Query 004968
Match_columns 721
No_of_seqs 397 out of 2976
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:19:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 7E-116 2E-120 1021.4 52.3 614 76-711 7-623 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1E-114 4E-119 1010.5 49.7 612 75-711 4-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 7E-101 2E-105 889.9 48.3 549 88-707 2-615 (616)
4 3l84_A Transketolase; TKT, str 100.0 2.8E-99 1E-103 874.5 43.9 532 94-708 1-631 (632)
5 3m49_A Transketolase; alpha-be 100.0 1.5E-97 5E-102 866.6 40.3 548 91-710 21-690 (690)
6 3rim_A Transketolase, TK; TPP, 100.0 5.2E-97 2E-101 861.2 43.4 542 96-711 19-699 (700)
7 3kom_A Transketolase; rossmann 100.0 7.9E-97 3E-101 859.1 37.2 542 95-709 2-662 (663)
8 1itz_A Transketolase; calvin c 100.0 6.9E-96 2E-100 856.8 44.4 546 88-708 5-674 (675)
9 3uk1_A Transketolase; structur 100.0 2.1E-96 7E-101 858.6 36.5 536 99-710 45-710 (711)
10 2e6k_A Transketolase; structur 100.0 8.7E-94 3E-98 836.6 37.0 532 100-710 9-651 (651)
11 2r8o_A Transketolase 1, TK 1; 100.0 1.3E-93 4.3E-98 837.5 38.2 539 99-711 4-664 (669)
12 1gpu_A Transketolase; transfer 100.0 4.4E-93 1.5E-97 833.7 41.1 536 98-714 6-668 (680)
13 2qtc_A Pyruvate dehydrogenase 100.0 1.6E-90 5.4E-95 823.4 46.4 602 78-711 56-857 (886)
14 1r9j_A Transketolase; domains, 100.0 7.6E-91 2.6E-95 813.2 41.9 535 98-712 5-657 (673)
15 3ahc_A Phosphoketolase, xylulo 100.0 3.8E-64 1.3E-68 586.5 38.1 527 117-711 81-786 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 6.3E-61 2.1E-65 571.5 43.7 550 92-707 193-930 (933)
17 1ik6_A Pyruvate dehydrogenase; 100.0 3.1E-62 1.1E-66 533.9 24.1 335 365-711 10-368 (369)
18 2ozl_B PDHE1-B, pyruvate dehyd 100.0 6.3E-57 2.2E-61 487.7 28.5 307 399-711 13-340 (341)
19 2yic_A 2-oxoglutarate decarbox 100.0 4.9E-57 1.7E-61 535.4 29.7 542 84-688 107-852 (868)
20 1w85_B Pyruvate dehydrogenase 100.0 9.7E-57 3.3E-61 483.9 28.6 304 401-711 3-323 (324)
21 1umd_B E1-beta, 2-OXO acid deh 100.0 4.7E-56 1.6E-60 478.6 28.0 304 400-711 3-323 (324)
22 2xt6_A 2-oxoglutarate decarbox 100.0 1.8E-56 6.3E-61 542.5 27.8 536 92-688 358-1097(1113)
23 2bfd_B 2-oxoisovalerate dehydr 100.0 1.1E-55 3.9E-60 478.5 24.1 304 400-711 20-341 (342)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 2.6E-54 9E-59 467.6 26.2 301 400-711 4-337 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 3.7E-28 1.3E-32 265.2 25.4 236 91-385 30-283 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 3.1E-25 1.1E-29 241.5 23.4 228 89-376 36-276 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 2.2E-25 7.7E-30 242.1 22.2 231 87-376 24-271 (365)
28 1yd7_A 2-keto acid:ferredoxin 99.9 6.8E-26 2.3E-30 249.6 10.7 284 401-710 23-394 (395)
29 2bfd_A 2-oxoisovalerate dehydr 99.9 3.5E-23 1.2E-27 227.7 24.2 233 87-376 45-295 (400)
30 1qs0_A 2-oxoisovalerate dehydr 99.9 9.2E-23 3.1E-27 224.4 20.0 231 91-377 68-316 (407)
31 2c42_A Pyruvate-ferredoxin oxi 99.8 1.6E-17 5.5E-22 204.6 30.8 253 444-712 55-384 (1231)
32 4feg_A Pyruvate oxidase; carba 99.6 6.5E-16 2.2E-20 179.3 12.7 189 125-387 371-562 (603)
33 3ju3_A Probable 2-oxoacid ferr 99.6 2.4E-15 8.1E-20 137.6 10.1 106 586-711 12-117 (118)
34 2uz1_A Benzaldehyde lyase; thi 99.6 2.4E-14 8.2E-19 164.8 16.2 178 124-369 369-547 (563)
35 3eya_A Pyruvate dehydrogenase 99.5 7E-15 2.4E-19 168.8 9.1 176 125-372 357-533 (549)
36 1ozh_A ALS, acetolactate synth 99.5 4.2E-14 1.4E-18 162.9 14.5 175 125-371 371-546 (566)
37 1ybh_A Acetolactate synthase, 99.5 1.9E-14 6.3E-19 166.7 7.9 141 190-374 424-564 (590)
38 1t9b_A Acetolactate synthase, 99.5 4.8E-14 1.7E-18 165.4 9.2 180 125-374 461-643 (677)
39 2pgn_A Cyclohexane-1,2-dione h 99.4 1.5E-13 5.1E-18 159.0 10.8 179 125-375 375-554 (589)
40 1v5e_A Pyruvate oxidase; oxido 99.4 2.5E-13 8.4E-18 157.2 10.5 130 190-370 411-541 (590)
41 1q6z_A BFD, BFDC, benzoylforma 99.4 2.7E-13 9.3E-18 154.8 10.7 172 125-368 353-525 (528)
42 2iht_A Carboxyethylarginine sy 99.4 2.1E-13 7.3E-18 157.3 9.4 128 190-368 434-561 (573)
43 2vk8_A Pyruvate decarboxylase 99.4 1.9E-13 6.6E-18 157.3 8.7 175 125-369 365-543 (563)
44 1ovm_A Indole-3-pyruvate decar 99.4 5.5E-13 1.9E-17 153.1 11.7 170 125-369 360-533 (552)
45 2pan_A Glyoxylate carboligase; 99.4 9.7E-14 3.3E-18 161.5 5.0 187 125-372 393-584 (616)
46 2vbi_A Pyruvate decarboxylase; 99.4 8.1E-13 2.8E-17 152.2 9.8 125 190-371 407-536 (566)
47 2vbf_A Branched-chain alpha-ke 99.3 1.2E-12 4.2E-17 150.8 9.8 125 190-370 423-553 (570)
48 2q28_A Oxalyl-COA decarboxylas 99.3 8.6E-12 3E-16 143.5 16.7 127 190-370 419-546 (564)
49 2wvg_A PDC, pyruvate decarboxy 99.3 1.7E-12 5.7E-17 149.6 9.7 171 125-371 365-544 (568)
50 2x7j_A 2-succinyl-5-enolpyruvy 99.3 3E-12 1E-16 148.6 11.7 130 190-370 453-582 (604)
51 2c31_A Oxalyl-COA decarboxylas 99.3 9.1E-12 3.1E-16 143.5 13.7 126 190-371 424-550 (568)
52 2nxw_A Phenyl-3-pyruvate decar 99.3 5E-12 1.7E-16 145.6 9.1 123 190-369 420-543 (565)
53 3lq1_A 2-succinyl-5-enolpyruvy 99.2 8.9E-12 3E-16 143.9 9.3 129 194-374 438-566 (578)
54 3hww_A 2-succinyl-5-enolpyruvy 99.2 9.5E-12 3.2E-16 143.0 6.5 125 191-369 416-540 (556)
55 2c42_A Pyruvate-ferredoxin oxi 98.8 9.7E-09 3.3E-13 126.9 9.2 116 214-368 953-1070(1231)
56 1v5e_A Pyruvate oxidase; oxido 92.9 0.11 3.8E-06 59.6 6.5 113 444-562 45-165 (590)
57 2uz1_A Benzaldehyde lyase; thi 92.5 0.75 2.6E-05 52.2 12.6 149 401-561 4-164 (563)
58 1ozh_A ALS, acetolactate synth 92.1 0.68 2.3E-05 52.6 11.7 146 403-561 13-170 (566)
59 1ybh_A Acetolactate synthase, 92.1 0.69 2.4E-05 52.9 11.7 149 402-562 13-173 (590)
60 2vbi_A Pyruvate decarboxylase; 92.0 1.6 5.4E-05 49.5 14.6 150 402-562 4-170 (566)
61 2wvg_A PDC, pyruvate decarboxy 91.9 1.6 5.6E-05 49.5 14.6 115 444-562 43-170 (568)
62 2pan_A Glyoxylate carboligase; 91.2 1.3 4.3E-05 50.9 12.8 149 402-562 28-189 (616)
63 2nxw_A Phenyl-3-pyruvate decar 91.2 1.2 4.2E-05 50.5 12.5 154 400-562 20-187 (565)
64 2iht_A Carboxyethylarginine sy 91.0 0.45 1.5E-05 54.2 8.7 149 401-562 12-172 (573)
65 4feg_A Pyruvate oxidase; carba 91.0 1.3 4.6E-05 50.6 12.7 151 401-562 11-172 (603)
66 1t9b_A Acetolactate synthase, 91.0 1.8 6.1E-05 50.4 13.8 149 401-561 82-242 (677)
