Query 004967
Match_columns 721
No_of_seqs 234 out of 560
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 2E-196 4E-201 1557.3 50.5 675 1-721 50-734 (734)
2 PTZ00487 ceramidase; Provision 100.0 3E-185 6E-190 1575.6 69.3 650 1-721 58-715 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 4E-186 8E-191 1595.3 54.1 652 1-721 20-674 (674)
4 COG3356 Predicted membrane pro 97.4 0.0012 2.6E-08 75.5 12.1 117 1-131 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.3 0.0022 4.8E-08 64.3 11.6 117 2-130 43-162 (179)
6 PF01835 A2M_N: MG2 domain; I 94.8 0.3 6.5E-06 43.6 10.1 77 611-700 8-86 (99)
7 PF10633 NPCBM_assoc: NPCBM-as 65.4 21 0.00045 30.5 6.2 71 615-698 2-74 (78)
8 PTZ00397 macrophage migration 53.9 32 0.0007 31.7 5.9 50 23-75 49-103 (116)
9 PF01282 Ribosomal_S24e: Ribos 49.7 38 0.00081 30.1 5.3 38 41-80 8-45 (84)
10 TIGR03769 P_ac_wall_RPT actino 42.2 21 0.00045 27.5 2.1 24 681-707 6-29 (41)
11 PF10342 GPI-anchored: Ser-Thr 39.4 2.5E+02 0.0054 24.1 10.2 83 611-720 6-93 (93)
12 PF14552 Tautomerase_2: Tautom 34.8 48 0.001 29.2 3.6 46 30-77 26-76 (82)
13 COG3657 Uncharacterized protei 33.5 21 0.00045 32.5 1.1 27 288-333 36-62 (100)
14 PF01960 ArgJ: ArgJ family; I 32.2 1.6E+02 0.0034 33.5 7.9 46 18-73 54-101 (388)
15 PRK10301 hypothetical protein; 30.6 3.6E+02 0.0078 25.5 9.0 7 618-624 46-52 (124)
16 PTZ00450 macrophage migration 30.4 1.1E+02 0.0025 28.5 5.5 50 23-75 49-103 (113)
17 COG1470 Predicted membrane pro 28.0 85 0.0018 36.3 4.9 43 660-702 426-470 (513)
18 PF12103 Lipl32: Surface lipop 27.9 1.1E+02 0.0024 30.7 5.0 83 617-701 63-159 (182)
19 PF15418 DUF4625: Domain of un 27.1 1.3E+02 0.0028 28.9 5.4 39 657-698 74-114 (132)
20 KOG3006 Transthyretin and rela 25.7 1.5E+02 0.0033 28.3 5.3 19 681-699 67-86 (132)
21 cd08544 Reeler Reeler, the N-t 24.6 3E+02 0.0065 25.9 7.4 80 612-699 28-118 (135)
22 PF00868 Transglut_N: Transglu 23.3 3.7E+02 0.008 25.2 7.6 67 616-697 48-114 (118)
23 PF09580 Spore_YhcN_YlaJ: Spor 23.3 1.7E+02 0.0037 28.8 5.7 46 19-73 92-141 (177)
24 TIGR03196 pucD xanthine dehydr 23.1 3.6E+02 0.0079 33.3 9.5 98 30-130 476-574 (768)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-196 Score=1557.32 Aligned_cols=675 Identities=75% Similarity=1.219 Sum_probs=655.0
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 004967 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (721)
Q Consensus 1 m~GYa~~~q~a~Gvhd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP~ 80 (721)
||||++.+|.+.|||.||+|||||++++.++|++||++|.+|+.+.++.+|.+||+++||++|.++||.||+||||+||+
T Consensus 50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg 129 (734)
T KOG2232|consen 50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG 129 (734)
T ss_pred eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence 89999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeccccccCCchhccCCChhhcccCCCCCCCe
Q 004967 81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE 160 (721)
Q Consensus 81 g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~NP~~er~~y~g~vD~~ 160 (721)
||++|.+|.++++||+++.|+.++++|.++|.+||+||+|++|.+++|++.++++|||+.+|++||.+||++|+.++|++
T Consensus 130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe 209 (734)
T KOG2232|consen 130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE 209 (734)
T ss_pred ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCeEE---EEEeeeccccccC---CCCcccc---CCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcc
Q 004967 161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR 231 (721)
Q Consensus 161 l~vL~f~~~dG~~ia---~L~~yA~HpTsl~---~~N~lIS---~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~ 231 (721)
|++|||+|..+.++| +..||++|+++|+ +.|+++| +|+.||++++||++.+.
T Consensus 210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~------------------- 270 (734)
T KOG2232|consen 210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNP------------------- 270 (734)
T ss_pred eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCc-------------------
Confidence 999999999899999 5999999999999 8899999 99999999999997532
Q ss_pred ccccccccccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEEeccccCCCCCCCCCCccccCCCCC
Q 004967 232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC 311 (721)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~c~d~g~~c 311 (721)
.+.+||.+++.++++|++| ...++.||+||||+|+||||||++|++|.|||+||
T Consensus 271 ----------------------~~~pG~~v~~~~~~~~rvr----~~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C 324 (734)
T KOG2232|consen 271 ----------------------NSMPGKSVTRSSSVARRVR----NADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC 324 (734)
T ss_pred ----------------------ccCCCcccccchhhhhhhh----cccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence 3567999999999999997 57788999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccccceeEEEEEeeceeeeecCCCCCCCccc
Q 004967 312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV 391 (721)
Q Consensus 312 ~~~~s~c~g~~~~~~~~GP~~~d~~e~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~ 391 (721)
||++|||+|++++|+++||+++||||+++|||+|||+.|++||++++++++|+|+++|+||||++++|.++...+..+.+
T Consensus 325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v 404 (734)
T KOG2232|consen 325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV 404 (734)
T ss_pred ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887888999
Q ss_pred cccccccchhhhhccCCCCCCccccCCCCCCChhHHHHhhhhcCCChhhhcccCCcceeecCCCCCCCCCCCCCceeeeE
Q 004967 392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQI 471 (721)
Q Consensus 392 ~tc~~a~G~sfaagt~dgpg~~~f~qg~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~v~iqi 471 (721)
+||||||||||||||+||||+|+|+||++.+||||+++|++++.|++|+++||.||||||+||+|++||+|.|.||++||
T Consensus 405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi 484 (734)
T KOG2232|consen 405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI 484 (734)
T ss_pred ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCEEEEecCCchhhHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCccccCChhhhccCceeeeeeccCCCcHH
Q 004967 472 LQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLS 551 (721)
Q Consensus 472 lriG~l~iv~~PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~G~aN~y~~YitT~eeY~~q~YEg~sT~yGp~tl~ 551 (721)
||||+|+|++||||||||+|||||++|++.+.+.+. ..+.+|+|+||+|.|++||+|+|||++||||||||+||||||.
