Query 004968
Match_columns 721
No_of_seqs 397 out of 2976
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 15:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 4E-158 8E-163 1292.3 61.3 617 79-713 2-625 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 2E-151 5E-156 1290.6 68.9 697 1-721 1-701 (701)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 3E-138 7E-143 1193.4 71.0 654 66-721 18-677 (677)
4 PLN02234 1-deoxy-D-xylulose-5- 100.0 6E-132 1E-136 1131.4 61.8 607 41-687 22-639 (641)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2E-126 4E-131 1100.4 67.8 611 82-710 1-616 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 5E-125 1E-129 1091.2 67.7 625 76-715 3-632 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 8E-121 2E-125 1047.8 61.6 574 81-710 2-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 3E-111 5E-116 973.4 60.5 573 76-710 1-580 (580)
9 KOG0523 Transketolase [Carbohy 100.0 7.1E-98 2E-102 811.9 40.8 601 79-717 2-632 (632)
10 PTZ00089 transketolase; Provis 100.0 1E-94 2.2E-99 841.8 54.7 536 97-711 4-659 (661)
11 PLN02790 transketolase 100.0 4.8E-94 1E-98 835.4 55.6 531 106-710 1-654 (654)
12 PRK12753 transketolase; Review 100.0 2.5E-93 5.5E-98 828.6 54.9 538 99-710 4-663 (663)
13 PRK05899 transketolase; Review 100.0 5E-92 1.1E-96 819.8 57.4 541 94-710 3-624 (624)
14 TIGR00232 tktlase_bact transke 100.0 3.8E-88 8.3E-93 785.8 54.2 536 101-710 2-653 (653)
15 PRK12754 transketolase; Review 100.0 4.4E-87 9.6E-92 771.3 55.1 540 99-710 4-663 (663)
16 COG0021 TktA Transketolase [Ca 100.0 5.4E-79 1.2E-83 672.1 47.4 541 96-710 3-662 (663)
17 TIGR03186 AKGDH_not_PDH alpha- 100.0 3.3E-78 7.3E-83 702.6 55.9 589 97-712 73-860 (889)
18 PRK09405 aceE pyruvate dehydro 100.0 9.3E-77 2E-81 690.7 57.7 549 99-711 81-862 (891)
19 PRK13012 2-oxoacid dehydrogena 100.0 5.6E-75 1.2E-79 678.8 56.5 548 99-712 89-868 (896)
20 PF13292 DXP_synthase_N: 1-deo 100.0 3.1E-77 6.8E-82 603.4 13.8 270 82-366 1-270 (270)
21 COG3958 Transketolase, C-termi 100.0 3.1E-69 6.8E-74 545.9 34.0 304 400-710 6-312 (312)
22 CHL00144 odpB pyruvate dehydro 100.0 4.7E-60 1E-64 508.5 35.8 307 400-714 3-327 (327)
23 PRK09212 pyruvate dehydrogenas 100.0 6.5E-59 1.4E-63 500.5 36.5 306 400-712 3-325 (327)
24 PLN02683 pyruvate dehydrogenas 100.0 8.1E-58 1.8E-62 495.7 36.3 308 400-713 26-353 (356)
25 PRK11892 pyruvate dehydrogenas 100.0 3.6E-57 7.8E-62 503.6 36.7 306 400-711 141-463 (464)
26 PTZ00182 3-methyl-2-oxobutanat 100.0 2.3E-56 4.9E-61 484.2 34.0 307 399-710 33-355 (355)
27 TIGR00759 aceE pyruvate dehydr 100.0 1.3E-53 2.9E-58 490.6 51.0 582 99-711 75-856 (885)
28 COG0022 AcoB Pyruvate/2-oxoglu 100.0 6.8E-53 1.5E-57 430.0 28.8 305 401-711 2-323 (324)
29 KOG0524 Pyruvate dehydrogenase 100.0 5.2E-44 1.1E-48 355.1 24.8 307 399-710 33-358 (359)
30 PRK05261 putative phosphoketol 100.0 8.9E-41 1.9E-45 385.7 49.4 515 117-710 48-741 (785)
31 PRK09404 sucA 2-oxoglutarate d 100.0 1E-40 2.2E-45 393.6 50.3 537 83-684 177-903 (924)
32 COG2609 AceE Pyruvate dehydrog 100.0 1.3E-38 2.8E-43 350.2 45.2 583 98-711 76-858 (887)
33 cd02007 TPP_DXS Thiamine pyrop 100.0 4.8E-41 1.1E-45 336.6 19.6 195 118-372 1-195 (195)
34 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 4.5E-38 9.8E-43 369.3 37.6 434 190-684 313-909 (929)
35 COG3959 Transketolase, N-termi 100.0 9.8E-39 2.1E-43 312.5 22.1 222 94-369 5-243 (243)
36 KOG0525 Branched chain alpha-k 100.0 7.1E-38 1.5E-42 306.9 15.9 304 399-710 39-360 (362)
37 PF00456 Transketolase_N: Tran 100.0 1.4E-37 3.1E-42 333.2 13.0 232 100-388 2-261 (332)
38 cd02017 TPP_E1_EcPDC_like Thia 100.0 2.5E-36 5.3E-41 324.0 21.7 230 100-386 5-334 (386)
39 cd02012 TPP_TK Thiamine pyroph 100.0 5.1E-36 1.1E-40 313.2 22.0 228 104-388 1-245 (255)
40 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.4E-35 5.2E-40 285.6 19.6 154 406-560 2-156 (156)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 1.1E-32 2.4E-37 268.9 17.3 153 405-560 1-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 1.7E-32 3.7E-37 271.5 11.6 164 400-564 2-176 (178)
43 smart00861 Transket_pyr Transk 100.0 7.6E-29 1.6E-33 243.2 18.3 159 402-561 1-167 (168)
44 COG1071 AcoA Pyruvate/2-oxoglu 99.9 1.9E-25 4.1E-30 238.1 18.5 228 93-376 23-270 (358)
45 CHL00149 odpA pyruvate dehydro 99.9 8.1E-24 1.8E-28 229.1 22.6 229 88-376 11-268 (341)
46 PLN02269 Pyruvate dehydrogenas 99.9 8.1E-24 1.8E-28 229.8 19.2 225 93-376 26-268 (362)
47 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 6.7E-23 1.4E-27 218.6 22.7 213 105-374 12-235 (293)
48 PLN02374 pyruvate dehydrogenas 99.9 1.2E-22 2.7E-27 224.7 23.4 224 93-376 82-334 (433)
49 TIGR03182 PDH_E1_alph_y pyruva 99.9 1.1E-22 2.3E-27 218.6 20.3 206 113-375 26-242 (315)
50 TIGR03181 PDH_E1_alph_x pyruva 99.9 6.3E-22 1.4E-26 214.8 23.1 224 91-376 18-255 (341)
51 PRK07119 2-ketoisovalerate fer 99.9 5E-21 1.1E-25 208.4 28.3 273 416-711 19-350 (352)
52 PF02780 Transketolase_C: Tran 99.9 8.1E-24 1.8E-28 197.2 3.8 123 579-702 1-124 (124)
53 PF00676 E1_dh: Dehydrogenase 99.9 1.3E-21 2.8E-26 208.8 19.6 205 115-376 20-234 (300)
54 TIGR03336 IOR_alpha indolepyru 99.9 1.5E-20 3.3E-25 218.6 26.3 280 405-709 9-335 (595)
55 PRK08659 2-oxoglutarate ferred 99.8 2.1E-19 4.7E-24 197.1 26.5 269 418-709 21-375 (376)
56 PRK09622 porA pyruvate flavodo 99.8 6.2E-19 1.3E-23 195.6 27.8 280 417-711 26-382 (407)
57 KOG0225 Pyruvate dehydrogenase 99.8 3E-20 6.5E-25 191.1 15.1 204 113-376 83-296 (394)
58 PRK09627 oorA 2-oxoglutarate-a 99.8 9.3E-19 2E-23 191.6 26.2 269 416-709 18-375 (375)
59 PRK08366 vorA 2-ketoisovalerat 99.8 9.9E-18 2.1E-22 184.3 27.0 238 416-657 18-330 (390)
60 COG3957 Phosphoketolase [Carbo 99.8 4.6E-17 1E-21 181.9 30.4 466 118-644 60-693 (793)
61 PRK08367 porA pyruvate ferredo 99.8 5.1E-17 1.1E-21 179.0 29.0 276 417-711 20-374 (394)
62 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 1.3E-17 2.8E-22 192.3 21.0 252 404-661 199-537 (562)
63 cd02016 TPP_E1_OGDC_like Thiam 99.7 1.6E-16 3.6E-21 164.6 14.7 203 119-376 13-255 (265)
64 cd02011 TPP_PK Thiamine pyroph 99.7 5.9E-16 1.3E-20 156.7 13.1 148 168-373 36-209 (227)
65 cd02013 TPP_Xsc_like Thiamine 99.7 5.9E-16 1.3E-20 155.7 12.7 132 190-371 51-183 (196)
66 cd02004 TPP_BZL_OCoD_HPCL Thia 99.6 1.9E-15 4.2E-20 148.7 13.9 126 190-366 46-171 (172)
67 cd00568 TPP_enzymes Thiamine p 99.6 3E-15 6.5E-20 146.1 14.1 157 140-366 11-168 (168)
68 cd02006 TPP_Gcl Thiamine pyrop 99.6 4.4E-15 9.5E-20 150.1 14.5 182 130-370 13-197 (202)
69 cd02003 TPP_IolD Thiamine pyro 99.6 4.8E-15 1E-19 150.2 13.9 173 140-370 13-187 (205)
70 cd02015 TPP_AHAS Thiamine pyro 99.6 3.8E-15 8.1E-20 148.6 12.5 130 190-370 48-177 (186)
71 cd02010 TPP_ALS Thiamine pyrop 99.6 5E-15 1.1E-19 146.6 13.3 157 141-368 14-171 (177)
72 KOG1182 Branched chain alpha-k 99.6 2.5E-15 5.5E-20 153.5 10.9 224 84-368 73-319 (432)
73 COG0028 IlvB Thiamine pyrophos 99.6 6.8E-15 1.5E-19 169.0 15.7 158 141-369 373-533 (550)
74 PRK06163 hypothetical protein; 99.6 1.6E-14 3.4E-19 145.6 15.1 123 190-373 55-179 (202)
75 cd02008 TPP_IOR_alpha Thiamine 99.6 8.8E-15 1.9E-19 145.0 11.6 127 190-366 49-176 (178)
76 cd03371 TPP_PpyrDC Thiamine py 99.6 2.3E-14 5.1E-19 143.1 14.3 122 189-371 45-167 (188)
77 cd02002 TPP_BFDC Thiamine pyro 99.6 2.8E-14 6E-19 141.2 14.6 162 141-366 16-178 (178)
78 cd02014 TPP_POX Thiamine pyrop 99.6 2.1E-14 4.6E-19 142.2 13.3 167 130-368 7-174 (178)
79 cd02001 TPP_ComE_PpyrDC Thiami 99.6 3.2E-14 6.8E-19 138.1 12.5 117 190-369 40-157 (157)
80 cd03372 TPP_ComE Thiamine pyro 99.5 6.3E-14 1.4E-18 139.0 13.3 120 190-372 40-160 (179)
81 cd02009 TPP_SHCHC_synthase Thi 99.5 9.3E-15 2E-19 144.4 7.2 126 190-366 49-174 (175)
82 TIGR03846 sulfopy_beta sulfopy 99.5 1.8E-13 4E-18 135.8 13.9 118 191-370 41-159 (181)
83 cd02005 TPP_PDC_IPDC Thiamine 99.5 9.4E-14 2E-18 138.3 10.9 124 190-368 48-175 (183)
84 PRK06154 hypothetical protein; 99.5 1.7E-13 3.7E-18 159.1 14.1 175 125-370 381-558 (565)
85 TIGR01504 glyox_carbo_lig glyo 99.5 2.2E-13 4.7E-18 159.0 13.7 185 125-368 369-556 (588)
86 cd03376 TPP_PFOR_porB_like Thi 99.5 1.2E-13 2.7E-18 142.6 10.2 140 191-367 61-200 (235)
87 PRK12270 kgd alpha-ketoglutara 99.5 2.8E-11 6E-16 140.5 30.2 431 192-684 619-1206(1228)
88 PRK06457 pyruvate dehydrogenas 99.5 3.6E-13 7.8E-18 156.1 15.0 126 190-368 394-520 (549)
89 PRK06965 acetolactate synthase 99.5 4E-13 8.8E-18 156.8 15.4 130 190-370 435-565 (587)
90 TIGR02418 acolac_catab acetola 99.5 4.5E-13 9.8E-18 155.0 15.2 172 126-369 360-532 (539)
91 PRK05858 hypothetical protein; 99.5 5.2E-13 1.1E-17 154.6 15.7 173 125-369 358-532 (542)
92 PRK08611 pyruvate oxidase; Pro 99.5 6.2E-13 1.4E-17 154.9 16.3 128 190-370 406-533 (576)
93 PRK07979 acetolactate synthase 99.5 4.6E-13 1E-17 156.0 14.9 175 125-368 372-549 (574)
94 TIGR02176 pyruv_ox_red pyruvat 99.5 7E-12 1.5E-16 154.8 25.7 251 444-711 53-380 (1165)
95 COG0674 PorA Pyruvate:ferredox 99.5 3E-11 6.5E-16 132.3 27.9 235 418-656 20-327 (365)
96 PRK07418 acetolactate synthase 99.5 6.7E-13 1.5E-17 155.8 15.6 175 125-370 387-562 (616)
97 PRK09124 pyruvate dehydrogenas 99.4 6.5E-13 1.4E-17 154.8 14.6 128 190-370 406-533 (574)
98 PF02775 TPP_enzyme_C: Thiamin 99.4 1.3E-13 2.7E-18 133.2 7.2 128 190-364 26-153 (153)
99 PRK08273 thiamine pyrophosphat 99.4 8.7E-13 1.9E-17 154.4 15.3 176 125-369 366-548 (597)
100 PRK09107 acetolactate synthase 99.4 6.5E-13 1.4E-17 155.2 14.2 172 127-368 382-555 (595)
101 PRK08979 acetolactate synthase 99.4 7.6E-13 1.6E-17 154.2 14.7 174 125-368 372-547 (572)
102 cd03375 TPP_OGFOR Thiamine pyr 99.4 6.3E-13 1.4E-17 133.4 12.0 134 192-367 51-184 (193)
103 TIGR02720 pyruv_oxi_spxB pyruv 99.4 9.2E-13 2E-17 153.5 15.1 173 125-369 359-534 (575)
104 TIGR03297 Ppyr-DeCO2ase phosph 99.4 3E-12 6.4E-17 139.9 17.9 167 125-371 172-340 (361)
105 PRK06546 pyruvate dehydrogenas 99.4 6.5E-13 1.4E-17 154.8 13.2 128 190-370 406-533 (578)
106 PRK12474 hypothetical protein; 99.4 9.6E-13 2.1E-17 151.5 14.4 175 125-366 341-518 (518)
107 PRK06112 acetolactate synthase 99.4 1.4E-12 3E-17 152.2 15.9 175 125-369 387-562 (578)
108 PRK11269 glyoxylate carboligas 99.4 9.8E-13 2.1E-17 153.8 14.6 186 125-369 370-558 (591)
109 PRK08527 acetolactate synthase 99.4 1E-12 2.3E-17 152.7 14.6 175 125-370 365-541 (563)
110 PRK06456 acetolactate synthase 99.4 1.5E-12 3.2E-17 151.8 15.8 174 125-369 372-547 (572)
111 PRK08322 acetolactate synthase 99.4 2E-12 4.3E-17 150.0 16.2 173 126-370 358-531 (547)
112 PRK08978 acetolactate synthase 99.4 1.2E-12 2.6E-17 151.8 14.3 175 125-370 352-528 (548)
113 PLN02470 acetolactate synthase 99.4 1.3E-12 2.8E-17 152.6 14.6 137 190-370 424-560 (585)
114 PRK06725 acetolactate synthase 99.4 1.4E-12 3.1E-17 151.7 14.8 174 125-369 373-547 (570)
115 PRK06882 acetolactate synthase 99.4 1.5E-12 3.2E-17 151.9 14.8 129 190-370 419-549 (574)
116 TIGR03457 sulphoacet_xsc sulfo 99.4 9.4E-13 2E-17 153.6 13.1 176 127-371 383-561 (579)
117 PRK07586 hypothetical protein; 99.4 1.4E-12 3E-17 150.1 14.3 175 125-366 337-514 (514)
118 PRK08155 acetolactate synthase 99.4 2E-12 4.2E-17 150.5 14.6 174 125-369 370-545 (564)
119 PRK07789 acetolactate synthase 99.4 1.8E-12 3.9E-17 152.1 14.4 180 125-369 398-578 (612)
120 PRK06466 acetolactate synthase 99.4 2.1E-12 4.5E-17 150.6 14.5 175 125-370 374-551 (574)
121 CHL00099 ilvB acetohydroxyacid 99.4 1.9E-12 4.1E-17 151.1 14.2 173 125-368 383-556 (585)
122 PRK08617 acetolactate synthase 99.4 2.3E-12 4.9E-17 149.7 14.6 128 190-370 412-539 (552)
123 PRK07710 acetolactate synthase 99.4 2.6E-12 5.7E-17 149.7 15.0 129 190-370 422-551 (571)
124 PRK06048 acetolactate synthase 99.4 2.1E-12 4.5E-17 150.2 14.0 173 125-369 366-540 (561)
125 PRK08199 thiamine pyrophosphat 99.4 3.8E-12 8.2E-17 147.9 16.0 173 125-369 367-540 (557)
126 TIGR00118 acolac_lg acetolacta 99.4 2.3E-12 4.9E-17 149.8 13.7 129 190-370 410-539 (558)
127 TIGR03254 oxalate_oxc oxalyl-C 99.4 7.2E-12 1.6E-16 145.5 17.2 125 190-369 415-540 (554)
128 PRK09259 putative oxalyl-CoA d 99.4 9.4E-12 2E-16 145.0 17.8 128 190-371 422-550 (569)
129 PRK07524 hypothetical protein; 99.4 2.1E-12 4.5E-17 149.4 11.8 128 190-370 405-532 (535)
130 PRK07064 hypothetical protein; 99.4 3.8E-12 8.2E-17 147.6 13.9 129 192-372 405-533 (544)
131 PRK08266 hypothetical protein; 99.4 3.5E-12 7.5E-17 147.8 13.5 128 191-370 401-528 (542)
132 PRK06276 acetolactate synthase 99.4 3.8E-12 8.3E-17 148.7 13.6 127 190-368 417-544 (586)
133 PRK07525 sulfoacetaldehyde ace 99.4 5.2E-12 1.1E-16 147.6 14.5 178 125-371 386-566 (588)
134 TIGR03393 indolpyr_decarb indo 99.3 2.5E-12 5.4E-17 148.9 10.3 123 190-368 402-528 (539)
135 COG4231 Indolepyruvate ferredo 99.3 1.2E-10 2.7E-15 130.7 23.2 247 443-712 58-355 (640)
136 PRK07282 acetolactate synthase 99.3 3.7E-12 8E-17 148.2 11.7 172 125-368 369-542 (566)
137 PRK07092 benzoylformate decarb 99.3 1.5E-11 3.2E-16 142.2 13.8 170 125-366 359-529 (530)
138 PRK11864 2-ketoisovalerate fer 99.3 1.2E-11 2.7E-16 130.7 11.7 147 190-374 67-216 (300)
139 cd06586 TPP_enzyme_PYR Pyrimid 99.3 3.6E-11 7.8E-16 115.6 13.5 126 433-560 25-154 (154)
140 cd02018 TPP_PFOR Thiamine pyro 99.3 1.5E-11 3.2E-16 127.4 10.6 141 190-367 62-203 (237)
141 PRK05778 2-oxoglutarate ferred 99.3 2.6E-11 5.6E-16 129.1 12.5 134 192-367 70-203 (301)
142 PLN02573 pyruvate decarboxylas 99.3 6.7E-12 1.5E-16 146.2 8.5 123 190-368 426-553 (578)
143 PRK11869 2-oxoacid ferredoxin 99.3 2.8E-11 6.1E-16 127.3 12.0 134 192-367 60-193 (280)
144 PRK09628 oorB 2-oxoglutarate-a 99.2 2.2E-11 4.7E-16 128.3 10.3 135 192-368 68-202 (277)
145 PRK07449 2-succinyl-5-enolpyru 99.2 4.3E-11 9.3E-16 139.5 13.9 128 190-368 423-550 (568)
146 TIGR03394 indol_phenyl_DC indo 99.2 3.2E-11 7E-16 139.3 10.7 122 191-369 402-523 (535)
147 PRK11866 2-oxoacid ferredoxin 99.2 2.9E-11 6.3E-16 127.3 8.5 133 192-367 59-192 (279)
148 PRK08327 acetolactate synthase 99.2 9E-11 1.9E-15 136.7 13.4 137 190-367 428-567 (569)
149 PRK11867 2-oxoglutarate ferred 99.2 8.5E-11 1.8E-15 124.6 11.7 133 192-367 69-202 (286)
150 KOG4166 Thiamine pyrophosphate 99.2 6.8E-11 1.5E-15 125.8 9.4 174 128-371 475-651 (675)
151 TIGR02177 PorB_KorB 2-oxoacid: 99.1 9.2E-11 2E-15 123.9 8.7 134 192-367 53-186 (287)
152 PRK11865 pyruvate ferredoxin o 99.1 4.5E-10 9.8E-15 119.0 12.8 154 189-375 66-221 (299)
153 PRK13030 2-oxoacid ferredoxin 99.1 8.7E-09 1.9E-13 125.9 23.2 297 401-712 20-396 (1159)
154 TIGR03336 IOR_alpha indolepyru 99.1 3.8E-10 8.1E-15 132.0 11.2 127 191-366 402-529 (595)
155 COG3961 Pyruvate decarboxylase 99.0 1.5E-09 3.2E-14 119.5 11.9 172 124-368 362-536 (557)
156 PRK09193 indolepyruvate ferred 99.0 4.2E-08 9.2E-13 119.6 25.1 291 401-712 28-404 (1165)
157 PF09364 XFP_N: XFP N-terminal 99.0 7.4E-09 1.6E-13 110.0 16.0 225 93-374 1-288 (379)
158 PLN02980 2-oxoglutarate decarb 98.9 2.8E-09 6.1E-14 137.1 11.6 129 191-369 758-891 (1655)
159 COG3962 Acetolactate synthase 98.9 2.7E-08 5.9E-13 107.6 14.9 183 122-368 392-576 (617)
160 PRK13029 2-oxoacid ferredoxin 98.8 1.1E-07 2.4E-12 115.8 20.3 252 443-710 85-416 (1186)
161 KOG0451 Predicted 2-oxoglutara 98.8 1.5E-07 3.3E-12 103.2 19.0 245 401-654 564-867 (913)
162 PF01855 POR_N: Pyruvate flavo 98.8 1.7E-08 3.6E-13 104.0 9.3 116 445-562 38-156 (230)
163 COG0567 SucA 2-oxoglutarate de 98.7 5.2E-07 1.1E-11 105.8 20.7 205 444-654 628-857 (906)
164 KOG1185 Thiamine pyrophosphate 98.6 6.6E-07 1.4E-11 97.8 14.7 134 191-370 429-563 (571)
165 KOG0450 2-oxoglutarate dehydro 98.6 3.5E-06 7.7E-11 94.9 19.1 239 413-654 661-963 (1017)
166 KOG1184 Thiamine pyrophosphate 98.4 2.3E-07 4.9E-12 102.1 5.3 58 191-254 414-472 (561)
167 COG4231 Indolepyruvate ferredo 98.3 1.1E-06 2.4E-11 99.4 7.3 126 191-366 427-553 (640)
168 COG3960 Glyoxylate carboligase 98.1 1.3E-05 2.8E-10 83.9 10.5 135 191-368 418-557 (592)
169 COG1013 PorB Pyruvate:ferredox 98.1 1.2E-05 2.6E-10 85.7 8.7 133 194-367 72-204 (294)
170 PF03894 XFP: D-xylulose 5-pho 97.8 0.00074 1.6E-08 65.7 14.9 144 405-548 2-178 (179)
171 KOG0523 Transketolase [Carbohy 97.7 0.00044 9.5E-09 78.1 14.5 59 324-388 200-258 (632)
172 COG1165 MenD 2-succinyl-6-hydr 97.7 0.00018 3.8E-09 81.0 11.0 212 82-369 336-548 (566)
173 cd07034 TPP_PYR_PFOR_IOR-alpha 97.7 0.0015 3.4E-08 63.2 16.1 114 442-559 41-159 (160)
174 TIGR03297 Ppyr-DeCO2ase phosph 97.4 0.0011 2.5E-08 72.9 12.2 125 438-564 21-156 (361)
175 cd03377 TPP_PFOR_PNO Thiamine 97.4 0.00035 7.5E-09 75.9 7.4 116 214-367 151-267 (365)
176 cd07035 TPP_PYR_POX_like Pyrim 97.3 0.0018 3.9E-08 62.4 11.1 114 443-559 35-154 (155)
177 PRK09193 indolepyruvate ferred 96.9 0.0022 4.8E-08 79.3 8.4 65 190-260 479-544 (1165)
178 PRK13030 2-oxoacid ferredoxin 96.9 0.0019 4.1E-08 80.1 7.5 64 191-260 467-531 (1159)
179 PF02776 TPP_enzyme_N: Thiamin 96.6 0.024 5.2E-07 55.8 12.0 125 435-562 32-163 (172)
180 TIGR03845 sulfopyru_alph sulfo 96.5 0.037 8E-07 53.8 12.0 110 449-561 40-155 (157)
181 PRK13029 2-oxoacid ferredoxin 96.3 0.0089 1.9E-07 74.0 7.9 62 192-259 495-557 (1186)
182 TIGR02176 pyruv_ox_red pyruvat 96.1 0.009 2E-07 75.1 6.8 115 215-367 952-1067(1165)
183 COG4032 Predicted thiamine-pyr 95.4 0.028 6.1E-07 52.6 5.5 110 450-560 49-163 (172)
184 cd07039 TPP_PYR_POX Pyrimidine 95.2 0.97 2.1E-05 44.2 16.0 115 444-561 40-159 (164)
185 PRK07586 hypothetical protein; 94.9 3.2 6.9E-05 48.1 21.8 201 444-647 41-271 (514)
186 cd02004 TPP_BZL_OCoD_HPCL Thia 94.9 0.17 3.6E-06 49.7 9.6 115 439-558 35-169 (172)
187 cd07037 TPP_PYR_MenD Pyrimidin 94.5 0.24 5.1E-06 48.5 9.5 113 444-559 37-161 (162)
188 TIGR03457 sulphoacet_xsc sulfo 94.5 1.1 2.3E-05 52.9 16.7 117 444-563 41-162 (579)
189 cd02001 TPP_ComE_PpyrDC Thiami 94.4 0.44 9.4E-06 46.3 11.2 143 406-558 3-152 (157)
190 PRK12474 hypothetical protein; 94.0 5.3 0.00012 46.4 21.0 201 444-647 45-275 (518)
191 TIGR02418 acolac_catab acetola 93.9 1.3 2.8E-05 51.7 15.6 116 444-562 38-159 (539)
192 cd07038 TPP_PYR_PDC_IPDC_like 93.6 0.82 1.8E-05 44.6 11.4 113 444-560 37-162 (162)
193 PRK06466 acetolactate synthase 93.2 1.6 3.4E-05 51.4 15.0 117 443-562 43-165 (574)
194 PRK08611 pyruvate oxidase; Pro 93.2 2 4.3E-05 50.6 15.8 116 444-562 45-165 (576)
195 PRK07710 acetolactate synthase 93.2 1.6 3.5E-05 51.2 15.1 116 442-562 53-176 (571)
196 PRK08527 acetolactate synthase 93.1 2.2 4.8E-05 50.1 16.0 116 444-562 43-164 (563)
197 PRK07979 acetolactate synthase 93.1 2.2 4.7E-05 50.2 16.0 115 444-563 44-166 (574)
198 TIGR00118 acolac_lg acetolacta 93.1 2.2 4.8E-05 50.0 16.0 116 444-562 41-162 (558)
199 PRK05858 hypothetical protein; 93.0 2.3 5.1E-05 49.6 16.0 118 442-562 42-165 (542)
200 PRK08155 acetolactate synthase 93.0 1.7 3.6E-05 51.1 14.9 117 443-562 52-174 (564)
201 PRK07282 acetolactate synthase 93.0 2.1 4.6E-05 50.3 15.5 114 444-562 50-171 (566)
202 PRK08266 hypothetical protein; 92.9 2.4 5.1E-05 49.5 15.8 117 443-562 44-169 (542)
203 cd02014 TPP_POX Thiamine pyrop 92.8 1.3 2.9E-05 43.6 11.8 120 436-558 35-170 (178)
204 TIGR02177 PorB_KorB 2-oxoacid: 92.8 1.7 3.7E-05 46.5 13.2 144 404-558 13-183 (287)
205 PRK07092 benzoylformate decarb 92.8 2.5 5.5E-05 49.1 15.9 117 443-562 49-172 (530)
206 PRK07525 sulfoacetaldehyde ace 92.8 0.87 1.9E-05 53.8 12.1 118 443-563 44-166 (588)
207 cd02010 TPP_ALS Thiamine pyrop 92.8 1.5 3.2E-05 43.3 12.0 117 440-559 36-168 (177)
208 COG0028 IlvB Thiamine pyrophos 92.7 2.7 5.9E-05 49.2 15.8 123 435-563 33-163 (550)
209 PRK11866 2-oxoacid ferredoxin 92.7 1.4 3E-05 46.9 12.4 148 403-558 18-189 (279)
210 cd03376 TPP_PFOR_porB_like Thi 92.6 2 4.2E-05 44.7 13.1 90 467-558 80-197 (235)
211 PRK07064 hypothetical protein; 92.6 2.9 6.3E-05 48.8 16.0 116 444-562 43-167 (544)
212 cd02015 TPP_AHAS Thiamine pyro 92.4 0.92 2E-05 45.1 10.0 115 440-558 38-171 (186)
213 PRK08199 thiamine pyrophosphat 92.4 2.5 5.3E-05 49.6 15.1 115 443-562 47-169 (557)
214 PRK06965 acetolactate synthase 92.3 3.8 8.3E-05 48.4 16.7 115 443-562 60-182 (587)
215 PRK07789 acetolactate synthase 92.3 3.3 7.1E-05 49.2 16.1 117 443-562 70-192 (612)
216 PRK07524 hypothetical protein; 92.3 3.4 7.4E-05 48.1 16.0 116 444-562 41-165 (535)
217 PRK09107 acetolactate synthase 92.3 3.1 6.7E-05 49.2 15.8 115 443-562 50-172 (595)
218 PRK06725 acetolactate synthase 92.2 3.7 8E-05 48.3 16.3 115 443-562 53-175 (570)
219 PRK11864 2-ketoisovalerate fer 92.2 0.85 1.8E-05 49.0 9.9 103 454-558 73-204 (300)
220 PRK08322 acetolactate synthase 92.0 3.5 7.7E-05 48.1 15.8 115 443-562 39-161 (547)
221 cd02009 TPP_SHCHC_synthase Thi 91.9 1.5 3.3E-05 43.1 10.7 115 440-558 39-172 (175)
222 PRK06457 pyruvate dehydrogenas 91.8 1 2.2E-05 52.7 10.9 117 443-562 40-161 (549)
223 TIGR03846 sulfopy_beta sulfopy 91.7 2.9 6.2E-05 41.6 12.5 144 405-559 2-154 (181)
224 PRK11865 pyruvate ferredoxin o 91.6 4.3 9.3E-05 43.7 14.4 104 453-558 72-208 (299)
225 PRK08273 thiamine pyrophosphat 91.5 3.6 7.8E-05 48.7 15.2 115 443-562 43-165 (597)
226 PLN02573 pyruvate decarboxylas 91.5 4 8.7E-05 48.1 15.5 115 444-562 56-183 (578)
227 PRK08617 acetolactate synthase 91.4 1.3 2.9E-05 51.7 11.4 115 443-562 43-165 (552)
228 PRK11269 glyoxylate carboligas 91.4 4.2 9.1E-05 48.1 15.6 116 444-562 44-166 (591)
229 PRK06163 hypothetical protein; 91.3 6.7 0.00015 39.7 14.9 116 440-559 48-171 (202)
230 PRK08978 acetolactate synthase 91.2 1.4 3E-05 51.5 11.4 115 443-562 39-161 (548)
231 cd02018 TPP_PFOR Thiamine pyro 91.2 7.2 0.00016 40.5 15.4 117 441-558 51-200 (237)
232 PRK08979 acetolactate synthase 91.2 5 0.00011 47.2 15.9 117 443-562 43-165 (572)
233 PRK06882 acetolactate synthase 91.2 4.6 0.0001 47.5 15.7 116 444-562 44-165 (574)
234 PLN02470 acetolactate synthase 90.9 5.1 0.00011 47.3 15.6 115 443-562 52-174 (585)
235 PRK09124 pyruvate dehydrogenas 90.7 5.6 0.00012 46.8 15.8 114 444-562 43-163 (574)
236 TIGR01504 glyox_carbo_lig glyo 90.7 7 0.00015 46.2 16.6 116 444-562 43-165 (588)
237 TIGR02720 pyruv_oxi_spxB pyruv 90.6 2.2 4.8E-05 50.2 12.2 117 443-562 39-160 (575)
238 PRK06112 acetolactate synthase 90.4 2.1 4.7E-05 50.3 12.0 117 443-562 50-172 (578)
239 cd02003 TPP_IolD Thiamine pyro 90.4 1.1 2.4E-05 45.4 8.3 115 440-558 36-181 (205)
240 PRK06276 acetolactate synthase 90.3 2.2 4.7E-05 50.4 11.9 116 444-562 40-161 (586)
241 PRK09628 oorB 2-oxoglutarate-a 90.0 7.6 0.00016 41.4 14.4 145 405-558 29-198 (277)
242 PRK07449 2-succinyl-5-enolpyru 90.0 4.6 9.9E-05 47.4 14.2 151 405-562 9-175 (568)
243 PRK11867 2-oxoglutarate ferred 89.6 4.7 0.0001 43.2 12.6 145 403-558 28-199 (286)
244 PF09363 XFP_C: XFP C-terminal 89.5 5.3 0.00011 40.3 11.9 115 588-710 35-162 (203)
245 PRK06546 pyruvate dehydrogenas 89.5 6.2 0.00013 46.5 14.8 114 444-562 43-163 (578)
246 PRK06456 acetolactate synthase 89.4 2.7 5.9E-05 49.4 11.7 114 444-562 45-166 (572)
247 cd02013 TPP_Xsc_like Thiamine 89.0 1.3 2.8E-05 44.5 7.5 117 439-559 40-177 (196)
248 PRK07418 acetolactate synthase 89.0 3.3 7.2E-05 49.2 12.1 117 443-562 61-183 (616)
249 PRK06048 acetolactate synthase 88.9 2.6 5.7E-05 49.4 11.1 115 443-562 46-168 (561)
250 cd02006 TPP_Gcl Thiamine pyrop 88.9 1.2 2.5E-05 45.0 7.1 120 437-558 42-191 (202)
251 TIGR03394 indol_phenyl_DC indo 88.7 8.7 0.00019 44.9 15.1 115 444-562 40-166 (535)
252 CHL00099 ilvB acetohydroxyacid 88.1 3.9 8.3E-05 48.3 11.8 114 444-562 53-174 (585)
253 cd03372 TPP_ComE Thiamine pyro 88.0 5.4 0.00012 39.5 11.1 110 441-558 34-152 (179)
254 TIGR03254 oxalate_oxc oxalyl-C 87.8 3.8 8.3E-05 48.0 11.4 116 444-562 42-165 (554)
255 TIGR00173 menD 2-succinyl-5-en 87.0 8.7 0.00019 43.5 13.4 115 444-562 40-167 (432)
256 cd02007 TPP_DXS Thiamine pyrop 86.5 5 0.00011 40.4 9.9 97 456-559 81-188 (195)
257 cd03375 TPP_OGFOR Thiamine pyr 85.8 8.9 0.00019 38.5 11.4 102 455-558 56-181 (193)
258 PRK11869 2-oxoacid ferredoxin 85.0 7.8 0.00017 41.3 10.9 149 402-558 18-190 (280)
259 cd03371 TPP_PpyrDC Thiamine py 84.7 20 0.00044 35.7 13.3 112 441-558 40-160 (188)
260 PRK09259 putative oxalyl-CoA d 84.6 5.7 0.00012 46.7 10.8 117 443-562 48-172 (569)
261 cd02012 TPP_TK Thiamine pyroph 84.4 6.8 0.00015 41.1 10.1 102 455-559 110-225 (255)
262 cd02002 TPP_BFDC Thiamine pyro 84.4 3.8 8.3E-05 40.1 7.9 115 440-558 38-176 (178)
263 cd00568 TPP_enzymes Thiamine p 84.2 4.1 9E-05 39.2 7.9 113 442-558 36-166 (168)
264 cd02008 TPP_IOR_alpha Thiamine 83.9 6.1 0.00013 39.0 9.1 100 456-558 57-174 (178)
265 cd07033 TPP_PYR_DXS_TK_like Py 83.9 5.8 0.00012 38.3 8.7 50 197-254 51-101 (156)
266 cd06586 TPP_enzyme_PYR Pyrimid 83.8 6.1 0.00013 37.3 8.8 51 196-254 46-97 (154)
267 cd01460 vWA_midasin VWA_Midasi 83.5 11 0.00025 39.8 11.3 64 190-253 133-205 (266)
268 PRK05778 2-oxoglutarate ferred 83.3 12 0.00026 40.4 11.6 102 455-558 75-200 (301)
269 COG1071 AcoA Pyruvate/2-oxoglu 83.0 6.6 0.00014 43.2 9.5 115 441-558 131-258 (358)
270 PRK08327 acetolactate synthase 82.5 7.7 0.00017 45.6 10.7 116 444-562 52-182 (569)
271 cd03027 GRX_DEP Glutaredoxin ( 81.7 5.1 0.00011 33.1 6.4 65 589-655 2-67 (73)
272 PF02775 TPP_enzyme_C: Thiamin 80.7 3.1 6.6E-05 39.8 5.4 113 440-557 16-152 (153)
273 cd03028 GRX_PICOT_like Glutare 80.4 5.8 0.00012 34.5 6.6 67 587-657 7-81 (90)
274 PRK06154 hypothetical protein; 80.0 13 0.00027 43.9 11.2 120 437-559 416-553 (565)
275 PLN02980 2-oxoglutarate decarb 79.3 16 0.00036 48.5 13.0 113 444-560 341-466 (1655)
276 cd02005 TPP_PDC_IPDC Thiamine 77.3 20 0.00043 35.6 10.2 117 440-558 38-171 (183)
277 PRK12315 1-deoxy-D-xylulose-5- 77.0 20 0.00044 42.3 11.8 109 445-558 109-240 (581)
278 TIGR00365 monothiol glutaredox 75.3 11 0.00023 33.5 6.8 70 587-657 11-85 (97)
279 TIGR03393 indolpyr_decarb indo 73.7 56 0.0012 38.1 14.3 114 444-563 41-168 (539)
280 cd07036 TPP_PYR_E1-PDHc-beta_l 73.4 25 0.00054 34.5 9.6 30 329-363 135-164 (167)
281 TIGR00204 dxs 1-deoxy-D-xylulo 73.3 17 0.00037 43.3 9.9 50 197-254 364-414 (617)
282 TIGR03181 PDH_E1_alph_x pyruva 73.0 12 0.00026 41.1 8.0 102 454-558 130-243 (341)
283 KOG1145 Mitochondrial translat 72.0 41 0.00088 39.0 11.7 46 207-253 219-264 (683)
284 PLN02790 transketolase 71.1 24 0.00051 42.4 10.5 77 480-559 153-236 (654)
285 PRK05444 1-deoxy-D-xylulose-5- 71.0 22 0.00048 42.0 10.2 101 455-559 122-240 (580)
286 cd03418 GRX_GRXb_1_3_like Glut 69.2 16 0.00034 29.9 6.2 65 590-656 2-68 (75)
287 PRK12571 1-deoxy-D-xylulose-5- 69.0 26 0.00056 41.9 10.2 58 189-254 364-423 (641)
288 KOG1185 Thiamine pyrophosphate 68.5 26 0.00056 39.9 9.1 121 435-557 413-556 (571)
289 TIGR00173 menD 2-succinyl-5-en 68.2 8.7 0.00019 43.5 5.8 17 190-206 415-431 (432)
290 TIGR02190 GlrX-dom Glutaredoxi 67.4 23 0.00051 29.7 7.0 72 586-661 6-78 (79)
291 cd07037 TPP_PYR_MenD Pyrimidin 67.2 35 0.00076 33.3 9.0 53 193-251 43-95 (162)
292 TIGR03845 sulfopyru_alph sulfo 66.8 49 0.0011 32.1 9.9 52 194-253 43-95 (157)
293 cd02000 TPP_E1_PDC_ADC_BCADC T 65.7 20 0.00044 38.3 7.8 89 468-558 127-225 (293)
294 PTZ00089 transketolase; Provis 64.6 41 0.0009 40.4 10.7 77 480-559 164-247 (661)
295 cd07035 TPP_PYR_POX_like Pyrim 64.6 50 0.0011 31.3 9.5 56 193-254 42-97 (155)
296 PLN02683 pyruvate dehydrogenas 63.3 44 0.00095 37.0 9.9 31 329-364 165-195 (356)
297 cd03029 GRX_hybridPRX5 Glutare 62.7 39 0.00084 27.6 7.3 69 589-661 2-71 (72)
298 PLN02582 1-deoxy-D-xylulose-5- 62.4 37 0.0008 40.8 9.7 59 189-255 401-461 (677)
299 PF02779 Transket_pyr: Transke 61.4 69 0.0015 31.5 10.1 34 329-365 138-171 (178)
300 PF00676 E1_dh: Dehydrogenase 60.3 20 0.00042 38.7 6.4 101 456-558 107-222 (300)
301 cd00860 ThrRS_anticodon ThrRS 59.8 42 0.00092 28.3 7.3 58 589-648 3-61 (91)
302 KOG0225 Pyruvate dehydrogenase 59.8 39 0.00084 36.7 8.1 89 466-558 185-284 (394)
303 PLN02234 1-deoxy-D-xylulose-5- 58.3 42 0.00091 40.1 9.1 58 189-254 402-461 (641)
304 CHL00149 odpA pyruvate dehydro 58.3 35 0.00075 37.6 8.0 90 467-558 157-256 (341)
305 PRK10638 glutaredoxin 3; Provi 57.6 39 0.00084 28.6 6.6 66 589-656 3-69 (83)
306 cd01481 vWA_collagen_alpha3-VI 56.5 30 0.00065 33.6 6.5 55 590-647 110-164 (165)
307 PRK12754 transketolase; Review 56.0 70 0.0015 38.5 10.5 77 480-559 162-244 (663)
308 PRK05899 transketolase; Review 55.3 78 0.0017 37.8 10.9 88 468-559 151-246 (624)
309 PF04273 DUF442: Putative phos 54.3 14 0.0003 33.7 3.4 42 324-366 52-95 (110)
310 TIGR02181 GRX_bact Glutaredoxi 54.2 32 0.0007 28.6 5.5 61 596-657 6-67 (79)
311 cd07034 TPP_PYR_PFOR_IOR-alpha 53.9 99 0.0021 29.5 9.6 51 195-253 51-101 (160)
312 KOG1184 Thiamine pyrophosphate 52.9 44 0.00095 38.3 7.6 130 429-562 26-171 (561)
313 PF03129 HGTP_anticodon: Antic 51.4 51 0.0011 28.3 6.5 57 589-647 1-61 (94)
314 cd01080 NAD_bind_m-THF_DH_Cycl 50.4 37 0.0008 33.4 5.9 53 586-646 43-95 (168)
315 cd03033 ArsC_15kD Arsenate Red 50.3 38 0.00081 31.0 5.6 47 590-638 2-48 (113)
316 COG3961 Pyruvate decarboxylase 48.7 94 0.002 35.9 9.4 135 419-562 20-171 (557)
317 COG1165 MenD 2-succinyl-6-hydr 47.4 1E+02 0.0022 35.9 9.4 152 401-559 8-173 (566)
318 cd00858 GlyRS_anticodon GlyRS 47.4 72 0.0016 29.2 7.1 58 588-648 27-87 (121)
319 TIGR02189 GlrX-like_plant Glut 47.1 89 0.0019 27.7 7.4 67 588-656 8-78 (99)
320 cd07039 TPP_PYR_POX Pyrimidine 46.8 99 0.0021 30.0 8.3 51 197-253 50-100 (164)
321 PF03960 ArsC: ArsC family; I 46.5 34 0.00073 30.9 4.7 40 598-638 5-44 (110)
322 TIGR00232 tktlase_bact transke 45.2 71 0.0015 38.4 8.4 51 197-254 408-458 (653)
323 TIGR03182 PDH_E1_alph_y pyruva 45.1 1.5E+02 0.0033 32.1 10.3 90 467-558 132-231 (315)
324 COG1393 ArsC Arsenate reductas 44.5 51 0.0011 30.4 5.6 48 590-639 3-50 (117)
325 PRK15473 cbiF cobalt-precorrin 44.2 1.4E+02 0.0031 31.2 9.6 61 630-693 155-217 (257)
326 PLN02269 Pyruvate dehydrogenas 42.6 1.1E+02 0.0024 33.9 8.8 74 482-558 178-256 (362)
327 PLN02374 pyruvate dehydrogenas 42.6 71 0.0015 36.4 7.4 90 467-558 223-322 (433)
328 cd00859 HisRS_anticodon HisRS 42.2 1E+02 0.0022 25.5 6.8 56 589-647 3-60 (91)
329 PF03358 FMN_red: NADPH-depend 41.8 55 0.0012 30.8 5.6 65 598-662 16-94 (152)
330 PRK11892 pyruvate dehydrogenas 41.8 1.1E+02 0.0024 35.1 9.0 49 197-253 201-259 (464)
331 cd02017 TPP_E1_EcPDC_like Thia 41.5 3.1E+02 0.0066 30.8 11.9 51 480-533 163-218 (386)
332 TIGR01465 cobM_cbiF precorrin- 41.3 1.3E+02 0.0028 30.6 8.7 62 629-693 145-208 (229)
333 PF00456 Transketolase_N: Tran 40.7 1.3E+02 0.0029 32.9 8.9 81 480-563 159-245 (332)
334 COG0426 FpaA Uncharacterized f 40.1 1.3E+02 0.0029 33.5 8.9 48 594-644 256-303 (388)
335 cd03035 ArsC_Yffb Arsenate Red 39.9 56 0.0012 29.4 5.0 42 597-639 7-48 (105)
336 PF10740 DUF2529: Protein of u 39.7 75 0.0016 31.3 6.1 119 536-659 24-157 (172)
337 PRK10853 putative reductase; P 39.2 44 0.00096 30.8 4.3 40 598-638 9-48 (118)
338 TIGR02194 GlrX_NrdH Glutaredox 39.2 77 0.0017 25.9 5.4 57 597-654 7-64 (72)
339 PRK07119 2-ketoisovalerate fer 38.8 46 0.001 36.7 5.1 47 197-251 60-106 (352)
340 cd00861 ProRS_anticodon_short 38.8 1.1E+02 0.0025 26.0 6.7 58 589-648 3-64 (94)
341 COG3958 Transketolase, C-termi 38.7 1.4E+02 0.003 32.1 8.3 60 189-255 52-113 (312)
342 PRK10329 glutaredoxin-like pro 38.7 84 0.0018 26.7 5.7 60 590-654 3-65 (81)
343 COG0680 HyaD Ni,Fe-hydrogenase 38.7 76 0.0016 31.0 6.0 56 588-647 2-64 (160)
344 cd00738 HGTP_anticodon HGTP an 38.6 1.2E+02 0.0026 25.6 6.8 57 589-647 3-63 (94)
345 PF02776 TPP_enzyme_N: Thiamin 38.4 96 0.0021 30.2 6.8 52 195-254 49-102 (172)
346 PF04430 DUF498: Protein of un 37.7 40 0.00087 30.5 3.7 54 586-643 52-106 (110)
347 CHL00144 odpB pyruvate dehydro 37.4 1.4E+02 0.003 32.6 8.5 30 329-363 142-171 (327)
348 cd05125 Mth938_2P1-like Mth938 37.4 48 0.001 30.5 4.1 38 585-622 52-90 (114)
349 PRK03767 NAD(P)H:quinone oxido 37.0 2E+02 0.0043 28.7 9.1 69 596-665 13-96 (200)
350 PRK12753 transketolase; Review 36.9 2.1E+02 0.0045 34.6 10.6 77 480-559 162-244 (663)
351 PRK11200 grxA glutaredoxin 1; 36.9 2.2E+02 0.0048 23.9 8.1 70 590-662 3-80 (85)
352 PLN02225 1-deoxy-D-xylulose-5- 36.6 2E+02 0.0044 34.7 10.2 58 189-254 426-485 (701)
353 TIGR00014 arsC arsenate reduct 36.1 57 0.0012 29.7 4.5 42 597-639 7-48 (114)
354 cd03034 ArsC_ArsC Arsenate Red 36.1 58 0.0013 29.6 4.5 42 597-639 7-48 (112)
355 TIGR01616 nitro_assoc nitrogen 35.5 73 0.0016 29.7 5.2 41 597-638 9-49 (126)
356 cd06063 H2MP_Cyano-H2up This g 35.5 1.3E+02 0.0028 28.7 7.0 55 590-648 1-61 (146)
357 cd06062 H2MP_MemB-H2up Endopep 35.0 1.3E+02 0.0028 28.6 7.0 54 590-647 1-61 (146)
358 PRK10824 glutaredoxin-4; Provi 34.8 1.2E+02 0.0027 27.8 6.4 69 587-656 14-87 (115)
359 PRK10026 arsenate reductase; P 34.1 92 0.002 29.8 5.6 42 597-639 10-51 (141)
360 cd07038 TPP_PYR_PDC_IPDC_like 34.0 1.9E+02 0.004 28.0 8.0 54 192-253 42-96 (162)
361 cd00248 Mth938-like Mth938-lik 32.4 57 0.0012 29.6 3.8 35 588-622 53-88 (109)
362 COG2241 CobL Precorrin-6B meth 32.4 2.7E+02 0.0058 28.5 9.0 92 588-690 95-190 (210)
363 PF01565 FAD_binding_4: FAD bi 32.4 3.5E+02 0.0076 24.8 9.4 76 529-606 3-81 (139)
364 COG0543 UbiB 2-polyprenylpheno 32.0 1.7E+02 0.0037 30.5 7.9 73 578-651 97-174 (252)
365 COG0075 Serine-pyruvate aminot 31.8 2E+02 0.0044 32.2 8.7 82 582-666 75-162 (383)
366 cd00115 LMWPc Substituted upda 30.6 1.4E+02 0.003 28.0 6.3 85 604-710 49-140 (141)
367 TIGR02691 arsC_pI258_fam arsen 30.6 1.2E+02 0.0025 28.4 5.7 87 603-707 41-127 (129)
368 cd02066 GRX_family Glutaredoxi 30.1 1.9E+02 0.0041 22.4 6.3 64 590-655 2-66 (72)
369 PTZ00062 glutaredoxin; Provisi 29.7 1.9E+02 0.004 29.5 7.4 73 587-666 112-193 (204)
370 COG0695 GrxC Glutaredoxin and 29.5 1.5E+02 0.0032 25.1 5.7 62 590-652 3-66 (80)
371 PRK10264 hydrogenase 1 maturat 28.8 2.4E+02 0.0052 28.4 7.9 56 588-647 4-66 (195)
372 PF13528 Glyco_trans_1_3: Glyc 28.5 4.4E+02 0.0096 27.7 10.6 105 588-707 192-315 (318)
373 cd06068 H2MP_like-1 Putative [ 27.8 1.9E+02 0.004 27.4 6.7 54 592-648 2-61 (144)
374 cd05212 NAD_bind_m-THF_DH_Cycl 27.7 1.2E+02 0.0026 28.9 5.2 54 586-647 27-80 (140)
375 cd05126 Mth938 Mth938 domain. 27.5 58 0.0013 30.0 3.0 56 584-643 55-112 (117)
376 PF00258 Flavodoxin_1: Flavodo 27.1 1.2E+02 0.0026 28.1 5.3 30 596-625 8-37 (143)
377 PRK13344 spxA transcriptional 26.4 1.5E+02 0.0032 27.9 5.6 41 597-638 8-48 (132)
378 PRK10466 hybD hydrogenase 2 ma 26.1 2.6E+02 0.0056 27.2 7.5 56 589-648 2-64 (164)
379 PF03853 YjeF_N: YjeF-related 25.9 1.5E+02 0.0032 29.0 5.8 42 590-631 29-70 (169)
380 cd03798 GT1_wlbH_like This fam 25.8 4.7E+02 0.01 27.0 10.2 76 624-714 264-346 (377)
381 cd05560 Xcc1710_like Xcc1710_l 25.7 1E+02 0.0022 28.0 4.2 36 587-622 52-88 (109)
382 cd03032 ArsC_Spx Arsenate Redu 25.4 1.6E+02 0.0035 26.7 5.5 41 597-638 8-48 (115)
383 cd02977 ArsC_family Arsenate R 25.3 1.4E+02 0.0031 26.3 5.1 41 597-638 7-47 (105)
384 PF00590 TP_methylase: Tetrapy 25.1 1.2E+02 0.0027 30.0 5.2 62 627-691 146-209 (210)
385 PHA03050 glutaredoxin; Provisi 25.0 3.1E+02 0.0068 24.7 7.3 69 587-657 12-87 (108)
386 PF00670 AdoHcyase_NAD: S-aden 24.9 85 0.0018 30.8 3.7 58 585-645 21-85 (162)
387 cd03036 ArsC_like Arsenate Red 24.8 1.1E+02 0.0024 27.6 4.4 41 597-638 7-47 (111)
388 cd00518 H2MP Hydrogenase speci 24.4 2.5E+02 0.0053 26.3 6.8 54 591-648 1-60 (139)
389 PRK11544 hycI hydrogenase 3 ma 24.4 3E+02 0.0065 26.5 7.5 57 589-647 2-63 (156)
390 cd06189 flavin_oxioreductase N 24.1 7.3E+02 0.016 24.8 10.8 113 587-703 98-220 (224)
391 COG3962 Acetolactate synthase 24.1 4.9E+02 0.011 30.0 9.7 155 401-561 7-189 (617)
392 TIGR00130 frhD coenzyme F420-r 24.1 2.2E+02 0.0047 27.3 6.5 58 588-648 3-70 (153)
393 COG4981 Enoyl reductase domain 23.6 2.3E+02 0.0049 33.0 7.2 76 282-372 112-191 (717)
394 TIGR02853 spore_dpaA dipicolin 23.6 1.9E+02 0.004 31.0 6.5 56 586-644 150-215 (287)
395 PRK13403 ketol-acid reductoiso 23.5 2E+02 0.0043 31.6 6.6 55 586-644 15-77 (335)
396 PTZ00182 3-methyl-2-oxobutanat 23.1 4.1E+02 0.0088 29.4 9.1 30 329-363 173-202 (355)
397 TIGR01617 arsC_related transcr 23.1 1.4E+02 0.0031 27.1 4.8 43 596-639 6-48 (117)
398 PRK14175 bifunctional 5,10-met 23.1 1.7E+02 0.0038 31.3 6.0 52 586-645 157-208 (286)
399 COG0655 WrbA Multimeric flavod 22.7 3E+02 0.0066 27.6 7.5 69 595-663 13-100 (207)
400 smart00861 Transket_pyr Transk 22.7 4.9E+02 0.011 24.9 8.8 38 197-242 61-98 (168)
401 PRK08366 vorA 2-ketoisovalerat 22.6 1.4E+02 0.0031 33.5 5.5 49 197-254 61-109 (390)
402 PF08859 DGC: DGC domain; Int 22.5 5.9E+02 0.013 23.1 9.8 50 598-649 12-61 (110)
403 PF11823 DUF3343: Protein of u 22.2 1.5E+02 0.0033 24.5 4.4 55 598-666 10-64 (73)
404 PRK08306 dipicolinate synthase 22.1 2.1E+02 0.0044 30.8 6.5 56 586-644 151-216 (296)
405 smart00226 LMWPc Low molecular 21.8 1.9E+02 0.0042 26.8 5.6 37 604-648 45-81 (140)
406 PRK12559 transcriptional regul 21.5 2.1E+02 0.0046 26.8 5.6 41 597-638 8-48 (131)
407 PF02254 TrkA_N: TrkA-N domain 21.5 2.5E+02 0.0054 24.8 6.0 30 590-622 1-30 (116)
408 PRK08105 flavodoxin; Provision 21.4 1.1E+02 0.0024 29.2 3.9 34 592-625 5-42 (149)
409 KOG2862 Alanine-glyoxylate ami 21.3 6.6E+02 0.014 27.5 9.7 125 582-712 87-228 (385)
410 TIGR00142 hycI hydrogenase mat 21.2 2.7E+02 0.0058 26.4 6.4 56 590-647 1-62 (146)
411 PF02882 THF_DHG_CYH_C: Tetrah 20.9 1.5E+02 0.0032 29.0 4.5 51 586-644 35-85 (160)
412 TIGR00072 hydrog_prot hydrogen 20.9 3.2E+02 0.007 25.8 6.9 53 592-648 2-61 (145)
413 PRK14194 bifunctional 5,10-met 20.3 1.8E+02 0.0039 31.5 5.4 53 586-646 158-210 (301)
414 TIGR00012 L29 ribosomal protei 20.2 1.1E+02 0.0023 24.3 2.8 25 90-114 1-25 (55)
415 COG1707 ACT domain-containing 20.1 5.5E+02 0.012 25.4 8.0 89 587-680 83-178 (218)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=3.8e-158 Score=1292.33 Aligned_cols=617 Identities=47% Similarity=0.752 Sum_probs=592.7
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHH
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (721)
+|+|++|++|+|||+|+.+||++||+|||+++++.++++|||++|+||+||||+|||||||+|.|+||||||||+|+|||
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHh
Q 004968 159 LTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (721)
Q Consensus 159 ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A 238 (721)
||||+++|.|+||++|++|||+|.||+||.|++||+||+||+|+|||.|++++|++++|||||||||++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc
Q 004968 239 G-YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (721)
Q Consensus 239 ~-~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (721)
+ ..+.|+|||+|||+|+ |++|+|+++++|+++++++.|+++|+..+.+++..|.++...++++++.+|+++
T Consensus 162 g~~~~~~~iVILNDNeMS--------Is~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 162 GADLKSNLIVILNDNEMS--------ISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred hhccCCCEEEEEeCCCcc--------cCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 9 5569999999999994 899999999999999999999999999999999888899999999999999988
Q ss_pred CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC---CCCC
Q 004968 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD---SNSL 394 (721)
Q Consensus 318 ~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f---~~g~ 394 (721)
.| .++||+|||+|+||+||||+++|+.+|+.+|+ .++|++|||+|.|||||+|||+ ++.+|||+.|| ++|+
T Consensus 234 ~~--~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~--d~~~~H~v~~f~~~~tg~ 307 (627)
T COG1154 234 VP--GTLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEE--DPIKYHGVGPFDPIETGQ 307 (627)
T ss_pred Cc--hhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhc--ChhhccCCCCCCccccCc
Confidence 77 48999999999999999999999999999999 4899999999999999999999 89999999998 5677
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEE
Q 004968 395 PFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCI 472 (721)
Q Consensus 395 ~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ 472 (721)
+.+ ++.++|+++|+++|++++++|++||+|||+|.+++||..|.++||+|||||||||||+|++|+|||.+|+||||+
T Consensus 308 ~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 308 SKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 655 566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCC
Q 004968 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~ 552 (721)
+||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+++||||+|++|+|++|+..|+.+|+..+++
T Consensus 388 IYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~g 467 (627)
T COG1154 388 IYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG 467 (627)
T ss_pred EecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHH
Q 004968 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 632 (721)
Q Consensus 553 P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i 632 (721)
|+.|||||+++....... ...++++||++++++|.|++|+++|.++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 468 P~AiRyPrg~~~~~~~~~-~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 468 PVAIRYPRGNGVGVILTP-ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred CeEEEecCCCCCCCCccc-ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 999999999876543222 2467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 633 RELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 633 ~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
++++++++.+||+|||. .||||+.|++++...++ .++++++|+||.|++||+++++++.+|||++.|+++|.+++.
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999998 79999999999999987 478999999999999999999999999999999999999886
Q ss_pred cc
Q 004968 712 RT 713 (721)
Q Consensus 712 ~~ 713 (721)
..
T Consensus 624 ~~ 625 (627)
T COG1154 624 AR 625 (627)
T ss_pred hc
Confidence 53
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.2e-151 Score=1290.56 Aligned_cols=697 Identities=71% Similarity=1.109 Sum_probs=623.6
Q ss_pred CCCCCCCCcccccccccccccccchhhhhhccccccccccc-ccccCCCCCCcccCcceeeccc-ccCCCCCcccCCCCC
Q 004968 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEIS-RINLCPSSSSITSSKLVTVSRI-CALPDIDDFFWDKEP 78 (721)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (721)
|-|.++.||.- +++|.-|... -|.|.++|+....+..+ |.+.+.+.+ .+...++-.+- ...++.++|++++++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (701)
T PLN02225 1 MGSASIGYQFG--ISARFYGNFN-LSSDITVSSLPCKLDVSIKSLFSAPSS--THKECSNRARVCCSLPNTDEYCDEKFE 75 (701)
T ss_pred CCccccccccc--ceeeeeeecC-cchhhhhhhcccccccchhhccccccc--cccccccccccccCCCccccccCCCCC
Confidence 56778899875 5889888775 46788898888877665 444444433 22223221111 124455589899988
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhH-hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHH
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV-SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHK 157 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~-~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~ 157 (721)
+|+|++||+|.|||+|+.+||++||+|||++|++.+ +++|||++||||+||||+|||||||.|+|+||||||||+|+||
T Consensus 76 ~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HK 155 (701)
T PLN02225 76 TPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHK 155 (701)
T ss_pred CchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH
Q 004968 158 ILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 158 ~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
|||||+++|.+ ||++|++|||+|.||+||.|++||+||+||+|+|||.|+++++++++||+|||||+|++||+|||||+
T Consensus 156 iLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~ 234 (701)
T PLN02225 156 VLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSN 234 (701)
T ss_pred HhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhh
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc
Q 004968 238 AGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (721)
Q Consensus 238 A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (721)
|+..+.|+|||+|||+|+..|++..+...++|+++++|+++++++.|+++|+..+.+++.++..+..+.+++++++|+++
T Consensus 235 ~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 314 (701)
T PLN02225 235 AGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMV 314 (701)
T ss_pred hhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999522222222223399999999999999999999999999999998778888899999999998
Q ss_pred CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCCCCCCCCC
Q 004968 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFG 397 (721)
Q Consensus 318 ~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f~~g~~~~ 397 (721)
.+.+.++||+|||+|+||+||||+++|+++|+++|+.+.++|+||||+|+||+.. +||+..+
T Consensus 315 ~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~------------------~tg~~~~ 376 (701)
T PLN02225 315 GPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDA------------------ETGKNIM 376 (701)
T ss_pred CCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCC------------------CCCCcCC
Confidence 7644589999999999999999999999999999986335999999999999831 2333222
Q ss_pred -CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHh
Q 004968 398 -NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA 476 (721)
Q Consensus 398 -~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~ 476 (721)
...++|+++|+++|.+++++|++|+++++||+.+++++.|+++||+||||+||||||||++|+|||++|++||+++|++
T Consensus 377 ~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iyst 456 (701)
T PLN02225 377 VKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSA 456 (701)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehh
Confidence 2357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEE
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF 556 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~i 556 (721)
|+|||||||+||+|++++||+|+++++|++|+||+|||+.+|+++||++|||+|++|+|+.|++.|+++|+...++|++|
T Consensus 457 FlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~I 536 (701)
T PLN02225 457 FLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCF 536 (701)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998666799999
Q ss_pred EecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh
Q 004968 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 557 r~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
|+||+..+..+.+..+++++++||++++++|+|++||++|+|++.|++|++.|+++||+++|||+|||||||+++|.+++
T Consensus 537 R~pRg~~~~~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~ 616 (701)
T PLN02225 537 RFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLC 616 (701)
T ss_pred EecccccCCCCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHH
Confidence 99998754322101123678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcchhh
Q 004968 637 QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716 (721)
Q Consensus 637 ~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 716 (721)
++++.|||||||..||||++|++++.++++.+.+.+++++|+||+|+++|+++++++++|||+++|+++|+++++..+++
T Consensus 617 ~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~~~~~~ 696 (701)
T PLN02225 617 QNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTREA 696 (701)
T ss_pred hhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHhhcccc
Confidence 99999999999988999999999999987533346899999999999999999999999999999999999999888888
Q ss_pred hhccC
Q 004968 717 LLLMC 721 (721)
Q Consensus 717 ~~~~~ 721 (721)
|.+|+
T Consensus 697 ~~~~~ 701 (701)
T PLN02225 697 LLLMS 701 (701)
T ss_pred eEecC
Confidence 88874
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3e-138 Score=1193.40 Aligned_cols=654 Identities=61% Similarity=1.005 Sum_probs=605.4
Q ss_pred CCCCCcccCCCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEE
Q 004968 66 LPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKI 145 (721)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~i 145 (721)
+.+..+|....+.+|+|++|++|.|||+|+.++|+++|++||+++++++++++||++++||+||+++|||++|+.|+|+|
T Consensus 18 ~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~ 97 (677)
T PLN02582 18 PEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKI 97 (677)
T ss_pred ccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeE
Confidence 34444554444568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCC
Q 004968 146 LWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT 225 (721)
Q Consensus 146 v~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGa 225 (721)
|||+|||+|+||++|||+++|.++|++|+++|||++.++++|.|++||+|+++|+|+|+|+|+++++++++|||++|||+
T Consensus 98 i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~ 177 (677)
T PLN02582 98 LWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGA 177 (677)
T ss_pred EEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHH
Q 004968 226 TMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHE 304 (721)
Q Consensus 226 l~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 304 (721)
+++|++|||||+|+.+++|+++|||||+++|+|+.. +++++++|+++++|++++.++.|+++|+..+.+++.++..+..
T Consensus 178 ~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (677)
T PLN02582 178 MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHE 257 (677)
T ss_pred cchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHH
Confidence 999999999999999999999999999998898875 8999999999999999999999999999999999988766677
Q ss_pred HHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccc
Q 004968 305 WAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQ 384 (721)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~ 384 (721)
..+++++..+.++.|.+..+||+|||+|++++||||+++|.++|+++|+.+.++|++||++|.|||||++||+ ++.+|
T Consensus 258 ~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~--~~~~~ 335 (677)
T PLN02582 258 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAER--AADKY 335 (677)
T ss_pred HHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhc--Chhhc
Confidence 7788999999988764447999999999999999999999999999998522689999999999999999998 78899
Q ss_pred cccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHH
Q 004968 385 QEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSA 460 (721)
Q Consensus 385 Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~Aa 460 (721)
||+.+| ++|++.+ ...++|+++|+++|.+++++||+|+++++||++++++..|+++||+||||+||||||||++|+
T Consensus 336 H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~Aa 415 (677)
T PLN02582 336 HGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAA 415 (677)
T ss_pred CCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHH
Confidence 999999 7776643 235689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHH
Q 004968 461 GLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540 (721)
Q Consensus 461 GlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~ 540 (721)
|||+.|++||+++|++|++||||||+|++|++++||+|+++++|++|.||+|||+.+|++++|++||++|++|+|+.|++
T Consensus 416 GLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~ 495 (677)
T PLN02582 416 GLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELF 495 (677)
T ss_pred HHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEe
Q 004968 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619 (721)
Q Consensus 541 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 619 (721)
.++++|+...++|++||+||+......++.. ..+.+++||++++++|+|++||++|++++.|++|++.|+++||+++||
T Consensus 496 ~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI 575 (677)
T PLN02582 496 HMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA 575 (677)
T ss_pred HHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999998766799999999987433223321 124678999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 620 DARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 620 d~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
|++|++|||++++.+++++++.|||+||+..||||++|++++.+++....+.+++++|+||+|+++|+++++++++|||+
T Consensus 576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~ 655 (677)
T PLN02582 576 DARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTP 655 (677)
T ss_pred EcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCH
Confidence 99999999999999999999999999999889999999999999875322468999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhhccC
Q 004968 700 HHIAATALSLLGRTREALLLMC 721 (721)
Q Consensus 700 ~~I~~~i~~~l~~~~~~~~~~~ 721 (721)
+.|+++|+++++.++..+++|+
T Consensus 656 e~I~~~i~~~l~~~~~~~~~~~ 677 (677)
T PLN02582 656 SHIAATVLNVLGQTREALQIMS 677 (677)
T ss_pred HHHHHHHHHHHhcccccccccC
Confidence 9999999999966566777764
No 4
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.3e-132 Score=1131.42 Aligned_cols=607 Identities=56% Similarity=0.940 Sum_probs=553.6
Q ss_pred cccccCCCC-----CCcccCcceeecccccCCCCCcccCCCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHh
Q 004968 41 SRINLCPSS-----SSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVS 115 (721)
Q Consensus 41 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~ 115 (721)
+-||-||+- |+-.|.|--+| |.++.++.++|++++|++|+|++||+|.|||+|+.+||++||+|+|++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~ 100 (641)
T PLN02234 22 SYINRNPSLKYLKPSSMSSTKYSKV-RATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVS 100 (641)
T ss_pred hhhccCCccceecccccccccccee-EEEccCCcccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 455666541 22233334444 777767777999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCc
Q 004968 116 KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGC 195 (721)
Q Consensus 116 ~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G 195 (721)
+++||+++|||+|||++|||++|+.|+|+||||+|||+|+||++|||+++|.++||.++++|||++.|++||.|++||+|
T Consensus 101 ~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg 180 (641)
T PLN02234 101 KTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSS 180 (641)
T ss_pred hcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCCcchhhhhhh
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSST 274 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~ 274 (721)
+|||+|+|||+|+++++.+++|||++|||++++|++|||||+|++.+.|||+|+|||+++|+||.+ +++.+++|+++++
T Consensus 181 ~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~ 260 (641)
T PLN02234 181 TTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCA 260 (641)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHH
Confidence 999999999999999999999999999999999999999999998889999999999998899866 7899999999999
Q ss_pred hhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc
Q 004968 275 LSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL 354 (721)
Q Consensus 275 l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~ 354 (721)
|+++++++.|.+ ....++||+|||+|+|++||||+++|.++|+++++.
T Consensus 261 l~~l~~~~~~~~--------------------------------~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~ 308 (641)
T PLN02234 261 LSRLQSNCGMIR--------------------------------ETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST 308 (641)
T ss_pred HHHhhccccccc--------------------------------CCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc
Confidence 999998876621 011468999999999999999999999999999875
Q ss_pred CCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 004968 355 GSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM 430 (721)
Q Consensus 355 ~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~ 430 (721)
+.++|++||++|+||+||+++|+ .+.+||++.+| ++|++.+ ....+|+++|+++|.+++++||+|+++++||++
T Consensus 309 ~~~~P~vI~~~T~KGkGv~~~E~--~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g 386 (641)
T PLN02234 309 KTIGPVLIHVVTEKGRGYPYAER--ADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGG 386 (641)
T ss_pred CCCCCEEEEEEEecCCCcchhhc--CCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCC
Confidence 33589999999999999999997 67899999999 7787765 334799999999999999999999999999999
Q ss_pred ccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC
Q 004968 431 DLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG 510 (721)
Q Consensus 431 ~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG 510 (721)
+++++.|+++||+||||+|||||+||++|+|||++|+|||+++|++|++||||||+|++|++++||+|+++++|++|.||
T Consensus 387 gt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG 466 (641)
T PLN02234 387 GTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADG 466 (641)
T ss_pred CcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCC-CCCcceecCceEEEEeCCc
Q 004968 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPG-YRGIPIEIGKGKVLVEGKD 589 (721)
Q Consensus 511 ~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~-~~~~~~~~gk~~vl~eG~d 589 (721)
+|||+.+|++++|++|||+|++|+|+.|++.++++|+..+++|++||++|+......+|. .+.+++++||++++++|+|
T Consensus 467 ~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~d 546 (641)
T PLN02234 467 PTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGER 546 (641)
T ss_pred ccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCC
Confidence 999999999999999999999999999999999998876779999999998764333332 2235678999999999999
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDS 669 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~ 669 (721)
++||+||++++.|++|+++|+++||+++|||+|||+|||++++++++++++.|||+||+..||||++|++++.+++++|.
