Query 004965
Match_columns 721
No_of_seqs 135 out of 229
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 2E-230 5E-235 1992.1 13.1 703 11-721 1-734 (762)
2 KOG1107 Membrane coat complex 100.0 7E-215 2E-219 1754.2 56.2 685 27-721 1-689 (760)
3 KOG3682 Predicted membrane pro 100.0 4.3E-43 9.4E-48 386.5 42.4 531 20-638 146-759 (930)
4 KOG1107 Membrane coat complex 99.5 2.1E-13 4.5E-18 153.8 20.0 197 36-268 148-346 (760)
5 KOG1410 Nuclear transport rece 82.0 1E+02 0.0022 37.2 18.6 99 318-421 253-353 (1082)
6 PF03000 NPH3: NPH3 family; I 64.3 1E+02 0.0022 33.0 12.4 57 333-397 193-249 (258)
7 KOG4524 Uncharacterized conser 53.8 4.9E+02 0.011 32.9 16.8 53 481-538 801-856 (1014)
8 KOG2274 Predicted importin 9 [ 51.6 2.9E+02 0.0063 34.6 14.4 139 367-506 612-792 (1005)
9 PF08767 CRM1_C: CRM1 C termin 40.3 2.4E+02 0.0052 30.9 10.9 149 341-493 89-247 (319)
10 KOG1422 Intracellular Cl- chan 36.5 34 0.00074 35.4 3.3 72 63-152 124-201 (221)
11 KOG2561 Adaptor protein NUB1, 34.3 64 0.0014 36.9 5.2 29 127-156 249-277 (568)
12 PF08673 RsbU_N: Phosphoserine 32.9 3.3E+02 0.0071 23.8 8.4 55 319-379 18-72 (77)
13 PF14677 FANCI_S3: FANCI solen 31.8 4.7E+02 0.01 27.3 10.9 110 258-396 105-218 (219)
14 PF06743 FAST_1: FAST kinase-l 27.9 95 0.0021 26.3 4.2 44 324-371 20-64 (71)
15 KOG0889 Histone acetyltransfer 26.1 2.2E+03 0.047 31.7 17.7 112 259-377 1958-2072(3550)
16 PF14675 FANCI_S1: FANCI solen 25.6 7.9E+02 0.017 25.7 12.9 142 368-536 7-162 (223)
17 PF03474 DMA: DMRTA motif; In 25.6 67 0.0014 24.5 2.4 24 259-283 5-28 (39)
18 KOG1410 Nuclear transport rece 24.9 7E+02 0.015 30.6 11.5 50 316-368 178-229 (1082)
19 PF14223 UBN2: gag-polypeptide 24.6 4.2E+02 0.0091 24.0 8.2 53 219-272 31-83 (119)
20 COG2147 RPL19A Ribosomal prote 21.7 1.6E+02 0.0034 28.9 4.7 45 37-81 96-145 (150)
21 PF11864 DUF3384: Domain of un 21.7 1.3E+03 0.027 26.7 19.7 90 442-537 264-356 (464)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=2.4e-230 Score=1992.09 Aligned_cols=703 Identities=55% Similarity=0.899 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchh
Q 004965 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (721)
Q Consensus 11 k~l~ea~~~Vk~q~~~Mkr~ld~~~l~~aLkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~d 90 (721)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCC
Q 004965 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (721)
Q Consensus 91 LYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g 170 (721)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|++|++|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 778899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHhhhchhhhhhhccCCHHHHhhhcchHHHHHHHhcc
Q 004965 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (721)
Q Consensus 171 ~v~dsi~Fll~NF~EMNkLWVRlQhqG~~rer~~r~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~ 250 (721)
++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhHhHhhCCchhhHHhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchh-----------hhH
Q 004965 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (721)
Q Consensus 251 D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~v~~Il~~L~~RL~~~~~~~~~~i~~~-----------~~~ 319 (721)
|++||||||||||||||||||++||++||++|++++|+||+++|+++|||||++|+.+++++.++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999877654321 268
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC---CCCCChHHHHHHHHHH
Q 004965 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGE---GKLEDNRATKQIVALL 396 (721)
Q Consensus 320 ~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~---~~~~~~~~~~~l~~lL 396 (721)
++|++||+++.++++++|++|++|++++++|+++|+++|||++++|||.+|+.|++++... +...++++.++|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 3344566778999999
Q ss_pred HchhhhchhHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCC----
Q 004965 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (721)
Q Consensus 397 ~~pl~~~~~~~~vl~l~~f~~Ll~~l~~~~rk~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~---- 472 (721)
+.|+++|.++.++++|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCC-------C
Q 004965 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENP-------F 545 (721)
Q Consensus 473 ~~~~e~~~eq~lv~r~ihli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~-------~ 545 (721)
.+++||.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|||+|+++..+... .
