Query 004965
Match_columns 721
No_of_seqs 135 out of 229
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 100.0 1.4E-77 4.7E-82 631.0 16.8 236 477-721 1-244 (298)
2 3ro3_A PINS homolog, G-protein 79.9 22 0.00076 30.2 11.9 135 555-697 27-161 (164)
3 3ro3_A PINS homolog, G-protein 67.0 57 0.002 27.5 11.7 121 572-700 4-124 (164)
4 3gw4_A Uncharacterized protein 52.1 1.3E+02 0.0045 26.9 15.3 138 555-700 44-182 (203)
5 3u3w_A Transcriptional activat 46.6 2.2E+02 0.0075 27.9 18.3 137 555-700 133-272 (293)
6 4ap2_B Cullin-3, CUL-3; ubiqui 43.5 3.4E+02 0.012 29.1 17.6 29 230-258 197-225 (410)
7 4a1s_A PINS, partner of inscut 42.3 2.8E+02 0.0097 27.9 15.7 138 555-700 241-378 (411)
8 3ulq_A Response regulator aspa 36.0 3.6E+02 0.012 27.2 21.3 185 492-700 114-299 (383)
9 1qqe_A Vesicular transport pro 33.4 3.5E+02 0.012 26.4 12.7 113 573-696 33-149 (292)
10 2ifu_A Gamma-SNAP; membrane fu 31.6 3.9E+02 0.013 26.3 14.5 37 572-608 31-67 (307)
11 1bl1_A Parathyroid hormone rec 30.0 13 0.00045 25.8 0.4 15 100-114 15-29 (31)
12 4hat_C Exportin-1; heat repeat 25.0 9.7E+02 0.033 28.9 17.7 38 555-592 823-862 (1023)
13 3ut4_A CTHE_2751, putative unc 24.0 1.8E+02 0.0063 26.7 7.1 47 233-281 57-103 (134)
14 4a1s_A PINS, partner of inscut 22.9 5.8E+02 0.02 25.5 18.5 138 555-700 201-338 (411)
15 2j6y_A Phosphoserine phosphata 20.6 2.8E+02 0.0095 24.8 7.2 56 320-380 25-80 (111)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-77 Score=630.96 Aligned_cols=236 Identities=45% Similarity=0.739 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHH
Q 004965 477 DFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKV 556 (721)
Q Consensus 477 e~~~eq~lv~r~ihli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~ 556 (721)
||.+||++|||+||+++++|||+||++|..+|+||++||++|++||+|||||++|+|+|+++..+..++.|+ ..++|+
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~--~~~~ki 78 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWE--KKCQKI 78 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHH--HHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999987654333332 235899
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCC---ccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccC
Q 004965 557 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDL---EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHV 633 (721)
Q Consensus 557 f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~---~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~ 633 (721)
|+|||+||+.|...+.|+++||||||||++||++|+ +++|||||+|||+||||+|+|||+|++||.+|||||+++|+
T Consensus 79 f~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~ 158 (298)
T 2r17_C 79 FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKC 158 (298)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccC
Confidence 999999999996446799999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 004965 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVD-----DQDNMKDGERVLLCLKRALRIANAAQQMSNATRGS 708 (721)
Q Consensus 634 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~-----~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~ 708 (721)
|++||||+|+||||+||||||||||||||||+||||||++ +.+++||||||+|||||||||||+||| +
T Consensus 159 f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d-------~ 231 (298)
T 2r17_C 159 FSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------P 231 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-------H
T ss_pred CCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-------h
Confidence 9999999999999999999999999999999999999984 234689999999999999999999999 8
Q ss_pred CCchhhHHhhccC
Q 004965 709 TGSVTLFVEILNK 721 (721)
Q Consensus 709 ~~~~~LfveiLn~ 721 (721)
.++++|||||||+
T Consensus 232 ~~~v~LfveILn~ 244 (298)
T 2r17_C 232 SLQVQLFIEILNR 244 (298)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999995
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=79.89 E-value=22 Score=30.24 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCC
Q 004965 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (721)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~ 634 (721)
+-.++....+........+......+..-|.+....|.-+-|.++|.+|+.++++. .+......+...+.........+
T Consensus 27 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444442223455556677777888777888888889999999999754 45554455555444444333221
Q ss_pred CccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 004965 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANA 697 (721)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~ 697 (721)
+.-.....++...+.+.-..+..+.+...-+.+++.. .+.+...+++++|++++.+
T Consensus 106 --~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 106 --EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-----GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHH
Confidence 1122222333333333333455566666667666633 3578899999999999864
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=67.00 E-value=57 Score=27.50 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 004965 572 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSA 651 (721)
Q Consensus 572 ~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~as 651 (721)
++......+..-|.+.-..|.-+-|-+.|.+|+.++++ ..+......+...+.........+ +.-.....++...+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLAR 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 45555666777777777777777788889999999885 445555445555544444443222 111222333333333
Q ss_pred hccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 652 KLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 652 kLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
+.-..+.+..+.+.-+..++.. .+-+...++++++++++...-+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLL-----QDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCcHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHccc
Confidence 3333344566666666666633 4578899999999999876533
No 4
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=52.13 E-value=1.3e+02 Score=26.85 Aligned_cols=138 Identities=10% Similarity=-0.042 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccH-HHHHHHHHHHHHHHhccC
Q 004965 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSR-AQVTAIHLIIGTLQRMHV 633 (721)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~-~q~~al~~ii~tL~~~~~ 633 (721)
+-..+..+.+........+......+..-|.+....|-.+-|.++|.+|+.+++ ...|.. ....+...+.........
