247999999999987321 111222
Q ss_pred H-HHHHHHHHHHhcC-CeEEEeccC---chHHHHHHHHHHHHHHhcCCCccEEEEccchHHHHHHHHHHHhhhCHHHHHH
Q 004964 197 E-MFQDAISKTLRAG-GNVLLPVDS---AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 271 (721)
Q Consensus 197 e-~l~~~I~~~l~~g-G~VLIP~~~---~GR~qEll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~ 271 (721)
+ .+.+.+.++++++ +.++||.+. .+|+|++ +.+. +.|||+.++++..+++.+.....++....
T Consensus 237 ~~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~---a~~~------gr~v~~~g~~~~~~~~~~~~~~~~~~~~~--- 304 (429)
T 2az4_A 237 EEDLVQHLVRLELENPNRQITFNGYPANVERFAKI---IEKS------PRTVVLEANMAALLLEVFGIEVRYYYAES--- 304 (429)
T ss_dssp HHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHH---HHHC------SSEEEEEHHHHHHHHHHHCCCCEEECSSS---
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHH---HHHh------CCEEEEEChhHHHHHhhccccCeeEeccc---
Confidence 3 7777788877764 558888887 7888888 2222 56999999988877776422222221100
Q ss_pred HHhcCCCCCCCCCeEEcCChHHHhccCCCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCCh
Q 004964 272 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 342 (721)
Q Consensus 272 ~~~~~~~PF~~~~~~~~~s~~e~~~~~~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~ 342 (721)
.....+ +. ..+.+.+++.++ ++++||+ | +|.- . ++ .++++|||++++.+|+.
T Consensus 305 ---~~~~~~--~~-~~~~~~~~~~~~-~~~~ii~----~--~~~~--~--~l--~~~~~vi~s~~~~~g~~ 356 (429)
T 2az4_A 305 ---GKIPEL--NP-ALEIPYDTLLKD-KTDYLWQ----V--VNQF--D--NL--QEGSLYIHSDAQPLGDF 356 (429)
T ss_dssp ---SCCTTS--CG-GGBCCHHHHHHC-SSSEEEE----C--CSCG--G--GS--CTTCEEEEESCSSCSTT
T ss_pred ---cccccc--Cc-cceecHHHHhhC-CCcEEEE----e--cCcH--H--hh--CCCCEEEEeCCCCCccc
Confidence 000001 11 113345666666 5666555 2 3431 1 33 34589999999988874
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=232.55 Aligned_cols=210 Identities=16% Similarity=0.153 Sum_probs=153.9
Q ss_pred eEEEEEeecCCCC-CCcE-EEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCC
Q 004964 4 SVQVTPLSGVFNE-NPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (721)
Q Consensus 4 ~m~~t~lgG~~~~-g~s~-~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~ 81 (721)
.|+|..-.|+... .+.| +++..+|..|+||+... ....+||+|||||+|.||+||++. .++
T Consensus 11 ~~~~~~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~------------~~~~~IdaI~lTH~H~DHiggl~~-----~~~ 73 (367)
T 4b87_A 11 NKKIPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQY------------GVVEGCTAYFLTHFHSDHYAGLSK-----HFT 73 (367)
T ss_dssp ------------CCCCCCCGGGBCTTSSEEESCCSS------------SSCTTCCEEECCCCCHHHHTTCST-----TCC
T ss_pred hhcccccccCCCCCCCCCceEEEECCCeEEEeCCCc------------CCccCCcEEEECcChHHHhCCccc-----ccC
Confidence 3566664444443 3444 45567889999998521 134689999999999999999993 347
Q ss_pred ccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE-CCeEEEEEecCCCc
Q 004964 82 APVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRR 160 (721)
Q Consensus 82 ~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~-~~~~IlytGD~~~~ 160 (721)
+|||+|..|..+.+..+.. ....++++++++.+.+ ++++|+++++||++|+++|.|+. ++.+++||||+...
T Consensus 74 ~pIy~s~~t~~ll~~~l~~---~~~~~~~l~~g~~~~i----g~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~ 146 (367)
T 4b87_A 74 FPVYCSEITGNLLKNKLHV---QEQYIHPLPLDTECIV----NGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRAD 146 (367)
T ss_dssp SCEEECHHHHHHHHHHSCC---CGGGEEECCBTSCEEE----TTEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCC
T ss_pred CcEEECHHHHHHHHHHhcc---ccceEEEeCCCCEEEE----CCEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccC
Confidence 8999999999876543211 1124788999999999 79999999999999999999987 45579999999987
Q ss_pred CccccCcccccccCCCcEEEeeccccccc--CCCcchHH-HHHHHHHHHHhcCCeE--EEeccCchHHHHHHHHHHHHHH
Q 004964 161 KEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNV--LLPVDSAGRVLELLLILEDYWA 235 (721)
Q Consensus 161 ~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~e-~l~~~I~~~l~~gG~V--LIP~~~~GR~qEll~~L~~~~~ 235 (721)
++... ..+.. .++|+||+|+||+... +|++++.. .+++.+.++++.+|.+ ++|+|++||.|+++.++.++
T Consensus 147 ~~~~~--~~l~~-~~~D~Li~EsTy~~~~~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~-- 221 (367)
T 4b87_A 147 PSMER--SLLAD-QKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVL-- 221 (367)
T ss_dssp GGGGG--SGGGT-SCCCEEEECCTTCSTTCCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHT--
T ss_pred cccch--hhhcc-CCCCEEEEecccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh--
Confidence 75432 22211 4789999999999855 35666655 6888888888766654 57999999999999999987
Q ss_pred hcCCCccEEEE
Q 004964 236 EHSLNYPIYFL 246 (721)
Q Consensus 236 ~~~l~~pI~~~ 246 (721)
+.+|++.
T Consensus 222 ----g~ki~v~ 228 (367)
T 4b87_A 222 ----GSKVGMS 228 (367)
T ss_dssp ----TCCEECC
T ss_pred ----CCEEEEe
Confidence 7899854
No 11
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=213.97 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=138.6
Q ss_pred CCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEecc---ccCCeEEE
Q 004964 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSG---KGEGIVVA 129 (721)
Q Consensus 53 ~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~---~~~gl~it 129 (721)
.+|++|||||+|.||+||+|+++ ++|||||..|..+.+..+.. ....+.++++++.+.+.+ ..++++++
T Consensus 23 ~~i~ai~lTH~H~DHiggl~~l~-----~~pVy~s~~t~~ll~~~l~~---~~~~~~~~~~~~~~~i~~~~~~~g~~~v~ 94 (336)
T 3zdk_A 23 GTARLFFLSHMHSDHTVGLSSTW-----ARPLYCSPITAHLLHRHLQV---SKQWIQALEVGESHVLPLDEIGQETMTVT 94 (336)
T ss_dssp CSSCEEECCCCCGGGSTTCSTTC-----CSCEEECHHHHHHHHHHHCC---CTTTEEECCTTSEEEEESSSSSSCEEEEE
T ss_pred CCCCEEEECCChHHHHCchHHHc-----CCCEEecHHHHHHHHHhhhh---cccceEecCCCCeEEecCcccccCCEEEE
Confidence 48999999999999999999974 58999999999887653321 122478889999887621 12689999
Q ss_pred EecCCCccCceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccC--CCcchHH-HHHHHHHHH
Q 004964 130 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ--PPRQQRE-MFQDAISKT 206 (721)
Q Consensus 130 ~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~--~~r~~~e-~l~~~I~~~ 206 (721)
++++||++|+++|.|+.++++|+||||++..++..... .+....++|+||+||||+.... +++.+.. .+.+.+.++
T Consensus 95 ~~~~~H~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~-~l~~~~~vD~Li~DsT~~~~~~~~pse~~v~~~l~~~i~~~ 173 (336)
T 3zdk_A 95 LLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-ALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRKH 173 (336)
T ss_dssp EEECSSSTTCEEEEEEETTEEEEECCSCCCCGGGGGCG-GGSSCCCCSEEEECCTBCCTTCCCCCHHHHHHHHHHHHHTC
T ss_pred EEECCCCcceEEEEEEeCCceEEEeCCCCCCcccccch-hhhccCCccEEEEecCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998876543322 2222467999999999998654 3444433 555554443
Q ss_pred HhcCCeEEEeccCchHHHHHHHHHHHHHHhcCCCccEEEEc
Q 004964 207 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLT 247 (721)
Q Consensus 207 l~~gG~VLIP~~~~GR~qEll~~L~~~~~~~~l~~pI~~~s 247 (721)
.||.|+||+|++||.|+++.+..++ +.+|++..
T Consensus 174 --~~g~vii~~f~vgR~q~i~~~a~~~------grkV~v~g 206 (336)
T 3zdk_A 174 --PQHNIKIGLYSLGKESLLEQLALEF------QTWVVLSP 206 (336)
T ss_dssp --TTSEEEEEECSSSCHHHHHHHHHHH------TCCEECCH
T ss_pred --CCCcEEEeecchHHHHHHHHHHHHc------CCEEEEEh
Confidence 3679999999999999999999887 78899764
No 12
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.79 E-value=8.9e-19 Score=182.30 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=127.2
Q ss_pred CeEEEEEeecCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHh
Q 004964 3 TSVQVTPLSGVFNE-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (721)
Q Consensus 3 ~~m~~t~lgG~~~~-----g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~ 77 (721)
..|++++||+++.. +.+|++|+.++..||||||... ...+... ..+.+||+|||||.|.||+||++.+...
T Consensus 23 ~~m~i~~LG~g~~~p~~~~~~~~~li~~~~~~iLiD~G~~~---~~~l~~~-~~~~~i~~v~iTH~H~DH~~gl~~l~~~ 98 (268)
T 1zkp_A 23 NAMKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGV---LAQLQKY-ITPSDIDAVVLSHYHHDHVADIGVLQYA 98 (268)
T ss_dssp SCEEEEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTH---HHHHTTT-CCGGGCCEEECSCCCHHHHTTHHHHHHH
T ss_pred CCcEEEEEeCCCCcCCCCCCccEEEEEECCcEEEEECCHHH---HHHHHHh-CCcccCCEEEEecCCchhhCCHHHHHHH
Confidence 35899999765543 5899999999999999999642 1122222 3456899999999999999999988764
Q ss_pred --c-------CCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECC
Q 004964 78 --L-------GLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 148 (721)
Q Consensus 78 --~-------g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~ 148 (721)
+ ...++||++..+.+..+... +.....+..++.++.+.+ ++++|+++++.|++|+++|+|+.++
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~~~~~~~~~~~~g~~~~~----g~~~v~~~~~~H~~~~~~~~i~~~~ 171 (268)
T 1zkp_A 99 RLITSATKGQLPELPIYGHTFDENGFHSLT---HEPHTKGIPYNPEETLQI----GPFSISFLKTVHPVTCFAMRITAGN 171 (268)
T ss_dssp HHHHHHHHCCCCCEEEEECSSSHHHHHTTC---BTTTEEEEECCTTSCEEE----TTEEEEEEECCSSSCCEEEEEEETT
T ss_pred HHhcccccCCCCceEEEeCccHHHHHHhcc---cCCccceEEecCCCeEEE----CCEEEEEEECCCCCCceEEEEEECC
Confidence 1 22579999988876544321 111123567788888888 6899999999999999999999999
Q ss_pred eEEEEEecCCCcCccccCcccccccCCCcEEEeeccccc
Q 004964 149 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187 (721)
Q Consensus 149 ~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 187 (721)
.+++|+||+...++ + ...+.++|+||+|+++..
T Consensus 172 ~~i~~~GD~~~~~~-~-----~~~~~~~d~li~e~~~~~ 204 (268)
T 1zkp_A 172 DIVVYSADSSYIPE-F-----IPFTKDADLFICECNMYA 204 (268)
T ss_dssp EEEEECCSCCCCTT-H-----HHHHTTCSEEEEECCBCT
T ss_pred eEEEEeCCCCCCHH-H-----HHHHcCCCEEEEECCCCc
Confidence 99999999987543 1 111357999999999865
No 13
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.78 E-value=1e-18 Score=181.05 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=124.0
Q ss_pred eEEEEEeecCCCC-----------------------CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEe
Q 004964 4 SVQVTPLSGVFNE-----------------------NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60 (721)
Q Consensus 4 ~m~~t~lgG~~~~-----------------------g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlL 60 (721)
.|++++||.+++. +++|++|+.++..||||||... ....+ ...+||+|||
T Consensus 2 ~~~~~~LGtg~~~g~P~~~c~C~~C~~ar~~~~~~r~~s~~li~~~~~~iLiD~G~~~-----~~~~~--~~~~id~Ili 74 (258)
T 3g1p_A 2 SLTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHD-----LADRW--SPGSFQQFLL 74 (258)
T ss_dssp CEEEEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEETTEEEEECCCCTT-----HHHHC--CTTSSCEEEC
T ss_pred ceEEEEEEeCCCCCCccCCcCChhhhhhhhCccccccCceEEEEECCcEEEEECCchH-----HHhhc--CcccCCEEEE
Confidence 4899999776433 5789999999999999999421 11111 2358999999
Q ss_pred cCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCC-eEEecCCCEEEeccccCCeEEEEecCCCccCc
Q 004964 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRS-VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 139 (721)
Q Consensus 61 TH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~-i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs 139 (721)
||.|.||++|++.+....+...+||++..+..+...+-. ..... ...++.++.+.+ ++++|+++++.|++|+
T Consensus 75 TH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~----g~~~v~~~~~~H~~~~ 147 (258)
T 3g1p_A 75 THYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKH---PGLLDFSHTVEPFVVFDL----QGLQVTPLPLNHSKLT 147 (258)
T ss_dssp SCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCSTTTTTS---CTTEEEEEECCTTCCEEE----TTEEEEEEECCSSSCC
T ss_pred ccCchhHhCCHHHHhccCCCCeEEEeChhhhhHHHHhcC---CCccccccccCCCCeEEE----CCEEEEEEECCCCCCc
Confidence 999999999999886433335889999887632221100 00111 257888999998 7999999999999999
Q ss_pred eEEEEEECCeEEEEEecCCCcCccccCccccccc--CCCcEEEeecccccc
Q 004964 140 TVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALH 188 (721)
Q Consensus 140 ~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l--~~~d~LI~est~~~~ 188 (721)
++|+|+.++.+++|+||+...++..+. .+ .++|+||+|++|...
T Consensus 148 ~g~~i~~~~~~i~~~GDt~~~~~~~~~-----~l~~~~~Dlli~e~t~~~~ 193 (258)
T 3g1p_A 148 FGYLLETAHSRVAWLSDTAGLPEKTLK-----FLRNNQPQVMVMDCSHPPR 193 (258)
T ss_dssp EEEEEECSSCEEEEECSCSSCCHHHHH-----HHHHTCCSEEEEECCBSSC
T ss_pred eEEEEEeCCcEEEEECCCCCCCHHHHH-----HHHhCCCCEEEEeCCCCCc
Confidence 999999888999999999986643221 12 478999999998764
No 14
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.78 E-value=2.1e-18 Score=182.75 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=127.1
Q ss_pred EEEEEeecCCCC-----CCcEEEEEE----CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHH
Q 004964 5 VQVTPLSGVFNE-----NPLSYLVSI----DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (721)
Q Consensus 5 m~~t~lgG~~~~-----g~s~~ll~~----~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~ 75 (721)
|++++||++++. +.+|++|+. ++.+||||||... ...+...+....+||+|||||.|.||++|++.+.
T Consensus 2 m~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~---~~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~ 78 (306)
T 2cbn_A 2 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLL 78 (306)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTH---HHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHH
T ss_pred eEEEEEEcCCCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHH---HHHHHHhCCCHHHcCEEEEecCCchhhCChHHHH
Confidence 699999877664 469999998 8889999999632 1223333345678999999999999999999887
Q ss_pred Hhc---C--CCccEEechhhHhhhhccchHhhh--c-CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE-
Q 004964 76 KQL---G--LSAPVFSTEPVYRLGLLTMYDQYL--S-RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK- 146 (721)
Q Consensus 76 ~~~---g--~~~~Iy~T~pt~~l~~~~l~d~~~--~-~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~- 146 (721)
... + ..++||++..+..+.+..+..... . ...++.++.++.+.+ ++++|+++++-|..++.+|.++.
T Consensus 79 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~v~~~~~~H~~~~~gy~i~~~ 154 (306)
T 2cbn_A 79 CSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDD----GLRKVTAYPLEHPLECYGYRIEEH 154 (306)
T ss_dssp HHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEEC----SSEEEEEEECBSSSCCEEEEEEEC
T ss_pred HHHHhcCCCCCeEEEcCccHHHHHHHHHHhhccCCCceEEEEEcCCCcEeec----CCEEEEEEEccCCCCccEEEEEec
Confidence 632 1 256899999988766543321110 0 013567777778877 68999999999999999999974
Q ss_pred -------------------------------------------------CCeEEEEEecCCCcCccccCcccccccCCCc
Q 004964 147 -------------------------------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 177 (721)
Q Consensus 147 -------------------------------------------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d 177 (721)
++.+|+|+||++..+. + .+.+.++|
T Consensus 155 ~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~sgDt~~~~~-~-----~~~~~~~D 228 (306)
T 2cbn_A 155 DAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-A-----LDLAKGVD 228 (306)
T ss_dssp CCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCST-H-----HHHHTTCS
T ss_pred CccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEEeCCCCCHHH-H-----HHHhcCCC
Confidence 4678999999998652 1 12235799
Q ss_pred EEEeecccccc
Q 004964 178 VLITDAYNALH 188 (721)
Q Consensus 178 ~LI~est~~~~ 188 (721)
+||+|++|...
T Consensus 229 ~li~E~t~~~~ 239 (306)
T 2cbn_A 229 VMVHEATLDIT 239 (306)
T ss_dssp EEEEECCBCGG
T ss_pred EEEEECcCChh
Confidence 99999999763
No 15
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.77 E-value=1.1e-18 Score=186.45 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=125.9
Q ss_pred EEEEEeecCCCC-----CCcEEEEEE---CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHH
Q 004964 5 VQVTPLSGVFNE-----NPLSYLVSI---DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (721)
Q Consensus 5 m~~t~lgG~~~~-----g~s~~ll~~---~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~ 76 (721)
|++++||++++. +.+||+|+. ++.+||||||... ...+...+....+||+|||||.|.||++|++.+..
T Consensus 1 M~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~---~~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~ 77 (320)
T 1y44_A 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEAT---QHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLG 77 (320)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTH---HHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHH
T ss_pred CEEEEEecCCCCCCccCCCCEEEEEEecCCCcEEEEECCHHH---HHHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHH
Confidence 489999877654 579999999 8899999999632 11222233345689999999999999999999876
Q ss_pred hc---C--CCccEEechhhHhhhhccchHhhh--c-CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE--
Q 004964 77 QL---G--LSAPVFSTEPVYRLGLLTMYDQYL--S-RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-- 146 (721)
Q Consensus 77 ~~---g--~~~~Iy~T~pt~~l~~~~l~d~~~--~-~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~-- 146 (721)
.+ + ..++||++..+..+.+..+..... . ...+..++.++.+.+ ++++|++++++|..++.+|.++.
