Query 004967
Match_columns 721
No_of_seqs 234 out of 560
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 11:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004967.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004967hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w8oa1 b.1.18.2 (A:403-505) S 59.7 23 0.0017 29.0 9.2 72 612-699 11-84 (103)
2 d1jmxa3 b.1.18.14 (A:282-363) 53.1 19 0.0014 28.6 7.2 61 613-699 12-72 (82)
3 d2vn6a1 b.2.2.2 (A:12-152) Coh 46.5 61 0.0044 27.2 10.3 108 613-720 10-139 (141)
4 d1aoha_ b.2.2.2 (A:) Cohesin d 43.4 90 0.0065 26.3 11.2 89 613-701 10-121 (143)
5 d1f86a_ b.3.4.1 (A:) Transthyr 37.9 13 0.00096 31.3 4.1 41 641-698 22-65 (115)
6 d2c9qa1 b.1.18.17 (A:1-102) Co 36.4 95 0.0069 24.5 10.3 23 618-645 19-41 (102)
7 d1ko3a_ d.157.1.1 (A:) Zn meta 35.5 19 0.0014 32.3 5.2 49 20-77 38-86 (230)
8 d1vc1a_ c.13.2.1 (A:) Anti-sig 35.3 31 0.0022 27.5 6.0 38 467-504 4-41 (110)
9 d1fnfa3 b.1.2.1 (A:1327-1415) 32.5 27 0.002 26.3 5.0 23 675-698 14-36 (89)
10 d1ix2a_ b.1.18.17 (A:) Copper 31.8 1.1E+02 0.0083 24.0 10.2 23 618-645 18-40 (102)
11 d2ibga1 b.1.2.1 (A:573-667) He 27.7 20 0.0014 27.6 3.3 26 674-699 19-47 (95)
12 d2bw4a2 b.6.1.3 (A:166-338) Ni 24.5 85 0.0062 27.9 7.5 73 613-699 69-142 (173)
13 d2gmna1 d.157.1.1 (A:29-292) Z 24.4 54 0.0039 30.2 6.4 48 21-77 28-76 (264)
14 d1x5la1 b.1.2.1 (A:8-105) Ephr 24.1 50 0.0037 25.4 5.3 46 674-720 16-63 (98)
15 d1fnfa2 b.1.2.1 (A:1236-1326) 23.8 40 0.0029 25.3 4.5 8 678-685 17-24 (91)
16 d1x8ha_ d.157.1.1 (A:) Zn meta 22.8 38 0.0028 30.3 4.8 48 21-77 24-71 (228)
17 d2fnba_ b.1.2.1 (A:) Fibronect 22.0 20 0.0015 27.5 2.3 8 678-685 22-29 (95)
18 d1oo2a_ b.3.4.1 (A:) Transthyr 21.6 15 0.0011 31.0 1.5 43 640-699 22-67 (116)
19 d2c9qa1 b.1.18.17 (A:1-102) Co 21.6 57 0.0042 25.9 5.2 16 686-701 72-87 (102)
20 d1hfoa_ d.80.1.3 (A:) Micropha 20.6 53 0.0039 26.9 4.9 47 23-72 47-98 (113)
21 d1wfna1 b.1.2.1 (A:8-113) Side 20.5 39 0.0028 26.3 3.9 9 677-685 26-34 (106)
22 d1yx0a1 d.108.1.1 (A:1-151) Hy 20.4 58 0.0042 27.9 5.3 53 158-211 43-97 (151)
No 1
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=59.73 E-value=23 Score=28.99 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=42.4
Q ss_pred CcccCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEE--cCCCCC
Q 004967 612 TTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWR--IPDTAP 689 (721)
Q Consensus 612 ~~y~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~--ip~~~~ 689 (721)
-...+|+++++...=-|--|.-.. ..-+.++- -..|++ .+.... |-.....+++|+ +|.+++
T Consensus 11 ~~v~pG~~~~~~vtVtN~g~~~~~-~~~~~~~~---P~GW~v-----------~~~~~~-L~pG~s~~~~~~Vt~p~~a~ 74 (103)
T d1w8oa1 11 VALEPGQQVTVPVAVTNQSGIAVP-KPSLQLDA---SPDWQV-----------QGSVEP-LMPGRQAKGQVTITVPAGTT 74 (103)