T Consensus 485 lriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~-~~~~~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGpHtlS 563 (734)
T KOG2232|consen 485 LRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGN-SINMHVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGPHTLS 563 (734)
T ss_pred eeeccEEEEecCccceehhhHHHHHHHHHHHHhcCC-CcceEEEEeccccchhhhcccHHHHhHHHhhccccccCcchhh
Confidence 999999999999999999999999999999987654 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccCCcccCCCCCCCCCcceeecCCCCCcccCCCeEEEEEEcccCCC
Q 004967 552 AYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRN 631 (721)
Q Consensus 552 ay~q~~~~La~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~~~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~~~Prn 631 (721)
+|||+|++|+++|..+..+++||+|||+.++|+++++||++|..|.|..||||+.|++.++.|+.|+.|+|+|++|||||
T Consensus 564 ~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~D~tP~g~~FGdV~s~vp~k~~~r~g~~v~v~f~sanPrN 643 (734)
T KOG2232|consen 564 AYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVVDGTPIGTDFGDVKSDVPNKSYFRRGTQVKVTFRSANPRN 643 (734)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceeeccCccCCccccccCCCCCchhhccccEEEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999766788999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCc-eEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEeccccccCCCcee
Q 004967 632 DLMTEGTFALVEILHGKDI-WAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRH 710 (721)
Q Consensus 632 ~l~~~~tf~~Ver~~~~~~-W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~ 710 (721)
||++|+||++|||+.+++. |++|+||+||+|||+|+|++.|++.|++||+|+||+.+.||.|||||||.+|.++|.|.+
T Consensus 644 dl~Te~Tf~~VEr~~~~~~tW~~vydD~~~~~rf~W~r~~kl~~~S~atieW~Ipeta~pGvYRIrhfG~~k~ilg~i~~ 723 (734)
T KOG2232|consen 644 DLMTEGTFATVERLEEGDKTWKPVYDDDDWELRFKWSRPNKLSGFSQATIEWRIPETASPGVYRIRHFGAAKKILGSIHS 723 (734)
T ss_pred ccccccceeeehhhhccCceeeeeecCccceeEEEeccCccccccccceEEEecCCcCCCceEEEEeccccccccccccc
Confidence 9999999999999987766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccceEEC
Q 004967 711 FTGSSSAFVVA 721 (721)
Q Consensus 711 ~~g~s~~F~v~ 721 (721)
|+|+|+.|+|.
T Consensus 724 f~Gss~aF~V~ 734 (734)
T KOG2232|consen 724 FEGSSSAFVVV 734 (734)
T ss_pred cccCccceEeC
Confidence 99999999985
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=2.9e-185 Score=1575.56 Aligned_cols=650 Identities=48% Similarity=0.865 Sum_probs=617.3
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhC-CCCCCCcEEEEeeccCCCC
Q 004967 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG-DLYTEKNVAISGIHTHAGP 79 (721)
Q Consensus 1 m~GYa~~~q~a~Gvhd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G-~~i~~~nVlIsATHTHSgP 79 (721)
||||+.+.|+++|||||||||||||+|.+++|++||++|+++++++++++|+++|+++|| ++|+.+||+|++|||||||
T Consensus 58 m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGP 137 (715)
T PTZ00487 58 MMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGP 137 (715)
T ss_pred ccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCC
Confidence 899999999999999999999999965458999999999999999999999999999999 6779999999999999999
Q ss_pred CcCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeccccccCCchhccCCChhhcccCCCCCCC
Q 004967 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (721)
Q Consensus 80 ~g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~NP~~er~~y~g~vD~ 159 (721)
++|.++.+|+++.+||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||++||.+|++++|+
T Consensus 138 gg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~ 217 (715)
T PTZ00487 138 AGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDK 217 (715)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 004967 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (721)
Q Consensus 160 ~l~vL~f~~~dG~~ia~L~~yA~HpTsl~~~N~lIS~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+|+||+|++.||+++|+|+|||||||+|+++|++||+||||+++++||+.+++. . ..|
T Consensus 218 ~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~---------------~-----~~p-- 275 (715)
T PTZ00487 218 NMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGN---------------D-----SFP-- 275 (715)
T ss_pred ceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccC---------------c-----cCC--
Confidence 999999999999999999999999999999999999999999999999987541 0 011
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEEeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 004967 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~c~d~g~~c~~~~s~c~ 319 (721)
+.++|||||+|||+||||||++|++|+| |++||+++|||+
T Consensus 276 ---------------------------------------g~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~ 315 (715)
T PTZ00487 276 ---------------------------------------GVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCN 315 (715)
T ss_pred ---------------------------------------CCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccC
Confidence 2246999999999999999999999999 999999999999
Q ss_pred CCCcccccCCCCCC-CchhhHHHHHHHHHHHHHHHHhhccccccccceeEEEEEeeceeeeecCCCCCCCcccccccccc
Q 004967 320 GKNEMCYGRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAM 398 (721)
Q Consensus 320 g~~~~~~~~GP~~~-d~~e~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~~tc~~a~ 398 (721)
|+.++|+|+||++. |||+++++||+||+++|++||+++.++|+|+|+++|+|+||++++|..+.+ +++..++||||||