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~v~~~p~~H~~~~~gy~i~~~~ 153 (320)
T 1y44_A 78 SRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFED----DQFIVTAVSVIHGVEAFGYRVQEKD 153 (320)
T ss_dssp HHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEEC----SSEEEEEEECBSSSSBEEEEEEECC
T ss_pred HHHhcCCCCCEEEEeCHHHHHHHHHHHHhhccCCCCceEEEEcCCCceEec----CCEEEEEEEccCCCCcceEEEecCC
Confidence 43 1 257899999988765533211100 0 112566777778877 68999999999999999999974
Q ss_pred ------------------------------------------------CCeEEEEEecCCCcCccccCcccccccCCCcE
Q 004964 147 ------------------------------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 178 (721)
Q Consensus 147 ------------------------------------------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~ 178 (721)
++.+++|+||++..+. + .+.+.++|+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g~~i~~sgDt~~~~~-~-----~~~~~~~D~ 227 (320)
T 1y44_A 154 VPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDK-L-----KELARDCDV 227 (320)
T ss_dssp BCCCC--------------------------------------CCCCBCCCEEEECCSCBCCHH-H-----HHHTTTCSE
T ss_pred CcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCCCEEEEeCCCCCHHH-H-----HHHhCCCCE
Confidence 4678999999987652 1 122357999
Q ss_pred EEeecccccc
Q 004964 179 LITDAYNALH 188 (721)
Q Consensus 179 LI~est~~~~ 188 (721)
||+|++|...
T Consensus 228 li~E~t~~~~ 237 (320)
T 1y44_A 228 MVHEATFAKE 237 (320)
T ss_dssp EEEECCBCTT
T ss_pred EEEeccCCcc
Confidence 9999999763
No 16
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.70 E-value=1.1e-16 Score=168.98 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=120.4
Q ss_pred CeEEEEEeecCCCCC---------------------CcEEEEEE--C-C--eEEEEeCCCCCCCCcccCccccCCCCCcc
Q 004964 3 TSVQVTPLSGVFNEN---------------------PLSYLVSI--D-G--FNFLIDCGWNDHFDPSLLQPLSKVASTID 56 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g---------------------~s~~ll~~--~-~--~~ILiDcG~~~~~~~~~l~~l~~~~~~Id 56 (721)
..|++++||.+.+.| ++|++|+. + + ..||||||.... ..+. .....+||
T Consensus 27 ~~m~v~~LG~g~~~G~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~g~~~~iLID~G~~~~---~~l~--~~~~~~id 101 (293)
T 3md7_A 27 NCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFR---MQMI--DSGVHMLD 101 (293)
T ss_dssp SEEEEEEEECBCTTCBSCTTCCCTTSCTTCGGGCBCBCEEEEEEECTTCCEEEEEECCCTTHH---HHHH--HHTCCCCS
T ss_pred CcEEEEEEeecCCCCcccCCCCCccCCccCCCCcccccEEEEEecCCCCceeEEEEECCccHH---HHHH--hcCCCccc
Confidence 459999997555322 38899996 3 4 799999995321 1121 22346899
Q ss_pred EEEecCCchhhhCchHHHHHhc---CCCccEEechhhHhhhhccchHhhhc--------CCCeEEecCCCEEEeccccCC
Q 004964 57 AVLLSHPDTLHLGALPYAMKQL---GLSAPVFSTEPVYRLGLLTMYDQYLS--------RRSVTRLTYSQNYHLSGKGEG 125 (721)
Q Consensus 57 ~IlLTH~H~DHiGgLp~L~~~~---g~~~~Iy~T~pt~~l~~~~l~d~~~~--------~~~i~~v~y~q~~~l~~~~~g 125 (721)
+|||||.|.||++|++.|...+ ....+||++..+.+..+..+...+.. ...++.++.++.+.+ ++
T Consensus 102 ~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~----g~ 177 (293)
T 3md7_A 102 AAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSI----EG 177 (293)
T ss_dssp EEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCTTCCCCCCEEEEECCTTCCEEE----CC
T ss_pred EEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhccccccCCCCceEEEEcCCCCcEEE----CC
Confidence 9999999999999999876522 34789999999887655433222211 113677888899998 46
Q ss_pred ----eEEEEecCCCc-cCceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeeccccc
Q 004964 126 ----IVVAPHVAGHL-LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187 (721)
Q Consensus 126 ----l~it~~~aGH~-~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 187 (721)
++|+++++.|. .++++|+|+ +++|+||+....+.++ +.+.++|+||+|+++..
T Consensus 178 ~~~~~~v~~~~~~H~~~~~~g~~i~----~~~y~gDt~~~~~~~~-----~~~~~~Dlli~e~~~~~ 235 (293)
T 3md7_A 178 AGGAIRFEPFSQVHGDIESLGFRIG----SVVYCTDVSAFPEQSL-----QYIKDADVLIIGALQYR 235 (293)
T ss_dssp TTCCEEEEEEEEEETTEEEEEEEET----TEEEECSCSBCCGGGH-----HHHTTCSEEEEECCCSS
T ss_pred CCCcEEEEEEEecCCCCCEEEEEEe----EEEEECCCCCCCHHHH-----HHhcCCCEEEEeCccCC
Confidence 99999999998 699999995 8999999986443222 22457999999997543
No 17
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=178.05 Aligned_cols=176 Identities=16% Similarity=0.137 Sum_probs=119.8
Q ss_pred EEEEEeecCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 5 VQVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 5 m~~t~lgG~~~-----~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
|++++||.++. .+.+||+|+.++..||||||... ...+........+||+|||||.|.||++|++.|...++
T Consensus 1 M~l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~---~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~ 77 (368)
T 3zwf_A 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGT---QTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTIS 77 (368)
T ss_dssp CEEEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTH---HHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhH---HHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhh
Confidence 58999975553 26899999999999999999521 11222233445689999999999999999998876432
Q ss_pred ---------CCccEEechhhHhhhhccchHhhhcCC----CeEEecC---------------------------CCEEEe
Q 004964 80 ---------LSAPVFSTEPVYRLGLLTMYDQYLSRR----SVTRLTY---------------------------SQNYHL 119 (721)
Q Consensus 80 ---------~~~~Iy~T~pt~~l~~~~l~d~~~~~~----~i~~v~y---------------------------~q~~~l 119 (721)
...+||++..+....+..+... ..+. .++.+.. ++.+.+
T Consensus 78 ~~~~~~~~~~~l~iygp~~~~~~l~~~l~~~-~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 156 (368)
T 3zwf_A 78 LQSGSMVSKQPIEIYGPVGLRDFIWRTMELS-HTELVFHYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILL 156 (368)
T ss_dssp HHC------CCEEEEEETTHHHHHHHHHHHT-TCCCSSCEEEEEECCCGGGSCC-------------------CCCEECC
T ss_pred hccccccCCCCeEEEEcHHHHHHHHHHHHhh-CcCCCceEEEEEeecCccccccccccccccccccccCccccccccccc
Confidence 1578999999887665432211 1110 1333322 222221
Q ss_pred c--------cccCCeEEEEecCCCccCceEEEEEEC--------------------------------------------
Q 004964 120 S--------GKGEGIVVAPHVAGHLLGGTVWKITKD-------------------------------------------- 147 (721)
Q Consensus 120 ~--------~~~~gl~it~~~aGH~~Gs~~~~I~~~-------------------------------------------- 147 (721)
. -..++++|+++++.|...+++|.|+..
T Consensus 157 ~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~G~~v~~~dG~~i~~~~v 236 (368)
T 3zwf_A 157 DSEENSYLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDV 236 (368)
T ss_dssp BTTTTBEEEEECSSEEEEEEEEESSSCEEEEEEEECC-------------------------------------------
T ss_pred ccccCceeEEeCCCEEEEEEeccCCCceEEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCCCCeEEecCCEEEEhHHh
Confidence 0 012689999999999999999999754
Q ss_pred ------CeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 148 ------GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 148 ------~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
+.+|+|+||+..... ......+..+|+||+|++|...
T Consensus 237 ~~~~~~g~~v~~~GDT~~~~~----~~~~~~~~~~Dlli~Eat~~~~ 279 (368)
T 3zwf_A 237 LKKPIVGRKICILGDCSGVVG----DGGVKLCFEADLLIHEATLDDA 279 (368)
T ss_dssp -----CCCEEEEECSCSEECS----SHHHHHTTTCSEEEEECCSCGG
T ss_pred ccccccceEEEEEecCCcccc----hhHHHHhcCCCEEEEecCCChH
Confidence 678999999876111 1111224579999999998874
No 18
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.69 E-value=2.3e-16 Score=164.54 Aligned_cols=151 Identities=16% Similarity=0.037 Sum_probs=107.4
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHH----hcC---CCccEEechhh
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK----QLG---LSAPVFSTEPV 90 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~----~~g---~~~~Iy~T~pt 90 (721)
.+|+++ ++..||||||.... ..+.....+|++|||||.|.||++|++.|.. .++ ..++||++..+
T Consensus 12 ~~~~~i--~~~~iLiD~G~~~~------~~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~ 83 (280)
T 2e7y_A 12 STWIYY--SPERILFDAGEGVS------TTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGN 83 (280)
T ss_dssp EEEEEE--GGGTEEEEECTTHH------HHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTC
T ss_pred eEEEEE--CCcEEEEECCcchH------HHhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccH
Confidence 355555 57889999996321 1233345689999999999999999999852 122 24799999888
Q ss_pred HhhhhccchHh--hh----cCCCeEEecCCCEEEeccccC----CeEEEEecCCCccC--ceEEEEEE------------
Q 004964 91 YRLGLLTMYDQ--YL----SRRSVTRLTYSQNYHLSGKGE----GIVVAPHVAGHLLG--GTVWKITK------------ 146 (721)
Q Consensus 91 ~~l~~~~l~d~--~~----~~~~i~~v~y~q~~~l~~~~~----gl~it~~~aGH~~G--s~~~~I~~------------ 146 (721)
. ..+..+... .. ....+..++.++.+.+. + +++|++++++|++| +++|+|+.
T Consensus 84 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g---~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~~l~~~~~g~ 159 (280)
T 2e7y_A 84 R-AVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLR---NAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGL 159 (280)
T ss_dssp H-HHHHHHHHHHHHCGGGTTTEEEEEECTTCCEECC---CSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTC
T ss_pred H-HHHHHHHHHhhcccCCCCceEEEEcCCCCEEEeC---CcccCCEEEEEEEccCCCCCceEEEEEEEcccccCHhhcCC
Confidence 7 544322111 00 01136788899999883 2 89999999999999 99999963
Q ss_pred ---------------------CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccc
Q 004964 147 ---------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 188 (721)
Q Consensus 147 ---------------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 188 (721)
++.+++|+||+... .. ..+.++|+||+|++|...
T Consensus 160 ~~~~~~~l~~~~g~~~~~~~~~g~~i~ysgDt~~~---~~-----~~~~~~d~li~e~t~~~~ 214 (280)
T 2e7y_A 160 DSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLAL---DP-----EEIRGTELLIHECTFLDA 214 (280)
T ss_dssp CHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSSC---CH-----HHHTTCSCEEEECCBC--
T ss_pred CHHHHHHHHhhcCCceecCCccCCEEEEECCCChH---HH-----HhhcCCCEEEEeCCcCCh
Confidence 34689999999876 11 123578999999998764
No 19
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.66 E-value=5.4e-15 Score=151.02 Aligned_cols=145 Identities=13% Similarity=0.054 Sum_probs=113.6
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCc
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~ 82 (721)
..|+++.+ |.+||+|+.++.+||||||.... .+ ....++|+|||||.|.||+ +++.+.......+
T Consensus 28 ~~~~it~l------g~s~~li~~~~~~iliDpg~~~~----~~----~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~ 92 (235)
T 3kl7_A 28 KELTITFI------KHGSLMLTYDNHSIQVDPVSEYA----DY----TTFPKADIILITHEHGDHL-DPKAIQAVEKSDT 92 (235)
T ss_dssp CEEEEEEE------ETTEEEEEETTEEEEESCCTTTC----CT----TSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTC
T ss_pred CCeEEEEE------cceEEEEEECCEEEEECCCCCcc----ch----hhCCCCCEEEECCCccccC-CHHHHHHhhcCCC
Confidence 45899998 57899999999999999997432 11 1235899999999999999 5666554223478
Q ss_pred cEEechhhHhhhhccchHhhhcCCCeEEecCCC-EEEeccccCCeEEEEecCCCccC----------ceEEEEEECCeEE
Q 004964 83 PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQ-NYHLSGKGEGIVVAPHVAGHLLG----------GTVWKITKDGEDV 151 (721)
Q Consensus 83 ~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q-~~~l~~~~~gl~it~~~aGH~~G----------s~~~~I~~~~~~I 151 (721)
+||++..+....+ ....++.++ .+.+ ++++|+++++-|..+ +++|.|+.++.++
T Consensus 93 ~v~~~~~~~~~l~-----------~~~~l~~g~~~~~~----g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g~~i 157 (235)
T 3kl7_A 93 EIIANENSQKKLG-----------KGKVLKNGDTDTSI----SYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRV 157 (235)
T ss_dssp EEEECHHHHHHHT-----------CSEECCTTCEECCS----TTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEE
T ss_pred EEEEcHHHHHHhc-----------CcEEecCCCEEEEE----CCEEEEEEEeecCCCccccccCCCCceEEEEEeCCeEE
Confidence 9999988876432 256788888 8888 789999999988763 5899999999999
Q ss_pred EEEecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 152 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 152 lytGD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
+|+||+.+.++ +..+.++|++++++.
T Consensus 158 ~~~GDt~~~~~-------~~~l~~~Dv~il~~~ 183 (235)
T 3kl7_A 158 YIAGDTEDIPE-------MKDLKDIDIAFLPVN 183 (235)
T ss_dssp EECCSCCSCGG-------GGGCCSCSEEEEECC
T ss_pred EEECCCCchhh-------HHhhcCCCEEEECCC
Confidence 99999998763 223467899999885
No 20
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.64 E-value=2.2e-16 Score=168.75 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=114.6
Q ss_pred CCcEEEEEECCeE-EEEeCCCCCCCCcccCccc-------cCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEech
Q 004964 17 NPLSYLVSIDGFN-FLIDCGWNDHFDPSLLQPL-------SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (721)
Q Consensus 17 g~s~~ll~~~~~~-ILiDcG~~~~~~~~~l~~l-------~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~ 88 (721)
+++|++|+.++.+ ||||||.... ..+... +.....||+|||||.|.||++|++.|.+ ....+||++.
T Consensus 40 ~~ss~li~~~~~~~iLiD~G~~~~---~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~--~~~~~vy~~~ 114 (321)
T 3jxp_A 40 TQSSIALSDDGVHWILCNASPDIR---AQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE--GCPHQVWCTD 114 (321)
T ss_dssp CBCEEEEESSSSSEEEECCCTTHH---HHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG--GCCEEEEECH
T ss_pred cceEEEEEeCCceEEEEeCCchHH---HHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHh--cCCCeEEECH
Confidence 5789999998876 9999996321 111111 1246789999999999999999999964 3468999999
Q ss_pred hhHhhhhccchHhhh---cC---CCeEEecCCCEEEeccccCCeEEEEecCC--------Cc-----cCceEEEEE--EC
Q 004964 89 PVYRLGLLTMYDQYL---SR---RSVTRLTYSQNYHLSGKGEGIVVAPHVAG--------HL-----LGGTVWKIT--KD 147 (721)
Q Consensus 89 pt~~l~~~~l~d~~~---~~---~~i~~v~y~q~~~l~~~~~gl~it~~~aG--------H~-----~Gs~~~~I~--~~ 147 (721)
.+.+..+..+. .+. .. ..++.++.++++.+.+ .++++|++++.. |. ..+++|+|+ .+
T Consensus 115 ~~~~~l~~~~~-~f~~~~~~~~~i~~~~i~~g~~~~i~~-~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~ 192 (321)
T 3jxp_A 115 MVHQDLTTGFP-LFNMLSHWNGGLQWNRIELEGSFVIDA-CPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRT 192 (321)
T ss_dssp HHHHHTTTTSC-HHHHHTTTTTCEEEEECCSSSCEECTT-STTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTT
T ss_pred HHHHHHHhhCc-cccccccccCceeEEEcCCCCeEEecc-CCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCC
Confidence 99887653222 111 11 1256778888888711 148999999986 65 368999999 78
Q ss_pred CeEEEEEecCCCcCccccCcccccccCCCcEEEeeccccc
Q 004964 148 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 187 (721)
Q Consensus 148 ~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 187 (721)
+++++|+||+....+.++ +.+..+|+||+|+++..
T Consensus 193 g~~i~y~~Dt~~~~~~~~-----~~~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 193 GGKLFYAPGLGQVDEKLL-----AMMHGADCLLVDGTLWE 227 (321)
T ss_dssp CCEEEEESSCCCCCHHHH-----HHHHHCSEEEEECCCSS
T ss_pred CcEEEEECCCCCCCHHHH-----HHhcCCCEEEEeCCCCC
Confidence 899999999986543221 22356899999997654
No 21
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.58 E-value=1.8e-14 Score=149.71 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=113.6
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc------------ccCccccCC----CCCccEEEecCCchh
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP------------SLLQPLSKV----ASTIDAVLLSHPDTL 66 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~------------~~l~~l~~~----~~~Id~IlLTH~H~D 66 (721)
.+|++|.+ |.+|++|+.++.+||+||++...... ..+.+.... +..+|+|||||.|.|
T Consensus 3 ~~m~it~l------Gha~~li~~~g~~iLiDp~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~iliTH~H~D 76 (264)
T 3rpc_A 3 AMTQYTHI------RNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLD 76 (264)
T ss_dssp CCCEEEEE------ETTEEEEEETTEEEEESCCCCCTTCBCCCTTBTTTTSCBSSSCCSSCHHHHHTTCCEEECSCCCGG
T ss_pred ceEEEEEE------eCcEEEEEECCEEEEeCcccCCCcCccCCCCcccccccCCCCCCCCCHHHccccCCEEEECCCchh
Confidence 46899999 58999999999999999987542111 001111111 237999999999999
Q ss_pred hhCchHHHHHhcCCCccEEec-hhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccC-------
Q 004964 67 HLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG------- 138 (721)
Q Consensus 67 HiGgLp~L~~~~g~~~~Iy~T-~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~G------- 138 (721)
|+++++.+.. ...++||++ ..+....+.. ....+..+ ++.+.+ ++++|+++++-|..+
T Consensus 77 H~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~------g~~~~~~~--~~~~~~----~~~~i~~~pa~H~~~~~~~~p~ 142 (264)
T 3rpc_A 77 HWDDTAINSI--PKSLPIFVQNTADKELITSQ------GFIDVRII--FESLEF----NGITLRKTGGSHGTVEMYANPV 142 (264)
T ss_dssp GSCHHHHHHS--CTTSCEEESSHHHHHHHHHT------TCSCEEEC--SSEEEE----TTEEEEEECCCSSCHHHHTSTT
T ss_pred hCCCHHHHhh--ccCCeEEEeCHHHHHHHHhc------CCCeeEEe--cccEEE----CCEEEEEeccccCCcccccccc
Confidence 9999988765 336899999 6665543211 11123443 578888 689999999999875
Q ss_pred -------ceEEEEEEC-CeEEEEEecCCCcCccccCcccccccCCCcEEEeecccc
Q 004964 139 -------GTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA 186 (721)
Q Consensus 139 -------s~~~~I~~~-~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~ 186 (721)
.++|.|+.+ +.+++|+||+.+.++.. .+....++|++++++...