T ss_dssp EEECTTCEEEEEEEEECCSSSCBS-SCEEEEEC---CTTSEE-----------EEEECC-BCTTCEEEEEEEEECCTTCC
T ss_pred eeeCCCCeEEEEEEEEeCCCCcee-eeeEEEcC---CCCccc-----------cCccee-eCCCCcEEEEEEEECCCCCC
Confidence 367889999887777666554433 33345543 235764 222222 222233455554 588999
Q ss_pred CcceEEEEec
Q 004967 690 LGVYRIRHFG 699 (721)
Q Consensus 690 ~G~YRi~~~G 699 (721)
+|+|+|.-.-
T Consensus 75 ~G~Y~i~~~a 84 (103)
T d1w8oa1 75 PGRYRVGATL 84 (103)
T ss_dssp CEEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9999998743
No 2
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=53.09 E-value=19 Score=28.59 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=39.1
Q ss_pred cccCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCCceEEeecCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcc
Q 004967 613 TFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGV 692 (721)
Q Consensus 613 ~y~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~ 692 (721)
-.+.|.++++++.|.|=--...++.. +++... ...+ ...+++.-.|++|.++|.
T Consensus 12 g~q~G~~~evti~G~~L~~~~~l~~G-i~~~~v---------------------~~~~----~~~~~~~v~i~~d~p~G~ 65 (82)
T d1jmxa3 12 FIKAGGESEITLVGSGLAGKPDLGAG-VEVTEV---------------------LEQT----PTLVRLKARAAADAKPGQ 65 (82)
T ss_dssp EEETTCEEEEEEEEESCCSCEECCTT-EEEEEE---------------------EEEC----SSEEEEEEEECTTCCSEE
T ss_pred ccCCCCEEEEEEEecccCCccccCCC-cEEEEe---------------------eecC----CCeEEEEEEECCCCCCCc
Confidence 35789999999999655443333322 222211 1111 235677888999999999
Q ss_pred eEEEEec
Q 004967 693 YRIRHFG 699 (721)
Q Consensus 693 YRi~~~G 699 (721)
|++|-..
T Consensus 66 h~vrv~t 72 (82)
T d1jmxa3 66 REVAVGT 72 (82)
T ss_dssp EEEEETT
T ss_pred EEEEEEc
Confidence 9999843
No 3
>d2vn6a1 b.2.2.2 (A:12-152) Cohesin domain {Clostridium cellulolyticum [TaxId: 1521]}
Probab=46.45 E-value=61 Score=27.20 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=67.2
Q ss_pred cccCCCeEEEEEEcccCCC---------CCCCCCCeEEEEEEeCCC---ceEE--eecCCCcceEEEEecCCC----C-C
Q 004967 613 TFRRGEMVTVSFWSACPRN---------DLMTEGTFALVEILHGKD---IWAP--AYDDDDFCLRFKWSRPSK----L-S 673 (721)
Q Consensus 613 ~y~~g~~v~~~F~~~~Prn---------~l~~~~tf~~Ver~~~~~---~W~~--v~~D~dw~t~~~W~r~~~----~-~ 673 (721)
+..+|++|++-..--|..| .+..+.+.|++.....+. .|.. -.+..+=..+|.|..... . -
T Consensus 10 s~~~G~tV~V~V~~~~v~~~~~i~~~~~~i~yDp~~L~~~~v~~g~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~i~~ 89 (141)
T d2vn6a1 10 NGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEVVSVDAGPIVKNAAVNFSSSASNGTISFLFLDNTITDELITA 89 (141)
T ss_dssp EECTTCEEEEEEEEESTTTTTCBCEEEEEEECCTTTEEEEEEEECTTCTTHHHHEEEEEETTEEEEEEECTTSSSSCBCS
T ss_pred EeCCCCEEEEEEEEEccCCCCceEEEEEEEEeCCCeEEEEeeeccccccCCccceEEecCCCEEEEEEEccCCCcceecC