T Consensus 316 g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~-~~~~~~~tC~aa~ 394 (715)
T PTZ00487 316 GTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYN-SGVQVATTCRGAM 394 (715)
T ss_pred CcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccC-CCCCcceeccccc
Confidence 99999999999987 799999999999999999999988899999999999999999999975543 4557899999999
Q ss_pred chhhhhccCCCCCCccccCCCCC--CChhHHHHhhhhcCCChhhhcccCCcceeecCCCCCCCCCCCCCceeeeEEEECC
Q 004967 399 GFAFAAGTTDGPGAFDFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQ 476 (721)
Q Consensus 399 G~sfaagt~dgpg~~~f~qg~~~--~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~v~iqilriG~ 476 (721)
|+||||||+||||.|+|+||++. +||||+.+++++.+|++++++||+||||||++| +..||+|+|++|||||+|||+
T Consensus 395 G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi~riG~ 473 (715)
T PTZ00487 395 GYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQIMTIGQ 473 (715)
T ss_pred CcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEEEEEee
Confidence 99999999999999999999876 689999999999999999999999999999999 678999999999999999999
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCccccCChhhhccCceeeeeeccCCCcHHHHHHH
Q 004967 477 LVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQE 556 (721)
Q Consensus 477 l~iv~~PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~G~aN~y~~YitT~eeY~~q~YEg~sT~yGp~tl~ay~q~ 556 (721)
|+|+++|||+|||+|||||++|++++.. +. ++++|+|+||||+|+|||||+|||+.|||||+|||||||||+||+|+
T Consensus 474 l~i~~~P~E~TtmaGrRlr~aV~~~~~~-~~--~~~~Vvl~G~aN~Y~~YvtT~EEY~~QrYEGaSTlyGp~TL~ay~q~ 550 (715)
T PTZ00487 474 IVLVAVPGEFTTMSGRRLRNTVREIIGT-SI--ENPIVLIAGLSNTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQE 550 (715)
T ss_pred EEEEecCcccchhHHHHHHHHHHHHhhc-CC--CCceEEEEecccccccccCCHHHhhhhhhccccceeCchHHHHHHHH
Confidence 9999999999999999999999998864 22 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccccccCCcccCCCCCCCCCcceeecCCCCCc--ccCCCeEEEEEEcccCCCCCC
Q 004967 557 FKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTT--FRRGEMVTVSFWSACPRNDLM 634 (721)
Q Consensus 557 ~~~La~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~~~g~~fGdv~~~~~~~~~--y~~g~~v~~~F~~~~Prn~l~ 634 (721)
+.+||++|++|.++++||.|||+++++++|++||++|++|+|++||||++|| .++ |++|++|+|+|++||||||||
T Consensus 551 ~~~la~al~~~~~~~~Gp~Pp~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~--~~~~~y~~g~~v~~~F~~a~Prn~l~ 628 (715)
T PTZ00487 551 FDKLAQSIVDGQPISPGLKPRNLYGHTWFFLPPVIVDSAPFFDDFGDLYQDV--DTEKVYSNNDTVSAEFYGGNPRNNFM 628 (715)
T ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCcccccCCcccCCCCCCCccCcEeccC--CcccccCCCCEEEEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999 456 999999999999999999999
Q ss_pred CCCCeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEeccccc--cCCCceeeE
Q 004967 635 TEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKS--LLGSTRHFT 712 (721)
Q Consensus 635 ~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~--~~g~~~~~~ 712 (721)
+++||++|||+.+++.|++|+||+||+|+|+|+|. +++.|++||+|+||+++++|+|||+|||+||+ +.|+|+||+
T Consensus 629 ~~~tf~~Ve~~~~~~~W~~v~~D~dw~t~~~W~r~--~~~~S~~ti~W~i~~~~~~G~YRi~~~G~~k~~~~~g~i~~f~ 706 (715)
T PTZ00487 629 TESSFLTVDKLNEKNQWTTILVDGDWDTKWHWKMH--DLGFSLITIIWSIGPTTEPGTYRITHSGYAKKNPFSQNLTPYQ 706 (715)
T ss_pred cCcceEEEEEecCCCceeEeccCCCcceEEEEecc--CCCceeEEEEEECCCCCCCeeeEEEEeecccccccCCCceeeE
Confidence 99999999999877889999999999999999998 36899999999999999999999999999998 789999999
Q ss_pred EeccceEEC
Q 004967 713 GSSSAFVVA 721 (721)
Q Consensus 713 g~s~~F~v~ 721 (721)
|+|++|+|.
T Consensus 707 G~s~~F~v~ 715 (715)
T PTZ00487 707 GISSNFKVQ 715 (715)
T ss_pred EecCceEeC
Confidence 999999985
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3.5e-186 Score=1595.32 Aligned_cols=652 Identities=60% Similarity=0.985 Sum_probs=461.8
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCC
Q 004967 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (721)
Q Consensus 1 m~GYa~~~q~a~Gvhd~L~ARAlvl~d~-~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP 79 (721)
||||+++.|+++|||||||||||||++. +++|+|||++|++++++.++++|+++|++++|.+|+++||+|++|||||||
T Consensus 20 m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgP 99 (674)
T PF04734_consen 20 MMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGP 99 (674)
T ss_dssp EESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE
T ss_pred cCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCC
Confidence 8999999999999999999999999942 579999999999999999999999999999998889999999999999999
Q ss_pred CcCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeccccccCCchhccCCChhhcccCCCCCCC
Q 004967 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (721)
Q Consensus 80 ~g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~NP~~er~~y~g~vD~ 159 (721)
+||.++.+++++..||+++|+++|+++|++||++|+++|+|++|.++++++.++++|||+.+|+.||++||.+|++++||
T Consensus 100 gg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~ 179 (674)
T PF04734_consen 100 GGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDP 179 (674)
T ss_dssp ----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---
T ss_pred CccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 004967 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (721)
Q Consensus 160 ~l~vL~f~~~dG~~ia~L~~yA~HpTsl~~~N~lIS~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (721)
+|+||+|++.||+++|+|+|||||||+|+++|++||+|||||++++||++++..