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~ 559 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD 559 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence 478899999999999999999999999999999999999999999999999999999999999998765210 1
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHH
Q 004965 546 GEEGSTTPKKVFQLLNQTIETLYGVP-APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLI 624 (721)
Q Consensus 546 ~~~~~~~~kk~f~fv~~~i~~l~~~~-~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~i 624 (721)
.++...+++++|+|||+||+.|.+.. .++++||||||||++||++|++++|||||+|||++|||+|+||++|++||.+|
T Consensus 560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i 639 (762)
T PF03635_consen 560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI 639 (762)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 11111346899999999999996543 48999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCC-----CCCcchhHHHHHHHHHHHHHHHHH
Q 004965 625 IGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQ-----DNMKDGERVLLCLKRALRIANAAQ 699 (721)
Q Consensus 625 i~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~-----~~~~d~krVleCLqkslkiA~~~~ 699 (721)
||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. +.+||||||+|||||||||||+||
T Consensus 640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999863 369999999999999999999999
Q ss_pred hhhhccCCCCCchhhHHhhccC
Q 004965 700 QMSNATRGSTGSVTLFVEILNK 721 (721)
Q Consensus 700 d~~~~~~~~~~~~~LfveiLn~ 721 (721)
| +.++++|||||||+
T Consensus 720 d-------~~~~~~LfveILn~ 734 (762)
T PF03635_consen 720 D-------PSQSVQLFVEILNR 734 (762)
T ss_dssp S-------HHHHHHHHHHHHHH
T ss_pred C-------cchhHHHHHHHHHH
Confidence 9 99999999999995
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-215 Score=1754.19 Aligned_cols=685 Identities=69% Similarity=1.060 Sum_probs=661.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchhHHHHHHHhcchhHHHH
Q 004965 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (721)
Q Consensus 27 Mkr~ld~~~l~~aLkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIlPRLY 106 (721)
|+||||+||+||||||+++||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 004965 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (721)
Q Consensus 107 LmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~v~dsi~Fll~NF~EM 186 (721)
||||||++|++++++|+|||||||+|||||||||+||||||+||+||+|++||+.|+.+++....+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877777889999999999999
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHHHHHhhhchhhhhhhccCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhC
Q 004965 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (721)
Q Consensus 187 NkLWVRlQhqG~~rer~~r~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvF 266 (721)
||||||||||||+||||||++||+|||||||+|||||||++|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 004965 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (721)
Q Consensus 267 PDefHl~TL~~lL~~~~~l~~~V~v~~Il~~L~~RL~~~~~~~~~~i~~~~~~~lf~~f~~~i~~l~~~~~~l~~~d~i~ 346 (721)
|||||++||+.+|++|.+++|+||++.++.+|++||++|+++++++.|....+.+|++||.++.+++++||++|+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887766689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHH--HHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchhHHHHHcCCCchHHHhcCCc
Q 004965 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (721)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~~l~~ 424 (721)
+++|+++|+++|||++.+|+|++| +.|.......+...+.+..+++.++|..|++.|+++.++++|++|++++..+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 888888877777778888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 004965 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (721)
Q Consensus 425 ~~rk~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~~~d~e~q~~~l 504 (721)
++++.||..|++++++.++.+++.++++.+|+++++|++|.++.|.++.|+++|.+||++||++||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004965 505 CTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCA 584 (721)
Q Consensus 505 ~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~~~~~~lkLyLq~A 584 (721)
..+|++|.+||++ ++||+||+||++|+|+|+++..++....|+ ....+++|+|+.+| +.+..++.++++||||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~A 557 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQCA 557 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHHH
Confidence 9999999999986 999999999999999999998876654444 34468999999999 44567789999999999999
Q ss_pred HHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhccCchhhhHHHH
Q 004965 585 EAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVY 664 (721)
Q Consensus 585 ~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav~ 664 (721)
++||+|+++++|||||+|||++|||+|||||+|++||.+|||||++||||++||||+|+||||+||||||||||||||||
T Consensus 558 ~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaVy 637 (760)
T KOG1107|consen 558 EAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAVY 637 (760)
T ss_pred HhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCC--CCCCcchhHHHHHHHHHHHHHHHHHhhhhccCCCCCchhhHHhhccC
Q 004965 665 ACSHLFWVDD--QDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNK 721 (721)
Q Consensus 665 ~cshL~w~~~--~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~LfveiLn~ 721 (721)
+||||||+++ ++.++|||||+||||||||||++||| |..+++||||||||
T Consensus 638 tcsHLfW~~~~ngE~l~dGkRVleCLkkAlkIA~qcmd-------~~~~vqLFIEILnr 689 (760)
T KOG1107|consen 638 TCSHLFWSGRTNGEKLKDGKRVLECLKKALKIAQQCMD-------NLRQVQLFIEILNR 689 (760)
T ss_pred eeehhhhcccCCccccCchHHHHHHHHHHHHHHHHHHh-------hccchhHHHHHHHH
Confidence 9999999987 56799999999999999999999999 99999999999996
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=100.00 E-value=4.3e-43 Score=386.53 Aligned_cols=531 Identities=17% Similarity=0.179 Sum_probs=422.6
Q ss_pred HHHhHHHHHHHhccccHHHHHHHHHHHHHh-hhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCC----C-------
Q 004965 20 LQQNAFYMHRALDSNNLRDALKYSAQMLSE-LRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC----S------- 87 (721)
Q Consensus 20 Vk~q~~~Mkr~ld~~~l~~aLkhas~mL~E-LRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~----~------- 87 (721)
|-+++--.+++-..++-.+++|.....-+- +-|+.+ .+|+.-|+.++|.|+.+|+.++++++... +
T Consensus 146 I~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~~~ 223 (930)
T KOG3682|consen 146 ILELSTKSIRAWSLDNTVENLKSDISSFKLLLDTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNVKK 223 (930)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHhhhhhhhhccchhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhhhh
Confidence 555555566666666677777766443332 345555 99999999999999999999999986521 1
Q ss_pred -----------------chhHHHHHHH-------------hcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 004965 88 -----------------IIDLYELVQH-------------AGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGI 137 (721)
Q Consensus 88 -----------------l~dLYE~VQy-------------agnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGV 137 (721)
-.+..|...- .....||-||+.+|..|+-|+-...++|.|.||+-|.||.
T Consensus 224 ~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~rg~ 303 (930)
T KOG3682|consen 224 ASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFRGE 303 (930)
T ss_pred hHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcc
Confidence 1233443332 2368999999999999999999877789999999999999
Q ss_pred cchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHhh
Q 004965 138 QHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVG 217 (721)
Q Consensus 138 QhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRlQhqG~~rer~~r~~ER~eL~iLVG 217 (721)
|+|+..+|+|+|+++++...-|.. .|+++.++-.++.-|...|- .
T Consensus 304 ~dPlvs~yar~y~~~~~~~i~~~~-------~~yL~k~~~d~l~~f~~~~~----------------------------d 348 (930)
T KOG3682|consen 304 QDPLVSDYARNYFLKLSEIIDIPI-------RFYLEKSMIDCLKFFDAANL----------------------------D 348 (930)
T ss_pred CCchHHHHHHHHHHHHhhhcCcch-------HHHHHHHHHHHHHHHHHHhH----------------------------H
Confidence 999999999999999998765543 35566665555555554322 2
Q ss_pred hchhhhhhhccCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhHHhHHHHHhhccccCCCCCHHHHHHH
Q 004965 218 KNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSR 297 (721)
Q Consensus 218 ~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~v~~Il~~ 297 (721)
+ +.|++-.-|.+.+.|...+-|++ +|+|.|++---|.+-|..-+++-+++ |-||..++++
T Consensus 349 ~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~~lLh~ 408 (930)
T KOG3682|consen 349 I-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVMELLHR 408 (930)
T ss_pred H-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHHHHHHH
Confidence 2 44555667889999999999987 79999999999999988665554333 2237788888
Q ss_pred HHHHHHH-HHh------------hccCCCc------------------hhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 004965 298 LMERLSN-YAA------------SSTEVLP------------------EFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (721)
Q Consensus 298 L~~RL~~-~~~------------~~~~~i~------------------~~~~~~lf~~f~~~i~~l~~~~~~l~~~d~i~ 346 (721)
++.-|+. +++ +++.|.| +++..++.+..|..+.++-+ ++||+.
