BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004968
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 249/636 (39%), Positives = 353/636 (55%), Gaps = 44/636 (6%)
Query: 74 WDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVA 133
+D P L LV++ L+ L + L +L E+R L VS++ S L VELTVA
Sbjct: 3 FDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVA 62
Query: 134 LHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGH 193
LH+V++ P D+++WDVG Q Y HKILTGRR I T+R+K G+ + R ESEYD + GH
Sbjct: 63 LHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGH 122
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
S+SAG+G+AVA + +GK V VI +G AG A+EA ++AG + + +VILND+
Sbjct: 123 SSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDN- 181
Query: 254 HSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313
E S ++ AL++ L+++ S K + LRE K + + + E + +E+
Sbjct: 182 -------EXSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGV-PPIKELLKRTEEHI 233
Query: 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAE 373
+G + P TLFEELG YIGPVDGH++ LI+ L+ L GP +H+ T++ R E
Sbjct: 234 KGXVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNXRDL--KGPQFLHIXTKKGRGYE 289
Query: 374 DTQKS----EAIEKQQEGAS----DSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVH 425
+K A+ K + S LP +YS+ + D E A KD + +
Sbjct: 290 PAEKDPITFHAVPKFDPSSGCLPKSSGGLP--SYSKIFGDWLCET----AAKDNKLXAIT 343
Query: 426 AGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485
F KFP+RYFDV +AEQHAVTF+AGLA GG KP I S FLQRAYDQV
Sbjct: 344 PAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQV 403
Query: 486 VNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545
++DV Q+LPV F I AG+VG+DG T GAFD++++ C+P ++ PSDE+E + T
Sbjct: 404 LHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYT 463
Query: 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKA 605
+D P RYPRG V +L +P IGKG V G+ +A+L +G + K
Sbjct: 464 GYHYNDGPSAVRYPRGNAVGVELTPLEKLP--IGKGIVKRRGEKLAILNFGTLXPEAAKV 521
Query: 606 RALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALD 664
L + T+ D RF KPLD L+ E +H L+TVEE +I GG GS V+
Sbjct: 522 AESL-----NATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGVNE----- 571
Query: 665 GLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 697
+L + K P++ LPD +I + + A GL
Sbjct: 572 -VLXAHRKPVPVLNIGLPDFFIPQGTQEEXRAELGL 606
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 226/638 (35%), Positives = 344/638 (53%), Gaps = 30/638 (4%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD + P LK L+ ++L L E+R E+ + S+ L SSL AV++ ALH+V
Sbjct: 10 TPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVL 69
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+P D+IL+DVG Q YAHKILTGRR + ++K+ GISG+T SESE+D GH S+
Sbjct: 70 DSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSL 129
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
+ LGMA+ARD +GK + VI +G+ G A A++ G + M+++LND+ S+
Sbjct: 130 TNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSI-- 187
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
++ A++ + +Q K F++ K + + + + ++ ++ R
Sbjct: 188 ------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
P F +G+ Y+GPVDGHN+++L+ +L+ + L GP ++H+VT + + ++
Sbjct: 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLD--GPTILHIVTTKG-KGLSYAEA 298
Query: 379 EAIEKQQEGASDSNS---LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ 435
+ I D + +P YS + F EA+ A+ D VV M L
Sbjct: 299 DPIYWHGPAKFDPATGEYVPSSAYS--WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLV 356
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
F P RY DVG+AE+ AVT +AG+A G++P I S FLQRAYDQV++DV + L
Sbjct: 357 EFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLN 416
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
V F I AG+VG+DG T G FD++F+ +P + + P D EL M+ A D P
Sbjct: 417 VTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGML-KYAQTHDGPFA 475
Query: 556 FRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGID 615
RYPRG + +P ++ G+ + L G DV +L G + LKA L +G
Sbjct: 476 IRYPRGNTAQ--VPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG-- 531
Query: 616 VTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGL-LDSGVKW 673