T Consensus 180 ~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~~-------------------------- 233 (674)
T PF04734_consen 180 EMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGGD-------------------------- 233 (674)
T ss_dssp EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT-----------------------------
T ss_pred ceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhccc--------------------------
Confidence 999999999999999999999999999999999999999999999999987521
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEEeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 004967 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (721)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~c~d~g~~c~~~~s~c~ 319 (721)
..++++|||||+|+|+||||||+.|++|+|+|++||+++|||+
T Consensus 234 -------------------------------------~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 276 (674)
T PF04734_consen 234 -------------------------------------LAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCG 276 (674)
T ss_dssp ----------------------------------------STT-EEEEE-SS-TTEES-SS-------------------
T ss_pred -------------------------------------ccCCCCeEEEEccCCcccccccccccccccccccccccccccc
Confidence 0245899999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccccceeEEEEEeeceeeeecCCCCCCCccccccccccc
Q 004967 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (721)
Q Consensus 320 g~~~~~~~~GP~~~d~~e~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~~tc~~a~G 399 (721)
|+.++|+++||++ |||++++|||+||+++|++||+++.++|+|+|+++|+||||++++|..+.+ +++..++||+||||
T Consensus 277 ~~~~~~~~~Gp~~-d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~~~~-~~~~~~~tc~~a~G 354 (674)
T PF04734_consen 277 GKNELCHGRGPGK-DMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDPPFT-GDGKTVRTCPAAMG 354 (674)
T ss_dssp ----SSSTSSSTS--HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGGT--TSS-EE-----EE
T ss_pred ccccccCCCCCCc-cchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEccCCC-CCCCcCcccccccc
Confidence 9999999999998 999999999999999999999988999999999999999999999986654 56688999999999
Q ss_pred hhhhhccCCCCCCccccCCCC--CCChhHHHHhhhhcCCChhhhcccCCcceeecCCCCCCCCCCCCCceeeeEEEECCE
Q 004967 400 FAFAAGTTDGPGAFDFTQGDD--KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQL 477 (721)
Q Consensus 400 ~sfaagt~dgpg~~~f~qg~~--~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~v~iqilriG~l 477 (721)
+||||||+||||.|+|+||++ .+||||+.+++++.+|++++.+||+||||||++|++++||+|+|++|||||+|||+|
T Consensus 355 ~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG~l 434 (674)
T PF04734_consen 355 YSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIGQL 434 (674)
T ss_dssp ----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEETTE
T ss_pred cccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEcCE
Confidence 999999999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCccccCChhhhccCceeeeeeccCCCcHHHHHHHH
Q 004967 478 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEF 557 (721)
Q Consensus 478 ~iv~~PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~G~aN~y~~YitT~eeY~~q~YEg~sT~yGp~tl~ay~q~~ 557 (721)
+|+++|||||||+|||||++|++++...+. .+++|+|+||||+|+|||||+|||+.|+|||+||+||||||+||+|++
T Consensus 435 ~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~--~~~~vvi~g~sN~Y~~YvtT~EEY~~Q~YEg~sTl~Gp~tl~a~~q~~ 512 (674)
T PF04734_consen 435 VIVAVPGEFTTMAGRRLREAVAEALGAAGI--DDPHVVIAGLSNGYSHYVTTPEEYQVQRYEGASTLYGPHTLAAYIQEF 512 (674)
T ss_dssp EEEE-SSEE-HHHHHHHHHHHHHHHGGGT------EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHHHHHHHHH
T ss_pred EEEEcCCcchhHHHHHHHHHHHHHHhhcCC--CceEEEEEeeccCcccccCCHHHhhcCcccccceeeCHhHHHHHHHHH
Confidence 999999999999999999999999987654 257999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccccccCCcccCCCCCCCCCcceeecCCCCCcccCCCeEEEEEEcccCCCCCCCCC
Q 004967 558 KKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEG 637 (721)
Q Consensus 558 ~~La~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~~~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~~~Prn~l~~~~ 637 (721)
.+|+++|++|+++++||+|+|++++++++++||++|++|+|++||||+.|| +++|++|++|+|+||+||||||||+++
T Consensus 513 ~~la~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~--~~~y~~g~~v~~~F~~a~Prn~l~~~~ 590 (674)
T PF04734_consen 513 ARLARALADGEPVPPGPSPPDLSSKQISLPPGVVFDAPPLGKSFGDVLQQP--NPSYRPGDTVSATFVGANPRNNLRLEG 590 (674)
T ss_dssp HHHHHHHHHT------------GGG--B-S--------STT--TT-EEE-----SEEETT-EEEEEEEE--GGG---TTS
T ss_pred HHHHHHHhhcccCCCCCCCcccccccccccccCCCCCCCCCCCcCceEeCC--cCccCCCCeEEEEEeeeCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999998 679999999999999999999999999
Q ss_pred CeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEeccccccCCCceeeEEeccc
Q 004967 638 TFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSA 717 (721)
Q Consensus 638 tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~~~g~s~~ 717 (721)
|||+|||+++++.|++|+||+||+|+|+|+|.+.+++.|++||+|+||++++||+|||+|||++|++.|+|+||+|+|++
T Consensus 591 tfl~Ver~~~~~~W~~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~i~~f~G~S~~ 670 (674)
T PF04734_consen 591 TFLTVERLESGGSWQTVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPPGTYRIRHFGDAKSLFGGITPFEGTSRE 670 (674)
T ss_dssp -SEEEEEEES-S--EEEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--SEEEEEEEEEEEE-TTT-EEEEEEE---
T ss_pred CeEEEEEecCCCCeEEEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCCCCEEEEEEeeccCCCCCeEeEEEECCc
Confidence 99999999878999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred eEEC
Q 004967 718 FVVA 721 (721)
Q Consensus 718 F~v~ 721 (721)
|+|+
T Consensus 671 F~V~ 674 (674)
T PF04734_consen 671 FTVT 674 (674)
T ss_dssp EEE-
T ss_pred eEeC
Confidence 9995
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.41 E-value=0.0012 Score=75.51 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=91.6
Q ss_pred CCcccCCC---CccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 004967 1 MMGYANME---QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (721)
Q Consensus 1 m~GYa~~~---q~a~Gvhd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHS 77 (721)
++||+... +...|+ -+..+||++++. +++|.++|.+|.=-+..++.++|++++.+ + .+++.+..|-||.