T Consensus 547 vtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~ 626 (641)
T PLN02234 547 VALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDG 626 (641)
T ss_pred EEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999998877
Q ss_pred CCceEEEecCCccccCCC
Q 004968 670 GVKWRPIVLPDNYIEHAS 687 (721)
Q Consensus 670 ~~~~~~~g~~d~f~~~g~ 687 (721)
+.++.+ .|+..|+
T Consensus 627 ~~~~~~-----~~~~~~~ 639 (641)
T PLN02234 627 KLKVYR-----TWITNGS 639 (641)
T ss_pred CceEEE-----EEeecCc
Confidence 777664 4555443
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.8e-126 Score=1100.43 Aligned_cols=611 Identities=44% Similarity=0.693 Sum_probs=570.7
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
|++|++|+|||+|+.+||+++|.+||+++++++++++||++++||+||+++|||++|+.|+|+||||+|||+|+|+++||
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc
Q 004968 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (721)
Q Consensus 162 r~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~ 241 (721)
|.++|.++|++|+++|||++.||++|.|++||+|+++|+|+|+|+|.++++++.+|+|++|||++++|++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCc
Q 004968 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (721)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (721)
++|+++|||||+++ ++++++.++.+|++++.++.|..++...+.+.+..+.....+.+++++.+|.++.+
T Consensus 161 ~l~~i~ii~~N~~~--------i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-- 230 (617)
T TIGR00204 161 KTDMIVILNDNEMS--------ISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP-- 230 (617)
T ss_pred CCCEEEEEECCCcc--------cCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--
Confidence 99999999999984 67789999999999999999999999988888766532333778889999998877
Q ss_pred cceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC--
Q 004968 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG-- 397 (721)
Q Consensus 322 ~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~-- 397 (721)
.++||+|||+|++++||||+++|.++|+++++ .++|++||++|.||+||+++|+ ++.+||++.+| ++|....
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~--~~~~~H~~~~~~~~~~~~~~~~ 306 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEK--DPIGWHGVGPFDLSTGCLPKSK 306 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhc--ChhhccCCCCCChhhCCcCCCC
Confidence 58999999999999999999999999999997 4789999999999999999997 67789999988 5554432
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 398 ~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
....+|+++|+++|.+++++|++|+++++||.+++++++|+++||+||||+|||||+||++|+|||++|++||+++|++|
T Consensus 307 ~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~F 386 (617)
T TIGR00204 307 SALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTF 386 (617)
T ss_pred CCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHH
Confidence 23468999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
++|+||||+|++|++++||+++++++|++|.||+|||+.+|+++|+++|||+|++|+|+.|++.++++|++..++|+|||
T Consensus 387 l~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir 466 (617)
T TIGR00204 387 LQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVR 466 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987556999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
++|+.......+. +.+.+++||++++++|+|++||+||.|++.|++|++.|+++||+++|||++||+|||++++.++++
T Consensus 467 ~~r~~~~~~~~~~-~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 467 YPRGNAVGVELTP-EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred EccCCcCCcccCC-ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 9998753322221 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 638 NHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 638 ~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++++||||||+. .||||++|++++.++++ +.+++++|+||.|+++|+++++++++|||+++|+++|++++
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 999999999998 79999999999999873 46899999999999999999999999999999999999875
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.3e-125 Score=1091.20 Aligned_cols=625 Identities=50% Similarity=0.780 Sum_probs=581.9
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
.|.+++|++|++|.|||+|+.++|+++|++||.++++++++.+||+|++||+||++++||++|+.|+|+||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
|++|+||.++|.++|++++++|||++.|+++|.++.||.+++++.|+|+|+|.++.+++++|||++|||++++|++||++
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
++|+.+++|+++|+|||+++ +++++++++++|+++..++.|+++|+..+.+++.++.++....+++++.++.
T Consensus 163 ~~a~~~~~~li~I~dnN~~~--------i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMS--------IAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred HHHHHhCCCEEEEEECCCee--------ecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 99999999999999999985 6778999999999999999999999999999999988888888999999999
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCC
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNS 393 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g 393 (721)
++.+ ..+||+|||+|+++|||||+++|.++|+++++. .++|++||++|+||+||+++|+ ++.+|||.++| .++
T Consensus 235 ~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~--~~~~~Hg~~~f~~~~~ 309 (641)
T PRK12571 235 MIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEA--DEDKYHAVGKFDVVTG 309 (641)
T ss_pred ccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhc--CCCcccCCCCcCCCCC
Confidence 8765 579999999999999999999999999999873 3789999999999999999997 67899999999 556
Q ss_pred CCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEE
Q 004968 394 LPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC 471 (721)
Q Consensus 394 ~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~ 471 (721)
++.+ ...++|+++|+++|.+++++||+|+++++||.+++++..|+++||+||||+||+||+|+++|+|||+.|++||+
T Consensus 310 ~~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v 389 (641)
T PRK12571 310 LQKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFC 389 (641)
T ss_pred cccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEE
Confidence 5433 23468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC
Q 004968 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (721)
Q Consensus 472 ~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~ 551 (721)
++|++|++||+|||++++|++++||+++++++|++|+||+|||+.+|+++||++||++|++|+|+.|++.++++|++..+
T Consensus 390 ~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 469 (641)
T PRK12571 390 AVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDD 469 (641)
T ss_pred EehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999987558
Q ss_pred CCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 552 RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 552 ~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
+|+|||++|+......+|.. .+.+++||+.++++|+|++||+||+++..|++|++.|+++||+++|||+++|+|||+++
T Consensus 470 ~P~~ir~~r~~~~~~~~~~~-~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 470 GPIAVRFPRGEGVGVEIPAE-GTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred CcEEEEEecCcCCccccCCC-CccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 99999999987543333322 35678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 632 VRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 632 i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+.++.+++ .++|+||+. .||||++|++++.++++.+.+.+++++|+||.|+++|+.+++++++|||+++|+++|++++
T Consensus 549 i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 549 TDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred HHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 98888776 566677765 7999999999999998754467899999999999999999999999999999999999999
Q ss_pred hcchh
Q 004968 711 GRTRE 715 (721)
Q Consensus 711 ~~~~~ 715 (721)
+..++
T Consensus 628 ~~~~~ 632 (641)
T PRK12571 628 ARLSG 632 (641)
T ss_pred HhccC
Confidence 76554
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=8.3e-121 Score=1047.80 Aligned_cols=574 Identities=31% Similarity=0.517 Sum_probs=528.0
Q ss_pred ccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHh
Q 004968 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (721)
Q Consensus 81 ~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (721)
||++|++|.|||+|+.+||++||+|||.++++.+++++||++|++|+||+++|||++||.|+|+||||+|||+|+|+++|
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 161 GRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 161 Gr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
||+.++.+.|++|+++||+++.||+||.|++||+|+++|+|+|+|+|+++++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
|++|+|+||+||+|+ +++++++++.++.+++.++. .+
T Consensus 162 ~k~~li~Ii~dN~~s--------i~~~~~~~~~~l~~~~~~~~-----------------------------------~~ 198 (581)
T PRK12315 162 LKSNLIIIVNDNQMS--------IAENHGGLYKNLKELRDTNG-----------------------------------QS 198 (581)
T ss_pred hCCCEEEEEECCCCc--------CCCCCchhhhhhhhhhhccc-----------------------------------cc
Confidence 999999999999984 56778877666654332110 01
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC-
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG- 397 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~- 397 (721)
...+|++|||++++++||||++++.++++++++ .++|++||++|.||+||+++++ ++.+||+..+| .+|+..+
T Consensus 199 ~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~--~~~~~h~~~~f~~~~~~~~~~ 274 (581)
T PRK12315 199 ENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEE--NKEAFHWHMPFDLETGQSKVP 274 (581)
T ss_pred HHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhc--CHHhcCCCCCCCcccCcccCC
Confidence 135789999999988899999999999999987 5899999999999999988766 68899999888 5554333
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 398 ~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
....+|+++|+++|.+++++|++|+++++||+++++++.|+++||+||||+|||||+|+++|+|||++|++||+.+|++|
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 275 ASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
++||||||+|++|++++||+|+++++|+++ ||+|||+++|+++||++||++|++|+|+.|++.++++|++..++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999987557999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHHHHHh
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
++|+...... .. ...+..+|++++++|+|++||++|++++.|++|++.|+++ ||+++|||++|++|||++++.++.
T Consensus 434 ~~r~~~~~~~--~~-~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~ 510 (581)
T PRK12315 434 VPEHGVESGP--TV-DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLK 510 (581)
T ss_pred EcCCccCCCC--CC-ccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHH
Confidence 9998754321 11 1234456899999999999999999999999999999998 999999999999999999999999
Q ss_pred ccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 637 QNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 637 ~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++++.|||+||+. .||||++|++++.+++ .+++++|+||+|+++|+++++++++|||+++|+++|++++
T Consensus 511 ~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 511 EDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred hhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 9999999999998 6999999999998764 4789999999999999999999999999999999999875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.5e-111 Score=973.39 Aligned_cols=573 Identities=51% Similarity=0.789 Sum_probs=521.2
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
+|++|+|++|++|.|||+|+.++|+++|+++|..+++++.+.+||+|+++|++|++++||++|+.++|+||+|+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 47889999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-CCCCeEEEEEcCCCcccchHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-GKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-g~~~~VvaviGDGal~~G~~~Ea 234 (721)
|++++|+.+++.++|++++++|||++.+++++.+++|++|+++|+|+|+|+|.+++ +++++|||++|||++++|++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
+++|+++++|+++|+|||+++ ++.+++.+..++..
T Consensus 161 l~~A~~~~~nli~IvdnN~~~--------i~~~~~~~~~~~~~------------------------------------- 195 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMS--------ISPNVGALSNYLAR------------------------------------- 195 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCc--------CCCcchhhhhhhcc-------------------------------------
Confidence 999999999999999999984 23333322100000
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CC
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SN 392 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~ 392 (721)
.+...+|+++||++++++||||++++.++++++++ .++|++|+++|.||+||+++|+ ++.+||+.++| ..
T Consensus 196 ----~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~--~~~~~h~~~~~~~~~ 267 (580)
T PRK05444 196 ----LRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEA--DPIKYHGVGKFDPET 267 (580)
T ss_pred ----ccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhc--CccccCCCCCCCccc
Confidence 00134789999999977899999999999999987 4799999999999999999986 57789999888 33
Q ss_pred CCCCC---CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee
Q 004968 393 SLPFG---NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP 469 (721)
Q Consensus 393 g~~~~---~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p 469 (721)
++..+ ....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||++|++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p 347 (580)
T PRK05444 268 GEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKP 347 (580)
T ss_pred CCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCee
Confidence 33221 122689999999999999999999999999988888988999999999999999999999999999999999
Q ss_pred EEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 470 ~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
|+++|++|++|++|||++++|++++||+++++++|++|.||+|||+++|+++||++||++|++|+|+.|++.++++|++.
T Consensus 348 ~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~ 427 (580)
T PRK05444 348 VVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAY 427 (580)
T ss_pred EEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH
Q 004968 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI 629 (721)
Q Consensus 550 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~ 629 (721)
.++|+|||++|+.....+.+ +.+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+
T Consensus 428 ~~~P~~ir~~r~~~~~~~~~--~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 428 DDGPIAIRYPRGNGVGVELP--ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCCcEEEEecCCCCCCCCCC--CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 68999999999885432212 246788999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 630 KLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 630 e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
+++.+++++++++||+||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 578 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILE 578 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999998 59999999999999875 458899999999999999999999999999999999987
Q ss_pred Hh
Q 004968 709 LL 710 (721)
Q Consensus 709 ~l 710 (721)
++
T Consensus 579 ~~ 580 (580)
T PRK05444 579 LL 580 (580)
T ss_pred hC
Confidence 53
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-98 Score=811.94 Aligned_cols=601 Identities=29% Similarity=0.396 Sum_probs=500.3
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcc---cC--CC----CcEEEecC
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDV 149 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~v---f~--~p----~D~iv~d~ 149 (721)
+|.+++++.|..+++|++.+++.++++. +||+++++|.++....|+.. |+ .| +|+||||+
T Consensus 2 ~~~~~~~~~~~~~n~lri~si~~~~~a~-----------sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~ 70 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILSIDATSAAK-----------SGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSN 70 (632)
T ss_pred CchhhhhhhHHHhhhhhhhhHHHHHhhh-----------cCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEec
Confidence 4567777777777777777776655554 49999999998888888753 32 12 69999999
Q ss_pred CchH---HHHHHHhC--chhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEc
Q 004968 150 GEQT---YAHKILTG--RRSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVIS 222 (721)
Q Consensus 150 GH~~---y~h~~ltG--r~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviG 222 (721)
||+| |+|++|+| +.+++.++||.++ +.|||. .+++++.++|||+|++|+.|+|||+++|+.++ +++|||++|
T Consensus 71 GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlG 149 (632)
T KOG0523|consen 71 GHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLG 149 (632)
T ss_pred cccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEc
Confidence 9999 99999999 7999999999998 567776 57999999999999999999999999999999 999999999
Q ss_pred CCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCcc-CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCc
Q 004968 223 NGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300 (721)
Q Consensus 223 DGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~ 300 (721)
||+++||++||||++|+++++ |||+|.+||+. |+++.+ .+.+.+++.+ +.-..++......+.
T Consensus 150 DG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~i-s~~g~t~~~~~~dV~~~--------------r~ea~g~~~~~V~~~ 214 (632)
T KOG0523|consen 150 DGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKI-SIDGATSLGFDEDVYQL--------------RFEAFGWNVIIVDGG 214 (632)
T ss_pred CchhccchHHHHHhhhhhcccCCEEEEEccccc-cCCCCCcccccccHHHH--------------HHHHhCceEEEEcCc
Confidence 999999999999999999995 55555555554 666655 3455555432 222223333444566
Q ss_pred chHHHHHHHHHH--hhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccc
Q 004968 301 GMHEWAAKVDEY--ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378 (721)
Q Consensus 301 ~~~~~~~~~~~~--~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~ 378 (721)
++.++.+++.++ ++++.+.-..+.|+++|+.+++++++|......+.++++++...- |+++++.+.++++||..+..
T Consensus 215 d~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~ 293 (632)
T KOG0523|consen 215 DVDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVE 293 (632)
T ss_pred CHHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccc
Confidence 777887777554 477766667889999999999999999988888778888776334 99999999999999987752
Q ss_pred cccccccccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHH
Q 004968 379 EAIEKQQEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQH 454 (721)
Q Consensus 379 ~~~~~~Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~ 454 (721)
......|++..+ .+..+.+ .+...++++|.++|.++++.+|+++++++||..|+.++-|+++||+|||++||+||+
T Consensus 294 ~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~ 373 (632)
T KOG0523|consen 294 DARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQN 373 (632)
T ss_pred cccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhh
Confidence 233567777766 4454444 344789999999999999999999999999999998988999999999999999999
Q ss_pred HHHHHHHHHhCCC-eeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEe
Q 004968 455 AVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMA 532 (721)
Q Consensus 455 ~v~~AaGlA~~G~-~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~ 532 (721)
|+++|+|+|..|. +|||.||+.|++||+||++++ ++.+.+++++.++.|+ +|+||||||++||+++||++||++||+
T Consensus 374 mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~ 452 (632)
T KOG0523|consen 374 MVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFR 452 (632)
T ss_pred hHHhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEe
Confidence 9999999999997 999999999999999999766 7888888888888877 899999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEeCC-cEEEEEechhhHHHHHHHHHHH
Q 004968 533 PSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVEGK-DVALLGYGAMVQNCLKARALLS 610 (721)
Q Consensus 533 Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~eG~-dv~Iva~Gs~v~~al~Aa~~L~ 610 (721)
|+|..|+..++..|++..+.|.+++++|++.+..+ ....+++||+. +++++. ||+||++|+++++|++||+.|+
T Consensus 453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~----~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~ 528 (632)
T KOG0523|consen 453 PADGNETENAVATAANTKGTPSIRTLSRQNLPIYN----NTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLS 528 (632)
T ss_pred cCchHHHHHHHHHHHhcCCCeeEEEecCccccccC----CCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999865432 13457788886 788887 9999999999999999999999
Q ss_pred hCCCCeEEeecCccccccHHHHHHHhccCCeEEE-EcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 611 KLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT-VEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 611 ~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvv-vEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
++||+++|+|++++||||..+|+++.+.++..++ +|+++ .||++.. +++..+.++. ..+..++ +|+|+.+|++
T Consensus 529 ~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~---~~a~~g~~~~-~~~~~~~-~~~~~~sG~p 603 (632)
T KOG0523|consen 529 EDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVA---VTAAWGKYPG-ILVPSLG-VDTFGRSGPP 603 (632)
T ss_pred hcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhhe---eeehhcccCC-ccceeec-cccCCcCCCC
Confidence 9999999999999999999999999988875554 55555 3455543 3433343332 3356677 4999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcchhhh
Q 004968 689 TQQLALAGLTGHHIAATALSLLGRTREAL 717 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 717 (721)
.+|++.|||++++|++++++++++.|+++
T Consensus 604 ~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 604 PELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999998875
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1e-94 Score=841.85 Aligned_cols=536 Identities=19% Similarity=0.230 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-c--cCC------CCcEEEecCCchH---HHHHHHhCch
Q 004968 97 KELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-V--FHA------PVDKILWDVGEQT---YAHKILTGRR 163 (721)
Q Consensus 97 ~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-v--f~~------p~D~iv~d~GH~~---y~h~~ltGr~ 163 (721)
...+++|+++|..+++++. .++||+|+++|++|++++||+ + |++ ++|+||||+||++ |+|++++|++
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 3457789999999999996 588999999999999999996 5 553 5899999999999 9999999984
Q ss_pred ---hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccc
Q 004968 164 ---SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAG 229 (721)
Q Consensus 164 ---~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G 229 (721)
+++.++|+.++ ++|||++.+++++.+++||+|+++|.|+|+|+|+|+++. +++|||++|||++++|
T Consensus 84 ~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG 163 (661)
T PTZ00089 84 LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEG 163 (661)
T ss_pred CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhH
Confidence 66788888876 679999989999999999999999999999999998764 7899999999999999
Q ss_pred hHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
++|||+|+|+.+++ |||+|+|||+++ +++++... . .
T Consensus 164 ~~~EAl~~A~~~~L~nLi~i~d~N~~~--------i~~~~~~~--------~------------------~--------- 200 (661)
T PTZ00089 164 VSQEALSLAGHLGLEKLIVLYDDNKIT--------IDGNTDLS--------F------------------T--------- 200 (661)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcc--------cccCcccc--------c------------------C---------
Confidence 99999999999995 699999999984 33333200 0 0
Q ss_pred HHHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
.+...+|++|||+|+.++||| |+++|.++|+++++. .++|++||++|.||+|+ ..| +..+|||.
T Consensus 201 ----------~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~~e---~~~~~H~~ 265 (661)
T PTZ00089 201 ----------EDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-SKA---GTEKVHGA 265 (661)
T ss_pred ----------ccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-CcC---CCCCccCC
Confidence 011347899999999777999 999999999999874 36899999999999994 444 57899998
Q ss_pred CC-------------------CCC--------------CCCC--------------------------------------
Q 004968 388 AS-------------------DSN--------------SLPF-------------------------------------- 396 (721)
Q Consensus 388 ~~-------------------f~~--------------g~~~-------------------------------------- 396 (721)
++ |.- ++..
T Consensus 266 ~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (661)
T PTZ00089 266 PLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKL 345 (661)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhh
Confidence 52 410 1000
Q ss_pred ---C--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCC-CcEeeccccHHHHHHHHHHHHh-
Q 004968 397 ---G--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFP-ERYFDVGMAEQHAVTFSAGLAC- 464 (721)
Q Consensus 397 ---~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~- 464 (721)
. .+..+.+++++++|.++++.+|+++..++|+.+++.+ ..|+++|| +||||+|||||+|+++|+|||+
T Consensus 346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~ 425 (661)
T PTZ00089 346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAH 425 (661)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHc
Confidence 0 0112467788888999999999999999999887765 37999999 8999999999999999999999
Q ss_pred CCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 004968 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMV 543 (721)
Q Consensus 465 ~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l 543 (721)
.|++||++||++|++|++||| +++|++++||+|++++.|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..++
T Consensus 426 ~G~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l 504 (661)
T PTZ00089 426 GGFIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAY 504 (661)
T ss_pred CCCeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHH
Confidence 789999999999999999996 7779999999999988887 89999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeC---CcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 544 ATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG---KDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 544 ~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG---~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
++|+...++|+|||++|+..+.. +. ....+..++++++++| +|++||++|+++.+|++|++.|++ ||+++|||
T Consensus 505 ~~al~~~~gP~~irl~R~~~~~~--~~-~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~ 580 (661)
T PTZ00089 505 ALALANAKTPTILCLSRQNTPPL--PG-SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVS 580 (661)
T ss_pred HHHHHcCCCCEEEEecCCCCCCc--CC-CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEe
Confidence 99986678999999999975432 21 1223345667899975 799999999999999999999999 99999999
Q ss_pred cCccccccHHHHHHH---hc-cCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLVREL---CQ-NHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i~~l---~~-~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++.+... .. ++..++++|++...||.. . ..+++|++| |+.+|+.+++++++|
T Consensus 581 ~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~G 644 (661)
T PTZ00089 581 MPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFG 644 (661)
T ss_pred CCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhC
Confidence 999999999987532 44 455689999997655431 0 114799988 999999999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 004968 697 LTGHHIAATALSLLG 711 (721)
Q Consensus 697 l~~~~I~~~i~~~l~ 711 (721)
||+++|+++|++++.
T Consensus 645 l~~e~I~~~i~~~l~ 659 (661)
T PTZ00089 645 FTVENVVEKARALAA 659 (661)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
No 11
>PLN02790 transketolase
Probab=100.00 E-value=4.8e-94 Score=835.38 Aligned_cols=531 Identities=20% Similarity=0.243 Sum_probs=454.1
Q ss_pred HHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc---cCC------CCcEEEecCCchH---HHHHHHhCch----hhhHH
Q 004968 106 IRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FHA------PVDKILWDVGEQT---YAHKILTGRR----SLIHT 168 (721)
Q Consensus 106 iR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v---f~~------p~D~iv~d~GH~~---y~h~~ltGr~----~~~~~ 168 (721)
||..+++++. .++||+|+++|++|++++||+. ||+ ++|+||||+||++ |+|++++|+. +++.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 5899999996 5889999999999999999976 663 5899999999999 9999999996 78999
Q ss_pred HHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-----CC-----CCeEEEEEcCCCcccchHHHHHHH
Q 004968 169 LRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-----GK-----RECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 169 ~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-----g~-----~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
+||+++. .|||++.++|++.+++||+|+++|.|+|||+|.|+. ++ +++|||++|||++++|++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999984 599999999999999999999999999999999953 43 689999999999999999999999
Q ss_pred hhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc
Q 004968 238 AGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (721)
Q Consensus 238 A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (721)
|+.+++ |||+|+|||+++ ++++++... ...
T Consensus 161 A~~~~L~nli~i~d~N~~~--------i~~~~~~~~-----------------------------~~~------------ 191 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHIS--------IDGDTEIAF-----------------------------TED------------ 191 (654)
T ss_pred HHHhCCCCEEEEEecCCcc--------ccCCccccc-----------------------------chh------------
Confidence 999996 599999999984 344443110 000
Q ss_pred cCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC-------
Q 004968 317 IGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------- 388 (721)
Q Consensus 317 ~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------- 388 (721)
...+|++|||+++++.|| ||+++|.++++++++. .++|++||++|.||+|+++.| +..+|||.+
T Consensus 192 ----~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e---~~~~~H~~~~~~~~~~ 263 (654)
T PLN02790 192 ----VDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKA---NSYSVHGAALGEKEVD 263 (654)
T ss_pred ----HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCcccc---CCCCcCCCCCCHHHHH
Confidence 124689999999965555 8999999999999863 478999999999999999876 488999986
Q ss_pred -----------CC--C-CC-----------CCC-------------------------------------------CCCc
Q 004968 389 -----------SD--S-NS-----------LPF-------------------------------------------GNYS 400 (721)
Q Consensus 389 -----------~f--~-~g-----------~~~-------------------------------------------~~~~ 400 (721)
+| . +. +.. +.+.
T Consensus 264 ~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (654)
T PLN02790 264 ATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPA 343 (654)
T ss_pred HHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcc
Confidence 45 1 11 000 0001
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHh-CCCcEeeccccHHHHHHHHHHHHhC--CCeeEEE
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEK-FPERYFDVGMAEQHAVTFSAGLACG--GLKPFCI 472 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~-fp~R~~d~GIaE~~~v~~AaGlA~~--G~~p~~~ 472 (721)
...+++++++|..+++.+|++++.+||+.+++. +..|+++ ||+||||+|||||+|+++|+|||+. |++||++
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 245778888999999999999999999987754 6889998 5999999999999999999999996 6999999
Q ss_pred ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC
Q 004968 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~ 551 (721)
||+.|+.|+++|| +++|++++||+|++++.|+ +|+||+|||+++|+++||.+||++|++|+|++|+..++++|+...+
T Consensus 424 tf~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~ 502 (654)
T PLN02790 424 TFFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRK 502 (654)
T ss_pred ecHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998 6679999999999988877 7999999999999999999999999999999999999999987668
Q ss_pred CCEEEEecCCCcccccCCCCCCcceecCceEEEEeC-----CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcccc
Q 004968 552 RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG-----KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKP 626 (721)
Q Consensus 552 ~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG-----~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~P 626 (721)
+|+|||++|+..+.. +......++.|+ ++++++ +|++||++|+++.+|++|++.|+++||+++|||++|++|
T Consensus 503 gP~~irl~R~~~~~~--~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikp 579 (654)
T PLN02790 503 RPTVLALSRQKVPNL--PGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWEL 579 (654)
T ss_pred CCEEEEecCCCCCCC--CCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccch
Confidence 999999999875432 211124567786 677774 799999999999999999999999999999999999999
Q ss_pred ccHHHHH---HHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 627 LDIKLVR---ELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 627 lD~e~i~---~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
||++... +++ ++++.+|++|++..+||++. +. .+.+++|+ |+|+.+|+.+++++++|||+++|
T Consensus 580 ld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~----~~--------~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~I 646 (654)
T PLN02790 580 FEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKY----VG--------SKGKVIGV-DRFGASAPAGILYKEFGFTVENV 646 (654)
T ss_pred hhhhHHHHHHhhhccccceEEEecCccchhHHHh----cC--------CCceEEEe-CCCcCcCCHHHHHHHhCCCHHHH
Confidence 9998854 566 67778999999998888652 11 23467898 99999999999999999999999
Q ss_pred HHHHHHHh
Q 004968 703 AATALSLL 710 (721)
Q Consensus 703 ~~~i~~~l 710 (721)
+++|++++
T Consensus 647 ~~~i~~~~ 654 (654)
T PLN02790 647 VAAAKSLL 654 (654)
T ss_pred HHHHHHhC
Confidence 99998754
No 12
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.5e-93 Score=828.58 Aligned_cols=538 Identities=19% Similarity=0.210 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC---------CCCcEEEecCCchH---HHHHHHhCch--
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH---------APVDKILWDVGEQT---YAHKILTGRR-- 163 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~---------~p~D~iv~d~GH~~---y~h~~ltGr~-- 163 (721)
.+++|++||..+++++.+ ++||+|+++|+++++.+||+.|. .++|+||+|+||++ |++++++|+.
T Consensus 4 ~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12753 4 RKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCC
Confidence 367799999999999996 78999999999999999997532 23799999999999 9999999984
Q ss_pred -hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchH
Q 004968 164 -SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (721)
Q Consensus 164 -~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G~~ 231 (721)
+++.++|++++ +.|||.....+...+++|++|+++|.|+|||+|.|+++. +++|||++|||++++|++
T Consensus 84 ~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12753 84 IEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHH
Confidence 78999999997 789998877788888999999999999999999998763 689999999999999999
Q ss_pred HHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||+|+|+.+++ |||+|++||+++ ++.++... +.
T Consensus 164 ~EA~~~A~~~kL~nLi~ivd~N~~~--------i~~~~~~~---~~---------------------------------- 198 (663)
T PRK12753 164 HEVCSLAGTLGLGKLIGFYDHNGIS--------IDGETEGW---FT---------------------------------- 198 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCc--------CCCChhhh---cC----------------------------------
Confidence 999999999997 599999999984 33333311 00
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC--
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA-- 388 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~-- 388 (721)
.+...+|++|||+++.++||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+|||.+
T Consensus 199 --------~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~---~~~~H~~~l~ 266 (663)
T PRK12753 199 --------DDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAG---KEESHGAPLG 266 (663)
T ss_pred --------hhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccC---CCCccCCCCC
Confidence 001347899999999778999999999999999863 4789999999999999999874 78999942
Q ss_pred ----------------CC-------------CCCCC------------------------------CC------------
Q 004968 389 ----------------SD-------------SNSLP------------------------------FG------------ 397 (721)
Q Consensus 389 ----------------~f-------------~~g~~------------------------------~~------------ 397 (721)
+| ++|++ .+
T Consensus 267 ~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T PRK12753 267 EEEVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYIN 346 (663)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34 11211 00
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCCCcEeeccccHHHHHHHHHHHHh-CC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G 466 (721)
.+....+++++++|.++++.+|++++++||+.+++.+ ..|.++||+||||+|||||+|+++|+|||+ .|
T Consensus 347 ~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G 426 (663)
T PRK12753 347 ELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGG 426 (663)
T ss_pred HhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCC
Confidence 1123456788999999999999999999999888766 789999999999999999999999999999 78
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||++||++|++|++|||++ .|++++||+++++++|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..++..
T Consensus 427 ~~P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~ 505 (663)
T PRK12753 427 FVPYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKL 505 (663)
T ss_pred CeEEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHH
Confidence 999999999999999999985 49999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCC--CcceecCceEEEEeCC---cEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~--~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
|++..++|+|||++|++.+.. .... ...+..|+ +++++|. |++||++|+++++|++|++.|+++||+++|||
T Consensus 506 al~~~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~ 582 (663)
T PRK12753 506 AIERHNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVS 582 (663)
T ss_pred HHhcCCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 987568999999999875432 1111 12344554 8889864 99999999999999999999999999999999
Q ss_pred cCccccccHHHH--HH-Hhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLV--RE-LCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i--~~-l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++.+ ++ ++.. ....|+||++...+ +.++. +.+.+++|+ |+|+.+|+.+++++++|
T Consensus 583 ~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~----~~~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~G 649 (663)
T PRK12753 583 MPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADY----WYKYV--------GLKGAIIGM-TGFGESAPADKLFPFFG 649 (663)
T ss_pred CCcCCccchhHHHHHHhhcccccceEEEEccChHHH----HHHHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhC
Confidence 999999999987 22 2222 22348999984222 22221 235578998 89999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 004968 697 LTGHHIAATALSLL 710 (721)
Q Consensus 697 l~~~~I~~~i~~~l 710 (721)
||++.|++++++++
T Consensus 650 lt~~~Iv~~i~~~~ 663 (663)
T PRK12753 650 FTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998763
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=5e-92 Score=819.79 Aligned_cols=541 Identities=23% Similarity=0.283 Sum_probs=467.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-ccC--------CCCcEEEecCCchH---HHHHHHh
Q 004968 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h~~lt 160 (721)
|..++|+++|+++|..+++++. ..+||+|+++|++|++++||+ +|+ .++|+||+|+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5778999999999999999996 578999999999999999997 543 24799999999999 9999999
Q ss_pred Cc---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCc
Q 004968 161 GR---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTT 226 (721)
Q Consensus 161 Gr---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal 226 (721)
|+ ++++.++|++++ +.|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 889999999998 699999988899989999999999999999999998887 8999999999999
Q ss_pred ccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHH
Q 004968 227 MAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEW 305 (721)
Q Consensus 227 ~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~ 305 (721)
++|++||||++|+.+++ |+++|+|||+++ + +.++...
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~~-~-------~~~~~~~---------------------------------- 200 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRIS-I-------DGPTEGW---------------------------------- 200 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCCc-c-------ccccccc----------------------------------
Confidence 99999999999999996 599999999984 1 1111100
Q ss_pred HHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccc
Q 004968 306 AAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQ 385 (721)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~H 385 (721)
..++...+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||
T Consensus 201 -----------~~~~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~---~~~~H 263 (624)
T PRK05899 201 -----------FTEDVKKRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG---THKVH 263 (624)
T ss_pred -----------ccccHHHHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC---CCccc
Confidence 00112457899999998 5899999999999999987 4789999999999999999885 67899
Q ss_pred ccCCC---------CCC---CCC--C---------------C-----------CcccHHHHHHHHHHHHHHcCCCeEEEe
Q 004968 386 EGASD---------SNS---LPF--G---------------N-----------YSRTYDDCFIEALVMEAEKDKDIVVVH 425 (721)
Q Consensus 386 g~~~f---------~~g---~~~--~---------------~-----------~~~~~~~~~~~~L~~~~~~d~~iv~i~ 425 (721)
+..+. +-+ ++. + . ...+++++|+++|.+++++||++++++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~ 343 (624)
T PRK05899 264 GAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGS 343 (624)
T ss_pred CCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 87543 000 000 0 0 112348999999999999999999999
Q ss_pred cCCCCccChHHHH------HhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEecHhhHHHHHHHHHHHhhcCCcceEE
Q 004968 426 AGMEMDLSLQLFQ------EKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRF 498 (721)
Q Consensus 426 ad~~~~~~l~~f~------~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~ 498 (721)
+|+++++++..|. ++||+||||+|||||+|+++|+|||+.| ++||+++|++|++|+++||++. +++++||++
T Consensus 344 ~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~ 422 (624)
T PRK05899 344 ADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIY 422 (624)
T ss_pred CCCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEE
Confidence 9999888887666 6899999999999999999999999999 9999999999999999999875 899999999
Q ss_pred EEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcce
Q 004968 499 VITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPI 576 (721)
Q Consensus 499 v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~ 576 (721)
+.+++|+ +|.+|+|||+.+|+++||++||++|++|+|++|++.+++++++..++|+|||++|+..+. +.+. ..+.+
T Consensus 423 v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~ 500 (624)
T PRK05899 423 VFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGV 500 (624)
T ss_pred EEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCccccccc
Confidence 9999998 789999999999999999999999999999999999999999754899999999976432 1111 12467
Q ss_pred ecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH---HHHHh-ccCCeEEEEcCCCCCC
Q 004968 577 EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIGG 652 (721)
Q Consensus 577 ~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~---i~~l~-~~~~~vvvvEe~~~gG 652 (721)
+.|+ +++++|+|++||++|+++++|++|++.|+++||+++|||++|++|||++. +...+ +.+..+|++|++..+|
T Consensus 501 ~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g 579 (624)
T PRK05899 501 AKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADG 579 (624)
T ss_pred cCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccc
Confidence 7886 88999999999999999999999999999999999999999999999983 44444 5556788889887777
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 653 ~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
|. .++ +.+++++|++| |+++|+++++++++|||+++|+++|++++
T Consensus 580 ~~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 580 WY----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred hh----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 72 222 23568999999 99999999999999999999999998754
No 14
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.8e-88 Score=785.84 Aligned_cols=536 Identities=20% Similarity=0.240 Sum_probs=453.1
Q ss_pred HHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-ccC----CC----CcEEEecCCchH---HHHHHHhCch---h
Q 004968 101 QLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGRR---S 164 (721)
Q Consensus 101 ~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-vf~----~p----~D~iv~d~GH~~---y~h~~ltGr~---~ 164 (721)
..++++|..+++++. ..+||+|+++|+++++.+||+ +++ .| +|+||+|+||.+ |+.+.+.|+. +
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999998 467999999999999999995 343 22 699999999999 9999999974 6
Q ss_pred hhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHHH
Q 004968 165 LIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAYE 233 (721)
Q Consensus 165 ~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~E 233 (721)
++.++|+.++ +.|||.+..++...+++|++|++++.|+|+|+|.|+++ .+++|+|++|||++++|.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 7999999996 88999987788888999999999999999999999863 378999999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 004968 234 AMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (721)
Q Consensus 234 aln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~ 312 (721)
|+++|+.+++| |++|++||+++ + +.++... .
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~-i-------~~~~~~~-------~--------------------------------- 193 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRIS-I-------DGAVDGS-------F--------------------------------- 193 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCee-e-------ccccccc-------c---------------------------------
Confidence 99999999965 99999999984 2 2222100 0
Q ss_pred hhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC----
Q 004968 313 ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA---- 388 (721)
Q Consensus 313 ~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~---- 388 (721)
..+...+|++|||+++.+.||||++++.++++++++. .++|++|+++|.||+|++++|+ ..+|||.+
T Consensus 194 -----~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~---~~~~H~~~~~~~ 264 (653)
T TIGR00232 194 -----TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAG---THGVHGAPLGDE 264 (653)
T ss_pred -----CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCC---CCcccCCCCCHH
Confidence 0011346899999999433999999999999999873 2489999999999999998885 77899874
Q ss_pred --------------CCC---------------CCCC--------------------------C----C------------
Q 004968 389 --------------SDS---------------NSLP--------------------------F----G------------ 397 (721)
Q Consensus 389 --------------~f~---------------~g~~--------------------------~----~------------ 397 (721)
+|. .+++ + +
T Consensus 265 ~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 344 (653)
T TIGR00232 265 DVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKA 344 (653)
T ss_pred HHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhc
Confidence 120 0100 0 0
Q ss_pred -CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHH-----HHHhCCCcEeeccccHHHHHHHHHHHHh-CCCeeE
Q 004968 398 -NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQL-----FQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPF 470 (721)
Q Consensus 398 -~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~-----f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G~~p~ 470 (721)
....+.+++|+++|.++++.+|+++++++|+.+++++.. |.++||+||||+||+||+|+++|+|||+ .|++||
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~ 424 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPY 424 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEE
Confidence 011246788999999999999999999999988877654 8899999999999999999999999999 689999
Q ss_pred EEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 471 ~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
++||++|++|+++||+ +.|++++||++++++.|+ +|+||+|||+++|+++||.+||++|++|+|+.|+..++++|+..
T Consensus 425 ~~tf~~F~~r~~~~ir-~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 425 GGTFLMFVDYARPAIR-LAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALES 503 (653)
T ss_pred EEEhHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc
Confidence 9999999999999985 559999999999999888 89999999999999999999999999999999999999999966
Q ss_pred CCCCEEEEecCCCcccccCCCCCCcceecCceEEE--EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccc
Q 004968 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVL--VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL 627 (721)
Q Consensus 550 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl--~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~Pl 627 (721)
.++|+|||++|++.+.. .+.....+..|+ +++ ++|+|++||++|+++.+|++|++.|+++||+++|||++|++||
T Consensus 504 ~~gP~~irl~r~~~~~~--~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpl 580 (653)
T TIGR00232 504 QDGPTALILSRQNLPQL--EESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLF 580 (653)
T ss_pred CCCcEEEEEcCCccCCC--CcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCccc
Confidence 78999999999875422 111113456665 677 6789999999999999999999999999999999999999999
Q ss_pred cHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHH
Q 004968 628 DIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 704 (721)
Q Consensus 628 D~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~ 704 (721)
|++. +.++++++..+||+|+|+.+||. ... +...+++|+ |+|+.+|+++++++++|||+++|++
T Consensus 581 d~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~~ 647 (653)
T TIGR00232 581 DKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVVA 647 (653)
T ss_pred ccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHHH
Confidence 7654 88888888899999999876663 111 111257898 9999999999999999999999999
Q ss_pred HHHHHh
Q 004968 705 TALSLL 710 (721)
Q Consensus 705 ~i~~~l 710 (721)
+|++++
T Consensus 648 ~i~~~~ 653 (653)
T TIGR00232 648 KAKKLL 653 (653)
T ss_pred HHHHhC
Confidence 998764
No 15
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=4.4e-87 Score=771.30 Aligned_cols=540 Identities=18% Similarity=0.210 Sum_probs=452.4
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc-cC----CC----CcEEEecCCchH---HHHHHHhCc---
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV-FH----AP----VDKILWDVGEQT---YAHKILTGR--- 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v-f~----~p----~D~iv~d~GH~~---y~h~~ltGr--- 162 (721)
.+++++++|..+++++.+ .+||+|+++|+++++.+||+. ++ .| +|+||+|+||.+ |+.+.+.|+
T Consensus 4 ~~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12754 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 467799999999999984 679999999999999999953 33 22 699999999999 999999997
Q ss_pred hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 004968 163 RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 163 ~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~ 231 (721)
.+++.++||+++ +.|||.....++..+++|++|++++.|+|||+|.|+++ .+++|+|++|||+++||.+
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 778999999987 78999887778888999999999999999999999886 3789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||+++|+++++| ||+|++||+++ ++.++... .
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~--------idg~~~~~---~----------------------------------- 197 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGIS--------IDGHVEGW---F----------------------------------- 197 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCc--------cCcchhhc---c-----------------------------------
Confidence 9999999999975 89999999984 22221100 0
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCC-
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS- 389 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~- 389 (721)
..+....|++|||+++.++||||++++.+++++++.. .++|++|+++|.||+|.++.|+ ..+|||.+.
T Consensus 198 -------~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~---~~~~Hg~~l~ 266 (663)
T PRK12754 198 -------TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG---THDSHGAPLG 266 (663)
T ss_pred -------CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCC---CccccCCCCC
Confidence 0011346899999999548999999999999998863 4789999999999999998885 789998741
Q ss_pred -----------------C-------------CCCCCC------------------------------C------------
Q 004968 390 -----------------D-------------SNSLPF------------------------------G------------ 397 (721)
Q Consensus 390 -----------------f-------------~~g~~~------------------------------~------------ 397 (721)
| +.+++. +
T Consensus 267 ~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T PRK12754 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIA 346 (663)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhh
Confidence 2 011110 0
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHhCCCcEeeccccHHHHHHHHHHHHh-CC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G 466 (721)
.+....+++++++|.++++.+|+++++++|+.+++. ...|+++||+|||++||+||+|+++|+|||+ .|
T Consensus 347 ~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G 426 (663)
T PRK12754 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGG 426 (663)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCC
Confidence 011245789999999999999999999999988775 5789899999999999999999999999999 68
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||++||++|++|+++||++. |++++||++++++.|+ +|+||+|||+++|+++||.+|||+|+.|+|+.|+..++..
T Consensus 427 ~~Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~ 505 (663)
T PRK12754 427 FLPYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (663)
T ss_pred CeEEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHH
Confidence 9999999999999999999865 9999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCC---cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
++...++|+|||++|++.+...........+..|+ +++++|. |++||++|+++.+|++|++.|+++||+++|||++
T Consensus 506 a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~ 584 (663)
T PRK12754 506 GVERQDGPTALILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP 584 (663)
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcC
Confidence 99866899999999987543211011012344555 8888874 9999999999999999999999999999999999
Q ss_pred ccccccHHH---HHHHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCC
Q 004968 623 FCKPLDIKL---VRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 698 (721)
Q Consensus 623 ~l~PlD~e~---i~~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~ 698 (721)
|++|||++. ...++.. ....|++|.+...||...+ ..++. .+|+ |+|+.+|+.+++++++|||
T Consensus 585 s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~----~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t 651 (663)
T PRK12754 585 STDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYV----GLNGA--------IVGM-TTFGESAPAELLFEEFGFT 651 (663)
T ss_pred ccCcCCCCCHHHHHhcCccccccceEeecccccchhhhc----cCCCC--------EEEe-CCCCCCCCHHHHHHHhCCC
Confidence 999999862 2223322 2245889998878887543 33331 3787 8999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 004968 699 GHHIAATALSLL 710 (721)
Q Consensus 699 ~~~I~~~i~~~l 710 (721)
++.|++++++++
T Consensus 652 ~e~I~~~~~~~~ 663 (663)
T PRK12754 652 VDNVVAKAKALL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 16
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-79 Score=672.09 Aligned_cols=541 Identities=22% Similarity=0.248 Sum_probs=459.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc---cC--CC----CcEEEecCCchH---HHHHHHhCc
Q 004968 96 IKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 96 ~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v---f~--~p----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.+.++++++.||-..++++.+ ++||+|.++|++++...||.. || .| |||||+|.||.+ |+...|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 456789999999999999985 799999999999999999853 33 34 899999999999 999999998
Q ss_pred ---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCccc
Q 004968 163 ---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMA 228 (721)
Q Consensus 163 ---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~ 228 (721)
.+++..+||+++ .+|||.....+.....||++|+||+.|+|||+|.+..+. |+.++|++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 678899999996 789999877888888999999999999999999886543 579999999999999
Q ss_pred chHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHH
Q 004968 229 GQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (721)
Q Consensus 229 G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (721)
|+++||...|++++ .+||+|.++|+.+ ++..+... +
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~Is--------iDG~~~~~---f-------------------------------- 199 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDIS--------IDGDTSLS---F-------------------------------- 199 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCce--------eccCcccc---c--------------------------------
Confidence 99999999999999 8999999999973 33332210 0
Q ss_pred HHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
+.+....||++||+++.++||||++++.+++++||.. .++|++|+|+|+.|+|.+..| +..++||.
T Consensus 200 ----------~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~ke---gt~~~HGa 265 (663)
T COG0021 200 ----------TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKE---GTHKVHGA 265 (663)
T ss_pred ----------chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcC---CCccccCC
Confidence 0011356999999999999999999999999999985 679999999999999999877 48899998
Q ss_pred CC------------------C--------------CCCCCC------------------------------C--------
Q 004968 388 AS------------------D--------------SNSLPF------------------------------G-------- 397 (721)
Q Consensus 388 ~~------------------f--------------~~g~~~------------------------------~-------- 397 (721)
+. | +.|+.. +
T Consensus 266 pLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~ 345 (663)
T COG0021 266 PLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLP 345 (663)
T ss_pred CCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhh
Confidence 52 2 122110 0
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHH-HhCCCcEeeccccHHHHHHHHHHHHhCC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~~G 466 (721)
.+....|++..++|..+....|+++..+||+.+|+.+ ..|. +.|++|++.+||+|++|.++++|||++|
T Consensus 346 ~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhG 425 (663)
T COG0021 346 KFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425 (663)
T ss_pred hhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhc
Confidence 0124568899999999999999999999999988754 3444 5778999999999999999999999996
Q ss_pred -CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 467 -LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 467 -~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
++||.+||..|..++..++ +.+|++++|+++|.+|.++ +|+||||||++++++.+|.|||+.|+.|+|+.|...+|+
T Consensus 426 g~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~ 504 (663)
T COG0021 426 GFIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWK 504 (663)
T ss_pred CceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHH
Confidence 6999999999999999988 5779999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEe----CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVE----GKDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~e----G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
.|+.+.++|+++.++|++.+.. +.. ........+|++++ +.|++||++||.|..|++|++.|+++|++++||+
T Consensus 505 ~Al~~~~gPt~LiltRQnlp~l--~~t-~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 505 YALERKDGPTALILTRQNLPVL--ERT-DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHHhcCCCCeEEEEecCCCCcc--CCC-ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 9999889999999999996543 221 12223455789988 4799999999999999999999998899999999
Q ss_pred cCccccccHHHH---HHHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLV---RELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i---~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|...||++.. .+++ ......|.||.+...||...+- .+ -..+|+ ++|+.+|+.++++++||
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g----~~--------g~~ig~-~~FG~Sap~~~l~~~fG 648 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVG----LD--------GAVIGM-DSFGASAPGDELFKEFG 648 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcC----CC--------CcEEee-ccCcCCCCHHHHHHHhC
Confidence 999999987543 2333 2334468899999899986542 22 246787 89999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 004968 697 LTGHHIAATALSLL 710 (721)
Q Consensus 697 l~~~~I~~~i~~~l 710 (721)
+|++.|++++++++
T Consensus 649 ft~e~vv~~~~~~l 662 (663)
T COG0021 649 FTVENVVAKAKSLL 662 (663)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999999876
No 17
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=3.3e-78 Score=702.64 Aligned_cols=589 Identities=17% Similarity=0.160 Sum_probs=455.2
Q ss_pred HHHHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCCC-----CcEEEecCCchH---HHHHHHh
Q 004968 97 KELKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 97 ~~l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~lt 160 (721)
+-.+++++.+|..++.++.+ + +||+++++|++++..+||. +|+.+ +| +|+++||.+ |+...+.
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~ 151 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHc
Confidence 44578899999999999974 3 5999999999999999985 45421 56 799999999 8989999
Q ss_pred Cc--hhhhHHHHhh--C-CCCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCcc
Q 004968 161 GR--RSLIHTLRKK--D-GISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTM 227 (721)
Q Consensus 161 Gr--~~~~~~~r~~--g-gl~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~ 227 (721)
|+ .+++.++||. + ++++||.+.. +.+..|.||++|+|++.|+|+|++.|+.. .+++|+|++|||+++
T Consensus 152 G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~ 231 (889)
T TIGR03186 152 GFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD 231 (889)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc
Confidence 98 7789999997 4 5778777755 33577899999999999999999988433 369999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhc-cCcch---
Q 004968 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKR-IGRGM--- 302 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~-~g~~~--- 302 (721)
||.+|||+..|++++ .|||+|+|+|+++ ++.++......++ +.-.+++..+|.+.+. +|.+.
T Consensus 232 EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q--------lDG~t~~~~~~~e-----~l~~kf~a~GW~vi~v~wG~~wd~l 298 (889)
T TIGR03186 232 EPESIGALSLAARERLDNLVFVINCNLQR--------LDGPVRGNGRIID-----ELESQFAGAGWNVIKVLWGSDWDAL 298 (889)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCCCCc--------cCCccccccccch-----HHHHHHHhCCCEEEEEeecCchHHh
Confidence 999999999999999 7999999999984 2222221100011 1112233344443332 11110
Q ss_pred ------HHHHHHHHHHh---------------hc-ccCC--CccceeeeeC----ceEEeccCCCCHHHHHHHHHHHHhc
Q 004968 303 ------HEWAAKVDEYA---------------RG-MIGP--QGSTLFEELG----LYYIGPVDGHNIEDLISVLQEVASL 354 (721)
Q Consensus 303 ------~~~~~~~~~~~---------------~~-~~~~--~~~~l~ea~G----~~~~g~vdGhd~~~l~~al~~a~~~ 354 (721)
..+.+++++.+ +. +++. ....+.+.+. |+. .-+|||++.|.+|+++|++.
T Consensus 299 ~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l--~rgGHD~~~i~~A~~~A~~~ 376 (889)
T TIGR03186 299 FARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL--RRGGHDARKLYAAYDRAVRH 376 (889)
T ss_pred hccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhh--cCCCCCHHHHHHHHHHHHhC
Confidence 01111111111 10 0000 0000000000 011 11799999999999998874
Q ss_pred CCCCCEEEEEEEeccCCCcccccccccccccccCC--------------------------C-C----------------
Q 004968 355 GSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--------------------------D-S---------------- 391 (721)
Q Consensus 355 ~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~--------------------------f-~---------------- 391 (721)
.++|++|.++|+||+|...+++ +..++|+..+ | .
T Consensus 377 -~~~PTvIla~TvkG~G~~~~g~--~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~ 453 (889)
T TIGR03186 377 -EGRPTVILAKTMKGFGMGAIGQ--GRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRA 453 (889)
T ss_pred -CCCCEEEEEEeeecCCCCcccC--ccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHH
Confidence 4689999999999999977665 5678888432 2 0
Q ss_pred --CCC----------C--CC-------------CCcccHHHHHHHHHHHHHH---cCCCeEEEecCCCCccChH------
Q 004968 392 --NSL----------P--FG-------------NYSRTYDDCFIEALVMEAE---KDKDIVVVHAGMEMDLSLQ------ 435 (721)
Q Consensus 392 --~g~----------~--~~-------------~~~~~~~~~~~~~L~~~~~---~d~~iv~i~ad~~~~~~l~------ 435 (721)
.|. + ++ ....+.+.+|++.|..+++ ..++||.|.+|...++||+
T Consensus 454 ~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~ 533 (889)
T TIGR03186 454 ALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQV 533 (889)
T ss_pred HcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccc
Confidence 000 0 00 0224568899999666664 4688999999999998654
Q ss_pred -------------------HHHHhCCCcEeeccccHHHHHH--HHHHHHhC----CCeeEEEecHhhH-HHHHHHHHHHh
Q 004968 436 -------------------LFQEKFPERYFDVGMAEQHAVT--FSAGLACG----GLKPFCIIPSAFL-QRAYDQVVNDV 489 (721)
Q Consensus 436 -------------------~f~~~fp~R~~d~GIaE~~~v~--~AaGlA~~----G~~p~~~tys~Fl-~ra~dqi~~~~ 489 (721)
.|++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|++|. +|++|||++.
T Consensus 534 gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a- 612 (889)
T TIGR03186 534 GIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA- 612 (889)
T ss_pred cccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-
Confidence 3456789999999999999999 99999998 8899999999995 8999999888
Q ss_pred hcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh-----CCCCEEEEecCCC
Q 004968 490 DQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-----DDRPVCFRYPRGA 562 (721)
Q Consensus 490 a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~-----~~~P~~ir~~r~~ 562 (721)
|+++++|++++.++|+ .|.+|+|||..+|+++++.+|||+|+.|+|+.|+..+++.++.+ .++|+|||+.|.+
T Consensus 613 ~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~ 692 (889)
T TIGR03186 613 ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNEN 692 (889)
T ss_pred hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 9999999999999999 58999999999999999999999999999999999999987651 3689999999987
Q ss_pred cccccCCCCCCcceecCc--e-EEEE----eCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHHHH
Q 004968 563 IVRTDLPGYRGIPIEIGK--G-KVLV----EGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRE 634 (721)
Q Consensus 563 ~~~~~~p~~~~~~~~~gk--~-~vl~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i~~ 634 (721)
.....++...-..++.|+ + ++++ +|++++|+++|.++++|++|+++|+++ ||+++|+|+.|+||||++.+.
T Consensus 693 ~~~p~~~~~~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~- 771 (889)
T TIGR03186 693 YAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA- 771 (889)
T ss_pred CCCCCcCCCcccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH-
Confidence 532223322102244444 6 8888 578999999999999999999999987 999999999999999999986
Q ss_pred HhccCCeEEEEcCC---C-CCChHH-------------HHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 635 LCQNHTFLITVEEG---S-IGGFGS-------------HVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 635 l~~~~~~vvvvEe~---~-~gG~gs-------------~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
+++++.|+++|++ + .||+++ .|++++.+.. +.+++++|+ |.|+.+|++++|+++||+
T Consensus 772 -a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fgl 845 (889)
T TIGR03186 772 -AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEV 845 (889)
T ss_pred -HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCC
Confidence 6777899999997 5 699999 9999998853 568999999 999999999999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 004968 698 TGHHIAATALSLLGR 712 (721)
Q Consensus 698 ~~~~I~~~i~~~l~~ 712 (721)
|+++|+.++++++.+
T Consensus 846 da~~Iv~aal~~L~~ 860 (889)
T TIGR03186 846 DRASIVIAALQALAD 860 (889)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998843
No 18
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.3e-77 Score=690.71 Aligned_cols=549 Identities=16% Similarity=0.190 Sum_probs=455.5
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCCC-----CcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.+++++.||...+.++.+ + |||+++++|++++..+||. .|+.| +| +|+++||.+ |+...+.|+
T Consensus 81 e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 159 (891)
T PRK09405 81 ERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD-LVFFQGHASPGIYARAFLEGR 159 (891)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC-EEEECchHHHHHHHHHHHcCC
Confidence 456699999999999873 2 4999999999999999985 45532 56 888999999 999999998
Q ss_pred --hhhhHHHHhh--C-CCCCCCCCCCC-CCCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRKK--D-GISGYTSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~~--g-gl~G~~~~~es-~~d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G 229 (721)
.+++.++||. | ++++||.+..- ++..|.+|++|+|++.|+|+|++.|+ ...+++|+|++|||+++||
T Consensus 160 l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg 239 (891)
T PRK09405 160 LTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEP 239 (891)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccH
Confidence 7789999995 4 79999998653 45678999999999999999999883 4568999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
.+|||+..|++++ .|||||+|+|+++ .+.++-...+.++++
T Consensus 240 ~~~EA~~~A~~~~LdNLi~ivD~N~q~--------lDG~v~~~~~~~~~l------------------------------ 281 (891)
T PRK09405 240 ESLGAISLAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQEL------------------------------ 281 (891)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcc--------cCCccccccccchhH------------------------------
Confidence 9999999999999 7999999999984 233332111101110
Q ss_pred HHHHhhcccCCCccceeeeeCceEEecc----------------------------------------------------
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPV---------------------------------------------------- 336 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~v---------------------------------------------------- 336 (721)
..+|+++||+++.++
T Consensus 282 -------------~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~ 348 (891)
T PRK09405 282 -------------EGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETK 348 (891)
T ss_pred -------------HHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHH
Confidence 235666677766332
Q ss_pred ----------------CCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCC-cccccccccccccccCC----------
Q 004968 337 ----------------DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRA-EDTQKSEAIEKQQEGAS---------- 389 (721)
Q Consensus 337 ----------------dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~-~~ae~~~~~~~~Hg~~~---------- 389 (721)
+|||+++|.+|++++++. .++|++|.++|+||+|. +..| +...+|+..+
T Consensus 349 ~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e---~~~~~H~~~~l~~e~~~~~r 424 (891)
T PRK09405 349 ALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGE---GKNIAHQVKKLDLDDLKHFR 424 (891)
T ss_pred HHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccC---CCccccCCCCCCHHHHHHHH
Confidence 499999999999988874 47899999999999999 5555 4778887421
Q ss_pred ----------------C---CC---------------C-C---------CC--C-------------CCcccHHHHHHHH
Q 004968 390 ----------------D---SN---------------S-L---------PF--G-------------NYSRTYDDCFIEA 410 (721)
Q Consensus 390 ----------------f---~~---------------g-~---------~~--~-------------~~~~~~~~~~~~~ 410 (721)
| +. | . ++ + ....+.+.+|+++
T Consensus 425 ~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~ 504 (891)
T PRK09405 425 DRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRI 504 (891)
T ss_pred HHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHH
Confidence 1 00 0 0 00 0 1224668999999
Q ss_pred HHHHHHc---CCCeEEEecCCCCccCh-------------------------HHHHHhCCCcEeeccccHHHHHH--HHH
Q 004968 411 LVMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSA 460 (721)
Q Consensus 411 L~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~fp~R~~d~GIaE~~~v~--~Aa 460 (721)
|.++++. +++||.+.+|+..++|+ ..|+++||+|||++||+||+|++ +|+
T Consensus 505 L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAA 584 (891)
T PRK09405 505 LNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAA 584 (891)
T ss_pred HHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHH
Confidence 9999986 89999999999998887 56778999999999999999999 999
Q ss_pred HHHhC----CCeeEEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeC
Q 004968 461 GLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (721)
Q Consensus 461 GlA~~----G~~p~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Ps 534 (721)
|+|++ |++||+.+|++| .+|++|||++.+++++++|+++.+++|. .+.+|.|||..+|+.+++.+|||+|+.|+
T Consensus 585 GlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PA 664 (891)
T PRK09405 585 ATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPA 664 (891)
T ss_pred HHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCC
Confidence 99998 889999999999 6999999999999999999999999999 68899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH---hCCC--CEEEEecCCCcccccCCCCCCcceecCce-EEEEeCC------cEEEEEechhhHHH
Q 004968 535 DEDELVDMVATVAS---IDDR--PVCFRYPRGAIVRTDLPGYRGIPIEIGKG-KVLVEGK------DVALLGYGAMVQNC 602 (721)
Q Consensus 535 d~~E~~~~l~~a~~---~~~~--P~~ir~~r~~~~~~~~p~~~~~~~~~gk~-~vl~eG~------dv~Iva~Gs~v~~a 602 (721)
|+.|+..+++.+++ ...+ |.|+|+...+......| ++.++.++|+ +++++|. +|+|+++|.++++|
T Consensus 665 Da~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~~p--e~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eA 742 (891)
T PRK09405 665 FAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMP--EGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREV 742 (891)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCCCC--cccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHH
Confidence 99999999999876 1344 67788753222211222 2456789997 9999976 89999999999999
Q ss_pred HHHHHHHHh-CCCCeEEeecCccccccHHHHHHHh---------ccCCeEEEEcCCCCCChH-------HHHHHHHHhcC
Q 004968 603 LKARALLSK-LGIDVTVADARFCKPLDIKLVRELC---------QNHTFLITVEEGSIGGFG-------SHVSHFIALDG 665 (721)
Q Consensus 603 l~Aa~~L~~-~Gi~v~VId~~~l~PlD~e~i~~l~---------~~~~~vvvvEe~~~gG~g-------s~v~~~l~~~~ 665 (721)
++|+++|++ +||+++|+|+.|+||||++.+.... +++..|+++|++ .||.+ +.|++.+.+..
T Consensus 743 L~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~ 821 (891)
T PRK09405 743 LEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAFV 821 (891)
T ss_pred HHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHhC
Confidence 999999998 7999999999999999999986654 556678888887 57777 88999888753
Q ss_pred CCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 666 LLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 666 ~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+.+++++|+ |.|+.+|++++|+++||||+++|++++++++.
T Consensus 822 ----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La 862 (891)
T PRK09405 822 ----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALA 862 (891)
T ss_pred ----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 568999999 99999999999999999999999999999984
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=5.6e-75 Score=678.79 Aligned_cols=548 Identities=18% Similarity=0.196 Sum_probs=441.8
Q ss_pred HHHHHHHHHHHHHHhHhc-CC------CCCCCcccHHHHHHHHhc-ccC-----CCCcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-TE------KSLKSSLAAVELTVALHH-VFH-----APVDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~------Gh~~sslg~vel~~aL~~-vf~-----~p~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.++++..+|..++.++.+ +. ||+++++|++++..+||. +|+ ..+| +|++.||.+ |+-..+.|+
T Consensus 89 e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 167 (896)
T PRK13012 89 EERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD-LVYFQPHSAPGIYARAFLEGR 167 (896)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC-EEEECcchHHHHHHHHHHcCC
Confidence 456899999999999974 33 999999999999999985 444 1478 588899999 999999998
Q ss_pred --hhhhHHHHhh---CCCCCCCCCCCCC-CCCcCcCCCcchHHHHHHHHHHHH-------HcCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRKK---DGISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARD-------IKGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~~---ggl~G~~~~~es~-~d~~~~G~~G~~is~A~G~AlA~~-------l~g~~~~VvaviGDGal~~G 229 (721)
.+++.++||. +|+++||++...| +..|.||++|+|++.|+|+|++.| ....+++|+|++|||+++||
T Consensus 168 l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg 247 (896)
T PRK13012 168 LSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEP 247 (896)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccH
Confidence 7789999997 4689999886544 577999999999999999999988 34567999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
.+|||+..|++++ .|||+|+|+|+++ .+.++-...+.++ ++
T Consensus 248 ~~~eA~~~A~~~~LdNLi~ivD~N~~~--------lDG~v~~~~~~~~---------------------------~l--- 289 (896)
T PRK13012 248 ESIAALSLAAREGLDNLVFVINCNLQR--------LDGPVRGNGRIIQ---------------------------EL--- 289 (896)
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCcc--------ccCccccccccch---------------------------HH---
Confidence 9999999999999 7999999999984 2333321111011 11
Q ss_pred HHHHhhcccCCCccceeeeeCceEEecc-------------------------C--------------------------
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------D-------------------------- 337 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~v-------------------------d-------------------------- 337 (721)
..+|+++||+++.++ |
T Consensus 290 -------------~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 290 -------------EALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred -------------HHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 235677777777432 6
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC------------
Q 004968 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------------ 388 (721)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------------ 388 (721)
|||+++|.+|++++++. .++|++|.++|+||+|.+.+.+ +..++|+..
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e--~~~~~H~~~~l~~e~~~~~r~ 433 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGE--GRMTTHQQKKLDVEALKAFRD 433 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccC--CCcccccCCCCCHHHHHHHHH
Confidence 99999999999988864 4689999999999999984422 477888731
Q ss_pred --------------CC---CC---------------C-C-C--------CC---------------CCcccHHHHHHHHH
Q 004968 389 --------------SD---SN---------------S-L-P--------FG---------------NYSRTYDDCFIEAL 411 (721)
Q Consensus 389 --------------~f---~~---------------g-~-~--------~~---------------~~~~~~~~~~~~~L 411 (721)
|| +. + - + ++ ....+.+.+|+++|
T Consensus 434 ~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L 513 (896)
T PRK13012 434 RFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRML 513 (896)
T ss_pred HcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHH
Confidence 12 00 0 0 0 00 02246789999999
Q ss_pred HHHHHc---CCCeEEEecCCCCccCh-------------------------HHHHHhCCCcEeeccccHHHHHH--HHHH
Q 004968 412 VMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSAG 461 (721)
Q Consensus 412 ~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~fp~R~~d~GIaE~~~v~--~AaG 461 (721)
.++++. .++||.+++|+..++|+ ..|+++||+|||++||+||+|++ +|+|
T Consensus 514 ~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG 593 (896)
T PRK13012 514 GNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAA 593 (896)
T ss_pred HHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHH
Confidence 999987 89999999999977766 23557899999999999999999 8898
Q ss_pred HHhC----CCeeEEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCC
Q 004968 462 LACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD 535 (721)
Q Consensus 462 lA~~----G~~p~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd 535 (721)
+|++ |++||+.+|++| .+|++||+++.++++..+|+++.+++|. +|.+|+|||..+|++++|.+||++|+.|+|
T Consensus 594 ~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PAD 673 (896)
T PRK13012 594 TSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAF 673 (896)
T ss_pred hhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCC
Confidence 8777 679999999999 7999999999999999999999999998 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----CCCCEEEEecCCCcccccCCCCCCcceecCceEEEE---eCCcEEEEEechhhHHHHHHHH
Q 004968 536 EDELVDMVATVASI-----DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLV---EGKDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 536 ~~E~~~~l~~a~~~-----~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~---eG~dv~Iva~Gs~v~~al~Aa~ 607 (721)
+.|+..+++.++++ .+.|+|||+.|++.....+|......+..|+ ++++ +|.+++|+++|+++++|++|++
T Consensus 674 a~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe 752 (896)
T PRK13012 674 AYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAAR 752 (896)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHH
Confidence 99999999998743 2579999999988643234432123344555 6663 4679999999999999999999
Q ss_pred HHHhC-CCCeEEeecCccccccHHHHH-------------------HHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCC
Q 004968 608 LLSKL-GIDVTVADARFCKPLDIKLVR-------------------ELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGL 666 (721)
Q Consensus 608 ~L~~~-Gi~v~VId~~~l~PlD~e~i~-------------------~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~ 666 (721)
+|+++ ||+++|+|+.|++|||++.+. +++.. ...+|+++++.. .|++.+.+..
T Consensus 753 ~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~~~- 826 (896)
T PRK13012 753 LLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRAFV- 826 (896)
T ss_pred HHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHHhC-
Confidence 99999 999999999999999999772 22222 235566665432 4555555432
Q ss_pred CCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 667 LDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 667 ~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
+.+++++|+ |.|+.+|++++|+++||+|+++|+++++++|..
T Consensus 827 ---~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~ 868 (896)
T PRK13012 827 ---PARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALAD 868 (896)
T ss_pred ---CCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 457889998 999999999999999999999999999998843
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=3.1e-77 Score=603.36 Aligned_cols=270 Identities=53% Similarity=0.853 Sum_probs=199.9
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
|++|++|.|||+|+.+||++||+|||++|++.++++|||++||||+|||++|||||||.|+|+||||+|||+|+||||||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc
Q 004968 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (721)
Q Consensus 162 r~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~ 241 (721)
|+++|.|+||++|++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||||++||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCc
Q 004968 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (721)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (721)
+.|++||+|||+|+ |++|+|+++++|++++.++.|+++|+..+.+.+.+ .++.+..+++++.++.+ .+
T Consensus 161 ~~~liVILNDN~mS--------Is~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~-- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEMS--------ISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP-- 228 (270)
T ss_dssp T-SEEEEEEE-SBS--------SSB--SSHCCC-----------------------------------------------
T ss_pred CCCEEEEEeCCCcc--------cCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH--
Confidence 99999999999994 78999999999999999999999999999999877 67788888999999987 42
Q ss_pred cceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 322 ~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
.+||++||+|+||+||||+++|+++|+++|+. ++|++|||.|
T Consensus 229 -~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 -NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp -CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred -HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 89999999999999999999999999999994 8999999998
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-69 Score=545.85 Aligned_cols=304 Identities=35% Similarity=0.553 Sum_probs=289.7
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHH
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ 479 (721)
..+++++|+++|.+++++|++||+++||+.+++++..|.++||+||||+||+||.|+|+|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 480 -RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 480 -ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
|+||||++++|++++||.++++++|+ +|+||+|||..+|+++||.+||++|++|+|+.|++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999975 79999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
+.|...+.. + +..++.|++||++++|+|+|++||++|.|+..+++||+.|+++||++.|||+.+|||+|++++.+.++
T Consensus 165 l~R~~~p~~-~-~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~ 242 (312)
T COG3958 165 LGRGKVPVV-V-DEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAAR 242 (312)
T ss_pred ecCCCCCce-e-cCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHh
Confidence 999774421 2 23358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 638 NHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 638 ~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+++.|||+|||+ .||+|+.|++.+++++ +.+++++|+||+|+.+|+..+|+++||||+++|++++++++
T Consensus 243 ~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 243 ETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 999999999998 6999999999999987 68999999999999999999999999999999999998864
No 22
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=4.7e-60 Score=508.53 Aligned_cols=307 Identities=19% Similarity=0.280 Sum_probs=270.5
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
+.+++++|+++|.+++++||+++++++|++.++| +++|+++||+ ||||+||+||+|+++|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 3688999999999999999999999999975555 6899999999 999999999999999999999999999985
Q ss_pred cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcC-CCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVG-SDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G-~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
|+.|++|+||||+|++|++ ++||+++ ++|+.| .+|+|||+..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 6788999999999999988 5566665 566644 79999977776 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCccc-ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
+|++ .++|+|||+++..+.. .+++. +.+.+++||+.++++|+|++||+||.|+++|++|++.|+++||+++|||++|
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~~-~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIPD-NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCCC-CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 9986 6899999966554321 12332 3567889999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGHH 701 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~-~g~~~~l~~~~gl~~~~ 701 (721)
|||||+++|.++++++++|||+|||. .||||++|++++.+++|...+.++++++++|.|++ +|..+++ +|||+++
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~~ 314 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPAQ 314 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHHH
Confidence 99999999999999999999999998 79999999999999985222568999999999998 5666554 5999999
Q ss_pred HHHHHHHHhhcch
Q 004968 702 IAATALSLLGRTR 714 (721)
Q Consensus 702 I~~~i~~~l~~~~ 714 (721)
|++++++++..+|
T Consensus 315 I~~~i~~~l~~~~ 327 (327)
T CHL00144 315 IIEAVEQIITNKK 327 (327)
T ss_pred HHHHHHHHHhccC
Confidence 9999999986654
No 23
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=6.5e-59 Score=500.46 Aligned_cols=306 Identities=25% Similarity=0.358 Sum_probs=274.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty 474 (721)
..+|+++|+++|.+++++||+++++++|++.++| +++|+++| |+||||+|||||+|+++|+|||++|+|||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 3589999999999999999999999999986666 38899999 999999999999999999999999999999998
Q ss_pred H-hhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 S-AFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 s-~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
+ +|++||||||+|++|++ ++|++++... |..|.+|+|||+..| ++||++|||+|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 78999999999999988 4677766544 556889999988888 99999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
|++ .++|+||++++..+... ++++ +.+++++||++++++|+|++||+||+++..|++|++.|+++||+++|||+++|
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE-EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC-CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 986 58999998876543321 2332 24678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGHHI 702 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~~~I 702 (721)
+|||+++|.+++++++.|||||||. .||||++|++++.++++.+.+.++++++.+|.|++.| ++++++|| ++++|
T Consensus 239 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~I 315 (327)
T PRK09212 239 RPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEEDI 315 (327)
T ss_pred CCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHHH
Confidence 9999999999999999999999998 7999999999999987644456899999999998865 79999998 99999
Q ss_pred HHHHHHHhhc
Q 004968 703 AATALSLLGR 712 (721)
Q Consensus 703 ~~~i~~~l~~ 712 (721)
++++++++++
T Consensus 316 ~~~i~~~~~~ 325 (327)
T PRK09212 316 IEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHhh
Confidence 9999998854
No 24
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=8.1e-58 Score=495.67 Aligned_cols=308 Identities=24% Similarity=0.333 Sum_probs=269.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
..+|+++|+++|.+++++||+++++++|++.+.+ +++|.++| |+||||+|||||+|+++|+|||++|+|||+++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999976555 46777777 99999999999999999999999999999998
Q ss_pred cHhhHHHHHHHHHHHhhcCC--------cceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|+||||+|++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 47789999999999999888 99999998844356 699999888 599999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCC---CCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeec
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPG---YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADA 621 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~---~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~ 621 (721)
|++ .++|+|||+++...... +... .+.+.+++||++++++|+|++||++|+++..|++|++.|+++||+++|||+
T Consensus 184 a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 184 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 985 67999999754332111 1111 113567899999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CH
Q 004968 622 RFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TG 699 (721)
Q Consensus 622 ~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~ 699 (721)
+|+||||+++|.+++++++.|||+|||. .||||++|++++.+++|...+.+++++|++|.++ +.+..++.+++ ++
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~---p~~~~le~~~~p~~ 339 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPM---PYAANLERLALPQV 339 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCC---CccHHHHHhhCCCH
Confidence 9999999999999999999999999998 7999999999999998632356899999999755 45677888888 99
Q ss_pred HHHHHHHHHHhhcc
Q 004968 700 HHIAATALSLLGRT 713 (721)
Q Consensus 700 ~~I~~~i~~~l~~~ 713 (721)
++|++++++++.++
T Consensus 340 ~~i~~a~~~~~~~~ 353 (356)
T PLN02683 340 EDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999654
No 25
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=3.6e-57 Score=503.55 Aligned_cols=306 Identities=23% Similarity=0.303 Sum_probs=273.4
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty 474 (721)
..+++++|+++|.+++++|++++++++|++...| .++|.++| |+||||+||+||+|+|+|+|||++|+|||+++|
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~ 220 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFM 220 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4689999999999999999999999999976666 47899999 999999999999999999999999999999985
Q ss_pred -HhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 -SAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 -s~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++|++|+||||+|++| ++++||+|++..+|..+ .|+ ||+++|+++|+++|||+|++|+|+.|++.++++
T Consensus 221 ~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 221 TFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred hHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 7789999999999999 89999999988766655 677 999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
|++ .++|+||+.++..+... ++|..+++.+++||++++|+|+|++||+||+++..|++|++.|+++||+++|||+|||
T Consensus 299 ai~-~~~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 299 AIR-DPNPVIFLENEILYGQSFDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred Hhh-CCCcEEEEechhhcCCCCCCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 985 68999994433222111 2343335678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGHHI 702 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~~~I 702 (721)
+|||+++|.++++++++|||+|||+ .||||++|++++.+++|...+.++++++++|.|.+ ++.++++++| ++++|
T Consensus 378 kPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~~I 454 (464)
T PRK11892 378 RPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVAEV 454 (464)
T ss_pred CcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHHHH
Confidence 9999999999999999999999998 79999999999999986333568999999999875 6789999998 99999
Q ss_pred HHHHHHHhh
Q 004968 703 AATALSLLG 711 (721)
Q Consensus 703 ~~~i~~~l~ 711 (721)
++++++++-
T Consensus 455 v~av~~~~~ 463 (464)
T PRK11892 455 VEAVKAVCY 463 (464)
T ss_pred HHHHHHHhh
Confidence 999998763
No 26
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-56 Score=484.21 Aligned_cols=307 Identities=25% Similarity=0.376 Sum_probs=269.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCC--Cc-cC-hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME--MD-LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~--~~-~~-l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
...+|+++|+++|.+++++||+++++++|++ |+ ++ +++|+++| |+||||+||+||+|+++|+|||++|++||+++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~ 112 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF 112 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe
Confidence 3468999999999999999999999999987 12 33 68999999 99999999999999999999999999999998
Q ss_pred -cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 -PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 -ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
|++|++|++|||+|++|++ ++|++++. ++|.+|.+|+||++..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 7999999999999999986 46666653 44457899999977777 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCccc-ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
++++ .++|+||++|+..... .+....+.+.+++||++++++|+|++||+||+++..|++|++.|+++||+++|||+++
T Consensus 191 ~a~~-~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~ 269 (355)
T PTZ00182 191 AAIR-DPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRS 269 (355)
T ss_pred HHHh-CCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEee
Confidence 9986 5899999988764321 1111122467789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
+||||++.|.+++++++.||||||+. .||||++|++++.++++...+.++++++++|.|++++.. +.+.+.+++++|
T Consensus 270 l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~~i 347 (355)
T PTZ00182 270 LRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKEKV 347 (355)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHHHH
Confidence 99999999999999999999999998 799999999999998753234689999999999987653 677889999999
Q ss_pred HHHHHHHh
Q 004968 703 AATALSLL 710 (721)
Q Consensus 703 ~~~i~~~l 710 (721)
++++.+++
T Consensus 348 ~~~~~~~~ 355 (355)
T PTZ00182 348 VEAAKRVL 355 (355)
T ss_pred HHHHHHhC
Confidence 99998764
No 27
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=1.3e-53 Score=490.58 Aligned_cols=582 Identities=15% Similarity=0.179 Sum_probs=423.1
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCC-C----CcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHA-P----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~-p----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.++++..+|..++.++.+ + +||+++++|++++..+||+ +|+. | +| +|+++||.+ |+...+.|+
T Consensus 75 e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD-~VlSKGHasp~lYA~L~l~G~ 153 (885)
T TIGR00759 75 ERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD-LVFFQGHAAPGIYARAFLEGR 153 (885)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEECCcHHHHHHHHHHHcCC
Confidence 456679999999999974 4 6999999999999999995 4552 2 68 488899999 898999997
Q ss_pred --hhhhHHHHh---hCCCCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRK---KDGISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~---~ggl~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G 229 (721)
.+++.++|+ .+++++||++.. +.+..|.||++|+|++.|+|+|++.|+ +..+++|+|++|||+++||
T Consensus 154 ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG 233 (885)
T TIGR00759 154 LTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEP 233 (885)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccH
Confidence 778999999 356899998765 334679999999999999999999996 5678999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc-Ccch-----
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI-GRGM----- 302 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~-g~~~----- 302 (721)
.+|||+..|++++ .|||+|+|+|+++ ++.++....+.+++ .-.+++..++.+.+.. |...