Confidence 5677999998876665433 223355667776543332 2221 122333347788876432 1 1
Q ss_pred ceeEEEEEEEcCCCCCCcceEEEEeccccc---cCCCceeeEEeccceEE
Q 004967 674 ARSMATIEWRIPDTAPLGVYRIRHFGAAKS---LLGSTRHFTGSSSAFVV 720 (721)
Q Consensus 674 ~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~---~~g~~~~~~g~s~~F~v 720 (721)
....++|+-+++++++.|.|-|...+...- -...+.+....+...+|
T Consensus 90 ~g~ia~l~Fkv~~~a~~G~~~i~~~~~~~~~d~~~~~i~~v~~~~G~ItV 139 (141)
T d2vn6a1 90 DGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTI 139 (141)
T ss_dssp CEEEEEEEEEECCCSSCEEEEEEEEEEEEEECTTSCBCSCEEEECEEEEE
T ss_pred CcEEEEEEEEECCCCCCceEEEEECCccEEecCCCCeeeeEEecCEEEEE
Confidence 356799999999999999999998765432 23456666666666665
No 4
>d1aoha_ b.2.2.2 (A:) Cohesin domain {Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]}
Probab=43.39 E-value=90 Score=26.26 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=60.9
Q ss_pred cccCCCeEEEEEEccc-CCCCC-------CCCCCeEEEEEEeCCC---------ceEEeecCCCcceEEEEecCCC----
Q 004967 613 TFRRGEMVTVSFWSAC-PRNDL-------MTEGTFALVEILHGKD---------IWAPAYDDDDFCLRFKWSRPSK---- 671 (721)
Q Consensus 613 ~y~~g~~v~~~F~~~~-Prn~l-------~~~~tf~~Ver~~~~~---------~W~~v~~D~dw~t~~~W~r~~~---- 671 (721)
+-++|++|++.-...+ |.+++ .-+.+.|+|.....+. .|....++.+-.+.+.|.....
T Consensus 10 ~~~~G~tv~V~V~~~~v~~~~v~~~~~~i~YD~~~Le~~~v~~G~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~~~~g~~ 89 (143)
T d1aoha_ 10 NAKPGDTVRIPVRFSGIPSKGIANCDFVYSYDPNVLEIIEIEPGELIVDPNPTKSFDTAVYPDRKMIVFLFAEDSGTGAY 89 (143)
T ss_dssp EECTTCEEEEEEEEESCCTTCBSEEEEEEECCTTTEEEEEEEECTTCCCSSHHHHEEEEEETTTTEEEEEEECTTSSSTT
T ss_pred EecCCCEEEEEEEEeccCCCceEEEEEEEEECCceeEEeeecccceecCCCCCceeEEEecCCCCeEEEEEeccCCCCcc
Confidence 4567999998775544 44433 2367777776543222 4666677777778888876432
Q ss_pred -CCc-eeEEEEEEEcCCCCCCcceEEEEeccc
Q 004967 672 -LSA-RSMATIEWRIPDTAPLGVYRIRHFGAA 701 (721)
Q Consensus 672 -~~~-~s~~ti~W~ip~~~~~G~YRi~~~G~~ 701 (721)
..+ ...+||+-++..++++|+|-|.+.+.+
T Consensus 90 ~i~g~G~iatl~Fkv~~~a~~G~~~i~~~~~~ 121 (143)
T d1aoha_ 90 AITEDGVFATIVAKVKSGAPNGLSVIKFVEVG 121 (143)
T ss_dssp CBCSSEEEEEEEEEECTTCCSEEEEEEEEEEE
T ss_pred eEcCCcEEEEEEEEECCCCCCceEEEEEcccc
Confidence 112 268899999999999999999997543
No 5
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.86 E-value=13 Score=31.32 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=25.1
Q ss_pred EEEEEeCCCceEEee---cCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEe
Q 004967 641 LVEILHGKDIWAPAY---DDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHF 698 (721)
Q Consensus 641 ~Ver~~~~~~W~~v~---~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~ 698 (721)
++.++..++.|+.++ +|+|= ++. +|.......+|+|||++.