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~-g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~ 484 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDT-GDTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHY 484 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEec-CCeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCce
Confidence 57898732 344454 478999999999 69999999999999999999999988887 3 6799999999998
Q ss_pred CCC-cCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEec
Q 004967 78 GPG-GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (721)
Q Consensus 78 gP~-g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~ 131 (721)
--+ ....+. ..|. .+-.+.|.+.++.++++|.++++|+++++.+.++.
T Consensus 485 vn~~~~~~~~-----pvg~-r~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 485 VNGRLVLGYN-----PVGS-REDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred eccccccccc-----cccc-cccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 654 222111 1222 23456899999999999999999999998888774
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.31 E-value=0.0022 Score=64.32 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=86.7
Q ss_pred CcccCCCCccceeec---ceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCC
Q 004967 2 MGYANMEQIASGIHF---RLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (721)
Q Consensus 2 ~GYa~~~q~a~Gvhd---~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSg 78 (721)
.||+... +.-|-|+ +.-.+|++++. ++++.++|.+|---+.+.+.++|++++.+. .+.+.|..|.||+-
T Consensus 43 ~G~~~~~-~~~~~~~~lg~~gi~~~~v~~-~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~ 114 (179)
T PF09843_consen 43 VGYAEAE-PFLGEHEGLGIGGISALVVEV-GGQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFV 114 (179)
T ss_pred cceEecc-CCCCCCCCcCccccEEEEEEe-CCcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEE
Confidence 4666432 2334443 45689999999 699999999999999999999999888773 56899999999996
Q ss_pred CCcCcccccccccccccchhHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEe
Q 004967 79 PGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGEL 130 (721)
Q Consensus 79 P~g~~~~~l~~i~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~ 130 (721)
-+-.... .|..-..-. -.+.+.+.+.+++.+|.++++|+++++.+..+
T Consensus 115 ~~~~~g~-~y~~vG~~~---~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~ 162 (179)
T PF09843_consen 115 NGESGGN-GYWPVGPLI---PPREIIESRREAVSEAERDLEPVEVGYKEVYV 162 (179)
T ss_pred ccEECCc-cceeccccC---CHHHHHHHHHHHHHHHHhcccccEEEEEEEEE
Confidence 5521111 111101001 35678888999999999999999999999886
No 6
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.75 E-value=0.3 Score=43.58 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=43.2
Q ss_pred CCcccCCCeEEEEEEcccCCCC-CCCCCCeEEEEEEeCCCceEEeecCCCcceEEEEec-CCCCCceeEEEEEEEcCCCC
Q 004967 611 NTTFRRGEMVTVSFWSACPRND-LMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSR-PSKLSARSMATIEWRIPDTA 688 (721)
Q Consensus 611 ~~~y~~g~~v~~~F~~~~Prn~-l~~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r-~~~~~~~s~~ti~W~ip~~~ 688 (721)
++.|+|||+|.+..+.-+..|+ ......-+.|+-....| ...++|.. ... ....+..+|.+|.+.
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g-----------~~v~~~~~~~~~--~~G~~~~~~~lp~~~ 74 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSG-----------NEVFRWSVNTTN--ENGIFSGSFQLPDDA 74 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTS-----------EEEEEEEEEETT--CTTEEEEEEE--SS-
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEECCCC-----------CEEEEEEeeeeC--CCCEEEEEEECCCCC
Confidence 5689999999988774444432 12223334444333222 22445554 221 345778899999999
Q ss_pred CCcceEEEEecc
Q 004967 689 PLGVYRIRHFGA 700 (721)
Q Consensus 689 ~~G~YRi~~~G~ 700 (721)
+.|+|+|+...+
T Consensus 75 ~~G~y~i~~~~~ 86 (99)
T PF01835_consen 75 PLGTYTIRVKTD 86 (99)
T ss_dssp --EEEEEEEEET
T ss_pred CCEeEEEEEEEc
Confidence 999999999875
No 7
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=65.35 E-value=21 Score=30.54 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=29.9
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEE--cCCCCCCcc
Q 004967 615 RRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWR--IPDTAPLGV 692 (721)
Q Consensus 615 ~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~--ip~~~~~G~ 692 (721)
.+|+++++++.=-|.-+.- ... +.+.- ..-..|. +..+.. .+. .|-....++++|. +|.++++|+
T Consensus 2 ~~G~~~~~~~tv~N~g~~~-~~~--v~~~l-~~P~GW~-~~~~~~---~~~-----~l~pG~s~~~~~~V~vp~~a~~G~ 68 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAP-LTN--VSLSL-SLPEGWT-VSASPA---SVP-----SLPPGESVTVTFTVTVPADAAPGT 68 (78)
T ss_dssp -TTEEEEEEEEEE--SSS--BSS---EEEE-E--TTSE----EEE---EE-------B-TTSEEEEEEEEEE-TT--SEE
T ss_pred CCCCEEEEEEEEEECCCCc-eee--EEEEE-eCCCCcc-ccCCcc---ccc-----cCCCCCEEEEEEEEECCCCCCCce
Confidence 4688777666554443221 111 34332 2234587 322221 111 1222334566665 588999999
Q ss_pred eEEEEe
Q 004967 693 YRIRHF 698 (721)
Q Consensus 693 YRi~~~ 698 (721)
|+|...