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCC
Confidence 445566666665544445666667777778888888888888899999999998 555443 444455544444444322
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 634 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
+ +.-.....++...+.+.=.....+.+...-+.+++.. .+.....+++++|++++...-+
T Consensus 123 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 123 L--AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-----KNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHcCC
Confidence 2 1122222333333333333344556666667777643 3578899999999999988665
No 5
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=46.64 E-value=2.2e+02 Score=27.85 Aligned_cols=137 Identities=10% Similarity=-0.033 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCC
Q 004965 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (721)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~ 634 (721)
+-.++....+...............|..-|.+-...|--+-|.++|.+|+.++++.-.+......++..+..++....
T Consensus 133 ~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-- 210 (293)
T 3u3w_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-- 210 (293)
T ss_dssp HHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--
Confidence 445555555542222223344556677777777777877888899999999887643455555556666555554533
Q ss_pred CccchHH---HHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 635 GVENRDT---LTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 635 ~~e~y~~---L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
+|+. ...++-..+.+.=..+....+.+.-+..++... ++-+..++++++|+.+++..-+
T Consensus 211 ---~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 211 ---RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE----YEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCC
Confidence 3332 112222222222222344666666676666331 1237899999999999996544
No 6
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=43.45 E-value=3.4e+02 Score=29.14 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=20.8
Q ss_pred CHHHHhhhcchHHHHHHHhccchhhhhHH
Q 004965 230 DLDTYKETVLPRVLEQVVNCKDEIAQCYL 258 (721)
Q Consensus 230 ~~~~Y~~~iLP~iLeqIv~c~D~~AQeYL 258 (721)
+.+.|.+.+-|.+|+....-=-.-||+|+
T Consensus 197 ~~~vY~~~FE~~fL~~T~~fY~~es~~~l 225 (410)
T 4ap2_B 197 GRSVYEEDFEAPFLEMSAEFFQMESQKFL 225 (410)
T ss_dssp SSHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999877655444555554
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=42.29 E-value=2.8e+02 Score=27.91 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCC
Q 004965 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (721)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~ 634 (721)
+-.++...++...............+..-|.+.-..|..+-|.+.|.+|+.+.++. .+......++..+...+.....+
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 44455555554443222344455566667777777788788888999999998854 45555555555555555443332
Q ss_pred CccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
+.-.....++...+.+.-..+...++.+.-+.+++.. .+.+..++++++|++++.+.-+
T Consensus 320 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 320 --NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-----GGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhhccc
Confidence 2222333344444444444555666777777777743 4678999999999999988766
No 8
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=35.97 E-value=3.6e+02 Score=27.24 Aligned_cols=185 Identities=11% Similarity=-0.003 Sum_probs=110.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCC
Q 004965 492 LQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVP 571 (721)
Q Consensus 492 i~~~d~e~q~~~l~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~ 571 (721)
....+.+.-+..+..+-+.+.+.+. -|........++.-+..... ..+-.++....+.......