T Consensus 22 ~L~~~~~~~~~~~i~~~~Td~dG----------------Ri~-~~~~~~~~~~G~Y~l~F~ 65 (115)
T d1f86a_ 22 HVFRKAADDTWEPFASGKTSESG----------------ELH-GLTTEEEFVEGIYKVEID 65 (115)
T ss_dssp EEEEECTTSCEEEEEEEECCTTS----------------EEC-CSCCTTTCCSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCCC----------------ccc-CccCcccCCCeEEEEEEE
Confidence 334655667788665 44432 333 454555678899999963
No 6
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=36.39 E-value=95 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=13.9
Q ss_pred CeEEEEEEcccCCCCCCCCCCeEEEEEE
Q 004967 618 EMVTVSFWSACPRNDLMTEGTFALVEIL 645 (721)
Q Consensus 618 ~~v~~~F~~~~Prn~l~~~~tf~~Ver~ 645 (721)
+.|+.+| ...+....+-+.|-..
T Consensus 19 ~~v~L~F-----~e~v~~~~s~~~l~~~ 41 (102)
T d2c9qa1 19 AKIELHF-----SENLVTQFSGAKLVMT 41 (102)
T ss_dssp SSEEEEE-----SSCCCTTTCEEEEEEE
T ss_pred cEEEEEE-----CCccccccceEEEEec
Confidence 5688889 3445555555666543
No 7
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}
Probab=35.50 E-value=19 Score=32.31 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=31.0
Q ss_pred EEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 004967 20 ARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (721)
Q Consensus 20 ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHS 77 (721)
+.+++|.+ ++. .|.+|..+ .......+.+.|.+..| .+... |-.||.|.
T Consensus 38 ~N~~li~~--~~~--~vLID~g~-~~~~~~~~~~~i~~~~~--~~i~~--ii~TH~H~ 86 (230)
T d1ko3a_ 38 SNGLIVRD--GDE--LLLIDTAW-GAKNTAALLAEIEKQIG--LPVTR--AVSTHFHD 86 (230)
T ss_dssp EEEEEEEE--TTE--EEEESCCS-SHHHHHHHHHHHHTTTC--CCEEE--EECSSSSH
T ss_pred cEEEEEEe--CCE--EEEECCCC-CHHHHHHHHHHHHHhcC--CeeEE--EEECCCCc
Confidence 35677776 333 45567654 45567777888877666 45544 44799984
No 8
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=35.31 E-value=31 Score=27.48 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=34.1
Q ss_pred eeeeEEEECCEEEEecCCchhhHHHHHHHHHHHHHHhh
Q 004967 467 LPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTT 504 (721)
Q Consensus 467 v~iqilriG~l~iv~~PgE~tt~~G~rlr~~v~~~~~~ 504 (721)
+.+.+..-.+..|+.+.||++.....++++.+.+.+..
T Consensus 4 ~~~~~~~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~ 41 (110)
T d1vc1a_ 4 LKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFIST 41 (110)
T ss_dssp CEEEEEEETTEEEEEEESCBSTTTHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEEhHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999886654
No 9
>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.55 E-value=27 Score=26.35 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=13.8
Q ss_pred eeEEEEEEEcCCCCCCcceEEEEe
Q 004967 675 RSMATIEWRIPDTAPLGVYRIRHF 698 (721)
Q Consensus 675 ~s~~ti~W~ip~~~~~G~YRi~~~ 698 (721)
.+.++|+|+-|.+ +-.-|+|.|.