T Consensus 143 ~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~----~~~~~~~~Dv~il~~g~~ 194 (264)
T 3rpc_A 143 LAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVE----KALLRFDPNVIIMNTGYA 194 (264)
T ss_dssp HHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHH----HHHHHHCCSEEEEECSCB
T ss_pred ccccccccEEEEEEeCCccEEEEECCcCchHHHH----HHHHHhCCCEEEEecCcc
Confidence 489999987 78999999999876411 111113589999998643
No 22
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.56 E-value=8.7e-15 Score=150.63 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=92.4
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCC--C--------------------c---ccCccccCCCCCccEEEecCCchhhhCch
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHF--D--------------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGAL 71 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~--~--------------------~---~~l~~l~~~~~~Id~IlLTH~H~DHiGgL 71 (721)
..+||+|+.++..||||||..... . . ..+..++..+.+|++||+||.|.||+||+
T Consensus 38 ~~~~~lI~~~~~~iLiDtG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~~I~~VilTH~H~DH~gg~ 117 (254)
T 3dha_A 38 PVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGN 117 (254)
T ss_dssp EEEEEEEEETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTG
T ss_pred eeEEEEEECCCccEEEECCCChhhhcccccccccccccccccccCchhhHHHHHHHcCCCHHHCCEEEcCCChhhcCCCh
Confidence 568999999999999999975321 0 0 01222334556799999999999999999
Q ss_pred HHHHHhcCCCccEEechhhHhhhhccc---hHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEEC-
Q 004964 72 PYAMKQLGLSAPVFSTEPVYRLGLLTM---YDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD- 147 (721)
Q Consensus 72 p~L~~~~g~~~~Iy~T~pt~~l~~~~l---~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~- 147 (721)
+.+. +++||++..+.+...... .........+..+ .++...+ +++++...+ ||++|++++.+...
T Consensus 118 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~i~~~~~p-GHt~g~~~~~~~~~~ 186 (254)
T 3dha_A 118 GAFT-----NTPIIVQRTEYEAALHREEYMKECILPHLNYKII-EGDYEVV----PGVQLLYTP-GHSPGHQSLFIETEQ 186 (254)
T ss_dssp GGCS-----SSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEE-CSSEEEE----TTEEEEECC-SSSTTCEEEEEEETT
T ss_pred HHCC-----CCEEEECHHHHHHhhccccccccccCcccceEEe-cCCcccc----CCEEEEECC-CCCCCCEEEEEEeCC
Confidence 9764 589999998876542110 0000111123333 3444444 578877654 99999999999886
Q ss_pred CeEEEEEecCCCcC
Q 004964 148 GEDVIYAVDYNRRK 161 (721)
Q Consensus 148 ~~~IlytGD~~~~~ 161 (721)
+++++|+||+-+..
T Consensus 187 ~~~vl~~GD~~~~~ 200 (254)
T 3dha_A 187 SGSVLLTIDASYTK 200 (254)
T ss_dssp TEEEEEEETTCSSH
T ss_pred CCEEEEEecccchh
Confidence 67999999997754
No 23
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.54 E-value=2.5e-14 Score=149.02 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=100.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC---------------------c---ccCccccCCCCCccEEEecCCchhhhCchH
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD---------------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGALP 72 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~---------------------~---~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp 72 (721)
..+||+|+.++..||||||...... . ..+..++..+.+|++||+||.|.||+||++
T Consensus 42 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~ 121 (276)
T 2r2d_A 42 PVSAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVE 121 (276)
T ss_dssp EEEEEEEECSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTTGG
T ss_pred eeEEEEEECCCCCEEEECCCCcccccccccccHhHHhhcCCCCChhhCHHHHHHHcCCCHHHCCEEEecCcccccCCChh
Confidence 4589999998899999999865421 0 012233445668999999999999999999
Q ss_pred HHHHhcCCCccEEechhhHhhhhcc----------chHhhh----cCCCeEEec-CCCEEEeccccCCeEEEEecCCCcc
Q 004964 73 YAMKQLGLSAPVFSTEPVYRLGLLT----------MYDQYL----SRRSVTRLT-YSQNYHLSGKGEGIVVAPHVAGHLL 137 (721)
Q Consensus 73 ~L~~~~g~~~~Iy~T~pt~~l~~~~----------l~d~~~----~~~~i~~v~-y~q~~~l~~~~~gl~it~~~aGH~~ 137 (721)
.+ ..++||++..+....... +...+. ....+..++ .++.+++. +++++.+...||++
T Consensus 122 ~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~---~~~~v~~~~pgHt~ 193 (276)
T 2r2d_A 122 YF-----GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELA---PGVNLLNFGTGHAS 193 (276)
T ss_dssp GC-----SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEE---TTEEEEEEESSSSS
T ss_pred hC-----CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEec---CCEEEEeCCCCCCc
Confidence 87 268999999887643211 111111 123466777 47888885 47999988339999
Q ss_pred CceEEEEEECC-eEEEEEecCCCcC
Q 004964 138 GGTVWKITKDG-EDVIYAVDYNRRK 161 (721)
Q Consensus 138 Gs~~~~I~~~~-~~IlytGD~~~~~ 161 (721)
|++++.+..++ ++++|+||+.+..
T Consensus 194 g~~~~~~~~~~~~~vl~~GD~~~~~ 218 (276)
T 2r2d_A 194 GMLGLAVRLEKQPGFLLVSDACYTA 218 (276)
T ss_dssp SEEEEEEECSSSCEEEEEETTSCCH
T ss_pred eeEEEEEEcCCCceEEEEechhhhH
Confidence 99999998876 8999999998765
No 24
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.53 E-value=1.5e-14 Score=151.87 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+.++..||||||+..... ...+..++..+.+|++||+||.|.||+||++.+.+.. .++||++..+....
T Consensus 54 ~~n~~li~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 131 (294)
T 3m8t_A 54 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKET--GAQLVAGERDKPLL 131 (294)
T ss_dssp SSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHHH--CCEEEEEGGGHHHH
T ss_pred CeEEEEEEECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhcc--CCEEEEChHHHHHH
Confidence 6789999999999999999732110 1122333444557999999999999999999998753 58999999988765
Q ss_pred hccchH------h--hhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCe----EEEEEecCCCc
Q 004964 95 LLTMYD------Q--YLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGE----DVIYAVDYNRR 160 (721)
Q Consensus 95 ~~~l~d------~--~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~----~IlytGD~~~~ 160 (721)
+..... . +........++.++.+.+ ++++++++. .||++|+++|++..+++ +++|+||+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~ 206 (294)
T 3m8t_A 132 EGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTL----GDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVA 206 (294)
T ss_dssp HHTCBTTBTTCGGGCCCCCCCSEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCT
T ss_pred hcccccCccccccCCCCCCCCceEeCCCCEEEe----CCEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCccCC
Confidence 432100 0 001122467888999999 688888876 78999999999986544 89999998743
No 25
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.52 E-value=2.3e-14 Score=148.36 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=99.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+.++..||||||...... ...+..++..+.+|++||+||.|.||+||++.+.+.+ .++||++..+....
T Consensus 24 ~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 101 (263)
T 1k07_A 24 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT--KAKYMVMDEDVSVI 101 (263)
T ss_dssp SBCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHH--CCEEEEEHHHHHHH
T ss_pred CeEEEEEEeCCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHhc--CCEEEEcHHHHHHH
Confidence 6789999999999999999742110 0122333344557999999999999999999998754 58999999888765
Q ss_pred hccchH----------hhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEEC--C--eEEEEEecCCC
Q 004964 95 LLTMYD----------QYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKD--G--EDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d----------~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~--~--~~IlytGD~~~ 159 (721)
...... .+........++.++.+.+ ++++++++. .||++|++++++... + ++++|+||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 102 LSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVEL----GGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGV 177 (263)
T ss_dssp HTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCC
T ss_pred hcccccccccCccccccCCCCCcceEeCCCCEEEE----CCeEEEEEECCCCCCCcEEEEEecccCCceeEEEEECCccc
Confidence 421110 0011123567888888888 688888764 599999999999864 4 48999999865
No 26
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.52 E-value=2.9e-13 Score=147.05 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=111.3
Q ss_pred CeEEEEEeecCCCCCCcEEEEEEC-CeEEEEe--CCCCCCC----------------CcccCc------c--cc-CCCCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSID-GFNFLID--CGWNDHF----------------DPSLLQ------P--LS-KVAST 54 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~-~~~ILiD--cG~~~~~----------------~~~~l~------~--l~-~~~~~ 54 (721)
..|+++.| |.+|++|+.+ +.+|||| ||..... ....+. + +. ....+
T Consensus 36 ~~~~it~l------G~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~ql~~~~G~~~l~~~~~~~p~~l~~~~l~~ 109 (360)
T 2wyl_A 36 GTFAMWWL------GCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQ 109 (360)
T ss_dssp TCEEEEEE------ETTEEEEECTTCCEEEESCCCCCCCCCCCC----------------CCCCCCBCSCCCCCGGGCCC
T ss_pred CcEEEEEe------cccEEEEEeCCCCEEEEeecCCCCcccccccccccchhhhhhcCccccCCCcccCCCccCHHHcCC
Confidence 45899998 4689999995 8999999 7753210 000011 1 11 12467
Q ss_pred ccEEEecCCchhhhC--chHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec
Q 004964 55 IDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV 132 (721)
Q Consensus 55 Id~IlLTH~H~DHiG--gLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~ 132 (721)
||+|||||.|.||+| ++..+.++++..++||++..+.+..+.. -.....+..++.++.+.+ ++++|++++
T Consensus 110 id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~~~----g~~~~~~~~l~~g~~~~~----g~~~v~~~~ 181 (360)
T 2wyl_A 110 IDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGW----GVPKERCIVVKPGDVVKV----KDIEIHALD 181 (360)
T ss_dssp CSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHHH----TCCGGGEEECCTTCEEEE----TTEEEEEEE
T ss_pred CCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHHHc----CCChheEEEcCCCCEEEE----CCEEEEEEe
Confidence 999999999999997 4666665432268999998877654321 001114788999999999 689999999
Q ss_pred CCCc------------cC---------ceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 133 AGHL------------LG---------GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 133 aGH~------------~G---------s~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
+.|. +| +++|+|+.++.+++|+||+....+.. .+....++|++++...
T Consensus 182 ~~H~~~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~----~i~~~~~~Dv~il~~g 250 (360)
T 2wyl_A 182 AFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYA----KHGNEHQIDVALGSYG 250 (360)
T ss_dssp CCCC------------------CCTTTBEEEEEEETTEEEEECTTCCCCTTHH----HHHHHSCCCEEEEEBC
T ss_pred ccCcccccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCHHHH----HHhhCCCCCEEEecCC
Confidence 8653 33 78999999999999999998865311 1111136898888653
No 27
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.51 E-value=1.9e-14 Score=144.58 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=97.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccC-CCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~-~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.+||+|+.++..||||||.........+..+.. ...+|++||+||.|.||+||++.+.+ + .++||++..+.+..+
T Consensus 30 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~~~ 106 (219)
T 3l6n_A 30 SANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNN-K--GIKTYATAKTNEFLK 106 (219)
T ss_dssp EEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHH-T--TCEEEECHHHHHHHH
T ss_pred cceEEEEEeCCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHh-C--CCEEEEcHHHHHHHH
Confidence 5799999999999999999743211112222222 23689999999999999999999986 2 689999998876543
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec--CCCccCceEEEEEECCeEEEEEecCCC
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~--aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
.. ........++.++.+.+ ++++++++. .||++|++++.+ .+.+++|+||+-.
T Consensus 107 ~~-----~~~~~~~~~~~g~~~~~----g~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~~ 161 (219)
T 3l6n_A 107 KD-----GKATSTEIIKTGKPYRI----GGEEFVVDFLGEGHTADNVVVWF--PKYNVLDGGCLVK 161 (219)
T ss_dssp HT-----TCCCCSEECCTTSEEEE----TTEEEEEECCCCSSSSSCCEEEE--TTTTEEEEETTSC
T ss_pred hc-----CCCCCcEecCCCCEEEE----CCEEEEEEeCCCCCCCCCEEEEE--CCCCEEEECCeee
Confidence 21 11223567888999998 688999875 799999999988 4668999999764
No 28
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.49 E-value=8.1e-13 Score=144.45 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=112.5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEEC-CeEEEEe--CCCCCCC------C----------cccCc------c--cc-CCCCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSID-GFNFLID--CGWNDHF------D----------PSLLQ------P--LS-KVAST 54 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~-~~~ILiD--cG~~~~~------~----------~~~l~------~--l~-~~~~~ 54 (721)
..|+++.+ |.+|++|+.+ +.+|||| ||..... . ...+. + +. ....+
T Consensus 60 ~~~~it~l------G~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~q~~~~~G~~~l~p~~~~~p~~l~~~~~~~ 133 (379)
T 3bv6_A 60 NTFSMWWL------GCTGIWLKSAGNTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKE 133 (379)
T ss_dssp TCEEEEEE------ETTEEEEEETTCCEEEESCCCCCCCCCSSCCBCCTTCHHHHHHCCCBCCCCCBCSCCCSCGGGCCC
T ss_pred CceEEEEe------cccEEEEEeCCCCEEEEccCCCCCccccccccccccchhheecCccccCccccCCCCccChHHCCC
Confidence 35789988 4689999996 8999999 7642110 0 00111 1 11 12467
Q ss_pred ccEEEecCCchhhhC--chHHHHHhcCCCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec
Q 004964 55 IDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV 132 (721)
Q Consensus 55 Id~IlLTH~H~DHiG--gLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~ 132 (721)
||+|||||.|.||+| ++..+.++++..++||++..+.+..+.. -.....+..++.++.+.+ ++++|++++
T Consensus 134 iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~~----g~~~~~~~~l~~g~~~~~----g~~~v~~~~ 205 (379)
T 3bv6_A 134 IDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGW----GVPQERCIVAKVGDVLEI----GDVKIRVLD 205 (379)
T ss_dssp CSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHHH----TCCGGGEEECCTTCEEEE----TTEEEEEEE
T ss_pred CCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHHc----CCChhhEEEeCCCCEEEE----CCEEEEEEe
Confidence 999999999999997 5666665432268999998876654321 001114788999999999 689999999
Q ss_pred CCCc-------------c---------CceEEEEEECCeEEEEEecCCCcCccccCcccccccCCCcEEEeecc
Q 004964 133 AGHL-------------L---------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 184 (721)
Q Consensus 133 aGH~-------------~---------Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est 184 (721)
+.|. . ++++|.|+.++.+|+|+||+....+.. .+....++|++++...
T Consensus 206 ~~H~~~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~----~i~~~~~~Dv~il~~g 275 (379)
T 3bv6_A 206 SFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYA----KHGNDYQIDVALLSYG 275 (379)
T ss_dssp CCCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHH----HHHHHSCCSEEEEEBC
T ss_pred cccccccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccHHHH----HHhhcCCCCEEEecCC
Confidence 9774 2 378999999999999999998765311 1111126899988653
No 29
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.49 E-value=2.8e-14 Score=142.49 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=93.0
Q ss_pred CCcEEEEEE--CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSI--DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~--~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+. ++..||||||... ......+.....++++|++||.|.||+||++.+.+.+ .++||++..+....
T Consensus 12 ~~n~~li~~~~~~~~iLiD~G~~~---~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 86 (210)
T 2xf4_A 12 SQNCSLIWCEQTRLAALVDPGGDA---EKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY--GVPVIGPEKEDEFW 86 (210)
T ss_dssp TEEEEEEECTTTCEEEEECCCSCH---HHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHH--TCCEECCCGGGHHH
T ss_pred ccEEEEEEecCCCcEEEEcCCCCH---HHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHc--CCcEEEecchHHHH
Confidence 588999984 5789999999421 1111112211225899999999999999999998764 48999998876654
Q ss_pred hccchHh---hhc-----CCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 95 LLTMYDQ---YLS-----RRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 95 ~~~l~d~---~~~-----~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
...+... +.. ......++.++.+.+ ++.+++++. +||++|++++++ ++.+++|+||+-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~i~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~~~ 155 (210)
T 2xf4_A 87 LQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSV----GNVTLQVLHCPGHTPGHVVFFD--EQSQLLISGDVIFK 155 (210)
T ss_dssp HHTHHHHHHHTTCCCCCCCCCSBCCCTTCEEEE----TTEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSEET
T ss_pred hccchhhhhhcCCcccCCCCCceEECCCCEEEE----CCeEEEEEECCCCCCCcEEEEe--CCCCEEEECCEecc
Confidence 3221111 110 012345677888888 678888764 699999999887 47789999998653
No 30
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.48 E-value=5.5e-14 Score=141.97 Aligned_cols=147 Identities=16% Similarity=0.056 Sum_probs=100.4
Q ss_pred EEEEEeecCCC---------CCCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHH
Q 004964 5 VQVTPLSGVFN---------ENPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73 (721)
Q Consensus 5 m~~t~lgG~~~---------~g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~ 73 (721)
|.+++++..+. ...+||+|+.++..||||||...... ...+..++..+.+|++||+||.|.||+||++.
T Consensus 13 ~~~~~~~~~g~~~~p~~~~~~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~ 92 (221)
T 1ztc_A 13 MELKILVTGGNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVL 92 (221)
T ss_dssp EEEEEEECCBEEEETTTEECCBCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGG
T ss_pred eeEEEEEecceEEecCCCCCCceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhh
Confidence 67777654432 25789999999999999999642110 11233344456689999999999999999988
Q ss_pred HHHhcCCCccEEechhhHhh-hhccchH---h---hh-cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEE
Q 004964 74 AMKQLGLSAPVFSTEPVYRL-GLLTMYD---Q---YL-SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 145 (721)
Q Consensus 74 L~~~~g~~~~Iy~T~pt~~l-~~~~l~d---~---~~-~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~ 145 (721)
+. .++||++.....- .+.+..+ . .. ....+..++.++.+.. +++++...+ ||++|++++.+.
T Consensus 93 ~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~----~~~~v~~~p-GHt~g~~~~~~~ 162 (221)
T 1ztc_A 93 FE-----NATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFD----EKVKVFHTP-WHAREHLSFLLD 162 (221)
T ss_dssp CT-----TCEEEEEGGGGGSCGGGGCHHHHHHHHHHHHTCCSEEEECSCCEETT----TTEEEEECC-SSSTTCEEEEEE
T ss_pred CC-----CCEEEEeHHHhhhhhhhhccchhhhhhhccccccceEEeCCCCEEEC----CeEEEEEcC-CCCcccEEEEEE
Confidence 64 5899999872110 0000000 0 11 1134677777776531 478888776 999999999998
Q ss_pred ECC-eEEEEEecCCCcC
Q 004964 146 KDG-EDVIYAVDYNRRK 161 (721)
Q Consensus 146 ~~~-~~IlytGD~~~~~ 161 (721)
.++ ++++|+||+....
T Consensus 163 ~~~~~~vlftGD~~~~~ 179 (221)
T 1ztc_A 163 TENAGRVLITGDITPNR 179 (221)
T ss_dssp ETTTEEEEECGGGSCSH
T ss_pred cCCCCeEEEEeCccccc
Confidence 876 7999999987543
No 31
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.48 E-value=2.8e-14 Score=149.33 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=95.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC-------------c---ccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD-------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~-------------~---~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
+.+||+|+.++..||||||...... . ..+...+..+.+||+||+||.|.||+||++.+.+...|
T Consensus 47 ~~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~~f 126 (280)
T 3esh_A 47 PTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIF 126 (280)
T ss_dssp ECCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCSS
T ss_pred eEEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCcccccccccCC
Confidence 5589999999999999999864210 0 11233445567899999999999999999988752122
Q ss_pred -CccEEechhhHhhhhccch--------Hhhhc-CCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeE
Q 004964 81 -SAPVFSTEPVYRLGLLTMY--------DQYLS-RRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150 (721)
Q Consensus 81 -~~~Iy~T~pt~~l~~~~l~--------d~~~~-~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~ 150 (721)
+++||++..+......... ..+.. ...+..+. ....+. +++++. ...||++|+++++++.++++
T Consensus 127 p~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~---~gi~~~-~~pGHt~g~~~~~i~~~~~~ 200 (280)
T 3esh_A 127 ENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFE--KHFEPV---PGIKMQ-HSGGHSFGHTIITIESQGDK 200 (280)
T ss_dssp TTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEES--SEECSS---TTEEEE-ECCSSSTTCEEEEEEETTEE
T ss_pred CCCEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeC--CCCeEc---CCEEEE-EcCCCCcccEEEEEEECCcE
Confidence 7999999988765432110 00000 01123332 333443 467774 34799999999999999999
Q ss_pred EEEEecCCCcC
Q 004964 151 VIYAVDYNRRK 161 (721)
Q Consensus 151 IlytGD~~~~~ 161 (721)
++|+||+-+..