67 3eya_A Pyruvate dehydrogenase 90.7 2.1 7.2E-05 48.3 13.8 122 435-562 34-163 (549)
68 2vbf_A Branched-chain alpha-ke 90.0 1.3 4.3E-05 50.4 11.2 150 401-562 25-191 (570)
69 3hww_A 2-succinyl-5-enolpyruvy 87.7 3.5 0.00012 46.6 12.8 147 407-561 10-171 (556)
70 1q6z_A BFD, BFDC, benzoylforma 87.6 0.84 2.9E-05 51.3 7.4 115 444-562 40-162 (528)
71 2pgn_A Cyclohexane-1,2-dione h 87.2 0.56 1.9E-05 53.6 5.7 114 444-562 45-166 (589)
72 3lq1_A 2-succinyl-5-enolpyruvy 86.5 3.7 0.00013 46.6 12.1 147 407-561 13-178 (578)
73 1ovm_A Indole-3-pyruvate decar 85.2 5.2 0.00018 45.0 12.4 151 401-562 5-171 (552)
74 2x7j_A 2-succinyl-5-enolpyruvy 83.8 2.8 9.7E-05 47.9 9.5 123 435-562 62-199 (604)
75 2vk8_A Pyruvate decarboxylase 83.8 4.8 0.00016 45.5 11.3 114 444-562 44-171 (563)
76 2c31_A Oxalyl-COA decarboxylas 83.5 7.5 0.00026 43.9 12.8 151 401-562 10-172 (568)
77 2q28_A Oxalyl-COA decarboxylas 78.6 4.1 0.00014 46.0 8.3 150 401-561 8-169 (564)
78 1w85_A Pyruvate dehydrogenase 77.8 3.2 0.00011 44.5 6.7 101 455-558 147-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 76.4 3.8 0.00013 44.5 6.8 102 456-558 168-283 (400)
80 2r8o_A Transketolase 1, TK 1; 75.7 5.4 0.00018 46.3 8.3 88 468-558 147-243 (669)
81 3ipz_A Monothiol glutaredoxin- 73.9 7.2 0.00025 33.8 6.8 69 587-656 17-90 (109)
82 3m49_A Transketolase; alpha-be 72.7 9 0.00031 44.5 9.2 89 468-559 173-270 (690)
83 1r9j_A Transketolase; domains, 72.2 8.8 0.0003 44.5 8.9 89 468-559 149-247 (673)
84 1qs0_B 2-oxoisovalerate dehydr 72.1 10 0.00035 39.8 8.8 34 329-367 143-176 (338)
85 2wci_A Glutaredoxin-4; redox-a 72.0 6.8 0.00023 35.6 6.4 67 588-655 35-106 (135)
86 1gpu_A Transketolase; transfer 71.4 7.1 0.00024 45.3 7.9 89 468-559 149-247 (680)
87 3kom_A Transketolase; rossmann 70.6 9.2 0.00031 44.3 8.6 89 468-559 149-246 (663)
88 2o1s_A 1-deoxy-D-xylulose-5-ph 69.7 13 0.00044 42.6 9.6 51 196-254 372-423 (621)
89 3zyw_A Glutaredoxin-3; metal b 68.8 9.6 0.00033 33.2 6.5 76 587-665 15-95 (111)
90 1qs0_A 2-oxoisovalerate dehydr 68.7 6.2 0.00021 42.9 6.2 99 457-558 188-303 (407)
91 1umd_A E1-alpha, 2-OXO acid de 68.6 9.6 0.00033 40.7 7.7 108 447-558 142-265 (367)
92 2e6k_A Transketolase; structur 67.9 11 0.00036 43.6 8.4 88 468-559 151-247 (651)
93 1wik_A Thioredoxin-like protei 66.7 7.2 0.00024 33.6 5.2 68 587-655 14-86 (109)
94 2lqo_A Putative glutaredoxin R 65.8 14 0.00049 31.1 6.7 72 588-664 4-82 (92)
95 3l84_A Transketolase; TKT, str 64.4 18 0.00063 41.5 9.4 87 468-559 144-239 (632)
96 2o1x_A 1-deoxy-D-xylulose-5-ph 62.0 15 0.0005 42.3 8.0 32 527-559 252-286 (629)
97 3uk1_A Transketolase; structur 61.4 16 0.00056 42.5 8.3 88 468-559 188-284 (711)
98 1aba_A Glutaredoxin; electron 61.4 18 0.00061 29.5 6.4 59 598-656 13-82 (87)
99 1jl3_A Arsenate reductase; alp 61.3 5.7 0.0002 36.2 3.6 106 590-713 32-138 (139)
100 2ozl_A PDHE1-A type I, pyruvat 60.9 7.4 0.00025 41.6 4.9 101 455-558 145-259 (365)
101 3rim_A Transketolase, TK; TPP, 59.6 27 0.00091 40.6 9.6 88 469-559 170-266 (700)
102 1itz_A Transketolase; calvin c 58.3 21 0.00072 41.3 8.5 89 468-559 160-258 (675)
103 2bfd_B 2-oxoisovalerate dehydr 55.9 25 0.00087 36.9 8.0 33 329-366 159-191 (342)
104 2wem_A Glutaredoxin-related pr 55.1 26 0.0009 30.8 6.8 66 587-656 19-93 (118)
105 3gx8_A Monothiol glutaredoxin- 53.1 20 0.0007 31.6 5.7 66 587-656 15-91 (121)
106 2ozl_B PDHE1-B, pyruvate dehyd 52.1 41 0.0014 35.3 8.9 50 196-254 73-132 (341)
107 1t1v_A SH3BGRL3, SH3 domain-bi 49.7 16 0.00054 30.3 4.2 66 589-656 3-77 (93)
108 1ik6_A Pyruvate dehydrogenase; 47.6 43 0.0015 35.6 8.2 50 196-253 109-168 (369)
109 1w85_B Pyruvate dehydrogenase 46.8 46 0.0016 34.6 8.2 50 196-254 61-120 (324)
110 3mos_A Transketolase, TK; thia 46.5 59 0.002 37.1 9.6 51 197-254 367-417 (616)
111 1fov_A Glutaredoxin 3, GRX3; a 46.3 56 0.0019 25.4 7.0 71 589-662 2-73 (82)
112 2yan_A Glutaredoxin-3; oxidore 44.6 32 0.0011 29.0 5.5 68 588-656 17-89 (105)
113 3rpe_A MDAB, modulator of drug 41.7 79 0.0027 31.0 8.5 59 600-660 47-105 (218)
114 2ct6_A SH3 domain-binding glut 41.6 26 0.00087 30.3 4.4 62 589-655 9-88 (111)
115 3rhb_A ATGRXC5, glutaredoxin-C 39.4 60 0.0021 27.5 6.5 68 588-656 19-90 (113)
116 1umd_B E1-beta, 2-OXO acid deh 39.1 1E+02 0.0035 31.8 9.4 47 196-250 62-118 (324)
117 2vzf_A NADH-dependent FMN redu 38.7 50 0.0017 31.3 6.4 65 598-662 18-93 (197)
118 3qmx_A Glutaredoxin A, glutare 37.8 48 0.0017 27.8 5.5 67 588-656 16-84 (99)
119 3kkj_A Amine oxidase, flavin-c 35.8 25 0.00087 33.1 3.8 32 588-622 3-34 (336)
120 2q62_A ARSH; alpha/beta, flavo 35.7 64 0.0022 32.2 6.9 64 600-663 52-123 (247)
121 1u6t_A SH3 domain-binding glut 34.2 35 0.0012 30.4 4.0 54 602-656 19-81 (121)
122 1sqs_A Conserved hypothetical 32.3 74 0.0025 31.2 6.7 66 598-663 17-104 (242)
123 2a5l_A Trp repressor binding p 32.1 65 0.0022 30.1 6.0 67 596-663 17-96 (200)
124 2ab1_A Hypothetical protein; H 31.5 19 0.00065 32.1 1.9 39 584-622 58-98 (122)
125 3l4e_A Uncharacterized peptida 30.9 1.2E+02 0.0041 29.3 7.7 55 587-644 27-85 (206)
126 3l78_A Regulatory protein SPX; 30.1 86 0.0029 27.4 6.0 41 596-637 7-47 (120)
127 3fwz_A Inner membrane protein 30.1 1E+02 0.0034 27.2 6.6 32 588-622 8-39 (140)
128 3fz4_A Putative arsenate reduc 30.0 72 0.0025 28.0 5.5 42 597-639 11-52 (120)
129 2jgd_A 2-oxoglutarate dehydrog 29.8 76 0.0026 38.1 7.2 109 446-558 318-452 (933)
130 5nul_A Flavodoxin; electron tr 29.4 71 0.0024 28.0 5.5 47 593-646 3-53 (138)
131 1id1_A Putative potassium chan 28.7 1.4E+02 0.0047 26.6 7.4 32 588-622 4-35 (153)
132 3h8q_A Thioredoxin reductase 3 28.4 1.7E+02 0.0058 24.8 7.6 67 587-656 16-87 (114)
133 3u7r_A NADPH-dependent FMN red 28.4 1.2E+02 0.0042 28.8 7.2 61 598-658 17-87 (190)
134 1t0i_A YLR011WP; FMN binding p 28.3 93 0.0032 28.9 6.4 66 598-663 16-109 (191)
135 3llv_A Exopolyphosphatase-rela 28.2 1.2E+02 0.0039 26.6 6.7 33 587-622 6-38 (141)
136 3hly_A Flavodoxin-like domain; 28.1 98 0.0033 28.2 6.3 52 592-646 4-59 (161)
137 3fni_A Putative diflavin flavo 28.0 2.7E+02 0.0092 25.2 9.4 53 591-645 7-63 (159)
138 2fi9_A Outer membrane protein; 27.5 24 0.00082 31.7 1.8 35 588-622 69-104 (128)
139 2fvt_A Conserved hypothetical 27.5 24 0.00083 32.1 1.8 35 588-622 68-103 (135)