T Consensus 234 ~swEA~~~Aa~~kLdNLi~IVD~N~~q--------lDG~v~~~~~i~e~-----le~~F~a~GW~Vi~V~wg~~wd~lf~ 300 (885)
T TIGR00759 234 ESKGAITFAAREKLDNLTFVINCNLQR--------LDGPVRGNGKIIQE-----LESLFRGAGWNVIKVLWGSEWDALLA 300 (885)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCc--------cCCccccccccchh-----HHHHHHhcCCEEEEEecCccchHhhc
Confidence 9999999999999 7999999999984 23232211111111 1223344445444431 1000
Q ss_pred ----HHHHHHHHHHhhc---------------ccCCC---ccceeeeeC---ceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 303 ----HEWAAKVDEYARG---------------MIGPQ---GSTLFEELG---LYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 303 ----~~~~~~~~~~~~~---------------~~~~~---~~~l~ea~G---~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
..+.+++++.+.+ -+-+. ...+.+.+. +... ..+|||+++|.+|++++++. .+
T Consensus 301 ~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l-~rgGHD~~~I~~A~~~A~~~-~g 378 (885)
T TIGR00759 301 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWAL-NRGGHDPRKVYAAYAAAQEH-KG 378 (885)
T ss_pred CCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhc-cCCCCCHHHHHHHHHHHHhC-CC
Confidence 0111111111111 00000 000011000 0000 23799999999999888764 36
Q ss_pred CCEEEEEEEeccCCCcccccccccccccccCC--------------------------C---CCC---------------
Q 004968 358 GPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--------------------------D---SNS--------------- 393 (721)
Q Consensus 358 ~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~--------------------------f---~~g--------------- 393 (721)
+|++|.++|+||+|.+++.+ +..++|+..+ | +.+
T Consensus 379 rPTvIlA~TvKG~G~~~~~e--~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lg 456 (885)
T TIGR00759 379 QPTVILAKTIKGYGMGDAAE--SRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALG 456 (885)
T ss_pred CCEEEEEeeeecCCCChhhC--CCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhC
Confidence 89999999999999984433 5789997421 1 000
Q ss_pred ----------CCC--C-------------CCcccHHHHHHHHHHHHHHc---CCCeEEEecCCCCccChHHHHHh-----
Q 004968 394 ----------LPF--G-------------NYSRTYDDCFIEALVMEAEK---DKDIVVVHAGMEMDLSLQLFQEK----- 440 (721)
Q Consensus 394 ----------~~~--~-------------~~~~~~~~~~~~~L~~~~~~---d~~iv~i~ad~~~~~~l~~f~~~----- 440 (721)
.++ + ....+.+.+|++.|..+++. .++||-|.+|...++||+++..+
T Consensus 457 g~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~ 536 (885)
T TIGR00759 457 GYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYS 536 (885)
T ss_pred CCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccC
Confidence 000 0 12357789999999988864 25699999999999999776543
Q ss_pred --------------------CCCcEeeccccHHHHHH--HHHHHHhC--C--CeeEEEecHhh-HHHHHHHHHHHhhcCC
Q 004968 441 --------------------FPERYFDVGMAEQHAVT--FSAGLACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQQR 493 (721)
Q Consensus 441 --------------------fp~R~~d~GIaE~~~v~--~AaGlA~~--G--~~p~~~tys~F-l~ra~dqi~~~~a~~~ 493 (721)
-.+|.++.||+|.++++ +|+|.|.+ | +.||.-.|++| +||..|.+ ..++.|.
T Consensus 537 ~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d~~ 615 (885)
T TIGR00759 537 PHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAADQR 615 (885)
T ss_pred CCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhhhc
Confidence 13699999999999988 56777665 6 78999999999 99999976 5778899
Q ss_pred cceEEEEcCCCC-c-CCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecC--CCcccc
Q 004968 494 LPVRFVITSAGL-V-GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR--GAIVRT 566 (721)
Q Consensus 494 lpVv~v~~~~G~-~-G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r--~~~~~~ 566 (721)
..-.+++..+|. + ...|-+||...-..+...+||++-|.|+...|+..++..++.+ ....+|++++- .++...
T Consensus 616 argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp 695 (885)
T TIGR00759 616 ARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQP 695 (885)
T ss_pred CCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCC
Confidence 999999999998 2 4568899988877788899999999999999999999999874 34578888776 333222
Q ss_pred cCCCCCCccee-cCceEEEEeC------CcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHH------
Q 004968 567 DLPGYRGIPIE-IGKGKVLVEG------KDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLV------ 632 (721)
Q Consensus 567 ~~p~~~~~~~~-~gk~~vl~eG------~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i------ 632 (721)
..|+ +..-. +...|.++++ .+|.|+++|+.++++++|+++|+++ |+.++|+++.+..-|..+..
T Consensus 696 ~~p~--~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n 773 (885)
T TIGR00759 696 PMPE--GAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWN 773 (885)
T ss_pred CCCc--chHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHH
Confidence 2221 11111 2234666652 4799999999999999999999986 99999999999888776633
Q ss_pred -------------HH-HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCC
Q 004968 633 -------------RE-LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 698 (721)
Q Consensus 633 -------------~~-l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~ 698 (721)
.+ +......||++-|... -+...|..++ +.++..+|. |.|+.+++.++++++|++|
T Consensus 774 ~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~-~~~~qir~~v--------p~~~~~LGt-DgFGrSdtr~~lr~~fevD 843 (885)
T TIGR00759 774 LLHPTETPRVSYVAQVLNEADAPVIASTDYVR-AFAEQIRPYV--------PRKYVTLGT-DGFGRSDTRENLRHFFEVD 843 (885)
T ss_pred hcCCCCCccccHHHHHhccCCCCEEEEccchh-hhHHHHhhhc--------CCCceEecC-CCCCCCCCHHHHHHHcCCC
Confidence 11 1122346777777631 1233333322 457888997 9999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004968 699 GHHIAATALSLLG 711 (721)
Q Consensus 699 ~~~I~~~i~~~l~ 711 (721)
+++|+.++++.|.
T Consensus 844 a~~IV~AAL~aL~ 856 (885)
T TIGR00759 844 AKSVVLAALYALA 856 (885)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999884
No 28
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-53 Score=429.98 Aligned_cols=305 Identities=26% Similarity=0.392 Sum_probs=272.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCC---CccCh-HHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEEe-c
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-y 474 (721)
.++++|++++|.++|++|++|+++++|++ |.++. .+++++|++ |+||++|+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 57899999999999999999999999986 23443 789999975 999999999999999999999999999998 9
Q ss_pred HhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
.+|+..|+|||+|.+++ ..+|+++....+|..+ .|.+|++..+ +||.++||++|++|++|.|++++|+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999985 3789999987766554 5789999998 899999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCcc--cccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 547 ASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
++ +++||+|+.++..+. ..++|+ ++|.+|+||+.+.|+|+|+|||+||.|++.+++||++|+++||+++|||+|||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~-~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl 237 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE-EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC-CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 86 899999999987653 246774 47899999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~ 703 (721)
+|||.++|.++++|++++++|||.. ++|+|++|++.+.++.|.+.+.++.+++.+|...+.. ..+.+.+-.+++.|.
T Consensus 238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~--~~lE~~~lp~~~~I~ 315 (324)
T COG0022 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYS--AALEKAYLPNPERIV 315 (324)
T ss_pred CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcc--hhHHhhhCCCHHHHH
Confidence 9999999999999999999999887 8999999999999998866677889999999887643 234445667999999
Q ss_pred HHHHHHhh
Q 004968 704 ATALSLLG 711 (721)
Q Consensus 704 ~~i~~~l~ 711 (721)
+++++++.
T Consensus 316 ~av~~v~~ 323 (324)
T COG0022 316 AAVKKVLE 323 (324)
T ss_pred HHHHHHhh
Confidence 99999874
No 29
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.2e-44 Score=355.14 Aligned_cols=307 Identities=22% Similarity=0.335 Sum_probs=262.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCC---CccCh-HHHHHhCC-CcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
+..+.++|+.++|.+++++|+++++++++++ |+.++ .++.++|. .|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3478899999999999999999999999976 44555 67888885 5999999999999999999999999999996
Q ss_pred -cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 -ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
-+.|...++|||+|.+++ +++|++|.+.. |....-|++|++.+. +|+.++||++|++|.+++|.+++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 689999999999999875 47888888654 332235789999998 8999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcc-cccCCC---CCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 545 TVASIDDRPVCFRYPRGAIV-RTDLPG---YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~p~---~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
.|++ +++|+++....-.+- ..++++ .+++.+++||+++.|+|++||||++..++..|++||+.|.++|++++|||
T Consensus 191 aAIR-d~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVIn 269 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVIN 269 (359)
T ss_pred Hhcc-CCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEe
Confidence 9985 899999977543321 123332 23577899999999999999999999999999999999999999999999
Q ss_pred cCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 621 ARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 621 ~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
+|+|+|||.++|..+++++.++++||++. .+|+|+++++.+.++.|...+.++.++...|.+.+... ++-+..-.++
T Consensus 270 lrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~--~lE~~a~p~~ 347 (359)
T KOG0524|consen 270 LRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK--TLEDWAVPQP 347 (359)
T ss_pred eeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch--hhHhhcCCCH
Confidence 99999999999999999999999999998 79999999999999876333456778887888777643 3445566789
Q ss_pred HHHHHHHHHHh
Q 004968 700 HHIAATALSLL 710 (721)
Q Consensus 700 ~~I~~~i~~~l 710 (721)
++|+.++++++
T Consensus 348 ~~iV~Avk~~~ 358 (359)
T KOG0524|consen 348 ADIVTAVKKLC 358 (359)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 30
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=8.9e-41 Score=385.70 Aligned_cols=515 Identities=14% Similarity=0.115 Sum_probs=374.6
Q ss_pred CCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchH---HHHHHHhC-----ch----hh--hH-HHHhhC---CCC
Q 004968 117 TEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTG-----RR----SL--IH-TLRKKD---GIS 176 (721)
Q Consensus 117 ~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~---y~h~~ltG-----r~----~~--~~-~~r~~g---gl~ 176 (721)
--||.|.+-|+-.+.++|.++-. ..-|. +|.+.||.+ |+...|.| .. ++ |. .+|||+ |++
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~ 127 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIP 127 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcC
Confidence 35999999999877777766533 22354 568999998 99999999 21 22 55 578875 477
Q ss_pred CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHHhhhcC-CCEEEEEECC
Q 004968 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDS 252 (721)
Q Consensus 177 G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~A~~~~-~plivIv~dN 252 (721)
|||.+ +.|+....+|.+|++++.|+|+|++ +++..|+|++|||+.++|. .|++.+++...+ .+|+.|+++|
T Consensus 128 sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~N 202 (785)
T PRK05261 128 SHAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLN 202 (785)
T ss_pred CCCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEec
Confidence 77764 5677777899999999999999965 6789999999999999998 599999888887 8999999999
Q ss_pred CCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce
Q 004968 253 RHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY 331 (721)
Q Consensus 253 ~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~ 331 (721)
+++ +.||.... + +..++ ..+|++|||.
T Consensus 203 g~~Is~pt~~~~-------~-----------------------------~~e~l----------------~~rf~g~Gw~ 230 (785)
T PRK05261 203 GYKIANPTILAR-------I-----------------------------SDEEL----------------EALFRGYGYE 230 (785)
T ss_pred CCcCCCCccccc-------c-----------------------------CcHhH----------------HHHHHHCCCe
Confidence 984 22221000 0 00111 3468899999
Q ss_pred EEeccCCCCHHHHHHH--------HH-------HHHhc-CCCCCE--EEEEEEeccCCCcc------ccccccccccccc
Q 004968 332 YIGPVDGHNIEDLISV--------LQ-------EVASL-GSMGPV--LVHVVTEENRRAED------TQKSEAIEKQQEG 387 (721)
Q Consensus 332 ~~g~vdGhd~~~l~~a--------l~-------~a~~~-~~~~P~--lI~v~T~kg~G~~~------ae~~~~~~~~Hg~ 387 (721)
.+ .|||||++++.++ ++ +||.. ...+|+ +|+++|.||+|-+. .| +..+.|++
T Consensus 231 ~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e---Gs~raHqv 306 (785)
T PRK05261 231 PY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE---GSWRAHQV 306 (785)
T ss_pred eE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC---CCchhhcC
Confidence 98 6899999887766 44 33321 015799 99999999999652 34 35677887
Q ss_pred CC-------------------------C-CCCCC--------------------------CC----C-------------
Q 004968 388 AS-------------------------D-SNSLP--------------------------FG----N------------- 398 (721)
Q Consensus 388 ~~-------------------------f-~~g~~--------------------------~~----~------------- 398 (721)
+. | ..|+. .+ +
T Consensus 307 PL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g 386 (785)
T PRK05261 307 PLANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPG 386 (785)
T ss_pred CCCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCC
Confidence 41 2 11110 00 0
Q ss_pred --CcccHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHH-----------------hCCCcEeeccccHHHHHHH
Q 004968 399 --YSRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE-----------------KFPERYFDVGMAEQHAVTF 458 (721)
Q Consensus 399 --~~~~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~-----------------~fp~R~~d~GIaE~~~v~~ 458 (721)
.....+ ++++.|.++++.+|+ ++++++|...|..+....+ ..-+|+++ |++|++|.++
T Consensus 387 ~~~~~atr-~~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~ 464 (785)
T PRK05261 387 AVMAEATR-VLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGW 464 (785)
T ss_pred ccccccHH-HHHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHH
Confidence 001233 399999999999999 8899999998888743221 12379999 9999999999
Q ss_pred HHHHHhCCCeeEEEecHhhH---HHHHHHHHHHhh----------cCCcceEEEEcCCCC-cCCCCCCcCc---HHHHHH
Q 004968 459 SAGLACGGLKPFCIIPSAFL---QRAYDQVVNDVD----------QQRLPVRFVITSAGL-VGSDGPTQCG---AFDITF 521 (721)
Q Consensus 459 AaGlA~~G~~p~~~tys~Fl---~ra~dqi~~~~a----------~~~lpVv~v~~~~G~-~G~dG~TH~~---~~dia~ 521 (721)
+.|+++.|.++++++|..|. ..++.|+.-..- +..++ ++.++... .|+||+|||. ++.++-
T Consensus 465 ~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~ 542 (785)
T PRK05261 465 LEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVAN 542 (785)
T ss_pred HHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHh
Confidence 99999999999999999998 788888733322 23343 55567677 7999999999 999888
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEE--e-----CCcEEE
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLV--E-----GKDVAL 592 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~--e-----G~dv~I 592 (721)
++. |++.|+.|+|.+|+..+++.|++..++|.+|.++|++.+.. ...+. ..+.-| ++++. + +.|++|
T Consensus 543 ~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~--~~~~~a~~~~~kG-ayi~~~a~~~~~~~pDvvL 618 (785)
T PRK05261 543 KKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQW--LSMDEARKHCTKG-LGIWDWASNDDGEEPDVVL 618 (785)
T ss_pred cCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCccc--CChHHHHHhccCc-eEEEEeccCCCCCCCCEEE
Confidence 888 99999999999999999999998888999999999985432 11110 112222 45555 2 359999
Q ss_pred EEechhhHH-HHHHHHHHHhC--CCCeEEeecCccccc------------cHHHHHHHhccCCeEEEEcCCCCCChHHHH
Q 004968 593 LGYGAMVQN-CLKARALLSKL--GIDVTVADARFCKPL------------DIKLVRELCQNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 593 va~Gs~v~~-al~Aa~~L~~~--Gi~v~VId~~~l~Pl------------D~e~i~~l~~~~~~vvvvEe~~~gG~gs~v 657 (721)
+|+|+++.. |++|++.|+++ ||+++||++. .+| +.+.+.++.-..+.||+.= -|..+.|
T Consensus 619 ~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~----hgyp~~i 692 (785)
T PRK05261 619 ACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF----HGYPWLI 692 (785)
T ss_pred EEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe----CCCHHHH
Confidence 999999988 99999999999 9999999994 433 4566777765555555432 3445556
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
...+-... ...+++..|... =+..-++-+++-..++|--+++..+.+.+
T Consensus 693 ~~l~~~r~---~~~~~~v~gy~e-~g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 693 HRLTYRRT---NHHNFHVRGYKE-EGTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred HHHhccCC---CCCccEEEEEec-CCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55554431 123555556532 23344688999999999988888777653
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1e-40 Score=393.56 Aligned_cols=537 Identities=14% Similarity=0.117 Sum_probs=362.4
Q ss_pred ccCCCccccCCCCHHHHHHHHHHH-HHHHHHhH--hc-CCCCCCCcccHHHHHHHHhcccC-----CCCcEEEecCCchH
Q 004968 83 DLVENPLRLKSLTIKELKQLAVEI-RSELSSIV--SK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQT 153 (721)
Q Consensus 83 ~~i~~p~~~~~~~~~~l~~la~ei-R~~~~~~~--~~-~~Gh~~sslg~vel~~aL~~vf~-----~p~D~iv~d~GH~~ 153 (721)
++|.++.. .++.+++.++.+.+ |.+..+.. .+ .++-..+..|+-.+.++|....+ .++|+++. ..||.
T Consensus 177 ~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vig-maHRg 253 (924)
T PRK09404 177 QRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIG-MAHRG 253 (924)
T ss_pred HHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEe-cCcCc
Confidence 34543333 67777777665544 33333221 22 23434467787445554433211 35666553 46999
Q ss_pred HHHHHHh--CchhhhHHHHhhCCC--------C-------CCCC----CCCCCCC--CcCcCCCcchHHHHHHHHHHHHH
Q 004968 154 YAHKILT--GRRSLIHTLRKKDGI--------S-------GYTS----RSESEYD--PFNAGHGCNSVSAGLGMAVARDI 210 (721)
Q Consensus 154 y~h~~lt--Gr~~~~~~~r~~ggl--------~-------G~~~----~~es~~d--~~~~G~~G~~is~A~G~AlA~~l 210 (721)
..|.+.. |...+ ..+.++.|. + |++. +..+.|. .+..+|+|...|+|+|+|.|.++
T Consensus 254 rlnvLa~v~G~~~~-~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~ 332 (924)
T PRK09404 254 RLNVLVNVLGKPPR-DLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQD 332 (924)
T ss_pred hHHHHHHhcCCCHH-HHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHH
Confidence 8886663 65221 122333222 1 1111 1122221 22348999999999999999999
Q ss_pred cCCC------CeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhh
Q 004968 211 KGKR------ECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280 (721)
Q Consensus 211 ~g~~------~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~ 280 (721)
++.+ ..+|+++||||+ .+|.+||+||+|+.|++| +|+||.||++. +.| +.. +.++
T Consensus 333 ~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT-------~~~-------~~~s 397 (924)
T PRK09404 333 RRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTT-------SPP-------DDRS 397 (924)
T ss_pred hcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-Eee-------CHH-------Hhcc
Confidence 8877 789999999998 699999999999999987 99999999983 222 110 0000
Q ss_pred chHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCC
Q 004968 281 SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMG 358 (721)
Q Consensus 281 ~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~ 358 (721)
. .+ -..+++++|+..+ .|||+|++++.++.+.|.+. +.++
T Consensus 398 ~-----------------------------~~--------~sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~g 439 (924)
T PRK09404 398 T-----------------------------PY--------CTDVAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKK 439 (924)
T ss_pred c-----------------------------hh--------HHHHHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCc
Confidence 0 00 0235678899988 89999999998888766432 2579
Q ss_pred CEEEEEEEeccCCCccccccc--cc---ccc--cccC-------------------------------------------
Q 004968 359 PVLVHVVTEENRRAEDTQKSE--AI---EKQ--QEGA------------------------------------------- 388 (721)
Q Consensus 359 P~lI~v~T~kg~G~~~ae~~~--~~---~~~--Hg~~------------------------------------------- 388 (721)
|++|++.|.+-+|+...+... .+ ..| |.-+
T Consensus 440 PvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~ 519 (924)
T PRK09404 440 DVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519 (924)
T ss_pred CEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999998875433100 00 011 1000
Q ss_pred -----CC------------CCCCC-------------CC----------------------CCcccHHHHHHHHHHHHHH
Q 004968 389 -----SD------------SNSLP-------------FG----------------------NYSRTYDDCFIEALVMEAE 416 (721)
Q Consensus 389 -----~f------------~~g~~-------------~~----------------------~~~~~~~~~~~~~L~~~~~ 416 (721)
.+ .||-+ .+ .....|..|...++..+++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~ 599 (924)
T PRK09404 520 DWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLD 599 (924)
T ss_pred cccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHh
Confidence 00 01100 00 0124688999999999999
Q ss_pred cCCCeEEEecCCCCcc--------------C----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCee--EEEe-c
Q 004968 417 KDKDIVVVHAGMEMDL--------------S----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKP--FCII-P 474 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~--------------~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p--~~~t-y 474 (721)
+|++|+++++|++.|| | ++++.++| |.|++|++|+|.+++|++.|+|+.|.+| +++. |
T Consensus 600 ~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qf 679 (924)
T PRK09404 600 EGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQF 679 (924)
T ss_pred CCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 9999999999997533 1 36777888 7899999999999999999999999975 9987 9
Q ss_pred HhhHH---HHHHHHHHHh-hcC--CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccC--CCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQ---RAYDQVVNDV-DQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL--PNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~---ra~dqi~~~~-a~~--~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~i--Pnl~V~~Psd~~E~~~~l~~a 546 (721)
.+|+. .++||+++.+ ++. ..++++...++ ..|..+..|++..+ +|+..+ |||+|+.|++|.|++++|+.+
T Consensus 680 gDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q 757 (924)
T PRK09404 680 GDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQ 757 (924)
T ss_pred cccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHH
Confidence 99985 7799998886 443 45777777765 33544455555666 787655 799999999999999999987
Q ss_pred HHhC-CCCEEEEecCCCcccc-------cCCCCCCcceecCceEEEEeCCcE--EEEEechhhHHHHHHHHHHHhCCCCe
Q 004968 547 ASID-DRPVCFRYPRGAIVRT-------DLPGYRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDV 616 (721)
Q Consensus 547 ~~~~-~~P~~ir~~r~~~~~~-------~~p~~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v 616 (721)
+.++ .+|++|..|+..+... +++.. .+...++++. .+++++| +|||||.+++.+++|++.+. ..++
T Consensus 758 ~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~-~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v 833 (924)
T PRK09404 758 ALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEG-SFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDV 833 (924)
T ss_pred HhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCC-Cceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCE
Confidence 5445 4999999998764311 12211 1333455554 5677899 79999999999999998553 3499
Q ss_pred EEeecCccccccHHHHHHHhccC---CeEEEE-cCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc
Q 004968 617 TVADARFCKPLDIKLVRELCQNH---TFLITV-EEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE 684 (721)
Q Consensus 617 ~VId~~~l~PlD~e~i~~l~~~~---~~vvvv-Ee~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~ 684 (721)
+|||+++|.|||.++|.++++++ +.+|+| ||....|...+|...+...- ....+++-+|-|..-.+
T Consensus 834 ~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~--~~~~~~~y~gR~~~asp 903 (924)
T PRK09404 834 AIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL--PEGQKLRYAGRPASASP 903 (924)
T ss_pred EEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHh--ccCCeeEEECCCCcCCC
Confidence 99999999999999999988876 245555 55557888888877765321 11235666776544333
No 32
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1.3e-38 Score=350.23 Aligned_cols=583 Identities=17% Similarity=0.196 Sum_probs=411.2
Q ss_pred HHHHH-HHHHHHHHHHhHh-------cCCCCCCCcccHHHHHHHHhcc-cCCC-----CcEEEecCCchH---HHHHHHh
Q 004968 98 ELKQL-AVEIRSELSSIVS-------KTEKSLKSSLAAVELTVALHHV-FHAP-----VDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 98 ~l~~l-a~eiR~~~~~~~~-------~~~Gh~~sslg~vel~~aL~~v-f~~p-----~D~iv~d~GH~~---y~h~~lt 160 (721)
+|+.. -.-+|..++.++- +.|||++|+.|.+.+..++|.. |+.+ .|.+.+ .||.+ |+-..|-
T Consensus 76 ~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~-qgHaSPg~yArafLe 154 (887)
T COG2609 76 ELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFF-QGHASPGIYARAFLE 154 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEE-ecCCCchHHHHHHHh
Confidence 44443 3334555555553 2589999999999999888865 5432 487776 79998 8989999
Q ss_pred Cc--hhhhHHHHhhCC---CCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCcc
Q 004968 161 GR--RSLIHTLRKKDG---ISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTM 227 (721)
Q Consensus 161 Gr--~~~~~~~r~~gg---l~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~ 227 (721)
|| .+++..+||..+ ++.||+|.. ..+..|.|++||-|.-.|+=-|.-.|+.. ++++|+||+|||+|.
T Consensus 155 GRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmD 234 (887)
T COG2609 155 GRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMD 234 (887)
T ss_pred ccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccC
Confidence 99 778999999754 999999864 45667899999988888888777766542 478999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc-Ccc----
Q 004968 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI-GRG---- 301 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~-g~~---- 301 (721)
|+-+.+|+..|+..+ .|++||||.|.|. .+.+|-+-++.++++.. -+|..++.+.+.+ |..
T Consensus 235 Epes~gAi~~A~re~LdNlifVincNlQr--------LDgpVrgngkiiqelE~-----~FrgAGW~VikviWg~~wd~l 301 (887)
T COG2609 235 EPESRGAITEAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQELEG-----IFRGAGWNVIKVIWGRRWDEL 301 (887)
T ss_pred CchhhHHHHHHHHhcCCceEEEEecchhh--------cCCcccCCchhHHHHHH-----HhccCCceEEEEEecccHHHH
Confidence 999999999999999 8999999999983 45566655566665431 2355566666532 221
Q ss_pred -----hHHHHHHHHHHhhccc----------------C--CCccceeeeeC---ceEEeccCCCCHHHHHHHHHHHHhcC
Q 004968 302 -----MHEWAAKVDEYARGMI----------------G--PQGSTLFEELG---LYYIGPVDGHNIEDLISVLQEVASLG 355 (721)
Q Consensus 302 -----~~~~~~~~~~~~~~~~----------------~--~~~~~l~ea~G---~~~~g~vdGhd~~~l~~al~~a~~~~ 355 (721)
-..+.+.+++.+.+.. . |....+.+.+. +... .-.|||+..+.+++++|.+.
T Consensus 302 l~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L-~rGGHD~~ki~aA~~~A~~~- 379 (887)
T COG2609 302 LAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL-NRGGHDPEKVYAAFKKAQEH- 379 (887)
T ss_pred hcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-hcCCCCHHHHHHHHHHHhcC-
Confidence 1112223333322211 0 10111111111 0001 24689999999999999985
Q ss_pred CCCCEEEEEEEeccCCCcccccccccccccccCC------------C------CCCCC----------------------
Q 004968 356 SMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS------------D------SNSLP---------------------- 395 (721)
Q Consensus 356 ~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~------------f------~~g~~---------------------- 395 (721)
.++|++|.++|+||.|...+-+ +....|-+.+ | +.++.
T Consensus 380 kg~PtvilA~TIKGyglg~~~e--g~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~a 457 (887)
T COG2609 380 KGRPTVILAKTIKGYGLGEAAE--GKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAA 457 (887)
T ss_pred CCCceEEEEeeeccccCchhhc--ccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHh
Confidence 3589999999999999874333 3455565521 1 00000
Q ss_pred -----------------CC------------CCcccHHHHHHHHHHHHHHcC---CCeEEEecCCCCccChHHHHHh---
Q 004968 396 -----------------FG------------NYSRTYDDCFIEALVMEAEKD---KDIVVVHAGMEMDLSLQLFQEK--- 440 (721)
Q Consensus 396 -----------------~~------------~~~~~~~~~~~~~L~~~~~~d---~~iv~i~ad~~~~~~l~~f~~~--- 440 (721)
++ ....+.+.+|...|.+++++. ++||-|.+|...++||++|..+
T Consensus 458 l~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GI 537 (887)
T COG2609 458 LGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGI 537 (887)
T ss_pred cCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhccc
Confidence 00 123567889999999998843 5799999999988988765432
Q ss_pred -------C---------------CCcEeeccccHHHHHH--HHHHHHhC--C--CeeEEEecHhh-HHHHHHHHHHHhhc
Q 004968 441 -------F---------------PERYFDVGMAEQHAVT--FSAGLACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQ 491 (721)
Q Consensus 441 -------f---------------p~R~~d~GIaE~~~v~--~AaGlA~~--G--~~p~~~tys~F-l~ra~dqi~~~~a~ 491 (721)
| .++++.-||+|.++++ +|+|.++. | +.||.-.|++| +||..|-+ ..+|.
T Consensus 538 y~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~d 616 (887)
T COG2609 538 YNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGD 616 (887)
T ss_pred ccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHh
Confidence 1 3689999999999988 67777765 5 78998889999 99999965 78888
Q ss_pred CCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCC------CEEEEecCCCc
Q 004968 492 QRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR------PVCFRYPRGAI 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~------P~~ir~~r~~~ 563 (721)
|...-.+++..+|. ....|-+|+.....-+-..+||++.|.|+.+.|+..+++.++++--+ -.||++...++
T Consensus 617 q~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~ 696 (887)
T COG2609 617 QDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENY 696 (887)
T ss_pred hhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcC
Confidence 98884444544454 23458888877665566779999999999999999999999875322 35677666665
Q ss_pred ccccCCCCCCcceecCc-eEEEEe-----CCcEEEEEechhhHHHHHHHHHHHh-CCCCeEEeecCccccccHH------
Q 004968 564 VRTDLPGYRGIPIEIGK-GKVLVE-----GKDVALLGYGAMVQNCLKARALLSK-LGIDVTVADARFCKPLDIK------ 630 (721)
Q Consensus 564 ~~~~~p~~~~~~~~~gk-~~vl~e-----G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~~~l~PlD~e------ 630 (721)
+....|.... -.+-| .|.++. +.++.|+++|...++|++|++.|++ .|+.+.|..+.+..-|-.+
T Consensus 697 ~qPamp~gae--~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R 774 (887)
T COG2609 697 PQPAMPEGAE--EGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAER 774 (887)
T ss_pred CCCCCCCcch--hhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHH
Confidence 4433442211 12222 344543 3689999999999999999999988 6999999999997665433
Q ss_pred -------------HHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 631 -------------LVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 631 -------------~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
.+.+.+.....+|++-+... -+.+.|.+++ +.+.+.+|. |.|+.+++..+++++|.+
T Consensus 775 ~n~lhP~~~~~v~yv~~~L~~~~p~Va~tDy~~-~~a~qir~~v--------p~~y~vLGt-dgFGrSdsr~~Lr~~fev 844 (887)
T COG2609 775 WNLLHPTETPRVPYVAQVLNADGPVVAVTDYMK-LFAEQIRAVV--------PQRYRVLGT-DGFGRSDSRENLRRFFEV 844 (887)
T ss_pred HHhcCCCCCCCchHHHHHhccCCCeEEechhhH-hHHHHHhccc--------CCeeEEecc-CCCCccCcHHHHHHHhcc
Confidence 33343443456676666542 1233333322 456788896 999999999999999999
Q ss_pred CHHHHHHHHHHHhh
Q 004968 698 TGHHIAATALSLLG 711 (721)
Q Consensus 698 ~~~~I~~~i~~~l~ 711 (721)
|+..|+.++.+.+.
T Consensus 845 Da~~vv~Aal~~La 858 (887)
T COG2609 845 DAYYVVVAALSALA 858 (887)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999988874
No 33
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=4.8e-41 Score=336.62 Aligned_cols=195 Identities=59% Similarity=0.943 Sum_probs=178.1
Q ss_pred CCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcch
Q 004968 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNS 197 (721)
Q Consensus 118 ~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~ 197 (721)
+||+++++|++|++.+||++|+.|+|+||+|+||++|++++++|+++++.++|++++++|||.+.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 59999999999999999999998999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhh
Q 004968 198 VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (721)
Q Consensus 198 is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (721)
+|+|+|+|+|.++++++++|||++|||++++|++||+|++|+.+++|+++|++||+++ ++++.+.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~--------~~~~~~~------- 145 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS--------ISPNVGT------- 145 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcc--------cCCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999984 1222110
Q ss_pred hhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
...+|+++||.+..++||||++++.++++++++ .+
T Consensus 146 -------------------------------------------~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~~ 180 (195)
T cd02007 146 -------------------------------------------PGNLFEELGFRYIGPVDGHNIEALIKVLKEVKD--LK 180 (195)
T ss_pred -------------------------------------------HHHHHHhcCCCccceECCCCHHHHHHHHHHHHh--CC
Confidence 023567889998866899999999999999987 57
Q ss_pred CCEEEEEEEeccCCC
Q 004968 358 GPVLVHVVTEENRRA 372 (721)
Q Consensus 358 ~P~lI~v~T~kg~G~ 372 (721)
+|++|+++|.||+||
T Consensus 181 ~P~~I~~~T~kg~g~ 195 (195)
T cd02007 181 GPVLLHVVTKKGKGY 195 (195)
T ss_pred CCEEEEEEEecccCc
Confidence 899999999999997
No 34
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.5e-38 Score=369.25 Aligned_cols=434 Identities=15% Similarity=0.127 Sum_probs=306.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCC------CCeEEEEEcCCCc-ccchHHHHHHHhhhcCCCE---EEEEECCCCCcCCC
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGK------RECIVTVISNGTT-MAGQAYEAMSNAGYLDSNM---IVILNDSRHSLHPK 259 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~------~~~VvaviGDGal-~~G~~~Ealn~A~~~~~pl---ivIv~dN~~~s~~t 259 (721)
..+|++...|.|+|.|.|.+.++. +..+|+++||||+ .+|.++|+||+|+.|++|+ |+||.||++. +.|
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg-~tT 391 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG-FTT 391 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEE
Confidence 357999999999999999988765 5788999999997 7999999999999999997 9999999983 222
Q ss_pred ccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCC
Q 004968 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH 339 (721)
Q Consensus 260 ~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh 339 (721)
+.. ..++. ..-..+++++|+..+ .|||+
T Consensus 392 -------~~~-------~~~s~-------------------------------------~~~sd~Ak~ygiP~~-~VDG~ 419 (929)
T TIGR00239 392 -------NPL-------DARST-------------------------------------PYCSDLAKMIQAPIF-HVNAD 419 (929)
T ss_pred -------cHH-------HhcCc-------------------------------------cCHHHHheecCCCEE-EECCC
Confidence 100 00000 001235678898887 89999
Q ss_pred CHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccccccc--cc---ccc--c--------------ccC--------
Q 004968 340 NIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQKSE--AI---EKQ--Q--------------EGA-------- 388 (721)
Q Consensus 340 d~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~~--~~---~~~--H--------------g~~-------- 388 (721)
|++++.++.+.|.+. +.++|++|++.|.+-+|+...+... .+ ..+ | |+.
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999998888766432 2579999999999988875433200 00 000 1 000
Q ss_pred --------------------------------------CCCCCCC-------------CC--------------------
Q 004968 389 --------------------------------------SDSNSLP-------------FG-------------------- 397 (721)
Q Consensus 389 --------------------------------------~f~~g~~-------------~~-------------------- 397 (721)
.+.||-+ .+
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~ 579 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAM 579 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHH
Confidence 0001100 00
Q ss_pred ---CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc-----------------C-hHHHHHhC-CCcEeeccccHHHH
Q 004968 398 ---NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-----------------S-LQLFQEKF-PERYFDVGMAEQHA 455 (721)
Q Consensus 398 ---~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~-----------------~-l~~f~~~f-p~R~~d~GIaE~~~ 455 (721)
....+|.+|...++.+++++|++|+++++|++.|+ + +.++.++| |.|++|++|+|.++
T Consensus 580 ~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~ 659 (929)
T TIGR00239 580 AAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESV 659 (929)
T ss_pred hcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHH
Confidence 01146889999999999999999999999997542 1 36777788 78999999999999
Q ss_pred HHHHHHHHhCCCeeE--EEe-cHhhHH---HHHHHHHHH-hhcC--CcceEEEEcCCCCcCCCCCCcCcHHHHHHH--cc
Q 004968 456 VTFSAGLACGGLKPF--CII-PSAFLQ---RAYDQVVND-VDQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFM--SC 524 (721)
Q Consensus 456 v~~AaGlA~~G~~p~--~~t-ys~Fl~---ra~dqi~~~-~a~~--~lpVv~v~~~~G~~G~dG~TH~~~~dia~~--~~ 524 (721)
+|++.|+|+.|.+|+ ++. |.+|+. .++||+++. .++. ..++|+...++ ..|..+..|++..+ +|+ .+
T Consensus 660 ~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~lql~~ 737 (929)
T TIGR00239 660 LGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-YEGQGPEHSSGRLE-RFLQLAA 737 (929)
T ss_pred HHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCCchhhccCHH-HHHHHhC
Confidence 999999999998885 766 999984 779999888 3443 45677777765 33554556665776 677 78
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HHHHhCCCCEEEEecCCCcccc-------cCCCCCCcceecCceE-----EEEeCCcEE
Q 004968 525 LPNMIVMAPSDEDELVDMVA-TVASIDDRPVCFRYPRGAIVRT-------DLPGYRGIPIEIGKGK-----VLVEGKDVA 591 (721)
Q Consensus 525 iPnl~V~~Psd~~E~~~~l~-~a~~~~~~P~~ir~~r~~~~~~-------~~p~~~~~~~~~gk~~-----vl~eG~dv~ 591 (721)
.|||+|+.|++|.|++++|+ .|+...++|++|..|+..+... ++|+. .+..++++.. +.+++-+.+
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~~~~~~~~~~~~~v~~v 816 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGEIEESGLSLDPEGVKRL 816 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC-CcccccccccccccccCccCCcEE
Confidence 99999999999999999999 5765348999999998765321 34432 2344454321 122333444
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC----eEEEEcCCCC-CChHHHHHHHHHhcCC
Q 004968 592 LLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT----FLITVEEGSI-GGFGSHVSHFIALDGL 666 (721)
Q Consensus 592 Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~----~vvvvEe~~~-gG~gs~v~~~l~~~~~ 666 (721)
|+++| ++..++.+ +.++++|++++|||+++|+|||.++|.++++++. .|++=||... |.|. .|...|...
T Consensus 817 v~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~-~v~~rl~~~-- 891 (929)
T TIGR00239 817 VLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWY-YSQPHLREV-- 891 (929)
T ss_pred EEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHH-HHHHHHHHH--
Confidence 55555 88888887 6777789999999999999999999999888774 4455556554 6554 665555532
Q ss_pred CCCCCceEEEecCCcccc
Q 004968 667 LDSGVKWRPIVLPDNYIE 684 (721)
Q Consensus 667 ~~~~~~~~~~g~~d~f~~ 684 (721)
+....+++-+|-|..-.+
T Consensus 892 l~~~~~l~y~gR~~~asp 909 (929)
T TIGR00239 892 IPEGVSVRYAGRPASASP 909 (929)
T ss_pred hccCCceEEeCCCCCCCC
Confidence 110124666676554333
No 35
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-39 Score=312.49 Aligned_cols=222 Identities=22% Similarity=0.362 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc---cC--C----CCcEEEecCCchH---HHHHHHh
Q 004968 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FH--A----PVDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v---f~--~----p~D~iv~d~GH~~---y~h~~lt 160 (721)
++..+|.+.|.++|+.+++++. ...||+|+|||++|++.+||+. ++ . .+|+||+|+||.+ |+.....
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 6788999999999999999987 4568999999999999999975 33 1 2799999999998 8888899
Q ss_pred Cc--hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH
Q 004968 161 GR--RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 161 Gr--~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
|. .++++++++.++ ++|||.+...|.....+|++|++||+|+|||+|.|+++.+.+|+++.|||+++||++|||+.+
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 97 778999999997 999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc
Q 004968 238 AGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (721)
Q Consensus 238 A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (721)
|++++ .|||.||+.|+.+ .+...-.+ . +.
T Consensus 165 Aah~~L~NLiaivD~N~~Q--------ldG~t~~i-----------------------~-----~~-------------- 194 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ--------LDGETEEI-----------------------M-----PK-------------- 194 (243)
T ss_pred HHHhccCcEEEEEecCCcc--------cCCchhhc-----------------------c-----Cc--------------
Confidence 99999 8999999999975 11111100 0 00
Q ss_pred cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 317 ~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
.+....||+|||+++ .|||||++++.+++++++.. .++|++|+++|+||
T Consensus 195 --~pL~~k~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 195 --EPLADKWEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred --chhHHHHHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 112457999999998 89999999999999999875 34999999999986
No 36
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.1e-38 Score=306.87 Aligned_cols=304 Identities=23% Similarity=0.316 Sum_probs=253.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCCc--c-ChHHHHHhCC-CcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD--L-SLQLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~--~-~l~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
++.+..+++.++|.-.++.||+-+++++|++-| + -..+++++|. +|+||++++||+++|+..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 457788999999999999999999999998733 1 1357888885 7999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++++..|||||+|.+++. ++--.-+-...|.+|..|-.|++..+ ++|.+.||++|+.|.+|.|+++++..
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCch-hheecCCCceEEecCCcchhhceeee
Confidence 9999999999999999863 22222222456778998999999999 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHh-CCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSK-LGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~~ 622 (721)
+++ +.+|++++.|+-.+.. .++|.. +|.++++.++++|+|+|+|||+||+.++.++|+|..-++ .|++++|||++
T Consensus 198 cir-dpnp~iffepk~lyr~a~edvp~~-dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlk 275 (362)
T KOG0525|consen 198 CIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLK 275 (362)
T ss_pred ecc-CCCceEEechHHHHHHhhhhCCCC-CccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeee
Confidence 985 8999999999865432 356653 788999999999999999999999999999999887654 59999999999
Q ss_pred ccccccHHHHHHHhccCCeE-EEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHH-HcCCCHH
Q 004968 623 FCKPLDIKLVRELCQNHTFL-ITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA-LAGLTGH 700 (721)
Q Consensus 623 ~l~PlD~e~i~~l~~~~~~v-vvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~-~~gl~~~ 700 (721)
+|-|||++.+.+++++++++ |+.|...+||||++|++.+.+++|+....++.++..-|.+.++ +.| .|-.+..
T Consensus 276 ti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~ptk~ 350 (362)
T KOG0525|consen 276 TIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMPTKN 350 (362)
T ss_pred cccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccCcHh
Confidence 99999999999988776655 5566666999999999999999997666666666555665554 122 3445889
Q ss_pred HHHHHHHHHh
Q 004968 701 HIAATALSLL 710 (721)
Q Consensus 701 ~I~~~i~~~l 710 (721)
.|.++|++.+
T Consensus 351 ki~daik~~v 360 (362)
T KOG0525|consen 351 KILDAIKKTV 360 (362)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 37
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=1.4e-37 Score=333.23 Aligned_cols=232 Identities=22% Similarity=0.314 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc-cC----CC----CcEEEecCCchH---HHHHHHhCc---h
Q 004968 100 KQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHV-FH----AP----VDKILWDVGEQT---YAHKILTGR---R 163 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v-f~----~p----~D~iv~d~GH~~---y~h~~ltGr---~ 163 (721)
+.+|+++|..+++++. ..+||+|+++|+++++.+||.. ++ .| +|+||+|+||.+ |+...+.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 5689999999999997 4789999999999999999963 32 23 799999999999 888899997 4
Q ss_pred hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 004968 164 SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (721)
Q Consensus 164 ~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~ 232 (721)
+++.++|++++ ++|||.....+...+++|++|+|++.|+|||+|.|+++ .+++|+|++|||+++||.+|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 56888999886 88999977788888999999999999999999998753 36789999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 233 Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
||+.+|++++ .|||+|+++|+++ ++.++... + ...
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q--------~dg~~~~~---~--------------------------~~~------- 197 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQ--------IDGPTDIV---F--------------------------SED------- 197 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEE--------TTEEGGGT---H--------------------------HSH-------
T ss_pred HHHHHHHHhCCCCEEEEEecCCcc--------cCCCcccc---c--------------------------chH-------
Confidence 9999999999 7899999999974 22222100 0 000
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
....|++|||+++.+.||||+++|.++|++++.. .++|++|+++|+||+|++.+|+ ..+|||.+
T Consensus 198 ---------~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~---~~~~Hg~~ 261 (332)
T PF00456_consen 198 ---------IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEG---TAKWHGSP 261 (332)
T ss_dssp ---------HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTT---SGGGTSS-
T ss_pred ---------HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcc---cchhhccC
Confidence 1246899999999556999999999999999874 4899999999999999999885 88999964
No 38
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=2.5e-36 Score=323.96 Aligned_cols=230 Identities=15% Similarity=0.163 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhHhcC-------CCCCCCcccHHHHHHHHhc-ccCC-----CCcEEEecCCchH---HHHHHHhCc-
Q 004968 100 KQLAVEIRSELSSIVSKT-------EKSLKSSLAAVELTVALHH-VFHA-----PVDKILWDVGEQT---YAHKILTGR- 162 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~~~-------~Gh~~sslg~vel~~aL~~-vf~~-----p~D~iv~d~GH~~---y~h~~ltGr- 162 (721)
.++.+.+|..+++++.+. +||+++++|+++++++||+ +++. ++|+ |+++||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 456788999999999743 3999999999999999984 5652 3899 66799999 999999998
Q ss_pred -hhhhHHHHhhCC---CCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG---ISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg---l~G~~~~~es~~-d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G~ 230 (721)
.+++.++|++++ +++||++.+++. ..+++|++|+|++.|+|||+|.|+ .+.+++|||++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 478999999998 899998876554 678899999999999999999997 56789999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+|||+++|++++ .|||+|+++|+++ ++.++..+.. ....
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~q--------idG~t~~v~~---------------------------~~e~----- 203 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQR--------LDGPVRGNGK---------------------------IIQE----- 203 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCc--------cCCccccccc---------------------------Cchh-----
Confidence 999999999999 7999999999984 2323221100 0001
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccC----------------------------------------------------
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVD---------------------------------------------------- 337 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vd---------------------------------------------------- 337 (721)
....|++|||+++ .||
T Consensus 204 -----------l~~kf~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 204 -----------LEGIFRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred -----------HHHHHHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 1346788888887 465
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcc-cccccccccccc
Q 004968 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAED-TQKSEAIEKQQE 386 (721)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~-ae~~~~~~~~Hg 386 (721)
|||+++|.+||++++.. .++|++|+++|+||+|.++ +|+ ..+||+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~---~~~~h~ 334 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEG---RNHAHQ 334 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccC---Ccchhc
Confidence 99999999999999864 4789999999999999984 664 788996
No 39
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=5.1e-36 Score=313.22 Aligned_cols=228 Identities=21% Similarity=0.301 Sum_probs=194.1
Q ss_pred HHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhccc-C--------CCCcEEEecCCchH---HHHHHHhCc--hhhhHH
Q 004968 104 VEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGR--RSLIHT 168 (721)
Q Consensus 104 ~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~vf-~--------~p~D~iv~d~GH~~---y~h~~ltGr--~~~~~~ 168 (721)
+++|..+++++. ..+||+++++|++|++.+||+.+ + .++|+||+++||++ |+++.++|+ .+++.+
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 368999999997 47899999999999999999753 2 23799999999999 778899998 478999
Q ss_pred HHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCC-CEE
Q 004968 169 LRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMI 246 (721)
Q Consensus 169 ~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~-pli 246 (721)
+|+.++ +.|||.+..+++..+++|++|+++|+|+|+|+|.++.+++++|||++|||++++|++||++++|+.+++ |++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 999985 999999888888889999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceee
Q 004968 247 VILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFE 326 (721)
Q Consensus 247 vIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~e 326 (721)
+|+|||+++ + +.+.... . ...+...+++
T Consensus 161 ~vvdnN~~~-~-------~~~~~~~--------------------------~------------------~~~~~~~~~~ 188 (255)
T cd02012 161 AIVDSNRIQ-I-------DGPTDDI--------------------------L------------------FTEDLAKKFE 188 (255)
T ss_pred EEEECCCcc-c-------cCcHhhc--------------------------c------------------CchhHHHHHH
Confidence 999999983 1 1111000 0 0011245789
Q ss_pred eeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 327 ELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 327 a~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
+|||+++ .+||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+||+..
T Consensus 189 a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~---~~~~H~~~ 245 (255)
T cd02012 189 AFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN---TAKWHGKP 245 (255)
T ss_pred HcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC---CccccCCC
Confidence 9999998 78999999999999999873 3789999999999999999885 78999864
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2.4e-35 Score=285.64 Aligned_cols=154 Identities=48% Similarity=0.738 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHH
Q 004968 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485 (721)
Q Consensus 406 ~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi 485 (721)
+++++|.+++++||+++++++|++.++++.+|+++||+||||+||+|++++++|+|+|+.|++||+++|..|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999998999999999
Q ss_pred HHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecC
Q 004968 486 VNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (721)
Q Consensus 486 ~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r 560 (721)
+++++++++||+++++++|+ .|.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|+|||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999988 5699999999999999999999999999999999999999997 57899999986
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=1.1e-32 Score=268.88 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCc----cChHHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEE-ecHhhH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMD----LSLQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFL 478 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~----~~l~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-tys~Fl 478 (721)
++++++|.+++++||+++++++|+..+ ..+++|+++||+ ||||+||+||+++++|+|||++|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 378999999999999999999998642 246899999999 99999999999999999999999999998 699999
Q ss_pred HHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC
Q 004968 479 QRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (721)
Q Consensus 479 ~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~ 550 (721)
+|++|||++++|++ ++||+++..++| .+.+|+||+ .+|+++|+++|||+|++|+|+.|++.+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999986 599999997666 567899976 567899999999999999999999999999986 6
Q ss_pred CCCEEEEecC
Q 004968 551 DRPVCFRYPR 560 (721)
Q Consensus 551 ~~P~~ir~~r 560 (721)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7999999875
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.98 E-value=1.7e-32 Score=271.53 Aligned_cols=164 Identities=37% Similarity=0.509 Sum_probs=146.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhC---CCcEeeccccHHHHHHHHHHHHhCC--CeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF---PERYFDVGMAEQHAVTFSAGLACGG--LKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~f---p~R~~d~GIaE~~~v~~AaGlA~~G--~~p~~~ty 474 (721)
+.+|+++|+++|.+++++||+|+++++|+++++....+.+.+ |+||||+||+|++++++|+|+|++| ++||+.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 468999999999999999999999999999888776555555 4599999999999999999999999 77788889
Q ss_pred HhhHH----HHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 475 SAFLQ----RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 475 s~Fl~----ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
++|++ |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++||++|++|+|+.|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99999 999999999999999999 7888888 78999999999999999999999999999999999999999975
Q ss_pred -CCCCEEEEecCCCcc
Q 004968 550 -DDRPVCFRYPRGAIV 564 (721)
Q Consensus 550 -~~~P~~ir~~r~~~~ 564 (721)
.++|+|||++|+.++
T Consensus 161 ~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 161 ESDGPVYIREPRGLYP 176 (178)
T ss_dssp SSSSEEEEEEESSEES
T ss_pred CCCCeEEEEeeHHhCC
Confidence 589999999998753
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=7.6e-29 Score=243.15 Aligned_cols=159 Identities=36% Similarity=0.503 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHHHHHcCC-CeEEEecCCCCccChHHHHHhCCCc-------EeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 402 TYDDCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQEKFPER-------YFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~~fp~R-------~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
++++++.++|.+++++|+ +++++++|+..++++.. .+.||+| |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 468899999999999955 99999999988777653 5667765 99999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
|+.|+.|++||+++++++++.|+++..+.++..|.+|+|||+.+|+++++.+||++|+.|+|++|++.++++++...++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999999987775666555443333788999999999999999999999999999999999999999755789
Q ss_pred EEEEecCC
Q 004968 554 VCFRYPRG 561 (721)
Q Consensus 554 ~~ir~~r~ 561 (721)
++||++++
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
No 44
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.93 E-value=1.9e-25 Score=238.07 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=165.0
Q ss_pred CCCHHHHHHHHH---HHHHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAV---EIRSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~---eiR~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
+++.++|..+-+ .+|.+ .++..++.+|..++++|+-.+.+++...++..+|+++. +||+++|.+.+|...
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 456666665533 33433 44444578899999999944444444444434599999 999999999999855
Q ss_pred hhHHHHhhCCCCCCCCCC-CCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCC-eEEEEEcCCCcccchHHHHH
Q 004968 165 LIHTLRKKDGISGYTSRS-ESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRE-CIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 165 ~~~~~r~~ggl~G~~~~~-es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~-~VvaviGDGal~~G~~~Eal 235 (721)
.-....-+|...|+++++ .|.| .+++ .|.+|++++.|+|+|+|.|+++++. +++|++|||+.++|.+||+|
T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358)
T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358)
T ss_pred HHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH
Confidence 322233345566766643 3554 2444 6999999999999999999999555 99999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 236 SNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
|+|+.|++|+||+|+||+|. |+|...+.. . ..
T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~-----------------~---------------------~~--------- 213 (358)
T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTA-----------------A---------------------EI--------- 213 (358)
T ss_pred HHHHHhcCCEEEEEecCCceeecchhhccc-----------------c---------------------hh---------
Confidence 99999999999999999993 222110000 0 00
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
......++|+..+ .|||+|+.++.++.++|.+. ...+|+|||+.|.+-.|++.++
T Consensus 214 ------~~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sD 270 (358)
T COG1071 214 ------IAARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSD 270 (358)
T ss_pred ------HHhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCC
Confidence 0123457899988 67999999988887766432 2578999999999988887765
No 45
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.92 E-value=8.1e-24 Score=229.07 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=165.3
Q ss_pred ccccCCCCHHHHHHHHHHH---HHH---H--HHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHH
Q 004968 88 PLRLKSLTIKELKQLAVEI---RSE---L--SSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~ei---R~~---~--~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (721)
+.++++++.++|.++.+.+ |.+ + +..-++..|+++++.|+-.+.+++-..+ .|+|+++. .||+++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHHH
Confidence 3667788888877775443 322 1 1222345689999999944444443344 47899999 9999999999
Q ss_pred hCchhhhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcC
Q 004968 160 TGRRSLIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISN 223 (721)
Q Consensus 160 tGr~~~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGD 223 (721)
.|....- .+.+ +|...|+.++ ..|.| ..++ .|++|+++|+|+|+|+|.++++ ++++|||++||
T Consensus 88 ~G~~~~~-~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GD 166 (341)
T CHL00149 88 KGVPPKN-VMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGD 166 (341)
T ss_pred cCCCHHH-HHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 9975432 2333 4545565543 23433 2344 5999999999999999999887 58999999999
Q ss_pred CCcccchHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcch
Q 004968 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302 (721)
Q Consensus 224 Gal~~G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 302 (721)
|++++|++||+||+|+.|++|+|+||.||++. |.++..+.
T Consensus 167 Ga~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~--------------------------------------- 207 (341)
T CHL00149 167 GTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST--------------------------------------- 207 (341)
T ss_pred chhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee---------------------------------------
Confidence 99999999999999999999999999999972 22110000
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH----HHHHHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS----VLQEVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~----al~~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
..++...+++++|+..+ .|||+|..++.+ +++++++ .++|++|++.|.+..|+..++
T Consensus 208 --------------~~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~D 268 (341)
T CHL00149 208 --------------SIPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLAD 268 (341)
T ss_pred --------------CCccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCCC
Confidence 00112346788999998 789999886664 4555555 578999999999999987653
No 46
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.91 E-value=8.1e-24 Score=229.76 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~ei---R~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
.++.++|.++.+.+ |.+ .++..++..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|...
T Consensus 26 ~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~ 102 (362)
T PLN02269 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTV 102 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCH
Confidence 55666666654333 322 22222345689999999943433333333 58999999 999999999999844
Q ss_pred hhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 165 LIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 165 ~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
.- .+.+ +|...|+.++ ..|.| .+++ +|++|+++|.|+|+|+|.+++++++.+||++|||++++|.+||+|
T Consensus 103 ~~-~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Eal 181 (362)
T PLN02269 103 LE-VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEAL 181 (362)
T ss_pred HH-HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHH
Confidence 32 2344 4446665553 23444 2333 699999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
|+|+.|++|+|+||+||++. ++| +.. +.... ..+.
T Consensus 182 n~A~~~~lPvvfvveNN~~a-ist-------~~~-------~~~~~----------------------------~~~~-- 216 (362)
T PLN02269 182 NIAALWDLPVIFVCENNHYG-MGT-------AEW-------RAAKS----------------------------PAYY-- 216 (362)
T ss_pred HHhhccCcCEEEEEeCCCEe-ccC-------chh-------hhccc----------------------------hHHH--
Confidence 99999999999999999983 222 111 00000 0000
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEeccCCCcccc
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~lI~v~T~kg~G~~~ae 376 (721)
. ++.++..+ .|||+|+.++.++++++.+. ..++|++|++.|.+-.|+...+
T Consensus 217 -------~--~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 217 -------K--RGDYVPGL-KVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred -------H--hhcCCCeE-EECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCC
Confidence 0 11234444 68999999999999876542 1278999999999998886543
No 47
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.91 E-value=6.7e-23 Score=218.56 Aligned_cols=213 Identities=18% Similarity=0.145 Sum_probs=160.1
Q ss_pred HHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhh-CCCCCCCCCC-
Q 004968 105 EIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSRS- 182 (721)
Q Consensus 105 eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~G~~~~~- 182 (721)
|.|..-+...++..|+.+++.|+-.+.+++...++ |+|+++. .||+++|.+.+|.... ..+.++ |...|+.++.
T Consensus 12 e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~-~~~~e~~g~~~g~~~G~~ 87 (293)
T cd02000 12 DERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLK-EMLAELFGKETGPCKGRG 87 (293)
T ss_pred HHHHHHHHHCCccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCC
Confidence 34444444555677889999999766677766666 7899988 9999999999998443 224444 4455554432
Q ss_pred CCCC-------CCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 004968 183 ESEY-------DPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (721)
Q Consensus 183 es~~-------d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~ 255 (721)
.|.| ...++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|+.+++|+++||+||++.
T Consensus 88 g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~ 167 (293)
T cd02000 88 GSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA 167 (293)
T ss_pred CCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee
Confidence 2322 234579999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEec
Q 004968 256 LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGP 335 (721)
Q Consensus 256 s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~ 335 (721)
+.+ +.. +.. -.++...+++++|+.++ .
T Consensus 168 -i~~-------~~~-------~~~-------------------------------------~~~~~~~~a~a~G~~~~-~ 194 (293)
T cd02000 168 -IST-------PTS-------RQT-------------------------------------AGTSIADRAAAYGIPGI-R 194 (293)
T ss_pred -ccC-------CHH-------HHh-------------------------------------CCccHHHHHHhCCCCEE-E
Confidence 211 100 000 00122456788999997 7
Q ss_pred cCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcc
Q 004968 336 VDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 336 vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ 374 (721)
|||+|++++.++++++.+. ..++|++|++.|.+..|+..
T Consensus 195 Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 195 VDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred ECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 8999999988888776531 14789999999999999874
No 48
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.90 E-value=1.2e-22 Score=224.67 Aligned_cols=224 Identities=13% Similarity=0.144 Sum_probs=159.5
Q ss_pred CCCHHHHHHHHHHH---HHH---HH--HhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAVEI---RSE---LS--SIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~ei---R~~---~~--~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
+++.++|.++-+.+ |.+ +. +..++..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|...
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~ 158 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPA 158 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCH
Confidence 66677776664433 322 11 222345688999999844444444444 47899988 999999999888743
Q ss_pred hhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCccc
Q 004968 165 LIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTMA 228 (721)
Q Consensus 165 ~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~~ 228 (721)
+ ..+.+ +|...|+..+ ..|.| ..++ .|++|+++|+|+|+|+|.++++ ++++|||++|||++++
T Consensus 159 ~-~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~e 237 (433)
T PLN02374 159 R-AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNN 237 (433)
T ss_pred H-HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcccc
Confidence 3 23344 3445554443 23433 2333 5899999999999999999886 4899999999999999
Q ss_pred chHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHH
Q 004968 229 GQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (721)
Q Consensus 229 G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (721)
|++||+||+|+.|++|+|+||+||+|. |.++..+..
T Consensus 238 G~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~------------------------------------------- 274 (433)
T PLN02374 238 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------------------------- 274 (433)
T ss_pred ChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccC-------------------------------------------
Confidence 999999999999999999999999973 222110000
Q ss_pred HHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH----HHHHHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS----VLQEVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~----al~~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
.++...+++++|+..+ .|||+|+.++.+ +++.+++ .++|+||++.|.+.+|+...+
T Consensus 275 ----------~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 275 ----------DPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLAD 334 (433)
T ss_pred ----------CCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCCC
Confidence 0111335678999998 789999987775 4555565 578999999999999987654
No 49
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.90 E-value=1.1e-22 Score=218.64 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=152.4
Q ss_pred hHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHh-hCCCCCCCCC-CCCCC----
Q 004968 113 IVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRK-KDGISGYTSR-SESEY---- 186 (721)
Q Consensus 113 ~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~-~ggl~G~~~~-~es~~---- 186 (721)
..++..|+++++.|+-.+.+++-..+ .|+|+++. .||.++|.+..|.... ..+.+ +|...|++.+ ..|.|
T Consensus 26 ~~g~~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~-~~~~~~~g~~~g~~~Gr~g~~h~~~~ 101 (315)
T TIGR03182 26 GMGKIGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPK-EVMAELTGRATGCSKGKGGSMHMFDR 101 (315)
T ss_pred hCCccccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCch
Confidence 33456689999999944433333333 57899999 9999999999997443 23344 3445565443 23333
Q ss_pred --CCc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCC
Q 004968 187 --DPF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES 263 (721)
Q Consensus 187 --d~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~ 263 (721)
..+ +.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+.+++|+++||.||++. +.+
T Consensus 102 ~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~---- 176 (315)
T TIGR03182 102 EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGT---- 176 (315)
T ss_pred hhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccC----
Confidence 233 359999999999999999999999999999999999999999999999999999999999999862 211
Q ss_pred CCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHH
Q 004968 264 PKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIED 343 (721)
Q Consensus 264 ~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~ 343 (721)
+.. +... .++...+++++|+.++ .|||+|+.+
T Consensus 177 ---~~~-------~~~~-------------------------------------~~~~a~~A~a~G~~~~-~Vdg~d~~a 208 (315)
T TIGR03182 177 ---SVE-------RSSS-------------------------------------VTDLYKRGESFGIPGE-RVDGMDVLA 208 (315)
T ss_pred ---CHH-------HHhC-------------------------------------CcCHHHHHHhCCCCEE-EECCCCHHH
Confidence 110 0000 0122456788999998 789999998
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 344 LISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 344 l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
+.++++++.+. ..++|++|++.|.+-.|+...
T Consensus 209 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 209 VREAAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 88777765431 257899999999999888654
No 50
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89 E-value=6.3e-22 Score=214.82 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=156.4
Q ss_pred cCCCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc
Q 004968 91 LKSLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr 162 (721)
..+++.++|.++-+.+ |.+ .+...++. |.++++.|+-.+.+++-..+ .|+|+++. .||+++|.+..|.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~ 93 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGV 93 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCC
Confidence 3456666666554332 322 22222244 67789999944444443444 47899998 9999999999998
Q ss_pred hhhhHHHHhh-CCCCCCCCCCCCCCCCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 163 RSLIHTLRKK-DGISGYTSRSESEYDPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 163 ~~~~~~~r~~-ggl~G~~~~~es~~d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
...- .+.++ |...|... .....++| +|++|+++|+|+|+|+|.++.+++++|||++|||+++.|.++|+||+|+.
T Consensus 94 ~~~~-~~ae~~g~~~g~~~--~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~ 170 (341)
T TIGR03181 94 PLVE-ILLYWRGDERGSWD--PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170 (341)
T ss_pred CHHH-HHHHhcCcCcCCCC--chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc
Confidence 4332 22333 33333211 12234455 58899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
+++|+++||.||++. +.+ +.. +. ...++
T Consensus 171 ~~LPvi~Vv~NN~~~-~~~-------~~~-------~~-------------------------------------~~~~d 198 (341)
T TIGR03181 171 FKAPVVFFVQNNQWA-ISV-------PRS-------KQ-------------------------------------TAAPT 198 (341)
T ss_pred cCCCEEEEEECCCCc-ccc-------chh-------hh-------------------------------------hCCcC
Confidence 999999999999973 111 000 00 00112
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHH----HHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQ----EVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~----~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
...++++||+.++ .|||+|..++.++++ ++++ .++|++|++.|.+-.|+...+
T Consensus 199 ~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 199 LAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred HHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeecCCCCCCCC
Confidence 2456788999998 789999876655554 4554 578999999999988876654
No 51
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.89 E-value=5e-21 Score=208.39 Aligned_cols=273 Identities=17% Similarity=0.099 Sum_probs=197.8
Q ss_pred HcCCCeEEEecCCCCccC---hHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcC
Q 004968 416 EKDKDIVVVHAGMEMDLS---LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~---l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~ 492 (721)
+.+.+++..-+-.+.+.- +..+.+++...|+. .-+|.+++++|.|+|++|.|.+++|++.++..+++++ ..++..
T Consensus 19 ~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~ 96 (352)
T PRK07119 19 RAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGA 96 (352)
T ss_pred HhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHc
Confidence 346677665554443332 33444556677888 8999999999999999999999999999999999987 688999
Q ss_pred CcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc-----CCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc-
Q 004968 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSC-----LPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI- 563 (721)
Q Consensus 493 ~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~-----iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~- 563 (721)
++|++++...++..+ .|.|+..+.|+.+.+. .-++.|++|+|++|++++...|++.++ -|++++.+....
T Consensus 97 e~P~v~v~v~R~~p~-~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh 175 (352)
T PRK07119 97 ELPCVIVNIMRGGPG-LGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQ 175 (352)
T ss_pred cCCEEEEEeccCCCC-CCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhC
Confidence 999888874444323 3468888889766532 224899999999999999999998654 599998754211
Q ss_pred --ccccCCCC-----CCcce-ecCc----------------------------e----------EEE-EeCCcEEEEEec
Q 004968 564 --VRTDLPGY-----RGIPI-EIGK----------------------------G----------KVL-VEGKDVALLGYG 596 (721)
Q Consensus 564 --~~~~~p~~-----~~~~~-~~gk----------------------------~----------~vl-~eG~dv~Iva~G 596 (721)
...++|+. ...+. ..+. . +.. .+++|++||+||
T Consensus 176 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~G 255 (352)
T PRK07119 176 MMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYG 255 (352)
T ss_pred ceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcC
Confidence 00111100 00000 0000 0 111 136899999999
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 676 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~ 676 (721)
+++..+++|++.|+++|++++|++++++||||.+.|++++++++.|+|+|++ .|.+..+|...+.. ..++..+
T Consensus 256 s~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~------~~~~~~i 328 (352)
T PRK07119 256 TSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNG------KKPVEFY 328 (352)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCC------CCceeEE
Confidence 9999999999999999999999999999999999999999999999999998 47788887754421 1122233
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 677 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 677 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+..+ | .-++++.|.+.++++++
T Consensus 329 ~k~~-----G--------~~~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 329 GRMG-----G--------MVPTPEEILEKIKEILG 350 (352)
T ss_pred eccC-----C--------EeCCHHHHHHHHHHHhc
Confidence 3211 1 12688999999998874
No 52
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.88 E-value=8.1e-24 Score=197.17 Aligned_cols=123 Identities=34% Similarity=0.569 Sum_probs=115.0
Q ss_pred CceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHH
Q 004968 579 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHV 657 (721)
Q Consensus 579 gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v 657 (721)
||+.++++|+|++||+||++++.|++|++.|+++||+++|||++|++|||++.|.++++++++++|+||+. .||||+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999888989999999997 79999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
++++.++++.....++.++|.||.|+++| ..++++++|||+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999988743347899999999999999 999999999999987
No 53
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.88 E-value=1.3e-21 Score=208.77 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=145.4
Q ss_pred hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhh-CCCCCCCCCCC------CCCC
Q 004968 115 SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSRSE------SEYD 187 (721)
Q Consensus 115 ~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~G~~~~~e------s~~d 187 (721)
++..|..+++.|+-.+.+++...++ |.|+++. .|++.++.+..|.... ..+.++ |...|...... ....