T Consensus 409 ~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------~qdyv~ 482 (930)
T KOG3682|consen 409 KKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------FQDYVD 482 (930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------HHHHHH
Confidence 8887773 221 2222322 23445677888888888875 999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchhHHHHHcCCCchHHHhcCCchh
Q 004965 347 LYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSET 426 (721)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~~l~~~~ 426 (721)
|.++|+++..++|..+ +||++|++++.+++.+.. .++.+.+|++++.+-++|+.|+..++.+++|.++++++.+++
T Consensus 483 c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~--~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl~~~~~ 558 (930)
T KOG3682|consen 483 CCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQ--TEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDLIGYDI 558 (930)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhc--cchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHHhcccc
Confidence 9999999999999988 999999999999998765 456677999999999999999999999999999999999987
Q ss_pred HH-HHHHHHHHHHHhcC-ccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHhhhc-CCCHHHHHHH
Q 004965 427 NK-VMAMVIIQSIMKNN-TQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDTEEMFKI 503 (721)
Q Consensus 427 rk-~va~~Il~~~l~~~-~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~-~~d~e~q~~~ 503 (721)
++ +|+..|++.+.++. .+|+|+..++.|++.|++|++. .+... .+++-+....+||+|+.+++ |.|+|+|++|
T Consensus 559 ~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da-~~~~~---~ed~kR~~s~LI~~f~~mVdfg~~~eq~L~f 634 (930)
T KOG3682|consen 559 QSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDA-YRLEE---SEDVKRAASQLICSFLSMVDFGTNLEQCLEF 634 (930)
T ss_pred hhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHH-hhhhh---hhhhHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 76 99999999999864 5899999999999999999953 34432 23344788899999999999 9999999999
Q ss_pred HHHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhh----CCCCHHHHHHH
Q 004965 504 ICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLY----GVPAPELALRL 579 (721)
Q Consensus 504 l~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~----~~~~~~~~lkL 579 (721)
+++||..|++..+ .+..||.+.++||.++.+. -||...||+.|++.+. ++..|..+++|
T Consensus 635 ~vecRe~f~~~~~-----~li~LI~S~n~la~~t~K~------------gkK~a~Fvr~Cia~~~~TIPSv~~p~~rlnl 697 (930)
T KOG3682|consen 635 IVECREDFGLRQN-----SLIHLIESLNQLAHRTQKS------------GKKKADFVRVCIANLSLTIPSVRDPSRRLNL 697 (930)
T ss_pred HHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHhheecccccChhhHhhh
Confidence 9999999999987 8899999999999988621 1788999999999982 55689999999
Q ss_pred HHHHHHHhhhCCCccHHHHHHHHHHHhchhhc-cccH--HHHHHHHHHHHHHHhccCCCccc
Q 004965 580 YLQCAEAANDSDLEPVAYEFFTQAYILYEEEI-SDSR--AQVTAIHLIIGTLQRMHVFGVEN 638 (721)
Q Consensus 580 yLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i-~ds~--~q~~al~~ii~tL~~~~~~~~e~ 638 (721)
|||+|++|...|+-+.+.+|+..|++..+|-. .|.+ .-...+...|..+.++-.|-+||
T Consensus 698 yl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 698 YLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 99999999999999999999999999999764 5666 44566666677777766664443
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.1e-13 Score=153.81 Aligned_cols=197 Identities=7% Similarity=-0.173 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchhHHHHHHHhcchhHHHHHHHHHHHHH
Q 004965 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (721)
Q Consensus 36 l~~aLkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIlPRLYLmItVG~~y 115 (721)
.+.+++++..+..+.++.-+.|+.|++.|+...+|...|..++..+.-++..+.++|+.+++.+++.|+||..|+.+-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHH
Q 004965 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (721)
Q Consensus 116 i~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~--~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRl 193 (721)
.+.--........+...||+|++||++|.+.+++..++++.++|..+ +.|+. .++-.|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t-~~~e~~p------------------ 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYAT-SENEVLP------------------ 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHh-ccccCCc------------------
Confidence 99998888899999999999999999999999999999998888753 12210 0111111
Q ss_pred hccCCchhhhhHHHHHHHHHHHhhhchhhhhhhccCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCc
Q 004965 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPD 268 (721)
Q Consensus 194 QhqG~~rer~~r~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPD 268 (721)
+..+++|+++++.++.+++....|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 -----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~ 346 (760)
T KOG1107|consen 289 -----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG 346 (760)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC
Confidence 5667889999999999999999999999999999999999999999999999999999
No 5
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=1e+02 Score=37.22 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 004965 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP--DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVAL 395 (721)
Q Consensus 318 ~~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp--~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~l 395 (721)
+......|++.. .+-|+-..+..++|++-+...-...|. ++-.|+..+.+.+.+++.+.+...++..+.+++++
T Consensus 253 d~stlqlfFdly----~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRl 328 (1082)
T KOG1410|consen 253 DSSTLQLFFDLY----HSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRL 328 (1082)
T ss_pred CchHHHHHHHHh----ccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHH
Confidence 345556665544 444555567889999988888777775 46889999999999999998888888899999999
Q ss_pred HHchhhhchhHHHHHcCCCchHHHhc
Q 004965 396 LSAPLDKYNDIVTVLKLSNYPSVMEY 421 (721)
Q Consensus 396 L~~pl~~~~~~~~vl~l~~f~~Ll~~ 421 (721)
|-.-=.+|+ +-.+.+++.|++.+.+
T Consensus 329 laRlktNYQ-L~ELv~v~~Y~e~irL 353 (1082)
T KOG1410|consen 329 LARLKTNYQ-LGELVKVECYPEVIRL 353 (1082)
T ss_pred HHHHHhhhh-hHhhhccCCcHHHHHH
Confidence 998888895 6667899999988754
No 6
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=64.27 E-value=1e+02 Score=32.98 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=36.4
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 004965 333 IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (721)
Q Consensus 333 ~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (721)
+...|++++..|+.+.+++-..+..++-+=+.-||..|+ .... ..+..-+.+++++.