140 3f2v_A General stress protein 27.3 1.2E+02 0.0041 28.9 6.9 63 601-663 18-83 (192)
141 1v95_A Nuclear receptor coacti 27.2 1.9E+02 0.0065 25.9 7.7 58 589-647 10-69 (130)
142 2amj_A Modulator of drug activ 26.9 99 0.0034 29.5 6.4 60 601-662 35-94 (204)
143 4dik_A Flavoprotein; TM0755, e 26.9 1.4E+02 0.0048 32.1 8.1 70 592-661 269-342 (410)
144 2fzv_A Putative arsenical resi 26.6 84 0.0029 32.1 5.9 63 600-662 76-147 (279)
145 3rdw_A Putative arsenate reduc 26.6 77 0.0026 27.8 5.0 48 590-639 7-54 (121)
146 3lp6_A Phosphoribosylaminoimid 25.9 1.5E+02 0.0051 28.0 7.0 67 589-659 9-82 (174)
147 2fz5_A Flavodoxin; alpha/beta 25.8 1.2E+02 0.0042 26.1 6.3 65 592-663 3-73 (137)
148 3lyu_A Putative hydrogenase; t 25.7 58 0.002 29.3 4.1 50 587-636 18-68 (142)
149 2qtc_A Pyruvate dehydrogenase 25.7 3.4E+02 0.012 32.3 11.7 25 535-559 365-389 (886)
150 2gm2_A Conserved hypothetical 25.6 23 0.00079 32.0 1.4 37 586-622 63-100 (132)
151 1rw1_A Conserved hypothetical 25.4 58 0.002 28.1 4.0 47 590-638 2-48 (114)
152 3ic4_A Glutaredoxin (GRX-1); s 25.4 1.1E+02 0.0037 24.5 5.5 65 589-654 13-82 (92)
153 3gkx_A Putative ARSC family re 25.4 91 0.0031 27.3 5.2 47 590-638 6-52 (120)
154 1yd7_A 2-keto acid:ferredoxin 24.8 1E+02 0.0034 33.0 6.5 50 196-253 75-124 (395)
155 1y1l_A Arsenate reductase (ARS 24.6 2.1E+02 0.0072 24.9 7.6 81 604-711 43-123 (124)
156 1s3c_A Arsenate reductase; ARS 24.0 81 0.0028 28.5 4.8 46 590-637 4-49 (141)
157 3hr4_A Nitric oxide synthase, 23.7 93 0.0032 30.5 5.4 83 590-680 42-132 (219)
158 2yic_A 2-oxoglutarate decarbox 23.7 1.8E+02 0.006 34.6 8.8 81 475-558 287-380 (868)
159 2khp_A Glutaredoxin; thioredox 23.4 1.6E+02 0.0056 23.4 6.2 65 589-655 7-72 (92)
160 3cpk_A Uncharacterized protein 23.2 36 0.0012 31.6 2.1 36 587-622 88-124 (150)
161 3gx1_A LIN1832 protein; APC633 22.8 4E+02 0.014 23.5 12.0 112 589-713 6-126 (130)
162 2l69_A Rossmann 2X3 fold prote 22.6 1.7E+02 0.0059 24.6 5.9 70 590-665 3-75 (134)
163 3dfz_A SIRC, precorrin-2 dehyd 22.5 1.2E+02 0.0041 29.8 6.0 34 586-622 30-63 (223)
164 1z3e_A Regulatory protein SPX; 22.5 1.7E+02 0.0057 25.9 6.5 47 590-638 3-49 (132)
165 1rtt_A Conserved hypothetical 21.8 70 0.0024 30.0 4.1 59 604-663 28-97 (193)
166 3fvw_A Putative NAD(P)H-depend 21.5 2.3E+02 0.0078 26.6 7.7 62 600-662 20-91 (192)
167 3ors_A N5-carboxyaminoimidazol 21.4 2.4E+02 0.008 26.4 7.3 70 589-660 5-79 (163)
168 2kok_A Arsenate reductase; bru 21.3 84 0.0029 27.3 4.2 49 590-640 7-55 (120)
169 2cwd_A Low molecular weight ph 21.1 97 0.0033 28.6 4.8 101 589-712 37-149 (161)
170 2e85_A Hydrogenase 3 maturatio 20.2 3E+02 0.01 25.2 8.0 57 589-647 5-66 (159)
171 3upl_A Oxidoreductase; rossman 20.0 2.9E+02 0.0098 30.1 8.9 106 587-702 107-220 (446)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=6.6e-116 Score=1021.42 Aligned_cols=614 Identities=35% Similarity=0.552 Sum_probs=532.2
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
..++|+|++|++|.|+|+++.++|+++++++|+.+++++++++||+++++|+|+++.+||++|+.|+|+||||+|||+|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
|++++|+.+.+.++|+++|++|||++.+|+|+.+++|++|+++|+|+|+|+|+++++++++|||++|||++++||+||+|
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
|+|+++++|+++|||||+++ ++++++.++.+++++...+.|..++...+.+.+.+|.++.....++.++++.
T Consensus 167 ~~A~~~~~pli~IvnnN~~~--------i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMS--------ISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBS--------SSBCCSSHHHHC----------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCCC--------CCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 99999999999999999983 4566777777778877788888888777766655555544444555566665
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCC
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNS 393 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g 393 (721)
++.|.+..+||+|||++++++||||+++|.++++++++ .++|++||++|.||+||+++|+ ++.+|||.++| .++
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~~ 314 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEA--DPIYWHGPAKFDPATG 314 (629)
T ss_dssp -----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHH--CTTGGGSCCSBCTTTC
T ss_pred hcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHc--CCcccccCccCCcCcC
Confidence 55443238999999999989999999999999999987 4899999999999999999997 67899999999 555
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 394 LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 394 ~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
...+.+..+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+|++|+++|+|+|++|+|||+++
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 394 (629)
T 2o1x_A 315 EYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI 394 (629)
T ss_dssp CBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEe
Confidence 43222367999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++||++|++|+|++|++.++++|++ .++|
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~P 473 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGP 473 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSSC
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999998999999999999999999999999999999999999999997 4899
Q ss_pred EEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHH
Q 004968 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVR 633 (721)
Q Consensus 554 ~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~ 633 (721)
++||++|+..+..++ .+.+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||++++.
T Consensus 474 v~i~~~r~~~~~~~~--~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~ 547 (629)
T 2o1x_A 474 FAIRYPRGNTAQVPA--GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLR 547 (629)
T ss_dssp EEEECCSSBCCCCCT--TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHH
T ss_pred EEEEecCCCCCCCcc--cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHH
Confidence 999999987543221 2245678999999999999999999999999999999996 8999999999999999999
Q ss_pred HHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 634 ELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 634 ~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++++++.+|||||+. .||||++|++++.++++ +.+++++|+||.|+++|+.+++++++|+|+++|++++++++.