T Consensus 20 ~~~~g~~~~~~GqEa~~v~~~~~l~-~~D~v~~--~yR~~~~~la~g~~~~-~~~~e~~g~~~g~~g~~~~~~~~~~~~~ 95 (300)
T PF00676_consen 20 QGRFGFYHLSAGQEAIQVAAAAALR-PGDWVFP--YYRDHGHALARGIDLE-EIFAELLGKAKGHGGGRHPLHFSDKGLN 95 (300)
T ss_dssp TTSSSCTT-TTTCHHHHHHHHHHSC-TTSEEEE--CSTTHHHHHHTTT-HH-HHHHHHHTBTTSTTTTGCTTEEEBTTTT
T ss_pred CCCeEEecchHHHHHHHHHHHHhcc-CCCEEEe--cccchhhhhhcccccc-chhHHhcCcccCCCCCccccccccccce
Confidence 3556888999999666666655555 7899998 7999999998887422 222332 22222111111 1112
Q ss_pred Cc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCc
Q 004968 188 PF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKT 266 (721)
Q Consensus 188 ~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~ 266 (721)
.+ +++++|.++|+|+|+|+|.|+++++..++|++|||+.++|.+||+||+|+.|++|+||||+||++. ++|
T Consensus 96 ~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~a-ist------- 167 (300)
T PF00676_consen 96 ILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYA-IST------- 167 (300)
T ss_dssp BEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEE-TTE-------
T ss_pred eeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcc-ccc-------
Confidence 33 479999999999999999999999999999999999999999999999999999999999999982 222
Q ss_pred chhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH
Q 004968 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (721)
Q Consensus 267 ~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~ 346 (721)
+.. +.. .......+++++|+..+ .|||+|+.++.+
T Consensus 168 ~~~-------~~~-------------------------------------~~~~~~~~a~~~gip~~-~VDG~D~~av~~ 202 (300)
T PF00676_consen 168 PTE-------EQT-------------------------------------ASPDIADRAKGYGIPGI-RVDGNDVEAVYE 202 (300)
T ss_dssp EHH-------HHC-------------------------------------SSSTSGGGGGGTTSEEE-EEETTSHHHHHH
T ss_pred Ccc-------ccc-------------------------------------cccchhhhhhccCCcEE-EECCEeHHHHHH
Confidence 111 000 01112456788999998 899999999888
Q ss_pred HHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 347 VLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 347 al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
++++|.+. ..++|+||++.|.+-.|+..++
T Consensus 203 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 203 AAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 77765432 2589999999999999987665
No 54
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.87 E-value=1.5e-20 Score=218.65 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCC--CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFP--ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAY 482 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp--~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~ 482 (721)
+|++.++.. .+.+++..-+-.+.+.-++.+.+..+ +-++.....|..++.+|.|+|++|.|.+++|.+..+.++.
T Consensus 9 eA~A~g~~~---ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~ 85 (595)
T TIGR03336 9 EAIARGALE---AGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAA 85 (595)
T ss_pred HHHHHHHHH---cCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhH
Confidence 455544432 34555554443333222344554433 4677888899999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEE
Q 004968 483 DQVVNDVD--QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFR 557 (721)
Q Consensus 483 dqi~~~~a--~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir 557 (721)
|++.. ++ ..++|++++...+. | .++|+..+.|..+.+. -++.|++|+|++|++++...|++.+ .-|++++
T Consensus 86 e~l~~-~~~~g~~~~iV~~~~~~~--g-p~~~~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~ 160 (595)
T TIGR03336 86 DPLMT-LAYTGVKGGLVVVVADDP--S-MHSSQNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILR 160 (595)
T ss_pred HHhhh-hhhhcCcCceEEEEccCC--C-CccchhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99865 45 34777777764331 2 3588888888766654 5888999999999999999999864 4599998
Q ss_pred ecCCCc---ccccCCCC---C---Ccceec----------------------------Cc--e-EEEEeCCcEEEEEech
Q 004968 558 YPRGAI---VRTDLPGY---R---GIPIEI----------------------------GK--G-KVLVEGKDVALLGYGA 597 (721)
Q Consensus 558 ~~r~~~---~~~~~p~~---~---~~~~~~----------------------------gk--~-~vl~eG~dv~Iva~Gs 597 (721)
++.... ...++++. . +...+. .. . .+..+++|++||+||+
T Consensus 161 ~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~ 240 (595)
T TIGR03336 161 PTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGI 240 (595)
T ss_pred EeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCH
Confidence 753211 00111100 0 000000 00 0 1122468999999999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV 677 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g 677 (721)
+++.+++|++.| |++++|++++++||||++.|++++++++.||||||+. +++++.+..++...+ .+++++|
T Consensus 241 ~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G 311 (595)
T TIGR03336 241 AYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHG 311 (595)
T ss_pred HHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEec
Confidence 999999988765 9999999999999999999999999999999999998 566666665555433 3688999
Q ss_pred cCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 678 LPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 678 ~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
+||.|++ +..+||++.|.++++++
T Consensus 312 ~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 312 KEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred ccCCccC--------cccCcCHHHHHHHHHHh
Confidence 9999998 45789999999999886
No 55
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.85 E-value=2.1e-19 Score=197.12 Aligned_cols=269 Identities=15% Similarity=0.168 Sum_probs=188.0
Q ss_pred CCCeEEEecCCCCccChHHHHH---hCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc
Q 004968 418 DKDIVVVHAGMEMDLSLQLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494 (721)
Q Consensus 418 d~~iv~i~ad~~~~~~l~~f~~---~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l 494 (721)
..+++..-+=.+.+.-+..+.+ +....|+.+- +|.+++++|.|+|++|.|.+++|++..+..+.+++ ..++..++
T Consensus 21 g~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~ 98 (376)
T PRK08659 21 GCRFFAGYPITPSTEIAEVMARELPKVGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTET 98 (376)
T ss_pred CCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCC
Confidence 5566655444443322334433 3445788887 99999999999999999999999999999999987 56677899
Q ss_pred ceEEEE-cCCCCcCCCCCCcCcHHHHHHHcc----CCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc---
Q 004968 495 PVRFVI-TSAGLVGSDGPTQCGAFDITFMSC----LPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI--- 563 (721)
Q Consensus 495 pVv~v~-~~~G~~G~dG~TH~~~~dia~~~~----iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~--- 563 (721)
|+|++. +|+|. +..-||++.+.|+...+. --++.|++|+|++|++++...|++.++ -|++++.+....
T Consensus 99 P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~ 177 (376)
T PRK08659 99 PCVIVNVQRGGP-STGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMR 177 (376)
T ss_pred CEEEEEeecCCC-CCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCc
Confidence 988877 55554 233478888778655441 123679999999999999999998644 599987753210
Q ss_pred ccccCCC------------------CCCcc-----ee----cC--c----------------------------------
Q 004968 564 VRTDLPG------------------YRGIP-----IE----IG--K---------------------------------- 580 (721)
Q Consensus 564 ~~~~~p~------------------~~~~~-----~~----~g--k---------------------------------- 580 (721)
...++|+ ...+. ++ .+ .
T Consensus 178 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 257 (376)
T PRK08659 178 EKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIE 257 (376)
T ss_pred ccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHH
Confidence 0000000 00000 00 01 0
Q ss_pred --------eEEEE-eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCC
Q 004968 581 --------GKVLV-EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIG 651 (721)
Q Consensus 581 --------~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~g 651 (721)
.+... +++|++||+||++...+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||+| .|
T Consensus 258 ~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g 336 (376)
T PRK08659 258 KNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LG 336 (376)
T ss_pred HHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HH
Confidence 01111 468999999999999999999999999999999999999999999999999999999999999 47
Q ss_pred ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 652 GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 652 G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
.+..++...+.. ..++..+... .|. -++++.|.+.++++
T Consensus 337 ~l~~el~~~~~~------~~~~~~i~~~-----~G~--------~~~~~ei~~~~~~~ 375 (376)
T PRK08659 337 QMSLEVERVVNG------RAKVEGINKI-----GGE--------LITPEEILEKIKEV 375 (376)
T ss_pred HHHHHHHHHhCC------CCCeeEEecc-----CCC--------cCCHHHHHHHHHhh
Confidence 666666654431 1112222211 111 27889999888764
No 56
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.84 E-value=6.2e-19 Score=195.56 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=199.3
Q ss_pred cCCCeEEEecCCCCccChHHHHHhCC-----CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~fp-----~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
.+.++++.-+=.+.+.-++.+.+..| ..|+.+ =+|.++++++.|+|.+|.|.+++|.+..+..+.|.+ ..++.
T Consensus 26 Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~ 103 (407)
T PRK09622 26 AQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASG 103 (407)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHH
Confidence 46677766554444333345554444 346654 499999999999999999999999999999999988 57789
Q ss_pred CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC-----CCCEEEEecCCCc---
Q 004968 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-----DRPVCFRYPRGAI--- 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~-----~~P~~ir~~r~~~--- 563 (721)
.++|+|++...+|+.+ .-+++....|+...+ ..++.+++|+|+||++++...|++.+ .-|++++++....
T Consensus 104 ~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~ 181 (407)
T PRK09622 104 MRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHT 181 (407)
T ss_pred hhCCEEEEEeccccCC-CcCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCc
Confidence 9999888886666533 478999999976555 57899999999999999999999863 4699987754421
Q ss_pred -ccccCCCC----------CCc--------c--ee------------------------------------cCc----eE
Q 004968 564 -VRTDLPGY----------RGI--------P--IE------------------------------------IGK----GK 582 (721)
Q Consensus 564 -~~~~~p~~----------~~~--------~--~~------------------------------------~gk----~~ 582 (721)
...++++. +.+ + .. .++ .+
T Consensus 182 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e 261 (407)
T PRK09622 182 AQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVE 261 (407)
T ss_pred eeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCcee
Confidence 00111000 000 0 00 000 00
Q ss_pred EE-EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHH
Q 004968 583 VL-VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHF 660 (721)
Q Consensus 583 vl-~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~ 660 (721)
.. .+++|++||+||+++..+++|++.|+++|+++++|++++++|||.+.|.+++++++.|+|+|++. .||+|+.+.+.
T Consensus 262 ~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 262 TYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred ecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 00 13679999999999999999999999999999999999999999999999999999999999997 68888866655
Q ss_pred HHhcCCCCC-CCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 661 IALDGLLDS-GVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 661 l~~~~~~~~-~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+..-..... ..++ .++ ..|+..| ..+++++|.+.++++..
T Consensus 342 ~~al~~~~~~~~~~-v~~--~~~g~gG--------~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQGTKHPV-VSN--YIYGLGG--------RDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCcCCCce-Eee--eEECCCC--------CCCCHHHHHHHHHHHHh
Confidence 543221100 0111 011 1222222 13788999998887764
No 57
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.84 E-value=3e-20 Score=191.15 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=149.3
Q ss_pred hHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc--hhhhHHHHhhCCCCCCCCC-CCCCC---
Q 004968 113 IVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR--RSLIHTLRKKDGISGYTSR-SESEY--- 186 (721)
Q Consensus 113 ~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr--~~~~~~~r~~ggl~G~~~~-~es~~--- 186 (721)
...+..|+.|.+.||-.+.+.+-... ++.|-||. .++++.+.+++|- ++-|.. -+|...|..+. .+|+|
T Consensus 83 K~k~IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aE--L~Gr~~Gc~kGKGGSMHmy~ 157 (394)
T KOG0225|consen 83 KAKKIRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAE--LMGRQAGCSKGKGGSMHMYA 157 (394)
T ss_pred hhhhhceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHH--HhccccccccCCCcceeeec
Confidence 33456899999999955555443333 57899999 8888888888886 333322 24556666664 34766
Q ss_pred -CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCC
Q 004968 187 -DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESP 264 (721)
Q Consensus 187 -d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~ 264 (721)
+++| .|.+|.++|.+.|+|+|.++++++...+++.|||+.++|+.||++|+|+.|++|+||||+||.|- +-|..
T Consensus 158 k~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG-MGTs~--- 233 (394)
T KOG0225|consen 158 KNFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG-MGTSA--- 233 (394)
T ss_pred ccccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc-cCcch---
Confidence 3454 79999999999999999999999999999999999999999999999999999999999999982 22211
Q ss_pred CcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHH
Q 004968 265 KTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDL 344 (721)
Q Consensus 265 ~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l 344 (721)
.|...++.|- + ++ .. +..+ .|||.|+-.+
T Consensus 234 -----------~Rasa~teyy---------------------k------RG-------~y-----iPGl-~VdGmdvlaV 262 (394)
T KOG0225|consen 234 -----------ERASASTEYY---------------------K------RG-------DY-----IPGL-KVDGMDVLAV 262 (394)
T ss_pred -----------hhhhcChHHH---------------------h------cc-------CC-----CCce-EECCcchhhH
Confidence 1111111110 0 11 01 1223 5899999999
Q ss_pred HHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 345 ISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 345 ~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
.++.+.|++. +.++|.++++.|.+=.|++-++
T Consensus 263 r~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 263 REATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9998888764 2479999999999988877654
No 58
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.83 E-value=9.3e-19 Score=191.58 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=190.9
Q ss_pred HcCCCeEEEecCCCCccChHHHH---HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcC
Q 004968 416 EKDKDIVVVHAGMEMDLSLQLFQ---EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~---~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~ 492 (721)
+.+.++++.-+=.+.+.-++.+. +++...|+.+ =+|.+++++|.|+|++|.|.+++|++..+..+.+++ ..++..
T Consensus 18 ~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~ 95 (375)
T PRK09627 18 ECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIA 95 (375)
T ss_pred HhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhc
Confidence 34667766554444332233333 3444556665 599999999999999999999999999988888887 567889
Q ss_pred CcceEEEE-cCCCCcCCCCCCcCcHHHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc
Q 004968 493 RLPVRFVI-TSAGLVGSDGPTQCGAFDITFMS-----CLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI 563 (721)
Q Consensus 493 ~lpVv~v~-~~~G~~G~dG~TH~~~~dia~~~-----~iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~ 563 (721)
++|++++. .|+|. +..-||...+.|+...+ ..| ++|++|+|++|++++...|++.++ -|++++.+....
T Consensus 96 e~P~V~~~~~R~Gp-stG~p~~~~q~D~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ls 173 (375)
T PRK09627 96 EIPLVIVNVMRGGP-STGLPTRVAQGDVNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVG 173 (375)
T ss_pred cCCEEEEEeccCCC-cCCCCCccchHHHHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHh
Confidence 99999877 55565 22348888888877666 344 459999999999999999998644 499987753110
Q ss_pred ---ccccCCC--------------------CCCcce------e-------------------------------------
Q 004968 564 ---VRTDLPG--------------------YRGIPI------E------------------------------------- 577 (721)
Q Consensus 564 ---~~~~~p~--------------------~~~~~~------~------------------------------------- 577 (721)
...++|+ ...+.. .
T Consensus 174 h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~ 253 (375)
T PRK09627 174 HMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRL 253 (375)
T ss_pred CCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHH
Confidence 0000000 000000 0
Q ss_pred ----------cCceEEEE-eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 578 ----------IGKGKVLV-EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 578 ----------~gk~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
+...+... +++|++||+||+....+.+|++.|+++|++++++.+++++|||.+.|++.+++.+.|+|||
T Consensus 254 ~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE 333 (375)
T PRK09627 254 FNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIE 333 (375)
T ss_pred HHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEc
Confidence 00001111 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 647 EGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 647 e~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
+|. |+|..+|.+.+... ++..++. + .|. -++++.|.+.++++
T Consensus 334 ~n~-Gql~~~v~~~~~~~-------~~~~i~~---~--~G~--------~~~~~~i~~~i~~~ 375 (375)
T PRK09627 334 LNM-GQYLEEIERVMQRD-------DFHFLGK---A--NGR--------PISPSEIIAKVKEL 375 (375)
T ss_pred CCh-HHHHHHHHHHhCCC-------CceEEee---e--CCC--------cCCHHHHHHHHHhC
Confidence 998 88998888765321 1222221 1 122 27889999888763
No 59
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.80 E-value=9.9e-18 Score=184.25 Aligned_cols=238 Identities=16% Similarity=0.168 Sum_probs=175.4
Q ss_pred HcCCCeEEEecCCCCccChHHHHHhCC--C--cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 416 EKDKDIVVVHAGMEMDLSLQLFQEKFP--E--RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~~~fp--~--R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
..+.+++..-+=.+.+.-+..+.+..+ + -.+-..=+|.+++++|.|+|++|.|.+++|++..+..+.|++ ..++.
T Consensus 18 ~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~ 96 (390)
T PRK08366 18 HARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAG 96 (390)
T ss_pred HhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHh
Confidence 346777765554443333344554444 2 222233599999999999999999999999999999999988 57789
Q ss_pred CCcceEEEEc-CCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCCcc---
Q 004968 492 QRLPVRFVIT-SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGAIV--- 564 (721)
Q Consensus 492 ~~lpVv~v~~-~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~~~--- 564 (721)
.++|+|++.. |+|. + .+++|+.+.|+.+.+ -.++.+++|+|+||+.++...|++.+ .-|++++++.....
T Consensus 97 ~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~~-d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~ 173 (390)
T PRK08366 97 ARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQR-DTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTY 173 (390)
T ss_pred cCCCEEEEEeccCCC-C-CCCCcchhhHHHHHh-hcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccc
Confidence 9999998774 5454 3 579999999976555 46899999999999999999999854 45999887532110
Q ss_pred -ccc----------CCC-CC-------Cccee--------------------------------------cCceEE--EE
Q 004968 565 -RTD----------LPG-YR-------GIPIE--------------------------------------IGKGKV--LV 585 (721)
Q Consensus 565 -~~~----------~p~-~~-------~~~~~--------------------------------------~gk~~v--l~ 585 (721)
..+ ++. .. ..+.. +|+-+. ..
T Consensus 174 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e 253 (390)
T PRK08366 174 DVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIE 253 (390)
T ss_pred ccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccce
Confidence 000 000 00 00000 111111 11
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCC-CChHHHH
Q 004968 586 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHV 657 (721)
Q Consensus 586 ----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~-gG~gs~v 657 (721)
+++|++||+||+....+++|++.|+++|++++++.+++++|||.+.|++++++.+.|+|+|.+.. |++|..+
T Consensus 254 ~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~ 330 (390)
T PRK08366 254 TYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILF 330 (390)
T ss_pred ecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999974 7755333
No 60
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=4.6e-17 Score=181.89 Aligned_cols=466 Identities=14% Similarity=0.135 Sum_probs=277.3
Q ss_pred CCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchHH---HHHHHhCc-----------hhh----hHHHHhhCCCCC
Q 004968 118 EKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQTY---AHKILTGR-----------RSL----IHTLRKKDGISG 177 (721)
Q Consensus 118 ~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~y---~h~~ltGr-----------~~~----~~~~r~~ggl~G 177 (721)
-||.|.+.|+.-+.+-+-++-. ...+. .|..-||..- +..+|.|. .+. +..|+-.||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 4899999998766554433322 11233 3345577651 22334442 112 233333466766
Q ss_pred CCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHH-hhhcCCCEEEEEECCC
Q 004968 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSN-AGYLDSNMIVILNDSR 253 (721)
Q Consensus 178 ~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~-A~~~~~plivIv~dN~ 253 (721)
|..+ +.|+..--.|-+|++++.|.|+|+- .++-.++|++|||+-.+|. +|-+--+ .-....+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 6654 3444333458999999999988764 7799999999999543333 3333111 1122378999999999
Q ss_pred CC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE
Q 004968 254 HS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (721)
Q Consensus 254 ~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~ 332 (721)
+. +-||- ++.+ . + .+ . ..+|+.+||.-
T Consensus 215 ykI~npT~-------lar~-------s--------------------~--~e--------l--------~~~f~G~Gy~p 242 (793)
T COG3957 215 YKIENPTV-------LARI-------S--------------------D--EE--------L--------KALFEGYGYEP 242 (793)
T ss_pred eeccCcee-------eeec-------C--------------------h--HH--------H--------HHHHhhCCCce
Confidence 83 22221 1111 0 0 00 0 34789999997
Q ss_pred EeccCCCCHHHH--------HHHHHH-------HHhc-CCCCCE--EEEEEEeccCCCcccccc---cccccccccCC--
Q 004968 333 IGPVDGHNIEDL--------ISVLQE-------VASL-GSMGPV--LVHVVTEENRRAEDTQKS---EAIEKQQEGAS-- 389 (721)
Q Consensus 333 ~g~vdGhd~~~l--------~~al~~-------a~~~-~~~~P~--lI~v~T~kg~G~~~ae~~---~~~~~~Hg~~~-- 389 (721)
+ -++|+|+++. ..++++ +++. ...+|. +|..+|-||++-+..-.+ ++.-..|-++-
T Consensus 243 ~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~ 321 (793)
T COG3957 243 V-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKG 321 (793)
T ss_pred e-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCC
Confidence 6 5788888762 222222 2221 012232 578899999875432110 01222344420
Q ss_pred -----------------------C-CCCCCC-------------------------------C-------------CCcc
Q 004968 390 -----------------------D-SNSLPF-------------------------------G-------------NYSR 401 (721)
Q Consensus 390 -----------------------f-~~g~~~-------------------------------~-------------~~~~ 401 (721)
| +.|... + ....
T Consensus 322 ~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~ 401 (793)
T COG3957 322 HNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTA 401 (793)
T ss_pred CCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccch
Confidence 1 111100 0 0112
Q ss_pred cHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHH---h--------------CCCcEeeccccHHHHHHHHHHHH
Q 004968 402 TYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE---K--------------FPERYFDVGMAEQHAVTFSAGLA 463 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~---~--------------fp~R~~d~GIaE~~~v~~AaGlA 463 (721)
.-+.++++.+.+.++.|++ +.++++|-..|.++.+..+ + -.+|+++ .++|+.+.|.+.|++
T Consensus 402 ~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~ 480 (793)
T COG3957 402 ESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYL 480 (793)
T ss_pred hhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHH
Confidence 3367899999999999988 9999999888877743322 1 1369999 699999999999999
Q ss_pred hCCCeeEEEecHhhHH---HHHHHHH--HHhhc-----CCcceEEEEcCCCC--cCCCCCCcCcHHHHHH-HccCCC-cE
Q 004968 464 CGGLKPFCIIPSAFLQ---RAYDQVV--NDVDQ-----QRLPVRFVITSAGL--VGSDGPTQCGAFDITF-MSCLPN-MI 529 (721)
Q Consensus 464 ~~G~~p~~~tys~Fl~---ra~dqi~--~~~a~-----~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~-~~~iPn-l~ 529 (721)
+.|.+-++++|-.|+- -++.|.. ..++. ...|-...+..++. .+.+|-|||...=+.+ +...++ +.
T Consensus 481 LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vR 560 (793)
T COG3957 481 LTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVR 560 (793)
T ss_pred hcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCcee
Confidence 9999999999999973 3333321 11121 12222222223444 4789999995443334 444565 57
Q ss_pred EEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEE------eC-CcEEEEEechhh-HH
Q 004968 530 VMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLV------EG-KDVALLGYGAMV-QN 601 (721)
Q Consensus 530 V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~------eG-~dv~Iva~Gs~v-~~ 601 (721)
|+.|.|++-+..++..|+...++-.+|..+|++.+.. + +.+....-..++..+- +| .||++.+.|.+. -+
T Consensus 561 vyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~-~-t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e 638 (793)
T COG3957 561 VYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQW-L-TMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIE 638 (793)
T ss_pred EecCCCCcchhhhhhHHhhccCceEEEEecCCCccee-e-cHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHH
Confidence 8999999999999999998666667777777763321 0 0000000011111111 23 479999999876 88
Q ss_pred HHHHHHHHHhCC--CCeEEe---ecCcccc-------ccHHHHHHHhccCCeEEE
Q 004968 602 CLKARALLSKLG--IDVTVA---DARFCKP-------LDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 602 al~Aa~~L~~~G--i~v~VI---d~~~l~P-------lD~e~i~~l~~~~~~vvv 644 (721)
+++|++.|++++ ++++|| |+..+.| ++.+.+.++.-+.+.+|.
T Consensus 639 ~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 639 VLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred HHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 999999999998 777755 5555555 345566666544455543
No 61
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.79 E-value=5.1e-17 Score=179.05 Aligned_cols=276 Identities=15% Similarity=0.171 Sum_probs=196.4
Q ss_pred cCCCeEEEecCCCCccChHHHHHhCC-----CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~fp-----~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
.+.+++..-+=.+.+.-++.+.+..+ ..|+. .=+|.+++++|.|+|.+|.|.+++|.+..+..+.|++ ..++.
T Consensus 20 Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag 97 (394)
T PRK08367 20 AKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIK-VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAG 97 (394)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHH
Confidence 46777765554443333344444333 22333 3699999999999999999999999999999999987 67799
Q ss_pred CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC--C---CEEEEecCCCc---
Q 004968 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD--R---PVCFRYPRGAI--- 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~--~---P~~ir~~r~~~--- 563 (721)
.++|++++...+++ +...++|....|+...+ --++.++.|+|.||+.++...|++.++ + |++++++....
T Consensus 98 ~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~r-d~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~ 175 (394)
T PRK08367 98 MRLPIVMAIGNRAL-SAPINIWNDWQDTISQR-DTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHT 175 (394)
T ss_pred ccCCEEEEECCCCC-CCCCCcCcchHHHHhcc-ccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCc
Confidence 99999999855554 33558898888854444 456889999999999999999998766 4 99988764210
Q ss_pred -ccccCCC----------CCC--------cce----------------------------------e----cC-ceEEEE
Q 004968 564 -VRTDLPG----------YRG--------IPI----------------------------------E----IG-KGKVLV 585 (721)
Q Consensus 564 -~~~~~p~----------~~~--------~~~----------------------------------~----~g-k~~vl~ 585 (721)
...++|+ .+. .+. + .| +...+.
T Consensus 176 ~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e 255 (394)
T PRK08367 176 VEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIE 255 (394)
T ss_pred ccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeE
Confidence 0011110 000 000 0 11 111111
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC----CCChHHHH
Q 004968 586 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS----IGGFGSHV 657 (721)
Q Consensus 586 ----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~----~gG~gs~v 657 (721)
+++|++||+||+....+.+|++.|+++|++|+++.+++++|||.+.|++++++.+.|+|+|.+. .|.+..+|
T Consensus 256 ~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV 335 (394)
T PRK08367 256 EYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADA 335 (394)
T ss_pred EeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999986 36677788
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
...|...+ ...++..+ .++-.|. -+++++|.+.+.++++
T Consensus 336 ~aal~~~~---~~~~v~~~----~~glgg~--------~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 336 SAALVNES---EKPKILDF----IIGLGGR--------DVTFKQLDEALEIAEK 374 (394)
T ss_pred HHHHhccC---CCCeEEEE----EeCCCCC--------CCCHHHHHHHHHHHHH
Confidence 77764322 12222221 1111221 3789999988887664
No 62
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.77 E-value=1.3e-17 Score=192.34 Aligned_cols=252 Identities=18% Similarity=0.213 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHH---HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHH
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ---EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQR 480 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~---~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~r 480 (721)
.+|++.+.. ....+++..-+=.+.+.-++.++ +++ +-.+-..-+|.+++++|.|+|++|.|.+++|++..+..
T Consensus 199 NeAvA~ga~---~ag~~~~~~YPiTPsTei~e~la~~~~~~-~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~l 274 (562)
T TIGR03710 199 NEAIALGAI---AAGLRFYAAYPITPASDILEFLAKHLKKF-GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFAL 274 (562)
T ss_pred HHHHHHHHH---HhCCceecccCCCChhHHHHHHHHhhhhh-CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhH
Confidence 455555433 33556555443333222223333 333 45666678999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEE-cCCCCcCCCCCCcCcHHHHHHHccCC----CcEEEeeCCHHHHHHHHHHHHHhCC---C
Q 004968 481 AYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITFMSCLP----NMIVMAPSDEDELVDMVATVASIDD---R 552 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH~~~~dia~~~~iP----nl~V~~Psd~~E~~~~l~~a~~~~~---~ 552 (721)
+.|.+ ..++..++|+|++. +|+|. +..-||+..+.|+-+.+.-. ++.|++|+|++|+.++...|++.++ -
T Consensus 275 m~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~ 352 (562)
T TIGR03710 275 MTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQT 352 (562)
T ss_pred hHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99988 77788999998887 55554 33347999999976655321 3889999999999999999998644 5
Q ss_pred CEEEEecCCCc---ccccCCC------------------CCCc--------cee-cC-----------------------
Q 004968 553 PVCFRYPRGAI---VRTDLPG------------------YRGI--------PIE-IG----------------------- 579 (721)
Q Consensus 553 P~~ir~~r~~~---~~~~~p~------------------~~~~--------~~~-~g----------------------- 579 (721)
|++++.+.... ...++|+ ...+ +.. .|
T Consensus 353 PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~ 432 (562)
T TIGR03710 353 PVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDP 432 (562)
T ss_pred CEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCH
Confidence 99987643210 0000000 0000 000 00
Q ss_pred ------------c----------eEEE-EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh
Q 004968 580 ------------K----------GKVL-VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 580 ------------k----------~~vl-~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
| .+.. .++++++||+||++...+.+|++.|+++|++++++.+++++|||.+.|++.+
T Consensus 433 ~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l 512 (562)
T TIGR03710 433 ENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELL 512 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHH
Confidence 0 0111 1257899999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 637 QNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 637 ~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
++.+.|+|+|++..|++..+|...+
T Consensus 513 ~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 513 EGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred hcCCEEEEEccChhhhHHHHHHHHh
Confidence 9999999999998899999888765
No 63
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.70 E-value=1.6e-16 Score=164.64 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=134.7
Q ss_pred CCCCCcccHHHHHHHHhcccCCC----CcEEEecCCchHHHHHHH--hCchhhhHHHHhhCCCCCCCC-----CCCCCC-
Q 004968 119 KSLKSSLAAVELTVALHHVFHAP----VDKILWDVGEQTYAHKIL--TGRRSLIHTLRKKDGISGYTS-----RSESEY- 186 (721)
Q Consensus 119 Gh~~sslg~vel~~aL~~vf~~p----~D~iv~d~GH~~y~h~~l--tGr~~~~~~~r~~ggl~G~~~-----~~es~~- 186 (721)
++++ ..|+-.+..+|...++.. -+.+++...||.-.+.+. .|...+ ..++++.+...+|. ++-+-|
T Consensus 13 krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~-~if~ef~g~~~~~~~~~~~gdv~yHl 90 (265)
T cd02016 13 KRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLE-QIFSEFEGKSEFPEDDEGSGDVKYHL 90 (265)
T ss_pred eEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHH-HHHHHhhCCCCCCCCCCCCCCcCcCC
Confidence 4543 667655666666555532 134555556888655544 554221 22344433222211 110111
Q ss_pred -----------------CCcCcCCCcchHHHHHHHHHHHHHcC-----CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCC
Q 004968 187 -----------------DPFNAGHGCNSVSAGLGMAVARDIKG-----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDS 243 (721)
Q Consensus 187 -----------------d~~~~G~~G~~is~A~G~AlA~~l~g-----~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~ 243 (721)
.....+|+|..+|.|+|+|+|.++++ ++..+|+++|||++ .+|.+||+||+|+.|++
T Consensus 91 g~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~l 170 (265)
T cd02016 91 GYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGY 170 (265)
T ss_pred ccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCC
Confidence 01224789999999999999999998 47889999999996 59999999999999998
Q ss_pred C---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 244 N---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 244 p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
| +|+||+||++. +.| +.. +.++ ...
T Consensus 171 p~gg~ifvveNNq~g-~sT-------~~~-------~~~~-------------------------------------~~~ 198 (265)
T cd02016 171 TTGGTIHIVVNNQIG-FTT-------DPR-------DSRS-------------------------------------SPY 198 (265)
T ss_pred CCCCEEEEEEeCCEE-EEe-------cHH-------Hhcc-------------------------------------ccc
Confidence 8 99999999983 211 110 0000 000
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
-..+++++|+..+ .|||+|++++.++.++|.+. +.++|++|++.|.+-+|+...+
T Consensus 199 ~~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 199 CTDVAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred HHHHHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcC
Confidence 1335678899988 89999999998887766432 2578999999999999986543
No 64
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.66 E-value=5.9e-16 Score=156.73 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=106.7
Q ss_pred HHHhh---CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH---HHHHHHhhhc
Q 004968 168 TLRKK---DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA---YEAMSNAGYL 241 (721)
Q Consensus 168 ~~r~~---ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~---~Ealn~A~~~ 241 (721)
.+||| |++++|+.+ +.+.....+|.+|++++.|+|+|+ ++++.+|+|++|||++++|.. ||+.+++...
T Consensus 36 lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~ 110 (227)
T cd02011 36 LFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPA 110 (227)
T ss_pred HHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhccc
Confidence 34664 456677765 567777789999999999999974 578999999999999999995 9999999888
Q ss_pred C-CCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCC
Q 004968 242 D-SNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319 (721)
Q Consensus 242 ~-~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (721)
+ .+|+.|++||+++ +.||.... + +..++
T Consensus 111 ~~~~vLpIld~Ng~~i~~pt~~~~-------~-----------------------------~~e~l-------------- 140 (227)
T cd02011 111 TDGAVLPILHLNGYKISNPTILAR-------I-----------------------------SHEEL-------------- 140 (227)
T ss_pred ccCCeEEEEEcCCCcccCCccccc-------c-----------------------------CchhH--------------
Confidence 8 8999999999984 22221000 0 00011
Q ss_pred CccceeeeeCceEEeccCCCCHHHHHHHHHHHHh--------c--------CCCCCE--EEEEEEeccCCCc
Q 004968 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--------L--------GSMGPV--LVHVVTEENRRAE 373 (721)
Q Consensus 320 ~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~--------~--------~~~~P~--lI~v~T~kg~G~~ 373 (721)
..+|++|||..+ .|||||++++.++++++.+ . ...+|. +|.++|-||+.-|
T Consensus 141 --~~~~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 141 --EALFRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred --HHHHHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 346889999998 6899999877665543311 1 113343 7889999999643
No 65
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.66 E-value=5.9e-16 Score=155.72 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|+++++|+++||.||+. +|
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------yg 111 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQ-------------WG 111 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECch-------------hH
Confidence 4588999999999999884 589999999999997 8899999999999999999988875 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .++.. |. . ...+. ..-.++...++++||+++..+ ++.++|.++|+
T Consensus 112 ~~~~-~q~~~----~~------~---~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 160 (196)
T cd02013 112 AEKK-NQVDF----YN------N---RFVGT--------------ELESESFAKIAEACGAKGITV---DKPEDVGPALQ 160 (196)
T ss_pred HHHH-HHHHH----cC------C---Ccccc--------------cCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHH
Confidence 2211 10000 00 0 00000 011245567899999998855 67999999999
Q ss_pred HHHh-cCCCCCEEEEEEEeccCC
Q 004968 350 EVAS-LGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 350 ~a~~-~~~~~P~lI~v~T~kg~G 371 (721)
++.+ ...++|++|++.+.+..+
T Consensus 161 ~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 161 KAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHhcCCCCCeEEEEEEeCcccC
Confidence 9875 113789999999976554
No 66
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.64 E-value=1.9e-15 Score=148.75 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=89.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |..++|++|+.+++|+++||.||+..++
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~------------ 107 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQ------------ 107 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECccccc------------
Confidence 3488999999999999884 589999999999997 7789999999999998888877764211
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+ +.+++.. | .. ....+ .....++...+++++|+++..+ ++.++|.++++
T Consensus 108 -~-~~~~~~~----~------~~--~~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~ 156 (172)
T cd02004 108 -G-LDGQQLS----Y------GL--GLPVT--------------TLLPDTRYDLVAEAFGGKGELV---TTPEELKPALK 156 (172)
T ss_pred -c-hhhhhhh----c------cC--CCcee--------------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 1 0000000 0 00 00000 0001234466889999999854 47999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++++
T Consensus 157 ~a~~--~~~p~liev~i 171 (172)
T cd02004 157 RALA--SGKPALINVII 171 (172)
T ss_pred HHHH--cCCCEEEEEEc
Confidence 9987 48999999986
No 67
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.63 E-value=3e-15 Score=146.12 Aligned_cols=157 Identities=21% Similarity=0.248 Sum_probs=106.8
Q ss_pred CCCcEEEecCCchH-HHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 140 APVDKILWDVGEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 140 ~p~D~iv~d~GH~~-y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
.++|.++.|.|+.. +...++.- . ...+.....+.|++|+++|+|+|++++.+ +++||
T Consensus 11 ~~~~~i~~d~g~~~~~~~~~~~~-----------------~-~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv 68 (168)
T cd00568 11 PEDAIVVNDAGNSAYWAYRYLPL-----------------R-RGRRFLTSTGFGAMGYGLPAAIGAALAAP----DRPVV 68 (168)
T ss_pred CCCCEEEeCCcHHHHHHHHheee-----------------C-CCCcEEeCCCchhhhhhHHHHHHHHHhCC----CCcEE
Confidence 46788999999754 33322210 0 00112223467999999999999999854 88999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
+++|||+++ +.+|+|++|+.+++|+++||.||+..+ .... .++.. + .
T Consensus 69 ~~~GDG~~~--~~~~~l~ta~~~~~~~~~iv~nN~~~~-------------~~~~-~~~~~----~--------~----- 115 (168)
T cd00568 69 CIAGDGGFM--MTGQELATAVRYGLPVIVVVFNNGGYG-------------TIRM-HQEAF----Y--------G----- 115 (168)
T ss_pred EEEcCcHHh--ccHHHHHHHHHcCCCcEEEEEECCccH-------------HHHH-HHHHH----c--------C-----
Confidence 999999998 588999999999999999999999731 1100 00000 0 0
Q ss_pred CcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
+.. .....-.++...+++++|+++..+ ++++++.++++++++ .++|++|+++|
T Consensus 116 ~~~----------~~~~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 116 GRV----------SGTDLSNPDFAALAEAYGAKGVRV---EDPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred CCc----------ccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 000 000011123456789999999854 469999999999986 58999999986
No 68
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.62 E-value=4.4e-15 Score=150.13 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=115.0
Q ss_pred HHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004968 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (721)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~ 208 (721)
+..+|..++. +++.|+.|.| |+.|+...+.-++. +++- ...+.|++|+++|+|+|+++|.
T Consensus 13 ~~~~l~~~l~-~d~iiv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~GsmG~~lpaaiGa~la~ 73 (202)
T cd02006 13 VYEEMNKAFG-RDVRYVTTIGLSQIAGAQMLHVYKP-----RHWI-------------NCGQAGPLGWTVPAALGVAAAD 73 (202)
T ss_pred HHHHHHhhCC-CCeEEEECCcHHHHHHHHhcCcCCC-----CeEE-------------ccCCccchhhhhHHHHhHHhhC
Confidence 3444433333 4566778989 56676644431111 1111 1124589999999999999984
Q ss_pred HHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHH
Q 004968 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (721)
Q Consensus 209 ~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (721)
++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++......+
T Consensus 74 ----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~-------------yg~~~~-~q~~~~~~~~---- 129 (202)
T cd02006 74 ----PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAY-------------LGLIRQ-AQRAFDMDYQ---- 129 (202)
T ss_pred ----CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------HHHHHH-HHHHhcCccc----
Confidence 589999999999997 9999999999999999999999986 343311 1110000000
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEE
Q 004968 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVT 366 (721)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T 366 (721)
...... .+.. .. ...-.++...++++||+++..+ .+.++|.++|+++.+. ..++|+||+|.+
T Consensus 130 -~~~~~~-~~~~---------~~--~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 130 -VNLAFE-NINS---------SE--LGGYGVDHVKVAEGLGCKAIRV---TKPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred -cccccc-cccc---------cc--cCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 000000 0000 00 0000245577899999998866 7899999999998741 147899999998
Q ss_pred eccC
Q 004968 367 EENR 370 (721)
Q Consensus 367 ~kg~ 370 (721)
....
T Consensus 194 ~~~~ 197 (202)
T cd02006 194 ERVT 197 (202)
T ss_pred cccc
Confidence 6543
No 69
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.61 E-value=4.8e-15 Score=150.18 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=111.0
Q ss_pred CCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 140 APVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 140 ~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
.+++.++.|+| |+.|...++.-+ ..+++ ....+.|++|+++|+|+|+++|. ++++||
T Consensus 13 ~~~~ivv~d~G~~~~~~~~~~~~~-----~~~~~-------------~~~~~~gsmG~~lpaAiGa~la~----p~~~vv 70 (205)
T cd02003 13 GDDDVVINAAGSLPGDLHKLWRAR-----TPGGY-------------HLEYGYSCMGYEIAAGLGAKLAK----PDREVY 70 (205)
T ss_pred CCCCEEEECCCcchHHHHHhCCcC-----CCCcE-------------EcCCCcchhhhHHHHHHHHHHhC----CCCeEE
Confidence 36778888988 655655333210 00111 11124588999999999999884 589999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhc-
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKR- 297 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~- 297 (721)
|++|||+|+ |...+|.+|.++++|+++||.||+. +|.+. .+++....+.+.. .....
T Consensus 71 ~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~~~-~~q~~~~~~~~~~------~~~~~~ 128 (205)
T cd02003 71 VLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHG-------------FGCIN-NLQESTGSGSFGT------EFRDRD 128 (205)
T ss_pred EEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCc-------------cHHHH-HHHHHhcCccccc------hhcccc
Confidence 999999997 7778999999999999888888885 33321 1111100000000 00000
Q ss_pred cCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccC
Q 004968 298 IGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
.+... . . .....++...++++||+++..+ +++++|.++|+++.+ .++|++|+|.+.+..
T Consensus 129 ~~~~~------~--~-~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIeV~v~~~~ 187 (205)
T cd02003 129 QESGQ------L--D-GALLPVDFAANARSLGARVEKV---KTIEELKAALAKAKA--SDRTTVIVIKTDPKS 187 (205)
T ss_pred ccccc------c--c-CCCCCCCHHHHHHhCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEeeccc
Confidence 00000 0 0 0011245567899999998866 789999999999987 589999999997654
No 70
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.61 E-value=3.8e-15 Score=148.65 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=94.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+++ |..++|.+|+.+++|+++||.||+. ++
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~-------------~~ 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGS-------------LG 108 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCc-------------cH
Confidence 4588999999999999884 588999999999997 8889999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++......+ . + ....-.++...++++||+++..+ ++.++|.++++
T Consensus 109 ~~~~-~~~~~~~~~~----------~---~-------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 158 (186)
T cd02015 109 MVRQ-WQELFYEGRY----------S---H-------------TTLDSNPDFVKLAEAYGIKGLRV---EKPEELEAALK 158 (186)
T ss_pred HHHH-HHHHHcCCce----------e---e-------------ccCCCCCCHHHHHHHCCCceEEe---CCHHHHHHHHH
Confidence 2211 1000000000 0 0 00000134466889999998855 56899999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.|.+..
T Consensus 159 ~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 159 EALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHh--CCCCEEEEEEeCCCc
Confidence 9987 589999999997543
No 71
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.61 E-value=5e-15 Score=146.59 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=109.3
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.++.|.| |+.|....+.-++. +++ ....+.|.+|+++|+|+|+++|. ++++|||
T Consensus 14 ~~~ii~~d~G~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~ 71 (177)
T cd02010 14 DDDIVLLDVGAHKIWMARYYRTYAP-----NTC-------------LISNGLATMGVALPGAIGAKLVY----PDRKVVA 71 (177)
T ss_pred CCcEEEecCcHHHHHHHHhCCcCCC-----CCE-------------EeCCCChhhhhHHHHHHHHHHhC----CCCcEEE
Confidence 5666778988 56676655442211 011 11125588999999999999984 5899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+++ |+..+|.+|.++++|+++||.||+. +|.+ +..++.. +. ...+
T Consensus 72 i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~-------------~g~~-~~~~~~~----~~----------~~~~ 121 (177)
T cd02010 72 VSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNG-------------YGLI-KWKQEKE----YG----------RDSG 121 (177)
T ss_pred EEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCc-------------chHH-HHHHHHh----cC----------Cccc
Confidence 99999996 8899999999999999999888875 3332 1111100 00 0000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
. .+-.++...+++++|+++..+ .+.++|.++++++.+ .++|++|++.+..
T Consensus 122 ~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 122 V--------------DFGNPDFVKYAESFGAKGYRI---ESADDLLPVLERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred C--------------cCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEecc
Confidence 0 000134466889999998755 689999999999987 5899999999854
No 72
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.61 E-value=2.5e-15 Score=153.46 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=143.6
Q ss_pred cCCCccccCCCCHHHHHHHHHHHH-----HHHHHhHhcCC--CCCCCcccH----HHHHHHHhcccCCCCcEEEecCCch
Q 004968 84 LVENPLRLKSLTIKELKQLAVEIR-----SELSSIVSKTE--KSLKSSLAA----VELTVALHHVFHAPVDKILWDVGEQ 152 (721)
Q Consensus 84 ~i~~p~~~~~~~~~~l~~la~eiR-----~~~~~~~~~~~--Gh~~sslg~----vel~~aL~~vf~~p~D~iv~d~GH~ 152 (721)
.|-.+.+..+++.+-..++.+.+- ..|++-..+.| -+.-.+.|. +...+|| .|+|.|.- -++
T Consensus 73 ~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higSAAAL-----~p~Dli~g--QYR 145 (432)
T KOG1182|consen 73 QIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGSAAAL-----EPQDLIYG--QYR 145 (432)
T ss_pred cccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhhhhhC-----Cccccccc--ccc
Confidence 455566666677665444444332 33444333332 133345554 4455677 78887653 222
Q ss_pred HHHHHHHhCchhhhHHHHhhCCCCCCCCCCC------C-CCCCcC-cCCCcchHHHHHHHHHHHHHcCCC-CeEEEEEcC
Q 004968 153 TYAHKILTGRRSLIHTLRKKDGISGYTSRSE------S-EYDPFN-AGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISN 223 (721)
Q Consensus 153 ~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~e------s-~~d~~~-~G~~G~~is~A~G~AlA~~l~g~~-~~VvaviGD 223 (721)
--+.++++|..-+...-.=||..+.+-++.. | +.++|. +.++.++||.|+|.|.|.|+..++ +.+||++||
T Consensus 146 EaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGd 225 (432)
T KOG1182|consen 146 EAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGD 225 (432)
T ss_pred cCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecC
Confidence 2233444554222111122443333222211 1 223333 477899999999999999987766 789999999
Q ss_pred CCcccchHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcch
Q 004968 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302 (721)
Q Consensus 224 Gal~~G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 302 (721)
|+.++|.++-++|+|+.++-|+||||-||++. |+||..+ |+ |+.+
T Consensus 226 G~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQ---------------------yr-------------~DGI 271 (432)
T KOG1182|consen 226 GAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQ---------------------YR-------------GDGI 271 (432)
T ss_pred CcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHH---------------------hc-------------CCce
Confidence 99999999999999999999999999999993 4444221 10 0000
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEec
Q 004968 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEE 368 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~k 368 (721)
...-.++|++.+ .|||+|.-+++.+.++|+++ ...+|+||+..|.+
T Consensus 272 -------------------a~kG~aYGi~sI-RVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 272 -------------------AVKGPAYGIRSI-RVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred -------------------EEeccccceEEE-EecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 112347899998 68999999999999888764 24689999999987
No 73
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.61 E-value=6.8e-15 Score=169.03 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=112.8
Q ss_pred CCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 141 PVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 141 p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
|+|. |+.|+| |+.|+..++. +..+|++. .+ -+.|.||+++|+|+|+++|. +++.||
T Consensus 373 ~~daiv~~d~G~~~~w~a~~~~-----~~~p~~~~-~s------------~~~GtMG~glPaAIGAkla~----P~r~Vv 430 (550)
T COG0028 373 PDDAIVVTDVGQHQMWAARYFD-----FYRPRRFL-TS------------GGLGTMGFGLPAAIGAKLAA----PDRKVV 430 (550)
T ss_pred CCCeEEEeCCcHHHHHHHHhcc-----cCCCCcEE-cC------------CCCccccchHHHHHHHHhhC----CCCcEE
Confidence 4455 557999 8777763332 22222222 11 24599999999999999985 489999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
|++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+. .+++......
T Consensus 431 ~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~-------------~g~v~----------~~q~~~~~~~------ 479 (550)
T COG0028 431 AIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGG-------------YGMVR----------QWQELFYGGR------ 479 (550)
T ss_pred EEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCc-------------cccch----------HHHHHhcCCC------
Confidence 999999997 9999999999999999999999996 34331 1111111100
Q ss_pred CcchHHHHHHHHHHhhcccCCC-ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQ-GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~-~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
+....+.+. +..++|+||+...++ .+.++|.++|+++.+ .++|++|++.+.+.
T Consensus 480 -------------~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 480 -------------YSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEALEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred -------------cceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEecCc
Confidence 000011122 456889999999866 599999999999998 58999999999765
No 74
>PRK06163 hypothetical protein; Provisional
Probab=99.59 E-value=1.6e-14 Score=145.58 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc-CCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL-DSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~-~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|+++ ++|+++||.||+..
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~y------------- 115 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVY------------- 115 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCch-------------
Confidence 4588999999999999984 589999999999996 889999999877 58999999999752
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-EEeccCCCCHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISV 347 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-~~g~vdGhd~~~l~~a 347 (721)
|.... +. .. ..-.++...++++||++ ...+ .+.++|..+
T Consensus 116 g~~~~-----~~-----------------~~---------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~a 155 (202)
T PRK06163 116 QITGG-----QP-----------------TL---------------TSQTVDVVAIARGAGLENSHWA---ADEAHFEAL 155 (202)
T ss_pred hhcCC-----cc-----------------CC---------------CCCCCCHHHHHHHCCCceEEEe---CCHHHHHHH
Confidence 21000 00 00 00013345688999997 4434 689999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccCCCc
Q 004968 348 LQEVASLGSMGPVLVHVVTEENRRAE 373 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~G~~ 373 (721)
|+++.+ .++|++|+|++......+
T Consensus 156 l~~a~~--~~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 156 VDQALS--GPGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHh--CCCCEEEEEEecCCCCCC
Confidence 999987 589999999997655433
No 75
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.58 E-value=8.8e-15 Score=144.99 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=93.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+++ |. +++|.+|+++++|+++||.||+...+-..++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 4589999999999999995 488999999999995 55 7999999999999999999888532111000000000
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. . ......++...+++++|+++..+.++++++++.+++
T Consensus 123 ~--------------------~----------------------~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al 160 (178)
T cd02008 123 T--------------------L----------------------TEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREEL 160 (178)
T ss_pred c--------------------c----------------------cCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHH
Confidence 0 0 000001234568899999999887999999999999
Q ss_pred HHHHhcCCCCCEEEEEEE
Q 004968 349 QEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T 366 (721)
+++++ .++|++|+++.
T Consensus 161 ~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 161 KEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHh--CCCCEEEEEeC
Confidence 99987 58999999875
No 76
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.58 E-value=2.3e-14 Score=143.09 Aligned_cols=122 Identities=18% Similarity=0.299 Sum_probs=93.8
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcc
Q 004968 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTS 267 (721)
Q Consensus 189 ~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~ 267 (721)
+..|++|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+++++++ |+++||.||+..++.
T Consensus 45 ~~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~--------- 109 (188)
T cd03371 45 LTVGSMGHASQIALGIALAR----PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV--------- 109 (188)
T ss_pred eecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc---------
Confidence 45699999999999999985 488999999999997 88899999999985 798888888853110
Q ss_pred hhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
+.. . ..+ ..++...+++++|+.+...+ ++.++|.++
T Consensus 110 -~~~-------~-----------------~~~-----------------~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 110 -GGQ-------P-----------------TVS-----------------FDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred -CCc-------C-----------------CCC-----------------CCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 000 0 000 01233567899999874334 589999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccCC
Q 004968 348 LQEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
++++.+ .++|++|++.+.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999987 5889999999988776
No 77
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.57 E-value=2.8e-14 Score=141.22 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=104.5
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.++.|.| |+.|...++..+. |. +.....+ |.+|+++|+|+|+++|. ++++|||
T Consensus 16 ~~~~iv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~ 72 (178)
T cd02002 16 EDAIIVDEAVTNGLPLRDQLPLTR---------------PG---SYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVA 72 (178)
T ss_pred CCeEEEecCCcccHHHHHhcccCC---------------CC---CeeccCC-ccccchHHHHHHHHhcC----CCCeEEE
Confidence 4567788988 6556664443211 00 1111135 99999999999999985 4889999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+++ |..++|++|+.+++|+++||.||+. ++.. +.+++....... .. ....+
T Consensus 73 i~GDG~f~--~~~~el~ta~~~~~p~~~iV~nN~~-------------~~~~-~~~~~~~~~~~~----~~----~~~~~ 128 (178)
T cd02002 73 IIGDGSFM--YTIQALWTAARYGLPVTVVILNNRG-------------YGAL-RSFLKRVGPEGP----GE----NAPDG 128 (178)
T ss_pred EEcCchhh--ccHHHHHHHHHhCCCeEEEEEcCcc-------------HHHH-HHHHHHHcCCCc----cc----ccccc
Confidence 99999997 5568999999999999999999984 2221 111100000000 00 00000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
.. ...-.++...+++++|+++..+ ++.+++.++++++.+ .++|++||+++
T Consensus 129 ~~------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 129 LD------------LLDPGIDFAAIAKAFGVEAERV---ETPEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred cc------------cCCCCCCHHHHHHHcCCceEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 00 0000133456889999998754 459999999999987 58999999874
No 78
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.57 E-value=2.1e-14 Score=142.25 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=109.2
Q ss_pred HHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004968 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (721)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~ 208 (721)
+..+|....+ +++.++.|.| |+.++...++-++. +++. ...+.|.+|+++|+|+|+++|.
T Consensus 7 ~~~~l~~~~~-~~~ii~~d~g~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~~~~~aiGa~~a~ 67 (178)
T cd02014 7 VAAELNKRAP-DDAIFTIDVGNVTVWAARHLRMNGK-----QRFI-------------LSGLLATMGNGLPGAIAAKLAY 67 (178)
T ss_pred HHHHHHhHCC-CCeEEEEcCcHHHHHHHHhcccCCC-----CcEE-------------cCCCCchhhhHHHHHHHHHHhC
Confidence 3344433332 4455668998 66666644432110 1111 1124488999999999999884
Q ss_pred HHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHH
Q 004968 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (721)
Q Consensus 209 ~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (721)
++++||+++|||+++ +...+|.+|..+++|+++||.||+. ++.+ +..++....+.
T Consensus 68 ----~~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~-------------~~~~-~~~~~~~~~~~----- 122 (178)
T cd02014 68 ----PDRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSD-------------LGFI-KWEQEVMGQPE----- 122 (178)
T ss_pred ----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCc-------------hhHH-HHHHHHhcCCc-----
Confidence 588999999999997 6677899999999999999999985 2221 10000000000
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
.+. ..-.++...+++++|+++... .+.+++.++++++.+ .++|++|++.|..
T Consensus 123 ---------~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~~l~~a~~--~~~p~liev~~~~ 174 (178)
T cd02014 123 ---------FGV--------------DLPNPDFAKIAEAMGIKGIRV---EDPDELEAALDEALA--ADGPVVIDVVTDP 174 (178)
T ss_pred ---------eec--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEeCC
Confidence 000 000123456889999998754 578999999999987 5899999999854
No 79
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.55 E-value=3.2e-14 Score=138.11 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=90.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
..|++|+++|+|+|+++|. +++|||++|||+|+ |..++|.+++.++ +|+++||.||+...
T Consensus 40 ~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g------------ 100 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYG------------ 100 (157)
T ss_pred eecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccc------------
Confidence 3588999999999999984 28899999999996 7888999999985 99999998887521
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.... + + .. ...++...+++++|+++..+ +++++|.+++
T Consensus 101 -~~~~-----~--~---------------~~----------------~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 138 (157)
T cd02001 101 -STGG-----Q--P---------------TP----------------SSNVNLEAWAAACGYLVLSA---PLLGGLGSEF 138 (157)
T ss_pred -ccCC-----c--C---------------CC----------------CCCCCHHHHHHHCCCceEEc---CCHHHHHHHH
Confidence 1100 0 0 00 00133456788999998855 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEecc
Q 004968 349 QEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg 369 (721)
+++.+ .++|++|++.+.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99987 58999999999664
No 80
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.54 E-value=6.3e-14 Score=138.98 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=89.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
..|++|+++|+|+|+|+|.+ ++|||++|||+++ |..+++.+|+.++ .|+++||.||+..++...+. .
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~----~- 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQP----T- 107 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccCCCC----C-
Confidence 35899999999999999853 7899999999996 7778999999998 57888876666422100000 0
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. .. ..++...++++||+.+. .++| +.+++.+++
T Consensus 108 ~----------------------------~~-----------------~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al 140 (179)
T cd03372 108 H----------------------------AG-----------------KKTDLEAVAKACGLDNV-ATVA-SEEAFEKAV 140 (179)
T ss_pred C----------------------------CC-----------------CCCCHHHHHHHcCCCeE-EecC-CHHHHHHHH
Confidence 0 00 01233557889999997 4555 899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRRA 372 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G~ 372 (721)
++++ ++|++|++.|.++.+.
T Consensus 141 ~~a~----~gp~lIev~~~~~~~~ 160 (179)
T cd03372 141 EQAL----DGPSFIHVKIKPGNTD 160 (179)
T ss_pred HHhc----CCCEEEEEEEcCCCCC
Confidence 9886 5799999999887763
No 81
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.53 E-value=9.3e-15 Score=144.42 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=91.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+++|. +++|||++|||+++ |+.++|.+|.++++|+++||.||+.. |
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~-------------g 108 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGG-------------G 108 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCC-------------c
Confidence 4588999999999999983 78899999999996 88999999999999999999999852 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. ++++.......|.. ..... ..++...++|+||+++..+ ++.++|.++|+
T Consensus 109 ~~-~~~~~~~~~~~~~~------------------------~~~~~-~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 159 (175)
T cd02009 109 IF-SLLPQASFEDEFER------------------------LFGTP-QGLDFEHLAKAYGLEYRRV---SSLDELEQALE 159 (175)
T ss_pred hh-eeccCCcccchhhh------------------------hhcCC-CCCCHHHHHHHcCCCeeeC---CCHHHHHHHHH
Confidence 11 00000000000000 00000 1234567899999999866 68999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++.+
T Consensus 160 ~a~~--~~~p~lIev~v 174 (175)
T cd02009 160 SALA--QDGPHVIEVKT 174 (175)
T ss_pred HHHh--CCCCEEEEEeC
Confidence 9987 58999999986
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.51 E-value=1.8e-13 Score=135.80 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=89.6
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
.|++|+++|+|+|+++|. +++|||++|||+|+ |..++|.+|+.++ +|+++||.||+..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg------------- 100 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYG------------- 100 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccc-------------
Confidence 588999999999999983 78999999999996 7779999999999 59999999998521
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +. ... .-.++...+++++|+.+...+ ++.++|.++|+
T Consensus 101 ~~~~-----q~-----------------~~~---------------~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~ 141 (181)
T TIGR03846 101 STGN-----QP-----------------TPA---------------SRRTDLELVAKAAGIRNVEKV--ADEEELRDALK 141 (181)
T ss_pred cccC-----cC-----------------CCC---------------CCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH
Confidence 1100 00 000 001234567899999987522 78999999997
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+.+ .++|.+|++.+.++.
T Consensus 142 -a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 142 -ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred -HHc--CCCCEEEEEEeCCCC
Confidence 765 589999999997654
No 83
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.50 E-value=9.4e-14 Score=138.27 Aligned_cols=124 Identities=17% Similarity=0.129 Sum_probs=88.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|+++++|+++||.||+...
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~------------- 108 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYT------------- 108 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcE-------------
Confidence 4589999999999999985 478999999999996 677779999999988888777777521
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeC----ceEEeccCCCCHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG----LYYIGPVDGHNIEDLI 345 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G----~~~~g~vdGhd~~~l~ 345 (721)
.+. .+++.. ..+ .....++...+++++| +++..+ ++.+++.
T Consensus 109 ~~~-~~~~~~--~~~-----------------------------~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el~ 153 (183)
T cd02005 109 IER-AIHGPE--ASY-----------------------------NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELD 153 (183)
T ss_pred EEE-EeccCC--cCc-----------------------------ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHHH
Confidence 110 000000 000 0000133456788898 677655 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEec
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~k 368 (721)
++|+++.+. .++|+|||+.|.+
T Consensus 154 ~al~~a~~~-~~~p~liev~~~~ 175 (183)
T cd02005 154 EALKDALFN-RDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHhc-CCCcEEEEEEcCc
Confidence 999998862 3789999999954
No 84
>PRK06154 hypothetical protein; Provisional
Probab=99.49 E-value=1.7e-13 Score=159.14 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=115.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEE-ecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv-~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
+....+...|...+. |+|.|+ .|.| |+.|...++.-.. ++++. ...+.|++|+++|+|+
T Consensus 381 l~p~~~~~~l~~~l~-~~d~iv~~D~G~~~~~~~~~~~~~~-----p~~~~-------------~~~~~gsmG~glpaai 441 (565)
T PRK06154 381 INPYRVVWELQHAVD-IKTVIITHDAGSPRDQLSPFYVASR-----PGSYL-------------GWGKTTQLGYGLGLAM 441 (565)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEECCcccHHHHHHhCCCCC-----CCeEE-------------ccCCCcccccHHHHHH
Confidence 333344444444333 456665 5999 6667664432110 11111 0113488999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+++|. ++++|||++|||+|+ |+.++|.+|+++++|+++||.||+.. |.+..
T Consensus 442 Ga~la~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~y-------------g~~~~--------- 493 (565)
T PRK06154 442 GAKLAR----PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSM-------------GGYDK--------- 493 (565)
T ss_pred HHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------ceeeh---------
Confidence 999984 589999999999996 99999999999999999999999852 22211
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (721)
+++... . ...+ ....+++..++|+||.++..+ .+.++|.++|+++.+. ..++|+|
T Consensus 494 -~~~~~~-~----~~~~---------------~~~~~df~~lA~a~G~~g~~V---~~~~el~~al~~a~~~~~~~~p~l 549 (565)
T PRK06154 494 -VMPVST-T----KYRA---------------TDISGDYAAIARALGGYGERV---EDPEMLVPALLRALRKVKEGTPAL 549 (565)
T ss_pred -hhhhhc-C----cccc---------------cCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhccCCCeEE
Confidence 000000 0 0000 001235567899999999866 7899999999998741 1478999
Q ss_pred EEEEEeccC
Q 004968 362 VHVVTEENR 370 (721)
Q Consensus 362 I~v~T~kg~ 370 (721)
|+|.+.+..
T Consensus 550 Iev~v~~~~ 558 (565)
T PRK06154 550 LEVITSEET 558 (565)
T ss_pred EEEEeChHH
Confidence 999996543
No 85
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.48 E-value=2.2e-13 Score=159.03 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=116.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|+.|.| |+.|....+.-. ..+++- ...+.|+||+++|+|+|
T Consensus 369 l~p~~~~~~l~~~l-~~d~ivv~D~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~gsmG~glpaaiG 429 (588)
T TIGR01504 369 VKPQRVYEEMNKAF-GRDVCYVTTIGLSQIAGAQMLHVY-----KPRHWI-------------NCGQAGPLGWTIPAALG 429 (588)
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCcHHHHHHHHhcccc-----CCCcEE-------------eCCccccccchHhHHHh
Confidence 44444444454443 35677788999 555665443211 111111 00134889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++....+.
T Consensus 430 a~lA~----pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~-------------yg~i~~-~q~~~~~~~ 489 (588)
T TIGR01504 430 VCAAD----PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAY-------------LGLIRQ-AQRAFDMDY 489 (588)
T ss_pred hhhhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hHHHHH-HHHHhcccc
Confidence 99984 589999999999997 8899999999999999999999985 444321 111000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
+ .... ...+... -.+...++...++|+||.++..+ ++.++|.++|+++.+. ..++|+|
T Consensus 490 ~-----~~~~-~~~~~~~-----------~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~~~~~~~p~l 549 (588)
T TIGR01504 490 C-----VQLA-FENINSS-----------EVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAFEQAKALMAEHRVPVV 549 (588)
T ss_pred c-----ceee-ccccccc-----------cccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 0 0000 0000000 00001245567899999998866 7899999999998741 1489999
Q ss_pred EEEEEec
Q 004968 362 VHVVTEE 368 (721)
Q Consensus 362 I~v~T~k 368 (721)
|+|.+.+
T Consensus 550 IeV~i~~ 556 (588)
T TIGR01504 550 VEVILER 556 (588)
T ss_pred EEEEecc
Confidence 9999954
No 86
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.47 E-value=1.2e-13 Score=142.57 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=93.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|++++ .++++|||++|||++. .|..++|.+|++++.|+++||.||+..++...+.......+.
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~-~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~ 135 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTA-DIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGA 135 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHH-hhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCC
Confidence 36888888888887655 5689999999999951 388899999999999999999999964321111111100110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... . ...+..+. -.....++...+++++|+.++..+..+++++|.+++++
T Consensus 136 ~~~------~---------------~~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~ 185 (235)
T cd03376 136 WTT------T---------------TPVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKK 185 (235)
T ss_pred Eee------c---------------CCCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 000 0 00000000 00001134467899999998765566899999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|+||++.+.
T Consensus 186 a~~--~~gP~lIev~~~ 200 (235)
T cd03376 186 ALS--IEGPAYIHILSP 200 (235)
T ss_pred HHh--CCCCEEEEEECC
Confidence 988 589999999874
No 87
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.47 E-value=2.8e-11 Score=140.47 Aligned_cols=431 Identities=16% Similarity=0.117 Sum_probs=260.2
Q ss_pred CCCcchHHHHHHHHHHHH-HcCC-----CCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCcc
Q 004968 192 GHGCNSVSAGLGMAVARD-IKGK-----RECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIE 261 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~-l~g~-----~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~ 261 (721)
.|+=.-=|..-|++-|.. +.+. ..-.|++=||++| .+|+++|.||++..++.+ .|.||.||++ ...|.-
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqi-GftT~p 697 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQV-GFTTAP 697 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCc-ccccCc
Confidence 344444556778887753 2221 2345677899997 489999999999999988 9999999997 222211
Q ss_pred CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCH
Q 004968 262 ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNI 341 (721)
Q Consensus 262 ~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~ 341 (721)
..+ .| ..|. ..+++.++...+ .|||+|+
T Consensus 698 -----~~~-Rs---------s~y~------------------------------------td~ak~~~~Pif-hVNGdDp 725 (1228)
T PRK12270 698 -----ESS-RS---------SEYA------------------------------------TDVAKMIQAPIF-HVNGDDP 725 (1228)
T ss_pred -----ccc-cc---------chhh------------------------------------HHHHhhcCCCEE-eECCCCH
Confidence 000 00 0010 123344555665 7899999
Q ss_pred HHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccccc-c-ccccccccC-----------------------------
Q 004968 342 EDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQKS-E-AIEKQQEGA----------------------------- 388 (721)
Q Consensus 342 ~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~-~-~~~~~Hg~~----------------------------- 388 (721)
+++.++.+.|.++ ..++|++|++.+++-+|+--.+.. . .+.-|.-+.
T Consensus 726 eAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~ 805 (1228)
T PRK12270 726 EAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALR 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999988777543 247899999999999987322110 0 011111110
Q ss_pred --------CC----CCCC-----CC--------C-----CCcccHHH---------------------------------
Q 004968 389 --------SD----SNSL-----PF--------G-----NYSRTYDD--------------------------------- 405 (721)
Q Consensus 389 --------~f----~~g~-----~~--------~-----~~~~~~~~--------------------------------- 405 (721)
-| +..+ +. . +-.....+
T Consensus 806 dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g 885 (1228)
T PRK12270 806 DYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREG 885 (1228)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcC
Confidence 01 0000 00 0 00000001
Q ss_pred ----HHHHH--HHHHHHcCCCeEEEecCCCCccC------------------hHHHHHhCCC--cEeeccccHHHHHHHH
Q 004968 406 ----CFIEA--LVMEAEKDKDIVVVHAGMEMDLS------------------LQLFQEKFPE--RYFDVGMAEQHAVTFS 459 (721)
Q Consensus 406 ----~~~~~--L~~~~~~d~~iv~i~ad~~~~~~------------------l~~f~~~fp~--R~~d~GIaE~~~v~~A 459 (721)
+|++. +-.++.+...|-..+.|...||= |..|... .. -++|..++|-+++||=
T Consensus 886 ~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~GFE 964 (1228)
T PRK12270 886 GIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMGFE 964 (1228)
T ss_pred CccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhccc
Confidence 12222 23344455556666666654431 1122111 13 4579999999999999
Q ss_pred HHHHhCCCe--eEEEe-cHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcCcHHHHHH--HccCCCc
Q 004968 460 AGLACGGLK--PFCII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGAFDITF--MSCLPNM 528 (721)
Q Consensus 460 aGlA~~G~~--p~~~t-ys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~--~~~iPnl 528 (721)
.|.+.+.-- .+.+- |.+|. |-.+|+.+...- .|.-.|++...| |.-| .||-|+..---.| +..-.||
T Consensus 965 YGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH-GyEG-QGPdHSSaRiERfLqlcAe~nm 1042 (1228)
T PRK12270 965 YGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GYEG-QGPDHSSARIERFLQLCAEGNM 1042 (1228)
T ss_pred eeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC-CcCC-CCCCcchHHHHHHHHhhccCCe
Confidence 999999644 34443 88886 788898765532 256778888887 5555 4899996432233 4445799
Q ss_pred EEEeeCCHHHHHHHHHH-HHHhCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEe-----C--CcEEEEEechhh
Q 004968 529 IVMAPSDEDELVDMVAT-VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVE-----G--KDVALLGYGAMV 599 (721)
Q Consensus 529 ~V~~Psd~~E~~~~l~~-a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~e-----G--~dv~Iva~Gs~v 599 (721)
+|..|++|.....+|+. |+....+|.+++.||+...... ....-..+.-|+++ ||.+ + -+=+|+|+|-..
T Consensus 1043 ~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~Ka-A~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvY 1121 (1228)
T PRK12270 1043 TVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKA-AVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLY 1121 (1228)
T ss_pred EEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchh-hcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhH
Confidence 99999999999999975 5455678999999998753210 00011222234433 2221 1 134688999999
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC----CeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceE
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWR 674 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~----~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~ 674 (721)
...++..+. ...-++-+|.+-.|.||+.+.|++.+.++ +.+.+-||-. .|-|. .++-.|.+. ++...+++
T Consensus 1122 YdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~lr 1196 (1228)
T PRK12270 1122 YDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRRLR 1196 (1228)
T ss_pred HHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCCce
Confidence 877665432 22346899999999999999998876554 5567777765 57775 333333322 22245677
Q ss_pred EEecCCcccc
Q 004968 675 PIVLPDNYIE 684 (721)
Q Consensus 675 ~~g~~d~f~~ 684 (721)
+++-|..-.+
T Consensus 1197 ~VsRpasasP 1206 (1228)
T PRK12270 1197 RVSRPASASP 1206 (1228)
T ss_pred EecCCcccCC
Confidence 7776654433
No 88
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.47 E-value=3.6e-13 Score=156.15 Aligned_cols=126 Identities=12% Similarity=0.236 Sum_probs=95.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+++|. + +++|||++|||+|+ |..++|.+|.++++|+++||.||+. +
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------~ 454 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSK-------------L 454 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCc-------------c
Confidence 3599999999999999884 4 78999999999997 8999999999999999999999986 3
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|.+.. .+ +.. .. ...+ .++-.++...++++||+++..+ .+.++|.+++
T Consensus 455 g~i~~-~q---------~~~--~~---~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 502 (549)
T PRK06457 455 GMIKF-EQ---------EVM--GY---PEWG--------------VDLYNPDFTKIAESIGFKGFRL---EEPKEAEEII 502 (549)
T ss_pred chHHH-HH---------HHh--cC---Cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 33311 11 000 00 0000 0111245567899999999866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEec
Q 004968 349 QEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~k 368 (721)
+++.+ .++|+||+|+|..