T Consensus 193 iA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk-------~Hp~-ls~~Er~~lC~~ld 249 (258)
T PF03000_consen 193 IAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLK-------AHPG-LSEEERKRLCRLLD 249 (258)
T ss_pred hcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHH-------Hccc-CCHHHHHHHHhhCC
Confidence 335689999999999999999887754433333444444 3322 24445556777654
No 7
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.78 E-value=4.9e+02 Score=32.93 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH---hccCCccccccccHHHHHHHHHHHHhc
Q 004965 481 EQNSVARLIQMLQNDDTEEMFKIICTVRKHI---LTGGPKRLPFTVPPLVFSSLKLVRQLQ 538 (721)
Q Consensus 481 eq~lv~r~ihli~~~d~e~q~~~l~~~r~~f---~~gg~~ri~~tlp~LV~~~~~L~~~~~ 538 (721)
.-..+.|-+|++.+.+.-.|+++|-.++--+ ..-.+ ++-|+|+.+|..+..+-
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n-----~LlPlvhq~W~~vie~~ 856 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHN-----LLLPLVHQTWPSVIECL 856 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccch-----hHhHHHHhhhhHHHHHH
Confidence 3456789999999999999988887776433 23333 77899999998877664
No 8
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=51.58 E-value=2.9e+02 Score=34.59 Aligned_cols=139 Identities=7% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchh-HHHHHcCCCchHHHhcCC--chh-HHHHHHHHHHHHHhcC
Q 004965 367 DQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYND-IVTVLKLSNYPSVMEYVD--SET-NKVMAMVIIQSIMKNN 442 (721)
Q Consensus 367 d~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~-~~~vl~l~~f~~Ll~~l~--~~~-rk~va~~Il~~~l~~~ 442 (721)
...+...+..+...+.........--..+|+..+++-++ +-..+-.--|+++....- .+. --+-+.+.+.+++...
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 444444444444433222222333444555555544432 334555666888765442 333 2478888999888642
Q ss_pred cc----ccCHHH--HHHHHHHHHHHHhcCCCCCC----------------CCCCh----------------hhHHHHHHH
Q 004965 443 TQ----ISTADK--VGALFELIKGLIRDLDGAAH----------------DQVDE----------------DDFKEEQNS 484 (721)
Q Consensus 443 ~~----i~~~~~--v~~ll~~~~~L~~d~~~~~~----------------~~~~~----------------~e~~~eq~l 484 (721)
.. -++..- +.-+|.+...|++...+... .+..+ +-..-+|++
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 10 011111 33556666666543322111 01111 223348999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHH
Q 004965 485 VARLIQMLQNDDTEEMFKIICT 506 (721)
Q Consensus 485 v~r~ihli~~~d~e~q~~~l~~ 506 (721)
|.-|.|++. .|+++-++||..
T Consensus 772 i~VfahL~~-t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 772 IMVFAHLVH-TDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHhh-CCHHHHHHHHHh
Confidence 999999996 578999999987
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=40.27 E-value=2.4e+02 Score=30.93 Aligned_cols=149 Identities=11% Similarity=0.194 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchhHHHHHcC--CCchH
Q 004965 341 ILGAVTLYSSLLTFTLHVHPDR-LDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKL--SNYPS 417 (721)
Q Consensus 341 ~~d~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l--~~f~~ 417 (721)
-.+++.++.++++=.-...++. ..-++.+++.+...+.+. ....|+....+-++|...+.++- ..++++ +.|..
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d-~~~yPe~r~~ff~LL~~i~~~~f--~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKD-FEEYPEHRVNFFKLLRAINEHCF--PALLQLPPEQFKL 165 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSST-SSSSHHHHHHHHHHHHHHHHHHT--HHHHHS-HHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-hhhChHHHHHHHHHHHHHHHHhH--HHHHcCCHHHHHH
Confidence 3445555555555444444433 333577777788877654 33578888899999999988873 556666 34777
Q ss_pred HHhcCCchhH---H---HHHHHHHHHHHhcCccccCHHHHHHHH-HHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHh
Q 004965 418 VMEYVDSETN---K---VMAMVIIQSIMKNNTQISTADKVGALF-ELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQ 490 (721)
Q Consensus 418 Ll~~l~~~~r---k---~va~~Il~~~l~~~~~i~~~~~v~~ll-~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ih 490 (721)
+++.+-|..+ + +.+..++..++++-.. .+++..+.++ .+.-.++++-=...++..-...|.....++++++.