V +ARF KPLD +++RE+ LITVE+ + +GGFG V AL+ + L V
Sbjct: 532 --VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAV--LEALNSMNLHPTV-- 585
Query: 674 RPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711
R + +PD + EHA+ A AG+ I T L+ LG
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAI-RTVLAELG 622
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLK-PFCIIPSAFLQRAYDQVVNDVDQQR 493
++F+++ P+R+ + +AEQ+ V+ + G A PFC +AF RA+DQ+ +
Sbjct: 347 EIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISES 406
Query: 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD---EDELVDMVATVASI 549
+ + G+ +G DGP+Q D+ +P V PSD ++ V++ A I
Sbjct: 407 -NINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGI 465
Query: 550 DDRPVCF---RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKD--VALLGYGAMVQNCLK 604
CF P AI+ + + ++G+ KV+++ KD V ++G G + L
Sbjct: 466 -----CFIRTSRPENAIIYNNNEDF-----QVGQAKVVLKSKDDQVTVIGAGVTLHEALA 515
Query: 605 ARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSI-GGFGSHVS 658
A LL K I++ V D KPLD KL+ + + ++TVE+ GG G VS
Sbjct: 516 AAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 571
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 23/236 (9%)
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLK-PFCIIPSAFLQRAYDQVVNDVDQQR 493
++F+++ P+R+ + +AEQ+ V+ + G A PFC +AF RA+DQ+ +
Sbjct: 345 EIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISES 404
Query: 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD---EDELVDMVATVASI 549
+ + G+ +G DGP+Q D+ +P V PSD ++ V++ A
Sbjct: 405 -NINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA----- 458
Query: 550 DDRPVCF---RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKD--VALLGYGAMVQNCLK 604
+ + +CF P AI+ + + ++G+ KV+++ KD V ++G G + L
Sbjct: 459 NTKGICFIRTSRPENAIIYNNNEDF-----QVGQAKVVLKSKDDQVTVIGAGVTLHEALA 513
Query: 605 ARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSI-GGFGSHVS 658
A LL K I++ V D KPLD KL+ + + ++TVE+ GG G VS
Sbjct: 514 AAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 569
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 123/300 (41%), Gaps = 58/300 (19%)
Query: 404 DDCFIEALVMEAEKDKDI-VVVHAGMEMD-----------------LSLQLFQEKF-PER 444
DD + +VM A K I + +H ME D L + E+F PER
Sbjct: 40 DDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPER 99
Query: 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDVDQQR---------- 493
D + E + F+ G+A GLKP I F+ D+++N + + R
Sbjct: 100 VIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP 159
Query: 494 LPVRFVI---TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550
L VR + T GL S+ P + F+ P ++V+ PS ++ D
Sbjct: 160 LVVRTPVGSGTRGGLYHSNSP------EAIFVHT-PGLVVVMPSTPYNAKGLLKAAIRGD 212
Query: 551 DRPVCF-------RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCL 603
D PV F R PR + D +EIGK +V EG DV L+ YGA+V L
Sbjct: 213 D-PVVFLEPKILYRAPREEVPEGDYV------VEIGKARVAREGDDVTLVTYGAVVHKAL 265
Query: 604 KARALLSKLGIDVTVADARFCKPLDIKLV-RELCQNHTFLITVEEGSIGGFGSHVSHFIA 662
+A ++ V V D + PLD V + + + +I + GG G+ V +A
Sbjct: 266 EA---AERVKASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVA 322
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 41/280 (14%)
Query: 397 GNYSRTYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMA 451
G+ T D + + E E+D+ + V +S L+++ +R D ++
Sbjct: 11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 70
Query: 452 EQHAVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDVDQ--------QRLPVRFVI-- 500
E + G A GL+P C + F +A DQV+N + Q +P+ F
Sbjct: 71 EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN 130
Query: 501 -TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC---- 555
SAG+ +QC F + C P + V++P + ++ ++ + A D+ PV
Sbjct: 131 GASAGVAAQH--SQC--FAAWYGHC-PGLKVVSPWNSEDAKGLIKS-AIRDNNPVVVLEN 184
Query: 556 -------FRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
F +P A + L I IGK K+ +G + ++ + V +CL+A A+
Sbjct: 185 ELMYGVPFEFPPEAQSKDFL-------IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAV 237
Query: 609 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648
LSK G++ V + R +P+D++ + L+TVE G
Sbjct: 238 LSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 277