T Consensus 503 ~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHh--CCCCEEEEEEeCc
Confidence 99987 5889999999964
No 89
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.47 E-value=4e-13 Score=156.85 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=97.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~-------------~~ 495 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRY-------------LG 495 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCc-------------ch
Confidence 4589999999999999995 589999999999996 9999999999999999999999986 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. +++...... ..+. .. ..++...++|+||+++..+ ++.++|.++|
T Consensus 496 ~i~~----------~q~~~~~~~----~~~~--------------~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~al 544 (587)
T PRK06965 496 MVRQ----------WQEIEYSKR----YSHS--------------YMDALPDFVKLAEAYGHVGMRI---EKTSDVEPAL 544 (587)
T ss_pred HHHH----------HHHHhcCCC----cccc--------------CCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 3311 111000000 0000 00 0134567899999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+. .++|+||+|.+.+..
T Consensus 545 ~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 545 REALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHhc-CCCcEEEEEEecccc
Confidence 999763 378999999997643
No 90
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.47 E-value=4.5e-13 Score=155.03 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=117.2
Q ss_pred cHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 126 AAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 126 g~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
....+...|...++ +++.|+.|.| |+.|....+.-. ..+++ ....+.|++|+++|+|+|+
T Consensus 360 ~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~-----~~~~~-------------~~~~~~g~mG~~lpaaiGa 420 (539)
T TIGR02418 360 HPLEIIKAMQAIVT-DDVTVTVDMGSHYIWMARYFRSY-----RARHL-------------LISNGMQTLGVALPWAIGA 420 (539)
T ss_pred CHHHHHHHHHhhCC-CCCEEEECCcHHHHHHHHhcccC-----CCCce-------------ecCCCccccccHHHHHHHH
Confidence 33445555544443 5678888998 655665332200 00110 0112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+. +.++ ..|
T Consensus 421 ~la~----~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~-~~~~----~~~ 476 (539)
T TIGR02418 421 ALVR----PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNG-------------YNMVE-FQEE----MKY 476 (539)
T ss_pred HHhC----CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCc-------------chHHH-HHHH----Hhc
Confidence 9984 588999999999997 9999999999999999999999985 33221 0000 000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. ...+. ++-.++...++++||+++..+ ++.++|.++|+++.+ .++|++|+|
T Consensus 477 ~----------~~~~~--------------~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~--~~~p~lIev 527 (539)
T TIGR02418 477 Q----------RSSGV--------------DFGPIDFVKYAESFGAKGLRV---ESPDQLEPTLRQAME--VEGPVVVDI 527 (539)
T ss_pred C----------Ccccc--------------cCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 0 00000 111245567899999998866 789999999999987 589999999
Q ss_pred EEecc
Q 004968 365 VTEEN 369 (721)
Q Consensus 365 ~T~kg 369 (721)
.+.+.
T Consensus 528 ~v~~~ 532 (539)
T TIGR02418 528 PVDYS 532 (539)
T ss_pred EecCc
Confidence 99653
No 91
>PRK05858 hypothetical protein; Provisional
Probab=99.47 E-value=5.2e-13 Score=154.61 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=116.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |..|...++.-+. .+++. ...+.|++|+++|+|+|
T Consensus 358 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~-----p~~~~-------------~~~~~gsmG~~lp~aiG 418 (542)
T PRK05858 358 IHPMRVYGELAPLLD-RDAIVIGDGGDFVSYAGRYIDPYR-----PGCWL-------------DPGPFGCLGTGPGYALA 418 (542)
T ss_pred cCHHHHHHHHHHhcC-CCeEEEECCcHHHHHHHHHccccC-----CCCEE-------------eCCCccccccchhHHHH
Confidence 343445555544443 4556667887 6556654332110 11111 01134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+....
T Consensus 419 a~la~----p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~~~~-------- 471 (542)
T PRK05858 419 ARLAR----PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGI-------------WGLEKHPM-------- 471 (542)
T ss_pred HHHhC----CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCc-------------hhhHHHHH--------
Confidence 99985 589999999999997 8899999999999999999999985 33321100
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+..+ +.+. ..+. -.++...++++||.++..+ .+.++|.++++++.+ .++|+||
T Consensus 472 -~~~~----------~~~~----------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 525 (542)
T PRK05858 472 -EALY----------GYDV----------AADLRPGTRYDEVVRALGGHGELV---TVPAELGPALERAFA--SGVPYLV 525 (542)
T ss_pred -HHhc----------CCcc----------ccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCcEEE
Confidence 0000 0000 0011 1245567899999998766 789999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
++.|.+.
T Consensus 526 ev~~~~~ 532 (542)
T PRK05858 526 NVLTDPS 532 (542)
T ss_pred EEEECCC
Confidence 9999765
No 92
>PRK08611 pyruvate oxidase; Provisional
Probab=99.46 E-value=6.2e-13 Score=154.93 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=96.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+|+++++|+++||.||+. +|
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~-------------~g 466 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQ-------------LA 466 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 3489999999999999984 589999999999997 8999999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+. ..+..... . ..+ ..+-.++...++++||.++..+ ++.++|.++|+
T Consensus 467 ~i~-~~q~~~~~-------------~-~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (576)
T PRK08611 467 FIK-YEQQAAGE-------------L-EYA--------------IDLSDMDYAKFAEACGGKGYRV---EKAEELDPAFE 514 (576)
T ss_pred HHH-HHHHHhcC-------------C-ccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 331 11100000 0 000 0111245577899999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|+||+|.+.+..
T Consensus 515 ~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 515 EALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999997543
No 93
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.46 E-value=4.6e-13 Score=156.03 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=117.2
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-++ .+++- ..-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~~-----p~~~~-------------~~~~~g~mG~glpaaiG 432 (574)
T PRK07979 372 IKPQAVIETLWRLTK-GDAYVTSDVGQHQMFAALYYPFDK-----PRRWI-------------NSGGLGTMGFGLPAALG 432 (574)
T ss_pred cCHHHHHHHHHhhcC-CCEEEEeCCcHHHHHHHHhcccCC-----CCeEE-------------eCCCccchhhHHHHHHH
Confidence 445555555654432 4566778998 5666653332111 01111 11144899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+... ++..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~-------------yg~i~~~-q~~~---- 488 (574)
T PRK07979 433 VKMAL----PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRY-------------LGMVKQW-QDMI---- 488 (574)
T ss_pred HHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hhHHHHH-HHHh----
Confidence 99984 588999999999996 9999999999999999999999986 4443211 0000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (721)
|. +. .. .... -.++...++|+||.++..+ .+.++|.++|+++.+. +.++|.|
T Consensus 489 ~~-------------~~-~~---------~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~al~~a~~~~~~~~p~l 542 (574)
T PRK07979 489 YS-------------GR-HS---------QSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESKLSEALEQVRNNRLVF 542 (574)
T ss_pred cC-------------Cc-cc---------cccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhccCCCCcEE
Confidence 00 00 00 0000 0135567899999998866 7899999999998762 1278999
Q ss_pred EEEEEec
Q 004968 362 VHVVTEE 368 (721)
Q Consensus 362 I~v~T~k 368 (721)
|+|.+.+
T Consensus 543 IeV~i~~ 549 (574)
T PRK07979 543 VDVTVDG 549 (574)
T ss_pred EEEEECC
Confidence 9999965
No 94
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.46 E-value=7e-12 Score=154.78 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=175.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS 523 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~ 523 (721)
.|+.+ =+|.++++++.|++.+|.+.+++|.+..+..+.+.+ ..++..++|+|+.+..+++.+..+..+.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l-~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNM-YKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHH-HHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 45554 699999999999999999999999998888888877 3556679999998855444333456777777865555
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc----ccccCCCCC------------Cc---------c
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI----VRTDLPGYR------------GI---------P 575 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~----~~~~~p~~~------------~~---------~ 575 (721)
. -|+.|++|+|.+|+.++...|++. ...|+++.++--.. ...++++.+ .+ +
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 4 589999999999999999888764 45699887753210 000010000 00 0
Q ss_pred ee--------------------------------------cCc----eEE-EEeCCcEEEEEechhhHHHHHHHHHHHhC
Q 004968 576 IE--------------------------------------IGK----GKV-LVEGKDVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 576 ~~--------------------------------------~gk----~~v-l~eG~dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
.. .|+ .+. -.++++.+||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 00 011 111 12357999999999999999999999999
Q ss_pred CCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCC-CC----ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 613 GIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGS-IG----GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~-~g----G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
|++|++|.+|.++||+.+.|++.+ ++.+.|+|+|.+. .| .+...|...+...+ + ..+.. ++ -.|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~~v-~~--~~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMPVI-LG--GRYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCCEE-EE--EEECCCC
Confidence 999999999999999999998865 6889999999985 22 47777777665431 0 11111 11 1222212
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
..++++.|.+.+.++..
T Consensus 364 --------~~~tp~~i~~i~~~l~~ 380 (1165)
T TIGR02176 364 --------KEFTPAMVKAVFDNLSG 380 (1165)
T ss_pred --------CCCCHHHHHHHHHHHhc
Confidence 12678888887777653
No 95
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.46 E-value=3e-11 Score=132.32 Aligned_cols=235 Identities=15% Similarity=0.200 Sum_probs=163.7
Q ss_pred CCCeEEEecCCCCccChH---HHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc
Q 004968 418 DKDIVVVHAGMEMDLSLQ---LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494 (721)
Q Consensus 418 d~~iv~i~ad~~~~~~l~---~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l 494 (721)
.+++++.-+=.+.+.-++ .+..+....|+.+ =+|.++++++.|++.+|.|.+++|++..+..+.+.+ ..++++++
T Consensus 20 ~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~ 97 (365)
T COG0674 20 GCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTET 97 (365)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccC
Confidence 457777665444443333 3333444566665 899999999999999999999999998888888876 68899999
Q ss_pred ceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCccc----c-
Q 004968 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAIVR----T- 566 (721)
Q Consensus 495 pVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~~~----~- 566 (721)
|++++...+++....-||+..+.|+...+. .++.+++-+|.+|+.++...|++.++ -|+++.++...... .
T Consensus 98 P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~ 176 (365)
T COG0674 98 PLVIVVAQRPLPSTGLPIKGDQSDLMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIE 176 (365)
T ss_pred CeEEEEeccCcCCCcccccccHHHHHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeee
Confidence 999988655554443469999999877776 48888888899999999999987654 48887653221100 0
Q ss_pred ---------cCCCCCCc-------ceecC--------------------------------------c----eEEEE-eC
Q 004968 567 ---------DLPGYRGI-------PIEIG--------------------------------------K----GKVLV-EG 587 (721)
Q Consensus 567 ---------~~p~~~~~-------~~~~g--------------------------------------k----~~vl~-eG 587 (721)
.++..+.+ +.-.| + +.+.. ++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~D 256 (365)
T COG0674 177 LLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYED 256 (365)
T ss_pred cCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCC
Confidence 00000000 00000 0 01111 46
Q ss_pred CcEEEEEechhhHHHHHHHHHH-HhCCCCeEEeecCccccccHHHHHHHhccCC--eEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALL-SKLGIDVTVADARFCKPLDIKLVRELCQNHT--FLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L-~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~--~vvvvEe~~~gG~gs~ 656 (721)
++++||+||+....+.+|+..+ +++|++++++.+|+++||+.+.|++++++.+ .|+.+|-+. |++++-
T Consensus 257 Ae~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~-g~~~~~ 327 (365)
T COG0674 257 AEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISL-GGLAEP 327 (365)
T ss_pred cCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCC-ccchhh
Confidence 7899999998887777776655 5889999999999999999999999988776 444455443 554433
No 96
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.45 E-value=6.7e-13 Score=155.84 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=117.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ |++.|+.|+| |+.|...++. .+ .+++- ...+.|.+|+++|+|+|
T Consensus 387 l~~~~v~~~l~~~~--~d~i~~~D~G~~~~~~~~~~~-~~-----p~~~~-------------~s~~~g~mG~glpaAiG 445 (616)
T PRK07418 387 IYPQEVLLAVRDLA--PDAYYTTDVGQHQMWAAQFLR-NG-----PRRWI-------------SSAGLGTMGFGMPAAMG 445 (616)
T ss_pred cCHHHHHHHHHhhC--CCcEEEECChHHHHHHHHhhh-cC-----CCeEE-------------cCCCccccccHHHHHHH
Confidence 44444555554433 4577778999 5556654332 10 01111 01245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .++......
T Consensus 446 A~lA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~-------------~g~i~~-~q~~~~~~~ 505 (616)
T PRK07418 446 VKVAL----PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGW-------------QGMVRQ-WQESFYGER 505 (616)
T ss_pred HHHhC----CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-HHHHhcCCC
Confidence 99984 589999999999997 8999999999999999999999996 343311 111000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
| .+.+. ..-.++...++++||.++..+ ++.++|.++|+++.+ .++|+||+
T Consensus 506 ~-------------~~~~~------------~~~~~d~~~~A~a~G~~g~~V---~~~~el~~al~~a~~--~~~p~lIe 555 (616)
T PRK07418 506 Y-------------SASNM------------EPGMPDFVKLAEAFGVKGMVI---SERDQLKDAIAEALA--HDGPVLID 555 (616)
T ss_pred c-------------eeecC------------CCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00000 000134567899999999866 789999999999987 58899999
Q ss_pred EEEeccC
Q 004968 364 VVTEENR 370 (721)
Q Consensus 364 v~T~kg~ 370 (721)
|++.+..
T Consensus 556 V~i~~~~ 562 (616)
T PRK07418 556 VHVRRDE 562 (616)
T ss_pred EEecCcc
Confidence 9997543
No 97
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.45 E-value=6.5e-13 Score=154.84 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=96.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g 466 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSV-------------LG 466 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cc
Confidence 4589999999999999984 589999999999997 8999999999999999999999985 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+. ..+.. + .. ...+. ++-.++...++++||+++..+ ++.++|.++++
T Consensus 467 ~i~-~~~~~---------~----~~-~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (574)
T PRK09124 467 FVA-MEMKA---------G----GY-LTDGT--------------DLHNPDFAAIAEACGITGIRV---EKASELDGALQ 514 (574)
T ss_pred cHH-HHHHh---------c----CC-ccccC--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 221 00000 0 00 00000 111235567899999999866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 515 RAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHh--CCCCEEEEEEecCcc
Confidence 9987 589999999996543
No 98
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.44 E-value=1.3e-13 Score=133.18 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=91.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++| .++++||+++|||++. +...+|.+|.++++|+++||.||+.. +
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~-------------~ 86 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGY-------------G 86 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBS-------------H
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcc-------------e
Confidence 568999999999999998 4589999999999996 77899999999999999999999862 3
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.... .+....... .....+ +..-.++...+++++|+++. .++..|+++|.++++
T Consensus 87 ~~~~-~~~~~~~~~----------~~~~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~al~ 140 (153)
T PF02775_consen 87 MTGG-QQTPFGGGR----------FSGVDG--------------KTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEALR 140 (153)
T ss_dssp HHHH-HHHHTTSTC----------HHSTBT--------------TTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHHHH
T ss_pred Eecc-ccccCcCcc----------cccccc--------------cccccCCHHHHHHHcCCcEE-EEccCCHHHHHHHHH
Confidence 2211 100000000 000000 00112345678899999987 455556699999999
Q ss_pred HHHhcCCCCCEEEEE
Q 004968 350 EVASLGSMGPVLVHV 364 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v 364 (721)
++.+ .++|+||||
T Consensus 141 ~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 141 EALE--SGGPAVIEV 153 (153)
T ss_dssp HHHH--SSSEEEEEE
T ss_pred HHHh--CCCcEEEEc
Confidence 9997 689999997
No 99
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.44 E-value=8.7e-13 Score=154.35 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=115.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|+| |+.|.+..+.-.. .+++. ...+.|++|+++|+|+|
T Consensus 366 l~p~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~-----~~~~~-------------~s~~~g~mG~glpaaiG 426 (597)
T PRK08273 366 VNPQRVFWELSPRLP-DNAILTADSGSCANWYARDLRMRR-----GMMAS-------------LSGTLATMGPAVPYAIA 426 (597)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhCCCCC-----CCeEE-------------ecCccccccchHHHHHH
Confidence 444445444543332 3455668999 6667663332110 00110 01134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhc-----CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhh
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYL-----DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~-----~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (721)
+++|. ++++|||++|||+|+ |+ .++|.+|.++ ++|+++||.||+. +|.+.. .++
T Consensus 427 a~la~----p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~-------------~~~i~~-~q~ 486 (597)
T PRK08273 427 AKFAH----PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRD-------------LNQVTW-EQR 486 (597)
T ss_pred HHHhC----CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCc-------------chHHHH-HHH
Confidence 99985 589999999999996 88 6999999999 8999999999985 333311 111
Q ss_pred hhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
.... .... ....++-.++...++++||+.+..+ .+.++|.++|+++.+ .+
T Consensus 487 ~~~~------------------~~~~-------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~ 536 (597)
T PRK08273 487 VMEG------------------DPKF-------EASQDLPDVPYARFAELLGLKGIRV---DDPEQLGAAWDEALA--AD 536 (597)
T ss_pred HhcC------------------CCcc-------cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CC
Confidence 0000 0000 0000001134567889999999866 789999999999987 58
Q ss_pred CCEEEEEEEecc
Q 004968 358 GPVLVHVVTEEN 369 (721)
Q Consensus 358 ~P~lI~v~T~kg 369 (721)
+|+||+|.+.+.
T Consensus 537 ~p~lIeV~~~~~ 548 (597)
T PRK08273 537 RPVVLEVKTDPN 548 (597)
T ss_pred CCEEEEEEeCCC
Confidence 999999999654
No 100
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.44 E-value=6.5e-13 Score=155.24 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=115.7
Q ss_pred HHHHHHHHhcccCCCCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 127 AVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 127 ~vel~~aL~~vf~~p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
.-.+...|...++ ++|. ++.|.| |+.|+..++.-++. +++- ...+.|++|+++|+|+|+
T Consensus 382 ~~~~~~~l~~~l~-~~d~iv~~d~G~~~~~~~~~~~~~~p-----~~~~-------------~~~~~gsmG~glpaaiGa 442 (595)
T PRK09107 382 PQYAIQRLYELTK-GRDTYITTEVGQHQMWAAQFFGFEEP-----NRWM-------------TSGGLGTMGYGLPAALGV 442 (595)
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCcHHHHHHHHhcccCCC-----CeEE-------------cCCCchhhhhhHHHHHHH
Confidence 3344444544443 4565 467888 66677644432111 1111 112448999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+.. +
T Consensus 443 ~lA~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~-------------y~~i~~----------~ 493 (595)
T PRK09107 443 QIAH----PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQY-------------MGMVRQ----------W 493 (595)
T ss_pred HHhC----CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH----------H
Confidence 9984 589999999999997 8999999999999999999999986 343311 1
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
++.. ......... ..-.++...++++||+++.++ .+.++|.++|+++.+ .++|+||+|
T Consensus 494 q~~~-~~~~~~~~~----------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lIeV 551 (595)
T PRK09107 494 QQLL-HGNRLSHSY----------------TEAMPDFVKLAEAYGAVGIRC---EKPGDLDDAIQEMID--VDKPVIFDC 551 (595)
T ss_pred HHHH-hCCcccccc----------------CCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 1000 000000000 000134567899999998866 789999999999987 589999999
Q ss_pred EEec
Q 004968 365 VTEE 368 (721)
Q Consensus 365 ~T~k 368 (721)
.+..
T Consensus 552 ~i~~ 555 (595)
T PRK09107 552 RVAN 555 (595)
T ss_pred EecC
Confidence 9964
No 101
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.44 E-value=7.6e-13 Score=154.16 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=116.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCc-hHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|.|. +.|....+.-++. ++|- ..-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l-~~d~ivv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~glpaaiG 432 (572)
T PRK08979 372 IKPQQVIETLYKLT-NGDAYVASDVGQHQMFAALYYPFDKP-----RRWI-------------NSGGLGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHhcCcCCC-----CeEE-------------ccCCcccccchhhHHHh
Confidence 44445555555543 245567789994 4565533321110 1111 00134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~-------------y~~i~~---------- 483 (572)
T PRK08979 433 VKFAM----PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRF-------------LGMVKQ---------- 483 (572)
T ss_pred hhhhC----CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCc-------------cHHHHH----------
Confidence 99984 589999999999997 8999999999999999999999986 343311
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+++.....+ ..+. .. ..++...++|+||.++.++ .+.++|.++|+++.+. .++|+||
T Consensus 484 ~q~~~~~~~----~~~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~lI 541 (572)
T PRK08979 484 WQDMIYQGR----HSHS--------------YMDSVPDFAKIAEAYGHVGIRI---SDPDELESGLEKALAM-KDRLVFV 541 (572)
T ss_pred HHHHHhCCc----cccc--------------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEE
Confidence 111000000 0000 00 0134567899999998866 7899999999998762 3889999
Q ss_pred EEEEec
Q 004968 363 HVVTEE 368 (721)
Q Consensus 363 ~v~T~k 368 (721)
+|.+.+
T Consensus 542 ev~i~~ 547 (572)
T PRK08979 542 DINVDE 547 (572)
T ss_pred EEEeCC
Confidence 999964
No 102
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.44 E-value=6.3e-13 Score=133.44 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|+++|+|+|+++|. ++++||+++|||++. .|..++|.+|.++++|+++||.||+..+...+++......+..
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~ 125 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFK 125 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCc
Confidence 78999999999999884 689999999999942 3778999999999999999999998643211111100000000
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
. . ....+.. ...++...+++++|+.++..+.-.+.++|.++|+++
T Consensus 126 ~---------------~------~~~~~~~--------------~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a 170 (193)
T cd03375 126 T---------------K------TTPYGNI--------------EEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKA 170 (193)
T ss_pred c---------------c------CCCCCCC--------------CCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHH
Confidence 0 0 0000000 001234567889999885333347899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|++|++.+.
T Consensus 171 l~--~~gp~vIev~~~ 184 (193)
T cd03375 171 IQ--HKGFSFVEVLSP 184 (193)
T ss_pred Hh--cCCCEEEEEECC
Confidence 87 589999999874
No 103
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.44 E-value=9.2e-13 Score=153.49 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=115.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|.| |+.|.+.++.-+. .+++- ...+.|++|+++|+|+|
T Consensus 359 i~~~~~~~~l~~~l-~~d~ii~~D~g~~~~~~~~~~~~~~-----~~~~~-------------~~~~~gsmG~glpaAiG 419 (575)
T TIGR02720 359 LQAYQVYRAINKIA-EDDAIYSIDVGDININSNRHLKMTP-----KNKWI-------------TSNLFATMGVGVPGAIA 419 (575)
T ss_pred cCHHHHHHHHHHhC-CCCcEEEeCCcHHHHHHHHhCCcCC-----CCeEE-------------cCCCcchhhchHHHHHH
Confidence 34344444443333 34566778998 6667664332110 01110 11234899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|..+++|+++||.||+. +|.+...
T Consensus 420 a~la~----p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~-------------yg~i~~~--------- 471 (575)
T TIGR02720 420 AKLNY----PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCT-------------YGFIKDE--------- 471 (575)
T ss_pred HHHhC----CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHHH---------
Confidence 99884 589999999999997 8999999999999999999888885 3433110
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (721)
++..+. ...+. ++-.++...++++||+++..+ .+.++|.++++++. + .++|+|
T Consensus 472 -~~~~~~-----~~~~~--------------~~~~~df~~iA~a~G~~~~~v---~~~~el~~al~~a~~~~--~~~p~l 526 (575)
T TIGR02720 472 -QEDTNQ-----PLIGV--------------DFNDADFAKIAEGVGAVGFRV---NKIEQLPAVFEQAKAIK--QGKPVL 526 (575)
T ss_pred -HHHhCC-----Ccccc--------------cCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHHHHHHhhC--CCCcEE
Confidence 000000 00000 011245567899999998855 78899999999987 5 589999
Q ss_pred EEEEEecc
Q 004968 362 VHVVTEEN 369 (721)
Q Consensus 362 I~v~T~kg 369 (721)
|+|++.+.
T Consensus 527 iev~i~~~ 534 (575)
T TIGR02720 527 IDAKITGD 534 (575)
T ss_pred EEEEeCCC
Confidence 99999663
No 104
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.43 E-value=3e-12 Score=139.88 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=113.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+.-.+.+.++...+ .++|.||.|+|-.+.- +..+|. ....+++. +++..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~e----------l~~~~~-~~~~~~~~------~f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSRE----------LYELRD-RIGQGHAR------DFLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcHH----------HHHhhc-ccccCCCC------ceEeechhhhHHHHHHHH
Confidence 44444444443333 3678889999953311 112221 11334432 234569999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
|+|. ++++|||+.|||++. |..++|.+++.++ .|+++||.||+..+. +|....
T Consensus 234 ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~----------~g~q~~---------- 287 (361)
T TIGR03297 234 ALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS----------VGGQPT---------- 287 (361)
T ss_pred HHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc----------cCCcCC----------
Confidence 9985 489999999999996 8889999999998 599999999986210 110000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-EEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
.+ ...+...+++++||. .+. .++.++|.++++++++ .++|++|
T Consensus 288 --------------~~-----------------~~~d~~~iA~a~G~~~~~~---v~~~~eL~~al~~a~~--~~gp~lI 331 (361)
T TIGR03297 288 --------------VS-----------------QHLDFAQIAKACGYAKVYE---VSTLEELETALTAASS--ANGPRLI 331 (361)
T ss_pred --------------CC-----------------CCCCHHHHHHHCCCceEEE---eCCHHHHHHHHHHHHh--CCCcEEE
Confidence 00 012235578889974 333 3899999999999987 5889999
Q ss_pred EEEEeccCC
Q 004968 363 HVVTEENRR 371 (721)
Q Consensus 363 ~v~T~kg~G 371 (721)
++++.+|.+
T Consensus 332 eV~v~~g~~ 340 (361)
T TIGR03297 332 EVKVRPGSR 340 (361)
T ss_pred EEEecCCCc
Confidence 999988764
No 105
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.43 E-value=6.5e-13 Score=154.82 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=96.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|+++++|+++||.||+. +|
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~-------------~g 466 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNST-------------LG 466 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------cc
Confidence 3589999999999999985 589999999999997 7888999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .+... + . ...+ .+.-.++...++++||+++..+ ++.++|.++++
T Consensus 467 ~i~~-~q~~~----~---------~-~~~~--------------~~~~~~df~~lA~a~G~~~~~v---~~~~el~~al~ 514 (578)
T PRK06546 467 MVKL-EMLVD----G---------L-PDFG--------------TDHPPVDYAAIAAALGIHAVRV---EDPKDVRGALR 514 (578)
T ss_pred cHHH-HHHhc----C---------C-Cccc--------------ccCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHH
Confidence 2210 00000 0 0 0000 0011234567889999998755 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 515 EAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHh--CCCCEEEEEEeCCCc
Confidence 9987 589999999997543
No 106
>PRK12474 hypothetical protein; Provisional
Probab=99.43 E-value=9.6e-13 Score=151.54 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=113.7
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|..+++ +++.|+.|.| |+.|....+.-+.. ++ | ....+ |++|+++|+|+|
T Consensus 341 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~~p-----~~------~-------~~~~~-gsmG~glpaAiG 400 (518)
T PRK12474 341 LNSLGVAQLIAHRTP-DQAIYADEALTSGLFFDMSYDRARP-----HT------H-------LPLTG-GSIGQGLPLAAG 400 (518)
T ss_pred cCHHHHHHHHHHHCC-CCeEEEECCCcCHHHHHHhhcccCC-----CC------E-------EccCC-CccCccHHHHHH
Confidence 333444455544443 4556678888 66666544331110 00 1 00113 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+....+.....
T Consensus 401 a~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~-------------y~~i~~~~~~~~~~-- 459 (518)
T PRK12474 401 AAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRS-------------YAILNGELQRVGAQ-- 459 (518)
T ss_pred HHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCc-------------chHHHHHHHhhcCC--
Confidence 99995 589999999999997 9999999999999999999999985 34331100000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc--CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
.. +... ..+ .+.. .++...++++||+++.++ .+.++|.++++++.+ .++|++
T Consensus 460 ----------~~---~~~~-------~~~-~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 460 ----------GA---GRNA-------LSM-LDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred ----------CC---Cccc-------ccc-ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 00 0000 000 0001 124567899999998866 789999999999987 589999
Q ss_pred EEEEE
Q 004968 362 VHVVT 366 (721)
Q Consensus 362 I~v~T 366 (721)
|+|.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99874
No 107
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.43 E-value=1.4e-12 Score=152.24 Aligned_cols=175 Identities=13% Similarity=0.213 Sum_probs=114.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-+.. + ..| +...+.|++|+++|+|+|
T Consensus 387 i~~~~v~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~~-----~-----~~~-------~~~~g~gsmG~~l~~aiG 448 (578)
T PRK06112 387 IRPERIMAELQAVLT-GDTIVVADASYSSIWVANFLTARRA-----G-----MRF-------LTPRGLAGLGWGVPMAIG 448 (578)
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcccHHHHHHHHhcCccCC-----C-----ceE-------ECCCCccccccHHHHHHH
Confidence 333444444544433 4567778988 66666533321100 0 000 111245889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++| .++++|||++|||+|+ |++++|++|+++++|+++||.||+.. |.+. ..++..
T Consensus 449 a~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~-------------g~~~-~~~~~~---- 504 (578)
T PRK06112 449 AKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGIL-------------GFQK-HAETVK---- 504 (578)
T ss_pred HHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCcc-------------CCEE-eccccc----
Confidence 9887 4588999999999996 99999999999999999999999852 1110 000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|.. . ..+ .+.-.++...++++||+++..+ ++.++|.++|+++.+ .++|++||
T Consensus 505 ~~~--------~-~~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 556 (578)
T PRK06112 505 FGT--------H-TDA--------------CHFAAVDHAAIARACGCDGVRV---EDPAELAQALAAAMA--APGPTLIE 556 (578)
T ss_pred cCC--------c-ccc--------------CcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0 000 0000123456889999998855 689999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|++.+.
T Consensus 557 v~~~~~ 562 (578)
T PRK06112 557 VITDPS 562 (578)
T ss_pred EEcCcc
Confidence 999653
No 108
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.43 E-value=9.8e-13 Score=153.81 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=116.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |+.|+..++.-+ ..+++. ..-+.|++|+++|+|+|
T Consensus 370 l~~~~~~~~l~~~l~-~d~ivv~d~g~~~~~~~~~~~~~-----~p~~~~-------------~~~~~G~mG~glpaAiG 430 (591)
T PRK11269 370 IKPQRVYEEMNKAFG-RDTCYVSTIGLSQIAAAQFLHVY-----KPRHWI-------------NCGQAGPLGWTIPAALG 430 (591)
T ss_pred cCHHHHHHHHHHhcC-CCcEEEECCcHHHHHHHHhcccC-----CCCcEE-------------eCCccccccchhhhHHh
Confidence 444455555544443 4566778888 444655333211 001110 00135899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. ++..
T Consensus 431 a~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g~i~~-~~~~----- 485 (591)
T PRK11269 431 VRAAD----PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAY-------------LGLIRQ-AQRA----- 485 (591)
T ss_pred hhhhC----CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCc-------------hhHHHH-HHHH-----
Confidence 99984 588999999999997 8899999999999999999999985 343311 1100
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
|..-+..... ...+..+ -...-.+++..++++||.++..+ ++.++|.++|+++.+. +.++|+|
T Consensus 486 ~~~~~~~~~~-~~~~~~~-----------~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~~~~~~~gp~l 550 (591)
T PRK11269 486 FDMDYCVQLA-FENINSP-----------ELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPALEQAKALMAEFRVPVV 550 (591)
T ss_pred hccCccceee-ccccccc-----------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 0000000000 0000000 00001135567899999998876 8999999999998741 1478999
Q ss_pred EEEEEecc
Q 004968 362 VHVVTEEN 369 (721)
Q Consensus 362 I~v~T~kg 369 (721)
|+|.+.+.
T Consensus 551 ieV~v~~~ 558 (591)
T PRK11269 551 VEVILERV 558 (591)
T ss_pred EEEEeccc
Confidence 99999643
No 109
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.43 E-value=1e-12 Score=152.74 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=115.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.++.|.| |..|...++.-+ ..++|- ..-+.|++|+++|+|+|
T Consensus 365 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~-----~~~~~~-------------~~~~~g~mG~~l~~aiG 425 (563)
T PRK08527 365 LKPQWVIERVGELLG-DDAIISTDVGQHQMWVAQFYPFN-----YPRQLA-------------TSGGLGTMGYGLPAALG 425 (563)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccC-----CCCeEE-------------cCCCcccccchHHHHHH
Confidence 333445555544443 3445667998 655655333211 011111 11244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .++......
T Consensus 426 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------~~~i~~-~~~~~~~~~ 485 (563)
T PRK08527 426 AKLAV----PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNF-------------LGMVRQ-WQTFFYEER 485 (563)
T ss_pred HHHhC----CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCc-------------chhHHH-HHHhhcCCc
Confidence 99984 478999999999997 8888999999999999999999986 232211 100000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| .+. +. ..++...+++++|+++... ++.++|.++|+++.+ .++|+||
T Consensus 486 ~-------------~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 533 (563)
T PRK08527 486 Y-------------SET--------------DLSTQPDFVKLAESFGGIGFRV---TTKEEFDKALKEALE--SDKVALI 533 (563)
T ss_pred e-------------eec--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 000 00 0134466889999998866 789999999999987 5899999
Q ss_pred EEEEeccC
Q 004968 363 HVVTEENR 370 (721)
Q Consensus 363 ~v~T~kg~ 370 (721)
||.+.+..
T Consensus 534 eV~v~~~~ 541 (563)
T PRK08527 534 DVKIDRFE 541 (563)
T ss_pred EEEECCcc
Confidence 99997643
No 110
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.43 E-value=1.5e-12 Score=151.81 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=117.2
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|..++. +++.++.|+| |+.|+..++.-... +++ +...+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~p-----~~~-------------~~~~~~g~mG~glpaAiG 432 (572)
T PRK06456 372 LKPWKIMKTIRQALP-RDAIVTTGVGQHQMWAEVFWEVLEP-----RTF-------------LTSSGMGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhCC-CCEEEEECCcHHHHHHHHhcCcCCC-----CcE-------------EcCCCcccccchhHHHHH
Confidence 334445555544443 4566778998 55566533321110 011 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. +++. .
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~-------------yg~i~~-~q~~----~ 488 (572)
T PRK06456 433 AKLAR----PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRT-------------LGLVRQ-VQDL----F 488 (572)
T ss_pred HHHhC----CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCc-------------hHHHHH-HHHH----h
Confidence 99984 588999999999997 8889999999999999999999985 343311 1000 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
|. .... + .++ ..++...++++||.++..+ ++.++|.++|+++.+ .++|+||
T Consensus 489 ~~------~~~~---~--------------~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 540 (572)
T PRK06456 489 FG------KRIV---G--------------VDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKSLKSAIK--EDIPAVI 540 (572)
T ss_pred hC------CCcc---c--------------ccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00 0000 0 001 0135567899999998866 889999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
+|.+.+.
T Consensus 541 ev~v~~~ 547 (572)
T PRK06456 541 RVPVDKE 547 (572)
T ss_pred EEEeCcc
Confidence 9999753
No 111
>PRK08322 acetolactate synthase; Reviewed
Probab=99.42 E-value=2e-12 Score=149.97 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=116.2
Q ss_pred cHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 126 AAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 126 g~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
....+...|...++ +++.++.|.| |+.|....+.-... ++ .+...+.|.+|+++|+|+|+
T Consensus 358 ~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~~~-----~~-------------~~~~~~~g~mG~~lpaaiGa 418 (547)
T PRK08322 358 KPQRIVADLRKVMP-DDDIVILDNGAYKIWFARNYRAYEP-----NT-------------CLLDNALATMGAGLPSAIAA 418 (547)
T ss_pred CHHHHHHHHHHHCC-CCeEEEECCcHHHHHHHHhcccCCC-----CC-------------EEcCCCcccccchhHHHHHH
Confidence 33344444544443 4677778999 54555433321100 01 11112558999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++.. |
T Consensus 419 ~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~-------------~g~~~~-~~~~~----~ 474 (547)
T PRK08322 419 KLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNA-------------YGMIRW-KQENM----G 474 (547)
T ss_pred HHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------cchHHH-HHHhh----c
Confidence 9984 589999999999997 8889999999999999999999985 232211 00000 0
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. ...+ -++-.++...++++||+++..+ .+.++|.++++++.+ .++|+||||
T Consensus 475 ~----------~~~~--------------~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIev 525 (547)
T PRK08322 475 F----------EDFG--------------LDFGNPDFVKYAESYGAKGYRV---ESADDLLPTLEEALA--QPGVHVIDC 525 (547)
T ss_pred C----------Cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 0 0000 0111245577899999999866 789999999999987 589999999
Q ss_pred EEeccC
Q 004968 365 VTEENR 370 (721)
Q Consensus 365 ~T~kg~ 370 (721)
.+....
T Consensus 526 ~v~~~~ 531 (547)
T PRK08322 526 PVDYSE 531 (547)
T ss_pred EecCcc
Confidence 996543
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.42 E-value=1.2e-12 Score=151.76 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=118.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-++. +.+- ...+.|++|+++|+|+|
T Consensus 352 ~~~~~~~~~l~~~~~-~~~iiv~d~g~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~glpaAiG 412 (548)
T PRK08978 352 IYAPALLKQLSDRKP-ADTVVTTDVGQHQMWVAQHMRFTRP-----ENFI-------------TSSGLGTMGFGLPAAIG 412 (548)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEecCcHHHHHHHHhcccCCC-----CeEE-------------eCCchhhhhchHHHHHH
Confidence 444455555655443 4567778999 55555433321111 1111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+.. .++..
T Consensus 413 a~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~-------------~~~~~~-~~~~~---- 468 (548)
T PRK08978 413 AQVAR----PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQR-------------LGMVRQ-WQQLF---- 468 (548)
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH-HHHHH----
Confidence 99984 589999999999997 8889999999999999999999985 333311 11000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
|. . ...+. ++ -.++...++++||+++..+ .+.++|.++|+++.+ .++|.||
T Consensus 469 ~~-----~----~~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 520 (548)
T PRK08978 469 FD-----E----RYSET--------------DLSDNPDFVMLASAFGIPGQTI---TRKDQVEAALDTLLN--SEGPYLL 520 (548)
T ss_pred hC-----C----cceec--------------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00 0 00000 00 0134567899999999866 789999999999987 5899999
Q ss_pred EEEEeccC
Q 004968 363 HVVTEENR 370 (721)
Q Consensus 363 ~v~T~kg~ 370 (721)
||.+.+..
T Consensus 521 eV~id~~~ 528 (548)
T PRK08978 521 HVSIDELE 528 (548)
T ss_pred EEEecCcc
Confidence 99997543
No 113
>PLN02470 acetolactate synthase
Probab=99.42 E-value=1.3e-12 Score=152.59 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=96.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~-------------yg 484 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQH-------------LG 484 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 4489999999999999984 588999999999996 8999999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++............+.+.. .....++...++++||+++..+ ++.++|.++|+
T Consensus 485 ~i~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al~ 541 (585)
T PLN02470 485 MVVQ----------WEDRFYKANRAHTYLGDPDA----------EAEIFPDFLKFAEGCKIPAARV---TRKSDLREAIQ 541 (585)
T ss_pred HHHH----------HHHHHhCCceeeeecCcccc----------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 3311 11000000000000000000 0000134567899999998866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|+||||.+.+..
T Consensus 542 ~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 542 KMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999996533
No 114
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.42 E-value=1.4e-12 Score=151.66 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=115.6
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|..+++ +++.|+.|.| |..|+...+.-+. .+. | ...-+.|++|+++|+|+|
T Consensus 373 l~~~~~~~~l~~~l~-~d~iiv~d~g~~~~~~~~~~~~~~-----p~~------~-------~~~~~~gsmG~~lp~aiG 433 (570)
T PRK06725 373 LKPQHVINLVSELTN-GEAIVTTEVGQHQMWAAHFYKAKN-----PRT------F-------LTSGGLGTMGFGFPAAIG 433 (570)
T ss_pred cCHHHHHHHHHhhCC-CCcEEEeCCcHHHHHHHHhccccC-----CCe------E-------EccCCcccccchhhHHHh
Confidence 444455555544433 4566778988 5555553332100 000 1 111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+.. +.+.. .++......
T Consensus 434 a~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~-------------~~~~~-~q~~~~~~~ 493 (570)
T PRK06725 434 AQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFL-------------GMVRQ-WQEMFYENR 493 (570)
T ss_pred hHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------HHHHH-HHHHhcCCc
Confidence 99984 589999999999996 88899999999999999999999862 32211 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+ .+.-.++...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 494 ~-------------~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 541 (570)
T PRK06725 494 L-------------SE--------------SKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVMLEAFA--HEGPVVVD 541 (570)
T ss_pred c-------------cc--------------CcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00 0001234567889999998865 789999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
+.+...
T Consensus 542 v~id~~ 547 (570)
T PRK06725 542 FCVEEG 547 (570)
T ss_pred EEeCCc
Confidence 999653
No 115
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.41 E-value=1.5e-12 Score=151.90 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=95.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |+.++|++|.++++|+++||.||+. ++
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~-------------~~ 479 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRF-------------LG 479 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECch-------------hH
Confidence 4588999999999999985 488999999999996 8889999999999999999999986 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc--cCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
.+.. .++.... +.. .... -.++...++++||+++..+ ++.++|.++
T Consensus 480 ~i~~-~q~~~~~-----------------~~~-----------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 480 MVKQ-WQDLIYS-----------------GRH-----------SQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred HHHH-HHHHhcC-----------------Ccc-----------cccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 3211 0000000 000 0000 0123466889999998866 789999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccC
Q 004968 348 LQEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
|+++.+. .++|+||||.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9999873 378999999997533
No 116
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.41 E-value=9.4e-13 Score=153.62 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=116.7
Q ss_pred HHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHH
Q 004968 127 AVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMA 205 (721)
Q Consensus 127 ~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~A 205 (721)
...+...|...+. +++.|+.|+| |+.|.+.++.-. ..+++- ...+.|++|+++|+|+|++
T Consensus 383 ~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~g~mG~~lpaaiGa~ 443 (579)
T TIGR03457 383 PRQVLRELEKAMP-EDAIVSTDIGNINSVANSYLRFE-----KPRKFL-------------APMSFGNCGYAFPTIIGAK 443 (579)
T ss_pred HHHHHHHHHHhCC-CCeEEEECCchhHHHHHHhcCcC-----CCCeEE-------------cCCccccccchHHHHHhhh
Confidence 3344444433332 4566778998 666766444311 111111 1113489999999999999
Q ss_pred HHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHH
Q 004968 206 VARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFR 285 (721)
Q Consensus 206 lA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~ 285 (721)
+|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .+. ..|.
T Consensus 444 la~----p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~-------------yg~i~~-~~~----~~~~ 499 (579)
T TIGR03457 444 IAA----PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQ-------------WGAEKK-NQV----DFYN 499 (579)
T ss_pred hhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcc-------------hHHHHH-HHH----HhhC
Confidence 984 589999999999997 8889999999999999999999986 343311 000 0000
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHhhcccC-CCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEEEE
Q 004968 286 QLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG-PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVLVH 363 (721)
Q Consensus 286 ~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~lI~ 363 (721)
. ...+. ++-. ++...++|+||.++..+ ++.++|.++|+++.+. ..++|+||+
T Consensus 500 ~---------~~~~~--------------~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 500 N---------RFVGT--------------ELESELSFAGIADAMGAKGVVV---DKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred C---------cceec--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 0 00000 0101 25567899999998866 8899999999998652 137899999
Q ss_pred EEEeccCC
Q 004968 364 VVTEENRR 371 (721)
Q Consensus 364 v~T~kg~G 371 (721)
|.+.+..+
T Consensus 554 V~v~~~~~ 561 (579)
T TIGR03457 554 IVCTRELG 561 (579)
T ss_pred EEeCCCcC
Confidence 99977554
No 117
>PRK07586 hypothetical protein; Validated
Probab=99.41 E-value=1.4e-12 Score=150.12 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |+.|...++.-.. |. +.+...+ |++|+++|+|+|
T Consensus 337 i~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lpaaiG 396 (514)
T PRK07586 337 LTPEAIAQVIAALLP-ENAIVVDESITSGRGFFPATAGAA---------------PH---DWLTLTG-GAIGQGLPLATG 396 (514)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCcCHHHHHHhccccC---------------CC---CEEccCC-cccccHHHHHHH
Confidence 344445555544443 4566778988 5555553322100 10 0111123 889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|+ ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .+
T Consensus 397 a~lA~----p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~-------------y~~~~~-~~------- 449 (514)
T PRK07586 397 AAVAC----PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRA-------------YAILRG-EL------- 449 (514)
T ss_pred HHHhC----CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCch-------------hHHHHH-HH-------
Confidence 99995 589999999999996 9999999999999999999988885 343311 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc--cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
+.. .. ...+... ..+. +. -.++...++++||+++..+ ++.++|.++++++.+ .++|+|
T Consensus 450 --~~~--~~---~~~~~~~-------~~~~-~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al~~a~~--~~~p~l 509 (514)
T PRK07586 450 --ARV--GA---GNPGPRA-------LDML-DLDDPDLDWVALAEGMGVPARRV---TTAEEFADALAAALA--EPGPHL 509 (514)
T ss_pred --HHh--cC---CCCCccc-------cccc-cCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 000 00 0000000 0000 00 0135567899999998866 789999999999987 589999
Q ss_pred EEEEE
Q 004968 362 VHVVT 366 (721)
Q Consensus 362 I~v~T 366 (721)
|+|.+
T Consensus 510 iev~~ 514 (514)
T PRK07586 510 IEAVV 514 (514)
T ss_pred EEEEC
Confidence 99863
No 118
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.40 E-value=2e-12 Score=150.52 Aligned_cols=174 Identities=19% Similarity=0.205 Sum_probs=114.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.|+.|+| |+.|....+.-+. .+++ ....+.|++|+++|+|+|
T Consensus 370 l~~~~v~~~l~~~l~-~~~iv~~D~G~~~~~~~~~~~~~~-----~~~~-------------~~~~~~g~mG~~lpaaiG 430 (564)
T PRK08155 370 LSHYGLINAVAACVD-DNAIITTDVGQHQMWTAQAYPLNR-----PRQW-------------LTSGGLGTMGFGLPAAIG 430 (564)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECCchHHHHHHHhccccC-----CCeE-------------EeCCCcccccchhHHHHH
Confidence 444445555544443 4556778999 6666543322110 0111 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+.. .++..
T Consensus 431 a~la~----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~-------------~g~~~~-~q~~~---- 486 (564)
T PRK08155 431 AALAN----PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEA-------------LGLVHQ-QQSLF---- 486 (564)
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------ccccHH-HHHHh----
Confidence 99985 588999999999997 7788899999999999999999985 222210 00000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| ..... +. .+ -.++...++++||++++.+ .+.++|.++++++.+ .++|++|
T Consensus 487 ~------~~~~~---~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 538 (564)
T PRK08155 487 Y------GQRVF---AA--------------TYPGKINFMQIAAGFGLETCDL---NNEADPQAALQEAIN--RPGPALI 538 (564)
T ss_pred c------CCCee---ec--------------cCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00000 00 00 0134466889999998866 689999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
+|.+...
T Consensus 539 eV~~~~~ 545 (564)
T PRK08155 539 HVRIDAE 545 (564)
T ss_pred EEEeCCC
Confidence 9999643
No 119
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.40 E-value=1.8e-12 Score=152.13 Aligned_cols=180 Identities=16% Similarity=0.213 Sum_probs=118.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|...++ +++.++.|.| |+.|...++.-.. .+ .| +...+.|++|+++|+|+|
T Consensus 398 l~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~-----p~------~~-------~~~~~~G~mG~glpaaiG 458 (612)
T PRK07789 398 LAPQYVIERLGEIAG-PDAIYVAGVGQHQMWAAQFIDYEK-----PR------TW-------LNSGGLGTMGYAVPAAMG 458 (612)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccCC-----CC------eE-------EcCCCcccccchhhhHHh
Confidence 444455555544432 4566778998 6556654433110 00 11 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|+++++|+++||.||+. +|.+.. .++......
T Consensus 459 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~i~~-~q~~~~~~~ 518 (612)
T PRK07789 459 AKVGR----PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGN-------------LGMVRQ-WQTLFYEER 518 (612)
T ss_pred hhccC----CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------hHHHHH-HHHHhhCCC
Confidence 99984 589999999999996 9999999999999999999999986 343311 110000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+..... .....++...++++||+++..+ ++.++|.++|+++.+. .++|+||+
T Consensus 519 ~-------------~~~~~~~---------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~-~~~p~lIe 572 (612)
T PRK07789 519 Y-------------SNTDLHT---------HSHRIPDFVKLAEAYGCVGLRC---EREEDVDAVIEKARAI-NDRPVVID 572 (612)
T ss_pred c-------------ceeecCc---------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 0 0000000 0000134567899999999866 8899999999999873 27899999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|.+.+.
T Consensus 573 v~i~~~ 578 (612)
T PRK07789 573 FVVGKD 578 (612)
T ss_pred EEECCc
Confidence 999653
No 120
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.40 E-value=2.1e-12 Score=150.57 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=116.2
Q ss_pred ccHHHHHHHHhcccCCCCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
+....+...|...+ |+|. |+.|.| |..|...++.-++. ++|. ..-+.|++|+++|+|+
T Consensus 374 l~~~~~~~~l~~~l--~~~~iv~~d~g~~~~~~~~~~~~~~p-----~~~~-------------~~~~~gsmG~glpaAi 433 (574)
T PRK06466 374 IKPQQVVETLYEVT--NGDAYVTSDVGQHQMFAAQYYKFNKP-----NRWI-------------NSGGLGTMGFGLPAAM 433 (574)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEECCcHHHHHHHHhccccCC-----CcEE-------------cCCCcchhhchHHHHH
Confidence 44445555554433 4454 557888 66676644331110 1111 1114489999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 434 Ga~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~-------------y~~i~~--------- 485 (574)
T PRK06466 434 GVKLAF----PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGA-------------LGMVRQ--------- 485 (574)
T ss_pred HHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH---------
Confidence 999985 589999999999997 8999999999999999999999985 343311
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
+++.... +... ...+ -.++...++++||.++..+ .+.++|.++|+++.+. .++|+|
T Consensus 486 -~q~~~~~--------~~~~----------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~-~~~p~l 542 (574)
T PRK06466 486 -WQDMQYE--------GRHS----------HSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKPKLEEAFAM-KDRLVF 542 (574)
T ss_pred -HHHHhcC--------Ccee----------ecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEE
Confidence 1100000 0000 0000 0134567889999998866 7899999999998762 278999
Q ss_pred EEEEEeccC
Q 004968 362 VHVVTEENR 370 (721)
Q Consensus 362 I~v~T~kg~ 370 (721)
|+|.+.+..
T Consensus 543 Iev~i~~~~ 551 (574)
T PRK06466 543 IDIYVDRSE 551 (574)
T ss_pred EEEEeCCcc
Confidence 999997543
No 121
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.40 E-value=1.9e-12 Score=151.15 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=115.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|... .|++.++.|.| |+.|...++.-+ |. +.....+.|++|+++|+|+|
T Consensus 383 l~~~~~~~~l~~~--~~d~iv~~d~G~~~~~~~~~~~~~----------------~~---~~~~~~~~g~mG~glpaaiG 441 (585)
T CHL00099 383 LSPQEVINEISQL--APDAYFTTDVGQHQMWAAQFLKCK----------------PR---KWLSSAGLGTMGYGLPAAIG 441 (585)
T ss_pred cCHHHHHHHHHhh--CCCeEEEECCcHHHHHHHHhccCC----------------CC---cEEcCccccchhhhHHHHHH
Confidence 4444454445333 25667778999 555665333210 10 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|+++++|+++||.||+. +|.+.. .++......
T Consensus 442 aala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~-------------y~~i~~-~q~~~~~~~ 501 (585)
T CHL00099 442 AQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKW-------------QGMVRQ-WQQAFYGER 501 (585)
T ss_pred HHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-HHHHhcCCC
Confidence 99985 488999999999997 9999999999999999999999985 333311 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+.. ...-.++...++++||+++..+ ++.++|.++++++.+ .++|.|||
T Consensus 502 ~-------------~~~~------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 551 (585)
T CHL00099 502 Y-------------SHSN------------MEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSLKEALD--YDGPVLID 551 (585)
T ss_pred c-------------cccc------------CCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 0000 0000134466889999998866 789999999999987 58999999
Q ss_pred EEEec
Q 004968 364 VVTEE 368 (721)
Q Consensus 364 v~T~k 368 (721)
|.+..
T Consensus 552 v~v~~ 556 (585)
T CHL00099 552 CQVIE 556 (585)
T ss_pred EEECC
Confidence 99964
No 122
>PRK08617 acetolactate synthase; Reviewed
Probab=99.40 E-value=2.3e-12 Score=149.67 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+. +|
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~~ 472 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGH-------------YN 472 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------cc
Confidence 4588999999999999984 589999999999997 9999999999999999998888885 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .+ ...| ....+. ++-.++...++++||+++..+ ++.++|.++|+
T Consensus 473 ~~~~-~~----~~~~----------~~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 520 (552)
T PRK08617 473 MVEF-QE----EMKY----------GRSSGV--------------DFGPVDFVKYAESFGAKGLRV---TSPDELEPVLR 520 (552)
T ss_pred hHHH-HH----Hhhc----------CCcccC--------------CCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 2210 00 0000 000000 001234567889999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 521 ~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 521 EALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHh--CCCcEEEEEEecccc
Confidence 9986 588999999997543
No 123
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.39 E-value=2.6e-12 Score=149.65 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=95.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+..+|++|..+++|+++||.||+. +|
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~-------------~~ 482 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEA-------------LG 482 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECch-------------HH
Confidence 4489999999999999984 588999999999997 8888999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. +++. .... ...+ ... -.++...++++||+++..+ ++.++|.+++
T Consensus 483 ~i~~----------~~~~-~~~~---~~~~--------------~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al 531 (571)
T PRK07710 483 MVRQ----------WQEE-FYNQ---RYSH--------------SLLSCQPDFVKLAEAYGIKGVRI---DDELEAKEQL 531 (571)
T ss_pred HHHH----------HHHH-HhCC---ccee--------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 3311 0000 0000 0000 000 0134466889999999866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|++|+|.+....
T Consensus 532 ~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 532 QHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99987 589999999997543
No 124
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.39 E-value=2.1e-12 Score=150.16 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=115.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ |++.++.|.| |..|...++.-++. ++| ...-+.|++|+++|+|+|
T Consensus 366 l~~~~~~~~l~~~~--p~~iiv~d~g~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~mG~glpaaiG 425 (561)
T PRK06048 366 IKPQYVIEQIYELC--PDAIIVTEVGQHQMWAAQYFKYKYP-----RTF-------------ITSGGLGTMGYGFPAAIG 425 (561)
T ss_pred cCHHHHHHHHHhhC--CCcEEEEcCcHHHHHHHHhcccCCC-----CeE-------------EeCCCccccccHHHHHHH
Confidence 34445555554433 5677888988 44455433321100 011 111234899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. ++.+.. .++......
T Consensus 426 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~-~~~~~~~~~ 485 (561)
T PRK06048 426 AKVGK----PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGY-------------LGMVRQ-WQELFYDKR 485 (561)
T ss_pred HHHhC----CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------cHHHHH-HHHHHcCCc
Confidence 99984 589999999999997 8999999999999999999999985 333311 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| .+ ... -.++...++|+||+++.++ ++.++|.++|+++.+ .++|+||
T Consensus 486 ~-------------~~--------------~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~al~~a~~--~~~p~li 533 (561)
T PRK06048 486 Y-------------SH--------------TCIKGSVDFVKLAEAYGALGLRV---EKPSEVRPAIEEAVA--SDRPVVI 533 (561)
T ss_pred c-------------cc--------------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00 000 1234567899999998866 789999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
++.+.+.
T Consensus 534 ev~~~~~ 540 (561)
T PRK06048 534 DFIVECE 540 (561)
T ss_pred EEEecCc
Confidence 9999653
No 125
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.39 E-value=3.8e-12 Score=147.93 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=114.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. .++.|+.|.| |+.|.+.++.-+. . .++. ..+.|.+|+++|+|+|
T Consensus 367 ~~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~--------~---~~~~--------~~~~g~mG~glpaaiG 426 (557)
T PRK08199 367 VQLGEVMAWLRERLP-ADAIITNGAGNYATWLHRFFRFRR--------Y---RTQL--------APTSGSMGYGLPAAIA 426 (557)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECChHHHHHHHHhcCcCC--------C---CeEE--------CCCCccccchHHHHHH
Confidence 333444444544332 3455668888 6666664433110 0 0110 0134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |..++|.+|+.+++|+++||.||+. ++.+.... +. .
T Consensus 427 a~la~----p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~-------------~~~~~~~~-~~----~ 482 (557)
T PRK08199 427 AKLLF----PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGM-------------YGTIRMHQ-ER----E 482 (557)
T ss_pred HHHhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------chHHHHHH-HH----h
Confidence 99884 589999999999997 8899999999999999999999985 33331100 00 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|.. ...+. +.-.++...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 483 ~~~---------~~~~~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~li~ 534 (557)
T PRK08199 483 YPG---------RVSGT--------------DLTNPDFAALARAYGGHGETV---ERTEDFAPAFERALA--SGKPALIE 534 (557)
T ss_pred cCC---------ccccc--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 00000 011134567889999998755 689999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|.|.+.
T Consensus 535 v~~~~~ 540 (557)
T PRK08199 535 IRIDPE 540 (557)
T ss_pred EEeCHH
Confidence 999754
No 126
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.39 E-value=2.3e-12 Score=149.82 Aligned_cols=129 Identities=21% Similarity=0.268 Sum_probs=95.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. ++
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~-------------~~ 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRY-------------LG 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 3488999999999999884 588999999999997 7788999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc-CCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI-GPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++......+ .. .... .++...++++||+++..+ ++.++|.+++
T Consensus 471 ~~~~-~q~~~~~~~~---------~~------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 519 (558)
T TIGR00118 471 MVRQ-WQELFYEERY---------SH------------------THMGSLPDFVKLAEAYGIKGIRI---EKPEELDEKL 519 (558)
T ss_pred HHHH-HHHHhcCCce---------ee------------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2211 0000000000 00 0000 134567889999998865 6799999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|+||||.+.+..
T Consensus 520 ~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 520 KEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99987 589999999997543
No 127
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.38 E-value=7.2e-12 Score=145.50 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=93.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. +++||+++|||+|+ |+.++|.+|+++++|+++||.||+.. . .+
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~-~----------~~ 476 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGI-Y----------RG 476 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhh-h----------hh
Confidence 3489999999999999972 78999999999997 99999999999999999999999841 0 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. +...... ...+ .++ -.+++..++++||.++..+ .+.++|.++|
T Consensus 477 -~--------------~~~~~~~---~~~~--------------~~~~~~~df~~la~a~G~~~~~v---~~~~el~~al 521 (554)
T TIGR03254 477 -D--------------DVNVVGA---DPAP--------------TVLVHGARYDKMMKAFGGVGYNV---TTPDELKAAL 521 (554)
T ss_pred -h--------------hhhhcCC---CCCc--------------cccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 0 0000000 0000 000 1234567889999998766 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEecc
Q 004968 349 QEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg 369 (721)
+++.+ .++|+||+|.+.+.
T Consensus 522 ~~a~~--~~~p~lIev~id~~ 540 (554)
T TIGR03254 522 NEALA--SGKPTLINAVIDPS 540 (554)
T ss_pred HHHHh--CCCCEEEEEEECCC
Confidence 99987 58999999999754
No 128
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.37 E-value=9.4e-12 Score=144.98 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=94.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. +++||+++|||+|+ |+.++|.+|.++++|+++||.||+.. ..
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~------------~~ 482 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGI------------YR 482 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhH------------HH
Confidence 4589999999999999982 78899999999997 99999999999999999999999841 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.. ++. + .. .. ...+ -.+ -.+++..++++||+++..+ .+.++|.+++
T Consensus 483 ~~----~~~-----~---~~-~~---~~~~--------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 529 (569)
T PRK09259 483 GD----DVN-----L---SG-AG---DPSP--------------TVLVHHARYDKMMEAFGGVGYNV---TTPDELRHAL 529 (569)
T ss_pred HH----HHH-----h---hc-CC---Cccc--------------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 00 000 0 00 00 0000 001 1245567899999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
+++.+ .++|+||+|.+.+..+
T Consensus 530 ~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 530 TEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHh--CCCCEEEEEEECCCCC
Confidence 99987 5899999999976543
No 129
>PRK07524 hypothetical protein; Provisional
Probab=99.37 E-value=2.1e-12 Score=149.44 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=96.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+|+++++|+++||.||+. +|
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~-------------~g 465 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDG-------------YG 465 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------hH
Confidence 4589999999999999984 689999999999996 8888999999999999999999975 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++... . ...+. +.-.++...++++||+++... .+.++|.++++
T Consensus 466 ~i~~----------~~~~~~----~-~~~~~--------------~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~ 513 (535)
T PRK07524 466 EIRR----------YMVARD----I-EPVGV--------------DPYTPDFIALARAFGCAAERV---ADLEQLQAALR 513 (535)
T ss_pred HHHH----------HHHHhc----C-Ccccc--------------CCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHH
Confidence 3311 000000 0 00000 011234567889999998755 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|||++.+-.
T Consensus 514 ~a~~--~~~p~liev~~~~~~ 532 (535)
T PRK07524 514 AAFA--RPGPTLIEVDQACWF 532 (535)
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 9987 589999999997644
No 130
>PRK07064 hypothetical protein; Provisional
Probab=99.37 E-value=3.8e-12 Score=147.56 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=96.3
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------yg~~ 465 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGG-------------YGVI 465 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCCh-------------hHHH
Confidence 78999999999999984 588999999999997 8899999999999999999999985 3433
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. +++.. | .. ...+ -++-.++...++++||+++..+ .+.++|.++++++
T Consensus 466 ~~-~~~~~----~-----~~----~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a 514 (544)
T PRK07064 466 RN-IQDAQ----Y-----GG----RRYY--------------VELHTPDFALLAASLGLPHWRV---TSADDFEAVLREA 514 (544)
T ss_pred HH-HHHHh----c-----CC----cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHH
Confidence 11 11100 0 00 0000 0111245567899999998866 7899999999999
Q ss_pred HhcCCCCCEEEEEEEeccCCC
Q 004968 352 ASLGSMGPVLVHVVTEENRRA 372 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~kg~G~ 372 (721)
.+ .++|+||+|.+.....+
T Consensus 515 ~~--~~~p~lIeV~~~~~~~~ 533 (544)
T PRK07064 515 LA--KEGPVLVEVDMLSIGPF 533 (544)
T ss_pred Hc--CCCCEEEEEEccccccc
Confidence 87 58999999998743333
No 131
>PRK08266 hypothetical protein; Provisional
Probab=99.37 E-value=3.5e-12 Score=147.81 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=94.6
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|+++| .++++|||++|||+|+ |..++|.+|.++++|+++||.||+. +|.
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~-------------y~~ 461 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNA-------------YGN 461 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------chH
Confidence 48999999999999887 4689999999999997 7789999999999999999999875 232
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+. ..++.. | ..+ ..+.+ .-.++...++++||+++..+ .+.++|.+++++
T Consensus 462 ~~-~~~~~~----~-----~~~----~~~~~--------------~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~ 510 (542)
T PRK08266 462 VR-RDQKRR----F-----GGR----VVASD--------------LVNPDFVKLAESFGVAAFRV---DSPEELRAALEA 510 (542)
T ss_pred HH-HHHHHh----c-----CCC----cccCC--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHH
Confidence 21 011000 0 000 00000 01234567889999998855 679999999999
Q ss_pred HHhcCCCCCEEEEEEEeccC
Q 004968 351 VASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg~ 370 (721)
+.+ .++|++|+|.|.++.
T Consensus 511 a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 511 ALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHh--CCCcEEEEEEecCCC
Confidence 887 578999999998764
No 132
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.36 E-value=3.8e-12 Score=148.71 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=94.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRT-------------LG 477 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 3489999999999999984 578999999999997 8889999999999999999999985 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++...... ..+. +. ..++...++|++|+++..+ ++.++|.++|
T Consensus 478 ~~~~-~~~~~~~~~-------------~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 526 (586)
T PRK06276 478 MVYQ-WQNLYYGKR-------------QSEV--------------HLGETPDFVKLAESYGVKADRV---EKPDEIKEAL 526 (586)
T ss_pred HHHH-HHHHHhCCC-------------cccc--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 3211 101000000 0000 00 0134567889999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEec
Q 004968 349 QEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~k 368 (721)
+++.+ .++|.||+|.+..
T Consensus 527 ~~a~~--~~~p~lIeV~i~~ 544 (586)
T PRK06276 527 KEAIK--SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHh--CCCCEEEEEEecc
Confidence 99987 5899999999964
No 133
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.36 E-value=5.2e-12 Score=147.64 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=117.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|...+. .++.++.|.| |+.|.+.++.-. ..+++- ...+.|++|+++|+|+|
T Consensus 386 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~g~mG~glp~aiG 446 (588)
T PRK07525 386 MHPRQALREIQKALP-EDAIVSTDIGNNCSIANSYLRFE-----KGRKYL-------------APGSFGNCGYAFPAIIG 446 (588)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEECCcccHHHHHHhcccC-----CCCeEE-------------ccccccccccHHHHHHH
Confidence 334445555554443 3556778998 677777544311 111111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .+.. .
T Consensus 447 a~la~----p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~-------------y~~~~~-~~~~----~ 502 (588)
T PRK07525 447 AKIAC----PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQ-------------WGAEKK-NQVD----F 502 (588)
T ss_pred HHHhC----CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hHHHHH-HHHH----H
Confidence 99984 589999999999997 7889999999999999999988875 343311 0000 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcC-CCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~-~~~P~l 361 (721)
|.. . ..+. ++ -.++...+++++|+++..+ .+.++|.++++++.+.. .++|+|
T Consensus 503 ~~~------~---~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~l 556 (588)
T PRK07525 503 YNN------R---FVGT--------------ELDNNVSYAGIAEAMGAEGVVV---DTQEELGPALKRAIDAQNEGKTTV 556 (588)
T ss_pred hCC------C---cccc--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhcCCCCCcEE
Confidence 000 0 0000 00 0134567889999998865 78999999999887631 258999
Q ss_pred EEEEEeccCC
Q 004968 362 VHVVTEENRR 371 (721)
Q Consensus 362 I~v~T~kg~G 371 (721)
|+|.+.+..|
T Consensus 557 Iev~~~~~~~ 566 (588)
T PRK07525 557 IEIMCNQELG 566 (588)
T ss_pred EEEEeccccC
Confidence 9999975544
No 134
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.34 E-value=2.5e-12 Score=148.85 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=91.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|+||+++|+|+|+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+.. |
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y-------------~ 462 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------T 462 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------E
Confidence 3489999999999999984 689999999999997 99999999999999999999999862 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce----EEeccCCCCHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY----YIGPVDGHNIEDLI 345 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~----~~g~vdGhd~~~l~ 345 (721)
.+.. ++.. ...|. ++-.+++..++++||.. +..+ .+.++|.
T Consensus 463 ~i~~-~~~~--~~~~~-----------------------------~~~~~df~~la~a~G~~~~~~~~~v---~~~~el~ 507 (539)
T TIGR03393 463 VERA-IHGA--EQRYN-----------------------------DIALWNWTHLPQALSLDPQSECWRV---SEAEQLA 507 (539)
T ss_pred EEEe-ecCC--CCCcC-----------------------------cCCCCCHHHHHHHcCCCCccceEEe---ccHHHHH
Confidence 2210 0000 00000 00013445677888874 5545 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEec
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~k 368 (721)
++++++.+ .++|+||+|.+.+
T Consensus 508 ~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 508 DVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHhc--cCCeEEEEEEcCc
Confidence 99999987 5899999999853
No 135
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.34 E-value=1.2e-10 Score=130.70 Aligned_cols=247 Identities=19% Similarity=0.199 Sum_probs=174.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcc---eEEEEcCCCCcCCCCCCcCcHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP---VRFVITSAGLVGSDGPTQCGAFDI 519 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~dG~TH~~~~di 519 (721)
+-||+.+..|.-|..+|+|++..|.|.++..-...+.++.|.+++. ++.... |+++.+..|..+ -|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~Gv~GGlviv~aDDpg~~S-----Sqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAGVTGGLVIVVADDPGMHS-----SQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcCccccEEEEEccCCCccc-----ccchhHh
Confidence 7899999999999999999999999999999989999999998665 554332 555556666522 2222333
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCCc------ccc----cCCCCC--CcceecCceEE-
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGAI------VRT----DLPGYR--GIPIEIGKGKV- 583 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~~------~~~----~~p~~~--~~~~~~gk~~v- 583 (721)
.++...-.+-|+.|+|+||+.++++.+++.. ..|+++|...... ... +....+ ....+.+++..
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 4555556677999999999999999999854 4599998754321 000 000000 01111111100
Q ss_pred ------------------------------EEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 584 ------------------------------LVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 584 ------------------------------l~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
+.-+ .++-||+.|-....+++|.+. .|++..++.+-+.+||+.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~---lgl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALED---LGLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHH---cCCCceeEEecCCcCCCHHH
Confidence 0013 689999999999999888654 58999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 632 VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 632 i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++.++..+.|+||||.-. =+-.+|.+.+.+.+. ++...|-.+.+.+- ..-+|++.|...|.++++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP~--------~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLPM--------EGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccCc--------ccccCHHHHHHHHHHHhC
Confidence 9999999999999999863 245566666665543 34444543444331 234899999999999886
Q ss_pred c
Q 004968 712 R 712 (721)
Q Consensus 712 ~ 712 (721)
+
T Consensus 355 ~ 355 (640)
T COG4231 355 K 355 (640)
T ss_pred c
Confidence 5
No 136
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.34 E-value=3.7e-12 Score=148.21 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=112.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...++ +++.++.|.| |..|....+.-.+ .+++ ...-+.|++|+++|+|+|
T Consensus 369 l~~~~~~~~l~~~~~-~~~ivv~d~G~~~~~~~~~~~~~~-----~~~~-------------~~~~~~g~mG~glpaaiG 429 (566)
T PRK07282 369 VQPQAVIERIGELTN-GDAIVVTDVGQHQMWAAQYYPYQN-----ERQL-------------VTSGGLGTMGFGIPAAIG 429 (566)
T ss_pred cCHHHHHHHHHhhcC-CCeEEEECCcHHHHHHHHhcccCC-----CCcE-------------ecCCccccccchhhHhhe
Confidence 444455555544433 4566778988 5556553222100 0011 111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+..
T Consensus 430 a~lA~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~---------- 480 (566)
T PRK07282 430 AKIAN----PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHS-------------LGMVRQ---------- 480 (566)
T ss_pred eheec----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------chHHHH----------
Confidence 99984 589999999999997 9999999999999999999999985 333310
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+++..... .+.. ..+ ..++...++|+||+++.++ .+.++|.++++.+ . .++|+||
T Consensus 481 ~q~~~~~~------~~~~------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~~-~--~~~p~lI 536 (566)
T PRK07282 481 WQESFYEG------RTSE------------SVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQDLEVI-T--EDVPMLI 536 (566)
T ss_pred HHHHHhCC------Cccc------------ccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHh-c--CCCCEEE
Confidence 11000000 0000 000 0234567899999999866 7899999999754 3 4899999
Q ss_pred EEEEec
Q 004968 363 HVVTEE 368 (721)
Q Consensus 363 ~v~T~k 368 (721)
+|.+.+
T Consensus 537 eV~v~~ 542 (566)
T PRK07282 537 EVDISR 542 (566)
T ss_pred EEEeCC
Confidence 999965
No 137
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.30 E-value=1.5e-11 Score=142.20 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=111.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.++.|.| |..|....+.-+. .+ .| +. ...|++|+++|+|+|
T Consensus 359 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~--------~~---~~-------~~-~~~g~mG~~lp~aiG 418 (530)
T PRK07092 359 LSVAFVLQTLAALRP-ADAIVVEEAPSTRPAMQEHLPMRR--------QG---SF-------YT-MASGGLGYGLPAAVG 418 (530)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHhcCcCC--------CC---ce-------Ec-cCCCcccchHHHHHH
Confidence 334445555544443 4566678988 5556553332110 00 01 00 124889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+++ |..++|++|+++++|+++||.||+. +|.+. .+++..