T Consensus 166 ~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 166 VIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 7766665443 2 3344444444432111 4455444433 12222221100000000112356666667777776
Q ss_pred hhc
Q 004965 491 MLQ 493 (721)
Q Consensus 491 li~ 493 (721)
++.
T Consensus 245 ~ve 247 (319)
T PF08767_consen 245 LVE 247 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 10
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=36.48 E-value=34 Score=35.40 Aligned_cols=72 Identities=26% Similarity=0.456 Sum_probs=52.0
Q ss_pred HHHHHHhhhHHHHHHHHHHhhc----C--CCchhHHHHHHHhcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 004965 63 LYMRAFDELRKLEMFFKEETRR----G--CSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (721)
Q Consensus 63 LYm~V~d~L~~L~~yl~~~~~~----g--~~l~dLYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRG 136 (721)
++...+++|+.|.+||...+.+ | -.++|+ +++||||-+=+++.-|.- -+.|. + -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~-~~IP~-~--------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKN-FEIPA-S--------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcC-CCCch-h--------hhH
Confidence 4578889999999999975432 3 367898 999999999999988863 34453 1 356
Q ss_pred ccchhHHHHHHHHHHh
Q 004965 137 IQHPVRGLFLRSYLSQ 152 (721)
Q Consensus 137 VQhPlRGLFLR~YL~q 152 (721)
|-.=+.++|.|-=+-+
T Consensus 186 V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHHHHHhHHHhhc
Confidence 7666777777754444
No 11
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.25 E-value=64 Score=36.93 Aligned_cols=29 Identities=38% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhccc
Q 004965 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRD 156 (721)
Q Consensus 127 LkDLvEMcRGVQhPlRGLFLR~YL~q~~k~ 156 (721)
+.+|.. .+|=|.|=|+||+|.||+|-...
T Consensus 249 l~Rl~~-lKg~~spEraL~lRL~LLQGV~~ 277 (568)
T KOG2561|consen 249 LSRLRS-LKGGQSPERALILRLELLQGVVA 277 (568)
T ss_pred hHhhhh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 555554 78999999999999999996543
No 12
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=32.92 E-value=3.3e+02 Score=23.76 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 004965 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (721)
Q Consensus 319 ~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (721)
..++ ...++..++++ .+++|+|++.+..+.+. ..+|+-.+.+..-|.+..+.+..
T Consensus 18 ~~L~-~~~~~~r~~i~--~~I~PEeIv~iH~~~v~---~l~~~~~~~v~~sld~LlEvm~~ 72 (77)
T PF08673_consen 18 QSLY-QAQEFGRELIE--KDISPEEIVEIHKSAVQ---ELSPSLPEDVLDSLDFLLEVMIG 72 (77)
T ss_dssp HHHH-HHHHHHHHHHH--TT--HHHHHHHHHHHHH---HH-TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH--cCCCHHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHHHHH
Confidence 4566 77888888888 48999999999998876 56666566777777777666543
No 13
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=31.77 E-value=4.7e+02 Score=27.27 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=54.7
Q ss_pred HHhHhHhhCCchhhHHhHHHHHhhcc--ccCCC--CCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHH
Q 004965 258 LMDCIIQVFPDEYHLQTLEILLGAFP--QLQPS--VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVI 333 (721)
Q Consensus 258 Lmd~IiQvFPDefHl~TL~~lL~~~~--~l~~~--V~v~~Il~~L~~RL~~~~~~~~~~i~~~~~~~lf~~f~~~i~~l~ 333 (721)
++..+.+.||+.|+ +||+++. ....+ +++...+...|++|-.-.. +...
T Consensus 105 ~~~~v~~~y~~k~~-----~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~-------------------~~~s--- 157 (219)
T PF14677_consen 105 ILSTVCQRYPDKFS-----QFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELE-------------------NFLS--- 157 (219)
T ss_dssp HHHHHHHTSGGGHH-----HHHHHTS----STTTT-HHHHHHHHHHHHHHHHHH-------------------HHHH---
T ss_pred HHHHHHHHhhHHHH-----HHHHHhccccCCccccccHHHHHHHHHHHHHHHHh-------------------hccc---
Confidence 34567789999886 5999764 22222 4555555555555532111 1111
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 004965 334 EAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (721)
Q Consensus 334 ~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (721)
....+....+++.++..+-.|+-..-|+.... +.++.-+.+.+++.. ..++...+.|+++|
T Consensus 158 ~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~-~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 158 SEEEDFNSKEAVLLVNILSQLSDHLDPSSDQF-TQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp S--SS--SHHHHHHHHHHHHHTTSS-SSSSHH-HHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 11122335556666666666666666654433 467777777776653 22343445555554
No 14
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=27.89 E-value=95 Score=26.29 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 004965 324 KLNNAIGKVIEAQ-ADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 371 (721)
Q Consensus 324 ~f~~~i~~l~~~~-~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~ 371 (721)
.|++.+.+.++.+ +.+++.+.+.+.-|+.- +.+||.+ ++++||.
