Query 004965
Match_columns 721
No_of_seqs 135 out of 229
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 11:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004965.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004965hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 43.6 1.1E+02 0.0077 28.0 12.6 113 574-697 34-150 (290)
2 d1w53a_ a.186.1.2 (A:) Phospho 34.5 1E+02 0.0073 24.3 8.9 55 319-379 25-79 (84)
3 d2bpta1 a.118.1.1 (A:1-861) Im 20.9 4E+02 0.029 26.7 14.6 178 220-405 622-815 (861)
4 d1ldda_ a.4.5.34 (A:) Anaphase 19.7 53 0.0039 25.4 4.2 31 322-352 6-36 (74)
5 d1hf8a1 a.7.8.2 (A:150-281) Cl 19.2 2.4E+02 0.018 23.5 9.7 54 318-376 55-108 (132)
6 d1hx8a1 a.7.8.2 (A:167-299) AP 17.3 2.5E+02 0.018 23.4 8.7 54 318-376 52-105 (133)
7 d1w9ca_ a.118.1.19 (A:) Export 16.3 2.8E+02 0.02 26.5 10.0 78 342-422 92-172 (321)
8 d1pfva1 a.27.1.1 (A:389-550) M 12.1 2.8E+02 0.021 23.1 7.9 64 295-358 1-66 (162)
9 d1qqea_ a.118.8.1 (A:) Vesicul 11.7 4.6E+02 0.034 23.1 15.0 140 475-631 30-171 (290)
10 d1d5ya2 a.4.1.8 (A:57-121) Rob 11.6 58 0.0042 23.9 2.4 22 584-607 18-39 (65)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.57 E-value=1.1e+02 Score=27.99 Aligned_cols=113 Identities=10% Similarity=0.010 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhc
Q 004965 574 ELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL 653 (721)
Q Consensus 574 ~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL 653 (721)
+.+..+|.++|.+=-.++--+-|-++|.+|..+++.. .+...-..++..+.....++.. |+. +..+-..|.++
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~-~~~~~~a~~~~~~g~~y~~~~~-----~~~-A~~~~~~a~~~ 106 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKCFKSGGN-----SVN-AVDSLENAIQI 106 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC-----HHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCC-----cHH-HHHHHHHhhHH
Confidence 6788999999988777776666778999999999854 3333223444444333333322 221 23333333333
Q ss_pred cCch----hhhHHHHHhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 004965 654 LKKP----DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANA 697 (721)
Q Consensus 654 LkK~----dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~ 697 (721)
..+. .++.+...-+.++-. ...|....++++++|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 107 FTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHh
Confidence 3333 233433333433321 234678899999999988543
No 2
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=34.55 E-value=1e+02 Score=24.25 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 004965 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (721)
Q Consensus 319 ~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (721)
..++ ...++-.++++. +++|+|++++..+.++ ..+|+..+.+..-|....+.+..
T Consensus 25 ~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~g 79 (84)
T d1w53a_ 25 TSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHH
Confidence 3455 778888888884 8999999999999887 77888777877777777766543
No 3
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.86 E-value=4e+02 Score=26.72 Aligned_cols=178 Identities=11% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhhhhhhccCCHHHHhhhcchHHHHHHHhccchhhhhHH--HhHhHhhCCch---hhHHhHHHHHhhccccCCCCCHHHH
Q 004965 220 LHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYL--MDCIIQVFPDE---YHLQTLEILLGAFPQLQPSVDIKTV 294 (721)
Q Consensus 220 LvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYL--md~IiQvFPDe---fHl~TL~~lL~~~~~l~~~V~v~~I 294 (721)
+..+...-|-+..-|-..++|.+++-+-+......+.-+ +..|+...+++ |--..++.+++.+..-+...+++..
T Consensus 622 l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~ 701 (861)
T d2bpta1 622 ISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCch----------
Q 004965 295 LSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLD---------- 364 (721)
Q Consensus 295 l~~L~~RL~~~~~~~~~~i~~~~~~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~---------- 364 (721)
+.+.+..++..+... -.+.++.+...+.+..+...+-...+.......+.+-++..|+.-+.
T Consensus 702 ~~~~l~~i~~~~~~~--------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 773 (861)
T d2bpta1 702 VLSVFGDIASNIGAD--------FIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp HHHHHHHHHHHHGGG--------GHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q ss_pred -hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchh
Q 004965 365 -YADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYND 405 (721)
Q Consensus 365 -~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~ 405 (721)
|++.+++.+...+.+......+........++..-...|++
T Consensus 774 p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 815 (861)
T d2bpta1 774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcc
No 4
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.70 E-value=53 Score=25.36 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 004965 322 FSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (721)
Q Consensus 322 f~~f~~~i~~l~~~~~~l~~~d~i~l~~sll 352 (721)
..+||.+|..+....+.+|++.+-.++..++
T Consensus 6 lq~~w~yI~gMLtN~~slpleRIh~mLkmfv 36 (74)
T d1ldda_ 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKITV 36 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 5689999999998888999999888876554
No 5
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.24 E-value=2.4e+02 Score=23.49 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004965 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKK 376 (721)
Q Consensus 318 ~~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~ 376 (721)
...+|..+.+-+..+++...+|+-.|-..-+..+-+++.+ .+.|...++.|-+.