T Consensus 69 y~v~~~ 74 (78)
T PF10633_consen 69 YTVTVT 74 (78)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999863
No 8
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=53.90 E-value=32 Score=31.74 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=38.5
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 004967 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (721)
Q Consensus 23 lvl~d~~~~rvv~Vs~Dl~~i-~~----~v~~~Vr~~L~~~~G~~i~~~nVlIsATHT 75 (721)
|++.. ....+++|.+.+++. .. .+..+|.+.|++.+| +++++|+|.-+=.
T Consensus 49 m~f~g-~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 49 MRFGG-SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred EEECC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 44444 467999999997664 32 567788888899999 9999999987544
No 9
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=49.73 E-value=38 Score=30.06 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 004967 41 CMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (721)
Q Consensus 41 ~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP~ 80 (721)
.+-+.--+.+|+++|++.++ .+.++|+|-.-+||-|=+
T Consensus 8 ~g~~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 8 PGKPTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SSSSS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 33345568899999999999 899999999999999876
No 10
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=42.22 E-value=21 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.6
Q ss_pred EEEcCCCCCCcceEEEEeccccccCCC
Q 004967 681 EWRIPDTAPLGVYRIRHFGAAKSLLGS 707 (721)
Q Consensus 681 ~W~ip~~~~~G~YRi~~~G~~k~~~g~ 707 (721)
.|-- +.||+|+|...-.++...|+
T Consensus 6 nW~F---T~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 6 NWVF---TKPGTYTLTVQATATLTDGK 29 (41)
T ss_pred ceee---CCCeEEEEEEEEEEEeCCCc
Confidence 5655 67999999999988777776
No 11
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=39.39 E-value=2.5e+02 Score=24.14 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=47.7
Q ss_pred CCcccCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCC----ceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCC
Q 004967 611 NTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKD----IWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPD 686 (721)
Q Consensus 611 ~~~y~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~----~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~ 686 (721)
+..+..|+.+++++-..+ ++ ..-++|.-..++. .+.+++++-+ .+.=+++|.+|.
T Consensus 6 ~~~~~~g~~~~I~W~~~~--~~----~~~~~I~L~~g~~~~~~~~~~ia~~v~---------------~~~gs~~~~~p~ 64 (93)
T PF10342_consen 6 GTVWTAGQPITITWTSDG--TD----PGNVTIYLCNGNNTNLNFVQTIASNVS---------------NSDGSYTWTIPS 64 (93)
T ss_pred CCEEECCCcEEEEEeCCC--CC----CcEEEEEEEcCCCCCcceeEEEEeccc---------------CCCCEEEEEcCC
Confidence 456778999999887753 11 1445665443222 2444433221 122346899988
Q ss_pred CCCC-cceEEEEeccccccCCCceeeEEeccceEE
Q 004967 687 TAPL-GVYRIRHFGAAKSLLGSTRHFTGSSSAFVV 720 (721)
Q Consensus 687 ~~~~-G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v 720 (721)
+.++ +.|+|+.. +...- .....|..|+|
T Consensus 65 ~l~~~~~Y~i~~~-~~~~~-----~~~~~S~~FtI 93 (93)
T PF10342_consen 65 DLPSGGDYFIQIV-NSSNN-----TIYAYSPRFTI 93 (93)
T ss_pred CCCCCCcEEEEEE-ECCCC-----ceEEECccEEC
Confidence 7665 89999998 43221 23456677765
No 12
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=34.85 E-value=48 Score=29.22 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred CCEEEEEEeccC-ccc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 004967 30 GNRVVFVNLDAC-MAS----QIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (721)
Q Consensus 30 ~~rvv~Vs~Dl~-~i~----~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHS 77 (721)
...+++|.+.+. +=. +.+...+.++|++++| |++++|+|+-+-++.
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~~ 76 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENPR 76 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-G
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECCc
Confidence 567788888877 222 3566688888888899 999999999887763
No 13
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.49 E-value=21 Score=32.52 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=21.3
Q ss_pred eccccCCCCCCCCCCccccCCCCCCCCCCcCCCCCcccccCCCCCC
Q 004967 288 CQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYP 333 (721)
Q Consensus 288 ~qg~~GDvSPn~~g~~c~d~g~~c~~~~s~c~g~~~~~~~~GP~~~ 333 (721)
++||.||+.|--. |-.||++-.||+++
T Consensus 36 ~~GN~GD~kpvge-------------------GV~ELRId~GpGyR 62 (100)
T COG3657 36 ALGNFGDVKPVGE-------------------GVSELRIDHGPGYR 62 (100)
T ss_pred hcCCCcCcccccc-------------------chhhheeccCCceE
Confidence 5889999999422 56788999999873
No 14
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=32.16 E-value=1.6e+02 Score=33.50 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred eEEEEEEEEeCCCCEEEEEEeccCcccHH--HHHHHHHHHHHHhCCCCCCCcEEEEee
Q 004967 18 LRARTFIVAEPQGNRVVFVNLDACMASQI--VKIKVIERLKARYGDLYTEKNVAISGI 73 (721)
Q Consensus 18 L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~--v~~~Vr~~L~~~~G~~i~~~nVlIsAT 73 (721)
=.+||+|+.++ ..-.|-..+. -..++.+.+++.+| +++++|++++|
T Consensus 54 ~~~ravvvNSG--------nANA~TG~~G~~da~~~~~~~A~~l~--~~~~~VlvaST 101 (388)
T PF01960_consen 54 GRIRAVVVNSG--------NANACTGEQGLEDAEAMAEAVAEALG--IPPEEVLVAST 101 (388)
T ss_dssp SBEEEEEEEES--------E---S-HHHHHHHHHHHHHHHHHHHT--CHGGGEEEEEE
T ss_pred CceEEEEEccC--------CCCCCCcHHHHHHHHHHHHHHHHHhC--CCcccEEEecc
Confidence 35788888885 4445544544 45588899999999 99999999999
No 15
>PRK10301 hypothetical protein; Provisional
Probab=30.56 E-value=3.6e+02 Score=25.55 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=5.6
Q ss_pred CeEEEEE
Q 004967 618 EMVTVSF 624 (721)
Q Consensus 618 ~~v~~~F 624 (721)
+.|+.+|
T Consensus 46 ~~V~L~F 52 (124)
T PRK10301 46 QALTLNF 52 (124)
T ss_pred CEEEEEc
Confidence 6788888
No 16
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=30.35 E-value=1.1e+02 Score=28.48 Aligned_cols=50 Identities=8% Similarity=0.162 Sum_probs=39.2
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 004967 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (721)
Q Consensus 23 lvl~d~~~~rvv~Vs~Dl~~i-~~----~v~~~Vr~~L~~~~G~~i~~~nVlIsATHT 75 (721)
+.+.. ..+..++|.+=.++. .. .+...+-+.|.+++| |+.++|.|.-.-.