T Consensus 419 a~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~-------------~~~~~-~~~~~~---- 474 (530)
T PRK07092 419 VALAQ----PGRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGR-------------YGALR-WFAPVF---- 474 (530)
T ss_pred HHHhC----CCCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChH-------------HHHHH-HHHHhh----
Confidence 99984 588999999999998 6779999999999999999999984 22221 000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
.. ....+. ..-..+...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 475 -------~~--~~~~~~--------------~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 526 (530)
T PRK07092 475 -------GV--RDVPGL--------------DLPGLDFVALARGYGCEAVRV---SDAAELADALARALA--ADGPVLVE 526 (530)
T ss_pred -------CC--CCCCCC--------------CCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00 000000 001133466889999998855 579999999999987 58999999
Q ss_pred EEE
Q 004968 364 VVT 366 (721)
Q Consensus 364 v~T 366 (721)
+.|
T Consensus 527 v~~ 529 (530)
T PRK07092 527 VEV 529 (530)
T ss_pred EEc
Confidence 987
No 138
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.30 E-value=1.2e-11 Score=130.69 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=110.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCC-CeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~-~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
....+|.+++.|.|+++|.+.++++ ..||+++|||++..+- +|+|++|+.++.|+++||.||++.+....+.+.+.+.
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ 145 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPY 145 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcC
Confidence 4578899999999999999887664 5677799999987655 4999999999999999999999865555556777788
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|+..++- ..|..... + +...++.++|..|+..++-.++.++.+++
T Consensus 146 ga~t~ts---------------------p~G~~~~k---------k-----di~~i~~a~g~~yVA~~~~~~~~~~~~~i 190 (300)
T PRK11864 146 GAWTTTT---------------------PGGKREHK---------K-----PVPDIMAAHKVPYVATASIAYPEDFIRKL 190 (300)
T ss_pred CCccccC---------------------CCCCcCCC---------C-----CHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 8653211 01111000 0 11346678899888888888999999999
Q ss_pred HHHHhcCCCCCEEEEEEEe--ccCCCcc
Q 004968 349 QEVASLGSMGPVLVHVVTE--ENRRAED 374 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~--kg~G~~~ 374 (721)
++|.+ .+||.+|++.+. .++++.+
T Consensus 191 ~~A~~--~~Gps~I~~~spC~~~~~~~~ 216 (300)
T PRK11864 191 KKAKE--IRGFKFIHLLAPCPPGWRFDP 216 (300)
T ss_pred HHHHh--CCCCEEEEEeCCCCCCCCcCh
Confidence 99998 589999999875 3444433
No 139
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.29 E-value=3.6e-11 Score=115.58 Aligned_cols=126 Identities=25% Similarity=0.336 Sum_probs=101.7
Q ss_pred ChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC
Q 004968 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP 511 (721)
Q Consensus 433 ~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~ 511 (721)
.+-+...+.|++.+..++.|++++++|.|+|..|.+|++.+ +.+|+.++++++. .++..++||+++....|..+.++.
T Consensus 25 ~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~ 103 (154)
T cd06586 25 SLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQ 103 (154)
T ss_pred HHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccC
Confidence 34333345689999999999999999999999987888876 5999999999996 778899999999977776555678
Q ss_pred CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004968 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (721)
Q Consensus 512 TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r 560 (721)
+||..+++.+++.+|++.+..|+..++. ..+..|+. ...+|++|++|+
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELP-AGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHH-HHHHHHHHHHhcCCCCEEEEccC
Confidence 8999999999999999988887775444 44444444 236799998874
No 140
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.28 E-value=1.5e-11 Score=127.37 Aligned_cols=141 Identities=19% Similarity=0.259 Sum_probs=91.8
Q ss_pred CcCCCcchHHHHHHHHHHHHH-cCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDI-KGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l-~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|..- ..++++|||++|||++.. |...++.++.++++|+++||.||+...+-..+.......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~ 140 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPL 140 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcC
Confidence 458999999999999887211 135899999999999741 356688889999999999999998632211010000000
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|.. .. .. ..+ ...-.++...+++++|+.+...+.-.++++|.++|
T Consensus 141 g~~-------~~-------------~~-~~~--------------~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al 185 (237)
T cd02018 141 GAD-------SK-------------MA-PAG--------------KKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVV 185 (237)
T ss_pred CCc-------cc-------------cc-CCC--------------CcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHH
Confidence 000 00 00 000 00011345678899999998633336799999999
Q ss_pred HHHHhcCCCCCEEEEEEEe
Q 004968 349 QEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~ 367 (721)
+++.+ +.++|++|++.+.
T Consensus 186 ~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 186 KEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHh-cCCCCEEEEEeCC
Confidence 99975 1388999999974
No 141
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.27 E-value=2.6e-11 Score=129.08 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=93.0
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|.++|+|+|+++| .++++||++.|||++. ++...+|.+|+++++|+++||.||+..++..++.+...+.|..
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~ 144 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSK 144 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcc
Confidence 6789999999999998 4689999999999973 3667899999999999999999998643322221111111110
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|.. ....+...+++++|+.++....-.+.++|.++++++
T Consensus 145 ~~---------------------~~~~g~~--------------~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A 189 (301)
T PRK05778 145 TK---------------------TAPYGNI--------------EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKA 189 (301)
T ss_pred cc---------------------cccCCCc--------------CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHH
Confidence 00 0000000 001234567889999886332337899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|.+|+|.+.
T Consensus 190 ~~--~~GpalIeV~~~ 203 (301)
T PRK05778 190 IS--HKGFAFIDVLSP 203 (301)
T ss_pred Hh--CCCCEEEEEcCC
Confidence 87 589999998774
No 142
>PLN02573 pyruvate decarboxylase
Probab=99.27 E-value=6.7e-12 Score=146.23 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=91.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+.++|.+|+++++|+++||.||+.. |
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~y-------------g 486 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGY-------------T 486 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------e
Confidence 4589999999999999985 589999999999996 99999999999999999999999863 3
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeC-----ceEEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG-----LYYIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G-----~~~~g~vdGhd~~~l 344 (721)
.+.. . + ...| . ..-.++...++++|| +++..+ .+.++|
T Consensus 487 ~~~~-~---~-~~~~-----------~------------------~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~eL 529 (578)
T PLN02573 487 IEVE-I---H-DGPY-----------N------------------VIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEEL 529 (578)
T ss_pred EEEe-e---c-ccCc-----------c------------------ccCCCCHHHHHHHhcCcCCceeEEEe---cCHHHH
Confidence 2210 0 0 0000 0 000123456777875 777756 689999
Q ss_pred HHHHHHHHhcCCCCCEEEEEEEec
Q 004968 345 ISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 345 ~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
.++++++.+...++|+||+|.+.+
T Consensus 530 ~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 530 IEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHhhCCCCcEEEEEEcCc
Confidence 999999874114889999999853
No 143
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.26 E-value=2.8e-11 Score=127.33 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=94.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|.++|+|+|+++| +++++||+++|||++. .+..++|.+|+++++|+++||.||+..++..++.+...+.|..
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 5589999999999888 4689999999999975 2337899999999999999999998643322222222222211
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|.. ....+...+++++|..++...+-.++++|.++++++
T Consensus 135 ~~---------------------~~p~g~~--------------~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~A 179 (280)
T PRK11869 135 TP---------------------TQPWGVF--------------EEPFNPIALAIALDASFVARTFSGDIEETKEILKEA 179 (280)
T ss_pred cc---------------------cCCCCcc--------------CCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 00 0000000 001234568899999988755557899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|.+|++.+.
T Consensus 180 l~--~~Gp~lIeV~~p 193 (280)
T PRK11869 180 IK--HKGLAIVDIFQP 193 (280)
T ss_pred Hh--CCCCEEEEEECC
Confidence 98 589999999874
No 144
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.25 E-value=2.2e-11 Score=128.33 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=89.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
+.+|.++|+|+|+++|. ++++||+++|||+++. +.-.++.+|+++++|+++||.||+...+-.++++...+.|..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 46789999999999984 6899999999999852 455678889999999999999998632211111111111100
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
. .....+.. ....+...+++++|+.++....-.++++|.++++++
T Consensus 143 ~---------------------~~~~~g~~--------------~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~A 187 (277)
T PRK09628 143 T---------------------VTAQYGNI--------------DPTFDACKLATAAGASFVARESVIDPQKLEKLLVKG 187 (277)
T ss_pred e---------------------eeccCCCc--------------CCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHH
Confidence 0 00000000 000133567889999874111226899999999999
Q ss_pred HhcCCCCCEEEEEEEec
Q 004968 352 ASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~k 368 (721)
.+ .++|++|+|.+.-
T Consensus 188 l~--~~Gp~lIeV~~~c 202 (277)
T PRK09628 188 FS--HKGFSFFDVFSNC 202 (277)
T ss_pred Hh--CCCCEEEEEcCCC
Confidence 88 5899999998854
No 145
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.25 E-value=4.3e-11 Score=139.48 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=91.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+++| . +++|||++|||+|+ |...+|.+|+++++|+++||.||+...+ ++
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~----------~~ 485 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGI----------FS 485 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCcc----------cc
Confidence 447799999999999988 3 78899999999997 7778999999999999999999985211 11
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+ ...+. ..|.. ++....-.++...++++||+.+..+ ++.++|.++++
T Consensus 486 ~~----~~~~~-~~~~~------------------------~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al~ 533 (568)
T PRK07449 486 LL----PQPEE-EPVFE------------------------RFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEALA 533 (568)
T ss_pred CC----CCCCC-cchhh------------------------HhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHHH
Confidence 10 00000 00000 0000000134567889999998755 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEec
Q 004968 350 EVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (721)
++.+ .++|++|+|.+.+
T Consensus 534 ~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 534 DALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHhc--CCCCEEEEEeCCh
Confidence 9986 5899999999954
No 146
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.22 E-value=3.2e-11 Score=139.33 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=90.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|+++|. ++++|+++|||+|+ |+.++|.+|.++++|+++||.||+.. |.
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------~~ 461 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------EM 461 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCcc-------------ce
Confidence 489999999999999984 35568899999996 99999999999999999999999852 22
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+.. .++. ..| . ++-.++...++++||.++..+ ++.++|.+++++
T Consensus 462 ~~~-~~~~---~~~---------------~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~ 505 (535)
T TIGR03394 462 LRV-FQPE---SAF---------------N--------------DLDDWRFADMAAGMGGDGVRV---RTRAELAAALDK 505 (535)
T ss_pred eeh-hccC---CCc---------------c--------------cCCCCCHHHHHHHcCCCceEe---CCHHHHHHHHHH
Confidence 210 0000 000 0 000134466889999998866 789999999999
Q ss_pred HHhcCCCCCEEEEEEEecc
Q 004968 351 VASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg 369 (721)
+.+. .++|++|+|.+.+.
T Consensus 506 a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 506 AFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHhc-CCCeEEEEEECCcc
Confidence 8763 35589999998653
No 147
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.20 E-value=2.9e-11 Score=127.25 Aligned_cols=133 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDG-al~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
|.+|.++|+|+|+++| .++++||+++||| ++. +..++|.+|++++.|+++||.||+...+..++.+...+.|.
T Consensus 59 ~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~ 132 (279)
T PRK11866 59 GIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGV 132 (279)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCc
Confidence 6679999999999998 4589999999999 575 77789999999999999999999864443333333333322
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... ....|+... ..+...+++++|..++......++++|.+++++
T Consensus 133 ~t~---------------------~t~~g~~~~--------------~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~ 177 (279)
T PRK11866 133 KTK---------------------TTPDGNIEE--------------PFNPIALALAAGATFVARGFSGDVKHLKEIIKE 177 (279)
T ss_pred eee---------------------ccCCCCCCC--------------CCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHH
Confidence 100 000011000 012346788999988766666899999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|.+|++.+.
T Consensus 178 Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 178 AIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 998 589999999874
No 148
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.20 E-value=9e-11 Score=136.73 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++| .++++||+++|||+|+-+..-++|++|+++++|+++||.||+.. |
T Consensus 428 ~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~y-------------g 490 (569)
T PRK08327 428 SAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW-------------L 490 (569)
T ss_pred CCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccc-------------c
Confidence 458999999999999987 46899999999999975444457999999999999999999752 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++......+... ..... ...+ -.++...++|+||+.+..+ ++.++|.+++
T Consensus 491 ~~~~-~~~~~~~~~~~~~-------~~~~~-------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 546 (569)
T PRK08327 491 AVKE-AVLEVYPEGYAAR-------KGTFP-------------GTDFDPRPDFAKIAEAFGGYGERV---EDPEELKGAL 546 (569)
T ss_pred cchh-HHhhhCccccccc-------ccccc-------------cccCCCCCCHHHHHHhCCCCceEe---CCHHHHHHHH
Confidence 2110 0000000000000 00000 0000 0134467889999988755 6899999999
Q ss_pred HHHHhc--CCCCCEEEEEEEe
Q 004968 349 QEVASL--GSMGPVLVHVVTE 367 (721)
Q Consensus 349 ~~a~~~--~~~~P~lI~v~T~ 367 (721)
+++.+. +.++|++|||.+.
T Consensus 547 ~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 547 RRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHhcCCCcEEEEEEcc
Confidence 888652 1267999999873
No 149
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.20 E-value=8.5e-11 Score=124.58 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCC-cccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT-TMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGa-l~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
|.+|.++|+|+|+++| .++++||+++|||+ ++ +...+|.+|+++++|+++||.||+..++..++.+...+.|.
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 7789999999999998 46899999999996 65 67789999999999999999999864332222111111110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... ....|... ...+...+++++|..++....-.+.++|.++|++
T Consensus 143 ~~~---------------------~~~~g~~~--------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~ 187 (286)
T PRK11867 143 VTK---------------------TTPYGSIE--------------PPFNPVELALGAGATFVARGFDSDVKQLTELIKA 187 (286)
T ss_pred ccc---------------------cccCCCCC--------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHH
Confidence 000 00001000 0012245677788877643334679999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|++|++.+.
T Consensus 188 Al~--~~Gp~lIev~~~ 202 (286)
T PRK11867 188 AIN--HKGFSFVEILQP 202 (286)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 987 589999999874
No 150
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.17 E-value=6.8e-11 Score=125.78 Aligned_cols=174 Identities=16% Similarity=0.240 Sum_probs=122.6
Q ss_pred HHHHHHHhcccCCCCcEEEe--cCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 128 VELTVALHHVFHAPVDKILW--DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 128 vel~~aL~~vf~~p~D~iv~--d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
-+.+-.|..+-+.-.|+++. .+| ||.|+...++.+ .+|+|- .+| |-|.||.|+|+|+|+
T Consensus 475 Q~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~-----kP~~~~-tSG------------GLGtMGfGLPAAIGA 536 (675)
T KOG4166|consen 475 QYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWK-----KPRQWL-TSG------------GLGTMGFGLPAAIGA 536 (675)
T ss_pred HHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhccc-----Ccccee-ecC------------CccccccCcchhhcc
Confidence 34555565554433456554 566 999998666543 335554 223 568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
.+| +++..||-+-||++|. |+..+|.++.+.++|+.+++.||+.+ |++ ..++.+.-...|
T Consensus 537 sVA----~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq-------------GMV-tQWq~lFYe~ry 596 (675)
T KOG4166|consen 537 SVA----NPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ-------------GMV-TQWQDLFYEARY 596 (675)
T ss_pred ccc----CcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh-------------hhH-HHHHHHHHHhhh
Confidence 998 5699999999999998 99999999999999999999999863 333 222222111111
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. -+. -..|++-.+++++|+...++ ..-++|.+.+++..+ .+||+|++|
T Consensus 597 s--------HTh-------------------Q~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkGPvLleV 644 (675)
T KOG4166|consen 597 S--------HTH-------------------QENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKGPVLLEV 644 (675)
T ss_pred c--------ccc-------------------ccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCCCeEEEE
Confidence 0 000 11244456788999998876 677899999999888 689999999
Q ss_pred EEeccCC
Q 004968 365 VTEENRR 371 (721)
Q Consensus 365 ~T~kg~G 371 (721)
...+-.-
T Consensus 645 ~v~~keh 651 (675)
T KOG4166|consen 645 IVPHKEH 651 (675)
T ss_pred EccCccc
Confidence 8865433
No 151
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.14 E-value=9.2e-11 Score=123.87 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=88.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
+.+|.++|+|+|+++| .++++|||++|||++. ++..++|.+|++++.|+++||.||+..++..++++...+.|..
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~ 127 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVK 127 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcc
Confidence 4469999999999988 4689999999999974 5778899999999999999999998643322222222222211
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|... ..+.+....+++++|+...+.+ .+.++|.++++++
T Consensus 128 ~~---------------------~~~~g~~~------------~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~A 172 (287)
T TIGR02177 128 TK---------------------SLPYPNIQ------------DPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKEA 172 (287)
T ss_pred ee---------------------ecccCccC------------CCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHHH
Confidence 00 00000000 0001111235566666655422 6899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|++|+|.+.
T Consensus 173 l~--~~GpslIeV~~p 186 (287)
T TIGR02177 173 IN--HKGYALVDILQP 186 (287)
T ss_pred Hh--CCCCEEEEEeCC
Confidence 87 589999999874
No 152
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.12 E-value=4.5e-10 Score=118.96 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=112.0
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 189 ~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+..+..|.+++.|.|++.|.+..+++.+||++.|||++.. .-+++|..|...+.|+++||.||+..+....|.+.+.+.
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~ 144 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPF 144 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCC
Confidence 3457788999999999999887777889999999998742 445899999999999999999999866656666777777
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|+..++-.. ++.. .|++.. .-+...++.++|..|+..++-.++.++.+++
T Consensus 145 Ga~t~tsp~-------------Gk~~---~G~~~~--------------kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i 194 (299)
T PRK11865 145 GASTTTSPA-------------GKYS---RGEDRP--------------KKNMPLIMAAHGIPYVATASIGYPEDFMEKV 194 (299)
T ss_pred CcccccCCC-------------Cccc---CCCCCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 765331110 0000 010000 0011345667888888777778999999999
Q ss_pred HHHHhcCCCCCEEEEEEEe--ccCCCccc
Q 004968 349 QEVASLGSMGPVLVHVVTE--ENRRAEDT 375 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~--kg~G~~~a 375 (721)
++|.+ .+||.+||+.+. .|+|+.+.
T Consensus 195 ~~A~~--~~Gps~I~v~sPC~~~~~~~~~ 221 (299)
T PRK11865 195 KKAKE--VEGPAYIQVLQPCPTGWGFPPE 221 (299)
T ss_pred HHHHh--CCCCEEEEEECCCCCCCCCCHH
Confidence 99998 589999999875 46665553
No 153
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.08 E-value=8.7e-09 Score=125.86 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=184.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCeE----EEecCCCCc--cCh-HHHHHhC-----CCcEeeccccHHHHHHHHHHHH-----
Q 004968 401 RTYDDCFIEALVMEAEKDKDIV----VVHAGMEMD--LSL-QLFQEKF-----PERYFDVGMAEQHAVTFSAGLA----- 463 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv----~i~ad~~~~--~~l-~~f~~~f-----p~R~~d~GIaE~~~v~~AaGlA----- 463 (721)
.+=.+|+...+.+-.+.|..-= .+-+...|+ +++ ..|.+.- -+-+|..|+.|.-+.+++.|.+
T Consensus 20 l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 20 LTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 3447788888777666664321 122234443 233 2333221 1379999999999999999999
Q ss_pred ----hCCCeeEEEecHhhHHHHHHHHHHHhhcCCc----c-eEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeC
Q 004968 464 ----CGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (721)
Q Consensus 464 ----~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Ps 534 (721)
..|.+.+++.-.+.+.++.|.++|. ++... - |++++|..|.... .+-|+..-...+..|| |+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~SS--q~eqdSr~~~~~a~iP---vl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCVSS--SMPHQSDFALIAWHMP---VLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCccC--cCHHHHHHHHHHcCCc---eeCCC
Confidence 6666668887888999999999755 44332 2 5555566665322 2344444444445454 99999
Q ss_pred CHHHHHHHHHHHHHh---CCCCEEEEecCCCc---------c-cc--cCCC-CC--C----cce----------------
Q 004968 535 DEDELVDMVATVASI---DDRPVCFRYPRGAI---------V-RT--DLPG-YR--G----IPI---------------- 576 (721)
Q Consensus 535 d~~E~~~~l~~a~~~---~~~P~~ir~~r~~~---------~-~~--~~p~-~~--~----~~~---------------- 576 (721)
|++|++++...+++. .+-||.+|...... + .. ..|. .+ . ..+
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 999999999999874 34599987643211 0 00 0110 00 0 000
Q ss_pred ----------ecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCC-----CeEEeecCccccccHHHHHHHhccCCe
Q 004968 577 ----------EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGI-----DVTVADARFCKPLDIKLVRELCQNHTF 641 (721)
Q Consensus 577 ----------~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi-----~v~VId~~~l~PlD~e~i~~l~~~~~~ 641 (721)
++.+..+-.++.++.||++|.....++||.+.|...++ .++|+.+-..|||+.+.+++.++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 01111100123679999999999999999998855443 366777779999999999999999999
Q ss_pred EEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHH-cCCCHHHHHHHHHHHhhc
Q 004968 642 LITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL-AGLTGHHIAATALSLLGR 712 (721)
Q Consensus 642 vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~-~gl~~~~I~~~i~~~l~~ 712 (721)
|+||||... =+-..+.+.+..... ..+...+|..|. .|.+ ++.. -.|+++.|.+.+.+.++.
T Consensus 334 VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~---~G~p--llp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 334 ILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDE---DGAP--LLSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred EEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECC---CCCc--CCCCcCCcCHHHHHHHHHHHHhc
Confidence 999999863 133444454443321 112233444221 1110 1112 238999999999777653
No 154
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.08 E-value=3.8e-10 Score=131.98 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=92.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
.|.+|.++|+|+|+++| .++++||+++|||+|. +. .++|.+|.+++.|+++||.||+...+..+++... .+
T Consensus 402 ~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~--~~ 473 (595)
T TIGR03336 402 TLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPG--TG 473 (595)
T ss_pred eeccCchHHHHhhhhhc----CCCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCC--CC
Confidence 37899999999999988 4589999999999996 54 6799999999999999999998632211110000 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
. ...+.. .-..+...+++++|+++..+.+-.+++++.++++
T Consensus 474 -~------------------------~~~~~~--------------~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~ 514 (595)
T TIGR03336 474 -V------------------------TGMGEA--------------TKEISIEELCRASGVEFVEVVDPLNVKETIEVFK 514 (595)
T ss_pred -C------------------------CCCCCc--------------CCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHH
Confidence 0 000000 0012345678899999988877788899999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++..
T Consensus 515 ~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 515 AALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHh--cCCCEEEEEcc
Confidence 9987 58999999865
No 155
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=119.48 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=106.8
Q ss_pred cccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCC-CCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~-G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
.|-+..+.-.+-. |-.|.|.|+.|.|-..|.. .. -+|+...-. ...=-||.|+++|+|+
T Consensus 362 pLtq~~~w~~~~~-fl~p~dviiaetGtS~FG~------------------~~~~lP~~~~~i-~Q~lWGSIG~t~pAal 421 (557)
T COG3961 362 PLTQEWLWNTVQN-FLKPGDVIIAETGTSFFGA------------------LDIRLPKGATFI-SQPLWGSIGYTLPAAL 421 (557)
T ss_pred cccHHHHHHHHHh-hCCCCCEEEEccccccccc------------------eeeecCCCCeEE-cccchhhcccccHhhh
Confidence 3555544433322 3359999999999633322 11 244431100 0011389999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhc
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSS 281 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~ 281 (721)
|.++|.+ ++++|.++|||+++ ++-+++.+..+|+ .|+|||+||++|+ +...-.+...
T Consensus 422 Ga~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYT-IEr~IHg~~~--------------- 479 (557)
T COG3961 422 GAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYT-IERAIHGPTA--------------- 479 (557)
T ss_pred hhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcE-EEehhcCCCc---------------
Confidence 9999964 89999999999998 9999999999999 6788888888873 2111111111
Q ss_pred hHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE-EeccCCCCHHHHHHHHHHHHhcCCCCCE
Q 004968 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY-IGPVDGHNIEDLISVLQEVASLGSMGPV 360 (721)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~-~g~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (721)
.|+++. . .+...+.++||..- .....-...+++..+++.+.+. .+++.
T Consensus 480 -~YNdI~---------------~--------------Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~ 528 (557)
T COG3961 480 -PYNDIQ---------------S--------------WDYTALPEAFGAKNGEAKFRATTGEELALALDVAFAN-NDRIR 528 (557)
T ss_pred -Cccccc---------------c--------------cchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcC-CCceE
Confidence 222221 1 12234566665331 1001113567777888887764 57899
Q ss_pred EEEEEEec
Q 004968 361 LVHVVTEE 368 (721)
Q Consensus 361 lI~v~T~k 368 (721)
+|||+.-+
T Consensus 529 lIEv~lp~ 536 (557)
T COG3961 529 LIEVMLPV 536 (557)
T ss_pred EEEEecCc
Confidence 99999743
No 156
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.01 E-value=4.2e-08 Score=119.59 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=185.1
Q ss_pred ccHHHHHHHHHHHHHHcCCC--e---EEEecCCCCc--cCh-HHHHHhC-----CCcEeeccccHHHHHHHH--------
Q 004968 401 RTYDDCFIEALVMEAEKDKD--I---VVVHAGMEMD--LSL-QLFQEKF-----PERYFDVGMAEQHAVTFS-------- 459 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~--i---v~i~ad~~~~--~~l-~~f~~~f-----p~R~~d~GIaE~~~v~~A-------- 459 (721)
.+=.+|+...+.+..++|.. + -+++ ...|+ +++ ..|.+.- -+-+|..|+.|.-+.+++
T Consensus 28 l~G~qAivR~~l~q~~~D~~aG~~ta~~vs-GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 28 LTGTQALVRLPLLQRERDRAAGLNTAGFVS-GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeHHHHHHHHHHHHhhHHHhcCCCccceEE-eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 34578888887776666632 2 2222 34443 233 2333211 238999999999999999
Q ss_pred -HHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc----c-eEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEee
Q 004968 460 -AGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (721)
Q Consensus 460 -aGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~P 533 (721)
.|.+..|.+.+++.-.+.+.|+.|.++|. ++... - |++++|..|.... .+-|+..-...+..| -|+.|
T Consensus 107 ~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~SS--q~eqdSr~~~~~a~i---Pvl~P 180 (1165)
T PRK09193 107 FPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKSS--TLPHQSEHAFKAAGM---PVLFP 180 (1165)
T ss_pred ccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCccc--cchhhhHHHHHHcCC---ceeCC
Confidence 77789999999999999999999999755 33332 2 5555566665322 233344333444444 59999
Q ss_pred CCHHHHHHHHHHHHHh---CCCCEEEEecCCCc------c----c--ccCCCCCCcceecC----ce-------------
Q 004968 534 SDEDELVDMVATVASI---DDRPVCFRYPRGAI------V----R--TDLPGYRGIPIEIG----KG------------- 581 (721)
Q Consensus 534 sd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~------~----~--~~~p~~~~~~~~~g----k~------------- 581 (721)
+|++|+.++...+++. ..-||.+|...... . . ...|. ++..+.+ +|
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~f~~~~~g~~~r~~~~p~~~~~~~~~ 258 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--DFEMPPGGLNIRWPDPPLEQEARLLD 258 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--cccCCcccccccCCCCcHHHHHHHHH
Confidence 9999999999999874 35599987643211 0 0 00110 0111111 10
Q ss_pred ----------------EEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCC--------eEEeecCccccccHHHHHHH
Q 004968 582 ----------------KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGID--------VTVADARFCKPLDIKLVREL 635 (721)
Q Consensus 582 ----------------~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~--------v~VId~~~l~PlD~e~i~~l 635 (721)
++... +.++-||+.|.....+++|.+.| |++ +.|+.+-..||||.+.+++.
T Consensus 259 ~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~F 335 (1165)
T PRK09193 259 YKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEPQGVRAF 335 (1165)
T ss_pred HHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCHHHHHHH
Confidence 11111 36799999999999999887765 554 88999999999999999999
Q ss_pred hccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHH-cCCCHHHHHHHHHHHhhc
Q 004968 636 CQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL-AGLTGHHIAATALSLLGR 712 (721)
Q Consensus 636 ~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~-~gl~~~~I~~~i~~~l~~ 712 (721)
++..+.|+||||... =+-..|.+.+.+.+. ..+...+|-.| ++|. .++-. -.|+++.|.+.+.+.++.
T Consensus 336 a~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~---~~g~--~llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 336 AEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFD---PQGN--WLLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred HhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeC---CCCC--ccCCCcCCcCHHHHHHHHHHHhhh
Confidence 999999999999752 234455555544332 22223445432 1121 12222 238999999999777653
No 157
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.01 E-value=7.4e-09 Score=110.04 Aligned_cols=225 Identities=19% Similarity=0.233 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHh---------------------cCCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecC
Q 004968 93 SLTIKELKQLAVEIRSELSSIVS---------------------KTEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDV 149 (721)
Q Consensus 93 ~~~~~~l~~la~eiR~~~~~~~~---------------------~~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~ 149 (721)
+++.++|+.+-+-+|.-..-.+. +.-||.|.+.|+.=+.+.|.++-. ...|. +|...
T Consensus 1 ~l~~~~l~~~d~~wrAanYLsv~qiYL~dNpLL~~pL~~ediKprllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~Gp 80 (379)
T PF09364_consen 1 KLSDEELEALDAYWRAANYLSVGQIYLRDNPLLREPLKPEDIKPRLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGP 80 (379)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHBSS-TT--SS--GGGB-SS--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCCHHHCCcccccccCCCccHHHHHHHHHHHHHhcCCceEEEecC
Confidence 35677777776666643221111 134999999998766666655422 22344 56788
Q ss_pred CchH---HHHHHHhCchhh-----------hHH-HHhhCCCCCCCCC--CCCCCCCcCcCCCcchHHHHHHHHHHHHHcC
Q 004968 150 GEQT---YAHKILTGRRSL-----------IHT-LRKKDGISGYTSR--SESEYDPFNAGHGCNSVSAGLGMAVARDIKG 212 (721)
Q Consensus 150 GH~~---y~h~~ltGr~~~-----------~~~-~r~~ggl~G~~~~--~es~~d~~~~G~~G~~is~A~G~AlA~~l~g 212 (721)
||.. .+...|.|-..+ |.. +|||.--.|+|+. .+.|....-.|-+|++++.|.|+++- +
T Consensus 81 GHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~D----n 156 (379)
T PF09364_consen 81 GHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFD----N 156 (379)
T ss_dssp GGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-----
T ss_pred CCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCccccCcCCCCccCcCcchhhHHHHHhhcccC----C
Confidence 9987 677788884222 333 4666433455543 23444333458899999999998874 6
Q ss_pred CCCeEEEEEcCCCcccchHHHHHHHhhhcC----CCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHH
Q 004968 213 KRECIVTVISNGTTMAGQAYEAMSNAGYLD----SNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQL 287 (721)
Q Consensus 213 ~~~~VvaviGDGal~~G~~~Ealn~A~~~~----~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 287 (721)
+|-.|+||+|||+..+|-.--+...-..++ ..|+-|+.=|++- +.|| .|.++.
T Consensus 157 Pdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pT--------------il~r~~-------- 214 (379)
T PF09364_consen 157 PDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPT--------------ILARMS-------- 214 (379)
T ss_dssp TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB---------------HHHHS---------
T ss_pred CCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccCCe--------------EeeecC--------
Confidence 799999999999998886433333233333 4689999999983 2222 111111
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHH--------HHHHHhc----C
Q 004968 288 REVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV--------LQEVASL----G 355 (721)
Q Consensus 288 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a--------l~~a~~~----~ 355 (721)
-.++ ..+|+.+||..+ .|+|+|++++... ++++++. +
T Consensus 215 --------------~~eL----------------~~lf~G~Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar 263 (379)
T PF09364_consen 215 --------------DEEL----------------EALFRGYGYEPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAAR 263 (379)
T ss_dssp --------------HHHH----------------HHHHHHTTEEEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHH----------------HHHHHhCCCeEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 347899999987 7899998655332 2233221 0
Q ss_pred ----CCCC--EEEEEEEeccCCCcc
Q 004968 356 ----SMGP--VLVHVVTEENRRAED 374 (721)
Q Consensus 356 ----~~~P--~lI~v~T~kg~G~~~ 374 (721)
..+| -+|..+|-||++.|.
T Consensus 264 ~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 264 SGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp T--SS----EEEEEEE--TTTTS-S
T ss_pred cCCCCCCCCCcEEEEECCcccCCcc
Confidence 1233 388899999999764
No 158
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.93 E-value=2.8e-09 Score=137.06 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cCCCcc--hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc--CCCEEEEEECCCCCcCCCccCCCCc
Q 004968 191 AGHGCN--SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL--DSNMIVILNDSRHSLHPKIEESPKT 266 (721)
Q Consensus 191 ~G~~G~--~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~--~~plivIv~dN~~~s~~t~~~~~~~ 266 (721)
-|.+|. ++|+|+|+++|. +++|||++|||+|+ |..++|.+|+++ ++|+++||.||+..
T Consensus 758 ~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg----------- 819 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG----------- 819 (1655)
T ss_pred CCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc-----------
Confidence 478888 699999999883 78999999999996 999999999985 89999999999851
Q ss_pred chhhhhhhhhhhh-hchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHH
Q 004968 267 SINALSSTLSRIQ-SSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (721)
Q Consensus 267 ~~g~l~~~l~~~~-~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~ 345 (721)
|.. +++.... ..+.+ .+.+......++...++++||+++..+ .+.++|.
T Consensus 820 --gi~-~~l~~~~~~~~~~------------------------~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL~ 869 (1655)
T PLN02980 820 --AIF-SLLPIAKRTEPRV------------------------LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSELE 869 (1655)
T ss_pred --Hhh-hcCccCCCCcchh------------------------HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHHH
Confidence 111 1110000 00000 000000001234567889999999977 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEecc
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
++++++.+ .++|+||+|.|.+.
T Consensus 870 ~aL~~a~~--~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 870 DALFTSQV--EQMDCVVEVESSID 891 (1655)
T ss_pred HHHHHhhc--cCCCEEEEEecChh
Confidence 99999886 58999999999753
No 159
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.88 E-value=2.7e-08 Score=107.63 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=121.9
Q ss_pred CCcccHHHHHHHHhcccCCCCcEEEecCCch-HHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHH
Q 004968 122 KSSLAAVELTVALHHVFHAPVDKILWDVGEQ-TYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200 (721)
Q Consensus 122 ~sslg~vel~~aL~~vf~~p~D~iv~d~GH~-~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~ 200 (721)
-+-..+.+++-++.... .+++.+|...|-- .=.|+++.- +-|. +-|-++|...||+-|+-
T Consensus 392 nt~ptq~~vigav~~~~-~~~svvvcAAGsLPGdLhkLW~~---------------~~p~---~YH~EYgfSCMGYEiaG 452 (617)
T COG3962 392 NTLPTQTQVIGAVQRTI-SDDSVVVCAAGSLPGDLHKLWRA---------------GVPG---TYHLEYGFSCMGYEIAG 452 (617)
T ss_pred ccCccchhHHHHHHhhc-CCCcEEEEeCCCCcHHHHHHhcc---------------CCCC---ceeeeeccccccccccc
Confidence 34555666665554332 2566777766631 133444321 1121 23455788899999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhh-
Q 004968 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQ- 279 (721)
Q Consensus 201 A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~- 279 (721)
++|+.+| .+++.|++++|||+++ |.+-+|.++..++..+++++.||.. +|.+.+ |+-..
T Consensus 453 ~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~G-------------yGCIn~-LQm~~G 512 (617)
T COG3962 453 GLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRG-------------YGCINR-LQMATG 512 (617)
T ss_pred ccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCC-------------cchhhh-hhhhcC
Confidence 9998754 6789999999999998 9999999999999999999999985 344321 11111
Q ss_pred hchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCC
Q 004968 280 SSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGP 359 (721)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P 359 (721)
....+..+|+.... ..++.-+++..++++|.+...+ +++++|.++|+.+|+ +.++
T Consensus 513 g~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~~i~eL~aAL~~Ak~--~~~t 567 (617)
T COG3962 513 GASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---GTIEELEAALADAKA--SDRT 567 (617)
T ss_pred cchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---CCHHHHHHHHHHHHh--CCCC
Confidence 11122222322210 0122234466788999998766 799999999999998 6899
Q ss_pred EEEEEEEec
Q 004968 360 VLVHVVTEE 368 (721)
Q Consensus 360 ~lI~v~T~k 368 (721)
++|+++|..
T Consensus 568 tvi~I~t~P 576 (617)
T COG3962 568 TVIVIDTDP 576 (617)
T ss_pred EEEEEecCC
Confidence 999999964
No 160
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.85 E-value=1.1e-07 Score=115.85 Aligned_cols=252 Identities=16% Similarity=0.125 Sum_probs=162.9
Q ss_pred CcEeeccccHHHH---------HHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhh-cCCc---ceEEEEcCCCCcCCC
Q 004968 443 ERYFDVGMAEQHA---------VTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRL---PVRFVITSAGLVGSD 509 (721)
Q Consensus 443 ~R~~d~GIaE~~~---------v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a-~~~l---pVv~v~~~~G~~G~d 509 (721)
+-+|..|+.|.-+ +.++.|.+..|.+.+++.-.+.+.|+.|.++|... +... =|++++|..|....
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS- 163 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS- 163 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc-
Confidence 3789999999999 55666666778999999889999999999976642 3222 25555566665321
Q ss_pred CCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCcc----------c--ccCCCCCCc
Q 004968 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAIV----------R--TDLPGYRGI 574 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~~----------~--~~~p~~~~~ 574 (721)
.+-|+..-...+..| -|+.|+|++|+.++...+++. ..-||.++....... . ...|. ++
T Consensus 164 -q~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~--~f 237 (1186)
T PRK13029 164 -SVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD--DF 237 (1186)
T ss_pred -cCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc--cc
Confidence 233444433444444 599999999999999999874 355999876433210 0 00110 01
Q ss_pred ceecC--------------------------------ce-EEEE--eCCcEEEEEechhhHHHHHHHHHHHhCCCC----
Q 004968 575 PIEIG--------------------------------KG-KVLV--EGKDVALLGYGAMVQNCLKARALLSKLGID---- 615 (721)
Q Consensus 575 ~~~~g--------------------------------k~-~vl~--eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~---- 615 (721)
..+.+ +. ++.. ++.++-||+.|.....+++|.+.| |++
T Consensus 238 ~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~~ 314 (1186)
T PRK13029 238 VLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDATC 314 (1186)
T ss_pred cCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhhc
Confidence 00110 00 1111 236899999999999999887765 444
Q ss_pred ----eEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCC-------ccc-
Q 004968 616 ----VTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPD-------NYI- 683 (721)
Q Consensus 616 ----v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d-------~f~- 683 (721)
+.|+.+-+.||||.+.+++.++..+.|+||||... =+-..|.+.+.+.+. ..+...+|-.| .|.
T Consensus 315 ~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~ 390 (1186)
T PRK13029 315 AALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSV 390 (1186)
T ss_pred cccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCCeeEecccccccccccccc
Confidence 88999999999999999999999999999999752 244555555544332 22223455433 000
Q ss_pred cCCCHHHHHHH-cCCCHHHHHHHHHHHh
Q 004968 684 EHASPTQQLAL-AGLTGHHIAATALSLL 710 (721)
Q Consensus 684 ~~g~~~~l~~~-~gl~~~~I~~~i~~~l 710 (721)
+.|. .++.. -.|+++.|.+.+.+.+
T Consensus 391 ~~g~--~llp~~gEL~p~~va~~l~~~l 416 (1186)
T PRK13029 391 PAGR--WLLPAHAELSPALIAKAIARRL 416 (1186)
T ss_pred cccC--CCCCcccCcCHHHHHHHHHHHH
Confidence 1111 12222 2389999999987776
No 161
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.5e-07 Score=103.21 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=156.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh------------------HHHHHhCCC---cEeeccccHHHHHHHH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL------------------QLFQEKFPE---RYFDVGMAEQHAVTFS 459 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l------------------~~f~~~fp~---R~~d~GIaE~~~v~~A 459 (721)
..|..|=+-++-.++.+.-++-+-+.|++.||=- +.+... .. -+-|..++|.+..|+-
T Consensus 564 iDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~-qkg~LEvans~LSEEAvLGFE 642 (913)
T KOG0451|consen 564 IDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGG-QKGKLEVANSILSEEAVLGFE 642 (913)
T ss_pred cchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCC-cCCeeEeccccccHhhhhhhh
Confidence 4566666777788888889999999999877510 111100 12 2446789999999999
Q ss_pred HHHHhCC--CeeEEEe-cHhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc----
Q 004968 460 AGLACGG--LKPFCII-PSAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC---- 524 (721)
Q Consensus 460 aGlA~~G--~~p~~~t-ys~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~---- 524 (721)
.||+.+. ..++.+. |.+|..-| ||+-|.- +..--+++...+ |+-| -||-|+.+---.|+..
T Consensus 643 yGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~ 718 (913)
T KOG0451|consen 643 YGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSK 718 (913)
T ss_pred cccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhccc
Confidence 9999995 5566654 78876322 3332221 112234555555 5545 3788987654344432
Q ss_pred -------CCCcEEEeeCCHHHHHHHHHHHHH-hCCCCEEEEecCCCcccccCCCC--------CCcce--ecCceEEEEe
Q 004968 525 -------LPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGY--------RGIPI--EIGKGKVLVE 586 (721)
Q Consensus 525 -------iPnl~V~~Psd~~E~~~~l~~a~~-~~~~P~~ir~~r~~~~~~~~p~~--------~~~~~--~~gk~~vl~e 586 (721)
--||.|+-|.++.+...+++.-+. +-.+|.++.-|+.... +|.. +++.+ .+|.-.+-.+
T Consensus 719 E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~ 795 (913)
T KOG0451|consen 719 ETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPE 795 (913)
T ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChh
Confidence 136899999999999999986654 4477998877765421 2211 11111 1222110011
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC----eEEEEcCCC-CCChH
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT----FLITVEEGS-IGGFG 654 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~----~vvvvEe~~-~gG~g 654 (721)
.-+-+|++.|-......++.+.+..+. .+.++.+-.+-||+-+.+...+++++ .|..-||.. .|-|.
T Consensus 796 kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 796 KVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred HheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 125678899999888877777664433 37899999999999998877766653 566778876 46663
No 162
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.79 E-value=1.7e-08 Score=103.95 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=85.7
Q ss_pred EeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc
Q 004968 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (721)
Q Consensus 445 ~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~ 524 (721)
.+-..-+|..+++++.|+|++|.|.+++|.+..+..+.|.| ..++..++|+++++..++..+..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTT-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHH-
Confidence 66777999999999999999999999999999999999987 5668999999988854444454578999999976655
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCC
Q 004968 525 LPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGA 562 (721)
Q Consensus 525 iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~ 562 (721)
.-++.|++|+|++|+.++...|++.+ ..|++++.+...
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~ 156 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL 156 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence 56889999999999999999998754 459998876543
No 163
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.75 E-value=5.2e-07 Score=105.79 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=131.9
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEE---EecHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcC
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFC---IIPSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQC 514 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~---~tys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~ 514 (721)
.++|.+.+|.+++++=.|.+..--+.++ +-|.+|. |.-+||.+..-- .....+++...+ |.-| -||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gyEG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GYEG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CCCC-CCCcCc
Confidence 4679999999999999999998544333 3477775 677887643321 123345666665 4444 589999
Q ss_pred cHHHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHH-hCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEe----
Q 004968 515 GAFDITFMSC--LPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVE---- 586 (721)
Q Consensus 515 ~~~dia~~~~--iPnl~V~~Psd~~E~~~~l~~a~~-~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~e---- 586 (721)
..-.=.|+.. --||+|..|+++...+.+++.-+. ...+|.++..|+......... ..-..+.-++.+ ++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~-S~~~el~~~~F~~vl~d~~~~ 784 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAV-SSLEELTEGTFQPVLEDIDEL 784 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccC-Cchhhhchhhhhhhhcccccc
Confidence 7655455443 348999999999999999975443 346899998888764311000 000011111111 1111
Q ss_pred C--CcEEEEEechhhHHHHHHHHHHHhCC-CCeEEeecCccccccHHHHHHHhccC----CeEEEEcCCC-CCChH
Q 004968 587 G--KDVALLGYGAMVQNCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFG 654 (721)
Q Consensus 587 G--~dv~Iva~Gs~v~~al~Aa~~L~~~G-i~v~VId~~~l~PlD~e~i~~l~~~~----~~vvvvEe~~-~gG~g 654 (721)
+ -.-+++|.|-+.....+.. ++.| .++-++.+..|.||+.+.+.+.++++ ..+.+-||.. .|-|.
T Consensus 785 ~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 785 DPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred ccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 1 2446777787766555443 4444 47889999999999999998876554 4556667765 57776
No 164
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.60 E-value=6.6e-07 Score=97.80 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=83.2
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g 269 (721)
.|.||-|++.|++.|++ .+++.|||+-||++| |.+.=++.++.++++|+++||.||+. ....+
T Consensus 429 fgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~---------- 492 (571)
T KOG1185|consen 429 FGTMGVGLGFALAAALA----APDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNNGIYGLDD---------- 492 (571)
T ss_pred ccccccchhHHHHHHhh----CCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCCcccccCc----------
Confidence 36677766666666665 589999999999999 67777899999999999998886643 22111
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
..|.++++. .....-.+. .... +-....+.++||-+..-+ ..+++|..+++
T Consensus 493 ------------~~~~~I~e~---~~~~~~p~~-~l~~----------~~rY~~v~ka~G~kG~~v---~t~~el~~~l~ 543 (571)
T KOG1185|consen 493 ------------DGWKQISEQ---DPTLDLPPT-ALLA----------NTRYDKVAKAFGGKGYFV---STVEELLAALQ 543 (571)
T ss_pred ------------ccHHHHhhc---CcccCCCcc-cccc----------cccHHHHHHHcCCCceee---CCHHHHHHHHH
Confidence 111122100 000000000 0000 001133556777554323 58999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++... +++|++|.+...+..
T Consensus 544 ~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 544 QACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred HHHhc-CCCCeEEEEEecccc
Confidence 88764 569999999986654
No 165
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.55 E-value=3.5e-06 Score=94.94 Aligned_cols=239 Identities=15% Similarity=0.189 Sum_probs=155.0
Q ss_pred HHHHcCCCeEEEecCCCCccC------hH----------HHHHhCCC----cEeeccccHHHHHHHHHHHHhCC--CeeE
Q 004968 413 MEAEKDKDIVVVHAGMEMDLS------LQ----------LFQEKFPE----RYFDVGMAEQHAVTFSAGLACGG--LKPF 470 (721)
Q Consensus 413 ~~~~~d~~iv~i~ad~~~~~~------l~----------~f~~~fp~----R~~d~GIaE~~~v~~AaGlA~~G--~~p~ 470 (721)
.++++.-.|-+-+.|+..||= |. .+..-.|+ -+-|..++|-+.+|+-.|.+++- ..++
T Consensus 661 sLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVl 740 (1017)
T KOG0450|consen 661 SLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVL 740 (1017)
T ss_pred HHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEE
Confidence 345666677778888876641 10 11111233 46689999999999999999994 5556
Q ss_pred EEe-cHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc-------------------
Q 004968 471 CII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC------------------- 524 (721)
Q Consensus 471 ~~t-ys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~------------------- 524 (721)
.+. |.+|. |..+||.+..-- +.+.-+|+...| |+-| -||-|+..---.|+..
T Consensus 741 WEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql 818 (1017)
T KOG0450|consen 741 WEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQL 818 (1017)
T ss_pred eehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHHH
Confidence 654 88885 888999753311 234456766666 5545 4888985422122211
Q ss_pred -CCCcEEEeeCCHHHHHHHHHHHHHhC-CCCEEEEecCCCccccc----CCC-CCCcce-----ecCceEEEEeCCcEEE
Q 004968 525 -LPNMIVMAPSDEDELVDMVATVASID-DRPVCFRYPRGAIVRTD----LPG-YRGIPI-----EIGKGKVLVEGKDVAL 592 (721)
Q Consensus 525 -iPnl~V~~Psd~~E~~~~l~~a~~~~-~~P~~ir~~r~~~~~~~----~p~-~~~~~~-----~~gk~~vl~eG~dv~I 592 (721)
--||+|+.+++|.....+++.-+.+. .+|.+|+.|+....+.+ +.+ .++..+ +-||...-.++-+=+|
T Consensus 819 ~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv 898 (1017)
T KOG0450|consen 819 QDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLV 898 (1017)
T ss_pred hcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEE
Confidence 24799999999999999998776543 57999999987653211 100 001111 1122222223446678
Q ss_pred EEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC---CeEEEEcCCC-CCChH
Q 004968 593 LGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH---TFLITVEEGS-IGGFG 654 (721)
Q Consensus 593 va~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~---~~vvvvEe~~-~gG~g 654 (721)
+++|-.....-++.+.... --++.+..+-.|.||+.+++++-++++ +.+..-||+. .|.|.
T Consensus 899 ~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 899 FCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred EecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 9999988777666655431 236888999999999999998877665 4667779987 57664
No 166
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.42 E-value=2.3e-07 Score=102.15 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=49.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCC-EEEEEECCCC
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRH 254 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~p-livIv~dN~~ 254 (721)
-|++|+++++++|+|.|. ++++|+.++|||+++ ++.+++.++.+|++| .+|++||++|
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GY 472 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGY 472 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCce
Confidence 489999999999999995 479999999999998 888999999999955 5555555566
No 167
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.30 E-value=1.1e-06 Score=99.41 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=90.4
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+-.+|.||++|-|++++. .+++|++||||.|. .|+ .++.+|.+.+.|++++|.||..+.+..+|..+...+.
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~ 499 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVA 499 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccc
Confidence 345677888888888763 38999999999985 555 5799999999999999999998655444433221111
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+. |.+-.+ -.+ .++.+++|..++.++|-+|.+++.++++
T Consensus 500 ~~---------------------------g~~~~~--i~i------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~k 538 (640)
T COG4231 500 AE---------------------------GTKSTA--IVI------------EEVVRAMGVEDVETVDPYDVKELSEAIK 538 (640)
T ss_pred cC---------------------------CCccce--eEh------------hHhhhhcCceeeeccCCcchHHHHHHHH
Confidence 11 100000 000 3456778999998999999999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++++. .+|.+|..+-
T Consensus 539 eale~--~gpsViiak~ 553 (640)
T COG4231 539 EALEV--PGPSVIIAKR 553 (640)
T ss_pred HHhcC--CCceEEEEcC
Confidence 99994 7899987653
No 168
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.14 E-value=1.3e-05 Score=83.91 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=91.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
+|++|+.||+|+|.-.| .+++.||++.||-.|+ ...|+|...+++|+|.|-|+-||.| .|-
T Consensus 418 agplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnay-------------lgl 478 (592)
T COG3960 418 AGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAY-------------LGL 478 (592)
T ss_pred cCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchH-------------HHH
Confidence 69999999999999776 5799999999999997 7889999999999999999999998 332
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc---cCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM---IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
+ +.-+|- | .+-- .+.-.+++....- .+-+...+.|++|++.+++ .+++++..+
T Consensus 479 i-rqaqr~-----f--------~mdy-------~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~a 534 (592)
T COG3960 479 I-RQAQRA-----F--------DMDY-------CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPA 534 (592)
T ss_pred H-HHHHhc-----C--------Cccc-------eeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhHH
Confidence 2 100100 0 0000 0000000000000 0112356789999999988 577888888
Q ss_pred HHHHHhc--CCCCCEEEEEEEec
Q 004968 348 LQEVASL--GSMGPVLVHVVTEE 368 (721)
Q Consensus 348 l~~a~~~--~~~~P~lI~v~T~k 368 (721)
|++++.. +..-|+++++.-++
T Consensus 535 f~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 535 FEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHHhcCCCeeeehHHHH
Confidence 8877542 23569999886544
No 169
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.06 E-value=1.2e-05 Score=85.66 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhh
Q 004968 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSS 273 (721)
Q Consensus 194 ~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~ 273 (721)
-|-+++.|.|+.+|.+ +..||++-|||..- +.-...+..+...+.++++||.||+..++...+.|++.+.|+..+
T Consensus 72 ~gra~a~atGik~A~~----~l~Viv~gGDG~~~-dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~ 146 (294)
T COG1013 72 HGRAAAVATGIKLANP----ALSVIVIGGDGDAY-DIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTK 146 (294)
T ss_pred cCcchhhHHHHHHhcc----CCeEEEEecchhHh-hhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceee
Confidence 3567889999999865 67999999999543 355678999999999999999999987888888888888886643
Q ss_pred hhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh
Q 004968 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (721)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~ 353 (721)
+... |+... .+ -+...++-+.|..|+..+---++.++.+.+++|.+
T Consensus 147 t~p~---------------------Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~ 192 (294)
T COG1013 147 TTPY---------------------GKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE 192 (294)
T ss_pred ecCC---------------------CCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh
Confidence 2211 11000 00 01133455677777655443458889898888887
Q ss_pred cCCCCCEEEEEEEe
Q 004968 354 LGSMGPVLVHVVTE 367 (721)
Q Consensus 354 ~~~~~P~lI~v~T~ 367 (721)
.+||.+||+.+-
T Consensus 193 --~~Gps~I~v~sP 204 (294)
T COG1013 193 --HKGPSFIDVLSP 204 (294)
T ss_pred --ccCCeEEEEecC
Confidence 479999999874
No 170
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.79 E-value=0.00074 Score=65.66 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCC-CeEEEecCCCCccChHHHHH---h------------C---CCcEeeccccHHHHHHHHHHHHhC
Q 004968 405 DCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQE---K------------F---PERYFDVGMAEQHAVTFSAGLACG 465 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~---~------------f---p~R~~d~GIaE~~~v~~AaGlA~~ 465 (721)
.++++.|.++++.+| ++-++++|-..|..|....+ + + +++-+..-++|+.+.|+..|+.++
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888776 58899999888877743221 1 1 234444459999999999999999
Q ss_pred CCeeEEEecHhhH---HHHHHHHHHHhh---c----CCcc-eEEEEcCCCC-cCCCCCCcCcHHHH-HHHccCCC-cEEE
Q 004968 466 GLKPFCIIPSAFL---QRAYDQVVNDVD---Q----QRLP-VRFVITSAGL-VGSDGPTQCGAFDI-TFMSCLPN-MIVM 531 (721)
Q Consensus 466 G~~p~~~tys~Fl---~ra~dqi~~~~a---~----~~lp-Vv~v~~~~G~-~G~dG~TH~~~~di-a~~~~iPn-l~V~ 531 (721)
|..-++++|-.|+ .-++.|-...+- . ...| +.++.+.-.. -+.+|-|||...=+ .++...|+ +.||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999998886 334444322111 1 1233 3333343333 47899999944333 34444455 5899
Q ss_pred eeCCHHHHHHHHHHHHH
Q 004968 532 APSDEDELVDMVATVAS 548 (721)
Q Consensus 532 ~Psd~~E~~~~l~~a~~ 548 (721)
.|.|++-+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999998875
No 171
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.00044 Score=78.14 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=52.8
Q ss_pred eeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 324 LFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 324 l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
.||++||+.. .|||||+++|.++|.+++.. .++|++|.+.|.+|+|.+..+ +..|||.+
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig----~~~~Hg~p 258 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG----SESVHGAP 258 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc----cccccCCc
Confidence 6899999998 89999999999999999865 578999999999999988765 68999974
No 172
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.73 E-value=0.00018 Score=80.98 Aligned_cols=212 Identities=19% Similarity=0.260 Sum_probs=115.7
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
++.|.-+...++-..+++..+.+..|..+.+... +| ++....+...|-... +|+|.++....-- -
T Consensus 336 ~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~---~~---~~~e~~~a~~l~~~l-p~~~~LFvgNSmp---V----- 400 (566)
T COG1165 336 ARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLA---AE---ALTEAHLAAALADLL-PPQDQLFVGNSMP---V----- 400 (566)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHHHHhc---cc---CchhhHHHHHHHHhC-CCCCeEEEecCch---h-----
Confidence 4445544444555677777777888877766654 22 222222222222211 5688887743310 0
Q ss_pred chhhhHHHHhh-CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 162 RRSLIHTLRKK-DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 162 r~~~~~~~r~~-ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
|. +..+-+. .+..-|.+| |+...-..+|-|+|++.|. ..++|+++||=++-.-++ +|-....
T Consensus 401 Rd--vd~~~~~~~~~~v~sNR--------GA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~ 463 (566)
T COG1165 401 RD--VDALGQLPAGYRVYSNR--------GASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKK 463 (566)
T ss_pred hh--HHHhccCccCceeecCC--------CccccchhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCC
Confidence 10 1111111 223333344 2222223578899999874 567999999999854333 4555666
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
...|++|||.||+. |++-.+|..-.....+. ..+ |.+- .-+
T Consensus 464 ~~~~ltIvv~NNnG--------------GgIF~~Lp~~~~~~~fe----~~F------~tPh---------------~ld 504 (566)
T COG1165 464 VPQPLTIVVVNNNG--------------GGIFSLLPQAQSEPVFE----RLF------GTPH---------------GLD 504 (566)
T ss_pred CCCCeEEEEEeCCC--------------ceeeeeccCCCCcchHH----Hhc------CCCC---------------CCC
Confidence 66888777766653 11211121111111011 100 1100 013
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
++.+++.||+.|..+ ++++++.++++..-. ..+-++||++|.+-
T Consensus 505 F~~la~~y~l~y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~ 548 (566)
T COG1165 505 FAHLAATYGLEYHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRS 548 (566)
T ss_pred HHHHHHHhCcccccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChh
Confidence 355677889999877 899999999988765 36789999999764
No 173
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.70 E-value=0.0015 Score=63.23 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC--CCCcCcHHHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD--GPTQCGAFDI 519 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d--G~TH~~~~di 519 (721)
.-|++.+- .|+.++.+|.|.+..|.+.++.+..+.+..+.+.+.+. ...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 35888886 99999999999999998855567889998999988544 45689999987554443222 1223333333
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEec
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYP 559 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~ 559 (721)
.+++ |-.-++.+.+++|+..++..|+.. ..+|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3332 345678899999999999888863 2479998764
No 174
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.43 E-value=0.0011 Score=72.89 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=88.0
Q ss_pred HHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHH--hhcCCcceEEEEcCCCCcC-CCCCC
Q 004968 438 QEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVND--VDQQRLPVRFVITSAGLVG-SDGPT 512 (721)
Q Consensus 438 ~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~--~a~~~lpVv~v~~~~G~~G-~dG~T 512 (721)
.+..|+ |++-+ -.|..+|++|+|+.++ |.+|++.+-.+.+..+...+... ....++|+++++..+|-.| .|=|+
T Consensus 21 ~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depq 99 (361)
T TIGR03297 21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQ 99 (361)
T ss_pred HhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCch
Confidence 335544 66655 6799999999999999 99999999888888788877444 2346999999999999876 66788
Q ss_pred cC--cHHHHHHHccCCCcEEEe-eCCHHHHHHHHHHHHH---hCCCCEEEEecCCCcc
Q 004968 513 QC--GAFDITFMSCLPNMIVMA-PSDEDELVDMVATVAS---IDDRPVCFRYPRGAIV 564 (721)
Q Consensus 513 H~--~~~dia~~~~iPnl~V~~-Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~~~ 564 (721)
|. +.--..++..+ ++.... |.+..|....+..|++ ..++|+.+.++++...
T Consensus 100 h~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~ 156 (361)
T TIGR03297 100 HVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFA 156 (361)
T ss_pred hhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 84 44333444432 333333 4566666555555543 3578999999887653
No 175
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.39 E-value=0.00035 Score=75.92 Aligned_cols=116 Identities=14% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhh
Q 004968 214 RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKG 293 (721)
Q Consensus 214 ~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~ 293 (721)
+..||++-|||..- .+-+.++.+|...+.|+++||.||...+....+.|.++|.|+..++-.
T Consensus 151 ~~~v~v~gGDG~~y-dIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp----------------- 212 (365)
T cd03377 151 KKSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAA----------------- 212 (365)
T ss_pred ccceEEEecchhhh-ccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCC-----------------
Confidence 36899999999653 355678999999999999999999977776667778888887643211
Q ss_pred hhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccC-CCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 294 MTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
.|..... + +...++-++|..|+..+- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 213 ----~Gk~~~k---------k-----d~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 213 ----AGKRTGK---------K-----DLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ----CCCCCCC---------c-----CHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 1111000 0 112344456767765543 3589999999999988 489999999874
No 176
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.34 E-value=0.0018 Score=62.37 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
-|++.+ ..|..++.+|.|.+..+.| +++. ++.+.+..++..+ ..+...++|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 367765 7999999999999999654 4443 4678888888877 4556779999999866555333333466555666
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEec
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYP 559 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~ 559 (721)
+++.+-.+ .+...+++|+...+..|++.. .+|++|.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77777655 677789999999999888753 469998775
No 177
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.90 E-value=0.0022 Score=79.30 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=52.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCc
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~ 260 (721)
+.-+||.+++.++|++.+ .++++||+++|||.+. .|+ -++.+|.+.+.|++++|.+|..+.+..+
T Consensus 479 ~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred eeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 345788888899998876 3357899999999975 555 4899999999999999999998655443
No 178
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.87 E-value=0.0019 Score=80.08 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=52.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCc
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~ 260 (721)
.-+||.+++.++|++.+. .+++||+++|||.+. .|+. +|.+|.+.+.|++++|.||..+.+..+
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 347888888999998772 357899999999975 6665 999999999999999999998655433
No 179
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.63 E-value=0.024 Score=55.77 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=84.5
Q ss_pred HHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee-EEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcC-CCCC
Q 004968 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP-FCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGP 511 (721)
Q Consensus 435 ~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~ 511 (721)
+.+.+...=|++.+ -.|++++.+|.|.+..+-+| ++.+ +.+.+..++..+ ..+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGL-ANAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHH-HHHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHH-hhcccceeeEEEEecccchhhhcccc
Confidence 34444333578875 99999999999999875554 4443 555555555554 245667999999886555532 2467
Q ss_pred CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 512 TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.|+......+++.+-.+ .+.+.+++++...++.|+.. ..+|++|.+|...
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 77666667788877655 56677777777777777653 4789999988754
No 180
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.48 E-value=0.037 Score=53.81 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=71.5
Q ss_pred cccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhh-cCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccC
Q 004968 449 GMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCL 525 (721)
Q Consensus 449 GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a-~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~i 525 (721)
.-+|..++++|+|.++.|.+|.+.+-.+.+..+...+ ..+. ..+.||+++....|-.|.+-+.|.+ ...-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 5789999999999999999998887655555666665 3445 6799999998666654433222221 1111122221
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004968 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRG 561 (721)
Q Consensus 526 Pnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~ 561 (721)
++......+++|+ ..+..|++ ..++|++|..++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2235555667787 77777764 2458999988764
No 181
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.29 E-value=0.0089 Score=74.00 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCC
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t 259 (721)
-+||.+++.++|++-+ .++++||+++|||.+. .|+ -+|.+|.+.+.|++++|.||..+.+..
T Consensus 495 ~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTG 557 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTG 557 (1186)
T ss_pred eccCcchhhheeeccc----CCCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccC
Confidence 5688888888888866 2357899999999975 555 489999999999999999999864433
No 182
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.10 E-value=0.009 Score=75.11 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhh
Q 004968 215 ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGM 294 (721)
Q Consensus 215 ~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~ 294 (721)
..||++-|||... ++-+.++.++...+.|+.+||.||...+....+.|.++|.|+..++-.
T Consensus 952 ~sv~~~~GDG~~~-diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~------------------ 1012 (1165)
T TIGR02176 952 KSVWIIGGDGWAY-DIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAA------------------ 1012 (1165)
T ss_pred ceeEEEecchhhh-ccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCC------------------
Confidence 4799999999653 355678999999999999999999976666666778888887643211
Q ss_pred hhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccC-CCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 295 TKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 295 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
.|.... -+ +...++.++|..|+..+- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 1013 ---~g~~~~---------kk-----d~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1013 ---AGKRTS---------KK-----DLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ---CCCCCC---------Cc-----CHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 011000 00 112345567777776654 5689999999999988 489999999874
No 183
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=95.43 E-value=0.028 Score=52.56 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcH--HHHHHHccCCC
Q 004968 450 MAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA--FDITFMSCLPN 527 (721)
Q Consensus 450 IaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~--~dia~~~~iPn 527 (721)
-+|...+|++||+.++|.+|..-+-.+.+-.....+-..-...++|..+++.|+|..+++=+.+-+. .--.++.. -+
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~-~~ 127 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG-LE 127 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh-cC
Confidence 4788999999999999999999887777766555443333356899999999999866544443321 11112332 25
Q ss_pred cEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004968 528 MIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (721)
Q Consensus 528 l~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r 560 (721)
+..+.|-.++|...++..+.. ...+|+.+.++-
T Consensus 128 lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 128 LPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 567899999997776655543 367899887753
No 184
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.22 E-value=0.97 Score=44.17 Aligned_cols=115 Identities=9% Similarity=-0.031 Sum_probs=78.8
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++. .-.|+++..+|.|.|..--+|-++ ++.+.+..++--+ ..+...+.||+++..........-..+|......+
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 6665 489999999999999984344333 4777777776655 35567899999987433221111124676666677
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRG 561 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~ 561 (721)
++.+-.+ ...+.++.++...++.|++. ..+|++|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 8877665 45667888888888877753 458999988764
No 185
>PRK07586 hypothetical protein; Validated
Probab=94.87 E-value=3.2 Score=48.08 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=113.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ --|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++..........-..+|......+
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 118 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEAL 118 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhh
Confidence 77776 8999999999999987 5444443 5888877777655 35567899999886432221111122444444456
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCcccc-cCCCCCCc-c---ee----cCc-eEEEEe-
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAIVRT-DLPGYRGI-P---IE----IGK-GKVLVE- 586 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~~~~-~~p~~~~~-~---~~----~gk-~~vl~e- 586 (721)
++.+-.+ .....++.++..+++.|+.. ..+|++|-+|....... +.+..... . .+ +.+ .+.+.+
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~A 197 (514)
T PRK07586 119 ARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALRSG 197 (514)
T ss_pred hccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 6655333 35567777777777777653 35799999998653211 11100000 0 00 000 012222
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHh-CCCCeEE--e-----ecCcccc-----ccHHHHHHHhccCCeEEEEcC
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSK-LGIDVTV--A-----DARFCKP-----LDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~V--I-----d~~~l~P-----lD~e~i~~l~~~~~~vvvvEe 647 (721)
.+-+.|++.|.....+.++...|.+ .|+.+-. . .-+.+-| .-.....+.+++.+.|+++--
T Consensus 198 ~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 198 EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 3467777777765556666665544 4776522 1 0122222 112333456677788887753
No 186
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.85 E-value=0.17 Score=49.71 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=68.2
Q ss_pred HhCCCcEeeccc--cHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcC-CCCcCCCCCC
Q 004968 439 EKFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITS-AGLVGSDGPT 512 (721)
Q Consensus 439 ~~fp~R~~d~GI--aE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~-~G~~G~dG~T 512 (721)
-..|.+++..|. +=-.++.+|.|++++. -++++++. ..|+.- ...+ ..++..++|+++++-. .|. |.....
T Consensus 35 ~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el-~ta~~~~lpv~ivv~NN~~~-~~~~~~ 111 (172)
T cd02004 35 PRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMEL-ETAVRYNLPIVVVVGNNGGW-YQGLDG 111 (172)
T ss_pred ccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHH-HHHHHcCCCEEEEEEECccc-ccchhh
Confidence 355788887653 2333666777888875 36777764 455432 2333 4567789997777733 332 211100
Q ss_pred cC-------------cHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 QC-------------GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 H~-------------~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+. ...|.. +.+. -|+..+.-.+.+|+...++.++. .++|++|-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 112 QQLSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00 112222 2232 25667777899999999999976 578988754
No 187
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.48 E-value=0.24 Score=48.48 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.||-|.|..--+|-+. ++.+.+..++--+ ..+...+.||+++.........+-.++|......+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 66665 89999999999999984444443 4778877777655 45567899999987543332222234676666677
Q ss_pred HccCCCcEEEeeCCHHH------HHHHHHHHHHh----CCCCEEEEec
Q 004968 522 MSCLPNMIVMAPSDEDE------LVDMVATVASI----DDRPVCFRYP 559 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E------~~~~l~~a~~~----~~~P~~ir~~ 559 (721)
++.+-.+ .....++++ +..+++.|+.. ..+|++|-+|
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7765443 233344444 55556655542 3468888654
No 188
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.48 E-value=1.1 Score=52.93 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-| ..+...+.||+++....+........+|......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 67775 8999999999999976 655555 35788877777665 45567899999987443332111234676666677
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI 563 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~ 563 (721)
++.+-.+ .....++.++...+..|++. ..+|++|-+|+...
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 7765443 34456777777777766652 34799999998653
No 189
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=94.42 E-value=0.44 Score=46.27 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCCCccChHHH-HHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHHH
Q 004968 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF-QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRAY 482 (721)
Q Consensus 406 ~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f-~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~ 482 (721)
.+.+.|.+.+ . ..+++. |.+. +...-+ ....|.+|+..|-- ...+..|.|++++--+|++++. ..|+.-.-
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~-~~~~~~~~~~~~~~~~~~gsm-G~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~ 76 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGY-ASRELYDVQDRDGHFYMLGSM-GLAGSIGLGLALGLSRKVIVVDGDGSLLMNPG 76 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCH-hHHHHHHhhcCCCCEEeecch-hhHHHHHHHHHhcCCCcEEEEECchHHHhccc
Confidence 4455565555 3 334433 3332 222222 23557888863321 1123367777765447888875 55653332
Q ss_pred HHHHHHhhcC-CcceEEEE-cCCCCcCCCC--CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 483 DQVVNDVDQQ-RLPVRFVI-TSAGLVGSDG--PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 483 dqi~~~~a~~-~lpVv~v~-~~~G~~G~dG--~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ + .-+... ++|+++++ ...++ |.-+ +++....|++-++.--|+.-+...+++|+...++.+++ .++|++|..
T Consensus 77 e-l-~t~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 77 V-L-LTAGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H-H-HHHHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 2 233444 58987777 44443 3212 22222223333333335556677899999999999986 688998754
No 190
>PRK12474 hypothetical protein; Provisional
Probab=93.98 E-value=5.3 Score=46.37 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ --|++++.+|-|.|.. |...+|. ++.+....++--+ ..+-..+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 78876 8999999999999987 6444444 5888877666655 34556799999886432221111123454555567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCcccc-cCC--CCCCcce--e----cCc-eEEEEeC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAIVRT-DLP--GYRGIPI--E----IGK-GKVLVEG 587 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~~~~-~~p--~~~~~~~--~----~gk-~~vl~eG 587 (721)
++.+-.+ .....++.++..+++.|+.. ..+|++|-+|+...... +.+ ....... + +.+ .+.|.+-
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A 201 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYAAQPLRGIGPAPVAAETVERIAALLRNG 201 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCCcCCCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 7765443 35568889888888888752 34799999998753211 100 0000000 0 000 1123333
Q ss_pred -CcEEEEEechhhHHHHHHHHHHH-hCCCCeEE--ee-----cCccc-----cccHHHHHHHhccCCeEEEEcC
Q 004968 588 -KDVALLGYGAMVQNCLKARALLS-KLGIDVTV--AD-----ARFCK-----PLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 588 -~dv~Iva~Gs~v~~al~Aa~~L~-~~Gi~v~V--Id-----~~~l~-----PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+-+.|++.|..-..+.+++..|. +.|+.|-. .. -+.+- |+......+++++.+.|+++--
T Consensus 202 ~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~ 275 (518)
T PRK12474 202 KKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGA 275 (518)
T ss_pred CCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECC
Confidence 34555555554444555555554 45777521 11 12222 3333344456677788877663
No 191
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.85 E-value=1.3 Score=51.75 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=81.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++..........-..||......+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 77776 6999999999999986 544444 45888877777665 45567899999987533331111234888777788
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+ .....++.++...+..|++. ..+|++|.+|...