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKD------RIEKAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCC------HHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTCS
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCc
Confidence 3455677666666666655544432 22234444555555432211 1355666666666654433
Q ss_pred C-HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Q 004965 572 A-PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYS 650 (721)
Q Consensus 572 ~-~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~a 650 (721)
. .......+..-|.+-...|.-+-|-+.|.+|+.++++. .|......+...+.........+ +.-...-.++...+
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~--~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQY--EDAIPYFKRAIAVF 254 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHH
Confidence 2 44445666666777777788888889999999999855 55555555555544443333221 11222223333333
Q ss_pred HhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 651 AKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 651 skLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
.+.-.+|....+...-+..++.. .+-+...+++++|++++...-+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKL-----GKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccchhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHcCC
Confidence 34444588888888888888844 4678999999999999876543
No 9
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.41 E-value=3.5e+02 Score=26.43 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHh
Q 004965 573 PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAK 652 (721)
Q Consensus 573 ~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ask 652 (721)
.+.+...|-++|.+-...|--+-|-+.|.+|+.++++ ..|......++..+...+..... |+. +..+-..|.+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g~-----~~~-A~~~~~~Al~ 105 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGGN-----SVN-AVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC-----HHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHCCC-----HHH-HHHHHHHHHH
Confidence 6778889999988887788878888999999999874 44544444555554444433322 221 1122222222
Q ss_pred ccCch----hhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 004965 653 LLKKP----DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIAN 696 (721)
Q Consensus 653 LLkK~----dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~ 696 (721)
+..+. ....+...-+.++... ..+...-++|+++|+++..
T Consensus 106 l~~~~g~~~~~a~~~~~lg~~~~~~----lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 106 IFTHRGQFRRGANFKFELGEILEND----LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHH
Confidence 22211 1233333444444421 1357788888888888764
No 10
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=31.61 E-value=3.9e+02 Score=26.35 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhch
Q 004965 572 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYE 608 (721)
Q Consensus 572 ~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyE 608 (721)
..+.+..+|-++|.+-...|.-+-|-+.|.+|..+++
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~ 67 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHA 67 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455555565555555555555555556666666655
No 11
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=30.02 E-value=13 Score=25.82 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHH
Q 004965 100 NILPRLYLLCTVGSV 114 (721)
Q Consensus 100 nIlPRLYLmItVG~~ 114 (721)
.+-+|||+|=|||=+
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 467899999999943
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=25.02 E-value=9.7e+02 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHhhhCCC
Q 004965 555 KVFQLLNQTIETLYG--VPAPELALRLYLQCAEAANDSDL 592 (721)
Q Consensus 555 k~f~fv~~~i~~l~~--~~~~~~~lkLyLq~A~vAd~~~~ 592 (721)
..|+++++++..+.. ...|...++++++|+..|-....
T Consensus 823 ~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~ 862 (1023)
T 4hat_C 823 EFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNN 862 (1023)
T ss_dssp HHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 445555554444310 02456677777777777755443
No 13
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=24.02 E-value=1.8e+02 Score=26.75 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHhhhcchHHHHHHHhccchhhhhHHHhHhHhhCCchhhHHhHHHHHhh
Q 004965 233 TYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGA 281 (721)
Q Consensus 233 ~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~ 281 (721)
.|.+.+.|.| ++|.+++|.+=..|++++++.-+|.+- ...|.+=|..
T Consensus 57 ~~~~~l~p~I-~~vl~s~D~~W~ywil~~lv~~~~~~~-~~~l~~eL~r 103 (134)
T 3ut4_A 57 LHQSIAMPHI-LTILQGNDIMWKYWVIKLMIPYLIYPN-KQLVKSELER 103 (134)
T ss_dssp HTHHHHHHHH-HHHHHSSCHHHHHHHHHHHGGGCCHHH-HHHHHHHHHH
T ss_pred HccHhhHHHH-HHHHHcCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 4677888988 668999999999999999999999864 3444333333
No 14
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=22.88 E-value=5.8e+02 Score=25.48 Aligned_cols=138 Identities=11% Similarity=0.072 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCC
Q 004965 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (721)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~ 634 (721)
+-.++....+...............+..-|.+.-..|--+-|.+.|.+|+.++++ ..+......+...+...+.....+
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCH
Confidence 3344444444433222334555567777777777778878888999999999986 345555455555555555443222
Q ss_pred CccchHHHHHHHHHHHHhccCchhhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 004965 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (721)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (721)
+.-.....++...+.+.-.......+...-+.+++.. .+-+.-.++++++++++...-+
T Consensus 280 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 280 --EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-----HEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHCCC
Confidence 1122222333333333333345566777777777743 4678899999999999887643
No 15
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=20.56 E-value=2.8e+02 Score=24.77 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC
Q 004965 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGE 380 (721)
Q Consensus 320 ~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~ 380 (721)
.......++-.++++ .+++|+|++++..+.+. ..||+-.+.|-..|....+.+.+.
T Consensus 25 ~~Ly~aq~fsr~lie--k~I~PEeiV~iHk~~i~---~l~~~l~e~v~~s~d~L~Evm~gy 80 (111)
T 2j6y_A 25 TSLYQAQKFSRKTIE--HQIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIGY 80 (111)
T ss_dssp HHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHH
Confidence 455566777888888 48999999999998876 679986666766777777766553
Done!