T Consensus 201 vlftGD~~~~~ 211 (280)
T 3esh_A 201 AVHMGDIFPTT 211 (280)
T ss_dssp EEECGGGSCSG
T ss_pred EEEEEccCCch
Confidence 99999997754
No 32
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.48 E-value=3.1e-14 Score=148.21 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=99.7
Q ss_pred CCeEEEEEeecCCC------------------CCCcEEEEEECCeEEEEeCCCCCCC--------------C---cccCc
Q 004964 2 GTSVQVTPLSGVFN------------------ENPLSYLVSIDGFNFLIDCGWNDHF--------------D---PSLLQ 46 (721)
Q Consensus 2 ~~~m~~t~lgG~~~------------------~g~s~~ll~~~~~~ILiDcG~~~~~--------------~---~~~l~ 46 (721)
++.|++++|+.+.. .+.+||+|+.++..||||||..... . ...+.
T Consensus 1 m~~~~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 80 (274)
T 3aj3_A 1 MSDTKVYLLDGGSLVLDGYHVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALG 80 (274)
T ss_dssp -CCCEEEEEEEEEEEEEHHHHTTTTCCCSEEEEEEEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHH
T ss_pred CCccEEEEEcCceEEechHheecCCCCCcEEEeeEEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHH
Confidence 14578888865431 1358999999999999999975321 0 01223
Q ss_pred cccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhccch--------Hhh--------h-------
Q 004964 47 PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMY--------DQY--------L------- 103 (721)
Q Consensus 47 ~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~l~--------d~~--------~------- 103 (721)
.++..+.+|++||+||.|.||+||++.+. .++||++..+......... ..+ .
T Consensus 81 ~~g~~~~~i~~VilTH~H~DH~gg~~~~~-----~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
T 3aj3_A 81 LLGLEPRDIDVVVNSHFHFDHCGGNKYFP-----HAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLE 155 (274)
T ss_dssp HTTCCGGGCCEEECSCCSGGGTTTGGGCT-----TSEEEEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCT
T ss_pred HcCCCHHHCCEEEecCcCcccCCchhhCC-----CCEEEECHHHHHHHhCcCCccccccChhhhcccccccccccccccc
Confidence 33445668999999999999999999872 5899999888764432110 000 0
Q ss_pred ----cCCCeEEecCCCEEEeccccCC-eEEEEecCCCccCceEEEEEEC-CeEEEEEecCCCcC
Q 004964 104 ----SRRSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 161 (721)
Q Consensus 104 ----~~~~i~~v~y~q~~~l~~~~~g-l~it~~~aGH~~Gs~~~~I~~~-~~~IlytGD~~~~~ 161 (721)
....+..++ +.+.+ +| +++... .||++|++++.+..+ +++++|+||+.+..
T Consensus 156 ~~~~~~~~~~~~~--~~~~l----~g~~~v~~~-pGHt~g~~~~~~~~~~~~~~lf~GD~~~~~ 212 (274)
T 3aj3_A 156 GTTRANSTFEGID--GDVDL----ARGVKLIST-PGHSIGHYSLLVEFPRRKPILFTIDAAYTQ 212 (274)
T ss_dssp TCCSTTSCEEEEC--SSEEE----ETTEEEEEC-TTSSTTCEEEEECCSSSCCEEEEETTCSSH
T ss_pred ccccCCCCceEcC--Ccccc----CCEEEEEEC-CCCCceeeEEEEECCCCCEEEEEechhhhH
Confidence 011234443 34566 34 777766 499999999999765 67999999987654
No 33
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.47 E-value=6.1e-14 Score=139.96 Aligned_cols=131 Identities=22% Similarity=0.174 Sum_probs=88.3
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
.+.+||+|+.++..+|||||.... .....+.....+|++|++||.|.||+||++.+.+.+ +++||++..+....+
T Consensus 11 ~~~n~~li~~~~~~iliD~G~~~~---~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~ 85 (207)
T 2zwr_A 11 LQENAYLVETGEGPVLIDPGDEPE---KLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEAL--DLPVYLHPLDLPLYE 85 (207)
T ss_dssp TTEEEEEEEETTEEEEECCCSCHH---HHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHH--CCCEEECGGGHHHHH
T ss_pred cccEEEEEEeCCcEEEEeCCCCHH---HHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHh--CCcEEECHHHHHHHh
Confidence 478999999999999999995211 111122211235999999999999999999998754 589999999887654
Q ss_pred ccchHh--hhc-CC----CeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 96 LTMYDQ--YLS-RR----SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 96 ~~l~d~--~~~-~~----~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
...... +.. .. ....++.++.+. ++++... +||++|++++.+. +.+++|+||+...
T Consensus 86 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~i~------~~~~~~~-pGHt~g~~~~~~~--~~~~lf~GD~~~~ 148 (207)
T 2zwr_A 86 GADLAARAWGLAIPKPPLPVRPLEEGMRLF------GFQVLHL-PGHSPGHVAFYDP--EGAQVFSGDLLFR 148 (207)
T ss_dssp THHHHHHHTTCCCCCCCSCCEECCTTCEET------TEEEEEC-CSSSTTCEEEEET--TTTEEEEETSEET
T ss_pred CchhhhhhcCCCCCcCCCCceEeCCCCEEE------EEEEEeC-CCCCCCcEEEEEC--CCCEEEEecccCC
Confidence 221110 100 00 123344444321 4566544 6899999999884 6789999998653
No 34
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.47 E-value=5.1e-13 Score=137.70 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=93.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
..+||+|+.++..||||||..... ..+ .. ..+|++||+||.|.||+||++.+.+.+ .++||++..+......
T Consensus 19 ~~~~~li~~~~~~iLiD~G~~~~~--~~l---~~-~~~i~~vi~TH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~~l~~ 90 (261)
T 3adr_A 19 IATVYVMCGEKLTVMIDAGVSNSI--ADF---SF-LDKLDYIVLTHLHIDHIGLLPELLQVY--KAKVLVKSGFKKYLTS 90 (261)
T ss_dssp GSEEEEEECSSCEEEECCCCTTCC--CCC---TT-CSCCCEEECSCCSGGGTTTHHHHHHHS--CCEEEEETTCTHHHHS
T ss_pred ceEEEEEEcCCcEEEEeCCCCCCh--hhc---CC-CCCCcEEEECCCCccccCCHHHHHHHh--CCeEEECHHHHHHhcC
Confidence 678999976688999999975432 122 33 678999999999999999999998764 6899999877643321
Q ss_pred ------cc----------hHhhhc--C----CCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEE
Q 004964 97 ------TM----------YDQYLS--R----RSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIY 153 (721)
Q Consensus 97 ------~l----------~d~~~~--~----~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~Ily 153 (721)
++ ...+.. . ..+..++.++.+.+ +++++++++ .||++|+++|.+ .+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~i~~~~~pGHt~~~~~~~~----~~~lf 162 (261)
T 3adr_A 91 EDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDL----GGYRMRLIYTPGHARHHMSVLV----DDFLF 162 (261)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEEC----SSSEEEEEECTTSCTTCEEEEE----TTEEE
T ss_pred chhHHHHHHHHHHHHHHHHHHhcccccCCCccceEecCCCCEEEE----CCEEEEEEECCCCCCccEEEEE----CCEEE
Confidence 00 001111 0 12567888888888 688888876 589999999864 47999
Q ss_pred EecCCCc
Q 004964 154 AVDYNRR 160 (721)
Q Consensus 154 tGD~~~~ 160 (721)
+||+...
T Consensus 163 ~GD~~~~ 169 (261)
T 3adr_A 163 TGDSAGA 169 (261)
T ss_dssp EETSSCE
T ss_pred EcCcccc
Confidence 9998653
No 35
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.46 E-value=3.9e-13 Score=147.69 Aligned_cols=131 Identities=19% Similarity=0.127 Sum_probs=96.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+ ++..+|||||..... ...+..+. ....+|++||+||.|.||+||++.+.++++ .++||++..+..+.
T Consensus 34 ~~n~~li~-~~~~iliD~G~~~~~-~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~ 110 (402)
T 1e5d_A 34 TYNAYLVE-DEKTTLFDTVKAEYK-GELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQ-PEKIFTSSLGQKAM 110 (402)
T ss_dssp EEEEEEEC-SSSCEEECCCCGGGH-HHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHC-CSEEEEEHHHHHHH
T ss_pred ceEEEEEE-CCCEEEEeCCCCccH-HHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHHCC-CCEEEEChHHHHHH
Confidence 56799998 678999999974211 11112222 235689999999999999999999988654 68999999988765
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC--CCccCceEEEEEECCeEEEEEecCCC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
+..+. .....+..++.++.+.+ ++++++++++ ||++|++++.+ ++.+++|+||+..
T Consensus 111 ~~~~~---~~~~~~~~~~~g~~~~~----g~~~~~~~~~p~gH~~~~~~~~~--~~~~~l~~GD~~~ 168 (402)
T 1e5d_A 111 ESHFH---YKDWPVQVVKHGETLSL----GKRTVTFYETRMLHWPDSMVSWF--ADEKVLISNDIFG 168 (402)
T ss_dssp HHHHC---CSSCCEEEECTTCEEEC----SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTTC
T ss_pred HHHhC---CCCCceEEcCCCCEEEE----CCCEEEEEeCCCCCCCCcEEEEE--CCCCEEEeccccc
Confidence 42210 01234778889999998 5777777754 79999998766 5778999999843
No 36
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.46 E-value=9.7e-14 Score=140.05 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=95.4
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCC-CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.+||+|+.++..+|||||.........+..+... ..+|++||+||.|.||+||++.+.+ ..++||++..+....+
T Consensus 26 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~vi~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~ 102 (223)
T 1m2x_A 26 AANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGK---IGAKTYSTKMTDSILA 102 (223)
T ss_dssp EEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHH---TTCEEEEEHHHHHHHH
T ss_pred cccEEEEEeCCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEEEeccCCccccCchhhHhh---CCCeEEEcHHHHHHHH
Confidence 57899999999999999997432111112222211 2589999999999999999999886 3689999998876543
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
... .......++.++.+.+ ++.+++++ .+||++|++++++ ++.+++|+||+-.
T Consensus 103 ~~~-----~~~~~~~~~~g~~~~~----g~~~i~~~~~~pgHt~~~~~~~~--~~~~~lf~GD~~~ 157 (223)
T 1m2x_A 103 KEN-----KPRAQYTFDNNKSFKV----GKSEFQVYYPGKGHTADNVVVWF--PKEKVLVGGCIIK 157 (223)
T ss_dssp HTT-----CCCCSEEESSCEEEEE----TTEEEEEECCCSSSSSSCCEEEE--TTTTEEEEETTSC
T ss_pred hcC-----ccCCceecCCCceEEE----CCEEEEEEecCCCCCCCCEEEEE--CCCCEEEEecccc
Confidence 211 0112456778888888 68899987 5899999999987 4678999999654
No 37
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.45 E-value=7.3e-15 Score=150.37 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=92.7
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCC-CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
.+.+||+|+.++..||||||+........+..+... ..+|++||+||.|.||+||++.+.+. .++||++..+..+.
T Consensus 46 ~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~ 122 (243)
T 4hl2_A 46 VASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLA 122 (243)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHHG
T ss_pred ccceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhC---CCeEEECHHHHHHH
Confidence 468999999999999999996421111112222221 34699999999999999999999873 68999999887765
Q ss_pred hccchHhhh---cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 95 LLTMYDQYL---SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 95 ~~~l~d~~~---~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
+........ .......++.++.+.+ +++++....+||++|++++.+ .+.+++|+||+-..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~v~~~~pGHt~g~~~~~~--~~~~~lf~GD~~~~ 185 (243)
T 4hl2_A 123 PQEGMVAAQHSLTFAANGWVEPATAPNF----GPLKVFYPGPGHTSDNITVGI--DGTDIAFGGCLIKD 185 (243)
T ss_dssp GGTTCCCCSEEECBCTTSBBCGGGSTTC----TTEEEECCCSSSSTTCCEEEE--TTTTEEECTTTCCC
T ss_pred hcccccccccccccccceEecCCCeEEE----CCEEEEeCCCCCCcCCEEEEE--cCCCEEEEcceeee
Confidence 421100000 0001112344555555 688985467899999999988 46689999998663
No 38
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=99.44 E-value=1e-13 Score=146.55 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=105.0
Q ss_pred CeEEEEEeecCCCCCCcEEEEEE--CCeEEEEeCCCCCCC--------Cc-ccCccccCCCCCccEEEecCCchhhhCch
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHF--------DP-SLLQPLSKVASTIDAVLLSHPDTLHLGAL 71 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~--~~~~ILiDcG~~~~~--------~~-~~l~~l~~~~~~Id~IlLTH~H~DHiGgL 71 (721)
++|+|..+. ....+.+||+|.. ++..+|||||+.... .. ..+..+.....+|++||+||.|.||+||+
T Consensus 3 g~m~i~~~~-~~~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~gg~ 81 (298)
T 4efz_A 3 GSMTVEGFF-DPATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLSAA 81 (298)
T ss_dssp CSCEEEEEE-CTTTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBCCH
T ss_pred CceEEEEEe-cCCcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhhhH
Confidence 356776663 3344789999987 467999999974210 00 11122222233599999999999999999
Q ss_pred HHHHHhcCCCccEEechhhHhhhhccchHhhhc--------CCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEE
Q 004964 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS--------RRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVW 142 (721)
Q Consensus 72 p~L~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~--------~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~ 142 (721)
+.|.+++ .++||++..+..+.+... ..+.. ......+..++.+.+ ++++++++. .||++|+++|
T Consensus 82 ~~l~~~~--~a~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~----g~~~i~vi~tPGHT~g~~~~ 154 (298)
T 4efz_A 82 PYLKTRV--GGEIAIGRHVTRVQDVFG-KLFNAGPAFAHDGSQFDRLLDDGDTLAL----GALSIRAMHTPGHTPACMTY 154 (298)
T ss_dssp HHHHHHH--CCEEEEETTHHHHHHHHH-HHTTCCTTSCSSSTTSSEEECTTCEEEE----TTEEEEEEECCSSSTTCEEE
T ss_pred HHHHHHh--CCcEEEChhHHHHHHHHH-HhcCCcccccccccCCCEEeCCCCEEEE----CCEEEEEEECCCCCcccEEE
Confidence 9999865 589999988766543211 11110 011367888999999 688888765 5999999999
Q ss_pred EEEECCeE------EEEEecCCCc
Q 004964 143 KITKDGED------VIYAVDYNRR 160 (721)
Q Consensus 143 ~I~~~~~~------IlytGD~~~~ 160 (721)
.+...+++ ++|+||+-..
T Consensus 155 ~~~~~~~~~~~~~~~lftGD~l~~ 178 (298)
T 4efz_A 155 VVTEAHAAHDARDAAAFVGDTLFM 178 (298)
T ss_dssp EEEETTCCGGGCBCEEECCSSBCC
T ss_pred EECCCcccccCCceEEEEcCcccc
Confidence 99876655 9999998654
No 39
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=99.43 E-value=5.7e-13 Score=141.74 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred CeEEEEEeecCCCCCCcEEEEEE--CCeEEEEeCCCCCCCCcccCccc----cC--CCCCccEEEecCCchhhhCchHHH
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHFDPSLLQPL----SK--VASTIDAVLLSHPDTLHLGALPYA 74 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~--~~~~ILiDcG~~~~~~~~~l~~l----~~--~~~~Id~IlLTH~H~DHiGgLp~L 74 (721)
..|+++.+.... +.+||+|.. ++..+|||||.....-...+... +. .+.+|++||+||.|.||+||++.|
T Consensus 27 ~~m~i~~i~~~~--~n~~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l 104 (311)
T 2p18_A 27 SAFSVTVVPTLK--DNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKL 104 (311)
T ss_dssp TTEEEEEEEETT--TEEEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHH
T ss_pred CCcEEEEEecCC--CcEEEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHH
Confidence 346777664321 456999998 57899999985321000111111 10 125899999999999999999999
Q ss_pred HHhcC-----CCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC-CCccCceEEEEEECC
Q 004964 75 MKQLG-----LSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA-GHLLGGTVWKITKDG 148 (721)
Q Consensus 75 ~~~~g-----~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a-GH~~Gs~~~~I~~~~ 148 (721)
.+.+. ..++||++..... ......+..++.+.+ ++.+++++.+ ||++|+++|+++.++
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~l~~g~~l~l----g~~~l~vi~tPGHT~g~i~~~~~~~~ 168 (311)
T 2p18_A 105 KAELEAMNSTVPVVVVGGANDSI------------PAVTKPVREGDRVQV----GDLSVEVIDAPCHTRGHVLYKVQHPQ 168 (311)
T ss_dssp HHHHHSCC--CCCEEEEEGGGTC------------TTCSEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEEECTT
T ss_pred HHhhhhcccCCCCEEEEechhcC------------CCCceEeCCCCEEEE----CCeEEEEEECCCCCcccEEEEEecCC
Confidence 87651 1478999865420 113467888899998 6788888765 999999999998766
Q ss_pred ---e-EEEEEecCCCc
Q 004964 149 ---E-DVIYAVDYNRR 160 (721)
Q Consensus 149 ---~-~IlytGD~~~~ 160 (721)
. +++|+||+-+.
T Consensus 169 ~~~~~~~lftGD~l~~ 184 (311)
T 2p18_A 169 HPNDGVALFTGDTMFI 184 (311)
T ss_dssp CGGGCEEEEEETTEET
T ss_pred cCCcCCEEEEcCcccc
Confidence 6 99999998543
No 40
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=99.43 E-value=1.8e-13 Score=140.59 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=97.6
Q ss_pred eEEEEEeecCCCCCCcEEEEEEC----CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC
Q 004964 4 SVQVTPLSGVFNENPLSYLVSID----GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (721)
Q Consensus 4 ~m~~t~lgG~~~~g~s~~ll~~~----~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g 79 (721)
.|.|..+.. ...+.+||+|..+ +..||||||.... ...+..+......|++||+||.|.||+||++.|.+.+
T Consensus 2 ~m~~~~~~~-~~~~~~~yli~~~~~~~~~~ilID~g~~~~--~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~- 77 (245)
T 2gcu_A 2 KLLFRQLFE-NESSTFTYLLADVSHPDKPALLIDPVDKTV--DRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKL- 77 (245)
T ss_dssp CEEEEEEEE-TTTTEEEEEEEETTSTTCEEEEESCBGGGH--HHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHS-
T ss_pred CcEEEEeec-CCCceEEEEEEcCCCCCCcEEEEeCCCchH--HHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhC-
Confidence 356666532 2337889999984 6899999996310 1111122212235999999999999999999998743
Q ss_pred CCccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECC----eEEEEE
Q 004964 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDG----EDVIYA 154 (721)
Q Consensus 80 ~~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~----~~Ilyt 154 (721)
..++||++..+.. .....+..++.+.+ ++++++++. .||++|+++|++...+ .+++|+
T Consensus 78 ~~~~v~~~~~~~~-------------~~~~~~~~g~~~~~----g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lft 140 (245)
T 2gcu_A 78 PGVKSVISKASGS-------------KADLFLEPGDKVSI----GDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFT 140 (245)
T ss_dssp TTCEEEEEGGGCC-------------CCSEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEE
T ss_pred CCCeEEecccccc-------------cCCEEcCCCCEEEE----CCEEEEEEECCCCCCCCEEEEECCccccccccEEEE
Confidence 2689999876532 12357788899998 688888775 5999999999986542 389999
Q ss_pred ecCCCc
Q 004964 155 VDYNRR 160 (721)
Q Consensus 155 GD~~~~ 160 (721)
||+-..