T Consensus 548 ~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~ 623 (629)
T 2o1x_A 548 EVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV 623 (629)
T ss_dssp HHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTC
T ss_pred HHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 9999999999999997 69999999999999875 568999999999999999999999999999999999998763
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-114 Score=1010.48 Aligned_cols=612 Identities=40% Similarity=0.644 Sum_probs=507.7
Q ss_pred CCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHH
Q 004968 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTY 154 (721)
Q Consensus 75 ~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y 154 (721)
+.|.+|+|++|++|.|+|+++.++|+++++++|+.+++++++++||+++++|+++++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 155 AHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 155 ~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
+|++++|+.+++.++|+++|++|||++.+++++.|++|++|+++|+|+|+|+|+++++++++|||++|||++++|++||+
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+++++|+++|||||+++ ++.+++.+..++++++.++.|..++...+.+....+. +.....+..++++
T Consensus 164 L~~A~~~~~pli~vvnnN~~~--------i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~-~~~~~~r~~~~~~ 234 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEMS--------ISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHIK 234 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCcc--------cCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccch-HHHHHHHHHHHhh
Confidence 999999999999999999984 4556666666777777777777766655444322110 0233445556655
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CC
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SN 392 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~ 392 (721)
++..| ..+|++|||++++++||||+++|.++++++++ .++|++||++|.||+||+++|+ ++.+||+.++| .+
T Consensus 235 ~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~ 308 (621)
T 2o1s_A 235 GMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEK--DPITFHAVPKFDPSS 308 (621)
T ss_dssp ----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC-------------------
T ss_pred hccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhc--CchhccCCCCCCCCc
Confidence 55443 57999999999989999999999999999998 4899999999999999999987 67899999999 55
Q ss_pred CCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeE
Q 004968 393 SLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPF 470 (721)
Q Consensus 393 g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~ 470 (721)
|.+.+ ....+|+++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~ 388 (621)
T 2o1s_A 309 GCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPI 388 (621)
T ss_dssp ---------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred CcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEE
Confidence 54322 2357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC
Q 004968 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (721)
Q Consensus 471 ~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~ 550 (721)
+++|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++..
T Consensus 389 ~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~ 468 (621)
T 2o1s_A 389 VAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN 468 (621)
T ss_dssp EEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC
T ss_pred EEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999855
Q ss_pred CCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHH
Q 004968 551 DRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK 630 (721)
Q Consensus 551 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e 630 (721)
++|++||++|+..+..+++. .+.+++||++++++|+|++||++|++++.|++| ++||+++|||++|++|||++
T Consensus 469 ~~Pv~i~~~r~~~~~~~~~~--~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 469 DGPSAVRYPRGNAVGVELTP--LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SSCEEEECCSSBCCCCCCCC--CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCCEEEEeCCCCCCCCCCCc--cccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 89999999998765433332 256789999999999999999999999999999 46999999999999999999
Q ss_pred HHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 631 LVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 631 ~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
++.+++++++.+|||||+. .||||++|++++.++++ +.+++++|+||.|+++|+++++++++|+|+++|+++|+++
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~ 618 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAW 618 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999997 69999999999999875 5689999999999999999999999999999999999987
Q ss_pred hh
Q 004968 710 LG 711 (721)
Q Consensus 710 l~ 711 (721)
+.
T Consensus 619 l~ 620 (621)
T 2o1s_A 619 LA 620 (621)
T ss_dssp HC
T ss_pred hc
Confidence 63
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=6.9e-101 Score=889.87 Aligned_cols=549 Identities=22% Similarity=0.310 Sum_probs=481.7
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhHhcC-CCCCCCcccHHHHHHHHhc-c----cC----CCCcEEEecCCchH---H
Q 004968 88 PLRLKSLTIKELKQLAVEIRSELSSIVSKT-EKSLKSSLAAVELTVALHH-V----FH----APVDKILWDVGEQT---Y 154 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~eiR~~~~~~~~~~-~Gh~~sslg~vel~~aL~~-v----f~----~p~D~iv~d~GH~~---y 154 (721)
..++.+.+.+||+++|++||..+++++++. +||+|++||++|++++||+ + ++ .++|+||||+||++ |
T Consensus 2 ~~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 2 YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 356777889999999999999999999865 5999999999999999984 2 32 34899999999999 8
Q ss_pred HHHHHhCc--hhhhHHHHhhC-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccch
Q 004968 155 AHKILTGR--RSLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQ 230 (721)
Q Consensus 155 ~h~~ltGr--~~~~~~~r~~g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviGDGal~~G~ 230 (721)
+|++++|+ .++|.++||++ +++|||++.++.+| +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|+
T Consensus 82 ~~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~ 160 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGS 160 (616)
T ss_dssp HHHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHH
T ss_pred HHHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCc
Confidence 99999996 78899999998 79999999887777 6999999999999999999987665 59999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||+||+|+++++ ++++|+|||+++ + +.++... . ..
T Consensus 161 ~~Eal~~A~~~~l~~livi~nnN~~~-i-------~~~~~~~-------~---------------------~~------- 197 (616)
T 3mos_A 161 VWEAMAFASIYKLDNLVAILDINRLG-Q-------SDPAPLQ-------H---------------------QM------- 197 (616)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSBC-S-------SSBCTTT-------T---------------------CH-------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCCC-C-------cCCcccc-------c---------------------Ch-------
Confidence 9999999999996 599999999983 2 2221100 0 00
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~ 389 (721)
.++ ..+|++|||+++ +|||||+++|.++++++ .++|++||++|.||+||+.+| ++.+|||.+.
T Consensus 198 ~~~---------~~~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e---~~~~~Hg~~~ 260 (616)
T 3mos_A 198 DIY---------QKRCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE---DKESWHGKPL 260 (616)
T ss_dssp HHH---------HHHHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT---TCSSCTTCCC
T ss_pred HHH---------HHHHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc---CchhhcCCCC
Confidence 011 346899999998 88999999999999654 378999999999999998877 4889999753
Q ss_pred -----------C----CCCCCCC--------------------------CCcccHHHHHHHHHHHHHHcCCCeEEEecCC
Q 004968 390 -----------D----SNSLPFG--------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428 (721)
Q Consensus 390 -----------f----~~g~~~~--------------------------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~ 428 (721)
+ ++++... ....+++++|+++|.+++++||+|+++++||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~ 340 (616)
T 3mos_A 261 PKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDT 340 (616)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 1 2332110 1123567999999999999999999999999
Q ss_pred CCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCC-eeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-c
Q 004968 429 EMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-V 506 (721)
Q Consensus 429 ~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~-~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~ 506 (721)
++++++..|+++||+||||+||+|++|+++|+|+|++|+ +||+++|++|++|++|||++. +++++||+++.+++|+ +
T Consensus 341 ~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~ 419 (616)
T 3mos_A 341 KNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSI 419 (616)
T ss_dssp HHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGG
T ss_pred CCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccc
Confidence 998999999999999999999999999999999999997 799999999999999999876 8999999999999999 8
Q ss_pred CCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEe
Q 004968 507 GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVE 586 (721)
Q Consensus 507 G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~e 586 (721)
|+||+|||+.+|+++|+++||++|++|+|++|+..++++|++ .++|++||++|+..+.. ....+.+++||++++++
T Consensus 420 G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~---~~~~~~~~~Gka~vl~e 495 (616)
T 3mos_A 420 GEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII---YNNNEDFQVGQAKVVLK 495 (616)
T ss_dssp CTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC---SCTTCCCCTTCCEEEEC
T ss_pred cCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc---CCCcccccCCeEEEEEe
Confidence 999999999999999999999999999999999999999986 58999999999864321 12245678999999999
Q ss_pred CCc--EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC-CeEEEEcCCC-CCChHHHHHHHHH
Q 004968 587 GKD--VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH-TFLITVEEGS-IGGFGSHVSHFIA 662 (721)
Q Consensus 587 G~d--v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~-~~vvvvEe~~-~gG~gs~v~~~l~ 662 (721)
|+| ++||+||++++.|++|++.|+++||+++|||+||++|||+++|.++++++ +.||||||+. .||||++|++++.
T Consensus 496 g~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~ 575 (616)
T 3mos_A 496 SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVV 575 (616)
T ss_dssp CSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 976 99999999999999999999999999999999999999999999999888 8999999997 7999999999999
Q ss_pred hcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004968 663 LDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 707 (721)
Q Consensus 663 ~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 707 (721)
+++ +.+++++|+| .|+++|+++++++++|||+++|+++|+
T Consensus 576 ~~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 576 GEP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp TCT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred hcC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 865 4689999998 599999999999999999999999885
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=2.8e-99 Score=874.53 Aligned_cols=532 Identities=18% Similarity=0.214 Sum_probs=462.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC--------CCCcEEEecCCchH---HHHHHHhC
Q 004968 94 LTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH--------APVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~--------~p~D~iv~d~GH~~---y~h~~ltG 161 (721)
|+.++|+++|++||..+++++++ ++||+|+++|++|++++||++|+ .++|+||||+||++ |+|++++|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 56789999999999999999996 89999999999999999988775 25899999999999 99999999
Q ss_pred ch---hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-------CCeEEEEEcCCCcccch
Q 004968 162 RR---SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-------RECIVTVISNGTTMAGQ 230 (721)
Q Consensus 162 r~---~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-------~~~VvaviGDGal~~G~ 230 (721)
++ +++.++||+++. +|||++ +++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 95 789999999985 699999 9999999999999999999999999998764 89999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||||++|+++++ |+|+|+|||+++ ++++++..