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d~ 103 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYST 103 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEcH
Confidence 44444 467999999998885 32 567788888999999 9999999988753
No 17
>COG1470 Predicted membrane protein [Function unknown]
Probab=28.01 E-value=85 Score=36.34 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=31.1
Q ss_pred cceEEEEecCCCC--CceeEEEEEEEcCCCCCCcceEEEEecccc
Q 004967 660 FCLRFKWSRPSKL--SARSMATIEWRIPDTAPLGVYRIRHFGAAK 702 (721)
Q Consensus 660 w~t~~~W~r~~~~--~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k 702 (721)
|++++.=..-..+ -..-.|.++=++|.++.+|.|||...+.+-
T Consensus 426 Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 426 WEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred ceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 6666554432221 135578888899999999999999998776
No 18
>PF12103 Lipl32: Surface lipoprotein of Spirochaetales order; InterPro: IPR021962 Lipl32 is an outer membrane surface lipoprotein of Leptospira like bacteria. ; PDB: 2ZZ8_A 2WFK_D 3FRL_B.
Probab=27.92 E-value=1.1e+02 Score=30.67 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=48.2
Q ss_pred CCeEEEEEEcccCCCCCCCCCCeEEEEEEeC-----------CCceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcC
Q 004967 617 GEMVTVSFWSACPRNDLMTEGTFALVEILHG-----------KDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIP 685 (721)
Q Consensus 617 g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~-----------~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip 685 (721)
|+-|+-.|-.+-+.+--..=.||+++||+.. .-.|+++.+|+|=+-...=.+.+ .-.|-.++.=+|+
T Consensus 63 ~dfvs~~f~~~~~~~~~~~FDT~I~leR~~ii~~~~I~~~aK~~~~~~L~~nDD~~e~p~~p~g~--~YNSLlR~~s~i~ 140 (182)
T PF12103_consen 63 GDFVSSAFKAAAQSDKSKYFDTWIRLERLDIIDPEKITKAAKSANWQTLGTNDDGSEMPKNPSGS--KYNSLLRIKSEIS 140 (182)
T ss_dssp TEEE-HHHHHS-HHHHC----EEEEEEEBS-SSGGGHHHHHHS-BSEEEEEESS-TTTEEEESSS--STTEEEEEE---S
T ss_pred cchhhHHHHhhcccchhhcccceEEEeeccccCHhHhhhhhcccceeeeccCCCccccccCcccc--cccceeeeeecCC
Confidence 5666666655444431123369999999732 12499999887777666666665 3578888887786
Q ss_pred CCCC---CcceEEEEeccc
Q 004967 686 DTAP---LGVYRIRHFGAA 701 (721)
Q Consensus 686 ~~~~---~G~YRi~~~G~~ 701 (721)
.-+. .|.|||.+.-.-
T Consensus 141 nP~KALvrGlYRI~FTtyk 159 (182)
T PF12103_consen 141 NPTKALVRGLYRIGFTTYK 159 (182)
T ss_dssp SS-SSB-SEEEEEEEEEST
T ss_pred CchHhhhheeeEeeeEEec
Confidence 5433 599999885433
No 19
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=27.06 E-value=1.3e+02 Score=28.95 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCCcceEEEEecCCCCCceeEEEEEE--EcCCCCCCcceEEEEe
Q 004967 657 DDDFCLRFKWSRPSKLSARSMATIEW--RIPDTAPLGVYRIRHF 698 (721)
Q Consensus 657 D~dw~t~~~W~r~~~~~~~s~~ti~W--~ip~~~~~G~YRi~~~ 698 (721)
...|.....|.... +....++.| +||.++++|.|.|...