T Consensus 141 GD~~~~ 146 (245)
T 2gcu_A 141 GDAVLI 146 (245)
T ss_dssp ETTSBT
T ss_pred CCcccc
Confidence 998654
No 41
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=99.42 E-value=9.8e-14 Score=140.41 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=93.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCC-CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
..+||+|+.++..+|||||.........+..+... ..+|++|++||.|.||+||++.+.+. .++||++..+..+.+
T Consensus 40 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~ 116 (227)
T 1mqo_A 40 PSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAELAK 116 (227)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHHHH
T ss_pred cceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhC---CcEEEeccchHHHHH
Confidence 46899999999999999997431101112222221 56899999999999999999999875 589999998876543
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
..- + ...+..+..++.+.+ ++++++++ .+||++|++++.+ ++.+++|+||+-.
T Consensus 117 ~~~---~--~~~~~~~~~~~~~~~----g~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~~ 171 (227)
T 1mqo_A 117 KNG---Y--EEPLGDLQTVTNLKF----GNMKVETFYPGKGHTEDNIVVWL--PQYNILVGGCLVK 171 (227)
T ss_dssp HTT---C--CCCCCCBCSEEEEEE----TTEEEEEECCCCSSSSSCCEEEE--TTTTEEEEETTSC
T ss_pred hcC---C--CCCccccCCCCeeeE----CCEEEEEEecCCCCCCCCEEEEE--CCCCEEEEeeeee
Confidence 210 0 112334555677777 68899876 4799999999987 4678999999864
No 42
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=99.42 E-value=1.3e-13 Score=139.96 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCC-CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.+||+|+.++..||||||+........+..+... ..+|++|++||.|.||+||++.+.+ ..++||++..+..+.+
T Consensus 36 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~ 112 (232)
T 1a7t_A 36 PSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR---KGVQSYANQMTIDLAK 112 (232)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHH
T ss_pred cceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHh---CCCeEEEcHHHHHHHH
Confidence 46899999999999999997421101111222211 4589999999999999999999886 2689999998876543
Q ss_pred ccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
.. ........++.++.+.+ ++.+++++ .+||++|++++++ ...+++|+||+-..
T Consensus 113 ~~-----~~~~~~~~~~~g~~~~~----g~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~~~ 168 (232)
T 1a7t_A 113 EK-----GLPVPEHGFTDSLTVSL----DGMPLQCYYLGGGHATDNIVVWL--PTENILFGGCMLKD 168 (232)
T ss_dssp HH-----TCCCCSEEESSEEEEEE----TTEEEEEECCCCSSSTTCCEEEE--TTTTEEEEETTSCC
T ss_pred hc-----CCCCCceecCCCCEEEE----CCeEEEEEeCCCCCCCCCEEEEE--CCCCEEEEcCcccc
Confidence 21 00112456777788888 68889887 4799999999987 45689999998663
No 43
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.41 E-value=2.9e-13 Score=152.35 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=103.7
Q ss_pred CeEEEEEeecCCCCCCcEEEE--EECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCC
Q 004964 3 TSVQVTPLSGVFNENPLSYLV--SIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll--~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~ 80 (721)
++|+|..+. .+..+.+||+| +.++..||||||... ...+..+.....+|++||+||.|.||+||++.|.+.+
T Consensus 2 ~~m~i~~~~-~~~~~~n~yli~~~~~~~~ilID~g~~~---~~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~-- 75 (474)
T 3tp9_A 2 NAMYLRRFY-DEGLAHASYLVGCQETGEACVIDPARDV---EPYLLTAKREGLRIVAALETHIHADFVSGAREMADRA-- 75 (474)
T ss_dssp CCEEEEEEE-ETTTTEEEEEEEETTTCEEEEESCCSCC---HHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH--
T ss_pred CceEEEEEe-cCCceeEEEEEEECCCCEEEEEcCCCCh---HHHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHH--
Confidence 346666552 22346899999 556789999999642 1122223222347999999999999999999998864
Q ss_pred CccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCe-----EEEEE
Q 004964 81 SAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGE-----DVIYA 154 (721)
Q Consensus 81 ~~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~-----~Ilyt 154 (721)
.++||++..+...... .+........++.++.+.+ ++++++++. .||++|+++|++...+. +++||
T Consensus 76 ~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~----g~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lft 147 (474)
T 3tp9_A 76 GAAICVSDEGPPEWKS----EYVKAYPHRLLKDGDELHF----GNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFS 147 (474)
T ss_dssp CCEEEEECCSCGGGCC----GGGGGSSEEEECTTCEEEE----TTEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEE
T ss_pred CCcEEEcCcchhhhcc----cccccccceECCCCCEEEE----CCEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEe
Confidence 5899998876543221 1112223578889999999 688888765 59999999999987655 89999
Q ss_pred ecCCCc
Q 004964 155 VDYNRR 160 (721)
Q Consensus 155 GD~~~~ 160 (721)
||+-+.
T Consensus 148 GD~lf~ 153 (474)
T 3tp9_A 148 GDFVFV 153 (474)
T ss_dssp ETSEET
T ss_pred CCcccc
Confidence 998653
No 44
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=99.41 E-value=3.3e-13 Score=139.73 Aligned_cols=129 Identities=13% Similarity=0.236 Sum_probs=94.2
Q ss_pred eEEEEEeecCCCCCCcEEEEEE-CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCc
Q 004964 4 SVQVTPLSGVFNENPLSYLVSI-DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82 (721)
Q Consensus 4 ~m~~t~lgG~~~~g~s~~ll~~-~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~ 82 (721)
.|+++.+.... +.+||+|.. ++..+|||||.. ...+..+.....+|++||+||.|.||+||++.+.+.++ .+
T Consensus 7 ~m~i~~i~~~~--~n~~yli~~~~~~~vlID~G~~----~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~-~~ 79 (258)
T 2qed_A 7 SMNLNSIPAFQ--DNYIWVLTNDEGRCVIVDPGEA----APVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFP-QM 79 (258)
T ss_dssp CCEEEEEEETT--TEEEEEEECTTSEEEEECCSCH----HHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCT-TC
T ss_pred ccEEEEecccC--ceEEEEEEECCCcEEEEeCCCc----HHHHHHHHHcCCCCCEEEeCCCCccccCCHHHHHHHCC-CC
Confidence 46777775332 566999987 578999999942 11122222112279999999999999999999988654 58
Q ss_pred cEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCC
Q 004964 83 PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 83 ~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
+||++..+.. . .....++.++.+.+ ++.+++++. .||++|+++|+ +.+++|+||+-.
T Consensus 80 ~v~~~~~~~~----------~--~~~~~~~~g~~~~~----g~~~~~vi~tPGHt~g~~~~~----~~~~lftGD~l~ 137 (258)
T 2qed_A 80 TVYGPAETQD----------K--GATHLVGDGDTIRV----LGEKFTLFATPGHTLGHVCYF----SRPYLFCGDTLF 137 (258)
T ss_dssp EEEECGGGGG----------G--TCSEECCTTCEEEE----TTEEEEEEECCSSSTTCEEEE----ETTEEEEETTEE
T ss_pred EEEecccccC----------C--CCcEEeCCCCEEEE----CCcEEEEEECCCCCCCCeEEE----cCCEEEECCCCC
Confidence 9999876521 0 12467788899998 678888765 49999999887 457999999854
No 45
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=99.40 E-value=4.5e-13 Score=138.88 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=88.7
Q ss_pred CCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|..+ +..+|||||.. ...+..+......|++||+||.|.||+||++.+.+.++ .++||++.....
T Consensus 11 ~n~~yli~~~~~~~~vlID~G~~----~~i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~-- 83 (260)
T 1qh5_A 11 DNYMYLVIDDETKEAAIVDPVQP----QKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLES-GLKVYGGDDRIG-- 83 (260)
T ss_dssp TEEEEEEEETTTTEEEEESCSSH----HHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHST-TCEEEESCTTST--
T ss_pred ceEEEEEEECCCCEEEEEcCCCH----HHHHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCC-CCEEEECcccCC--
Confidence 4569999985 68999999931 11122222222358999999999999999999988653 589999864311
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEE-EE--CCeEEEEEecCCC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKI-TK--DGEDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I-~~--~~~~IlytGD~~~ 159 (721)
.....+..++.+.+ ++++++++. .||++|+++|++ +. ++.+++|+||+-.
T Consensus 84 -----------~~~~~~~~g~~~~~----g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l~ 137 (260)
T 1qh5_A 84 -----------ALTHKITHLSTLQV----GSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLF 137 (260)
T ss_dssp -----------TCSEECCTTCEEEE----TTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEE
T ss_pred -----------CCCEEeCCCCEEEE----CCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCccc
Confidence 12456778888988 678888764 599999999998 43 4678999999854
No 46
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.39 E-value=2.4e-13 Score=145.90 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=93.0
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCC---c---ccCccccCCCCCccEEEecCCchhhhCchHHHHH-hcCCCccEEechhh
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFD---P---SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK-QLGLSAPVFSTEPV 90 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~---~---~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~-~~g~~~~Iy~T~pt 90 (721)
.+||+|+.++..||||||....+. . ..+...+..+.+||+||+||.|.||+||+..+.. .+. +++||++..+
T Consensus 97 ~n~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~~~fp-~a~v~~~~~~ 175 (331)
T 1p9e_A 97 VTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFP-NAVVRADQKE 175 (331)
T ss_dssp EEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESST-TCEEECBHHH
T ss_pred EEEEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCcccccccccCC-CCEEEECHHH
Confidence 459999999999999999763211 1 1233344556789999999999999999984321 122 6899999888
Q ss_pred Hhhhhcc----------c---hH----hhh---cCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeE
Q 004964 91 YRLGLLT----------M---YD----QYL---SRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 150 (721)
Q Consensus 91 ~~l~~~~----------l---~d----~~~---~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~ 150 (721)
.+..... . .+ .+. ....+..++.++. +. .|+++... .||++|+++++++.++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--i~---~gi~vi~t-pGHtpG~~~~~i~~~~~~ 249 (331)
T 1p9e_A 176 ADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTD--LV---PGIKALAS-HGHTPGHTTYVVESQGQK 249 (331)
T ss_dssp HHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEE--CS---TTEEEEEC-TTSSTTCEEEEEEETTEE
T ss_pred HHHHhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCE--Ec---ccEEEEEc-CCCChhCEEEEEEECCcE
Confidence 7643210 0 00 000 0222444554443 32 36777665 599999999999988899
Q ss_pred EEEEecCCCcC
Q 004964 151 VIYAVDYNRRK 161 (721)
Q Consensus 151 IlytGD~~~~~ 161 (721)
++|+||+.+..
T Consensus 250 vlf~GD~~~~~ 260 (331)
T 1p9e_A 250 LALLGDLILVA 260 (331)
T ss_dssp EEECTTSCCCH
T ss_pred EEEEECccCcc
Confidence 99999998754
No 47
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.38 E-value=6.7e-13 Score=139.72 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=97.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+.++..||||||+..... ...+...+..+.+|++||+||.|.||+||++.+.+.+ .++||++..+..+.
T Consensus 57 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~l 134 (303)
T 4ax1_B 57 GISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKAT--GAPVYARAPAIDTL 134 (303)
T ss_dssp SSCCEEECCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHH--CCCEEEEHHHHHHH
T ss_pred CceEEEEEeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhc--CCEEEEcHHHHHHH
Confidence 6789999999999999999743211 0122333344556999999999999999999998764 58999999988765
Q ss_pred hccchH----hh------hcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECC---eEEEEEecCCC
Q 004964 95 LLTMYD----QY------LSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDG---EDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d----~~------~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~---~~IlytGD~~~ 159 (721)
+..... .+ ........++.++.+.+ ++.+++++. .||++|+++|.+.... ...+++||.-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~gD~l~ 209 (303)
T 4ax1_B 135 KRGLPDRTDPNFEVAEPVAPVANIVTLADDGVVSV----GPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLT 209 (303)
T ss_dssp HHTSCCTTSTTGGGCCCCCCCSCEEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCC
T ss_pred hccccCccccccccccCcCCCCCcEEeCCCCEEEE----CCeEEEEEeCCCCCccceEEEEEecCCCceeEEEEeCCcc
Confidence 432100 00 01123678889999999 688888775 7899999999987531 12344588644
No 48
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=99.38 E-value=8.6e-13 Score=136.29 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
..+||+|..+ +..+|||||.. ...+..+.....+|++||+||.|.||+||++.+.+.+ .++||++..+....
T Consensus 11 ~n~~yli~~~~~~~~~lID~g~~----~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 84 (254)
T 1xm8_A 11 DNYAYILHDEDTGTVGVVDPSEA----EPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRY--GAKVIGSAMDKDRI 84 (254)
T ss_dssp TEEEEEEECTTTCCEEEECCSSH----HHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHH--CCEEEEEGGGGGGS
T ss_pred CeEEEEEEECCCCEEEEEeCCCH----HHHHHHHHHcCCCccEEEECCCCCcccccHHHHHHHc--CCeEEEchhhhhcC
Confidence 3459999875 56899999931 1112222222347999999999999999999998865 48999998765432
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEEEEecCCC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
. .....++.++.+.+ ++.+++++. .||++|++++++. +.+++|+||+-.
T Consensus 85 ~----------~~~~~~~~g~~~~l----g~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~l~ 134 (254)
T 1xm8_A 85 P----------GIDMALKDGDKWMF----AGHEVHVMDTPGHTKGHISLYFP--GSRAIFTGDTMF 134 (254)
T ss_dssp T----------TEEEEECTTCEEEE----TTEEEEEEECCSSSSSCEEEEEG--GGTEEEEETTEE
T ss_pred C----------CCceeeCCCCEEEE----CCEEEEEEECCCCCCCcEEEEEC--CCCEEEEcCccc
Confidence 2 12356788899988 688888775 6999999999884 467999999855
No 49
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=140.25 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=95.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC-cc-cCccccCCCCCccEEEecCCchhhhCchHHHHHhcC--CCccEEechhhHh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD-PS-LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG--LSAPVFSTEPVYR 92 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~-~~-~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g--~~~~Iy~T~pt~~ 92 (721)
+.|||+|+.++..||||||...... .. ....+.....+|++||+||.|.||+||++.+.+.++ ..+++|+...+..
T Consensus 31 ~~n~~li~~~~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~ 110 (289)
T 4ad9_A 31 GTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQ 110 (289)
T ss_dssp CCEEEEECSSSSEEEECCCSTTCHHHHHHHHHHHHHTTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSC
T ss_pred ceEEEEEecCCceEEEeCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcc
Confidence 7899999988889999999632110 00 111222223479999999999999999999998752 3678998765432
Q ss_pred hhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC-CCccCceEEEEEECCeEEEEEecCCC
Q 004964 93 LGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA-GHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 93 l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a-GH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
..... . .....+..++.++.+.+ ++.+++++.+ ||++|++++.+ +..+++|+||.-.
T Consensus 111 ~~~~~-~---~~~~~~~~~~~g~~~~~----gg~~~~~~~~pGHt~~~~~~~~--~~~~~lftGD~~~ 168 (289)
T 4ad9_A 111 REEII-G---NGEQQYVYLKDGDVIKT----EGATLRVLYTPGHTDDHMALLL--EEENAIFSGDCIL 168 (289)
T ss_dssp CCCCB-T---TTTBCEEECCTTCEEEE----TTEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSSC
T ss_pred hhhhc-c---CCCCceEEcCCCCEEEe----CCeEEEEEECCCCCCCCEEEEE--cCCCEEEEecccC
Confidence 21110 0 01224778899999999 6888888765 99999999988 4567999999744
No 50
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.38 E-value=2.5e-12 Score=129.91 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=84.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
+++|++|+.++.+||||||... . .+.....++|+|||||.|.||++ ++.+. + +.+++.
T Consensus 19 ~~~~~li~~~~~~iLiD~g~~~---~----~~~~~~~~id~VliTH~H~DH~~-~~~l~---~-~~~vi~---------- 76 (220)
T 1vjn_A 19 GHACFALEMEGKTIVTDPFDES---V----GYPIPNVTADVVTESHQHFDHNA-HHLVK---G-NFRVID---------- 76 (220)
T ss_dssp ETTEEEEEETTEEEEESCCC------------CCCCCBCSEEECSSCC---CG-GGGCB---S-SCEEEC----------
T ss_pred cCCEEEEEECCEEEEEcCCCCc---C----CCCcCCCCcCEEEECCCCCCCCC-chHhc---C-CCEEEc----------
Confidence 6899999999999999999642 1 12223568999999999999998 77543 1 233331
Q ss_pred cchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccC-------ceEEEEEECCeEEEEEecCCCcCccccCccc
Q 004964 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG-------GTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 169 (721)
Q Consensus 97 ~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~G-------s~~~~I~~~~~~IlytGD~~~~~~~~l~~~~ 169 (721)
....+.+ ++++|+++++.|..+ +++|.|+.++.+++|+||+.+.++. ..
T Consensus 77 ----------------~~g~~~~----~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~~----~~ 132 (220)
T 1vjn_A 77 ----------------RPGAYTV----NGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTP----AQ 132 (220)
T ss_dssp ----------------SSEEEEE----TTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTCCSCCCH----HH
T ss_pred ----------------CCCeEEE----CCEEEEEEeeecCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcchH----HH
Confidence 1125566 689999999999863 4899999999999999999986631 11
Q ss_pred ccccCCCcEEEeecc
Q 004964 170 LESFVRPAVLITDAY 184 (721)
Q Consensus 170 l~~l~~~d~LI~est 184 (721)
+..+.++|++++++.
T Consensus 133 ~~~~~~~Dvlil~~g 147 (220)
T 1vjn_A 133 VEEIGEIDVLLVPVG 147 (220)
T ss_dssp HHHHCCCSEEEEECC
T ss_pred HHhhCCCCEEEEcCC
Confidence 223457999999884
No 51
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=99.38 E-value=5.6e-12 Score=144.48 Aligned_cols=219 Identities=10% Similarity=0.096 Sum_probs=131.8
Q ss_pred CeEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc---------------------c-cCcccc-CCCCCccEEE
Q 004964 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP---------------------S-LLQPLS-KVASTIDAVL 59 (721)
Q Consensus 3 ~~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~---------------------~-~l~~l~-~~~~~Id~Il 59 (721)
+.++|++|. .+...++|+||+.++..||||||....+.. . .+..+. ..+.+||+||
T Consensus 4 ~~~~I~~ld-vG~gqg~~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~id~vi 82 (547)
T 2bib_A 4 SGNKIHFIN-VQEGGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFIL 82 (547)
T ss_dssp SCEEEEEEC-BSSSBCCEEEEEETTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEE
T ss_pred cCceEEEEE-cCCCCceEEEEEeCCeEEEEeCCCCCcccccccccccccccccccccchhHHHHHHHHHhcCcccccEEE
Confidence 457788773 222246899999999999999997532110 0 001111 2346799999
Q ss_pred ecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhcc------------chHhhhcCC-CeE--EecCCCEEEeccccC
Q 004964 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLT------------MYDQYLSRR-SVT--RLTYSQNYHLSGKGE 124 (721)
Q Consensus 60 LTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~~------------l~d~~~~~~-~i~--~v~y~q~~~l~~~~~ 124 (721)
|||+|.||+||++.|.+.++ ..+||++..+....... +.+...... .+. .+..++.+.+ +
T Consensus 83 lTH~H~DHiggl~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~----g 157 (547)
T 2bib_A 83 VTHTHSDHIGNVDELLSTYP-VDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQF----G 157 (547)
T ss_dssp CCCSCHHHHTTHHHHHHHSC-BSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTCEEECSCCTTTTEEEE----T
T ss_pred EcCCCccccCCHHHHHHhCC-ccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCCeEEEeecCCCceEec----C
Confidence 99999999999999988654 23699887665432110 001111111 111 2456778888 6
Q ss_pred CeEEEEecC---CC-----------ccCceEEEEEECCeEEEEEecCCCcCccccCccccc-ccCCCcEEEeeccccccc
Q 004964 125 GIVVAPHVA---GH-----------LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE-SFVRPAVLITDAYNALHN 189 (721)
Q Consensus 125 gl~it~~~a---GH-----------~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~-~l~~~d~LI~est~~~~~ 189 (721)
+++|++++. .| ..+|++++|+.++.+++|+||+....+.. ..+. .+.++|+|+.....+...