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 41/275 (14%)
Query: 402 TYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
T D + + E E+D+ + V +S L+++ +R D ++E
Sbjct: 4 TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFA 63
Query: 457 TFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDVDQ--------QRLPVRFVI---TSAG 504
+ G A GL+P C + F +A DQV+N + Q +P+ F SAG
Sbjct: 64 GIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAG 123
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC--------- 555
+ +QC F + C P + V++P + ++ ++ + A D+ PV
Sbjct: 124 VAAQH--SQC--FAAWYGHC-PGLKVVSPWNSEDAKGLIKS-AIRDNNPVVVLENELMYG 177
Query: 556 --FRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
F +P A + L I IGK K+ +G + ++ + V +CL+A A+LSK G
Sbjct: 178 VPFEFPPEAQSKDFL-------IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 230
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648
++ V + R +P+D++ + L+TVE G
Sbjct: 231 VECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 265
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 118/268 (44%), Gaps = 32/268 (11%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF------QEKFPE-RYFDVGMAEQH 454
T +AL +E + D ++++ G ++ ++ +F Q +F E R FD +AE
Sbjct: 4 TMVQAITDALRIELKNDPNVLIF--GEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 455 AVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRF----------VITSAG 504
+ GLA G +P I F Y +V++ + Q +R+ I S
Sbjct: 62 IGGLAIGLALQGFRPVPEI--QFFGFVY-EVMDSICGQMARIRYRTGGRYHMPITIRSPF 118
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF----RYPR 560
G P ++ P + V+ PS + ++ + A D+ PV F + R
Sbjct: 119 GGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLIS-AIRDNDPVIFLEHLKLYR 177
Query: 561 GAIVRTDLP-GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619
R ++P G IPI GK + EGKD+ ++ YGAMV LKA A L K GI V
Sbjct: 178 S--FRQEVPEGEYTIPI--GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVV 233
Query: 620 DARFCKPLDIKLVRELCQNHTFLITVEE 647
D R +PLDI+ + + I V+E
Sbjct: 234 DLRTVQPLDIETIIGSVEKTGRAIVVQE 261
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 118/268 (44%), Gaps = 32/268 (11%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF------QEKFPE-RYFDVGMAEQH 454
T +AL +E + D ++++ G ++ ++ +F Q +F E R FD +AE
Sbjct: 5 TMVQAITDALRIELKNDPNVLIF--GEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 455 AVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRF----------VITSAG 504
+ GLA G +P I F Y +V++ + Q +R+ I S
Sbjct: 63 IGGLAIGLALQGFRPVPEI--QFFGFVY-EVMDSICGQMARIRYRTGGRYHMPITIRSPF 119
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF----RYPR 560
G P ++ P + V+ PS + ++ + A D+ PV F + R
Sbjct: 120 GGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLIS-AIRDNDPVIFLEHLKLYR 178
Query: 561 GAIVRTDLP-GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619
R ++P G IPI GK + EGKD+ ++ YGAMV LKA A L K GI V
Sbjct: 179 S--FRQEVPEGEYTIPI--GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVV 234
Query: 620 DARFCKPLDIKLVRELCQNHTFLITVEE 647
D R +PLDI+ + + I V+E
Sbjct: 235 DLRTVQPLDIETIIGSVEKTGRAIVVQE 262
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 41/280 (14%)
Query: 397 GNYSRTYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMA 451
G+ T D + E E+D+ + V +S L+++ +R D ++
Sbjct: 11 GSLQVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 70
Query: 452 EQHAVTFSAGLACGGLKPFCIIPS-AFLQRAYDQVVNDVDQ--------QRLPVRFVI-- 500
E + G A GL+P C + F +A DQV+N + Q +P+ F
Sbjct: 71 EXGFAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPN 130
Query: 501 -TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC---- 555
SAG+ +QC F + C P + V++P + ++ ++ + A D+ PV
Sbjct: 131 GASAGVAAQH--SQC--FAAWYGHC-PGLKVVSPWNSEDAKGLIKS-AIRDNNPVVVLEN 184
Query: 556 -------FRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
F +P A + L I IGK K+ +G + ++ + V +CL+A A+
Sbjct: 185 ELXYGVPFEFPPEAQSKDFL-------IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAV 237
Query: 609 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648
LSK G++ V + R +P D + + L+TVE G
Sbjct: 238 LSKEGVECEVINXRTIRPXDXETIEASVXKTNHLVTVEGG 277
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 21/247 (8%)