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~--------i~~~~~~~-------------------------------------- 193 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNIS--------IEGDVGLA-------------------------------------- 193 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhh--------------------------------------
Confidence 9999999999996 599999999983 33333311
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC-
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA- 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~- 388 (721)
..++...+|++|||+++ ++||||+++|.++|+++++ .++|++||++|.||+|++++|+ ..+|||.+
T Consensus 194 -------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~---~~~~Hg~~l 260 (632)
T 3l84_A 194 -------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG---SHKSHGAPL 260 (632)
T ss_dssp -------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT---CGGGSSSCC
T ss_pred -------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC---cccccCCCC
Confidence 01122457899999999 8999999999999999998 5899999999999999999874 78999986
Q ss_pred ------------------CCC--------------CCCCC---------------------C------------CCcccH
Q 004968 389 ------------------SDS--------------NSLPF---------------------G------------NYSRTY 403 (721)
Q Consensus 389 ------------------~f~--------------~g~~~---------------------~------------~~~~~~ 403 (721)
+|. +|++. + ......
T Consensus 261 ~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~ 340 (632)
T 3l84_A 261 GEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLAT 340 (632)
T ss_dssp CHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCH
T ss_pred CHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHH
Confidence 451 11000 0 123467
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChH-HHHHhC-CCcEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHH
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ-LFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQR 480 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~-~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~r 480 (721)
+++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||+. |++||++||++|++|
T Consensus 341 r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~ 420 (632)
T 3l84_A 341 RDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEY 420 (632)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHH
Confidence 88999999999999999999999998665443 123678 999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 481 AYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.+|++|++ .++|++||++
T Consensus 421 ~~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~ 498 (632)
T 3l84_A 421 LKPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLS 498 (632)
T ss_dssp HHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred HHHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 99998 5789999999999988777 8999999999999999999999999999999999999999997 7899999999
Q ss_pred CCCcccccCCCCCCcceecCce-EEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH--HHH
Q 004968 560 RGAIVRTDLPGYRGIPIEIGKG-KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL--VRE 634 (721)
Q Consensus 560 r~~~~~~~~p~~~~~~~~~gk~-~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~--i~~ 634 (721)
|+.. ++....+..+++++ +++++ |+|++||++|++++.|++|++.|+++||+++|||++|++|||+++ +++
T Consensus 499 r~~~----~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~ 574 (632)
T 3l84_A 499 RQKL----KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQE 574 (632)
T ss_dssp SSCB----CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHH
T ss_pred CCCC----CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHH
Confidence 9875 23222234567776 89999 899999999999999999999999999999999999999999874 555
Q ss_pred HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 635 LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 635 l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
.+.+ +.|||||++...||++.+ . +++|+ |+|+++|+.++|++++|||+++|++++++
T Consensus 575 sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 575 RLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred HhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 5444 678999999877775321 1 67999 99999999999999999999999998853
No 5
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.5e-97 Score=866.60 Aligned_cols=548 Identities=18% Similarity=0.225 Sum_probs=459.6
Q ss_pred cCCCCHHHHHHHH-HHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc-ccC--------CCCcEEEecCCchH---HHH
Q 004968 91 LKSLTIKELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAH 156 (721)
Q Consensus 91 ~~~~~~~~l~~la-~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h 156 (721)
+++++.++|+++| ++||..+++++.+ ++||+|++||++|++++||+ +|+ .++|+||||+||++ |+|
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 6777777899999 8999999999985 89999999999999999995 554 25899999999999 999
Q ss_pred HHHhCc---hhhhHHHHhhCCCC-CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEc
Q 004968 157 KILTGR---RSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVIS 222 (721)
Q Consensus 157 ~~ltGr---~~~~~~~r~~ggl~-G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviG 222 (721)
++|+|+ .+++.++||+|+.. |||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 88999999999855 9999999999999999999999999999999997753 899999999
Q ss_pred CCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcc
Q 004968 223 NGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301 (721)
Q Consensus 223 DGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~ 301 (721)
||++++|++||||++|+++++ |+|+|+|||+++ +++++...
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~------------------------------ 222 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS--------LDGDLNRS------------------------------ 222 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC--------SSSBGGGT------------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCee--------cccchhhc------------------------------
Confidence 999999999999999999995 599999999984 23332210
Q ss_pred hHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccc
Q 004968 302 MHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAI 381 (721)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~ 381 (721)
..++...+|++|||++++++||||+++|.++|+++++. .++|++||++|.||+|+++.| ++
T Consensus 223 ---------------~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~---~~ 283 (690)
T 3m49_A 223 ---------------FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKS---GK 283 (690)
T ss_dssp ---------------CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT---TS
T ss_pred ---------------cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCccc---Cc
Confidence 01122457899999999777999999999999999873 478999999999999998766 48
Q ss_pred ccccccC-------------------CC--CCCC-------------C------------------------------C-
Q 004968 382 EKQQEGA-------------------SD--SNSL-------------P------------------------------F- 396 (721)
Q Consensus 382 ~~~Hg~~-------------------~f--~~g~-------------~------------------------------~- 396 (721)
.+|||.+ +| .++. . .
T Consensus 284 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp 363 (690)
T 3m49_A 284 SASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP 363 (690)
T ss_dssp GGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc
Confidence 8999986 35 1110 0 0
Q ss_pred -------C----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHh-CCCcEeeccccHHHHHHHH
Q 004968 397 -------G----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK-FPERYFDVGMAEQHAVTFS 459 (721)
Q Consensus 397 -------~----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~-fp~R~~d~GIaE~~~v~~A 459 (721)
+ ....+++++++++|.++++++|+++++++|++++++. .+|+++ +|+||||+||+||+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A 443 (690)
T 3m49_A 364 EGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAM 443 (690)
T ss_dssp TTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHH
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHH
Confidence 0 1123678899999999999999999999999876554 467765 5899999999999999999
Q ss_pred HHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH
Q 004968 460 AGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 460 aGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~ 537 (721)
+|||+. |++||++||+.|..++..|| +++|++++||+|+++++|+ +|+||+|||+++|+++||++|||+|++|+|++
T Consensus 444 ~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 444 NGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp HHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999 89999998755554444454 5789999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcceecCceEEEEeCC----cEEEEEechhhHHHHHHHHHHHhC
Q 004968 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEIGKGKVLVEGK----DVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~~~gk~~vl~eG~----dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
|++.+|++|++..++|++||++|+..+....... ..+.+++|+ +++++|+ |++||++|++++.|++|++.|+++
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~ 601 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVD 601 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhc
Confidence 9999999999865899999999987543210000 013566776 7899985 999999999999999999999999
Q ss_pred CCCeEEeecCccccccH---HHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 613 GIDVTVADARFCKPLDI---KLVRELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~---e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
||+++|||+||++|||. +.+.+++ ++++.+|+||++...||. +++...+ ..+|+ |+|+++|+.
T Consensus 602 GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~~ 668 (690)
T 3m49_A 602 GVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAPG 668 (690)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSCH
T ss_pred CCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCCH
Confidence 99999999999999985 4445555 467889999999876664 4444332 35888 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 004968 689 TQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+++++++|||+++|+++|++++
T Consensus 669 ~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 669 EKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHhC
Confidence 9999999999999999998764
No 6
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.2e-97 Score=861.23 Aligned_cols=542 Identities=18% Similarity=0.191 Sum_probs=469.2
Q ss_pred HHHHHHHH-HHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc-ccC-C-------CCcEEEecCCchH---HHHHHHhC
Q 004968 96 IKELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH-A-------PVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 96 ~~~l~~la-~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~-vf~-~-------p~D~iv~d~GH~~---y~h~~ltG 161 (721)
.+||+++| ++||..+++++++ .+||+|+++|++|++.+||+ +|+ . ++|+||||+||++ |+|++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999996 57999999999999999996 775 2 4899999999999 99999999
Q ss_pred c---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-------------CCCCeEEEEEcCC
Q 004968 162 R---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-------------GKRECIVTVISNG 224 (721)
Q Consensus 162 r---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-------------g~~~~VvaviGDG 224 (721)
+ .+++.++||+|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 888999999998 6999999899999999999999999999999999985 5689999999999
Q ss_pred CcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchH
Q 004968 225 TTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (721)
Q Consensus 225 al~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~ 303 (721)
++++|++|||+|+|+++++ |||+|++||+++ ++.+++..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s--------i~~~~~~~-------------------------------- 218 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS--------IEDDTNIA-------------------------------- 218 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhc--------------------------------
Confidence 9999999999999999997 599999999983 33333210
Q ss_pred HHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccc
Q 004968 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEK 383 (721)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~ 383 (721)
...+...+|++|||+++.+.||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+
T Consensus 219 -------------~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~---~~~ 281 (700)
T 3rim_A 219 -------------LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMD---TGK 281 (700)
T ss_dssp -------------CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SHH
T ss_pred -------------cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCC---Ccc
Confidence 00112457899999999533999999999999999873 4899999999999999999985 688
Q ss_pred ccccCC-------------------CC--------------CCC-------------------------------CC---
Q 004968 384 QQEGAS-------------------DS--------------NSL-------------------------------PF--- 396 (721)
Q Consensus 384 ~Hg~~~-------------------f~--------------~g~-------------------------------~~--- 396 (721)
|||.++ |. +|+ ..