T Consensus 158 ~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~~~~~~e---~~l~~~~~~~DvLkv~HHG~S~~ 234 (547)
T 2bib_A 158 DMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAE---DKYGPLIGKVDLMKFNHHHDTNK 234 (547)
T ss_dssp TEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCCSTTSHH---HHHHHHHCCCSEEECTTTTBCSS
T ss_pred CeeEEEecCccccCccccccccCCCCCCcEEEEEEECCEEEEecCCccchhhhh---hhhcccccceeEEEeccccCccc
Confidence 899998863 23 35789999999999999999998753211 0111 135789998743321111
Q ss_pred CCCcchHHHHHHHHHHHHhcCCeEEEeccCc---h-HHHHHHHHHHHHHHhcCCCccEEE
Q 004964 190 QPPRQQREMFQDAISKTLRAGGNVLLPVDSA---G-RVLELLLILEDYWAEHSLNYPIYF 245 (721)
Q Consensus 190 ~~~r~~~e~l~~~I~~~l~~gG~VLIP~~~~---G-R~qEll~~L~~~~~~~~l~~pI~~ 245 (721)
....+|++.+. ...++|.+-.- | -.+|++..|.+. .+++|-
T Consensus 235 ----s~s~~fl~~v~-----P~~aiiS~g~~n~~~hP~~evl~~l~~~------g~~v~~ 279 (547)
T 2bib_A 235 ----SNTKDFIKNLS-----PSLIVQTSDSLPWKNGVDSEYVNWLKER------GIERIN 279 (547)
T ss_dssp ----SSCHHHHHHHC-----CSEEEESBSSCSBSSSBCHHHHHHHHTT------TCEEEE
T ss_pred ----CChHHHHHhcC-----CcEEEEcCCcccccCCCCHHHHHHHHhC------CceEEE
Confidence 11126666553 22344433221 0 157888777765 566664
No 52
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=99.37 E-value=9.2e-13 Score=139.98 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCc----ccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDP----SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~----~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~ 92 (721)
..+||+|+.++..+|||||....... ..+...+..+.+|++||+||.|.||+||++.+.+. .++||++..+..
T Consensus 21 ~~n~~li~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~Vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~ 97 (317)
T 2zo4_A 21 TVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGL---GARVFLHEEEFA 97 (317)
T ss_dssp EEEEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHHT---TCEEEEEGGGTT
T ss_pred cEEEEEEEcCCceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCEEEEcCCCCcccccHHHHHhC---CCEEEEcHHHHH
Confidence 57899999988999999997532101 12223334456799999999999999999999874 589999988876
Q ss_pred hhhccc----------hHhhh------------------------cCCCeEEecCCCEEEeccccCCeEEEEec-CCCcc
Q 004964 93 LGLLTM----------YDQYL------------------------SRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLL 137 (721)
Q Consensus 93 l~~~~l----------~d~~~------------------------~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~ 137 (721)
..+... ...+. .......++.++.+.+ +|.+++++. .||++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~----gg~~~~~i~tpGHt~ 173 (317)
T 2zo4_A 98 RGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEV----AGKRLRVLWTPGHAD 173 (317)
T ss_dssp THHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEE----TTEEEEEEECCSSST
T ss_pred HHHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccCCCCCCceEECCCCEEEe----CCceEEEEECCCCCc
Confidence 543211 00110 0113567888888888 688888776 49999
Q ss_pred CceEEEEEECCeEEEEEecCCCc
Q 004964 138 GGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 138 Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
|++++.+ ++.+++|+||.-..
T Consensus 174 g~~~~~~--~~~~~lf~GD~~~~ 194 (317)
T 2zo4_A 174 GHAAFYL--EEEGVLLAGDALLE 194 (317)
T ss_dssp TCEEEEE--TTTTEEEEETSCCS
T ss_pred ccEEEEe--CCCCEEEECCEecC
Confidence 9999876 67789999998654
No 53
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.36 E-value=1.1e-12 Score=136.18 Aligned_cols=137 Identities=21% Similarity=0.226 Sum_probs=94.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+.+||+|+.++..||||||...... ...+..++..+.+|++||+||.|.||+||++.+.+.+ .++||++..+....
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~l 114 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRT--GAKVAANAESAVLL 114 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHS--SCEEEECHHHHHHH
T ss_pred CcEEEEEEeCCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHhc--CCeEEECHHHHHHH
Confidence 5679999999999999999642110 0122333344557999999999999999999998754 58999999887654
Q ss_pred hccch-H-hh------hcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEE--CCe-EEEEEecCCC
Q 004964 95 LLTMY-D-QY------LSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITK--DGE-DVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~-d-~~------~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~--~~~-~IlytGD~~~ 159 (721)
+.... + .+ ........++.++.+.+ ++++++++. .||++|++++++.. .+. ..+++||.-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----g~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~~gD~l~ 187 (269)
T 1sml_A 115 ARGGSDDLHFGDGITYPPANADRIVMDGEVITV----GGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLS 187 (269)
T ss_dssp HTTTCSBTTTBTSSCCCCCCCSEECCTTCEEEE----TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCC
T ss_pred hcCCccccccccccCCCCCCCCeEeCCCCEEEE----CCEEEEEEECCCCCcccEEEEEecccCCceeEEEEecccc
Confidence 32110 0 00 00112456778888888 688888765 58999999999865 232 3455589754
No 54
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.35 E-value=5.5e-12 Score=138.32 Aligned_cols=130 Identities=16% Similarity=0.115 Sum_probs=94.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
..+||+|+. +..+|||||...... ...+... ..+.+||+||+||.|.||+||++.+.++++ .++||++..+....
T Consensus 35 ~~n~~li~~-~~~iliD~g~~~~~~~~~~~l~~~-~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l 111 (398)
T 1ycg_A 35 TYNAYLIVD-DKTALVDTVYEPFKEELIAKLKQI-KDPVKLDYLVVNHTESDHAGAFPAIMELCP-DAHVLCTQRAFDSL 111 (398)
T ss_dssp EECCEEECS-SSCEEECCCCGGGHHHHHHHHHHH-CSSCCCSEEEESCCSHHHHTTHHHHHHHCT-TCEEEECHHHHHHH
T ss_pred eEEEEEEEC-CCEEEEeCCCcccHHHHHHHHHHh-cCcccCCEEEeCCCCcchhhhHHHHHHHCC-CCEEEEcHHHHHHH
Confidence 467899984 569999999742110 0112222 236789999999999999999999988653 68999999887754
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec--CCCccCceEEEEEECCeEEEEEecCC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~--aGH~~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
+..+. .....+..++.++.+.+ ++.++++++ .||++|++++.+ ++.+++|+||+.
T Consensus 112 ~~~~~---~~~~~~~~~~~g~~~~~----g~~~~~~~~~p~gH~~~~~~~~~--~~~~~lf~GD~~ 168 (398)
T 1ycg_A 112 KAHYS---HIDFNYTIVKTGTSVSL----GKRSLTFIEAPMLHWPDSMFTYV--PEEALLLPNDAF 168 (398)
T ss_dssp HHHTC---SCCCEEEECCTTCEEEC----SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTT
T ss_pred HHHhC---CCCcceEEeCCCCEEee----CCcEEEEEeCCCCCCCCcEEEEE--CCCcEEEecccc
Confidence 42210 01123677888999998 577777764 379999988765 567899999984
No 55
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=99.35 E-value=8.2e-13 Score=133.68 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=89.3
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc-CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
.+.+||+|+.++..||||||............+. ....+|++|++||.|.||+||++.+.+ ..++||++..+..+.
T Consensus 24 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~ 100 (233)
T 3q6v_A 24 VQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKT---LGAKIVATQMTYDLQ 100 (233)
T ss_dssp SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHH
T ss_pred CCCcEEEEEeCCeEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhhChHHHHhh---CCCEEEEcHHHHHHH
Confidence 4778999998889999999974321111111121 135689999999999999999999874 368999999988765
Q ss_pred hccchHh---hh----cC------CCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 95 LLTMYDQ---YL----SR------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 95 ~~~l~d~---~~----~~------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
+...... .. .. .....+..+ ..+. .+++++...+.||++|++++.+ +..+++| ||.-..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~--~~~~~v~~~~pGHt~g~~~~~~--~~~~~lf-gD~~~~ 172 (233)
T 3q6v_A 101 KSQWGSIVNFTRQGNNKYPNLEKSLPDTVFPGD--FNLQ--NGSIRAMYLGEAHTKDGIFVYF--PAERVLY-GNCILK 172 (233)
T ss_dssp HHHHHHHHHHHHHHSTTCCCCCCCCCSEEESSC--EEET--TTTEEEECCCCSSSSSCCEEEE--TTTTEEE-CTTTSC
T ss_pred HhhhHHHHHHHhccccccccccccCCCEEeCCC--eEEc--CceEEEEECCCCCCcCcEEEEe--ccCCEEE-Cceecc
Confidence 4321110 00 00 012233333 3332 1467776666899999998887 4667999 997543
No 56
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.34 E-value=4.5e-13 Score=138.85 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=92.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
..|||+|+. +..+|||||.... ....+..+. ....+|++|++||.|.||+||++.+.++++ .++||++..+....
T Consensus 42 ~~N~yli~~-~~~iLID~G~~~~-~~~~~~~l~~~~~~~~i~~IilTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l 118 (262)
T 3hnn_A 42 TSNSYVIEG-DKTAIIDPPVESF-MKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAP-QITFVCSLPAAGDL 118 (262)
T ss_dssp EEEEEEEES-SSEEEECCCCHHH-HHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCT-TCEEEECHHHHHHH
T ss_pred EEEEEEEEC-CCEEEEECCCcch-HHHHHHHHHHhCChhhCCEEEECCCCcchhchHHHHHHHCC-CCEEEECHHHHHHH
Confidence 457899986 7899999996411 011111111 234689999999999999999999988653 68999999988765
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CC-CccCceEEEEEECCeEEEEEecC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AG-HLLGGTVWKITKDGEDVIYAVDY 157 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aG-H~~Gs~~~~I~~~~~~IlytGD~ 157 (721)
+..+.. .......++.++.+.+. ++.+++++. .| |++|+.++.+ .+.+++||||+
T Consensus 119 ~~~~~~---~~~~~~~~~~g~~l~lg---~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lfsGD~ 175 (262)
T 3hnn_A 119 RAAFPD---DNLNILPMRGKETLDLG---KGHVLKFLPIPSPRWPAGLCTYD--VQTQILYTDKI 175 (262)
T ss_dssp HHHSSS---SCCEEEECCSSCEEECS---TTCEEEEEECCCSSCTTCEEEEE--TTTTEEEEETT
T ss_pred HHHhCC---CCCceEEeCCCCEEEcC---CCcEEEEEECCCCCCCCeeEEEe--CCCCEEEEeec
Confidence 432110 12346788889999982 266666654 45 9999987765 56789999998
No 57
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.34 E-value=1.7e-12 Score=142.73 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=96.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccC-----CCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhH
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVY 91 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~-----~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~ 91 (721)
..+||+|+.++..+|||||..... ...+..+.. .+.+|++||+||.|.||+||++.+.++++ .++||++..+.
T Consensus 34 ~~n~~li~~~~~~iLiD~g~~~~~-~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~p-~~~v~~~~~~~ 111 (404)
T 2ohh_A 34 TYNAYLVCGDEGVALIDNSYPGTF-DELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFP-EAPIYCTEVAV 111 (404)
T ss_dssp EECCEEEECSSCEEEECCCCTTCH-HHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHST-TCCEEECHHHH
T ss_pred eEEEEEEEeCCcEEEEeCCCCccH-HHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHHCC-CCEEEECHHHH
Confidence 347899998888999999974211 111122211 35689999999999999999999987653 68999999887
Q ss_pred hhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC--CCccCceEEEEEECCeEEEEEecCC
Q 004964 92 RLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 92 ~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
...+..+. ......+..++.++.+.+ ++.+++++++ ||++|++++++. ..+++|+||+-
T Consensus 112 ~~~~~~~~--~~~~~~~~~~~~g~~~~~----g~~~i~~~~~p~gH~~~~~~~~~~--~~~~lf~GD~~ 172 (404)
T 2ohh_A 112 KGLLKHYP--SLREAEFMTVKTGDVLDL----GGKTLTFLETPLLHWPDSMFTLLD--EDGILFSNDAF 172 (404)
T ss_dssp HHHHHHCG--GGGGSCEEECCTTCEEEC----SSCEEEEEECTTSSSTTCEEEEEE--TTTEEECTTTT
T ss_pred HHHHHHhc--ccccCCceEcCCCCEEEE----CCEEEEEEeCCCCCCCCceEEEEC--CCcEEEecCcc
Confidence 75542211 011234678888999998 6777877765 799999998874 56799999975
No 58
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=99.33 E-value=1.1e-12 Score=136.16 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=90.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCC-CCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.+||+|+.++..||||||+........+..+... ..+|++|++||.|.||+||++.+.+. +++||++..+....+
T Consensus 67 ~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~~i~~VilTH~H~DH~gg~~~~~~~---~a~v~~~~~~~~~~~ 143 (265)
T 2y8b_A 67 SSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAA---GVATYTSPLTRQLAE 143 (265)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT---TCEEEECHHHHHHHH
T ss_pred cceEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCChhhcCCHHHHhhC---CCeEEECHHHHHHHH
Confidence 57899999999999999997421111111222211 23799999999999999999988762 689999998877543
Q ss_pred ccchHhhhcCCCeEEe----cCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCc
Q 004964 96 LTMYDQYLSRRSVTRL----TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v----~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
... ..... .++ +.++.+.+ +++++.....||++|++++.+ ++.+++|+||+-+.
T Consensus 144 ~~~----~~~~~-~~~~~~~~~~~~~~~----g~~~v~~~~pGHt~g~~~~~~--~~~~~lf~GD~~~~ 201 (265)
T 2y8b_A 144 AAG----NEVPA-HSLKALSSSGDVVRF----GPVEVFYPGAAHSGDNLVVYV--PAVRVLFGGCAVHE 201 (265)
T ss_dssp HTT----CCCCS-EECSSCSSTTEEEEE----TTEEEEECCSSSSTTCCEEEE--TTTTEEEEETTSCC
T ss_pred hcc----ccccc-ccccccCCCCcEEee----cCEEEEecCCCCCCCCEEEEe--cCCCEEEEcccccc
Confidence 211 00001 122 44556665 578887667899999999987 45689999998764
No 59
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.33 E-value=1.9e-12 Score=136.86 Aligned_cols=137 Identities=15% Similarity=0.069 Sum_probs=94.9
Q ss_pred CCcEEEE-EECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhh
Q 004964 17 NPLSYLV-SIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (721)
Q Consensus 17 g~s~~ll-~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l 93 (721)
+.+||+| ..++..+|||||...... ...+..+-....+|++|++||.|.||+||++.+.+.++ .++||++..+...
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~-~a~v~~~~~~~~~ 101 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLP-NVQVLASERTCQA 101 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCT-TCEEEEEHHHHHH
T ss_pred CceEEEEEeCCCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHhCC-CCeEEECHHHHHH
Confidence 6789999 478899999999742110 01122221035689999999999999999999987543 6899999988765
Q ss_pred hhccch-----H-------hhh--------cCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEECCeEEE
Q 004964 94 GLLTMY-----D-------QYL--------SRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVI 152 (721)
Q Consensus 94 ~~~~l~-----d-------~~~--------~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~~~~Il 152 (721)
...... . .+. ....+..++.++.+.+. +|.+++++. .||++|++++.+ .+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg---~g~~l~~i~~pGHt~g~~~~~~--~~~~~l 176 (303)
T 2vw8_A 102 WKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELG---PRHRLQVIEAHGHSDDHVVFYD--VRRRRL 176 (303)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEE---TTEEEEEEECTTSSTTCEEEEE--TTTTEE
T ss_pred HhccchhhHHHHHHHHHHHhhcccccccCCCCCCceEcCCCCEEecC---CCeEEEEEECCCCCcccEEEEE--CCCCEE
Confidence 432100 0 000 01124667888888884 347777654 499999999888 467899
Q ss_pred EEecCCC
Q 004964 153 YAVDYNR 159 (721)
Q Consensus 153 ytGD~~~ 159 (721)
|+||.-.
T Consensus 177 f~GD~~~ 183 (303)
T 2vw8_A 177 FCGDALG 183 (303)
T ss_dssp EEETTTC
T ss_pred EEcCccC
Confidence 9999853
No 60
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=99.33 E-value=1.8e-12 Score=130.66 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=86.2
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccC-CCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 16 ~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~-~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
.+.+||+|+.++..||||||.........+..+.. .+.+|++|++||.|.||+||++.+.+ .+++||++..+..+.
T Consensus 21 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~ 97 (227)
T 3iog_A 21 VQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS---IGAKVVSTRQTRDLM 97 (227)
T ss_dssp SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHH
T ss_pred ccCcEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhh---CCCeEEECHHHHHHH
Confidence 36789999988899999999643211111122222 35689999999999999999999875 368999999988765
Q ss_pred hccchHhh-------hcCC---C--eEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCC
Q 004964 95 LLTMYDQY-------LSRR---S--VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 158 (721)
Q Consensus 95 ~~~l~d~~-------~~~~---~--i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~ 158 (721)
+....... .... . ...+. ...+.+. .+.+++.....||++|++++.+. +.+++| ||.-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~--~~~~~~~~~~pGHt~g~~~~~~~--~~~~lf-gd~l 167 (227)
T 3iog_A 98 KSDWAEIVAFTRKGLPEYPDLPLVLPNVVH-DGDFTLQ--EGKVRAFYAGPAHTPDGIFVYFP--DEQVLY-GGCI 167 (227)
T ss_dssp HHHHHHHHHHHHHHCTTSCCCCCCCCSEEE-SSCEEET--TTTEEEECCCCSSSSSCCEEEET--TTTEEE-CGGG
T ss_pred HHhhHHHHHHhhcCCCCCCCccccCCCEee-cCeEEEc--CcEEEEEecCCCCCCCcEEEEec--CCCEEE-cccc
Confidence 43221110 0000 0 01111 2235663 12355544457999999998874 567899 7743
No 61
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=99.32 E-value=1.8e-12 Score=132.55 Aligned_cols=133 Identities=13% Similarity=0.116 Sum_probs=90.0
Q ss_pred CCcEEEEEEC-CeEEEEeCCCCCCCCcccCccccC--CCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhh
Q 004964 17 NPLSYLVSID-GFNFLIDCGWNDHFDPSLLQPLSK--VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (721)
Q Consensus 17 g~s~~ll~~~-~~~ILiDcG~~~~~~~~~l~~l~~--~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l 93 (721)
+.+||+|+.+ +..+|||||.........+..+.. ....+ +|++||.|.||+||++.+.+ + .++||++..+...