T Consensus 14 ~~sv~l~W~~p~~-~~~~Y~i~~~ 36 (89)
T d1fnfa3 14 ANSFTVHWIAPRA-TITGYRIRHH 36 (89)
T ss_dssp SSEEEEEEECCSS-CCSEEEEEEE
T ss_pred CCEEEEEEEeCCC-EEeeEEEEEE
Confidence 4557777776543 3345777764
No 10
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}
Probab=31.83 E-value=1.1e+02 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=14.7
Q ss_pred CeEEEEEEcccCCCCCCCCCCeEEEEEE
Q 004967 618 EMVTVSFWSACPRNDLMTEGTFALVEIL 645 (721)
Q Consensus 618 ~~v~~~F~~~~Prn~l~~~~tf~~Ver~ 645 (721)
+.|+.+| ...++...+-+.|...
T Consensus 18 ~~I~L~F-----~e~v~~~~s~i~v~~~ 40 (102)
T d1ix2a_ 18 EKIQLNF-----SENLTVKFSGAKLTMT 40 (102)
T ss_dssp SCEEEEE-----SSCCCGGGCEEEEEEE
T ss_pred CEEEEEe-----CCccccccceEEEEeC
Confidence 5688899 3455555566677553
No 11
>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=27.71 E-value=20 Score=27.64 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=16.4
Q ss_pred ceeEEEEEEEcCCCCCCc---ceEEEEec
Q 004967 674 ARSMATIEWRIPDTAPLG---VYRIRHFG 699 (721)
Q Consensus 674 ~~s~~ti~W~ip~~~~~G---~YRi~~~G 699 (721)
..+.++|.|+.|.....+ -|+|.|.-
T Consensus 19 s~tsv~l~W~~P~~~~~~~i~gY~i~y~~ 47 (95)
T d2ibga1 19 SETAVVLHWSLASDADEHLITGYYAYYRP 47 (95)
T ss_dssp SSSCEEEEEECCTTCCGGGCCEEEEEEEE
T ss_pred CCCEEEEEEEeeeeccCCcccccceeEee
Confidence 345688888876544332 28888764
No 12
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=24.50 E-value=85 Score=27.93 Aligned_cols=73 Identities=14% Similarity=-0.017 Sum_probs=44.8
Q ss_pred cccCCCeEEEEEEcccCCCCCCCCCCeEEEEEEeCCCceEEeecCCCcc-eEEEEecCCCCCceeEEEEEEEcCCCCCCc
Q 004967 613 TFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFC-LRFKWSRPSKLSARSMATIEWRIPDTAPLG 691 (721)
Q Consensus 613 ~y~~g~~v~~~F~~~~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~dw~-t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G 691 (721)
..+.||+|.+.|-++|....+++. ++.|..|..++.+. .--++..+..+.+.+.+.++.+.+ .||
T Consensus 69 ~akvGErV~i~~~~~n~~s~fHli-----------G~hFD~V~~~G~~~~~p~~~~qTv~VppG~a~~ve~~f~---~PG 134 (173)
T d2bw4a2 69 TAAVGERVLVVHSQANRDTRPHLI-----------GGHGDYVWATGKFRNPPDLDQETWLIPGGTAGAAFYTFR---QPG 134 (173)
T ss_dssp EEETTCEEEEEEEESSSCBCEEEE-----------TCCEEEEETTCCTTSCCEEEESCCCBCTTEEEEEEEECC---SCE
T ss_pred ccccCCeEEEEecCCCCCccceec-----------cceeEEECCCCcccCCCcCCceeEEccCCccEEEEEEec---Cce
Confidence 457799998777554443333322 45566666666543 223444444444677788888774 489
Q ss_pred ceEEEEec
Q 004967 692 VYRIRHFG 699 (721)
Q Consensus 692 ~YRi~~~G 699 (721)
+|-++=..
T Consensus 135 ~y~~v~H~ 142 (173)
T d2bw4a2 135 VYAYVNHN 142 (173)
T ss_dssp EEEEEESS
T ss_pred EEEEEech
Confidence 99987654
No 13
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=24.45 E-value=54 Score=30.18 Aligned_cols=48 Identities=13% Similarity=0.380 Sum_probs=31.3
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEeeccCC
Q 004967 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (721)
Q Consensus 21 RAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nV-lIsATHTHS 77 (721)
-+++|.. ++.+++ +|.+. + .....+++.|++ .| ++...| .|-.||.|.