T Consensus 20 ~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~--l~~~p~~--~l~~vf~ 64 (71)
T PF06743_consen 20 EFFEKLIERLESYLDEFSPEDLLDLVWSLCL--LQRFPED--LLNKVFS 64 (71)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--HhhCCHH--HHHHHcC
Confidence 3455555555555 78899999999988865 6789965 8888875
No 15
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.15 E-value=2.2e+03 Score=31.70 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=62.3
Q ss_pred HhHhHhhCCchhhHHh---HHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhh
Q 004965 259 MDCIIQVFPDEYHLQT---LEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEA 335 (721)
Q Consensus 259 md~IiQvFPDefHl~T---L~~lL~~~~~l~~~V~v~~Il~~L~~RL~~~~~~~~~~i~~~~~~~lf~~f~~~i~~l~~~ 335 (721)
+.+++-+-|-++-... +.-+++.|.+- ...++...++.++.|+-+-.....+.. +-....++..|++.+.++.+.
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~-e~~~~~v~~~i~~~l~s~~~~ 2035 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESL-ELLYQVVSKLIDELLTSVTTV 2035 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhH-HHHhhHHHHHHHhhhhheecc
Confidence 5555555566554443 44556666543 455666666666666643222111100 011356788889888888874
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 004965 336 QADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKL 377 (721)
Q Consensus 336 ~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l 377 (721)
. ..-...+.+.+-+.-.+..++.+|+|.++....+-+
T Consensus 2036 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~ 2072 (3550)
T KOG0889|consen 2036 P-----LQLASNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCF 2072 (3550)
T ss_pred c-----ccchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 222222223455555667778889998887655543
No 16
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.64 E-value=7.9e+02 Score=25.73 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchhHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhc-Ccccc
Q 004965 368 QVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKN-NTQIS 446 (721)
Q Consensus 368 ~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~~l~~~~rk~va~~Il~~~l~~-~~~i~ 446 (721)
.+++.|++.+...+- ..+...+++.+|..-+.+++ .+.=.+++..+++.+-.. .....
T Consensus 7 ~v~~~~l~~l~~~~l--~~k~~~dii~~L~~El~~lp-------------------~~~Lv~l~~~~v~~i~~g~~~~~~ 65 (223)
T PF14675_consen 7 KVYKCCLKLLESGDL--SEKQASDIIGRLMLELHSLP-------------------GEHLVELAELCVDSIRSGDNKNGK 65 (223)
T ss_dssp HHHHHHHHHHHHS-----HHHHHHHHHHHHHHGGG---------------------HHHHHHHHHHHHHHHHS---S-ST
T ss_pred HHHHHHHHHcccCCc--CHHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHHHHcCCcccch
Confidence 456666666655322 33444455555554444442 333456777777766421 12233
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHH-----------HHHHHHHHhhhc--CCCHHHHHHHHHHHHHHHhc
Q 004965 447 TADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEE-----------QNSVARLIQMLQ--NDDTEEMFKIICTVRKHILT 513 (721)
Q Consensus 447 ~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~e-----------q~lv~r~ihli~--~~d~e~q~~~l~~~r~~f~~ 513 (721)
..+-+=.+|..++.- +......++...+|+... .+.+..++.+++ .=+.+..-.+....-+.+.+
T Consensus 66 ~ldLlP~~Ls~L~~~--~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~ 143 (223)
T PF14675_consen 66 WLDLLPKCLSALSAS--ESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVPLSKEELEFVVEKVLSMLKK 143 (223)
T ss_dssp TTTHHHHHHHHHHT---S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--cccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 333333333332222 111111112333444311 122334555555 34667777777788888888
Q ss_pred cCCccccccccHHHHHHHHHHHH
Q 004965 514 GGPKRLPFTVPPLVFSSLKLVRQ 536 (721)
Q Consensus 514 gg~~ri~~tlp~LV~~~~~L~~~ 536 (721)
.++. -+||||++.+.|+.+
T Consensus 144 l~l~----elPpLvyQLL~Lssk 162 (223)
T PF14675_consen 144 LDLQ----ELPPLVYQLLLLSSK 162 (223)
T ss_dssp S-GG----GHHHHHHHHHHHHTT
T ss_pred CChh----hccHHHHHHHHHhhc
Confidence 8764 689999999999854
No 17
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=25.61 E-value=67 Score=24.54 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.6
Q ss_pred HhHhHhhCCchhhHHhHHHHHhhcc
Q 004965 259 MDCIIQVFPDEYHLQTLEILLGAFP 283 (721)
Q Consensus 259 md~IiQvFPDefHl~TL~~lL~~~~ 283 (721)
+|.+..+||. -...+|+.+|++|.