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDVDQQR- 493
L Q+ P+R D ++E V + G+A GL+P I A ++ +DQ+V+ V + R
Sbjct: 44 LLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRY 103
Query: 494 ---------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
L VR + + G+ G +Q + L + V P D L+
Sbjct: 104 RSGGQFTAPLVVR-MPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLL---- 158
Query: 545 TVASIDDRPVCFRYPRGAI--VRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNC 602
A D+ PV F P+ V+ ++P + IGK + EGKD+ L+ YG ++
Sbjct: 159 KAAIRDEDPVVFLEPKRLYRSVKEEVPE-EDYTLPIGKAALRREGKDLTLICYGTVMPEV 217
Query: 603 LKARALLSKLGIDVTVADARFCKPLDIKLV-RELCQNHTFLITVEEGSIGGFGSHVSHFI 661
L+A A L+K G+ V D R P D + V + + ++ + F S V+ I
Sbjct: 218 LQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATI 277
Query: 662 ALDGLLD 668
A D LLD
Sbjct: 278 AED-LLD 283
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 493 RLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551
+LPV +V T + VG DGPT + + PN+ V+ P+D +E V +
Sbjct: 477 QLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXPNVSVIRPADGNESVAAWRLALESTN 536
Query: 552 RPVCFRYPRGAIVRTDLPGYRGIPIE----IGKGKVLV-----EGKDVALLGYGAMVQNC 602
+P + R DLP G + + KG +V E DV LL G+ V
Sbjct: 537 KPTAL-----VLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLA 591
Query: 603 LKARALLSKLGIDVTV 618
++A+ L+ G+D +V
Sbjct: 592 VEAQKALAVDGVDASV 607
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 50/284 (17%)
Query: 416 EKDKDIVVVHAGMEMDLSLQLF------QEKFPE-RYFDVGMAEQHAVTFSAGLACGGLK 468
E+D ++VV G ++ +F Q K+ + R FD ++E V + G+ GL+
Sbjct: 21 ERDDNVVVY--GQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLR 78
Query: 469 PFCIIPSA-FLQRAYDQVVNDVDQQRL--------PVRFVI-TSAGLVGSDGPTQCGAFD 518
P I A + A DQ+V+++ + R P+ + G+ G +Q
Sbjct: 79 PVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAM 138
Query: 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCFRYPR--------GAIVRTDLP 569
T + L ++ P D L+ +ASI+ D PV F P+ G R P
Sbjct: 139 FTQVCGLRTVMPSNPYDAKGLL-----IASIECDDPVIFLEPKRLYNGPFDGHHDRPVTP 193
Query: 570 -----------GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
GY +P++ K + G DV++L YG V A+ + G+D V
Sbjct: 194 WSKHPHSAVPDGYYTVPLD--KAAITRPGNDVSVLTYGTTV---YVAQVAAEESGVDAEV 248
Query: 619 ADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFI 661
D R PLD+ + E + + V E + GFG+ + +
Sbjct: 249 IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLV 292
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 113/284 (39%), Gaps = 50/284 (17%)
Query: 416 EKDKDIVVVHAGMEMDLSLQLF------QEKFPE-RYFDVGMAEQHAVTFSAGLACGGLK 468
E+D ++VV G ++ +F Q K+ + R FD ++E V + G GL+
Sbjct: 20 ERDDNVVVY--GQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGXGAYGLR 77
Query: 469 PFCIIPSA-FLQRAYDQVVNDVDQQRL--------PVRF-VITSAGLVGSDGPTQCGAFD 518
P I A + A DQ+V++ + R P+ G+ G +Q
Sbjct: 78 PVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQTHSQSPEAX 137
Query: 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCFRYPR--------GAIVRTDLP 569
T + L + P D L+ +ASI+ D PV F P+ G R P
Sbjct: 138 FTQVCGLRTVXPSNPYDAKGLL-----IASIECDDPVIFLEPKRLYNGPFDGHHDRPVTP 192
Query: 570 -----------GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
GY +P++ K + G DV++L YG V A+ + G+D V
Sbjct: 193 WSKHPHSAVPDGYYTVPLD--KAAITRPGNDVSVLTYGTTV---YVAQVAAEESGVDAEV 247
Query: 619 ADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFI 661
D R PLD+ + E + + V E + GFG+ + +
Sbjct: 248 IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLV 291
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
+P FV T + +G DGPT + + PN+ V+ P+D E +
Sbjct: 448 VPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAXPNLFVIRPADAYETFYAWLVALRRKEG 507
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVL--VEGKDVALLGYGAMVQNCLKARALLS 610
P R A+ RG+ + G VL VE L+ G+ V L+A+ALL
Sbjct: 508 PTALVLTRQAVPLLSPEKARGL---LRGGYVLEDVEEPQGVLVATGSEVHLALRAQALLR 564
Query: 611 KLGIDVTVA-----DARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664
+ G+ V V + +P + +E+ ++ VE G+ G+ + +ALD
Sbjct: 565 EKGVRVRVVSLPSFELFAAQPEAYR--KEVLPPGLPVVAVEAGASLGWERYAHKVVALD 621
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 145 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 204 FAISTPVEKQ 213