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 8876554 34457788888777777653 2479999998764
No 192
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.60 E-value=0.82 Score=44.59 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=73.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCc-----C
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQ-----C 514 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH-----~ 514 (721)
|++. .-.|++++.+|.|.+..- +|-++ +..+.+..++..+ ..+...+.||+++...... .+.....| +
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 5555 489999999999999986 44443 3677777777766 3556779999998743222 12212223 2
Q ss_pred cHH-HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecC
Q 004968 515 GAF-DITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR 560 (721)
Q Consensus 515 ~~~-dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r 560 (721)
... ...+++.+-.+ .....++.++..+++.|+.. ..+|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 222 35677765444 34446777877777777753 35799998775
No 193
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.21 E-value=1.6 Score=51.41 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++..........-..+|......
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 367765 8999999999999987 4434443 4788887777665 4556789999998743333111112366666666
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....++.++..++..|+.. ..+|++|.+|...
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77776554 35556788888888777753 2589999999874
No 194
>PRK08611 pyruvate oxidase; Provisional
Probab=93.18 E-value=2 Score=50.65 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=78.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++. ...|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 7776 48899999999999976 5443433 4788877777665 45567899999987544332111123555555567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
++.+--+ .....+++++..++..|+.. ..+|++|-+|...
T Consensus 123 ~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 123 FEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred hhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 7866544 34566777877777776542 3689999998764
No 195
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.18 E-value=1.6 Score=51.25 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAF 517 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~ 517 (721)
+=+++.+ .-|++++.+|.|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .+.+ .+|...
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d 128 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEAD 128 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccc
Confidence 4588866 9999999999999987 5444443 4777776666655 4556779999988643332 2322 244455
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 518 dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
...+++.+-.+ .+...++.++..+++.|+... .+|++|-+|...
T Consensus 129 ~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 129 IMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred hhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 56677766555 345567778877887777642 589999998753
No 196
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.11 E-value=2.2 Score=50.08 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=81.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|.....++
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 77765 8999999999999976 5444444 5888877777665 45567899999987443331111123666655567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
++.+-.+ .....+++++..+++.|++.. .+|++|-+|...
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 7765444 355688999999998888642 369999998764
No 197
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.11 E-value=2.2 Score=50.24 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=81.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .+. ..+|.....
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCC--CCCceecHH
Confidence 67764 8899999999999986 7666655 4888877777655 4556679999998754333 232 235555555
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCc
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAI 563 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~ 563 (721)
.+++.+-.+ .....+++++..+++.|+.. ..+|++|.+|....
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 677765443 34556888988888888763 35899999988653
No 198
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.08 E-value=2.2 Score=49.98 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=80.0
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 77776 8999999999999976 544444 35778877777665 45567899999987433321111223565555667
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+. ....+++++..++..|+.. ..+|++|-+|...
T Consensus 119 ~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 119 TMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred hcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 77665543 4446788888888888763 2579999998764
No 199
>PRK05858 hypothetical protein; Provisional
Probab=93.04 E-value=2.3 Score=49.61 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=81.0
Q ss_pred CCcEeeccccHHHHHHHHHHHHhCCCeeEE-E-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFC-I-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDI 519 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~-~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~di 519 (721)
.=|++.+ -.|++++.+|.|.|...-+|-+ . ++.+.+..++--| ..+...+.||+++.......-.+...+|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3478876 8999999999999998444433 3 4677777777655 466778999998864333211112346666566
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .....++.++...+..|+.. ..+|++|-+|+..
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 677766554 45557788888888777753 3579999998764
No 200
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.02 E-value=1.7 Score=51.05 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=79.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++. ...|++++.+|.|.|..--+| +|. ++.+.+..++.-| ..+...+.||+++.........+-..+|.....+
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 37888 499999999999999984455 333 5788877777666 4567789999998743332111112355554455
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+. ..-.+++++..++..|++. ..+|++|-+|...
T Consensus 130 ~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 130 ISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred hhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 666655443 3345788888888877763 2589999998764
No 201
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.95 E-value=2.1 Score=50.30 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=79.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 125 (566)
T PRK07282 50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI-ADAMSDSVPLLVFTGQVARAGIGKD--AFQEADIV 125 (566)
T ss_pred eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecccccccCCCC--CccccChh
Confidence 88876 8999999999999987 6454444 5888877777665 4555679999998744333 2322 35555555
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. ....++.++..++..|+.. ..+|++|-+|...
T Consensus 126 ~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 126 GITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred chhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 6677655543 3446788888888877764 2589999998864
No 202
>PRK08266 hypothetical protein; Provisional
Probab=92.90 E-value=2.4 Score=49.51 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=79.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAF 517 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~ 517 (721)
=|++.+ ..|++++.+|.|.|...-+| +| .++.+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 477776 89999999999999874344 43 35788877777665 4667789999988743222 1322 23444345
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 518 dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
...+++.+-.+ .....+++++..+++.|++. ..+|++|-+|...
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 56778866554 35556677777777777653 3579999998754
No 203
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.84 E-value=1.3 Score=43.62 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=71.4
Q ss_pred HHHHhCCCcEeeccc-cHH-HHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC--
Q 004968 436 LFQEKFPERYFDVGM-AEQ-HAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS-- 508 (721)
Q Consensus 436 ~f~~~fp~R~~d~GI-aE~-~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~-- 508 (721)
.+.-..|.+++..+. .=. .+++.|.|++++. -++++++ -..|+.-..+ + ..+...++|+++++-.-|..|.
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCchhHHH
Confidence 344455778887543 222 2555667777654 3566665 4667655444 3 3466789998887744432221
Q ss_pred ------CCC-Cc--CcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ------DGP-TQ--CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ------dG~-TH--~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.++ .+ ....|+.-+..--|+..+...++.|+...++.+++ .++|++|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011 11 11123332333237778888999999999999976 579998855
No 204
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=92.83 E-value=1.7 Score=46.47 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccH---HHHHHHHHHHHhCC-CeeEEEec--Hhh
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAE---QHAVTFSAGLACGG-LKPFCIIP--SAF 477 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE---~~~v~~AaGlA~~G-~~p~~~ty--s~F 477 (721)
..++.++|.++.-..++.+++ .|++... +.| +|++..--- -.++.+|.|++++. -++++++. .+|
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 456667776654333455444 4666443 234 566543321 34666888888774 46777764 556
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CCc----------C-------cHHHHHHHccCCCcEEEeeCCH
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PTQ----------C-------GAFDITFMSCLPNMIVMAPSDE 536 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~TH----------~-------~~~dia~~~~iPnl~V~~Psd~ 536 (721)
+.-...-+. .++..++|+++++-.-+..|.-+ ++- . ...-+++.....-.-.....++
T Consensus 84 ~~mg~~eL~-tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHFV-AAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHHH-HHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 544454443 45677999888773332222111 110 0 1111222222221222336999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe
Q 004968 537 DELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 537 ~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+|+..+++.|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999986 688998754
No 205
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.81 E-value=2.5 Score=49.15 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=77.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcC-CCCCCcCcHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDI 519 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~TH~~~~di 519 (721)
=||+. .-.|++++.+|.|.|...-+|-++ +..+.+..++.-| ..+...+.||+++........ ..++.+|.....
T Consensus 49 i~~i~-~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~ 126 (530)
T PRK07092 49 FRYVL-GLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAA 126 (530)
T ss_pred CCEEE-EccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHH
Confidence 37775 489999999999999974344443 3566666666655 455678999998865433311 123333333335
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
.+++.+-.+... ..+++++..++..|+... .+|++|-+|...
T Consensus 127 ~l~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 127 ELPKPYVKWSIE-PARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred Hhhcccccceee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 678877665443 477888888888877632 469999998654
No 206
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.78 E-value=0.87 Score=53.75 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=80.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++..........-..+|......
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 367765 8999999999999987 6555554 4777777777655 4555779999998743332111112467666667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCCc
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGAI 563 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~~ 563 (721)
+++.+-.+ .+...++.++...+..|+. ...+|++|-+|+...
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 77765443 4556778887777777764 245799999997653
No 207
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.76 E-value=1.5 Score=43.35 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=68.6
Q ss_pred hCCCcEeeccc--cHHHHHHHHHHHHhC-CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC-----
Q 004968 440 KFPERYFDVGM--AEQHAVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD----- 509 (721)
Q Consensus 440 ~fp~R~~d~GI--aE~~~v~~AaGlA~~-G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d----- 509 (721)
..|.||+..+- +=-..+..|.|++++ .-++++++. ..|+.-.-+ + ..+...++|+++++-.-+..|.-
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e-L-~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE-L-ETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH-H-HHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45789887543 223345577777765 456777764 566544322 2 34566789988886333222210
Q ss_pred ---CC-CcC--cHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 510 ---GP-TQC--GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 510 ---G~-TH~--~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+. .+. ...|..-++.--|+.-+.-.+++|+...++++++ .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00 010 1123332222226667788999999999999986 6899988654
No 208
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.74 E-value=2.7 Score=49.19 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=86.9
Q ss_pred HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCC
Q 004968 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDG 510 (721)
Q Consensus 435 ~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG 510 (721)
+.|.+. .=|++-+ --||.++.+|.|.|.. |..-+|. |..+....++.-| .++-+-..|++++...... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 444444 4588876 8999999999999997 6655554 4778877777665 5666779999988743222 232
Q ss_pred CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCc
Q 004968 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAI 563 (721)
Q Consensus 511 ~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~ 563 (721)
-.+|......+++.+-.+ .+...+++|+-..++.|++. ..+|++|-+|+...
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 346666555676654433 47778889999999988874 23699999988653
No 209
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.74 E-value=1.4 Score=46.94 Aligned_cols=148 Identities=9% Similarity=0.102 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHH
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQ 479 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ 479 (721)
...++.++|.++....++.+++ .|.+.++.+..+ +.-..+.... ..++.+|.|++++. -++++++. ++++.
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~---~~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSSNLPEF---LNTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhh---ccCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 3456666665543333454444 466544322222 1112233322 55677888887773 46677764 44455
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CC----------cC-------cHHHHHHHccCCCcEEEeeCCHHH
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PT----------QC-------GAFDITFMSCLPNMIVMAPSDEDE 538 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~T----------H~-------~~~dia~~~~iPnl~V~~Psd~~E 538 (721)
-++..+.+ ++..++|+++++-.-+..|.-| ++ -. ....++.....+.+....+.++.|
T Consensus 92 ig~~eL~t-A~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGHLPH-AARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHHHHH-HHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 66666644 5778899888774333322211 11 00 122333333344455566699999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004968 539 LVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~ 558 (721)
+...++.|++ .++|++|-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 689998854
No 210
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.64 E-value=2 Score=44.68 Aligned_cols=90 Identities=10% Similarity=0.150 Sum_probs=55.0
Q ss_pred CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCc-----------------------HHHHH-
Q 004968 467 LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCG-----------------------AFDIT- 520 (721)
Q Consensus 467 ~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~-----------------------~~dia- 520 (721)
-+|++++- ..|++..+..+. .++..++|+++++-.-+..|.-|.+++. ..|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57888874 555556666664 5678899998888444433321111111 01222
Q ss_pred HHccC--CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 521 FMSCL--PNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 521 ~~~~i--Pnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+.+.+ +++..+...+++|+...++.+++ .++|++|-.
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22222 23334568999999999999987 688988744
No 211
>PRK07064 hypothetical protein; Provisional
Probab=92.57 E-value=2.9 Score=48.75 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=79.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (721)
|++.+ ..|++++.+|.|.|.. |...+| .++.+.+..++..| ..+...+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 77765 8999999999999987 544444 35788777777665 4556789999988743221 2322 234554455
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|...
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 6777766554 34456778877777777653 3689999998754
No 212
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.42 E-value=0.92 Score=45.09 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred hCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC------
Q 004968 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS------ 508 (721)
Q Consensus 440 ~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~------ 508 (721)
..|.+|+..+- . =-..+..|.|++++. -++++++. ..|+.-.-+ + ..++..++|+++++-.-+..+.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e-L-~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE-L-ATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH-H-HHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 45788887543 2 223566777877764 35666654 566644333 3 3456778998877743332110
Q ss_pred ------CCCCc-CcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ------DGPTQ-CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ------dG~TH-~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
...++ ....|.+ +.+.+ |+.-+.-.+..|+...++.+++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00111 1112322 33333 5666777889999999999976 688998855
No 213
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.37 E-value=2.5 Score=49.58 Aligned_cols=115 Identities=11% Similarity=0.049 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEE-E-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFC-I-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~-~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|...-+|-+ . ++.+.+..++--| ..+-..+.||+++...... .+. ..+|....
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRER--EAFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CcccccCH
Confidence 367765 8899999999999998544433 3 4788887777665 4556789999988743332 232 23565666
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+. ....++.++..++..|++. ..+|++|.+|...
T Consensus 123 ~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 123 RRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred HHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 67777665543 3446788888888777753 3579999999764
No 214
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.33 E-value=3.8 Score=48.36 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 378876 8999999999999987 5444444 4788887777665 4666789999998744333 1322 3555545
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .....+++++..++..|++. ..+|++|-+|...
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 5667766544 34456777777777777653 2579999999874
No 215
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.30 E-value=3.3 Score=49.20 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=80.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=+++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++--| ..+...+.||+++.............+|......
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 377775 8999999999999987 655444 34778777777655 4666789999998744333111112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|...
T Consensus 148 l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 148 ITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred hhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 77765443 34557888988888888763 2579999998764
No 216
>PRK07524 hypothetical protein; Provisional
Probab=92.28 E-value=3.4 Score=48.11 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (721)
|++.+ -.|++++.+|-|.|.. |...+| .++.+.+..++--| ..+...+.||+++...... .+.+ +..|+....
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 77775 8999999999999987 544344 35788877777665 4666789999988743332 2322 344553445
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+--+ .+...+++++...+..|+.. ..+|++|-+|+..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 119 RAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred HHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 5677765433 46667888888888877753 3579999999764
No 217
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.26 E-value=3.1 Score=49.23 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ --|++++.+|-|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .|. .++|....
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 125 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDT 125 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccch
Confidence 378886 9999999999999965 6555554 4788887777665 4556779999988743332 232 24665555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|+..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 126 VGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 5666654333 34457788888888887763 2589999999765
No 218
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.21 E-value=3.7 Score=48.34 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+. ..+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 477775 8999999999999986 6444443 5888887777665 4556679999988743332 232 23555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..+++.|+.. ..+|++|.+|...
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5667765544 34457889999888888763 3589999998764
No 219
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.20 E-value=0.85 Score=49.00 Aligned_cols=103 Identities=5% Similarity=0.029 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhC------CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCC-------------
Q 004968 454 HAVTFSAGLACG------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT------------- 512 (721)
Q Consensus 454 ~~v~~AaGlA~~------G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T------------- 512 (721)
+..++|.|++.+ +-..++++. +++..-+++.+ +.++..++||++++-.-...+.-|.+
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344455555554 335566554 55555556544 67788999999988322221111111
Q ss_pred --------cCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 --------QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 --------H~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.-....+.....+|-+....|.++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112344544456677788999999999999999986 689998854
No 220
>PRK08322 acetolactate synthase; Reviewed
Probab=92.00 E-value=3.5 Score=48.11 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~ 114 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDV 114 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC--CccccccH
Confidence 377775 8999999999999998 5443443 4777777777665 4667789999988743322 232 23555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..++..|+.. ..+|++|-+|...
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 115 VAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred HHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 5677765543 46667888888888877763 3579999998764
No 221
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=91.87 E-value=1.5 Score=43.15 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred hCCCcEe-eccccHH-HHHHHHHHHHhCCCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC--CCc
Q 004968 440 KFPERYF-DVGMAEQ-HAVTFSAGLACGGLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG--PTQ 513 (721)
Q Consensus 440 ~fp~R~~-d~GIaE~-~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG--~TH 513 (721)
..|.|++ +.|..-. ..++.|.|++++--+|++++. ..|+.-.-+ + .-+...++|+++++-.-+..|... ..+
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e-L-~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG-L-LLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH-H-HhccccCCCeEEEEEECCCCchheeccCC
Confidence 4577888 5554322 355677777766457777764 566544322 2 234566899877774333222100 000
Q ss_pred C--c----------HHHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 514 C--G----------AFDI-TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 514 ~--~----------~~di-a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ . ..|. ++.+.+ |+.-+...+++|+...++.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 0 0111 222222 5566777899999999999986 688988743
No 222
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=91.76 E-value=1 Score=52.74 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=78.8
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|..--+|.++ ++.+.+..++.-+ ..+-..+.||+++..........-.++|......
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 466654 89999999999999985444443 4777777777665 4556789999988643322111112356655667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|++. ..+|++|.+|...
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 77765544 35566777777777777653 3689999998764
No 223
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.71 E-value=2.9 Score=41.61 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHH-HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRA 481 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra 481 (721)
+++.++|.+.+. ..+++. |.+... ...+. ...|.+++..|-- ...+..|.|++++--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSM-GLASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccc-ccHHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 455566666662 333333 443222 12222 1357888864421 2234577777776456777764 5565332
Q ss_pred HHHHHHHhhcCC-cceEEEEcCCCCcCCCCC--CcC-cHHHH-HHHccCCCcEEEe-eCCHHHHHHHHHHHHHhCCCCEE
Q 004968 482 YDQVVNDVDQQR-LPVRFVITSAGLVGSDGP--TQC-GAFDI-TFMSCLPNMIVMA-PSDEDELVDMVATVASIDDRPVC 555 (721)
Q Consensus 482 ~dqi~~~~a~~~-lpVv~v~~~~G~~G~dG~--TH~-~~~di-a~~~~iPnl~V~~-Psd~~E~~~~l~~a~~~~~~P~~ 555 (721)
..+ ..++..+ +|+++++...+..|.-+. +.. ...|. .+.+.. |+.-.. ..+++|+...++ +++ .++|++
T Consensus 76 -~el-~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~l 150 (181)
T TIGR03846 76 -GVL-PTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTF 150 (181)
T ss_pred -hHH-HHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEE
Confidence 222 3445566 588777743333232221 111 11122 233332 454444 789999999997 765 678998
Q ss_pred EEec
Q 004968 556 FRYP 559 (721)
Q Consensus 556 ir~~ 559 (721)
|...
T Consensus 151 i~v~ 154 (181)
T TIGR03846 151 IHVK 154 (181)
T ss_pred EEEE
Confidence 8653
No 224
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.63 E-value=4.3 Score=43.69 Aligned_cols=104 Identities=9% Similarity=0.136 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhC----CC-eeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCC-------------
Q 004968 453 QHAVTFSAGLACG----GL-KPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT------------- 512 (721)
Q Consensus 453 ~~~v~~AaGlA~~----G~-~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T------------- 512 (721)
..++++|.|++.+ +. ++++++ -+.|..-++..+. .++..+.++++++-.-+..+.-|.+
T Consensus 72 g~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~t 150 (299)
T PRK11865 72 ENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTT 150 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCccccc
Confidence 3566677777665 42 345555 4667777776664 4567788888777333332211111
Q ss_pred -------------cCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 -------------QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 -------------H~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.-....++.....|-+....|.++.|+...++.|++ .++|.+|..
T Consensus 151 sp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 151 SPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 122344544456677778999999999999999986 689998854
No 225
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.52 E-value=3.6 Score=48.68 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=77.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=||+.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|....
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~ 118 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDL 118 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCH
Confidence 377775 8999999999999987 5444443 5788887777665 4666789999988743332 2332 3555444
Q ss_pred HHHHccCC-CcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 519 ITFMSCLP-NMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iP-nl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
..+++.+- -+ .....++.++...+..|+.. ..+|++|.+|...
T Consensus 119 ~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 119 QSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred HHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 56666543 22 34556677777766666542 4589999999765
No 226
>PLN02573 pyruvate decarboxylase
Probab=91.45 E-value=4 Score=48.10 Aligned_cols=115 Identities=12% Similarity=0.172 Sum_probs=73.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc----
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (721)
|++.+ -.|++++.+|-|.|.. | .++|. ++.+.+..+...+ ..+-..+.||+++...... .+.++..||.
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 56654 8899999999999986 8 66665 4777776666655 3445679999998743332 2444445643
Q ss_pred --HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 516 --~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
..+..+++.+-.+ .....+++++..++..|+.. ..+|++|-+|+..
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 2234556654333 23345566655555555442 4589999999875
No 227
>PRK08617 acetolactate synthase; Reviewed
Probab=91.41 E-value=1.3 Score=51.71 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=81.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|...-+ .+|. ++.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 477776 8999999999999998444 4433 5778777777665 4556789999998743332 232 24777766
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|...
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 7778876554 45557788888888877763 2469999998764
No 228
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.39 E-value=4.2 Score=48.07 Aligned_cols=116 Identities=8% Similarity=0.004 Sum_probs=79.0
Q ss_pred cEeeccccHHHHHHHHHHHHhCC-Cee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGG-LKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G-~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
|++.+ .-|++++.+|.|.|... -+| +| .|+.+.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 121 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIES 121 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChhh
Confidence 78887 89999999999999864 444 33 35787776666655 4556779999988743332111112366655667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
+++.+--+ .....++.++..+++.|++.. .+|++|-+|...
T Consensus 122 l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 122 IAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred HhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 77765443 345577888888888887632 479999998764
No 229
>PRK06163 hypothetical protein; Provisional
Probab=91.32 E-value=6.7 Score=39.74 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=64.7
Q ss_pred hCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC-CC--c
Q 004968 440 KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG-PT--Q 513 (721)
Q Consensus 440 ~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG-~T--H 513 (721)
..|.+|+-.| +=-.++.+|.|++++. -++++++. ..|+.-.-+ +...+.+.++|+++++-.-+..|..+ .. +
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~ 125 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-LGTIAALAPKNLTIIVMDNGVYQITGGQPTLT 125 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-HHHHHHhcCCCeEEEEEcCCchhhcCCccCCC
Confidence 3577787433 2223344777777663 46677764 555544333 32222345678777764332222111 11 1
Q ss_pred CcHHHHH-HHccCCCcE-EEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 514 CGAFDIT-FMSCLPNMI-VMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 514 ~~~~dia-~~~~iPnl~-V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
....|+. +.+.+ |+. -+...+.+|+...++.+++ .++|++|-..
T Consensus 126 ~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 126 SQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 1112333 33333 564 4567899999999999986 5899987653
No 230
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.25 E-value=1.4 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=80.0
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++...... .+. ..+|....
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 114 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGT--DAFQEIDV 114 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 367765 8999999999999997 5444443 4788877777665 4556789999998754433 232 23565555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.++++.+-.+... -.+++++..++..|++. ..+|++|-+|...
T Consensus 115 ~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 115 LGLSLACTKHSFL-VQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred hccccCceeeEEE-ECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 5677766555433 35788888888888763 2479999998754
No 231
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.22 E-value=7.2 Score=40.54 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCcEeeccccHHHHHHHHHHHHh----C------CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLAC----G------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS 508 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~----~------G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~ 508 (721)
+|.++++..+.-...+|.+..+|. . --++++++. ..|+...+..+.+. ...++|+++++-..+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta-~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHS-LFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHH-HHcCCCeEEEEECCccccC
Confidence 456667765544466664444443 3 136777774 54554445444333 4578998887743332222
Q ss_pred CCCCcC--------------c----HHHH-HHHcc--CCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 DGPTQC--------------G----AFDI-TFMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 dG~TH~--------------~----~~di-a~~~~--iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
-+.+++ + ..|+ .+.+. ++......+.++.|+..+++.|++..++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 0 0122 22232 3333434599999999999999852578998854
No 232
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.21 E-value=5 Score=47.23 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=79.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+-..+.||+++.............+|......
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIG 120 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhH
Confidence 378876 8999999999999987 6555544 4788777777655 4556679999988743332111112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+=.+ .....+++++...+..|++. ..+|++|.+|...
T Consensus 121 ~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 121 ISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred HhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 67765443 34456788888888888763 3479999998764
No 233
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.21 E-value=4.6 Score=47.48 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=79.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++..........-..+|......+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 77776 8999999999999987 5443433 4778777777665 45567899999886433321111123565555566
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+ .....++.++..++..|+.. ..+|++|-+|...
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 7665443 35567888888888888763 3589999998763
No 234
>PLN02470 acetolactate synthase
Probab=90.87 E-value=5.1 Score=47.27 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ --|++++.+|.|.|.. |...+| .++.+.+..++.-| ..+-..+.||+++...... .+. ..+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 378876 8999999999999987 644444 35888887777665 4556779999998643322 122 22555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|...
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 5666654433 23456888888888888764 3589999999764
No 235
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.74 E-value=5.6 Score=46.81 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=74.2
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|...-+|-++ ++.+....++.-+ ..+...+.||+++...... .|. ..+|.....
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~ 118 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccChh
Confidence 66654 69999999999999984444444 3666666666555 4556779999988643222 232 246666666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. ....+++++...++.|+.. ..+|++|-+|...
T Consensus 119 ~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 119 ELFRECSHYC-ELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred hhcccceeee-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 7777654332 3356677766655555442 4589999998764
No 236
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.73 E-value=7 Score=46.21 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=78.2
Q ss_pred cEeeccccHHHHHHHHHHHHhCC-Cee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGG-LKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G-~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
|++.+ --|++++.+|-|.|... .+| +|. ++.+.+..++-.+ ..+...+.||+++.............+|......
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 67664 77999999999999863 444 433 4777777666655 4556779999998744332111122366655556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..+++.|++. ..+|++|-+|+..
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77765443 34456888888888888763 3469999999875
No 237
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.55 E-value=2.2 Score=50.21 Aligned_cols=117 Identities=12% Similarity=0.087 Sum_probs=77.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=||+.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++.........+..++|......
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 467775 8899999999999986 5444443 4788877777665 4556679999998754433222334567666667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|+. ...+|++|-+|...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 77755333 2344556666555555443 25689999999764
No 238
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=90.44 E-value=2.1 Score=50.33 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=78.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ ..|++++.+|.|.|..--+|-++ +..+.+..++--| ..+...+.||+++.........+-..+|......
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 477776 79999999999999873344333 4677776666655 4556789999988743332111223466665667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++...+..|++. ..+|++|-+|...
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 77766554 34556777777777777653 2479999998764
No 239
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.43 E-value=1.1 Score=45.42 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred hCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCC-----
Q 004968 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGS----- 508 (721)
Q Consensus 440 ~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~----- 508 (721)
+.|.+|+..+- . =-.++..|.|++++. -++++++. ..|+.-. ..+ ..+...++|+++++ ...|+ |.
T Consensus 36 ~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~-~eL-~Ta~~~~lpv~ivV~NN~~~-g~~~~~q 112 (205)
T cd02003 36 RTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH-SEI-VTAVQEGLKIIIVLFDNHGF-GCINNLQ 112 (205)
T ss_pred CCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH-HHH-HHHHHcCCCCEEEEEECCcc-HHHHHHH
Confidence 45788886532 1 122444667766653 45666664 5665422 222 34566799987766 44433 21
Q ss_pred --CCC-----CcC-------------cHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 --DGP-----TQC-------------GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 --dG~-----TH~-------------~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.+. ... ...|..-++.--|+..+...+++|+...++.|++ .++|++|-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 000 0123332222236667777999999999999975 688998754
No 240
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.30 E-value=2.2 Score=50.40 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=79.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...++. ++.+.+.-++.-| ..+-..+.||+++.............+|......+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 77776 7999999999999987 5444433 4778877777665 56667899999987433321111234666556667
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+. ..-.+++++...+..|++. ..+|++|-+|...
T Consensus 118 ~~~~tk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKHN-FQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred HhhhcceE-EecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 77665543 3446778888888887764 2579999998764
No 241
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=89.99 E-value=7.6 Score=41.41 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhC-CCeeEEEec--HhhHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIP--SAFLQR 480 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~ty--s~Fl~r 480 (721)
+.+.++|.+..-..++++++ .|++-.. .+..-+ ++++. +.. ..++.+|.|++++ --++++++. .+|+.-
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~---~~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~ 101 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG---RFSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHH---HhhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHh
Confidence 34556665553233455444 4655321 111122 23433 222 2677788888876 245666664 556542
Q ss_pred HHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc--------------C----cHHHHHHHccCCCcEE---EeeCCHHHH
Q 004968 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--------------C----GAFDITFMSCLPNMIV---MAPSDEDEL 539 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--------------~----~~~dia~~~~iPnl~V---~~Psd~~E~ 539 (721)
. .+-+..++..++||++++-.-+..|.-+.+. . ..+|+.-++.--|..- ....+++|+
T Consensus 102 g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 G-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred h-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 2 2322345778999988885443333211000 0 1122222222124432 578999999
Q ss_pred HHHHHHHHHhCCCCEEEEe
Q 004968 540 VDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~ 558 (721)
..+++.|++ .++|++|-.
T Consensus 181 ~~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 181 EKLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999987 689998855
No 242
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=89.99 E-value=4.6 Score=47.45 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcC--CCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeE-EEecHh
Q 004968 405 DCFIEALVMEAEKD--KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPSA 476 (721)
Q Consensus 405 ~~~~~~L~~~~~~d--~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~-~~tys~ 476 (721)
...++.|.+.+++. ..++. ++|+.-+ +.+. +.++ |++.+ .-|++++.+|-|.|.. |...+ +.|+.+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFg----vpG~~~~~l~~~l~-~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVI----APGSRSTPLTLAAA-EHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEE----CCCCccHHHHHHHH-hCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc
Confidence 34455555555543 23333 3343322 3332 2233 77765 8999999999999987 54333 446888
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH----H-HHHHHHHHH---H
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDED----E-LVDMVATVA---S 548 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~----E-~~~~l~~a~---~ 548 (721)
.+..++.-| ..+...+.||+++.........+-..+|......+++.+-...+-.|.... + +..+++.++ .
T Consensus 83 G~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~ 161 (568)
T PRK07449 83 AVANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQT 161 (568)
T ss_pred HHHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 888888766 466678999999874433311111235666667788876645555565521 1 233444432 2
Q ss_pred hCCCCEEEEecCCC
Q 004968 549 IDDRPVCFRYPRGA 562 (721)
Q Consensus 549 ~~~~P~~ir~~r~~ 562 (721)
...+|++|-+|...
T Consensus 162 ~~~GPV~i~iP~Dv 175 (568)
T PRK07449 162 LQAGPVHINCPFRE 175 (568)
T ss_pred CCCCCEEEeCCCCC
Confidence 34689999998753
No 243
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=89.60 E-value=4.7 Score=43.17 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeecc-c--cHHHHHHHHHHHHhCC-CeeEEEec--Hh
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVG-M--AEQHAVTFSAGLACGG-LKPFCIIP--SA 476 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~G-I--aE~~~v~~AaGlA~~G-~~p~~~ty--s~ 476 (721)
...++.++|.++.....+.+++ .|++-+..+ | +|++.+ + .=..++.+|.|++++. -++++++. .+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4556666665554334455444 466543311 2 344432 2 2234556777877763 45666664 43
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcC----CCCC----------CcCcH----HHH-HHHccCCC--cEEEeeCC
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVG----SDGP----------TQCGA----FDI-TFMSCLPN--MIVMAPSD 535 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G----~dG~----------TH~~~----~di-a~~~~iPn--l~V~~Psd 535 (721)
+++-+...+. .++..++|+++++-.-+..| ...+ +..+. .|. ++...... +......+
T Consensus 99 ~f~mg~~eL~-tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHFI-HALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHHH-HHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 3444454454 34677999888774333222 1111 00111 122 22233322 22335789
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 004968 536 EDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 536 ~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
++|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999986 588988854
No 244
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=89.52 E-value=5.3 Score=40.27 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=70.5
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhC--CCCeEEeecCcc---c-----c--ccHHHHHHHhccCCeEEEEcCCCCCChH
Q 004968 588 KDVALLGYGAMV-QNCLKARALLSKL--GIDVTVADARFC---K-----P--LDIKLVRELCQNHTFLITVEEGSIGGFG 654 (721)
Q Consensus 588 ~dv~Iva~Gs~v-~~al~Aa~~L~~~--Gi~v~VId~~~l---~-----P--lD~e~i~~l~~~~~~vvvvEe~~~gG~g 654 (721)
.||+|.|.|... .+++.|++.|++. +++++|||+--| . | |+.+.+.++.-+.+.||+. .-|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa----fHGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA----FHGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE----ESSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE----cCCCH
Confidence 599999999866 8999999999998 999987776544 2 2 6778898888776777653 24677
Q ss_pred HHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 655 SHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 655 s~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
..|...+-.+.- .-++..-|...+ +..-++-+++-..++|-=+++..+.+.+
T Consensus 111 ~~i~~L~~~R~n---~~~~hV~GY~Ee-GttTTPFDM~vlN~~dRfhLa~dai~~~ 162 (203)
T PF09363_consen 111 WLIHRLLFGRPN---HDRFHVHGYREE-GTTTTPFDMRVLNGMDRFHLAKDAIRRV 162 (203)
T ss_dssp HHHHHHTTTSTT---GGGEEEEEE-S----SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC---CCCeEEEeeccC-CCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence 777766554321 234555554222 2333577777778888666665555544
No 245
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.48 E-value=6.2 Score=46.53 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=76.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ --|++++.+|-|.|...-+| +|. +..+.+..++.-+ ..+-..+.||+++...... .+. | .+|...+.
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~~ 118 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHPD 118 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCC-C-CccccChh
Confidence 67775 79999999999999984444 443 3567777666655 4556789999998743322 122 2 35655556
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+...+++++..++..|+.. ..+|++|-+|...
T Consensus 119 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 119 RLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred hhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 677755333 35667777777777766652 3579999998754
No 246
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.38 E-value=2.7 Score=49.37 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=78.5
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 66665 8899999999999987 5444444 5888887777665 4556779999998743332 2332 24444445
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. +...+++++..++..|+.. ..+|++|-+|...
T Consensus 121 ~i~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 121 GVFENVTKYV-IGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred hhhhccceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 6777665543 4446788888888777752 3589999998754
No 247
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=89.03 E-value=1.3 Score=44.54 Aligned_cols=117 Identities=9% Similarity=0.125 Sum_probs=68.7
Q ss_pred HhCCCcEeeccc-cH-HHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCCC---
Q 004968 439 EKFPERYFDVGM-AE-QHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSD--- 509 (721)
Q Consensus 439 ~~fp~R~~d~GI-aE-~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~d--- 509 (721)
-..|.+|+..+- .= -..+..|.|++++. -++++++. ..|+.-.-+ +. -+...++|+++++ ...|+ |..
T Consensus 40 ~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L~-Ta~~~~lpvi~vV~NN~~y-g~~~~~ 116 (196)
T cd02013 40 FEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-IM-TAVRHKLPVTAVVFRNRQW-GAEKKN 116 (196)
T ss_pred cCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-HH-HHHHhCCCeEEEEEECchh-HHHHHH
Confidence 345788886522 21 33566788877663 46666664 666654333 32 3566789988877 44443 210
Q ss_pred -----CC-----CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH--hCCCCEEEEec
Q 004968 510 -----GP-----TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCFRYP 559 (721)
Q Consensus 510 -----G~-----TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~--~~~~P~~ir~~ 559 (721)
+. ... ..|+.-++.--|+.-..-.++.|+...++.|++ +.++|++|-..
T Consensus 117 q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~ 177 (196)
T cd02013 117 QVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIV 177 (196)
T ss_pred HHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 10 011 122222222225666788899999999999975 14789988553
No 248
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.99 E-value=3.3 Score=49.18 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=||+.+ -.|+.++.+|.|.|.. |...+|. ++.+.+..++.-+ .++..-+.||+++..........-..+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 378887 8999999999999987 5444444 4777777777655 5667789999988744333211112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|++. ..+|++|.+|...
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 66654433 24467888888888887763 3489999998754
No 249
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.91 E-value=2.6 Score=49.41 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=77.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=+++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+.+ .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 477776 8999999999999987 6444443 4778877777665 4666789999988643332 1322 2444444
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.++++.+-.+ .+.-.++.++..++..|++. ..+|++|.+|...
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 4556554333 23346788888888887763 3589999998764
No 250
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=88.88 E-value=1.2 Score=45.04 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHhCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC--
Q 004968 437 FQEKFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD-- 509 (721)
Q Consensus 437 f~~~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d-- 509 (721)
+.-..|.+|++.+- . =-..+..|.|++++. -+|++++. ..|+.-.-| + .-+...++|+++++-..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpviivV~NN~~yg~~~~ 119 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE-L-AVGAQHRIPYIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH-H-HHHHHhCCCeEEEEEeCchHHHHHH
Confidence 33355788987642 2 122556777877663 46777764 666554433 2 24567799988877444332210
Q ss_pred ------C-----CCcCc---------HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 510 ------G-----PTQCG---------AFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 510 ------G-----~TH~~---------~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
+ ..+.. ..|.+-++.--|+.-+...++.|+...++.|++ ..++|++|-.
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 0 00110 122222222226677888999999999999985 2578998854
No 251
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=88.66 E-value=8.7 Score=44.87 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=71.9
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCC-cCc--H
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPT-QCG--A 516 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~T-H~~--~ 516 (721)
|++. .--|++++-+|-|.|.. |...+|. ++.+....++.-| ..+...+.||+++...... .+.+.-. ||. .
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 7777 48999999999999997 5555544 4778877777655 4556679999998743222 1332223 443 2
Q ss_pred H-HHHHHccCCCcEEEeeCCHHHHHH----HHHHHHHhCCCCEEEEecCCC
Q 004968 517 F-DITFMSCLPNMIVMAPSDEDELVD----MVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ~-dia~~~~iPnl~V~~Psd~~E~~~----~l~~a~~~~~~P~~ir~~r~~ 562 (721)
. ...+++.+-.+. ....++.++.. +++.|+. ..+|++|-+|+..
T Consensus 118 ~~~~~~~~~vtk~~-~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQ-AVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEE-EEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 2 235666543332 22344444444 4555544 5689999999864
No 252
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=88.08 E-value=3.9 Score=48.32 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=76.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++....+. .+.+ .+|.....
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 67774 8999999999999987 5444443 4788777777655 5666789999998743332 2322 24444334
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .....+++++..+++.|+.. ..+|++|-+|...
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 455544322 34456788888888887753 2479999998764
No 253
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=88.00 E-value=5.4 Score=39.48 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHHHHHHHHHhhcCC-cceEEEE-cCCCCcCCCCCCcCc-
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRAYDQVVNDVDQQR-LPVRFVI-TSAGLVGSDGPTQCG- 515 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~-lpVv~v~-~~~G~~G~dG~TH~~- 515 (721)
.|.+|+..|.- -..+..|.|++++..++++++. ..|+.- ...+ ..++..+ .|+++++ ...|. +..+.++..
T Consensus 34 ~~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~GDG~f~m~-~~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~ 109 (179)
T cd03372 34 RPLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDGDGSLLMN-LGAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHA 109 (179)
T ss_pred cccccccccch-hhHHHHHHHHHhcCCCcEEEEECCcHHHhC-HHHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCC
Confidence 46677743321 1334477777766447788775 455422 2223 2334444 3555554 44443 222221111
Q ss_pred --HHHH-HHHccCCCcEEEeeC-CHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 516 --AFDI-TFMSCLPNMIVMAPS-DEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 516 --~~di-a~~~~iPnl~V~~Ps-d~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..|. .+.+.. |+...... +++|+...+.+++ ++|.+|-.
T Consensus 110 ~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 110 GKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 1122 233332 55555566 9999999999986 68998755
No 254
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.76 E-value=3.8 Score=47.97 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=79.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCc--CCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~--G~dG~TH~~~~di 519 (721)
|++.+ --|++++.+|.|.|.. |...+|. ++.+.+..+..-| ..+...+.||+++....... +..-..+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 77775 8999999999999987 6545544 4677777777655 45567899999886433221 1112236666666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+...++.++..++..|++. ..+|++|-+|...
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 777766554 45566788887777777652 3468999998764
No 255
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.98 E-value=8.7 Score=43.52 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++-||-|.|.. |...+| .|+.+....++.-+ ..+...+.||+++...... .+. ..+|.....
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchh
Confidence 77765 8999999999999998 544343 45878777776655 4556789999998743332 232 225555566
Q ss_pred HHHccCCCcEE--EeeCCH---HHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIV--MAPSDE---DELVDMVATVAS----IDDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V--~~Psd~---~E~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (721)
.+++.+-.+.. -.|.+. .++..+++.|++ -..+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 77776554432 334431 114444444443 24579999998754
No 256
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=86.52 E-value=5 Score=40.40 Aligned_cols=97 Identities=10% Similarity=0.169 Sum_probs=57.4
Q ss_pred HHHHHHHHhC----C-CeeEEEecHhh-HH--HHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCC
Q 004968 456 VTFSAGLACG----G-LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPN 527 (721)
Q Consensus 456 v~~AaGlA~~----G-~~p~~~tys~F-l~--ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPn 527 (721)
+++|.|+|++ | -++++++..+. ++ ..++.+ +.++...+|++++++..+. +.+++|. ...+ .++. -|
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a-~G 154 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE-LG 154 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-cC
Confidence 3455555554 3 24455554333 12 334444 4556668999999988775 3445554 2222 3333 24
Q ss_pred cEE---EeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 528 MIV---MAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 528 l~V---~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+.+ +...|.+++...++.+.+ .++|++|...
T Consensus 155 ~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 155 FRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred CCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 433 456688999999988865 6789988653
No 257
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=85.84 E-value=8.9 Score=38.45 Aligned_cols=102 Identities=7% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC-CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--------------c--
Q 004968 455 AVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--------------G-- 515 (721)
Q Consensus 455 ~v~~AaGlA~~-G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--------------~-- 515 (721)
.+..|.|++++ .-++++++. ..|++-....+ ..+...++|+++++-.-+..|.-+.+++ +
T Consensus 56 glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
T cd03375 56 ALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNI 134 (193)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCC
Confidence 34477777776 356777764 44433333333 2345678998877633332222111100 0
Q ss_pred --HHHHH-HHccC--CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 516 --AFDIT-FMSCL--PNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 516 --~~dia-~~~~i--Pnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..|+. +...+ ++.......++.|+...++.|++ .++|++|-.
T Consensus 135 ~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 135 EEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22222 22222468999999999999986 688998854
No 258
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.02 E-value=7.8 Score=41.35 Aligned_cols=149 Identities=10% Similarity=0.141 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFL 478 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl 478 (721)
....++.+++.++.-..++.+++ .|++....+..+.+ +. .+... =..++.+|.|+.++. -++++++. .+|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 34567777776553333444444 45553322222211 11 11111 123566777777775 46777774 5555
Q ss_pred HHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CC--------------cCcHHHHHHHccCCCcEEEe---eCCHH
Q 004968 479 QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PT--------------QCGAFDITFMSCLPNMIVMA---PSDED 537 (721)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~T--------------H~~~~dia~~~~iPnl~V~~---Psd~~ 537 (721)
.-++..+. .++..++||++++-.-+..|.-| ++ -....|+.-++.--|...++ +.++.
T Consensus 92 ~iG~~eL~-tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNHLI-HAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHHHH-HHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 44455553 45678999888873332212111 00 00111222222222444445 99999
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q 004968 538 ELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~ 558 (721)
|+...++.|++ .++|++|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 588998854
No 259
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=84.72 E-value=20 Score=35.73 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=60.5
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCc-ceEEEE-cCCCCcCCCC--CCc
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRL-PVRFVI-TSAGLVGSDG--PTQ 513 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~l-pVv~v~-~~~G~~G~dG--~TH 513 (721)
.|.+|+..|-- -..+..|.|++++. -++++++. ..|+.- ...+ ..++..++ |+++++ ...|. |..+ .+.
T Consensus 40 ~~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~eL-~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSM-GHASQIALGIALARPDRKVVCIDGDGAALMH-MGGL-ATIGGLAPANLIHIVLNNGAH-DSVGGQPTV 115 (188)
T ss_pred ccCceeecCcc-ccHHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccHH-HHHHHcCCCCcEEEEEeCchh-hccCCcCCC
Confidence 34888875221 12456777777653 45666664 555432 2223 34455565 555444 44443 2111 111
Q ss_pred CcHHHH-HHHccCCCcEE-EeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 514 CGAFDI-TFMSCLPNMIV-MAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 514 ~~~~di-a~~~~iPnl~V-~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
....|. .+...+ |+.- ....++.|+...+..+++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111222 233333 4543 456799999999999976 578998755
No 260
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=84.61 E-value=5.7 Score=46.69 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=80.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 377776 8999999999999998 5444444 4778877777665 5666789999988643221 1111124666666
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++...+..|+.. ..+|++|-+|+..
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 6777766544 34556788888877777763 3578999998764
No 261
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=84.37 E-value=6.8 Score=41.07 Aligned_cols=102 Identities=13% Similarity=0.264 Sum_probs=61.6
Q ss_pred HHHHHHHHHhC------CCeeEEEe-cHhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcC--cHHHH-HHH
Q 004968 455 AVTFSAGLACG------GLKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC--GAFDI-TFM 522 (721)
Q Consensus 455 ~v~~AaGlA~~------G~~p~~~t-ys~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~--~~~di-a~~ 522 (721)
.+++|.|+|++ ..+.+|-+ -..|.. ..++.+ ..++..++| ++++++..+. +.+++++. ...|+ .++
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 34566666664 34444444 344432 245544 456777886 6666666664 44455422 22332 334
Q ss_pred ccCCCcEEEeeC--CHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 523 SCLPNMIVMAPS--DEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 523 ~~iPnl~V~~Ps--d~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+.+ |+.++.-. |..++...+..+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 444 78887777 9999999999987543789988654
No 262
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=84.36 E-value=3.8 Score=40.14 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred hCCCcEeeccccHH-HHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC-------
Q 004968 440 KFPERYFDVGMAEQ-HAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS------- 508 (721)
Q Consensus 440 ~fp~R~~d~GIaE~-~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~------- 508 (721)
+.|.+|+..+-.=. ..+..|.|++++- -++++++. ..|+.-. ..+ ..+...++|+++++-..+..+.
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45788887633111 2345677777663 35566554 5565322 223 3455669998887743332110
Q ss_pred ---C--------CC-CcCcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ---D--------GP-TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ---d--------G~-TH~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ +. ......|+. +.... |+..+.-.+++|+...++.+++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 00 001112222 23332 5666677889999999999976 678988743
No 263
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=84.22 E-value=4.1 Score=39.16 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCcEeecccc--HHHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC-----
Q 004968 442 PERYFDVGMA--EQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP----- 511 (721)
Q Consensus 442 p~R~~d~GIa--E~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~----- 511 (721)
|.+++..+.. =-..++.|.|+++.. -++++++ -..|+. .+..+ ..+...++|+++++..-+..+..+.
T Consensus 36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~ 113 (168)
T cd00568 36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAF 113 (168)
T ss_pred CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHH
Confidence 4555543322 123445677777664 3445554 355654 44444 3456778998888754443221110
Q ss_pred -------CcCcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 512 -------TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 512 -------TH~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
......|+. +... -|+......++.|+...++.++. .++|++|..
T Consensus 114 ~~~~~~~~~~~~~d~~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 114 YGGRVSGTDLSNPDFAALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred cCCCcccccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111112222 3333 36777788889999999999974 688988754
No 264
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=83.93 E-value=6.1 Score=38.97 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=52.1
Q ss_pred HHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCCCCCC-----------cCcHHHHH
Q 004968 456 VTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPT-----------QCGAFDIT 520 (721)
Q Consensus 456 v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~T-----------H~~~~dia 520 (721)
+..|.|++++. -++++++. ..|+.-++..+ ..+...++|+++++ +..++ |..+.+ .....|+.
T Consensus 57 l~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~ 134 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIE 134 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHH
Confidence 34666666653 45666664 56654433334 34567799987776 33332 221111 01111222
Q ss_pred -HHcc--CCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 521 -FMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 521 -~~~~--iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+.+. ++...|..|.+.+++...++.|++ .++|++|..
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 233344444555555588888875 688998754
No 265
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=83.89 E-value=5.8 Score=38.31 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHH-HhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS-NAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn-~A~~~~~plivIv~dN~~ 254 (721)
.++.|.|+|+. | .+++++.. ..+. ...++.+. .++.++.|++++...-+.
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~ 101 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGI 101 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcE
Confidence 45566677653 4 45555555 4443 47888888 888888999999987654
No 266
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=83.80 E-value=6.1 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvavi-GDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
.+..+|.|++.+ +. ..++.+. |-|.. -..+++-.|...+.|+++|.-+.+.
T Consensus 46 ~a~~~A~G~a~~----~~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 46 GAAGAAAGYARA----GG-PPVVIVTSGTGLL---NAINGLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred HHHHHHHHHHHh----hC-CEEEEEcCCCcHH---HHHHHHHHHHhcCCCEEEEeCCCCh
Confidence 455667777665 33 4444444 78766 4668888888888999999977654
No 267
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=83.45 E-value=11 Score=39.78 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred CcCCCcchHHHHHHHHHHHH--H-cCC--C--CeEEEEEcCCC--cccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 190 NAGHGCNSVSAGLGMAVARD--I-KGK--R--ECIVTVISNGT--TMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~--l-~g~--~--~~VvaviGDGa--l~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
..+.-||.++.++-.|+..= . .+. . .+++.++.||. .++|..-+.+..|...+..++||+.||.
T Consensus 133 ~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 133 TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 33445677777776665421 1 011 1 28999999999 8889988888888888888888888775
No 268
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=83.27 E-value=12 Score=40.37 Aligned_cols=102 Identities=11% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC----Cc----------C---
Q 004968 455 AVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP----TQ----------C--- 514 (721)
Q Consensus 455 ~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~----TH----------~--- 514 (721)
++.+|.|++++. -++++++. .+|+......+.+ ++..++|+++++-.-+..|.-+. |. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~t-A~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIH-AGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHH-HHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 556777877763 46666664 5554455555544 46789998887743333221111 10 0
Q ss_pred -cHHHHHHHccCCCcEEE---eeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 515 -GAFDITFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 515 -~~~dia~~~~iPnl~V~---~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
...|+.-++.--|...+ ...++.|+..+++.|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333322344443 68999999999999986 688998754
No 269
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=82.96 E-value=6.6 Score=43.19 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhH--HHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCc-C
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFL--QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQ-C 514 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl--~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH-~ 514 (721)
+..-..-+|=.=-+++|+|-++-+.|-.. |+ ++|.+.- |=.+-.-+|.++..++||||++-.-+. .+ -|.. |
T Consensus 131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q 208 (358)
T COG1071 131 FLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQ 208 (358)
T ss_pred cCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhc
Confidence 33333334444446666666666667333 44 4454432 222222347899999999999966554 23 2222 3
Q ss_pred cHHHHH----HHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004968 515 GAFDIT----FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (721)
Q Consensus 515 ~~~dia----~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~ 558 (721)
...++. ..-.||++.| -=.|...++...+.|.++ .++|++|..
T Consensus 209 ~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 333322 2336899988 788888888888888763 457998843
No 270
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=82.50 E-value=7.7 Score=45.64 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=78.1
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC----C--CCc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD----G--PTQ 513 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d----G--~TH 513 (721)
|++.+ --|++++.+|-|.|...-+ .+|. ++.+.+..++.-| ..+...+.||+++...... .+.. - -.+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 77776 7899999999999998433 4433 4888888777766 4556779999988743222 1111 0 123
Q ss_pred Cc-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 514 CG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 514 ~~-~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
|. .....+++.+-.+ .+...+++++...+..|+.. ..+|++|.+|...
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 44 3555677755443 45667888888888877763 3579999998653
No 271
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=81.66 E-value=5.1 Score=33.09 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs 655 (721)
+|+|.+. +....|.+|.+.|++.||+.+.+|+..-.+. .+.+.+.. ..+-++|++.+...||+-.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4666665 4557899999999999999999999753332 23344432 2334667777767898764
No 272
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=80.72 E-value=3.1 Score=39.83 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred hCCCcEeec--cccHHHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCC--cC----
Q 004968 440 KFPERYFDV--GMAEQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGL--VG---- 507 (721)
Q Consensus 440 ~fp~R~~d~--GIaE~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~--~G---- 507 (721)
..|.||+.. .-+=..++++|.|++++. -++++++ -.+|+.- ...+ ..+...++|+++++ +..+. .+
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGH-HHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchh-HHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888873 334455667778887763 4555555 4666654 3233 34566788988777 33333 10
Q ss_pred CCCC----------CcCcHHHHHHHccCCCcEEEeeCCH--HHHHHHHHHHHHhCCCCEEEE
Q 004968 508 SDGP----------TQCGAFDITFMSCLPNMIVMAPSDE--DELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 508 ~dG~----------TH~~~~dia~~~~iPnl~V~~Psd~--~E~~~~l~~a~~~~~~P~~ir 557 (721)
..+. .|...+. .+.+.+ |+..+.-.++ +|+...+++|++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~-~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFA-ALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHH-HHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHH-HHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1122222 333433 6666664555 999999999985 78999873
No 273
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=80.44 E-value=5.8 Score=34.52 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc----cCCeEEEEcCCCCCChHHHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ----NHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~----~~~~vvvvEe~~~gG~gs~v 657 (721)
..+|+|++.| +....|..|.+.|++.|++.+.+|+.. |.+...++.+ .+=+.|++.....||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHH
Confidence 4689999998 467899999999999999999999753 3333233322 23356677765689987543
No 274
>PRK06154 hypothetical protein; Provisional
Probab=79.99 E-value=13 Score=43.87 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=71.5
Q ss_pred HHHhCCCcEeeccc--cHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC-C-
Q 004968 437 FQEKFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS-D- 509 (721)
Q Consensus 437 f~~~fp~R~~d~GI--aE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~-d- 509 (721)
+.-..|.+|+..+- +=-..+..|.|++++- -++++++. ..|+.-.-| + .-+...++|+++++...+.+|. .
T Consensus 416 ~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~E-L-~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 416 YVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMD-F-ETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-H-HHHHHhCCCeEEEEEECCccceeeh
Confidence 33355889987642 1223556677777763 46777764 566544433 2 4556779998887754443221 0
Q ss_pred -----CCCcCc---HHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHH--hCCCCEEEEec
Q 004968 510 -----GPTQCG---AFDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCFRYP 559 (721)
Q Consensus 510 -----G~TH~~---~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~--~~~~P~~ir~~ 559 (721)
+..+.. ..|.+ +...+ |+.-+.-.+++|+...++.|++ ..++|++|-..
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~ 553 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLEVI 553 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 111110 01333 33333 6677777899999999999986 25789988553
No 275
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=79.28 E-value=16 Score=48.49 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ .-|++++-||.|.|..--+|.++ |+.+....++-.+ ..+...+.||+++...... .+. ..+|.+...
T Consensus 341 ~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~--ga~Q~iDq~ 416 (1655)
T PLN02980 341 TCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAV-VEASQDFVPLLLLTADRPPELQDA--GANQAINQV 416 (1655)
T ss_pred eEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcC--CCCcccchh
Confidence 67754 99999999999999985555443 5778777777665 3556789999998744332 232 236777777
Q ss_pred HHHccCCCcEEE--eeCCH-------HHHHHHHHHHHHhCCCCEEEEecC
Q 004968 520 TFMSCLPNMIVM--APSDE-------DELVDMVATVASIDDRPVCFRYPR 560 (721)
Q Consensus 520 a~~~~iPnl~V~--~Psd~-------~E~~~~l~~a~~~~~~P~~ir~~r 560 (721)
.+++.+-.+.+- .|.+. ..+...+..|..-..+||+|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 888877665443 34441 234444444433235899999984
No 276
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=77.29 E-value=20 Score=35.56 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=64.8
Q ss_pred hCCCcEeeccc--cHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC----CC
Q 004968 440 KFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS----DG 510 (721)
Q Consensus 440 ~fp~R~~d~GI--aE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~----dG 510 (721)
..|.+++..+- +=-..+..|.|+++.- -++++.+. ..|+.-..+ +. .++..++|+++++...+..+. .+
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l~-ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-LS-TMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-HH-HHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 34678886532 1122445666766653 35666653 666543333 43 345667887777644332221 01
Q ss_pred --CCcCc--HHHHH-HHccCC---CcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 511 --PTQCG--AFDIT-FMSCLP---NMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 511 --~TH~~--~~dia-~~~~iP---nl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..+.. ..|.. +....- ++..+...++.|+...++.+++..++|++|-.
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 11111 12322 233322 36778889999999999999863578998855
No 277
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=77.02 E-value=20 Score=42.29 Aligned_cols=109 Identities=13% Similarity=0.252 Sum_probs=64.8
Q ss_pred EeeccccHHHHHHHHHHHHhC----CC-eeEEEec--HhhHH-HHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc---
Q 004968 445 YFDVGMAEQHAVTFSAGLACG----GL-KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--- 513 (721)
Q Consensus 445 ~~d~GIaE~~~v~~AaGlA~~----G~-~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--- 513 (721)
++.+|+.= +.+++|.|+|.+ |. ..++++. +.+.. .+++.+ +.++.+++|+++++..-+.. .++++-
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~s-i~~~~~~~~ 185 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMS-IAENHGGLY 185 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCc-CCCCCchhh
Confidence 35666643 467788888775 32 2344444 44544 667766 67888889999999776652 222221
Q ss_pred --Cc------HHH-HHHHccCCCcEEE---eeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 514 --CG------AFD-ITFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 514 --~~------~~d-ia~~~~iPnl~V~---~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.. ..+ -..+..+ ||..+ -..|..++...++.|.+ .++|++|..
T Consensus 186 ~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~ 240 (581)
T PRK12315 186 KNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHI 240 (581)
T ss_pred hhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11 000 1234443 55444 55677778888887743 578999855
No 278
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=75.34 E-value=11 Score=33.49 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v 657 (721)
..+|+|++.| +....|.+|.+.|++.|++.+.+|+..- |--.+.+.+.. ..+=+.|++.....||+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHH
Confidence 4689999988 5678999999999999999999998531 21122232222 123355678876689987654
No 279
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=73.70 E-value=56 Score=38.11 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCc--CCC-------C-C
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSD-------G-P 511 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~--G~d-------G-~ 511 (721)
||+.+ --|++++.+|.|.|.. | +.+|. ++.+.+..++.-+ ..+-..+.||+++....... +.+ | .
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 117 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGI-AGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDG 117 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHH-HHHhhccCCEEEEECCCCcchhhcCceeeeecCCC
Confidence 67765 8999999999999997 7 56664 5788777666655 34556799999887432210 000 0 0
Q ss_pred CcCcHHHHHHHccCCCcE-EEeeCC-HHHHHHHHHHHHHhCCCCEEEEecCCCc
Q 004968 512 TQCGAFDITFMSCLPNMI-VMAPSD-EDELVDMVATVASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 512 TH~~~~dia~~~~iPnl~-V~~Psd-~~E~~~~l~~a~~~~~~P~~ir~~r~~~ 563 (721)
.+|.. ..+++.+--+. ++.|.+ +.++..+++.|+. ..+|++|-+|+...
T Consensus 118 ~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~Dv~ 168 (539)
T TIGR03393 118 DFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVDVA 168 (539)
T ss_pred chHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEeccccc
Confidence 12222 23444332221 224556 6888888998886 56899999998753
No 280
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=73.40 E-value=25 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.1
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|+.++-| .|..+....++.+.+ .++|+++.
T Consensus 135 g~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 135 GLKVVAP---STPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 6666667 678888888888887 47899875
No 281
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=73.30 E-value=17 Score=43.31 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal-n~A~~~~~plivIv~dN~~ 254 (721)
.++.|.|||++ | -++++++ -+.|.. -++|-+ +.++..++|++++....+.
T Consensus 364 ~vg~AaGlA~~----G-~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 364 AVTFAAGMAIE----G-YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHHC----C-CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 45567777753 2 3555555 456654 777777 5678888999999988776
No 282
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=72.97 E-value=12 Score=41.09 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCC-CeeEEEecH--hhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--cHHHHHHH---ccC
Q 004968 454 HAVTFSAGLACGG-LKPFCIIPS--AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFM---SCL 525 (721)
Q Consensus 454 ~~v~~AaGlA~~G-~~p~~~tys--~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~dia~~---~~i 525 (721)
.++|+|.|..+.+ -+++++++. .|.+-.+-+-++.++..++||++++...+. +...+++. ...|++-. -.+
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G~ 208 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYGI 208 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCCC
Confidence 3444444444444 456666664 454322223346788999999999976664 21122221 12232222 234
Q ss_pred CCcEEEeeCCHHHHHH----HHHHHHHhCCCCEEEEe
Q 004968 526 PNMIVMAPSDEDELVD----MVATVASIDDRPVCFRY 558 (721)
Q Consensus 526 Pnl~V~~Psd~~E~~~----~l~~a~~~~~~P~~ir~ 558 (721)
|++.| .-.|..++.. .+..+.. .++|++|-.
T Consensus 209 ~~~~V-dg~d~~av~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 209 PGVQV-DGNDVLAVYAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred CEEEE-CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 54443 2334443344 4444433 478998854
No 283
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=71.96 E-value=41 Score=39.02 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=36.0
Q ss_pred HHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 207 ARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 207 A~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
||--+..|-.|.+|-+|-+.+. ++.|++.+|..-+.|+|+-+|--.
T Consensus 219 aRGA~vtDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred hccCccccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC
Confidence 3333345788888888888874 899999999999999998886544
No 284
>PLN02790 transketolase
Probab=71.09 E-value=24 Score=42.38 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee----CCHHHHHHHHHHHHHhCCC
Q 004968 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP----SDEDELVDMVATVASIDDR 552 (721)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P----sd~~E~~~~l~~a~~~~~~ 552 (721)
.+++.+ +.++..+|| ++++++.-++ .-+|++... .+++ ..+..+ ||.++.+ .|.+++..++..|.+..++
T Consensus 153 ~~~EAl-~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAA-SLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 445655 677888997 6777776665 334454332 2332 245655 9999988 4778888888887543578
Q ss_pred CEEEEec
Q 004968 553 PVCFRYP 559 (721)
Q Consensus 553 P~~ir~~ 559 (721)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9998653
No 285
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=71.02 E-value=22 Score=41.96 Aligned_cols=101 Identities=14% Similarity=0.246 Sum_probs=60.3
Q ss_pred HHHHHHHHHhC-----C-CeeEEEecHhh-HH--HHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC-----cHHHH-
Q 004968 455 AVTFSAGLACG-----G-LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----GAFDI- 519 (721)
Q Consensus 455 ~v~~AaGlA~~-----G-~~p~~~tys~F-l~--ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-----~~~di- 519 (721)
.+++|.|+|++ + -++++++..+. ++ ..++.+ +.++..+.|++++++..++ +-++++.. ...++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 44566666654 1 35666665443 22 445544 4556667999999888776 33444421 11111
Q ss_pred HHHccCCCcEEEee---CCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 520 TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 520 a~~~~iPnl~V~~P---sd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
..++.. |+.++.+ .|.+++...+..+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 234443 6666544 789999999988865 5789988653
No 286
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=69.17 E-value=16 Score=29.94 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=41.8
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-c-CCeEEEEcCCCCCChHHH
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-N-HTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~-~~~vvvvEe~~~gG~gs~ 656 (721)
|+|.+. +....|.+|.+.|++.|+..+.+|+..- |-..+.+.+... . .=+.|+++....||+...
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 444443 5568899999999999999999999753 111122222221 1 335677887778888654
No 287
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=68.97 E-value=26 Score=41.94 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=38.3
Q ss_pred cCcCCCcc-hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004968 189 FNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 189 ~~~G~~G~-~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal-n~A~~~~~plivIv~dN~~ 254 (721)
|-+|..=+ .+++|.|||++ | -+++++.+. .|.. .+++.+ +.++..++|++++.+.-+.
T Consensus 364 id~GIaE~~mvg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 364 FDVGIAEQHAVTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 34444333 45567777763 2 356666654 5554 788887 6688889999999976665
No 288
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=68.48 E-value=26 Score=39.88 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=68.6
Q ss_pred HHHHHhCCCcEeeccccHHHHHH--HHHHHHhC-CCeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEc-CCCCcCC
Q 004968 435 QLFQEKFPERYFDVGMAEQHAVT--FSAGLACG-GLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGS 508 (721)
Q Consensus 435 ~~f~~~fp~R~~d~GIaE~~~v~--~AaGlA~~-G~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~G~ 508 (721)
.-+..+-|.|..|.|--=..-|| +|.++|.. =-+.++++ -+.|=.-++| +.-++..+|||++++. ..|++|.
T Consensus 413 ~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~ 490 (571)
T KOG1185|consen 413 TLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGL 490 (571)
T ss_pred hhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCccccc
Confidence 34566779999998865443332 33333333 23445554 3555444444 2355778999988876 6677653
Q ss_pred CCCCcCcHH------HHHHHccCC-----------CcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 509 DGPTQCGAF------DITFMSCLP-----------NMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 509 dG~TH~~~~------dia~~~~iP-----------nl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
|-.+.-++. ++.-....+ |.+=+.-.++.|+...++.+++..++|++|-
T Consensus 491 d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 491 DDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred CcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 322221110 000011111 1223444699999999999998777899873
No 289
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=68.16 E-value=8.7 Score=43.51 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcCCCcchHHHHHHHHH
Q 004968 190 NAGHGCNSVSAGLGMAV 206 (721)
Q Consensus 190 ~~G~~G~~is~A~G~Al 206 (721)
|.|++|++||.|+|+++
T Consensus 415 g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 415 GASGIDGTLSTALGIAL 431 (432)
T ss_pred chhhHHHHHHHHHHhhc
Confidence 56999999999999975
No 290
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=67.44 E-value=23 Score=29.72 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=45.4
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
+..+|+|.+ -+....|.+|.+.|++.|++.+.+|+..- -+.+.+.+.. ..+=++|++.....||+. .|.++|
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAYL 78 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHHh
Confidence 344666555 57778999999999999999999998531 1222333322 122345666655578884 444443
No 291
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=67.17 E-value=35 Score=33.29 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEEC
Q 004968 193 HGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILND 251 (721)
Q Consensus 193 ~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~d 251 (721)
|=..+.-+|-|.|.+. ++-..+++..|=|..+ ..-++..|...+.||++|.-+
T Consensus 43 hE~~A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 43 DERSAAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred ChHHHHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 3334445566666542 3333333333555554 335788888888999999854
No 292
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=66.76 E-value=49 Score=32.08 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhh-hcCCCEEEEEECCC
Q 004968 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG-YLDSNMIVILNDSR 253 (721)
Q Consensus 194 ~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~-~~~~plivIv~dN~ 253 (721)
=+.+.++|.|.+++ .++.+|++.+=| + |-..-+|..|. ..+.|+++|+-+-+
T Consensus 43 ee~aa~~aAg~~~~-----~~~~~v~~~~sG-~--gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 43 EEEGVGICAGAYLA-----GKKPAILMQSSG-L--GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred hHHHHHHHHHHHHh-----cCCcEEEEeCCc-H--HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34566677776643 355678887777 3 35666788888 77799999995544
No 293
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=65.73 E-value=20 Score=38.33 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=49.2
Q ss_pred eeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--cHHHHHHHc---cCCCcEEEeeCCHHHHH
Q 004968 468 KPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMS---CLPNMIVMAPSDEDELV 540 (721)
Q Consensus 468 ~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~dia~~~---~iPnl~V~~Psd~~E~~ 540 (721)
+++++++ ..|.+-.+-+-++.++..++|+++++...+. +...++.. ...|++-.. .+|++.| .-.|+.++.
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~ 204 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVY 204 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHH
Confidence 4555554 4454322223346788899999999976664 32222221 112222222 3444432 334678888
Q ss_pred HHHHHHHH---hCCCCEEEEe
Q 004968 541 DMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 541 ~~l~~a~~---~~~~P~~ir~ 558 (721)
..+..|++ ..++|++|-.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 88877764 2468998854
No 294
>PTZ00089 transketolase; Provisional
Probab=64.60 E-value=41 Score=40.41 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEeeC----CHHHHHHHHHHHHHhCCC
Q 004968 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS----DEDELVDMVATVASIDDR 552 (721)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~Ps----d~~E~~~~l~~a~~~~~~ 552 (721)
.+++.+ +.++..+|| ++++++.-+. .-+|+++-. .+++ ..++.+ ||.++.+. |..++...+..|....++
T Consensus 164 ~~~EAl-~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~ 240 (661)
T PTZ00089 164 VSQEAL-SLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240 (661)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 456655 677888987 6677776665 445666531 1222 356665 99999984 677788788777554478
Q ss_pred CEEEEec
Q 004968 553 PVCFRYP 559 (721)
Q Consensus 553 P~~ir~~ 559 (721)
|++|...
T Consensus 241 P~~I~~~ 247 (661)
T PTZ00089 241 PKLIIVK 247 (661)
T ss_pred cEEEEEE
Confidence 9998653
No 295
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=64.60 E-value=50 Score=31.33 Aligned_cols=56 Identities=23% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 193 HGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 193 ~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
|=..+..+|.|++.+. .+.-++.+...-++. ...+++..|...+.|+++|.-+...
T Consensus 42 ~E~~A~~~A~g~~~~~----~~~~v~~~~~gpG~~--n~~~~l~~A~~~~~Pll~i~~~~~~ 97 (155)
T cd07035 42 HEQGAVGMADGYARAT----GKPGVVLVTSGPGLT--NAVTGLANAYLDSIPLLVITGQRPT 97 (155)
T ss_pred CHHHHHHHHHHHHHHH----CCCEEEEEcCCCcHH--HHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 3344566677776653 223344444244443 4568999999999999999877654
No 296
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=63.32 E-value=44 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
|+.++.| .|..++...++.+.+ .++|++|..
T Consensus 165 nl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 165 GLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 6677778 677777888888876 478999864
No 297
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=62.70 E-value=39 Score=27.60 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=43.6
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
+|+|.+ -+....|.+|.+.|++.|+..+.+|+.. .+ +.+.+.+.. ..+=++|+++....||+. .|.+++
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHHh
Confidence 345544 4677889999999999999999999764 22 333343332 222355667766678865 344443
No 298
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=62.39 E-value=37 Score=40.85 Aligned_cols=59 Identities=12% Similarity=0.278 Sum_probs=38.4
Q ss_pred cCcCCC-cchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHhhhcCCCEEEEEECCCCC
Q 004968 189 FNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRHS 255 (721)
Q Consensus 189 ~~~G~~-G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal-n~A~~~~~plivIv~dN~~~ 255 (721)
|-+|.. .+.++.|.|||+. | -++|++++ ..|.. -+++-+ +.++..++|+++++...+.+
T Consensus 401 fdvGIAEq~~vg~AaGLA~~----G-~kPvv~~f--s~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~v 461 (677)
T PLN02582 401 FDVGIAEQHAVTFAAGLACE----G-LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLV 461 (677)
T ss_pred cccCcCHHHHHHHHHHHHHC----C-CeEEEEec--HHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 444433 2345567777663 4 46677765 45554 677754 77788889999999877763
No 299
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=61.44 E-value=69 Score=31.45 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~ 365 (721)
|+.++.| .|..++...++.+.+.+.++|++|...
T Consensus 138 g~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 138 GMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp TEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred ccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 6777777 678888888888876323789987653
No 300
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=60.26 E-value=20 Score=38.71 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHHHhC----CCeeEEEe-cHhhH--H-HHHHHHHHHhhcCCcceEEEEcCCCC-cC---CCCCCcCcHHHHHHHc
Q 004968 456 VTFSAGLACG----GLKPFCII-PSAFL--Q-RAYDQVVNDVDQQRLPVRFVITSAGL-VG---SDGPTQCGAFDITFMS 523 (721)
Q Consensus 456 v~~AaGlA~~----G~~p~~~t-ys~Fl--~-ra~dqi~~~~a~~~lpVv~v~~~~G~-~G---~dG~TH~~~~dia~~~ 523 (721)
+.+|+|.|++ |-+.++.. +.+-. + .-++. +|.++..++||+|++..-++ .+ .....-....|.+-.-
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Ea-lN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEA-LNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHH-HHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHH-HHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhcc
Confidence 4555566654 65554443 43322 2 22333 37899999999999965443 11 1111111233434444
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~ 558 (721)
.+|++. +-=.|+.++...++.|+++ .++|++|-.