T Consensus 5 idiL~rvFP~-~kr~~Le~iL~~C~ 28 (39)
T PF03474_consen 5 IDILTRVFPH-QKRSVLELILQRCN 28 (39)
T ss_pred HHHHHHHCCC-CChHHHHHHHHHcC
Confidence 4788999998 66789999999995
No 18
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.92 E-value=7e+02 Score=30.60 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCChhh--HHHHHHHHHHHHHHhcCCCchhHHH
Q 004965 316 FLQVEAFSKLNNAIGKVIEAQADMPILG--AVTLYSSLLTFTLHVHPDRLDYADQ 368 (721)
Q Consensus 316 ~~~~~lf~~f~~~i~~l~~~~~~l~~~d--~i~l~~sll~l~l~~yp~~~~~vd~ 368 (721)
+-|..+|++|.-.++-+.+.. ++.++| -..++...+++++.|-. +||+..
T Consensus 178 FRD~sL~~vf~laln~L~~~~-~~nlnd~~q~~L~~~vL~L~l~Cl~--FDfiGs 229 (1082)
T KOG1410|consen 178 FRDDSLFDVFSLALNLLKDNV-DLNLNDRAQLGLLMQVLKLNLNCLN--FDFIGS 229 (1082)
T ss_pred hhhhHHHHHHHHHHHHHHHhc-ccCcccHhHhhHHHHHHHHHhhhcc--cccccc
Confidence 445679999988888777654 444443 57888999999999865 456543
No 19
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=24.57 E-value=4.2e+02 Score=24.01 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=44.6
Q ss_pred chhhhhhhccCCHHHHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhH
Q 004965 219 NLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHL 272 (721)
Q Consensus 219 nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl 272 (721)
.+..+.--+|-+++.|-..+-- |..++-.|+.++.-+.+...|+..+|.+|+-
T Consensus 31 ~l~~~k~~~~~sv~~y~~~~~~-i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~ 83 (119)
T PF14223_consen 31 QLENLKMKDGESVDEYISRLKE-IVDELRAIGKPISDEDLVSKILRSLPPSYDT 83 (119)
T ss_pred HHHHHHhcccccHHHHHHHHHH-hhhhhhhcCCcccchhHHHHHHhcCCchhHH
Confidence 3444554578899999998775 7799999999999999999999999999964
No 20
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=1.6e+02 Score=28.93 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhc-CCCCCchhhHHHHHH----HhhhHHHHHHHHHH
Q 004965 37 RDALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (721)
Q Consensus 37 ~~aLkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~~~ 81 (721)
|.-+.---.+|.+||. ..+.|..|-+||+++ |...++|-.|+.+.
T Consensus 96 i~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 96 IKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 3444444567888875 789999999999997 88889999998874
No 21
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.65 E-value=1.3e+03 Score=26.65 Aligned_cols=90 Identities=8% Similarity=0.095 Sum_probs=49.3
Q ss_pred CccccCHHHHHHHHHHHHHHHhcC--CCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH-hccCCcc
Q 004965 442 NTQISTADKVGALFELIKGLIRDL--DGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHI-LTGGPKR 518 (721)
Q Consensus 442 ~~~i~~~~~v~~ll~~~~~L~~d~--~~~~~~~~~~~e~~~eq~lv~r~ihli~~~d~e~q~~~l~~~r~~f-~~gg~~r 518 (721)
.....++..+.+-..+++-++-.. .+.| .-.+ ..+.++..|...+..+++-.-++++..++..+ ++.+..-
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~-----~l~~-~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l 337 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYP-----SLPF-SPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGREL 337 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcc-----eecc-cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhh
Confidence 444666666755566665555433 1111 1111 12356777777777777677778888888777 5555322
Q ss_pred ccccccHHHHHHHHHHHHh
Q 004965 519 LPFTVPPLVFSSLKLVRQL 537 (721)
Q Consensus 519 i~~tlp~LV~~~~~L~~~~ 537 (721)
.......++..+.++...+
T Consensus 338 ~~~~W~~~~~i~~~~~~~~ 356 (464)
T PF11864_consen 338 SEEDWDIILDIIEEIFDKI 356 (464)
T ss_pred cccCchHHHHHHHHHHhhc
Confidence 3444554444444443333
Done!