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 146 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 205 FAISTPVEKQ 214
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT--SAGLVGSDGPTQCGAFDITFM 522
GG KPF F + + + ++P FV T S GL G DGPT + +
Sbjct: 471 GGYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASL 528
Query: 523 SCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK 582
+PN+ V P+D E + T A P C + R + + +E G G
Sbjct: 529 RLIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQNLAFNARTDAQLANVEKG-GY 586
Query: 583 VL------VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
VL + + + L+ G+ V+ +KA L++ GI V
Sbjct: 587 VLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARV 628
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT--SAGLVGSDGPTQCGAFDITFM 522
GG KPF F + + + ++P FV T S GL G DGPT + +
Sbjct: 471 GGYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASL 528
Query: 523 SCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK 582
+PN+ V P+D E + T A P C + R + + +E G G
Sbjct: 529 RLIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQNLAFNARTDAQLANVEKG-GY 586
Query: 583 VL------VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
VL + + + L+ G+ V+ +KA L++ GI V
Sbjct: 587 VLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARV 628
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 460 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 519
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGK--GKVL--VEGKDVALLGYGAMVQNCLKARALL 609
A+ R +LP G IE G VL V D+ L+ G+ V ++A L
Sbjct: 520 SII-----ALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTL 574
Query: 610 SKLGIDVTVADA----RFCK-PLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664
+ I V F K PL+ +L + ++ +++VE + +G + +D
Sbjct: 575 AAKNIKARVVSLPDFFTFDKQPLEYRL--SVLPDNVPIMSVEVLATTCWGKYAHQSFGID 632
Query: 665 GLLDSG 670
SG
Sbjct: 633 RFGASG 638
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 462 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 521
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGK--GKVL--VEGKDVALLGYGAMVQNCLKARALL 609
A+ R +LP G IE G VL V D+ L+ G+ V ++A L
Sbjct: 522 SII-----ALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTL 576
Query: 610 SKLGIDVTVADA----RFCK-PLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664
+ I V F K PL+ +L + ++ +++VE + +G + +D
Sbjct: 577 AAKNIKARVVSLPDFFTFDKQPLEYRL--SVLPDNVPIMSVEVLATTCWGKYAHQSFGID 634
Query: 665 GLLDSG 670
SG
Sbjct: 635 RFGASG 640
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 462 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 521
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGK--GKVL--VEGKDVALLGYGAMVQNCLKARALL 609
A+ R +LP G IE G VL V D+ L+ G+ V ++A L
Sbjct: 522 SII-----ALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTL 576
Query: 610 SKLGIDVTVADA----RFCK-PLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664
+ I V F K PL+ +L + ++ +++VE + +G + +D
Sbjct: 577 AAKNIKARVVSLPDFFTFDKQPLEYRL--SVLPDNVPIMSVEVLATTCWGKYAHQSFGID 634
Query: 665 GLLDSG 670
SG
Sbjct: 635 RFGASG 640
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 135 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 194
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 195 FICENNRYGMGTSVERAAAST 215
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTSVERAAAST 232
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTSVERAAAST 232
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G Y+ ++ AG + I ++ ++R
Sbjct: 145 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR 203
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 204 FAISTPVEKQ 213
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTAVERAAAST 232
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTAVERAAAST 232
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 146 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
Query: 254 HSLHPKIEES 263
+ +E+
Sbjct: 205 FAASTPVEKQ 214
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 135 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCI 194
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ +E + ++