T Consensus 55 s~~lY~~inegiinLLd~fFem~k~da~~al~iykr~~~q-----~e~L~~f~~~ck~~ 108 (132)
T d1hf8a1 55 AIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTR-----MTRISEFLKVAEQV 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHc
Confidence 4678888899999999999999999998888888888876 78899999988764
No 6
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.27 E-value=2.5e+02 Score=23.40 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004965 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKK 376 (721)
Q Consensus 318 ~~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~ 376 (721)
...+|..+.+-+..+++..-+|+-.|-..-++.+-+++.+ .+.|...++.|-+.
T Consensus 52 s~~lY~~inegiinLLd~fFem~k~da~~al~iyk~~~~q-----~e~L~~f~~~ck~~ 105 (133)
T d1hx8a1 52 LIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVR-----MDRVGEFLKVAENV 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHc
Confidence 4678888899999999998899999988888888888876 78899999988663
No 7
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.35 E-value=2.8e+02 Score=26.53 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhchhHHHHHcCC--CchHH
Q 004965 342 LGAVTLYSSLLTFTLHVHPDR-LDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLS--NYPSV 418 (721)
Q Consensus 342 ~d~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~--~f~~L 418 (721)
.+++.++.++++=.-...++. ..-.+.|++.+.+.+++. ....|+....+-++|...+.++- ..+++++ .|..+
T Consensus 92 ~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~d-f~~yPehR~~ff~LL~~i~~~cf--~~ll~lp~~qf~~v 168 (321)
T d1w9ca_ 92 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKD-FEEYPEHRTNFFLLLQAVNSHCF--PAFLAIPPTQFKLV 168 (321)
T ss_dssp THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSST-TTCSHHHHHHHHHHHHHHHHHCT--THHHHSCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-chhChHHHHHHHHHHHHHHHHCH--HHHHcCCHHHHHHH
Confidence 355555555555433333333 233467777777777654 33578888899999998888773 4555553 24455
Q ss_pred HhcC
Q 004965 419 MEYV 422 (721)
Q Consensus 419 l~~l 422 (721)
++.+
T Consensus 169 idsi 172 (321)
T d1w9ca_ 169 LDSI 172 (321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 8
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=12.11 E-value=2.8e+02 Score=23.15 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhccCC-Cch-hhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHh
Q 004965 295 LSRLMERLSNYAASSTEV-LPE-FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHV 358 (721)
Q Consensus 295 l~~L~~RL~~~~~~~~~~-i~~-~~~~~lf~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~ 358 (721)
+.+|+.|-.+|+...-+| +|. ..+.++.+.+.+.+.++.+.-....+.+.+...-++++.+-++
T Consensus 1 ~~NL~~R~~~~i~k~~~g~vp~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nky 66 (162)
T d1pfva1 1 VVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRY 66 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 368899999999765333 443 1245677777777777666555667777777776666655443
No 9
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.74 E-value=4.6e+02 Score=23.10 Aligned_cols=140 Identities=8% Similarity=-0.005 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCCh
Q 004965 475 EDDFKEEQNSVARLIQMLQ-NDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTP 553 (721)
Q Consensus 475 ~~e~~~eq~lv~r~ihli~-~~d~e~q~~~l~~~r~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~ 553 (721)
+..+.+.-+.-.+.-++.. ..+.++-.+.+..+-....+.+. -|.....+..++.-+..... .
T Consensus 30 ~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~------~~~~a~~~~~~g~~y~~~~~----------~ 93 (290)
T d1qqea_ 30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN------EDEAGNTYVEAYKCFKSGGN----------S 93 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTC----------H
T ss_pred cccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHhCC----------c
Confidence 3345444444444455555 55777778888877776666653 34555666666665542211 2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHh-hhCCCccHHHHHHHHHHHhchhhccccHHHHHHHHHHHHHHHhc
Q 004965 554 KKVFQLLNQTIETLYGVPAPELALRLYLQCAEAA-NDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRM 631 (721)
Q Consensus 554 kk~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~vA-d~~~~~~iayeFf~qAf~iyEe~i~ds~~q~~al~~ii~tL~~~ 631 (721)
.+-.+....++........+..+...+...|.+- .+.|-.+-|.+++.+|..++++. .+......++..+...+.+.
T Consensus 94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~~~~~ 171 (290)
T d1qqea_ 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADLKALD 171 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHHHHc
Confidence 3455666666666644456677777777777665 44577777889999999998853 33333344445444444443
No 10
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.59 E-value=58 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHhhhCCCccHHHHHHHHHHHhc
Q 004965 584 AEAANDSDLEPVAYEFFTQAYILY 607 (721)
Q Consensus 584 A~vAd~~~~~~iayeFf~qAf~iy 607 (721)
.++|..+|+.+.++ |+.+|.=+
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~~ 39 (65)
T d1d5ya2 18 LDIALQYRFDSQQT--FTRAFKKQ 39 (65)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHHH
Confidence 47899999999987 88887644
Done!