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 999753 31 010 00
Q ss_pred ----C-----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHhC------C----CcEeeccccH
Q 004968 397 ----G-----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKF------P----ERYFDVGMAE 452 (721)
Q Consensus 397 ----~-----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~f------p----~R~~d~GIaE 452 (721)
+ ....+++++|+++|.+++++||+++++++|++++++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0 023467899999999999999999999999987765 46788888 9 5999999999
Q ss_pred HHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEE
Q 004968 453 QHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIV 530 (721)
Q Consensus 453 ~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V 530 (721)
|+|+++|+|||+. |++||++||+.|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998888886 6799999999999988877 8999999999999999999999999
Q ss_pred EeeCCHHHHHHHHHHHHHhCC--CCEEEEecCCCcccccCCCCCCcceecCceEEEEeCC--------cEEEEEechhhH
Q 004968 531 MAPSDEDELVDMVATVASIDD--RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGK--------DVALLGYGAMVQ 600 (721)
Q Consensus 531 ~~Psd~~E~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~--------dv~Iva~Gs~v~ 600 (721)
++|+|++|++.+|++|++..+ +|++||++|+..+. ++....+.+++|+ +++++|+ |++||++|++++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~ 597 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGTDAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQ 597 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTCCHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcccccccCCCc-EEEecCCccccCCCCCEEEEEechHHH
Confidence 999999999999999998656 79999999987543 2221135677888 7999997 999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEeecCccccccH---HHHHHHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004968 601 NCLKARALLSKLGIDVTVADARFCKPLDI---KLVRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 676 (721)
Q Consensus 601 ~al~Aa~~L~~~Gi~v~VId~~~l~PlD~---e~i~~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~ 676 (721)
.|++|++.|+++||+++|||+||++|||. +.+.+++++ ++.+|+||++...||. +++.+++ +.+
T Consensus 598 ~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~~i 665 (700)
T 3rim_A 598 LAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------EIV 665 (700)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------EEE
T ss_pred HHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------cEE
Confidence 99999999999999999999999999999 455566664 7889999999876664 4444332 578
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 677 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 677 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
|+ |+|++||+.++|++++|||+++|+++|+++++
T Consensus 666 gi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 666 SI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp CC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred cc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 98 99999999999999999999999999998874
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=7.9e-97 Score=859.12 Aligned_cols=542 Identities=16% Similarity=0.189 Sum_probs=459.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccCC------CCcEEEecCCchH---HHHHHHhC
Q 004968 95 TIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 95 ~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltG 161 (721)
|++.++++|++||..+++++++ ++||+|++||++|++++|| +.||+ ++|+||||+||++ |++++++|
T Consensus 2 ~~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 81 (663)
T 3kom_A 2 SLSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTG 81 (663)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhC
Confidence 3445688999999999999986 8999999999999999995 45764 6899999999999 99999999
Q ss_pred ch---hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcc
Q 004968 162 RR---SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTM 227 (721)
Q Consensus 162 r~---~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~ 227 (721)
++ +++.++||+++ ++|||++...++..+++|++|+++|+|+|+|+|.++++. +++|||++|||+++
T Consensus 82 ~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 82 YDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp CSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred CCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 94 78999999998 469999888899999999999999999999999998764 79999999999999
Q ss_pred cchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHH
Q 004968 228 AGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWA 306 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 306 (721)
+|++||||++|+++++| +|+|+|||+++ ++.+++..
T Consensus 162 eG~~~Eal~~A~~~~L~~livi~dnN~~~--------i~~~~~~~----------------------------------- 198 (663)
T 3kom_A 162 EGVSHEACSLAGTLGLNKLVAFWDDNNIS--------IDGDTKGW----------------------------------- 198 (663)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEECC-------------CGGGT-----------------------------------
T ss_pred hchHHHHHHHHHHhCCCeEEEEEECCCcc--------cccchhhh-----------------------------------
Confidence 99999999999999965 99999999984 23333311
Q ss_pred HHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccc
Q 004968 307 AKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQE 386 (721)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg 386 (721)
..++...+|++|||++++++||||+++|.++|+++++. .++|++||++|.||+|++++|+ ..+|||
T Consensus 199 ----------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~---~~~~Hg 264 (663)
T 3kom_A 199 ----------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAG---TASVHG 264 (663)
T ss_dssp ----------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTT---CSSTTS
T ss_pred ----------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCC---CccccC
Confidence 01222457899999999899999999999999999873 3789999999999999999874 789999
Q ss_pred cC------------------CCC--C-----------CCC----------------------------CC----------
Q 004968 387 GA------------------SDS--N-----------SLP----------------------------FG---------- 397 (721)
Q Consensus 387 ~~------------------~f~--~-----------g~~----------------------------~~---------- 397 (721)
.+ ||. + |+. .+
T Consensus 265 ~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~ 344 (663)
T 3kom_A 265 SPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDY 344 (663)
T ss_dssp SCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhh
Confidence 74 451 1 100 00
Q ss_pred -------CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHH-HhCCCcEeeccccHHHHHHHHHHHHh
Q 004968 398 -------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLAC 464 (721)
Q Consensus 398 -------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~ 464 (721)
.+..+++++++++|.++++++|+++++++|++++++. .+|+ ++||+||||+||+|++|+++|+|||+
T Consensus 345 ~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~ 424 (663)
T 3kom_A 345 IASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSL 424 (663)
T ss_dssp HHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHH
T ss_pred hhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHH
Confidence 1234678899999999999999999999999876543 3574 89999999999999999999999999
Q ss_pred C-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHH
Q 004968 465 G-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDM 542 (721)
Q Consensus 465 ~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~ 542 (721)
. |++||++||++|++++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|++.+
T Consensus 425 ~gG~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~ 503 (663)
T 3kom_A 425 YGGIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIA 503 (663)
T ss_dssp HSSCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHH
T ss_pred cCCCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHH
Confidence 9 99999999999999999998 5789999999999987777 8999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCCeEE
Q 004968 543 VATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618 (721)
Q Consensus 543 l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~V 618 (721)
+++|++..++|++||++|+..+. ++.... +.++.| .+++++ |+|++||++|++++.|++|++.|+++||+++|
T Consensus 504 l~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~V 580 (663)
T 3kom_A 504 WKEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNV 580 (663)
T ss_dssp HHHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHhCCCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEE
Confidence 99999767899999999987542 121100 234455 477888 79999999999999999999999999999999
Q ss_pred eecCccccccHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHc
Q 004968 619 ADARFCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 695 (721)
Q Consensus 619 Id~~~l~PlD~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~ 695 (721)
||++|++|||+++ +.+++++...+|++|++...||.+.+. | ..-..+|+ |+|+.+|+.+++++++
T Consensus 581 i~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~g------G-----~~~~~igi-d~Fg~sg~~~~l~~~~ 648 (663)
T 3kom_A 581 ASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYMP------K-----AGGEVKGI-YSFGESAPAEDLFKRF 648 (663)
T ss_dssp EECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGCC------T-----TCEEEECC-CSCCCSSCHHHHHHHH
T ss_pred EEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHhc------c-----cCCcEEEe-cCCcCCCCHHHHHHHH
Confidence 9999999999987 344556666789999998878875431 1 22367898 9999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 004968 696 GLTGHHIAATALSL 709 (721)
Q Consensus 696 gl~~~~I~~~i~~~ 709 (721)
|||+++|+++++++
T Consensus 649 Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 649 GFTVENISNIVAKY 662 (663)
T ss_dssp TCSHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999999764
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=6.9e-96 Score=856.78 Aligned_cols=546 Identities=21% Similarity=0.239 Sum_probs=473.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccC------CCCcEEEecCCchH---H
Q 004968 88 PLRLKSLTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---Y 154 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y 154 (721)
|.+.|+|+.++|+++|++||..+++++++ ++||+|+++|++|++++|| ++|| .++|+||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 55689999999999999999999999997 8999999999999999999 4676 35899999999999 9
Q ss_pred HHHHHhCch----hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEE
Q 004968 155 AHKILTGRR----SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVT 219 (721)
Q Consensus 155 ~h~~ltGr~----~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~Vva 219 (721)
+|++++|+. +++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ ++++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999996 789999999985 8999998999999999999999999999999998876 7899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
++|||++++|++||||++|+++++ |+|+|+|||+++ ++.+++.. +
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~---~----------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS--------IDGDTEIA---F----------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---C-----------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCcc--------CCCChhhh---c-----------------------
Confidence 999999999999999999999995 899999999983 23333210 0
Q ss_pred CcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccc
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~ 377 (721)
..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++++|.
T Consensus 211 -------------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~ 270 (675)
T 1itz_A 211 -------------------TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKAN 270 (675)
T ss_dssp -------------------CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT
T ss_pred -------------------ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCcccccC
Confidence 1122457899999999899999 999999999999873 4789999999999999999874
Q ss_pred cccccccccc------------------CCCC--CC------------CC------------------------------
Q 004968 378 SEAIEKQQEG------------------ASDS--NS------------LP------------------------------ 395 (721)
Q Consensus 378 ~~~~~~~Hg~------------------~~f~--~g------------~~------------------------------ 395 (721)
+.+|||. .+|. ++ +.