Sbjct: 195 FICENNRYGXGTSVERAAAST 215
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 496 VRFVIT--SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
V +V+T S GL G DGPT + +PN++++ P+D +E RP
Sbjct: 468 VIYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRP 526
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIE-IGKGKVLVEGK------DVALLGYGAMVQNCLKAR 606
A+ R LP G IE + KG + D+ ++G G+ ++ KA
Sbjct: 527 SIL-----ALSRQKLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAA 581
Query: 607 ALLSKLGIDVTV 618
L K G V V
Sbjct: 582 DELRKEGKTVRV 593
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 498 FVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF 556
F+ T + VG DGPT ++ PN + P+D E V +A D P F
Sbjct: 440 FIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENVK-AWQIALNADIPSAF 498
Query: 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGI 614
R + + P + + +L E K+ LL G+ V CL++ L K G
Sbjct: 499 VLSRQKLKALNEPVFGDVK---NGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGF 555
Query: 615 DVTV 618
V
Sbjct: 556 ACNV 559
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 498 FVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF 556
F+ T + VG DGPT ++ PN + P+D E V +A D P F
Sbjct: 437 FIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENVK-AWQIALNADIPSAF 495
Query: 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGI 614
R + + P + + +L E K+ LL G+ V CL++ L K G
Sbjct: 496 VLSRQKLKALNEPVFGDVK---NGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGF 552
Query: 615 DVTV 618
V
Sbjct: 553 ACNV 556
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 596 GAMVQNCLKARALLS-KLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFG 654
GA++Q K + + GI VT + F KPL K+V L +T L G + G G
Sbjct: 234 GAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIV-SLAAGNTILRKAHPGGLIGVG 292
Query: 655 SHVSHFIALDGLLDSGVKWRPIVLP 679
+ + ++ L V P LP
Sbjct: 293 TTLDPYLTKSDALTGSVVGLPGTLP 317
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 445 YFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVITS 502
Y G+ E + G++ GG P+ F++ A + V + + +QR + + S
Sbjct: 403 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 462
Query: 503 AGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
GL G DGPT + + PNM P D+ E
Sbjct: 463 IGL-GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 497
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 444 RYFDVGMAEQHAVTFSAGL-ACGGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVIT 501
RY G+ E GL A G+ PF F+ A V + + R V +V T
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHR--VIYVAT 460
Query: 502 SAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
+ VG DGPT + + +PN+ V+ PSD+ E
Sbjct: 461 HDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTE 498
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 445 YFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVITS 502
Y G+ E + G++ GG P+ F++ A + V + + +QR + + S
Sbjct: 404 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 463
Query: 503 AGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
GL G DGPT + + PNM P D+ E
Sbjct: 464 IGL-GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 498
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 16/185 (8%)
Query: 444 RYFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT- 501
Y G+ E GL+ GG+KP+ F + + + ++ PV V +
Sbjct: 404 NYLSYGVREFGXAAIXNGLSLYGGIKPYGGTFLVFSDYSRNAIRXSALXKQ-PVVHVXSH 462
Query: 502 -SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP---VCFR 557
S GL G DGPT + + +PN+ V P+D E D P V R
Sbjct: 463 DSIGL-GEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTR 521
Query: 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGI 614
+V+T + I +G LV+ + ++ G+ V+ +K K GI
Sbjct: 522 QNLXPVVQT-----QHQVANIARGGYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGI 576
Query: 615 DVTVA 619
+ VA
Sbjct: 577 KLNVA 581
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,260,787
Number of Sequences: 62578
Number of extensions: 813622
Number of successful extensions: 2075
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2020
Number of HSP's gapped (non-prelim): 48
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)