T Consensus 28 n~~lI~~--~~~~vL--IDtG~-~-~~~~~~~~~i~~-~~--~~~~~I~~ii~TH~H~ 76 (264)
T d2gmna1 28 AVYVIKT--SQGLIL--MDTAM-P-QSTGMIKDNIAK-LG--FKVADIKLILNTHAHL 76 (264)
T ss_dssp CCEEEEE--TTEEEE--ECCCC-G-GGHHHHHHHHHH-TT--CCGGGEEEEECSCCSH
T ss_pred EEEEEEE--CCEEEE--EcCCC-c-chHHHHHHHHHH-cC--CCchheEEEEECCCCc
Confidence 4567766 334433 68664 2 346678888876 67 677666 677899984
No 14
>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.06 E-value=50 Score=25.43 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=25.5
Q ss_pred ceeEEEEEEEcCCCC--CCcceEEEEeccccccCCCceeeEEeccceEE
Q 004967 674 ARSMATIEWRIPDTA--PLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVV 720 (721)
Q Consensus 674 ~~s~~ti~W~ip~~~--~~G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v 720 (721)
+.+.++|.|..|.+. +--.|+|+|.-.... .....-+.+....|.|
T Consensus 16 s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~-~~~~~~~~~~~~~~~i 63 (98)
T d1x5la1 16 GQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE-MQSYSTLKAVTTRATV 63 (98)
T ss_dssp CSSCEEEEECCCSCCCSCCCEEEEEEEESSSC-CSSCEEEEESSSEEEE
T ss_pred cCCEEEEEEECCCCCCCCEEEEEEEeeccccc-ceeeEEecCCceEEEE
Confidence 456688899866532 123688888643322 1223344555555655
No 15
>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.80 E-value=40 Score=25.29 Aligned_cols=8 Identities=25% Similarity=0.862 Sum_probs=3.4
Q ss_pred EEEEEEcC
Q 004967 678 ATIEWRIP 685 (721)
Q Consensus 678 ~ti~W~ip 685 (721)
++|.|+.|
T Consensus 17 v~l~W~~p 24 (91)
T d1fnfa2 17 MRVTWAPP 24 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 44444433
No 16
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}
Probab=22.78 E-value=38 Score=30.33 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=28.2
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 004967 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (721)
Q Consensus 21 RAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~Vr~~L~~~~G~~i~~~nVlIsATHTHS 77 (721)
.++++.. ++.+++ +|... .....+++.+.|++..+ -+.. .|-.||.|.
T Consensus 24 N~~~i~~--~~g~vl--ID~g~-~~~~~~~l~~~i~~~~~--~~i~--~ii~TH~H~ 71 (228)
T d1x8ha_ 24 NSMVYFG--AKGVTV--VGATW-TPDTARELHKLIKRVSR--KPVL--EVINTNYHT 71 (228)
T ss_dssp EEEEEEC--SSCEEE--ESCCS-SHHHHHHHHHHHHTTCC--SCEE--EEECSSSSH
T ss_pred eEEEEEE--CCEEEE--EeCCC-CHHHHHHHHHHHHHhcC--CCce--EEEECCCCc
Confidence 4566654 344443 58664 56667788888876333 2222 345689886
No 17
>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.00 E-value=20 Score=27.51 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.3
Q ss_pred EEEEEEcC
Q 004967 678 ATIEWRIP 685 (721)
Q Consensus 678 ~ti~W~ip 685 (721)
++|.|+.|
T Consensus 22 i~l~W~~p 29 (95)
T d2fnba_ 22 IGLRWTPL 29 (95)
T ss_dssp EEEECCCC
T ss_pred EEEEEEec
Confidence 44444433
No 18
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=21.63 E-value=15 Score=30.97 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=24.7
Q ss_pred EEEEEEeCCCceEEee---cCCCcceEEEEecCCCCCceeEEEEEEEcCCCCCCcceEEEEec
Q 004967 640 ALVEILHGKDIWAPAY---DDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFG 699 (721)