T Consensus 271 ---~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (675)
T 1itz_A 271 ---SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGE 347 (675)
T ss_dssp ---SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC
T ss_pred ---cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhccc
Confidence 7899997 3451 11 00
Q ss_pred -------------CCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH-hCCCcEeeccccHHHHH
Q 004968 396 -------------FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAV 456 (721)
Q Consensus 396 -------------~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~fp~R~~d~GIaE~~~v 456 (721)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+
T Consensus 348 ~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v 427 (675)
T 1itz_A 348 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMG 427 (675)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHH
T ss_pred CCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHH
Confidence 001335789999999999999999999999999876554 34887 99999999999999999
Q ss_pred HHHHHHHhCC--CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEee
Q 004968 457 TFSAGLACGG--LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (721)
Q Consensus 457 ~~AaGlA~~G--~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~P 533 (721)
++|+|||+.| ++||++||++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|
T Consensus 428 ~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~P 506 (675)
T 1itz_A 428 AICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRP 506 (675)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECC
T ss_pred HHHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEEC
Confidence 9999999999 9999999999999999997 5689999999999987777 7899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCc-ceecCceEEEEe---C--CcEEEEEechhhHHHHHHHH
Q 004968 534 SDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEIGKGKVLVE---G--KDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 534 sd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~-~~~~gk~~vl~e---G--~dv~Iva~Gs~v~~al~Aa~ 607 (721)
+|++|++.+|++|++..++|++||++|+..+. ++. +.+ .+++| ++++++ | +|++||++|++++.|++|++
T Consensus 507 ad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~-~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~ 582 (675)
T 1itz_A 507 ADGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG-TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAAD 582 (675)
T ss_dssp CSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT-CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC-ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHH
Confidence 99999999999999755899999999987543 222 123 46778 688888 8 89999999999999999999
Q ss_pred HHHhCCCCeEEeecCccccccHHH---HHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccc
Q 004968 608 LLSKLGIDVTVADARFCKPLDIKL---VRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYI 683 (721)
Q Consensus 608 ~L~~~Gi~v~VId~~~l~PlD~e~---i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~ 683 (721)
.|+++||+++|||++|++|||++. +.++++++ +.+||||++..+||++.+ . .+.+++|+ |.|+
T Consensus 583 ~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~----~--------~~~~~ig~-d~fg 649 (675)
T 1itz_A 583 ELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV----G--------AQGKAIGI-DKFG 649 (675)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH----C--------SSCEEECC-CSCC
T ss_pred HHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc----C--------CCceEEEe-CCCC
Confidence 999999999999999999999884 67777775 789999999888998643 1 13468999 9999
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 684 EHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 684 ~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
.+|+.+++++++|||+++|++++++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 9999999999999999999999864
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.1e-96 Score=858.59 Aligned_cols=536 Identities=19% Similarity=0.226 Sum_probs=444.1
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccCC------CCcEEEecCCchH---HHHHHHhCch--
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTGRR-- 163 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltGr~-- 163 (721)
.+++|++||..+++++++ ++||+|+++|++|++++|| +.||+ ++|+||||+||++ |+|++++|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 466999999999999986 8999999999999999996 45764 5899999999999 9999999994
Q ss_pred -hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchH
Q 004968 164 -SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (721)
Q Consensus 164 -~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G~~ 231 (721)
+++.++||+++ ++|||+....+...+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 78999999998 579998777788889999999999999999999997764 789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
||+|++|+++++| +|+|+|||+++ ++.+++..
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~--------------------------------------- 237 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGIS--------IDGDVVNW--------------------------------------- 237 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcc--------cccchhhh---------------------------------------
Confidence 9999999999975 99999999983 33333311
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC--
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA-- 388 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~-- 388 (721)
..++...+|++|||++++++||||+++|.++|+++++ .++|++||++|.||+|++++| ++.+|||.+
T Consensus 238 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e---~~~~~Hg~~l~ 306 (711)
T 3uk1_A 238 ------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA---GGHDVHGAPLG 306 (711)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC-----------------------C
T ss_pred ------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC---CcccccCCCCC
Confidence 0112245789999999987999999999999999987 589999999999999998776 478999974
Q ss_pred ----------------CCC--C-----------CCC------------------------------CC------------
Q 004968 389 ----------------SDS--N-----------SLP------------------------------FG------------ 397 (721)
Q Consensus 389 ----------------~f~--~-----------g~~------------------------------~~------------ 397 (721)
||. + |+. .+
T Consensus 307 ~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~ 386 (711)
T 3uk1_A 307 ADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVA 386 (711)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhh
Confidence 451 1 110 00
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHh---CC---CcEeeccccHHHHHHHHHH
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK---FP---ERYFDVGMAEQHAVTFSAG 461 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~---fp---~R~~d~GIaE~~~v~~AaG 461 (721)
....+++++++++|.++++++|+++++++|+++++++ ..|+++ || +||||+||+|++|+++|+|
T Consensus 387 ~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaG 466 (711)
T 3uk1_A 387 GANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAING 466 (711)
T ss_dssp HHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHH
Confidence 1223567888899999999999999999999876543 478888 99 9999999999999999999
Q ss_pred HHh-CCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHH
Q 004968 462 LAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL 539 (721)
Q Consensus 462 lA~-~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~ 539 (721)
||+ .|++||+++|++|++|+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|+
T Consensus 467 lA~~~G~~Pv~~~f~~F~~~~~~~i-r~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 467 LVLHGGYKPFGGTFLTFSDYSRNAL-RVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545 (711)
T ss_dssp HHHHSSCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred HHHcCCCEEEEEEhHHHHHHHHHHH-HHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHH
Confidence 999 599999999999999999998 5689999999999988877 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCcccccCCCCC--CcceecCceEEEEe--C----CcEEEEEechhhHHHHHHHHHHHh
Q 004968 540 VDMVATVASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEIGKGKVLVE--G----KDVALLGYGAMVQNCLKARALLSK 611 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~--~~~~~~gk~~vl~e--G----~dv~Iva~Gs~v~~al~Aa~~L~~ 611 (721)
+.+|++|++ .++|++||++|+..+. ++... .+.++.|+ +++++ | +|++||++|++++.|++|++.|++
T Consensus 546 ~~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~ 621 (711)
T 3uk1_A 546 AVAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQ 621 (711)
T ss_dssp HHHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHH
Confidence 999999997 7899999999987543 22111 13566776 57775 7 799999999999999999999999
Q ss_pred CCCCeEEeecCccccccHHH--HHH-HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 612 LGIDVTVADARFCKPLDIKL--VRE-LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 612 ~Gi~v~VId~~~l~PlD~e~--i~~-l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
+||+++|||++|++|||++. +++ +.++...+|++|++..+||++++ .. +.+++|+ |+|+.+|+.
T Consensus 622 ~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g~--------~~~~iGi-d~Fg~sg~~ 688 (711)
T 3uk1_A 622 QGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----GL--------EGGVVGI-DTFGESAPA 688 (711)
T ss_dssp TTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----TT--------TSEEECC-CSCCCSSCH
T ss_pred cCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----CC--------CceEEEe-CCCcCcCCH
Confidence 99999999999999999886 344 44555569999999988897654 21 2357998 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 004968 689 TQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++|+++||||+++|++++++++
T Consensus 689 ~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 689 GVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=8.7e-94 Score=836.56 Aligned_cols=532 Identities=20% Similarity=0.219 Sum_probs=463.1
Q ss_pred HHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccC------CCCcEEEecCCchH---HHHHHHhCc---h
Q 004968 100 KQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---YAHKILTGR---R 163 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y~h~~ltGr---~ 163 (721)
+++|++||..+++++++ ++||+|+++|+++++++|| ++|| .++|+||||+||++ |+|++++|+ .
T Consensus 9 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 9 TLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 35899999999999997 8999999999999999999 4566 35899999999999 999999999 8
Q ss_pred hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 004968 164 SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (721)
Q Consensus 164 ~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~ 232 (721)
+++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++|
T Consensus 89 ~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ 168 (651)
T 2e6k_A 89 EELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSG 168 (651)
T ss_dssp HHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHH
Confidence 899999999985 8999998899999999999999999999999998776 68999999999999999999
Q ss_pred HHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 233 EAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 233 Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
|+||+|+.+++| +|+|+|||+++ ++.+++.. +
T Consensus 169 Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~---~------------------------------------ 201 (651)
T 2e6k_A 169 EAASLAGHWGLSKLIVFWDDNRIS--------IDGPTDLA---F------------------------------------ 201 (651)
T ss_dssp HHHHHHHHTTCTTEEEEEEECCEE--------TTEEGGGT---C------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEEECCCcc--------cccccccc---c------------------------------------
Confidence 999999999965 99999999983 23333210 0
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC---
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA--- 388 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~--- 388 (721)
..+...+|++|||++++++||||+++|.++++++++ .++|++||++|.||+|++ .+ ++.+||+.+
T Consensus 202 ------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~~---~~~~~H~~~~~~ 269 (651)
T 2e6k_A 202 ------TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-KQ---DSAKAHGEPLGP 269 (651)
T ss_dssp ------CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-TT---TSGGGTSSCCHH
T ss_pred ------CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-cc---ccccccccCCCH
Confidence 112245789999999989999999999999999987 589999999999999998 55 578999875
Q ss_pred ---------------CC--CCC------C-----------------------------------CCC---------CCcc
Q 004968 389 ---------------SD--SNS------L-----------------------------------PFG---------NYSR 401 (721)
Q Consensus 389 ---------------~f--~~g------~-----------------------------------~~~---------~~~~ 401 (721)
+| .++ + ..+ ....