T Consensus 29 ~~n~~li~~~~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~~-~vi~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~ 104 (246)
T 2fhx_A 29 SSNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKV-VAINTHFHLDGTGGNEIYKK-M--GAETWSSDLTKQL 104 (246)
T ss_dssp TEEEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEE-EEECCSSSHHHHTTHHHHHH-T--TCEEEEEHHHHHH
T ss_pred CCCEEEEEeCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCcE-EEEeCCCCccccChHHHHhh-c--CCEEEEcHHHHHH
Confidence 6789999876 478999999742111111111211 23344 79999999999999999875 2 6899999988876
Q ss_pred hhccchH-------h---------hhc-C----CCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeE
Q 004964 94 GLLTMYD-------Q---------YLS-R----RSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGED 150 (721)
Q Consensus 94 ~~~~l~d-------~---------~~~-~----~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~ 150 (721)
.+..... . +.. . ..+..++.++.+.+ ++.+++++ .+||++|++++.+ ++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~----g~~~i~~~~~~pGHt~g~~~~~~--~~~~ 178 (246)
T 2fhx_A 105 RLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSF----SNELVEVSFPGPAHSPDNVVVYF--PKKK 178 (246)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEE----TTEEEEEECCCCSSSTTCCEEEE--TTTT
T ss_pred HHhcchhhhHHHHhhhccccchhhhcccccCCCCceeecCCCCEEEE----CCEEEEEEeCCCCCCCCCEEEEE--cCCC
Confidence 4321100 0 000 1 11334667778888 67888886 3799999998887 4678
Q ss_pred EEEEecCCC
Q 004964 151 VIYAVDYNR 159 (721)
Q Consensus 151 IlytGD~~~ 159 (721)
++|+||+-.
T Consensus 179 ~lf~GD~~~ 187 (246)
T 2fhx_A 179 LLFGGCMIK 187 (246)
T ss_dssp EEEEETTCC
T ss_pred EEEECCEec
Confidence 999999865
No 62
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.30 E-value=2.3e-12 Score=144.65 Aligned_cols=142 Identities=12% Similarity=0.056 Sum_probs=101.2
Q ss_pred eEEEEEeecCCCCCCcEEEEEE--CCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCC
Q 004964 4 SVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (721)
Q Consensus 4 ~m~~t~lgG~~~~g~s~~ll~~--~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~ 81 (721)
+|+|..+. .+..+.+||+|.. ++..+|||||... ...+..+.....+|++||+||.|.||+||++.|.+.+ .
T Consensus 24 ~m~i~~~~-~~~~~~nsyli~~~~~~~~vlID~g~~~---~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~ 97 (466)
T 3r2u_A 24 AMFFKQFY-DKHLSQASYLIGCQKTGEAMIIDPIRDL---SSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKL--N 97 (466)
T ss_dssp CEEEEEEE-ETTTTEEEEEEEETTTCEEEEESCCSCC---HHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH--C
T ss_pred CeEEEEEe-cCCccceEEEEEeCCCCEEEEEcCCCCH---HHHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhh--C
Confidence 46666553 2334789999964 5789999999532 1122223323346999999999999999999999865 5
Q ss_pred ccEEechhhHhhhhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEec-CCCccCceEEEEEEC-----CeEEEEEe
Q 004964 82 APVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKD-----GEDVIYAV 155 (721)
Q Consensus 82 ~~Iy~T~pt~~l~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~~Gs~~~~I~~~-----~~~IlytG 155 (721)
++||++..+........ .......++.++.+.+ ++++++++. .||++|+++|.+... +.+++|||
T Consensus 98 a~v~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~----g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftG 168 (466)
T 3r2u_A 98 ANIYVSGESDDTLGYKN-----MPNHTHFVQHNDDIYV----GNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSG 168 (466)
T ss_dssp CEEEEECCSCTTTSCCS-----CCTTCEEECTTCEEEE----TTEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEE
T ss_pred CeEEECcchhhhhcccc-----CCCCCEEeCCCCEEEE----CCEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEEC
Confidence 89999986543221100 0114678899999999 688888875 699999999999752 34699999
Q ss_pred cCCCc
Q 004964 156 DYNRR 160 (721)
Q Consensus 156 D~~~~ 160 (721)
|+-+.
T Consensus 169 D~lf~ 173 (466)
T 3r2u_A 169 DFIFV 173 (466)
T ss_dssp TTBCS
T ss_pred CcccC
Confidence 98654
No 63
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.30 E-value=4.9e-12 Score=139.24 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=98.0
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
+-|||||..++..+|||+|.... ....+..+. ..+.+||+|++||.|.||+|+++.+.++++..++||++.....+.
T Consensus 51 syNsYLI~~~~~~vLIDtg~~~~-~~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l 129 (410)
T 4dik_A 51 SYNAYLVKLNGANVLIDGWKGNY-AKEFIDALSKIVDPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLL 129 (410)
T ss_dssp EEEEEEEECSSCEEEECCCCGGG-HHHHHHHHTTTSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHH
T ss_pred EEEEEEEEECCeEEEEeCCCcch-HHHHHHHHHHhcCcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHH
Confidence 44799999888999999995321 111222222 235689999999999999999999998777789999999888765
Q ss_pred hccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecC-C-CccCceEEEEEECCeEEEEEecCCC
Q 004964 95 LLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVA-G-HLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a-G-H~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
+.. + ....+..++.++.+++ ++.+++++.+ | |++|+..++. .+++||||+..
T Consensus 130 ~~~----~-~~~~~~~v~dGd~l~l----G~~~L~~i~tPg~H~p~~~~~y~----~~iLFsgD~fg 183 (410)
T 4dik_A 130 EGF----Y-GIKDVTVVKDGEEREI----GGKKFKFVMTPWLHWPDTMVTYL----DGILFSCDVGG 183 (410)
T ss_dssp HHH----H-CCCCEEECCTTCEEEE----TTEEEEEEECTTSSSTTCEEEEE----TTEEEEETTTC
T ss_pred Hhh----c-CccceeEecCCCEEee----cceEEEEecCCCCCCCCCeeEEe----CCceEcccccc
Confidence 422 2 2345788999999999 6778877643 5 9999988775 36999999753
No 64
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=99.29 E-value=2e-12 Score=131.01 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhhc
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~~ 96 (721)
+.+||+|+.++..+|||||+........+..+.....+|++|++||.|.||+||++.+.+ . .++||++..+..+.+.
T Consensus 32 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~~~~ 108 (228)
T 1jjt_A 32 PKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNS-R--SIPTYASELTNELLKK 108 (228)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHH-T--TCCEEEEHHHHHHHHH
T ss_pred cceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHcCCCeeEEEeCCCChhhhccHHHHHh-C--CCEEEEChHHHHHHHh
Confidence 578999999999999999974211111122232223379999999999999999999876 2 6899999988765432
Q ss_pred cchHhhhcCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 97 TMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 97 ~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
.. .... ...+. ++.+.+ ++..++++ .+||++|++++.+ ++.+++|+||+-.
T Consensus 109 ~~----~~~~-~~~~~-g~~~~l----~~~~i~~~~~~pGHt~g~~~~~~--~~~~~lf~GD~~~ 161 (228)
T 1jjt_A 109 DG----KVQA-TNSFS-GVNYWL----VKNKIEVFYPGPGHTPDNVVVWL--PERKILFGGCFIK 161 (228)
T ss_dssp TT----CCCC-SEEEC-SSCCEE----ETTTEEEECCCCSSSTTCCEEEE--TTTTEEEEETTCC
T ss_pred cC----CcCc-ccccc-CcceEe----cCceEEEEecCCCCCCCcEEEEE--CCCcEEEEecccc
Confidence 11 0000 11221 344445 34445553 5799999999887 4568999999864
No 65
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.28 E-value=1.3e-11 Score=136.15 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=91.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCC--cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~ 94 (721)
..+||+|+. +..+|||||...... ...+..+ ..+.+|++||+||.|.||+||++.+.+.++ .++||++..+....
T Consensus 40 ~~n~~li~~-~~~iLID~G~~~~~~~~~~~l~~~-~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~ 116 (414)
T 2q9u_A 40 SYNSYFIDD-ECPTVIDSVKYPFAEEWLSRIAAC-CPLDKIKYVVMNHAEGDHASSLKDHYHKFT-NATFVCTKKCQEHL 116 (414)
T ss_dssp EECCEEECS-SSCEEECCCCGGGHHHHHHHHHHH-SCGGGCCEEECSCCSGGGTTTHHHHGGGST-TCEEEECHHHHHHH
T ss_pred ceeEEEEEC-CCEEEEeCCCcccHHHHHHHHHHh-cCcccCCEEEeCCCCcchhcCHHHHHHHCC-CCEEEECHHHHHHH
Confidence 467899984 779999999732110 0111222 234689999999999999999999987543 68999999887754
Q ss_pred hccchHhhh-cCCCeEEecCCCEEEeccccCCeEEEEe--cCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 95 LLTMYDQYL-SRRSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 95 ~~~l~d~~~-~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
.. .+. ....+..++.++.+.+ ++.+++++ +.||++|++++.+ .+.+++|+||+..
T Consensus 117 ~~----~~~~~~~~~~~~~~g~~~~l----g~~~~~~~~~p~gHt~~~~~~~~--~~~~~lf~GD~~~ 174 (414)
T 2q9u_A 117 KI----LYGMEKATWLIVDDKYTLKI----GKRTLKFIPVPLLHWPDSTFTYC--PEDKILFSNDGFG 174 (414)
T ss_dssp HH----HHCCTTCCEEECCTTCCEEC----SSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTTC
T ss_pred HH----HhCCCCCeeEEeCCCCEEEE----CCeEEEEEeCCCCCCCCceEEEE--CCCeEEEEccccc
Confidence 32 111 1124677888888888 56666655 4489999987654 5678999999653
No 66
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.22 E-value=1.6e-12 Score=135.42 Aligned_cols=135 Identities=12% Similarity=0.148 Sum_probs=86.9
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc-CCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhhhh
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l~~ 95 (721)
+.|||+|..++..+|||+|++.......+..+. .....|++|++||.|.||+||+..|.+. .+++|++..+..+.+
T Consensus 74 ~~N~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~ 150 (270)
T 4eyb_A 74 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLAP 150 (270)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHHGG
T ss_pred ceEEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhcCcHHHHHHC---CCeEEECHHHHHHHH
Confidence 578999999999999999975321111122221 1235799999999999999999999874 689999998887654
Q ss_pred ccchHhhhcCCCeEEecCCCEEEec--cccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCC
Q 004964 96 LTMYDQYLSRRSVTRLTYSQNYHLS--GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 96 ~~l~d~~~~~~~i~~v~y~q~~~l~--~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
..... .............+.-. -..+++.+.....||++|++++.+ +..+++|+||+-.
T Consensus 151 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pgHT~g~~~~~~--~~~~vLfsGD~l~ 211 (270)
T 4eyb_A 151 QEGMV---AAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGI--DGTDIAFGGCLIK 211 (270)
T ss_dssp GGTCC---CCSEEECBCTTSBBCGGGSTTCTTEEEECCCSSSSSSCCEEEE--TTSSEEECTTTCC
T ss_pred hcCcc---ccccccCCCCceeecCceeeecCceeEEecccccCCCCEEEEe--cCCcEEEEeCeec
Confidence 21110 00001111111111000 012456665566899999987766 6778999999754
No 67
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=99.14 E-value=3.7e-11 Score=119.23 Aligned_cols=123 Identities=12% Similarity=-0.011 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccEEechhhHhh
Q 004964 14 FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (721)
Q Consensus 14 ~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~Iy~T~pt~~l 93 (721)
...+.+||+|+.++..+|||||.... ..+..+... .+|++|++||. ||+||++.+.+++ .++||++..+...
T Consensus 20 ~~~~~n~~li~~~~~~iliD~g~~~~---~~~~~l~~~-g~i~~ii~TH~--DH~gg~~~~~~~~--~a~v~~~~~~~~~ 91 (201)
T 2p97_A 20 RNIDFNGFAWIRPEGNILIDPVALSN---HDWKHLESL-GGVVWIVLTNS--DHVRSAKEIADQT--YTKIAGPVAEKEN 91 (201)
T ss_dssp TTEEEEEEEECCTTCCEEESCCCCCH---HHHHHHHHT-TCCSEEECSSG--GGCTTHHHHHHHS--CCEEEEEGGGTTS
T ss_pred CCcceeEEEEEeCCeeEEEECCCCcH---HHHHHHHhc-CCCCEEEECCc--hhhhhHHHHHHhc--CCEEEEcHhHhhh
Confidence 34478899999888899999994221 122222222 28999999999 9999999998765 4899999887654
Q ss_pred hhccchHhhhcCCCeEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEECCeEEEEEecCCCcC
Q 004964 94 GLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 161 (721)
Q Consensus 94 ~~~~l~d~~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~ 161 (721)
.+. .....++.++.+ . .++++...++||++|++++.+. + +++|+||+-...
T Consensus 92 ~~~---------~~~~~~~~g~~~--~---~~~~~~~~p~gHt~g~~~~~~~--~-~~lf~GD~~~~~ 142 (201)
T 2p97_A 92 FPI---------YCDRWLSDGDEL--V---PGLKVMELQGSKTPGELALLLE--E-TTLITGDLVRAY 142 (201)
T ss_dssp CSS---------CCSEEECTTCBS--S---TTEEEEEECSSSSTTEEEEEET--T-TEEEECSSEEBS
T ss_pred hcc---------cCceecCCCCEE--c---ceEEEEECCCCCCCCcEEEEEc--C-CEEEECcccccc
Confidence 321 012445555543 2 3688887888999999998875 4 899999986543
No 68
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.91 E-value=8.2e-10 Score=128.75 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=90.1
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCccEEEecCCchhhhCchHHHHHhc---CCCccEEechhhH
Q 004964 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQL---GLSAPVFSTEPVY 91 (721)
Q Consensus 17 g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~Id~IlLTH~H~DHiGgLp~L~~~~---g~~~~Iy~T~pt~ 91 (721)
..+||+|+.++..||||||.........+..+. ....+|++|++||.|.||+||++.+.+.. ...++||++..+.
T Consensus 122 ~~N~ylI~~~~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~ 201 (658)
T 2cfu_A 122 LANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFM 201 (658)
T ss_dssp SSCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHH
T ss_pred CeEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHH
Confidence 578999998888999999975321111122221 12468999999999999999999876420 1368999998875
Q ss_pred hhhhc--c-----c-hH---hhhc-------------------C------CCeEEe-cCCCEEEeccccCCeEEEEec-C
Q 004964 92 RLGLL--T-----M-YD---QYLS-------------------R------RSVTRL-TYSQNYHLSGKGEGIVVAPHV-A 133 (721)
Q Consensus 92 ~l~~~--~-----l-~d---~~~~-------------------~------~~i~~v-~y~q~~~l~~~~~gl~it~~~-a 133 (721)
+.... . + .. .+.. . .....+ +.++.+.+ +|.+++++. .
T Consensus 202 ~~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~~~~p~~~~~~dG~~l~l----gg~~l~vi~tP 277 (658)
T 2cfu_A 202 EAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVL----DGVPFTFQNTP 277 (658)
T ss_dssp HHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEE----TTEEEEEEECT
T ss_pred HHHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCccCCCCcEEEecCceEEEE----CCEEEEEEeCC
Confidence 53210 0 0 00 0000 0 011334 35666777 687887754 6
Q ss_pred CC-ccCceEEEEEECCeEEEEEecCCCc
Q 004964 134 GH-LLGGTVWKITKDGEDVIYAVDYNRR 160 (721)
Q Consensus 134 GH-~~Gs~~~~I~~~~~~IlytGD~~~~ 160 (721)
|| ++|++++.+ +..+++|+||.-..
T Consensus 278 GHhTpg~i~~~~--p~~~vLftGD~v~~ 303 (658)
T 2cfu_A 278 GTESPAEMNIWL--PRQKALLMAENVVG 303 (658)
T ss_dssp TSSSSSBEEEEE--TTTTEEECTTTSCS
T ss_pred CCCCCCcEEEEE--CCCCEEEEeccccc
Confidence 88 999998887 56789999997653
No 69
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=98.80 E-value=3.6e-09 Score=110.82 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=64.4
Q ss_pred eEEEEEee-------cCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHH
Q 004964 4 SVQVTPLS-------GVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (721)
Q Consensus 4 ~m~~t~lg-------G~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~ 76 (721)
+++||+|. +.....++|++|+.++.+||||||..... ...+..++..+.+||+||+||.|.||+||++.+.+
T Consensus 12 ~~~it~l~dn~~~~~~~~~~~g~s~li~~~~~~iLiD~G~~~~~-~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~ 90 (284)
T 2p4z_A 12 SVEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENF-IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLE 90 (284)
T ss_dssp CCEEEEEECSBCCSTTCCBCSSCEEEEEETTEEEEECCCSSTHH-HHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHH
T ss_pred CEEEEEEEeCCCCCcCcccCCEEEEEEEECCeEEEEeCCCCHHH-HHHHHHcCCChhhCCEEEECCCCchhhccHHHHHH
Confidence 46788773 11233678999999999999999973210 12233444556789999999999999999999887
Q ss_pred hcCCCccEEechhhHh
Q 004964 77 QLGLSAPVFSTEPVYR 92 (721)
Q Consensus 77 ~~g~~~~Iy~T~pt~~ 92 (721)
.++ +++||++..+.+
T Consensus 91 ~~~-~~~v~~~~~~~~ 105 (284)
T 2p4z_A 91 RNP-EVKIYTHKEILN 105 (284)
T ss_dssp HCT-TCEEEEEGGGGS
T ss_pred HcC-CCceecCHHHHH
Confidence 543 689999988754
No 70
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=98.20 E-value=1.2e-09 Score=126.96 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=86.1
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCccccC--CCCCccEEEecCCchhhhCchHHHHHhc---CCCccEEechhhHh
Q 004964 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK--VASTIDAVLLSHPDTLHLGALPYAMKQL---GLSAPVFSTEPVYR 92 (721)
Q Consensus 18 ~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~--~~~~Id~IlLTH~H~DHiGgLp~L~~~~---g~~~~Iy~T~pt~~ 92 (721)
.|||+|+.++..||||||.........+..+.. ....|++|++||.|.||+||++.+.+.. ...++||++..+.+
T Consensus 133 ~N~~lI~~~~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e 212 (668)
T 2yhe_A 133 ANMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFME 212 (668)
Confidence 689999988889999999764322222333322 2468999999999999999999987520 13689999988632
Q ss_pred --hhhc------------cchHh-hhc---------------C-C-------CeEEecCCCEEEeccccCCeEEEEec-C
Q 004964 93 --LGLL------------TMYDQ-YLS---------------R-R-------SVTRLTYSQNYHLSGKGEGIVVAPHV-A 133 (721)
Q Consensus 93 --l~~~------------~l~d~-~~~---------------~-~-------~i~~v~y~q~~~l~~~~~gl~it~~~-a 133 (721)
+.+. .++.. +.. . . ....++.++.+.+ +|.+++++. .
T Consensus 213 ~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~dg~~l~l----gg~~l~vi~tP 288 (668)
T 2yhe_A 213 HAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTTATNATNTLVAPNVLIEKPYERHTV----DGVELEFQLTL 288 (668)
Confidence 1110 00000 000 0 0 0011223445555 577777653 4
Q ss_pred C-CccCceEEEEEECCeEEEEEecCCC
Q 004964 134 G-HLLGGTVWKITKDGEDVIYAVDYNR 159 (721)
Q Consensus 134 G-H~~Gs~~~~I~~~~~~IlytGD~~~ 159 (721)
| |++|++++.+ +..+++|+||.-.