T Consensus 74 ~~~~~~~~~~~~~~---g~~~~~~h~~i~IPa~a~~G~YH~~i~ 114 (132)
T PF15418_consen 74 EKPWVFEQDYDIYG---GKKNYDFHEHIDIPADAPAGDYHFMIT 114 (132)
T ss_pred ccCcEEEEEEcccC---CcccEeEEEeeeCCCCCCCcceEEEEE
Confidence 45688888885544 333455555 5799999999999875
No 20
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=25.70 E-value=1.5e+02 Score=28.26 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=14.0
Q ss_pred EEEcCCC-CCCcceEEEEec
Q 004967 681 EWRIPDT-APLGVYRIRHFG 699 (721)
Q Consensus 681 ~W~ip~~-~~~G~YRi~~~G 699 (721)
.|-.+.. -.||+|||++--
T Consensus 67 ~~~~~~~tl~~GtYr~~~dT 86 (132)
T KOG3006|consen 67 DWVSPDFTLIPGTYRLVFDT 86 (132)
T ss_pred ecccchhhhccceEEEEEec
Confidence 4877654 458999999943
No 21
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=24.60 E-value=3e+02 Score=25.86 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=46.1
Q ss_pred CcccCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeC----CCceEEeecCCCcceEEEEecC-------CCCCceeEEEE
Q 004967 612 TTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHG----KDIWAPAYDDDDFCLRFKWSRP-------SKLSARSMATI 680 (721)
Q Consensus 612 ~~y~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~----~~~W~~v~~D~dw~t~~~W~r~-------~~~~~~s~~ti 680 (721)
.+|.+|+.++|+=.+.++ ... +.|+.--|..+ -|.|...-++ .+++.=--. ......+.+++
T Consensus 28 ~~y~pG~~~~Vtl~~~~~---~~F-~GF~lqAr~~~~~~~vG~f~~~~~~---~tk~~~c~~~~~avtH~~~~~k~~v~~ 100 (135)
T cd08544 28 NSYVPGETYTVTLSGSSP---SPF-RGFLLQARDASSNEPVGTFQLPPDS---GTKLLTCCGSDNAVTHSNNSKKTSVTF 100 (135)
T ss_pred CEECCCCEEEEEEECCCC---Cce-eEEEEEEEcCCCCcceEEEEeCCCc---ccEEecCCCCCCcceeCCCCCCceeEE
Confidence 389999999999988776 223 23433223221 1567654331 111111110 01134678999
Q ss_pred EEEcCCCCCCcceEEEEec
Q 004967 681 EWRIPDTAPLGVYRIRHFG 699 (721)
Q Consensus 681 ~W~ip~~~~~G~YRi~~~G 699 (721)
.|.-|.+. .|...|+---
T Consensus 101 ~W~AP~~~-~g~V~F~aTv 118 (135)
T cd08544 101 TWTAPSNG-SGCVTFRATV 118 (135)
T ss_pred EEECCCCC-CccEEEEEEE
Confidence 99988764 6888887643
No 22
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=23.31 E-value=3.7e+02 Score=25.16 Aligned_cols=67 Identities=18% Similarity=0.376 Sum_probs=40.8
Q ss_pred CCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEE
Q 004967 616 RGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRI 695 (721)
Q Consensus 616 ~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi 695 (721)
..|.++.+|.-| |+-.. ..+|.+.+.- . + -.++..|+-++.=...+ .++|.=.+|.+++=|.|++
T Consensus 48 ~~d~l~l~~~~G-~~P~~-~~gT~~~~~~-~--~----~~~~~~W~a~v~~~~~~------~~tv~V~spa~A~VG~y~l 112 (118)
T PF00868_consen 48 SKDQLSLEFETG-PNPSE-SKGTKVVFPV-S--S----SLDSSSWSARVESQDGN------SVTVSVTSPANAPVGRYKL 112 (118)
T ss_dssp TTEEEEEEEEES-SS--T-TTTSEEEEEE-C--S----SS-TSSSEEEEEEEETT------EEEEEEE--TTS--EEEEE
T ss_pred CCcEEEEEEEEe-ccccc-CCCcEEEEEE-c--c----CCCCCCEEEEEEecCCC------EEEEEEECCCCCceEEEEE
Confidence 358888888766 43333 4567777754 1 1 23466777666655433 4888999999999999998
Q ss_pred EE
Q 004967 696 RH 697 (721)
Q Consensus 696 ~~ 697 (721)
.-
T Consensus 113 ~v 114 (118)
T PF00868_consen 113 SV 114 (118)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 23
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=23.29 E-value=1.7e+02 Score=28.81 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=31.2
Q ss_pred EEEEEEEEeCCCCEEEEEEeccC---cccHHHHHHHHHHHHHHhCCCCCC-CcEEEEee
Q 004967 19 RARTFIVAEPQGNRVVFVNLDAC---MASQIVKIKVIERLKARYGDLYTE-KNVAISGI 73 (721)
Q Consensus 19 ~ARAlvl~d~~~~rvv~Vs~Dl~---~i~~~v~~~Vr~~L~~~~G~~i~~-~nVlIsAT 73 (721)
-|+++|.++ -++|.+++- .....+..+|+++|++. .+. .+|.||+=
T Consensus 92 ~A~vvv~~~-----~a~Vav~~~~~~~~~~~i~~~V~~~v~~~----~p~~~~V~Vs~D 141 (177)
T PF09580_consen 92 DATVVVTDD-----NAYVAVDLDFNRFNTKKIKKKVEKAVKSA----DPRIYNVYVSTD 141 (177)
T ss_pred EEEEEEECC-----EEEEEEEecccccchhHHHHHHHHHHHHh----CCCccEEEEEcC
Confidence 477777765 377777776 55566777777777664 344 79999863
No 24
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=23.09 E-value=3.6e+02 Score=33.35 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCcCcccccc-cccccccchhHHHHHHHHHH
Q 004967 30 GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVY-IVTSLGFVRQSFDALVDGIE 108 (721)
Q Consensus 30 ~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHSgP~g~~~~~l~-~i~~~g~~~~y~~~lv~~iv 108 (721)
|+-.+.|.+-..-+.+.....+.+.+++.+| ++.++|-|...-|...|.+...+--- ....+.....-.+.|.+++.
T Consensus 476 Gsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~ 553 (768)
T TIGR03196 476 GTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLK 553 (768)
T ss_pred CCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Confidence 5435666677777788888899999999999 99999999999998888643221110 01112234555566777776
Q ss_pred HHHHHHHhcCCcEEEEEEEEEe
Q 004967 109 KSVLQAHENLRPGSIFVNKGEL 130 (721)
Q Consensus 109 ~AI~~A~~~l~Pa~l~~g~g~~ 130 (721)
+.+.+.+ ...|..+.+..+.+
T Consensus 554 ~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 554 ARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHh-CCChhhEEEeCCee
Confidence 5543322 34444455544433
Done!