Q Consensus 640 ~~Ver~~~~~~W~~v~---~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~G 699 (721)
+++.|+..+|.|+.++ +|+|=- +. +|......++|+|||++.-
T Consensus 22 V~L~~~~~~g~~~~i~~~~Td~dGR----------------i~-~~~~~~~~~~G~Yel~F~~ 67 (116)
T d1oo2a_ 22 LKVSQKTADGGWTQIATGVTDATGE----------------IH-NLITEQQFPAGVYRVEFDT 67 (116)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTSC----------------CT-TCSCGGGCCSEEEEEEECH
T ss_pred EEEEEECCCCCeEEEEEEEECCCCc----------------Cc-cccCcccccCeeEEEEEEh
Confidence 3445666667787665 454431 11 1333344578999998853
No 19
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=21.59 E-value=57 Score=25.94 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=7.9
Q ss_pred CCCCCcceEEEEeccc
Q 004967 686 DTAPLGVYRIRHFGAA 701 (721)
Q Consensus 686 ~~~~~G~YRi~~~G~~ 701 (721)
...++|+|+|.|+.-+
T Consensus 72 ~~l~~G~Y~V~wrvvs 87 (102)
T d2c9qa1 72 SPLTAGTYKVDWRAVS 87 (102)
T ss_dssp SCCCSEEEEEEEEECC
T ss_pred CCCCCceEEEEEEEEe
Confidence 3344555555555433
No 20
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=20.63 E-value=53 Score=26.85 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred EEEEeCCCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEe
Q 004967 23 FIVAEPQGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISG 72 (721)
Q Consensus 23 lvl~d~~~~rvv~Vs~Dl~~-i~~~----v~~~Vr~~L~~~~G~~i~~~nVlIsA 72 (721)
+.+.. .....++|.+=.++ +.++ +..++-+.|++++| |+.++|+|.-
T Consensus 47 m~fgG-s~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~Lg--I~~~RiyI~f 98 (113)
T d1hfoa_ 47 LSFGG-STNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLG--IPKNRMYIHF 98 (113)
T ss_dssp EEETT-BCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEE
T ss_pred EEEcC-CCCcEEEEEEEEecCCChHHhHHHHHHHHHHHHHHcC--CCcceEEEEE
Confidence 33443 46788888887774 6655 55677778899999 9999999965
No 21
>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.54 E-value=39 Score=26.33 Aligned_cols=9 Identities=22% Similarity=0.793 Sum_probs=4.3
Q ss_pred EEEEEEEcC
Q 004967 677 MATIEWRIP 685 (721)
Q Consensus 677 ~~ti~W~ip 685 (721)
.++|.|+-|
T Consensus 26 sv~l~W~~P 34 (106)
T d1wfna1 26 SLKVSWQEP 34 (106)
T ss_dssp EEEEECCCC
T ss_pred EEEEEEECC
Confidence 355555443
No 22
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=20.43 E-value=58 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=39.4
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCc--HHHHHHHHHHHhh
Q 004967 158 DKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDN--KGAAARFMEDWFE 211 (721)
Q Consensus 158 D~~l~vL~f~~~dG~~ia~L~~yA~HpTsl~~~N~lIS~D~--~G~a~~~lE~~~~ 211 (721)
+|+..++-+++ +|+++|.+...-.......-.+..|..+| .|+++.+++...+
T Consensus 43 ~~~~~~~va~~-~~~~vG~~~~~~~~~~~~~i~~~~V~p~~Rg~Glg~~Ll~~~~~ 97 (151)
T d1yx0a1 43 GPEITFWSAWE-GDELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHIIE 97 (151)
T ss_dssp SSSCEEEEEEC-SSSEEEEEEEEEEETTEEECCCCCCSTTTCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEEEE-CCEEEEEEEEEeccCceEEEEeeeeCHHHHhCChhHHHHHHHHH
Confidence 45666666666 68999988776555555555667889997 8999999988754
Done!