T Consensus 289 G~Htpg~i~~~~--p~~~vLftGD~~~ 313 (668)
T 2yhe_A 289 GSEAPSDMNIYL--PQFKVLNTADNAP 313 (668)
Confidence 5 9999998877 4568999999755
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.33 E-value=1.4e-06 Score=89.94 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=53.5
Q ss_pred EEEEEeecCC------CCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhc
Q 004964 5 VQVTPLSGVF------NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (721)
Q Consensus 5 m~~t~lgG~~------~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~ 78 (721)
|++.+|.-.. .+-+.|++|+. ||||||..... ...+..++..+. |+|+|||.|.||+||++.+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~G~s~lie~----iLiD~G~~~~l-~~~l~~~gi~~~--~~IvlTH~H~DH~ggl~~l---- 81 (267)
T 3h3e_A 13 MRIHVLCDDSSQNGFESEHGFSVLVDS----VLFDTGKSDVF-LKNARKLGIDLP--KDVLISHGHYDHAGGLLYL---- 81 (267)
T ss_dssp EEEEEEECSCCCTTCCCCSSCEEEETT----EEECCCSSSHH-HHHHHHTTCCCC--SEEECSCSCHHHHGGGGGC----
T ss_pred eEEEEEecCCCCCCceeCcEeHHeeee----EEEECCCcHHH-HHHHHHCCcCcC--CEEEECCCChhhhCCHHHh----
Confidence 7888774322 33678899965 99999975310 112333343333 9999999999999999987
Q ss_pred CCCccEEechhhHh
Q 004964 79 GLSAPVFSTEPVYR 92 (721)
Q Consensus 79 g~~~~Iy~T~pt~~ 92 (721)
.+++||+++....
T Consensus 82 -~~~~v~~~~~~~~ 94 (267)
T 3h3e_A 82 -SGKRVWLRKEALD 94 (267)
T ss_dssp -CSCEEEEEGGGGS
T ss_pred -cCCEEEECHHHHH
Confidence 3689999987653
No 72
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=73.25 E-value=3.8 Score=43.37 Aligned_cols=66 Identities=5% Similarity=-0.015 Sum_probs=50.2
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCHH-----HHHHHHHHHhh-----ccCCceeecCCCcEEEEceeeeEEEE
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSAE-----ATEHLKQHCLK-----HVCPHVYTPQIEETIDVTSDLCAYKV 593 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~~-----~~~~l~~~~~~-----~~~~~v~~P~~ge~v~~~~~~~~~~v 593 (721)
.++.+.+....++..++|+++|++|.+.- ..+.+.+.+.+ .++.+++.+..|+++.+.++.+.+.+
T Consensus 257 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~~d~~~~~~ 332 (360)
T 2wyl_A 257 TDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEY 332 (360)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTTBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTTTCCBC
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEeeccccccCCCHHHHHHHHHhhhhhhcCCcceEEccCCcEEEecCCCCceee
Confidence 46889999999999999999999996541 24456666552 13578999999999999877665443
No 73
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=69.30 E-value=6 Score=39.69 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=45.4
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCH-----HHHHHHHHHHhhc-cCCceeecCCCcEEEE
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSA-----EATEHLKQHCLKH-VCPHVYTPQIEETIDV 584 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~-----~~~~~l~~~~~~~-~~~~v~~P~~ge~v~~ 584 (721)
.+|.+.+....++..++|+++|++|=+. ...+.|.+.+.+. ...++..|..||++++
T Consensus 202 ~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Ge~~~l 264 (264)
T 3rpc_A 202 SIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNNIESHVAVPEDGETITL 264 (264)
T ss_dssp CSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHHHHHHHTTCTTTEECCCTTCEEEC
T ss_pred CcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHHHHHHHcCCCCcEEecCCCCEEeC
Confidence 4688999999999999999999999864 4456677776542 2348999999999874
No 74
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=66.46 E-value=5.5 Score=42.48 Aligned_cols=62 Identities=6% Similarity=-0.027 Sum_probs=47.4
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCH-----HHHHHHHHHHhh-----ccCCceeecCCCcEEEEceeee
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSA-----EATEHLKQHCLK-----HVCPHVYTPQIEETIDVTSDLC 589 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~-----~~~~~l~~~~~~-----~~~~~v~~P~~ge~v~~~~~~~ 589 (721)
.+|.+.+....++..++|+++|++|.+. +..+.+.+.+.. .++.+++.+..|+++++..+.+
T Consensus 282 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~d~~ 353 (379)
T 3bv6_A 282 TDKMTSSDVLRAAESLDCQVVVPFHHDIWANFQNDPREIEVLWNMKKDRLQYQFAPFFWQVGGKYTYPTDKG 353 (379)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTSBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTTT
T ss_pred cccCCHHHHHHHHHHcCCCEEEEEeecccccccCCHHHHHHHHHhhhhhhcCCCceEEccCCcEEEecCCCC
Confidence 4688999999999999999999999653 233456555542 1356899999999999976554
No 75
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=52.60 E-value=8.2 Score=40.54 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=32.1
Q ss_pred EEEEecccccCHHHHHHHhhhcCCcEEEEec-CCHH
Q 004964 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVH-GSAE 556 (721)
Q Consensus 522 v~~id~~g~~D~rsl~~ii~~l~PrkliLv~-g~~~ 556 (721)
+..|-+|||++...|+.++..++|+++|=|| |+..
T Consensus 269 ~~~vh~S~Ha~~~EL~~~~~~~~P~~~iPvh~ge~~ 304 (336)
T 3zdk_A 269 IHVIPYSDHSSYSELRAFVAALKPCQVVPIVSRRPC 304 (336)
T ss_dssp EEEECCCSSCBHHHHHHHHHHHCCSCEEESCTTSCC
T ss_pred ceeeEecCCCCHHHHHHHHHHhCCCEEEEEECCcCc
Confidence 3569999999999999999999999999999 9953
No 76
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=44.79 E-value=25 Score=34.89 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=42.3
Q ss_pred cccCHHHHHHHhhhcCCcEEEEecCCHH-HHHHHHHHHhhccCCceeecCCCcEEE
Q 004964 529 GRADGRSIKTILSHVAPLKLVLVHGSAE-ATEHLKQHCLKHVCPHVYTPQIEETID 583 (721)
Q Consensus 529 g~~D~rsl~~ii~~l~PrkliLv~g~~~-~~~~l~~~~~~~~~~~v~~P~~ge~v~ 583 (721)
||..-+.+..++..++|+++|+.|-++. ..+.+.+.+++.++.+|+.+.-|++++
T Consensus 212 ~H~~~~~a~~~~~~~~~~~lil~H~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~~~ 267 (268)
T 1zkp_A 212 GHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWN 267 (268)
T ss_dssp TCCBHHHHHHHHHHTTCSEEEEESBCSSSCTHHHHHHHHTTCCSEEEECCTTCEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECCCCCCChHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 5888889999999999999999997652 334455555655556788888888875
No 77
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=38.41 E-value=52 Score=32.42 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=43.7
Q ss_pred cccccCHHHHHHHhhhcCCcEEEEecCCHHHH---HHHHHHHhhcc-CCceeecCCCcEEEE
Q 004964 527 YEGRADGRSIKTILSHVAPLKLVLVHGSAEAT---EHLKQHCLKHV-CPHVYTPQIEETIDV 584 (721)
Q Consensus 527 ~~g~~D~rsl~~ii~~l~PrkliLv~g~~~~~---~~l~~~~~~~~-~~~v~~P~~ge~v~~ 584 (721)
-.||...+.+..++..++|+++||.|=++.-. +.+.+.+++.+ +..|..+..|+++++
T Consensus 219 ~~~H~t~~~a~~~~~~~~~~~lvl~H~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~G~~~~~ 280 (280)
T 2e7y_A 219 YKNHAAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVFEM 280 (280)
T ss_dssp --CCCBHHHHHHHHHHHTCCEEEEESCCGGGHHHHHHHHHHHHHHCTTSEEEECCTTSCEEC
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeecCcCcchHHHHHHHHHHhCCCceEEEeCCCceeeC
Confidence 35899999999999999999999999987432 34444444433 568999999998764
No 78
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=38.13 E-value=43 Score=34.03 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=45.6
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCHH----HHHHHHHHHhhccCCceeecCCCcEEEEceeeeE
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSAE----ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCA 590 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~~----~~~~l~~~~~~~~~~~v~~P~~ge~v~~~~~~~~ 590 (721)
.||+..+....+...++|+++||.|=++. ..+.+.+.+++... +++.+.-|+++++......
T Consensus 245 ~~H~t~~~a~~~a~~~~~~~lil~H~s~~~~~~~~~~~~~e~~~~~~-~~~~a~dg~~~~l~~~~~~ 310 (320)
T 1y44_A 245 YYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFP-NSVAAYDFLEVNVPRGKLA 310 (320)
T ss_dssp TTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHHHCS-SEEECCTTCEEECCCC---
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeEcCCCCCcchHHHHHHHHHhCC-CcEeccCCCEEEecchhhh
Confidence 57899999999999999999999997763 22445555554333 6899999999998764443
No 79
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=32.90 E-value=82 Score=31.91 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=64.4
Q ss_pred CCcEEEeecccccccCCCcc-hHH-HHHHHHHHHHhcC-CeEEEeccC--chHHHHHHHHHHHHHHhcCC--------Cc
Q 004964 175 RPAVLITDAYNALHNQPPRQ-QRE-MFQDAISKTLRAG-GNVLLPVDS--AGRVLELLLILEDYWAEHSL--------NY 241 (721)
Q Consensus 175 ~~d~LI~est~~~~~~~~r~-~~e-~l~~~I~~~l~~g-G~VLIP~~~--~GR~qEll~~L~~~~~~~~l--------~~ 241 (721)
.+|++++|..-. ....... .+- .+++.+.++|+.| |+.++=+|. .+-..+++..|.+++..-.. ..
T Consensus 140 ~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~ 218 (277)
T 3evf_A 140 KCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLSRNSTH 218 (277)
T ss_dssp CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCC
T ss_pred CccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 579999875332 1111111 122 5678888999999 999999999 77889999999998875421 34
Q ss_pred cEEEEccchHHHHHHHHHHHhhhCHHHHHHHHh
Q 004964 242 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274 (721)
Q Consensus 242 pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~ 274 (721)
-+|+++....++..+..... ..+...+..
T Consensus 219 E~Y~V~~~r~n~~~~v~~~s----~~l~~r~~~ 247 (277)
T 3evf_A 219 EMYYVSGARSNVTFTVNQTS----RLLMRRMRR 247 (277)
T ss_dssp CEEEESSCCCCHHHHHHHHH----HHHHHHHHS
T ss_pred ceEEEEecCCCccchHHHHH----HHHHHHHhc
Confidence 69998887777776665542 334455543
No 80
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=32.30 E-value=66 Score=33.06 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=78.2
Q ss_pred EecCCCccCceEE-EEEECCeEEEEEecCCCcCcc--------------ccCccc---ccccCCCcEEEeecccccccCC
Q 004964 130 PHVAGHLLGGTVW-KITKDGEDVIYAVDYNRRKEK--------------HLNGTV---LESFVRPAVLITDAYNALHNQP 191 (721)
Q Consensus 130 ~~~aGH~~Gs~~~-~I~~~~~~IlytGD~~~~~~~--------------~l~~~~---l~~l~~~d~LI~est~~~~~~~ 191 (721)
.+.-|=.+|+... .....+-+-||+-|.+..... ...+.+ +++ ..+|++++|-. ...+
T Consensus 98 VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~-~~~D~ivcDig---eSs~ 173 (321)
T 3lkz_A 98 VIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS-ECCDTLLCDIG---ESSS 173 (321)
T ss_dssp EEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC-CCCSEEEECCC---CCCS
T ss_pred EEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC-CCCCEEEEECc---cCCC
Confidence 3444667776544 223345567778887765210 011111 122 34799998875 2223
Q ss_pred Cc---chHH-HHHHHHHHHHhcC-CeEEEeccCc--hHHHHHHHHHHHHHHhcC----C----CccEEEEccchHHHHHH
Q 004964 192 PR---QQRE-MFQDAISKTLRAG-GNVLLPVDSA--GRVLELLLILEDYWAEHS----L----NYPIYFLTYVSSSTIDY 256 (721)
Q Consensus 192 ~r---~~~e-~l~~~I~~~l~~g-G~VLIP~~~~--GR~qEll~~L~~~~~~~~----l----~~pI~~~s~~a~~~~~~ 256 (721)
+. ..|. +.++.+.+.+..+ |...|-++.- ..++|.+..|...|.... + ..-+|++|+.+.+++.-
T Consensus 174 ~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lvr~P~SRnst~EmY~vsGa~gNIV~a 253 (321)
T 3lkz_A 174 SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRASGNVVHS 253 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEETTCCSCHHHH
T ss_pred ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeEeCCCCCCCcceEEEEecCCCCeeee
Confidence 22 2233 5677778888877 8888888886 778888888887775442 1 34699999999888775
Q ss_pred HHHH
Q 004964 257 VKSF 260 (721)
Q Consensus 257 ~~~~ 260 (721)
.+..
T Consensus 254 Vn~t 257 (321)
T 3lkz_A 254 VNMT 257 (321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 81
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=24.22 E-value=83 Score=31.95 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCCcEEEeecccccccCCCcc-hHH-HHHHHHHHHHhcC--CeEEEeccC--chHHHHHHHHHHHHHHhcCC--------
Q 004964 174 VRPAVLITDAYNALHNQPPRQ-QRE-MFQDAISKTLRAG--GNVLLPVDS--AGRVLELLLILEDYWAEHSL-------- 239 (721)
Q Consensus 174 ~~~d~LI~est~~~~~~~~r~-~~e-~l~~~I~~~l~~g--G~VLIP~~~--~GR~qEll~~L~~~~~~~~l-------- 239 (721)
.++|++++|..-. ....... .+- .+++...++|+.| |+.++=+|. .+-..+++..|.+++..-..
T Consensus 155 ~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~ 233 (282)
T 3gcz_A 155 IPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVPLSRNS 233 (282)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTT
T ss_pred CCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcCCCccc
Confidence 4679999886433 2211111 222 5678888899999 999999999 78889999999998875421
Q ss_pred CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHh
Q 004964 240 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 274 (721)
Q Consensus 240 ~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~ 274 (721)
..-+|+++....++..+.... +..+...+..
T Consensus 234 S~E~Y~V~~~r~n~~~~v~~~----s~~l~~r~~~ 264 (282)
T 3gcz_A 234 THEMYWVSGTRTDVVGTVSNV----SRLLTRRMLN 264 (282)
T ss_dssp CCCEEEETTCCCCSHHHHHHH----HHHHHHHHHS
T ss_pred CcceeEEEecCCCccchHHHH----HHHHHHHHhc
Confidence 345898887766666655543 2334444543
No 82
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=23.89 E-value=1.6e+02 Score=30.04 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCcEEEeecccccccCCCc-chHH-HHHHHHHHHHhcC-CeEEEeccC--chHHHHHHHHHHHHHHhcCC--------Cc
Q 004964 175 RPAVLITDAYNALHNQPPR-QQRE-MFQDAISKTLRAG-GNVLLPVDS--AGRVLELLLILEDYWAEHSL--------NY 241 (721)
Q Consensus 175 ~~d~LI~est~~~~~~~~r-~~~e-~l~~~I~~~l~~g-G~VLIP~~~--~GR~qEll~~L~~~~~~~~l--------~~ 241 (721)
.+|++++|..-. ...+.. ..+. .|++...++|+.| |+.++=+|. .+-..+++..|.+++..-.. ..
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KPaSR~~S~ 225 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPFSRNSTH 225 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCC
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeCCCCCCCh
Confidence 578988875332 111111 1222 6778888899999 999999999 88889999999999875421 35
Q ss_pred cEEEEccchHHHHHHHHHHH
Q 004964 242 PIYFLTYVSSSTIDYVKSFL 261 (721)
Q Consensus 242 pI~~~s~~a~~~~~~~~~~~ 261 (721)
-+|+++....++..+.....
T Consensus 226 E~Y~V~~~r~n~~~~v~~~~ 245 (300)
T 3eld_A 226 EMYYISGARNNITHMVNTTS 245 (300)
T ss_dssp CEEEESSCCCCHHHHHHHHH
T ss_pred HHeeeccCCCCcchhHHHHH
Confidence 79999988878877776653
No 83
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor, colony-stimulating factor, cytokine; NMR {Homo sapiens} SCOP: a.26.1.2
Probab=23.56 E-value=37 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=27.3
Q ss_pred cccccCCCCCCCCCCceEEccccccchHHHHHh
Q 004964 627 MLSLLPISTPAPPHKSVLVGDLKMADLKPFLSS 659 (721)
Q Consensus 627 ~~~l~p~~~~~~~~~~~~iGd~rL~~lk~~L~~ 659 (721)
.++.+|..+.++...+++|-|-.|.|||++|..
T Consensus 68 l~pcLPtat~~pt~~pI~I~~~dl~DFr~KL~f 100 (112)
T 1jli_A 68 LLPCLPLATAAPTRHPIHIKDGDWNEFRRKLTF 100 (112)
T ss_dssp HGGGSCCTTSSCCSCCCCCCSSCHHHHHHHHHH
T ss_pred ccccCCcCcCCCCCCCeecccCCHHHHHHHHHH
Confidence 356888887778889999977789999999863
No 84
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=22.10 E-value=1.4e+02 Score=29.81 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=41.0
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCHHH----HHHHHHHHhhccCCceeecCCCcEEEE
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEA----TEHLKQHCLKHVCPHVYTPQIEETIDV 584 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~~~----~~~l~~~~~~~~~~~v~~P~~ge~v~~ 584 (721)
.||+.-+....+...++++++||.|=++.. .+.+.+.+++... .++.+.-|.++++
T Consensus 247 ~~H~t~~~a~~~a~~~~~~~lvl~H~s~~~~~~~~~~~~~e~~~~~~-~~~~a~Dg~~~~~ 306 (306)
T 2cbn_A 247 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFNV 306 (306)
T ss_dssp TTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTTCS-CEEECCTTCEEEC
T ss_pred cCCCCHHHHHHHHHHcCCcEEEEEeecCCCCCCchhHHHHHHHHhCC-CcEEcccccEeeC
Confidence 578999999999999999999999987642 2334444444332 5888888887763
No 85
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=20.66 E-value=67 Score=33.79 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=38.9
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCHHH-------------HHHHHHHHhhcc-CCceeecCCCcEEEEce
Q 004964 528 EGRADGRSIKTILSHVAPLKLVLVHGSAEA-------------TEHLKQHCLKHV-CPHVYTPQIEETIDVTS 586 (721)
Q Consensus 528 ~g~~D~rsl~~ii~~l~PrkliLv~g~~~~-------------~~~l~~~~~~~~-~~~v~~P~~ge~v~~~~ 586 (721)
.||+..+....+...+++++|||.|=++.- .+.|.+.+++.+ +.+++.+.-|+++++..
T Consensus 287 ~~H~t~~~A~~~a~~~~~k~lil~H~s~ry~~~~~~~~~~~~~~~~~~~ea~~~f~~~~~~~a~dg~~~~i~~ 359 (368)
T 3zwf_A 287 HGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIPI 359 (368)
T ss_dssp TTCCCHHHHHHHHHHTTCSEEEEECBCCCC---------------------------CEEEECCTTCEEECCC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeeCcccCccccccccccchHHHHHHHHHHhcCCCceEEecCCcEEEeec
Confidence 579999999999999999999999987532 345555555544 33788888999888853
Done!