T Consensus 186 gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 186 GIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 577665 4668899999988888863 367998844
No 301
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=59.76 E-value=42 Score=28.35 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=39.3
Q ss_pred cEEEEEech-hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 589 DVALLGYGA-MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 589 dv~Iva~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
++.|++.+. ....|++.++.|++.|+++.+ |.+. +.+....-..-......++++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 567777765 457899999999999999977 4443 455554433333455677777754
No 302
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=59.75 E-value=39 Score=36.69 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=49.3
Q ss_pred CCeeEE-EecHhhH---HHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--cHHHHHHHc--cCCCcEEEeeCCHH
Q 004968 466 GLKPFC-IIPSAFL---QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMS--CLPNMIVMAPSDED 537 (721)
Q Consensus 466 G~~p~~-~tys~Fl---~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~dia~~~--~iPnl~V~~Psd~~ 537 (721)
+-..+| +.|.+.. -..|+.+ |++++.+||||||+-..+. |..-++.- ...| -|.| .|||+.| -=.|.-
T Consensus 185 ~~~~v~~alYGDGAaNQGQ~fEa~-NMA~LW~LP~IFvCENN~y-GMGTs~~Rasa~te-yykRG~yiPGl~V-dGmdvl 260 (394)
T KOG0225|consen 185 REDAVCFALYGDGAANQGQVFEAF-NMAALWKLPVIFVCENNHY-GMGTSAERASASTE-YYKRGDYIPGLKV-DGMDVL 260 (394)
T ss_pred cCCceEEEEeccccccchhHHHHh-hHHHHhCCCEEEEEccCCC-ccCcchhhhhcChH-HHhccCCCCceEE-CCcchh
Confidence 433444 4587664 1334543 7899999999999965543 32112222 2233 1334 3898865 233444
Q ss_pred HHHHHHHHHHH---hCCCCEEEEe
Q 004968 538 ELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 538 E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
-++...++|.+ ..++|.++-+
T Consensus 261 aVr~a~KfA~~~~~~g~GPilmE~ 284 (394)
T KOG0225|consen 261 AVREATKFAKKYALEGKGPILMEM 284 (394)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45555555543 2478988744
No 303
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=58.34 E-value=42 Score=40.10 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=36.8
Q ss_pred cCcCCCc-chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004968 189 FNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 189 ~~~G~~G-~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal-n~A~~~~~plivIv~dN~~ 254 (721)
|-+|..= +.++.|.|+|+. | -+++++++ +.|.. .+++-+ +.++..++|+++++...+.
T Consensus 402 fdvGIAEq~~Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 402 FDVGIAEQHAVTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred cCCCcCHHHHHHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 4444432 345667777764 3 35566654 44543 667665 5667888999999987775
No 304
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=58.31 E-value=35 Score=37.56 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=48.3
Q ss_pred CeeEEEecH--hhHH-HHHHHHHHHhhcCCcceEEEEcCCCC-cCCC--CCCcC-cHHHHHHHccCCCcEEEeeCCHHHH
Q 004968 467 LKPFCIIPS--AFLQ-RAYDQVVNDVDQQRLPVRFVITSAGL-VGSD--GPTQC-GAFDITFMSCLPNMIVMAPSDEDEL 539 (721)
Q Consensus 467 ~~p~~~tys--~Fl~-ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~d--G~TH~-~~~dia~~~~iPnl~V~~Psd~~E~ 539 (721)
-+++++++. .|.+ ..++. ++.++..++||+|++..-+. .+.. ..+.. ...+.+-.-.+|++.| .=.|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHH
Confidence 456666664 3432 11222 36778899999999976663 2211 01111 2233333335777765 33566655
Q ss_pred HHHHHHHHH---hCCCCEEEEe
Q 004968 540 VDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (721)
...+..|++ ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 555555543 2468998854
No 305
>PRK10638 glutaredoxin 3; Provisional
Probab=57.62 E-value=39 Score=28.59 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=40.6
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
+|+|.+. +....|.+|.+.|++.|+..+++|+..-.... +.+.+.. ..+=++|+++....||+.+.
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~-~~l~~~~g~~~vP~i~~~g~~igG~~~~ 69 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKR-EEMIKRSGRTTVPQIFIDAQHIGGCDDL 69 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHH-HHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 3555543 34578999999999999999999985311111 2232322 22235566776568998643
No 306
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=56.55 E-value=30 Score=33.63 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=43.2
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
++|++=|..-....++++.|++.||.+=.|-.. ..|.+.|+.++.+-..|++|++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 456677766677888999999999877666654 5789999999877788888875
No 307
>PRK12754 transketolase; Reviewed
Probab=55.97 E-value=70 Score=38.49 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCcH-HHH-HHHccCCCcEEEe---eCCHHHHHHHHHHHHHhCCCC
Q 004968 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCGA-FDI-TFMSCLPNMIVMA---PSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~~-~di-a~~~~iPnl~V~~---Psd~~E~~~~l~~a~~~~~~P 553 (721)
..+|.+ +.++..+|| ++++++.-++ .-+|+|.... +|+ ..++.. ||.++. =.|..++...+..|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 345544 677889999 5677777665 4466665422 232 234444 777654 335666666666664445789
Q ss_pred EEEEec
Q 004968 554 VCFRYP 559 (721)
Q Consensus 554 ~~ir~~ 559 (721)
++|...
T Consensus 239 t~I~~~ 244 (663)
T PRK12754 239 SLLMCK 244 (663)
T ss_pred EEEEEE
Confidence 998664
No 308
>PRK05899 transketolase; Reviewed
Probab=55.34 E-value=78 Score=37.76 Aligned_cols=88 Identities=10% Similarity=0.162 Sum_probs=53.8
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcC-cHHHH-HHHccCCCcEEEeeC--CHHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAPS--DEDEL 539 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~di-a~~~~iPnl~V~~Ps--d~~E~ 539 (721)
+.++++. ..|.. ..++.+ +.++..++| ++++++..+. +.++++.. ...|+ ..++.+ |+.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 4555554 44432 224444 466778997 5666666665 33333322 12333 345554 78887767 89999
Q ss_pred HHHHHHHHHhCCCCEEEEec
Q 004968 540 VDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~ 559 (721)
...+..|.+ .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999875 4789988654
No 309
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.35 E-value=14 Score=33.70 Aligned_cols=42 Identities=36% Similarity=0.526 Sum_probs=22.8
Q ss_pred eeeeeCceEE-eccCCCCH-HHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 324 LFEELGLYYI-GPVDGHNI-EDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 324 l~ea~G~~~~-g~vdGhd~-~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
.++++|+.|+ -||++.++ ++-.+.|.++.+. .++|+++||+|
T Consensus 52 ~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 52 AAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 3456777764 26665543 4445566665553 57899999998
No 310
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=54.23 E-value=32 Score=28.56 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHH
Q 004968 596 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v 657 (721)
-+....|.+|...|++.|+..+.+|+..- |-..+.+.+.. ..+=++|++++...||+.+..
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 35668899999999999999999998642 21122232222 122366778877789987653
No 311
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=53.89 E-value=99 Score=29.47 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 195 G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
..+..+|-|.+.+ +.. .++..-|-|..+ ...+|-.|...+.|+++|+-+-.
T Consensus 51 ~~A~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 51 HAAAEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 3444555555543 322 445555666664 55788888887899999996644
No 312
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=52.94 E-value=44 Score=38.34 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCccChHHH--HHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhc-CCcceEEEEcCC
Q 004968 429 EMDLSLQLF--QEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQ-QRLPVRFVITSA 503 (721)
Q Consensus 429 ~~~~~l~~f--~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~-~~lpVv~v~~~~ 503 (721)
+|-+.|.-+ -.+.|+ |++.. -.|.++.=.|=|.|.. |.-.++.||+..-.-|++-| .-++ -++||+.+....
T Consensus 26 PGDFNL~LLD~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSAlNGI--AGsYAE~vpVihIVG~P 102 (561)
T KOG1184|consen 26 PGDFNLSLLDKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTFGVGELSALNGI--AGAYAENVPVIHIVGVP 102 (561)
T ss_pred CCcccHHHHHHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEeccchhhhhccc--chhhhhcCCEEEEECCC
Confidence 344555433 345566 44433 4688888888899986 88888889988766677654 2223 389999987544
Q ss_pred CC--cCCCCCCcC--cHHHHHH-HccCCCc--EEEeeCCHHHHHH----HHHHHHHhCCCCEEEEecCCC
Q 004968 504 GL--VGSDGPTQC--GAFDITF-MSCLPNM--IVMAPSDEDELVD----MVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 504 G~--~G~dG~TH~--~~~dia~-~~~iPnl--~V~~Psd~~E~~~----~l~~a~~~~~~P~~ir~~r~~ 562 (721)
.. .+.+---|| +..|... +|..-++ .+..=-|.+++.. +++.|+. ..+|+||-.|...
T Consensus 103 nt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~-~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 103 NTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK-ESKPVYIGVPANL 171 (561)
T ss_pred CcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH-hcCCeEEEeeccc
Confidence 33 122223455 3333332 3332332 1222344555544 4455543 6899999988764
No 313
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=51.45 E-value=51 Score=28.34 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=39.1
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 589 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+++|+..|. ....|.+.++.|++.|+.+.+-+ .-..+....-.....+...++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHhhcCCeEEEEECc
Confidence 578899998 44789999999999999998776 3344444433333445566676653
No 314
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=50.38 E-value=37 Score=33.37 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=38.1
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
+|++++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.++..+.||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcC
Confidence 46789999999987653 4667888899888888542 44556677777776543
No 315
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.34 E-value=38 Score=31.00 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=36.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
++|.+. .....|.+|.+.|+++|++.+++|... .|++.+.+.++++.
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~ 48 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGD 48 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHH
Confidence 444332 345778999999999999999999986 78999888777654
No 316
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=48.68 E-value=94 Score=35.90 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=83.8
Q ss_pred CCeEEEecCCCCccChHHHH--HhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhc-CC
Q 004968 419 KDIVVVHAGMEMDLSLQLFQ--EKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQ-QR 493 (721)
Q Consensus 419 ~~iv~i~ad~~~~~~l~~f~--~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~-~~ 493 (721)
..|+.+- |-+.|.-+. ..+|+ |++-. -.|.++.=+|=|.|.- |.-.++.||+..=.-|++-| .-++ -+
T Consensus 20 ~~iFGVP----GDyNL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA~NGI--AGSYAE~ 92 (557)
T COG3961 20 KSIFGVP----GDYNLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSALNGI--AGSYAEH 92 (557)
T ss_pred ceeeeCC----CcccHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhhhccc--chhhhhc
Confidence 3455443 445554333 34565 66654 5799999999999986 88889999988766677644 1123 38
Q ss_pred cceEEEEcCCCC-c-CCCCCCcC----cHHHHHHHccCCCc----EEEeeCC--HHHHHHHHHHHHHhCCCCEEEEecCC
Q 004968 494 LPVRFVITSAGL-V-GSDGPTQC----GAFDITFMSCLPNM----IVMAPSD--EDELVDMVATVASIDDRPVCFRYPRG 561 (721)
Q Consensus 494 lpVv~v~~~~G~-~-G~dG~TH~----~~~dia~~~~iPnl----~V~~Psd--~~E~~~~l~~a~~~~~~P~~ir~~r~ 561 (721)
+||+.+....-- + +..=--|| +.|+ -|++.--++ ..+.+.+ +.|...++++++. ..+|+||.+|..
T Consensus 93 vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~-~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~~RPvYI~lP~d 170 (557)
T COG3961 93 VPVVHIVGVPTTSAQASGLLLHHTLGDGDFK-VFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-QRRPVYIGLPAD 170 (557)
T ss_pred CCEEEEEcCCCcchhhccchheeeccCCchH-HHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-hcCCeEEEcchH
Confidence 899988743322 1 22223455 3444 233332222 1244444 7889999999976 689999999865
Q ss_pred C
Q 004968 562 A 562 (721)
Q Consensus 562 ~ 562 (721)
.
T Consensus 171 v 171 (557)
T COG3961 171 V 171 (557)
T ss_pred H
Confidence 3
No 317
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=47.44 E-value=1e+02 Score=35.95 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFL 478 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl 478 (721)
..|..+|.++|.+.. =+=++|.+... ||=|.-...++++=-..+=|.|.++.=+|.|+|..-.+|++- |+.+-.
T Consensus 8 t~~a~v~~eeL~r~G---V~~vvicPGSR-STPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ 83 (566)
T COG1165 8 TLWARVFLEELARLG---VRDVVICPGSR-STPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAV 83 (566)
T ss_pred HHHHHHHHHHHHHcC---CcEEEECCCCC-CcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchh
Confidence 345666666665543 34466766532 455655556677666688899999999999999998888765 465544
Q ss_pred HHHHHHHHHHhhcCCcceEEEE-cCCC-CcCCCCCCcCcHHHHHHHccCCCcEE--EeeCCHHHHHHHHHHHHH------
Q 004968 479 QRAYDQVVNDVDQQRLPVRFVI-TSAG-LVGSDGPTQCGAFDITFMSCLPNMIV--MAPSDEDELVDMVATVAS------ 548 (721)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~-~~~G-~~G~dG~TH~~~~dia~~~~iPnl~V--~~Psd~~E~~~~l~~a~~------ 548 (721)
..-|-.| -.+.+.+.|.++.. ||.- +.+- ..-|.+.+..+|.+-|+..+ =.|.+..++.+.+++...
T Consensus 84 ANl~PAV-iEA~~srvpLIVLTADRP~EL~~~--GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a 160 (566)
T COG1165 84 ANLYPAV-IEANLSRVPLIVLTADRPPELRGC--GANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQA 160 (566)
T ss_pred hhccHHH-HhhhhcCCceEEEeCCCCHHHhcC--CCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4445544 36689999988776 4431 1221 12577778889998888755 377777777766654432
Q ss_pred --hCCCCEEEEec
Q 004968 549 --IDDRPVCFRYP 559 (721)
Q Consensus 549 --~~~~P~~ir~~ 559 (721)
...+|+=|-.|
T Consensus 161 ~~~~~GpVHiN~P 173 (566)
T COG1165 161 RTPHAGPVHINVP 173 (566)
T ss_pred cCCCCCceEecCC
Confidence 23457666444
No 318
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.39 E-value=72 Score=29.18 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=38.6
Q ss_pred CcEEEEEec--h-hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 588 KDVALLGYG--A-MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 588 ~dv~Iva~G--s-~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
.++.|++.+ . ....+++.++.|++.|+.+.+ |.+ +.+..+.-.....+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 367888888 4 457888999999999999987 333 445444322223455667776654
No 319
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=47.10 E-value=89 Score=27.67 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=46.1
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc----cCCeEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ----NHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~----~~~~vvvvEe~~~gG~gs~ 656 (721)
.+|+|.+. +....|.+|.+.|.+.|++.+++|+-. .|--.+....+.+ .+=+.|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 46777776 677899999999999999999999874 2222222222322 2335677887678998753
No 320
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.77 E-value=99 Score=30.04 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
+.-+|-|.|.+. ++-..+++..|=|..+ ..-++..|...+.||++|.-+..
T Consensus 50 A~~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 50 AAFAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 334566666543 3333344444666554 33578888888899999986543
No 321
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=46.54 E-value=34 Score=30.85 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
....|.+|.+.|+++||+++.+|... .|++.+.+.++++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSK 44 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHH
Confidence 45788999999999999999999984 68888888776643
No 322
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=45.22 E-value=71 Score=38.39 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
.+++|.|+|+. +.-.++++.+ ..|.. ..++++.+++..++|+++|....+.
T Consensus 408 mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~ 458 (653)
T TIGR00232 408 MGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSI 458 (653)
T ss_pred HHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 45677777763 2224444444 36654 7789999999999999999977665
No 323
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=45.05 E-value=1.5e+02 Score=32.09 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=50.7
Q ss_pred CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc-----CcHHHHHHHccCCCcEEEeeCCHHHH
Q 004968 467 LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ-----CGAFDITFMSCLPNMIVMAPSDEDEL 539 (721)
Q Consensus 467 ~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH-----~~~~dia~~~~iPnl~V~~Psd~~E~ 539 (721)
-+++++++ ..|.+-.+-+-++.++..++|+++++...++ |...++. ....+++-.-.+|++.| .-.|+.++
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 34555665 3454322222236778899999999976653 3222211 12333333335666543 44567777
Q ss_pred HHHHHHHHH---hCCCCEEEEe
Q 004968 540 VDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (721)
...+..|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777764 2467998854
No 324
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=44.53 E-value=51 Score=30.40 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=36.6
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
|+|..+-+ ...|.+|.+.|+++||..+++|... .|++.+.+.+.++..
T Consensus 3 itiy~~p~-C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~ 50 (117)
T COG1393 3 ITIYGNPN-CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKL 50 (117)
T ss_pred EEEEeCCC-ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHc
Confidence 44444333 3589999999999999999999875 788888887766543
No 325
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=44.17 E-value=1.4e+02 Score=31.19 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=38.1
Q ss_pred HHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCC-CCCC-ceEEEecCCccccCCCHHHHHH
Q 004968 630 KLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL-DSGV-KWRPIVLPDNYIEHASPTQQLA 693 (721)
Q Consensus 630 e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~-~~~~-~~~~~g~~d~f~~~g~~~~l~~ 693 (721)
+.+..+.+....+++++... . -..+++.|.+.|+. +.++ -..+++.|++-+..++.+++.+
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~ 217 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ--R-IHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAE 217 (257)
T ss_pred hhHHHHhcCCCeEEEECCch--h-HHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHH
Confidence 45666776666777777432 2 45677888777763 2222 2457788888776676666543
No 326
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=42.60 E-value=1.1e+02 Score=33.92 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc--CcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHH--hCCCCEEE
Q 004968 482 YDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCF 556 (721)
Q Consensus 482 ~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~--~~~~P~~i 556 (721)
++.+ |.++..++|++|++..-+. +..-++. +...+++ ....+|++.| -=.|..++...+..|++ +.++|++|
T Consensus 178 ~Eal-n~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lI 254 (362)
T PLN02269 178 FEAL-NIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVL 254 (362)
T ss_pred HHHH-HHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4433 6888999999999987764 2211221 1222221 1224676654 66677777877777764 23789998
Q ss_pred Ee
Q 004968 557 RY 558 (721)
Q Consensus 557 r~ 558 (721)
-.
T Consensus 255 e~ 256 (362)
T PLN02269 255 EM 256 (362)
T ss_pred EE
Confidence 55
No 327
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=42.60 E-value=71 Score=36.37 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=46.7
Q ss_pred CeeEEEecHh--hHHHH-HHHHHHHhhcCCcceEEEEcCCCC-cCC--CCCCcC-cHHHHHHHccCCCcEEEeeCCHHHH
Q 004968 467 LKPFCIIPSA--FLQRA-YDQVVNDVDQQRLPVRFVITSAGL-VGS--DGPTQC-GAFDITFMSCLPNMIVMAPSDEDEL 539 (721)
Q Consensus 467 ~~p~~~tys~--Fl~ra-~dqi~~~~a~~~lpVv~v~~~~G~-~G~--dG~TH~-~~~dia~~~~iPnl~V~~Psd~~E~ 539 (721)
-+++++++.+ +.+-. ++. ++.++..++||+|++...+. .|. .-.|.. .....+-.-.+|++.| .=.|..++
T Consensus 223 ~~vvv~~~GDGa~~eG~f~Ea-Ln~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av 300 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFEC-LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKV 300 (433)
T ss_pred CCEEEEEECCCccccChHHHH-HHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHH
Confidence 3456666644 33221 333 36788999999999966553 221 001111 1222222234666654 34555655
Q ss_pred HHHHHHHHH---hCCCCEEEEe
Q 004968 540 VDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (721)
...+..|++ ..++|++|-.
T Consensus 301 ~~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 301 REVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 544444443 2468998853
No 328
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.18 E-value=1e+02 Score=25.53 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=35.3
Q ss_pred cEEEEEechh-hHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-cCCeEEEEcC
Q 004968 589 DVALLGYGAM-VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~~~~vvvvEe 647 (721)
++.|++.+.. ...|++.+..|++.|+.+.+.... +.++ +.+....+ ....++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 6778877763 467999999999999998774432 2343 34433322 3345565553
No 329
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=41.84 E-value=55 Score=30.81 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCcc-ccc-------------cHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFC-KPL-------------DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l-~Pl-------------D~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
....+..+++.|++.|+++++||++-. .|+ |.+.+.+.+++.+.+|++=.-+.|++.+.+..++.
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD 94 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLD 94 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHH
Confidence 446666777788888999999999986 222 12333445556677766655455777766655553
No 330
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=41.77 E-value=1.1e+02 Score=35.09 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHH-HHhh--------hcCCCEEEEEECCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAM-SNAG--------YLDSNMIVILNDSR 253 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~Vvavi-GDGal~~G~~~Eal-n~A~--------~~~~plivIv~dN~ 253 (721)
.++.|.|+|++ | -+++|.+. .+-.+ .+++-+ |.++ ++++|++|+..|-+
T Consensus 201 ~vg~AaGlA~~----G-~rPiv~~~~~~f~~---ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~ 259 (464)
T PRK11892 201 FAGIGVGAAFA----G-LKPIVEFMTFNFAM---QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGA 259 (464)
T ss_pred HHHHHHHHHhC----C-CEEEEEEehHHHHH---HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCC
Confidence 56678888875 2 35565554 33333 566655 6666 78899999876544
No 331
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=41.47 E-value=3.1e+02 Score=30.79 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCc-ceEEEEcCCCCcCCCCCCcC---cHHHHH-HHccCCCcEEEee
Q 004968 480 RAYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQC---GAFDIT-FMSCLPNMIVMAP 533 (721)
Q Consensus 480 ra~dqi~~~~a~~~l-pVv~v~~~~G~~G~dG~TH~---~~~dia-~~~~iPnl~V~~P 533 (721)
..++.+ +.++..+| +++++++.-++ ..||+|-. ..+++. -|+++ ||.|+.-
T Consensus 163 ~vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 345554 45666675 67777777776 34566644 233432 35554 8888765
No 332
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=41.25 E-value=1.3e+02 Score=30.56 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=38.7
Q ss_pred HHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCC-CCCC-ceEEEecCCccccCCCHHHHHH
Q 004968 629 IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL-DSGV-KWRPIVLPDNYIEHASPTQQLA 693 (721)
Q Consensus 629 ~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~-~~~~-~~~~~g~~d~f~~~g~~~~l~~ 693 (721)
.+.+..+.+....+++.+.. ..+ ..+++.+.+.|+. +.++ -+.+++.+++-+..++.+++.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~--~~~-~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 208 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSA--HIL-DKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLAD 208 (229)
T ss_pred hHHHHHHhcCCCeEEEECcH--HHH-HHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHH
Confidence 45566676666677777754 233 5677777777653 2222 2447788888777776666543
No 333
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=40.67 E-value=1.3e+02 Score=32.94 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee---CCHHHHHHHHHHHHHhCCCC
Q 004968 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P---sd~~E~~~~l~~a~~~~~~P 553 (721)
.+++.+ ..++..+|. ++++.|.-++ ..||.|--. .+|+ .-+++. ||.|+.- .|.+++...+..|-...++|
T Consensus 159 ~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 334544 456667775 5666676665 446766531 2222 234544 8888776 68888888888886545899
Q ss_pred EEEEecCCCc
Q 004968 554 VCFRYPRGAI 563 (721)
Q Consensus 554 ~~ir~~r~~~ 563 (721)
++|......+
T Consensus 236 ~~Ii~~TvkG 245 (332)
T PF00456_consen 236 TVIIARTVKG 245 (332)
T ss_dssp EEEEEEE-TT
T ss_pred ceeecceEEe
Confidence 9997754433
No 334
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.08 E-value=1.3e+02 Score=33.53 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=37.7
Q ss_pred EechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEE
Q 004968 594 GYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 594 a~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvv 644 (721)
.||+.-..|...++-|.+.|++|.++++..- |.+.|.+.+-+.+.+++
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 6788888999999999999999999999876 66666665545455443
No 335
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.87 E-value=56 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
+....|.+|.+.|+++|+..+++|... .|++.+.+.++++..
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~ 48 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKV 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHh
Confidence 445789999999999999999999976 799999998887653
No 336
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=39.67 E-value=75 Score=31.33 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCcccccCC-CCCCccee--------cCceEEEEeCCcEEEEEechhhHHHHHHH
Q 004968 536 EDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIE--------IGKGKVLVEGKDVALLGYGAMVQNCLKAR 606 (721)
Q Consensus 536 ~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p-~~~~~~~~--------~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa 606 (721)
.+|...++..|+- .++-+||.--... ...... -...++++ .++...+.+-.+|.|++-.+.-..+.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~Em-~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGEM-EAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GGG-GGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecChH-HHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 4678888988864 7888888542221 110000 00011111 11122344456899999999999999999
Q ss_pred HHHHhCCCCeEEeecCccccccHHHHHHHh------ccCCeEEEEcCCCCCChHHHHHH
Q 004968 607 ALLSKLGIDVTVADARFCKPLDIKLVRELC------QNHTFLITVEEGSIGGFGSHVSH 659 (721)
Q Consensus 607 ~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~------~~~~~vvvvEe~~~gG~gs~v~~ 659 (721)
+.|.++||.+-+|... +| +.+.+.+.+ +..+.+|--|++..-|+-+.++.
T Consensus 102 ~~L~~~gi~~v~Vs~~--~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ 157 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSPN--KP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAA 157 (172)
T ss_dssp HHHHHHT--EEEEE-S--S----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHH
T ss_pred HHHHHCCCCEEEEEec--CC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHH
Confidence 9999999999888821 21 111222211 22245666677765566655543
No 337
>PRK10853 putative reductase; Provisional
Probab=39.24 E-value=44 Score=30.79 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
....|.+|.+.|+++|+.++++|... .|++.+.+.+.+++
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~ 48 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDE 48 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHH
Confidence 45788999999999999999999986 89999988877654
No 338
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=39.15 E-value=77 Score=25.89 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCC-CCCChH
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFG 654 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~-~~gG~g 654 (721)
.....|..|.+.|++.|+..+.+|+.. .|-..+.+.+.-..+=+++++++. ..+||-
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 345789999999999999999999975 222222222221122355667554 357764
No 339
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=38.80 E-value=46 Score=36.73 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEEC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILND 251 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~d 251 (721)
++++|+|+++| +.++++..-|+.|. ..+|.|..|+-..+|+++++-+
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 67888898888 67788888888887 8899999999999999887765
No 340
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.77 E-value=1.1e+02 Score=25.96 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 589 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 589 dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
+++|+..+. ....|++.+..|++.|+++.+ |.+. +.+....-..-..+...++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777765 457899999999999999977 5443 344443322223455667766543
No 341
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=38.69 E-value=1.4e+02 Score=32.06 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=42.3
Q ss_pred cCcCCCcc-hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc-CCCEEEEEECCCCC
Q 004968 189 FNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL-DSNMIVILNDSRHS 255 (721)
Q Consensus 189 ~~~G~~G~-~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~-~~plivIv~dN~~~ 255 (721)
|..|.+=+ .++.|.|+|++- ..+.+ .+=+.|..+-+||-+.+...+ ++|+.+|+-+-+.+
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~G-----k~Pfv--~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t 113 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAG-----KKPFV--STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVT 113 (312)
T ss_pred eecchHHHHHHHHHHHHHhcC-----CCcee--echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcc
Confidence 45565544 467888888762 23333 445788878899988777554 59999999998873
No 342
>PRK10329 glutaredoxin-like protein; Provisional
Probab=38.68 E-value=84 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=38.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc---cCCeEEEEcCCCCCChH
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ---NHTFLITVEEGSIGGFG 654 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~---~~~~vvvvEe~~~gG~g 654 (721)
|+|.+. .....|..|.+.|++.||..+.+|+.. |.+...++.. ..=.++++++....||.
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCC
Confidence 455443 555889999999999999999999975 3443332221 12255666665556664
No 343
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=38.67 E-value=76 Score=30.99 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=35.2
Q ss_pred CcEEEEEechhhH----HHHHHHHHHHhCCC---CeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 588 KDVALLGYGAMVQ----NCLKARALLSKLGI---DVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 588 ~dv~Iva~Gs~v~----~al~Aa~~L~~~Gi---~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
..++|+++|+.+. .-..++++|++... +++|+|.-+.-|.-... +..++.+|+|+.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~l~~~----l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPNLLGL----LAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHHHHHH----hcCCCcEEEEEe
Confidence 4688999998662 34456777776543 68899999875443322 334445555553
No 344
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=38.56 E-value=1.2e+02 Score=25.57 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=37.2
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 589 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
++.|+..+. ....+++.+..|++.|+.+.+-+ .. +.+....-..-......++++.+
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECC
Confidence 567777775 45788899999999999888744 22 44555432222334466777775
No 345
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.37 E-value=96 Score=30.15 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEEcC--CCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 195 CNSVSAGLGMAVARDIKGKRECIVTVISN--GTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 195 G~~is~A~G~AlA~~l~g~~~~VvaviGD--Gal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
..+..+|.|++.+. ++..+|+.-= |.++ ..-+|..|...+.||++|.-+-..
T Consensus 49 ~~A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~ 102 (172)
T PF02776_consen 49 QGAAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPS 102 (172)
T ss_dssp HHHHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSG
T ss_pred chhHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccch
Confidence 34556677776653 4555555533 3332 334677777777999999977653
No 346
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=37.72 E-value=40 Score=30.51 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=32.4
Q ss_pred eCCcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEE
Q 004968 586 EGKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 643 (721)
Q Consensus 586 eG~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vv 643 (721)
+..|++||++|... ..--+..+.|+++||.+++.|-+.- -.+...+..+.++|+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~A----c~tyN~L~~EgR~V~ 106 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAA----CRTYNILASEGRRVA 106 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHH----HHHHHHHHHTTC-EE
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHH----HHHHHHHHhCCccEE
Confidence 46799999999764 3344667788999999999885431 123334555555554
No 347
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=37.44 E-value=1.4e+02 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=22.6
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|+..+.| .|..++...++.+.+ .++|++|.
T Consensus 142 gl~V~~P---sd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 142 GLQIVAC---STPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 5666667 677778888888776 47899886
No 348
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=37.36 E-value=48 Score=30.48 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=28.9
Q ss_pred EeCCcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecC
Q 004968 585 VEGKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 585 ~eG~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
.+..|++||++|... ..--+..+.|+++||.+++.|-+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 345689999999854 33445667889999999998854
No 349
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.02 E-value=2e+02 Score=28.74 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHHh-CCCCeEEeecCccccccH--------------HHHHHHhccCCeEEEEcCCCCCChHHHHHHH
Q 004968 596 GAMVQNCLKARALLSK-LGIDVTVADARFCKPLDI--------------KLVRELCQNHTFLITVEEGSIGGFGSHVSHF 660 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~-~Gi~v~VId~~~l~PlD~--------------e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~ 660 (721)
|.+-..|..+++.+++ .|+++++++++-..|-+. ..+ +.+...+.||+.=--+.|++...+..+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD~ii~gsPty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATP-DELADYDAIIFGTPTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCH-HHHHhCCEEEEEecccCCCchHHHHHH
Confidence 4455667777888887 899999999874333111 112 333455666554433468888888877
Q ss_pred HHhcC
Q 004968 661 IALDG 665 (721)
Q Consensus 661 l~~~~ 665 (721)
+...+
T Consensus 92 ld~~~ 96 (200)
T PRK03767 92 LDQTG 96 (200)
T ss_pred HHHhc
Confidence 76643
No 350
>PRK12753 transketolase; Reviewed
Probab=36.91 E-value=2.1e+02 Score=34.55 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCcH-HHH-HHHccCCCcEEEeeC---CHHHHHHHHHHHHHhCCCC
Q 004968 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCGA-FDI-TFMSCLPNMIVMAPS---DEDELVDMVATVASIDDRP 553 (721)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~~-~di-a~~~~iPnl~V~~Ps---d~~E~~~~l~~a~~~~~~P 553 (721)
..++.+ +.++..+|| ++++++.-++ .-+|+++... +++ ..++.. ||.++.+- |..++...+..|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEVC-SLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHHH-HHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 445554 677888997 6667776665 3355554321 222 345555 88887544 4556666666665445789
Q ss_pred EEEEec
Q 004968 554 VCFRYP 559 (721)
Q Consensus 554 ~~ir~~ 559 (721)
++|...
T Consensus 239 ~~I~~~ 244 (663)
T PRK12753 239 SLIICR 244 (663)
T ss_pred EEEEEE
Confidence 998664
No 351
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=36.88 E-value=2.2e+02 Score=23.93 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=44.2
Q ss_pred EEEEEechhhHHHHHHHHHHHh-----CCCCeEEeecCccccccHHHHHHHhc---cCCeEEEEcCCCCCChHHHHHHHH
Q 004968 590 VALLGYGAMVQNCLKARALLSK-----LGIDVTVADARFCKPLDIKLVRELCQ---NHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~-----~Gi~v~VId~~~l~PlD~e~i~~l~~---~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
|+|.+ -+....|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+=+.|+++.-..||+.. +.+++
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~-~~~~~ 79 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCTD-FEAYV 79 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHH-HHHHH
Confidence 34443 3456778888888888 799999999975 3333444544443 223556677666899864 44444
Q ss_pred H
Q 004968 662 A 662 (721)
Q Consensus 662 ~ 662 (721)
.
T Consensus 80 ~ 80 (85)
T PRK11200 80 K 80 (85)
T ss_pred H
Confidence 4
No 352
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=36.61 E-value=2e+02 Score=34.75 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=38.6
Q ss_pred cCcCCCc-chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH-hhhcCCCEEEEEECCCC
Q 004968 189 FNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN-AGYLDSNMIVILNDSRH 254 (721)
Q Consensus 189 ~~~G~~G-~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~-A~~~~~plivIv~dN~~ 254 (721)
|-+|..= +.++.|.|||.. | -++|+++.. .|.+ -+|+-+.+ ++..++|++++++.-+.
T Consensus 426 fDvGIAEQhaVt~AAGLA~~----G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGl 485 (701)
T PLN02225 426 FNVGMAEQHAVTFSAGLSSG----G-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGL 485 (701)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCcc
Confidence 4455432 355667777753 3 477778774 6655 77776655 67788999999986554
No 353
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=36.15 E-value=57 Score=29.72 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
.....|.+|.+.|+++|++++.+|... .|++.+.+.++++..
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 455789999999999999999999975 889998888877653
No 354
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=36.12 E-value=58 Score=29.55 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
+....|.+|.+.|++.|+.++.+|..- .|++.+.+.++++..
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 455788999999999999999999875 788888887766543
No 355
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=35.47 E-value=73 Score=29.74 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
.....|.+|.+.|+++|+..+++|..- .|++.+.|.+.++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 355789999999999999999999875 78888888776543
No 356
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=35.46 E-value=1.3e+02 Score=28.66 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=35.7
Q ss_pred EEEEEechhh----HHHHHHHHHHHhCCC--CeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 590 VALLGYGAMV----QNCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 590 v~Iva~Gs~v----~~al~Aa~~L~~~Gi--~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
++|+++|+.. ..-..+++.|++... .++++|..+.- .+.+.. +.+++.+|+|+.-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~~~-l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVMFR-ARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHHHH-hcCCCEEEEEEeC
Confidence 4688888877 346677888876543 48889988753 333333 3466777777763
No 357
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=34.99 E-value=1.3e+02 Score=28.57 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=35.7
Q ss_pred EEEEEechhh----HHHHHHHHHHHhC-C--CCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 590 VALLGYGAMV----QNCLKARALLSKL-G--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 590 v~Iva~Gs~v----~~al~Aa~~L~~~-G--i~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
++|+++|+.. ..-..+++.|++. + -.++++|..+.- .+.+ ..+.+++.+|+|+.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEc
Confidence 4688899876 3456777888764 3 458899988743 2333 33346678888876
No 358
>PRK10824 glutaredoxin-4; Provisional
Probab=34.80 E-value=1.2e+02 Score=27.83 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=45.1
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
..+|+|++-| +....|..|.+.|.+.|++..++|+-. .|=-.+.+.+.. ..+=+-|.|.....||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 4578899988 478899999999999999999998753 111112222221 12223455776667887643
No 359
>PRK10026 arsenate reductase; Provisional
Probab=34.07 E-value=92 Score=29.78 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
.....|.+|.+.|+++|+.++++|... .|++.+.|.++++..
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 456789999999999999999999976 888998888776543
No 360
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=33.98 E-value=1.9e+02 Score=28.02 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=32.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~Vvavi-GDGal~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
-|=..+.-+|-|.+.+. +..||++ ...+++. ..-+|..|...+.||++|.-+..
T Consensus 42 rhE~~A~~mA~gyar~t------~~gv~~~t~GpG~~n--~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 42 CNELNAGYAADGYARVK------GLGALVTTYGVGELS--ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred CCHHHHHHHHHHHHHhh------CCEEEEEcCCccHHH--HHHHHHHHHHcCCCEEEEecCCC
Confidence 34444555666666542 2444444 3333432 34578888777899999996654
No 361
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=32.43 E-value=57 Score=29.57 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=27.5
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
.+++||++|... ..--+..+.|+++||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999855 33345667889999999998854
No 362
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=32.43 E-value=2.7e+02 Score=28.55 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=54.4
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCC---eEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhc
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGID---VTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~---v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~ 664 (721)
.++.||--=|.++.| +.+| |+. ++++++. +-+.+.++.+...+.+++++-+... --++|+.+|.++
T Consensus 95 ~~v~iIPgiSS~q~a---~ARl---g~~~~~~~~islH---gr~~~~l~~~~~~~~~~vil~~~~~--~P~~IA~~L~~~ 163 (210)
T COG2241 95 EEVEIIPGISSVQLA---AARL---GWPLQDTEVISLH---GRPVELLRPLLENGRRLVILTPDDF--GPAEIAKLLTEN 163 (210)
T ss_pred cceEEecChhHHHHH---HHHh---CCChHHeEEEEec---CCCHHHHHHHHhCCceEEEeCCCCC--CHHHHHHHHHhC
Confidence 356666633444432 2333 554 4455544 6778888877766667777766542 246899999999
Q ss_pred CCCCCCCc-eEEEecCCccccCCCHHH
Q 004968 665 GLLDSGVK-WRPIVLPDNYIEHASPTQ 690 (721)
Q Consensus 665 ~~~~~~~~-~~~~g~~d~f~~~g~~~~ 690 (721)
|+.+.++- ..+++.+|+=+..++.++
T Consensus 164 G~~~~~~~VlE~L~~~~Eri~~~~~~~ 190 (210)
T COG2241 164 GIGDSRVTVLENLGYPDERITDGTAED 190 (210)
T ss_pred CCCCceEEEEcccCCCchhhhcCchhh
Confidence 98422221 235677776555555444
No 363
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.38 E-value=3.5e+02 Score=24.80 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=46.6
Q ss_pred EEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecC---ceEEEEeCCcEEEEEechhhHHHHHH
Q 004968 529 IVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIG---KGKVLVEGKDVALLGYGAMVQNCLKA 605 (721)
Q Consensus 529 ~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~g---k~~vl~eG~dv~Iva~Gs~v~~al~A 605 (721)
.|+.|.+.+|+..++++|.+ .+.|+.++-.......... ......+... +...+.+....+.+..|.......+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 48999999999999999965 5778888765444322111 1112223332 22223344667778888887766554
Q ss_pred H
Q 004968 606 R 606 (721)
Q Consensus 606 a 606 (721)
.
T Consensus 81 l 81 (139)
T PF01565_consen 81 L 81 (139)
T ss_dssp H
T ss_pred c
Confidence 3
No 364
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=32.00 E-value=1.7e+02 Score=30.53 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=48.4
Q ss_pred cCceEEEE-eCCcEEEEEechhhHHHHHHHHHHHhCC--CCeEEee-cCcccc-ccHHHHHHHhccCCeEEEEcCCCCC
Q 004968 578 IGKGKVLV-EGKDVALLGYGAMVQNCLKARALLSKLG--IDVTVAD-ARFCKP-LDIKLVRELCQNHTFLITVEEGSIG 651 (721)
Q Consensus 578 ~gk~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~G--i~v~VId-~~~l~P-lD~e~i~~l~~~~~~vvvvEe~~~g 651 (721)
+|++.... .++.+++|+-|+.+...+..++.+.+.| .++.++- .++=.- +..+.+.++..+ ..+++++++..|
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~G 174 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWKG 174 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCCc
Confidence 45544443 2445999999999999999999999888 6666554 343222 344556666544 577778876643
No 365
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=31.84 E-value=2e+02 Score=32.16 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=57.2
Q ss_pred EEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC---CeEEEEcCCCCCChH---H
Q 004968 582 KVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH---TFLITVEEGSIGGFG---S 655 (721)
Q Consensus 582 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~---~~vvvvEe~~~gG~g---s 655 (721)
.++.+|.+++++..|..-..-.+-+ +..|.++.+++..+=.|+|.+.|.+.+++. +.|.++..-...|.- .
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia---~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIA---ERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHH---HHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 3456788999999999988765544 456999999999999999999998887743 344333332333432 4
Q ss_pred HHHHHHHhcCC
Q 004968 656 HVSHFIALDGL 666 (721)
Q Consensus 656 ~v~~~l~~~~~ 666 (721)
+|+..+.+.+.
T Consensus 152 ~I~~~~k~~g~ 162 (383)
T COG0075 152 EIAKAAKEHGA 162 (383)
T ss_pred HHHHHHHHcCC
Confidence 55666665554
No 366
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=30.62 E-value=1.4e+02 Score=28.00 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe------
Q 004968 604 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV------ 677 (721)
Q Consensus 604 ~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g------ 677 (721)
.|++.|++.||+.. -..-++++...+ ...+.||++++.. .+.+..... ....++..++
T Consensus 49 ~a~~~l~~~Gid~s---~h~s~~l~~~~~----~~aDlIi~m~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~ 112 (141)
T cd00115 49 RAIAVLAEHGIDIS---GHRARQLTEDDF----DEFDLIITMDESN--------LAELLEPPP-GGRAKVELLGEYAGDR 112 (141)
T ss_pred HHHHHHHHcCCCcc---cCeeeeCCHHHH----HhCCEEEEECHHH--------HHHHHhcCC-CCcceEEeHhhhCcCC
Confidence 45666788898863 345566666443 3568999998743 111111111 1123556666
Q ss_pred -cCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 678 -LPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 678 -~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++|.|+.. .+.|.-..+.|.+.+.+++
T Consensus 113 ~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 113 EVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 77776542 2223334566666666654
No 367
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=30.59 E-value=1.2e+02 Score=28.35 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCcc
Q 004968 603 LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNY 682 (721)
Q Consensus 603 l~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f 682 (721)
-.|++.|++.||++.--.. +.++.+. ......||+++++.. .+...+ ..........++|.+
T Consensus 41 ~~a~~~l~e~Gid~~~~~~---~~l~~~~----~~~~D~vitm~~~~~-----~~~~~~------p~~~~~~~w~i~DP~ 102 (129)
T TIGR02691 41 PNAVKAMKEVGIDISNQTS---DLIDLDI----LNKADLVVTLCGDAR-----DKCPAT------PPHVKREHWGLDDPA 102 (129)
T ss_pred HHHHHHHHHcCCCcCCccc---ccCChhh----cccCCEEEEeCchhc-----cCCCcc------CCCCeEEECCCCCCC
Confidence 4566778888998642222 3344432 245678999975421 000000 011222345788888
Q ss_pred ccCCCHHHHHHHcCCCHHHHHHHHH
Q 004968 683 IEHASPTQQLALAGLTGHHIAATAL 707 (721)
Q Consensus 683 ~~~g~~~~l~~~~gl~~~~I~~~i~ 707 (721)
...|+.++.++.|--..+.|..++.
T Consensus 103 ~~~g~~~~~~~~~~~~~~~I~~~v~ 127 (129)
T TIGR02691 103 RAEGTEEEKWAVFRRVRDEIKERVK 127 (129)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777555555555554
No 368
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=30.14 E-value=1.9e+02 Score=22.43 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=38.3
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-cCCeEEEEcCCCCCChHH
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~~~~vvvvEe~~~gG~gs 655 (721)
|+|.+. .....|.+|...|++.+++...+|+..-.. -.+.+.+... .+-.++++.+...||+..
T Consensus 2 v~ly~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~~ 66 (72)
T cd02066 2 VVVFSK-STCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYDD 66 (72)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHHH
Confidence 344443 335789999999999999999999875321 1122332222 222456565555788753
No 369
>PTZ00062 glutaredoxin; Provisional
Probab=29.74 E-value=1.9e+02 Score=29.47 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-----cCCeEEEEcCCCCCChHHHH
Q 004968 587 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-----NHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 587 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-----~~~~vvvvEe~~~gG~gs~v 657 (721)
.+.|+|++-|+ ....|..+.+.|++.||+.+.+|+.. |. .+++.++ .+=+.|.+.....||+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~-~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l- 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DP-DLREELKVYSNWPTYPQLYVNGELIGGHDII- 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CH-HHHHHHHHHhCCCCCCeEEECCEEEcChHHH-
Confidence 35677887773 57889999999999999999999863 33 2333221 1224566776667998643
Q ss_pred HHHHHhcCC
Q 004968 658 SHFIALDGL 666 (721)
Q Consensus 658 ~~~l~~~~~ 666 (721)
..+.++|-
T Consensus 186 -~~l~~~G~ 193 (204)
T PTZ00062 186 -KELYESNS 193 (204)
T ss_pred -HHHHHcCC
Confidence 23555554
No 370
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=1.5e+02 Score=25.13 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=39.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH-HHHHHHh-ccCCeEEEEcCCCCCC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI-KLVRELC-QNHTFLITVEEGSIGG 652 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~-e~i~~l~-~~~~~vvvvEe~~~gG 652 (721)
++|.+.= ....|..|.+.|.+.|++.+.+++..-.+-.. +.+.+.- ..+=++|++.+...||
T Consensus 3 v~iyt~~-~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTKP-GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEECC-CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 4444433 36889999999999999999999887554222 3333331 2334667777754444
No 371
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=28.75 E-value=2.4e+02 Score=28.45 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=37.4
Q ss_pred CcEEEEEechhh----HHHHHHHHHHHhC---CCCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 588 KDVALLGYGAMV----QNCLKARALLSKL---GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 588 ~dv~Iva~Gs~v----~~al~Aa~~L~~~---Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
.+++|+++|+.+ ..-..+++.|++. .-.++++|.-+.-+ +.+ ..+...+.+|+|+.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~---~ll-~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL---NLL-GYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH---HHH-HHHcCCCEEEEEEC
Confidence 468999999977 3466778888653 23488999888532 333 33445667777765
No 372
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=28.45 E-value=4.4e+02 Score=27.72 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCc---------cccccHHHHHHHhccCCeEEEEcCCCCCChHHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARF---------CKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~---------l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v 657 (721)
.+.++|..|..-.. +..+.|++. +..+.|+.... +.+|+.+.+.++....+.+|+ .+|++. +
T Consensus 192 ~~~iLv~~gg~~~~--~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs-----~~G~~t-~ 263 (318)
T PF13528_consen 192 EPKILVYFGGGGPG--DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVIS-----KGGYTT-I 263 (318)
T ss_pred CCEEEEEeCCCcHH--HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEE-----CCCHHH-H
Confidence 35566666655433 344444443 46666665443 556776677777777777773 477664 3
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC---------CCHHHHHHHHH
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG---------LTGHHIAATAL 707 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g---------l~~~~I~~~i~ 707 (721)
.+.+.. ..|...+-.+ .+.+.--..+.+++.| ++++.+.+.++
T Consensus 264 ~Ea~~~------g~P~l~ip~~-~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~ 315 (318)
T PF13528_consen 264 SEALAL------GKPALVIPRP-GQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLE 315 (318)
T ss_pred HHHHHc------CCCEEEEeCC-CCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHh
Confidence 333332 3444444332 2334444455566666 34555555544
No 373
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=27.81 E-value=1.9e+02 Score=27.41 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=34.3
Q ss_pred EEEechhh----HHHHHHHHHHHhCCC--CeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 592 LLGYGAMV----QNCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 592 Iva~Gs~v----~~al~Aa~~L~~~Gi--~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
|+++|+.. .....+++.|+++.. .++++|.-+. ..+.+..+.+.++.||+|+.-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 67778766 346677888876543 3778887764 233333445567777777763
No 374
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=27.72 E-value=1.2e+02 Score=28.93 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=37.9
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+|++++|++-+..+..-+ +.+|.++|..+++.+-++- .+.+..+..+.|++.--
T Consensus 27 ~gk~v~VvGrs~~vG~pl--a~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPL--QCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEecC
Confidence 467888887777776554 6678888999999987652 34456667777666543
No 375
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=27.49 E-value=58 Score=30.05 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=34.5
Q ss_pred EEeCCcEEEEEechhhH--HHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEE
Q 004968 584 LVEGKDVALLGYGAMVQ--NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 643 (721)
Q Consensus 584 l~eG~dv~Iva~Gs~v~--~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vv 643 (721)
+..+.+++||++|.... .--++.+.|++.||.+++.|-..- -.+...++.+.++|+
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aA----crTYN~L~~EgRrV~ 112 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEA----VKRYNELAGKGRRVL 112 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHH----HHHHHHHHhCCCeEE
Confidence 44567899999998743 345566688888888776553210 123334555555554
No 376
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=27.12 E-value=1.2e+02 Score=28.10 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHhCCCCeEEeecCccc
Q 004968 596 GAMVQNCLKARALLSKLGIDVTVADARFCK 625 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~ 625 (721)
|+.-..|.+.++.|++.|++++++++....
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 444455666667777789999999988754
No 377
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=26.43 E-value=1.5e+02 Score=27.87 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
.....|.+|.+.|+++||..+++|... .|++.+.+.++++.
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~ 48 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTK 48 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHH
Confidence 456789999999999999999999875 78888888776654
No 378
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=26.05 E-value=2.6e+02 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=36.9
Q ss_pred cEEEEEechhhH----HHHHHHHHHHhC-C--CCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 589 DVALLGYGAMVQ----NCLKARALLSKL-G--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 589 dv~Iva~Gs~v~----~al~Aa~~L~~~-G--i~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
+++|+++|+... .-..+++.|++. . -+++++|.-+.- .+.+. .+..++.+|+|+.-
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~ll~-~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MELLG-DMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHHHH-HHhCCCEEEEEEec
Confidence 478999999773 466788888653 3 358899988753 23332 33456777777753
No 379
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.93 E-value=1.5e+02 Score=28.96 Aligned_cols=42 Identities=26% Similarity=0.140 Sum_probs=31.1
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
++|++.|..-.-++-+|..|.++|++|+|+-+.-...++++.
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 567888889999999999999999999995544444454443
No 380
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.79 E-value=4.7e+02 Score=27.00 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=42.4
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC-------
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG------- 696 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g------- 696 (721)
+-+++.+.+.++.+..+.++..-. ..|++..+.+.++- ..++. +. +.+...++.+...
T Consensus 264 ~g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~------G~pvI--~~-----~~~~~~~~~~~~~~g~~~~~ 328 (377)
T cd03798 264 LGAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMAC------GLPVV--AT-----DVGGIPEIITDGENGLLVPP 328 (377)
T ss_pred eCCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhc------CCCEE--Ee-----cCCChHHHhcCCcceeEECC
Confidence 334667777777776665543221 25666667776653 22332 11 1233344444433
Q ss_pred CCHHHHHHHHHHHhhcch
Q 004968 697 LTGHHIAATALSLLGRTR 714 (721)
Q Consensus 697 l~~~~I~~~i~~~l~~~~ 714 (721)
-+++++++++.+++..+.
T Consensus 329 ~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 GDPEALAEAILRLLADPW 346 (377)
T ss_pred CCHHHHHHHHHHHhcCcH
Confidence 278889999998886543
No 381
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.70 E-value=1e+02 Score=28.04 Aligned_cols=36 Identities=33% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecC
Q 004968 587 GKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 587 G~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
..+++||++|... ..--+..+.|+++||.+++.|-+
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4689999999764 33345567889999999998854
No 382
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.39 E-value=1.6e+02 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
.....|.+|.+.|++.||+.+++|+.. .|++.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHH
Confidence 566889999999999999999999864 78888887776653
No 383
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=25.33 E-value=1.4e+02 Score=26.34 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
+....|.+|.+.|+++||+.+.+|+.. .|++.+.+.++...
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHh
Confidence 456789999999999999999999874 78888888777654
No 384
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=25.15 E-value=1.2e+02 Score=30.04 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred ccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhc-CCCCCCC-ceEEEecCCccccCCCHHHH
Q 004968 627 LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD-GLLDSGV-KWRPIVLPDNYIEHASPTQQ 691 (721)
Q Consensus 627 lD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~-~~~~~~~-~~~~~g~~d~f~~~g~~~~l 691 (721)
.+...+.++.+....+++.+... . -..+++.|.+. +..+.++ -..++|.|++-+.+|+.+|+
T Consensus 146 ~~~~~l~~~~~~~~~~vil~~~~--~-~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~el 209 (210)
T PF00590_consen 146 EREKLLENLLANGDTLVILTDPR--R-LAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEEL 209 (210)
T ss_dssp HHHHHHHHHHTTTSEEEEEESGC--C-HHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHH
T ss_pred chHHHHHHHHhCCCEEEEEccCc--h-HHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHc
Confidence 34556667777778888887765 2 45566666655 1111111 13456778877777776554
No 385
>PHA03050 glutaredoxin; Provisional
Probab=25.04 E-value=3.1e+02 Score=24.71 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=44.0
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCC---CeEEeecCccccccH---HHHHHHh-ccCCeEEEEcCCCCCChHHHH
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGI---DVTVADARFCKPLDI---KLVRELC-QNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi---~v~VId~~~l~PlD~---e~i~~l~-~~~~~vvvvEe~~~gG~gs~v 657 (721)
..+|+|.+.. ....|..|.+.|++.|+ ..+++|+.-..+ +. +.+.+.. +.+=+.|++.....||+....
T Consensus 12 ~~~V~vys~~-~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~ 87 (108)
T PHA03050 12 NNKVTIFVKF-TCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLL 87 (108)
T ss_pred cCCEEEEECC-CChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHH
Confidence 4567777654 46789999999999999 788999874221 22 2333332 223355667766689986543
No 386
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=24.87 E-value=85 Score=30.75 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=35.0
Q ss_pred EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH-------HHHHHHhccCCeEEEE
Q 004968 585 VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI-------KLVRELCQNHTFLITV 645 (721)
Q Consensus 585 ~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~-------e~i~~l~~~~~~vvvv 645 (721)
-.|+.+++++||..-.-+ |..|+..|..|.|.+...++-+.. ..+.+.++..+.+|+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~---A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGI---ARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp -TTSEEEEE--SHHHHHH---HHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred eCCCEEEEeCCCcccHHH---HHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 357889999999887644 566788899999999876554322 2345566666666654
No 387
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.81 E-value=1.1e+02 Score=27.59 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
+....|.+|.+.|+++|+..+.+|+.. .|++.+.+.++++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~ 47 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEK 47 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHH
Confidence 455789999999999999999999875 67788777776554
No 388
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=24.39 E-value=2.5e+02 Score=26.30 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=35.1
Q ss_pred EEEEechhh----HHHHHHHHHHHhCC--CCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 591 ALLGYGAMV----QNCLKARALLSKLG--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 591 ~Iva~Gs~v----~~al~Aa~~L~~~G--i~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
+|+++|+.. ..-..+++.|++.. -+++++|.-+.- .+.+ ..++.++.+|+|+..
T Consensus 1 lViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~viiVDA~ 60 (139)
T cd00518 1 LVLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LELL-DLLEGADRVIIVDAV 60 (139)
T ss_pred CEEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCeEEEEECc
Confidence 367888766 34567788887663 468889888752 2333 333456778888764
No 389
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=24.37 E-value=3e+02 Score=26.49 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=35.0
Q ss_pred cEEEEEechhh----HHHHHHHHHHHhCCC-CeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 589 DVALLGYGAMV----QNCLKARALLSKLGI-DVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs~v----~~al~Aa~~L~~~Gi-~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+++|+++|+.. ..-..+++.|++... +++++|.-+ -|++.-...+. .+.+.+|+|+.
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~~i~~-~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIVAIRE-LRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHHHHHh-cCCCEEEEEEC
Confidence 36788999877 346677778866422 588898888 45443221111 13467777775
No 390
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=24.14 E-value=7.3e+02 Score=24.80 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=56.6
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCC--CCeEEe-ecCcccc-ccHHHHHHHhccCCe---EEEEcC---CCCCChHHH
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLG--IDVTVA-DARFCKP-LDIKLVRELCQNHTF---LITVEE---GSIGGFGSH 656 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~G--i~v~VI-d~~~l~P-lD~e~i~~l~~~~~~---vvvvEe---~~~gG~gs~ 656 (721)
+..+++||.|+.+...+..++.|.+++ -++.++ ..+...- +-.+.+.++.+.+.. .+++.. +..|. ...
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~-~g~ 176 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGR-TGL 176 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccc-ccc
Confidence 468999999999988888777775543 455554 4444321 224556666554332 223332 11121 122
Q ss_pred HHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHH
Q 004968 657 VSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 657 v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~ 703 (721)
|.+.+...........+. ++.|..+.. ...+.++..|++++.|.
T Consensus 177 v~~~l~~~~~~~~~~~v~-vCGp~~m~~--~~~~~l~~~G~~~~~i~ 220 (224)
T cd06189 177 VHEAVLEDFPDLSDFDVY-ACGSPEMVY--AARDDFVEKGLPEENFF 220 (224)
T ss_pred HHHHHHhhccCccccEEE-EECCHHHHH--HHHHHHHHcCCCHHHcc
Confidence 333332221000112233 333555554 34566667788877764
No 391
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.11 E-value=4.9e+02 Score=29.96 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecC----CCC--ccChHHHHHhCCCcE-eeccccHHHHHHHHHHHHhCC-C-eeEE
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAG----MEM--DLSLQLFQEKFPERY-FDVGMAEQHAVTFSAGLACGG-L-KPFC 471 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad----~~~--~~~l~~f~~~fp~R~-~d~GIaE~~~v~~AaGlA~~G-~-~p~~ 471 (721)
.+..+++.+.|...+...-+++-+-+. .+- ..|+..-.+..|++. .--|=.||+|.-.|.+.|..- . |-+.
T Consensus 7 lT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A 86 (617)
T COG3962 7 LTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYA 86 (617)
T ss_pred hHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeE
Confidence 455666666666555443332222111 111 134544444555532 234789999999999999873 3 3333
Q ss_pred Eec--HhhHHHHHHHHHHHhh---cCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEee--------CCHH
Q 004968 472 IIP--SAFLQRAYDQVVNDVD---QQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP--------SDED 537 (721)
Q Consensus 472 ~ty--s~Fl~ra~dqi~~~~a---~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~P--------sd~~ 537 (721)
++. .+.. -.++..++ -+++||.++= ..-+ .-..-|.=|+.++..-.. |---.-+.| .-|+
T Consensus 87 ~tsSiGPGA----~NmvTaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~~-it~NDcfrPVSRYfDRItRPE 160 (617)
T COG3962 87 VTSSIGPGA----ANMVTAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDGT-ITTNDCFRPVSRYFDRITRPE 160 (617)
T ss_pred EecccCCcH----HHHHHHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccCc-eecccccccHHHHhhhcCCHH
Confidence 333 2222 12223333 3689998862 2222 223446667776632111 100011333 3578
Q ss_pred HHHHHHHHHHHh-----CCCCEEEEecCC
Q 004968 538 ELVDMVATVASI-----DDRPVCFRYPRG 561 (721)
Q Consensus 538 E~~~~l~~a~~~-----~~~P~~ir~~r~ 561 (721)
++...+..|++. +-+|+.|-++..
T Consensus 161 Ql~sal~rA~~VmTDPA~~GpvTl~l~QD 189 (617)
T COG3962 161 QLMSALPRAMRVMTDPADCGPVTLALCQD 189 (617)
T ss_pred HHHHHHHHHHHHhCChhhcCceEEEechh
Confidence 899988888873 335888877643
No 392
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=24.10 E-value=2.2e+02 Score=27.30 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=36.8
Q ss_pred CcEEEEEechhh----HHHHHHHHHHHhCC----CCeEEeecCccccccHHHHHH--HhccCCeEEEEcCC
Q 004968 588 KDVALLGYGAMV----QNCLKARALLSKLG----IDVTVADARFCKPLDIKLVRE--LCQNHTFLITVEEG 648 (721)
Q Consensus 588 ~dv~Iva~Gs~v----~~al~Aa~~L~~~G----i~v~VId~~~l~PlD~e~i~~--l~~~~~~vvvvEe~ 648 (721)
++++|+++|+.. ..-..+++.|++.+ -+++++|.-+.-| +.+.. .....+.+|+|+.-
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 468999999977 34667888887432 2488998776433 11111 13466778888763
No 393
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=23.61 E-value=2.3e+02 Score=33.04 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhhhhhc-cCcchHHHHHHHHHHhhcccCCCccceeeee---CceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 282 KSFRQLREVAKGMTKR-IGRGMHEWAAKVDEYARGMIGPQGSTLFEEL---GLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 282 ~~~~~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~---G~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
+.-+++|..++.|... ++..+-++ +++ .++.+.+ |+.|+ ....-.++++..+++-|++. ..
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~l----e~A---------~ElI~~L~~~G~~yv-~fKPGtIeqI~svi~IAka~-P~ 176 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSL----EEA---------VELIEELGDDGFPYV-AFKPGTIEQIRSVIRIAKAN-PT 176 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcH----HHH---------HHHHHHHhhcCceeE-EecCCcHHHHHHHHHHHhcC-CC
Confidence 3456677777766653 22222111 111 2345556 88988 44445799999999999986 46
Q ss_pred CCEEEEEEEeccCCC
Q 004968 358 GPVLVHVVTEENRRA 372 (721)
Q Consensus 358 ~P~lI~v~T~kg~G~ 372 (721)
.|+++++.--++-|+
T Consensus 177 ~pIilq~egGraGGH 191 (717)
T COG4981 177 FPIILQWEGGRAGGH 191 (717)
T ss_pred CceEEEEecCccCCc
Confidence 798888765444444
No 394
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.61 E-value=1.9e+02 Score=30.99 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=36.4
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc----------cccccHHHHHHHhccCCeEEE
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF----------CKPLDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~----------l~PlD~e~i~~l~~~~~~vvv 644 (721)
.|+.+.|+++|.+.. .++..|+..|.++.|++-.. ..+++.+.+.+.+++.+.|+.
T Consensus 150 ~gk~v~IiG~G~iG~---avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGFGRTGM---TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcChHHHH---HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 367899999999665 44566777888888887542 223444445556666665543
No 395
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=23.48 E-value=2e+02 Score=31.57 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=36.6
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH--------HHHHHHhccCCeEEE
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI--------KLVRELCQNHTFLIT 644 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~--------e~i~~l~~~~~~vvv 644 (721)
.|+.|.||++|++-+. .|..|+..|++|.+.+-+ -+..+. ..+.+++++.+.|++
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQM 77 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEEE
Confidence 4678999999999874 356678889999888633 222211 135666767665554
No 396
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=23.14 E-value=4.1e+02 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.5
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|+.++.| .|..++..+++.+.+ .++|++|.
T Consensus 173 n~~V~~P---sd~~e~~~~l~~a~~--~~~P~~i~ 202 (355)
T PTZ00182 173 GLKVVAP---SDPEDAKGLLKAAIR--DPNPVVFF 202 (355)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 5666677 677777888888876 47899875
No 397
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.08 E-value=1.4e+02 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 596 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
-+....|.+|.+.|++.|+..+++|+.. .|+..+.+.++++..
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLL 48 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHc
Confidence 4566889999999999999999999864 678888777766543
No 398
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.07 E-value=1.7e+02 Score=31.34 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=37.9
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEE
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITV 645 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvv 645 (721)
+|++++||+.|..+..-+ +..|.++|..|++.+-++ ..+.+.+++.+.||+.
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEEC
Confidence 467899999999887654 556777899999998765 2355667777766653
No 399
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.74 E-value=3e+02 Score=27.59 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred echhhHHHHHHHHHHHhCCCCeEEeecCcc--ccc----------------c-HHHHHHHhccCCeEEEEcCCCCCChHH
Q 004968 595 YGAMVQNCLKARALLSKLGIDVTVADARFC--KPL----------------D-IKLVRELCQNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 595 ~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l--~Pl----------------D-~e~i~~l~~~~~~vvvvEe~~~gG~gs 655 (721)
+|.+...+..+++.+++.|+++++++++-. +|- | .+.|.+.+...+.+|+.=.-+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 588888888999999999999999999854 331 2 244555555667777655555789998
Q ss_pred HHHHHHHh
Q 004968 656 HVSHFIAL 663 (721)
Q Consensus 656 ~v~~~l~~ 663 (721)
.+..++..
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 88888766
No 400
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=22.72 E-value=4.9e+02 Score=24.93 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD 242 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~ 242 (721)
.++.|.|+|+. |. +++++.... +.. ..++.+.+.+.++
T Consensus 61 ~vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~ 98 (168)
T smart00861 61 MVGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMG 98 (168)
T ss_pred HHHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCccc
Confidence 44566666664 54 666666643 322 6888998888887
No 401
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=22.57 E-value=1.4e+02 Score=33.48 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
++++|+|+++| +.++.+..-=++++ ...|.|..|+...+|+++++- |+-
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~-~R~ 109 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV-NRA 109 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe-ccC
Confidence 67888888888 55566666666665 788999999999999766554 553
No 402
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=22.45 E-value=5.9e+02 Score=23.09 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS 649 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~ 649 (721)
.-..+.+|+-.|.++|. ...+.+.-+-= +.+.+.+.+++.+++|+++-..
T Consensus 12 ~Gqla~~aA~~l~~~~~-~~~~Cla~v~~-~~~~~~~~a~~~~~iIaIDGC~ 61 (110)
T PF08859_consen 12 VGQLANQAAVELTREGP-GEMSCLAGVGA-GVEGLVKSARSARPIIAIDGCP 61 (110)
T ss_pred HhHHHHHHHHHHHHcCC-eeEEechhhhc-CcHHHHHHHhcCCceEEECCCH
Confidence 33678889999988875 44544433322 3456677888888999999654
No 403
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.22 E-value=1.5e+02 Score=24.52 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCC
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGL 666 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~ 666 (721)
..+.|+.|-+.|++.|++++++-. |.+ +-...+..+-++... -+.+.+.+.++++
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~------P~~----i~~~CG~al~~~~~d----~~~i~~~l~~~~i 64 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPT------PRE----ISAGCGLALRFEPED----LEKIKEILEENGI 64 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCC------Chh----ccCCCCEEEEEChhh----HHHHHHHHHHCCC
Confidence 456788899999999999998844 443 233445555555422 2345556665543
No 404
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.15 E-value=2.1e+02 Score=30.78 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=36.1
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc----------ccccHHHHHHHhccCCeEEE
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC----------KPLDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l----------~PlD~e~i~~l~~~~~~vvv 644 (721)
.|+++.|+++|.+... ++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+.||.
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 3678999999985544 55666777889999887632 22233344555566665553
No 405
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=21.79 E-value=1.9e+02 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 604 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 604 ~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
.|++.|++.||++. +.+ +++..+.+ .....||++++.
T Consensus 45 ~a~~~l~~~Gid~~--~~~--~~l~~~~~----~~~DlIv~m~~~ 81 (140)
T smart00226 45 RAVEVLKEHGIALS--HHA--SQLTSSDF----KNADLVLAMDHS 81 (140)
T ss_pred HHHHHHHHcCcCcc--cee--ccCCHHHH----HhCCEEEEeCHH
Confidence 56677788899865 222 26666543 456899999864
No 406
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.52 E-value=2.1e+02 Score=26.78 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
.....|.+|.+.|+++|+..+.+|+.. .|++.+.+.++++.
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 455789999999999999999999864 78888888776654
No 407
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.49 E-value=2.5e+02 Score=24.84 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
++|++||..... .++.|++.++++.+||..
T Consensus 1 vvI~G~g~~~~~---i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGRE---IAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHH---HHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHH---HHHHHHhCCCEEEEEECC
Confidence 578888876654 456677777788888864
No 408
>PRK08105 flavodoxin; Provisional
Probab=21.41 E-value=1.1e+02 Score=29.18 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.3
Q ss_pred EEEechhhHHHHHHHHHH----HhCCCCeEEeecCccc
Q 004968 592 LLGYGAMVQNCLKARALL----SKLGIDVTVADARFCK 625 (721)
Q Consensus 592 Iva~Gs~v~~al~Aa~~L----~~~Gi~v~VId~~~l~ 625 (721)
.|-|||....+.+.|+.| ++.|+++.|+++..+.
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~ 42 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELS 42 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCC
Confidence 466899888877777655 4469999999876543
No 409
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=21.31 E-value=6.6e+02 Score=27.50 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=71.1
Q ss_pred EEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC-CeEEEEcCC-CCCChHHHHHH
Q 004968 582 KVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH-TFLITVEEG-SIGGFGSHVSH 659 (721)
Q Consensus 582 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~-~~vvvvEe~-~~gG~gs~v~~ 659 (721)
..+.+|..+.++.+|.-.+. |+|.++..|++|.++-..+=.-.+-|.|.+-+..| .++|+|=.+ +..|.-+.+.+
T Consensus 87 N~lePgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred hhcCCCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 34567889999999988775 56666778999999976665667778887755444 344444333 33455444333
Q ss_pred HHHhcC-----CC--CCCCceEEEec----CCccc----cCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 660 FIALDG-----LL--DSGVKWRPIVL----PDNYI----EHASPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 660 ~l~~~~-----~~--~~~~~~~~~g~----~d~f~----~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
...+-+ ++ |. +.++|. .|+|+ .+|++..+-.=.||++=.--+++.+.+..
T Consensus 164 ~~g~lc~k~~~lllVD~---VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 164 ISGELCHKHEALLLVDT---VASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred HHHHHhhcCCeEEEEec---hhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 222211 10 10 122222 14443 46777665555666664445555555543
No 410
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=21.19 E-value=2.7e+02 Score=26.40 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEEEechhh----HHHHHHHHHHHhCCC--CeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 590 VALLGYGAMV----QNCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 590 v~Iva~Gs~v----~~al~Aa~~L~~~Gi--~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
++|+++|+.. ..-..+++.|++... .+.++|.-+. |++.-.+.+. .+++.+|+|+.
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~~~~~~-~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFTVAIRE-LRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHHHHHHh-cCCCEEEEEEC
Confidence 3678888876 335567777765432 4778887775 4443211111 13466666665
No 411
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.94 E-value=1.5e+02 Score=29.02 Aligned_cols=51 Identities=27% Similarity=0.464 Sum_probs=34.5
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEE
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvv 644 (721)
+|++++||+-+..+..-+ +.+|.++|..|++.+-.+ +.+.+..+..+.||+
T Consensus 35 ~Gk~v~VvGrs~~VG~Pl--a~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPL--AMLLLNKGATVTICHSKT------KNLQEITRRADIVVS 85 (160)
T ss_dssp TT-EEEEE-TTTTTHHHH--HHHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEEE
T ss_pred CCCEEEEECCcCCCChHH--HHHHHhCCCeEEeccCCC------CcccceeeeccEEee
Confidence 467899999999998765 456888899999988876 234556667666554
No 412
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=20.91 E-value=3.2e+02 Score=25.77 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=32.7
Q ss_pred EEEechhh----HHHHHHHHHHHhCC---CCeEEeecCccccccHHHHHHHhccCCeEEEEcCC
Q 004968 592 LLGYGAMV----QNCLKARALLSKLG---IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648 (721)
Q Consensus 592 Iva~Gs~v----~~al~Aa~~L~~~G---i~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~ 648 (721)
|+++|+.. ..-..+++.|++.. -.++++|..+.- .+.+ ..++.++.+|+|+.-
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~---~~l~-~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG---LELL-DAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhCCCEEEEEEcc
Confidence 67788766 33556777776642 358888887753 2333 333456777777753
No 413
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.29 E-value=1.8e+02 Score=31.49 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=38.1
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
+|+++++|+.|..+..-+ +..|.++|..++|.+-++- .+.+.++..+.||+.-
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsav 210 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVAAV 210 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEec
Confidence 367899999987776555 4567778999999987652 3556666777776654
No 414
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=20.22 E-value=1.1e+02 Score=24.25 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHhH
Q 004968 90 RLKSLTIKELKQLAVEIRSELSSIV 114 (721)
Q Consensus 90 ~~~~~~~~~l~~la~eiR~~~~~~~ 114 (721)
++++++.+||.+...++|+.+...-
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr 25 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELR 25 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999988765
No 415
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=20.11 E-value=5.5e+02 Score=25.35 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc----CC-eEEEEcCCCCCC-hHHHHHH
Q 004968 587 GKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN----HT-FLITVEEGSIGG-FGSHVSH 659 (721)
Q Consensus 587 G~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~----~~-~vvvvEe~~~gG-~gs~v~~ 659 (721)
|+.+.|++-|..+ +.|+-|..+...+.|.-+=|++.++--.-+|.+.+.++. .+ .++++-.+..|| +.++|-
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGslMGGkIteaVk- 161 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSLMGGKITEAVK- 161 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEEecccccchHHHHHH-
Confidence 7789999999888 557777777777888888888888866777777665442 22 223333333444 444443
Q ss_pred HHHhcCCCCCCCceEEEecCC
Q 004968 660 FIALDGLLDSGVKWRPIVLPD 680 (721)
Q Consensus 660 ~l~~~~~~~~~~~~~~~g~~d 680 (721)
.+.+.. ..++.++.++.
T Consensus 162 ~lr~~h----gI~VISL~M~G 178 (218)
T COG1707 162 ELREEH----GIPVISLNMFG 178 (218)
T ss_pred HHHHhc----CCeEEEeccCC
Confidence 344331 35677777643
Done!