T Consensus 270 ~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 349 (651)
T 2e6k_A 270 EAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPI 349 (651)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCB
T ss_pred HHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccH
Confidence 45 111 0 000 0145
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH-hCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP 474 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty 474 (721)
+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|+|+.| ++||++||
T Consensus 350 ~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~ 429 (651)
T 2e6k_A 350 ATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTF 429 (651)
T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeH
Confidence 789999999999999999999999999877654 45887 999999999999999999999999998 99999999
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|++++|++||++|++|+|++|++.++++|++..++|
T Consensus 430 ~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~P 508 (651)
T 2e6k_A 430 LVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGP 508 (651)
T ss_dssp GGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99998888986 6789999999999977777 799999999999999999999999999999999999999999855899
Q ss_pred EEEEecCCCcccccCCCCCCcceecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 554 ~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
++||++|+..+. ++......++.| ++++++| +|++||++|++++.|++|++.|+++||+++|||++|++|||++.
T Consensus 509 v~i~~~r~~~~~--~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~ 585 (651)
T 2e6k_A 509 TALVLTRQAVPL--LSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQP 585 (651)
T ss_dssp EEEECCSSCBCC--CCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSC
T ss_pred EEEEEeCCCCCC--CCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCcccccc
Confidence 999999987542 221111135566 5788988 89999999999999999999999999999999999999999984
Q ss_pred ---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 632 ---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 632 ---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
+.+++++++.+||||++..+||++++ + +++|+ |.|+++|+.+++++++|||+++|++++++
T Consensus 586 ~~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~~ 649 (651)
T 2e6k_A 586 EAYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFLS 649 (651)
T ss_dssp HHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777789999999888887543 2 67999 99999999999999999999999999986
Q ss_pred Hh
Q 004968 709 LL 710 (721)
Q Consensus 709 ~l 710 (721)
++
T Consensus 650 ~l 651 (651)
T 2e6k_A 650 LV 651 (651)
T ss_dssp TC
T ss_pred hC
Confidence 53
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.3e-93 Score=837.55 Aligned_cols=539 Identities=18% Similarity=0.220 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc---ccCC------CCcEEEecCCchH---HHHHHHhCc---
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH---VFHA------PVDKILWDVGEQT---YAHKILTGR--- 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~---vf~~------p~D~iv~d~GH~~---y~h~~ltGr--- 162 (721)
|+++|++||..+++++++ ++||+|+++|+++++++||+ .||+ ++|+||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 678999999999999996 89999999999999999994 4663 5899999999999 999999999
Q ss_pred hhhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 004968 163 RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 163 ~~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~ 231 (721)
.+++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8899999999985 8999988899999999999999999999999998765 4889999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||||+|+.+++| +|+|+|||+++ ++.+++..
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~--------------------------------------- 196 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGIS--------IDGHVEGW--------------------------------------- 196 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcE--------eccccccc---------------------------------------
Confidence 9999999999965 99999999983 22232200
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc---
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG--- 387 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~--- 387 (721)
+..+...+|++|||++++++||||+++|.++++++++. .++|++||++|.||+|+++.+ +..+||+.
T Consensus 197 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~---~~~~~H~~~~~ 266 (669)
T 2r8o_A 197 ------FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKA---GTHDSHGAPLG 266 (669)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT---TSGGGTSSCCC
T ss_pred ------cCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcC---CCCcccCCCCC
Confidence 00122457899999999899999999999999999873 478999999999999999866 47899987
Q ss_pred ---------------CCC--CCC-----------C------------------------------CC-------------
Q 004968 388 ---------------ASD--SNS-----------L------------------------------PF------------- 396 (721)
Q Consensus 388 ---------------~~f--~~g-----------~------------------------------~~------------- 396 (721)
.+| .++ + .+
T Consensus 267 ~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~ 346 (669)
T 2r8o_A 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIA 346 (669)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhh
Confidence 344 110 0 00
Q ss_pred ----CCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-C
Q 004968 397 ----GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-G 466 (721)
Q Consensus 397 ----~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G 466 (721)
..+..+++++++++|.++++.+|+++++++|+++++++ ..|+++||+||||+||+|++|+++|+|||+. |
T Consensus 347 ~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG 426 (669)
T 2r8o_A 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG 426 (669)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS
T ss_pred hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCC
Confidence 01234678899999999999999999999999876554 4789999999999999999999999999999 8
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||+++|++|+.++++||+ ++|++++||++++++.|+ +|+||+|||+.+|++++|++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~ 505 (669)
T 2r8o_A 427 FLPYTSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (669)
T ss_dssp CEEEEEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHH
Confidence 99999999999999999985 589999999999988777 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEEe--C-CcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLVE--G-KDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~e--G-~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
|++..++|++||++|+..+. ++.... ..+++| .+++++ | +|++||++|++++.|++|++.|+++||+++|||
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~ 582 (669)
T 2r8o_A 506 GVERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVS 582 (669)
T ss_dssp HHHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99855899999999987542 232110 125677 478888 8 899999999999999999999999999999999
Q ss_pred cCccccccHHH---HHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKL---VRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~---i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++. +.++++++ +.+|+||++..+||++ ++.+++ ..+|+ |.|+.+|+++++++++|
T Consensus 583 ~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~G 649 (669)
T 2r8o_A 583 MPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEFG 649 (669)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHTT
T ss_pred eccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHhC
Confidence 99999999884 77777774 7899999998888985 333322 46888 79999999999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 004968 697 LTGHHIAATALSLLG 711 (721)
Q Consensus 697 l~~~~I~~~i~~~l~ 711 (721)
||+++|++++++++-
T Consensus 650 l~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 650 FTVDNVVAKAKELLH 664 (669)
T ss_dssp CSHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999874
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=4.4e-93 Score=833.70 Aligned_cols=536 Identities=18% Similarity=0.204 Sum_probs=463.7
Q ss_pred HHHH-HHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc--ccCC------CCcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQ-LAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH--VFHA------PVDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~-la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~--vf~~------p~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
+|++ +|++||..+++++++ ++||+|+++|++|++++||+ +||+ ++|+||||+||++ |+|++++|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 7888 999999999999997 89999999999999999997 7874 5899999999999 999999999
Q ss_pred -hhhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~ 230 (721)
.+++.++||+++. +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 8899999999985 899999 899999999999999999999999998775 488999999999999999
Q ss_pred HHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||+||+|+.+++| +|+|+|||+++ ++.+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~-------------------------------------- 198 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKIT--------IDGATSIS-------------------------------------- 198 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCce--------Eecccccc--------------------------------------
Confidence 99999999999965 99999999983 22222200
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
+..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++ .+ +..+||+..
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (680)
T 1gpu_A 199 -------FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA---GSHSVHGAP 266 (680)
T ss_dssp -------CCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT---TSGGGSSSC
T ss_pred -------cCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC---CCCccCCCC
Confidence 01122457899999999899999 999999999999873 478999999999999998 44 467899875
Q ss_pred -------------------CC--CCC-------------CC---------------------------------------
Q 004968 389 -------------------SD--SNS-------------LP--------------------------------------- 395 (721)
Q Consensus 389 -------------------~f--~~g-------------~~--------------------------------------- 395 (721)
+| .++ +.
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~ 346 (680)
T 1gpu_A 267 LKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKL 346 (680)
T ss_dssp CCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGS
T ss_pred CCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhc
Confidence 44 111 00
Q ss_pred ----CCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH------hCCCcEeeccccHHHHHHHHH
Q 004968 396 ----FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE------KFPERYFDVGMAEQHAVTFSA 460 (721)
Q Consensus 396 ----~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~------~fp~R~~d~GIaE~~~v~~Aa 460 (721)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~ 426 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHH
Confidence 001235688999999999999999999999999876543 46887 999999999999999999999
Q ss_pred HHHhCC-Ce-eEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH
Q 004968 461 GLACGG-LK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 461 GlA~~G-~~-p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~ 537 (721)
|||+.| ++ ||+++|++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++||++||++|++|+|++
T Consensus 427 GlA~~Gg~~~P~~~~f~~F~~~~~~ai-r~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~ 505 (680)
T 1gpu_A 427 GISAFGANYKPYGGTFLNFVSYAAGAV-RLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGN 505 (680)
T ss_dssp HHHHHCTTCEEEEEEEHHHHGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHH
T ss_pred HHHhcCCCceEEEeehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHH
Confidence 999998 99 99999999999999997 5689999999999988777 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcc-eecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCC
Q 004968 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIP-IEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGI 614 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi 614 (721)
|++.+|++|++..++|++||++|+..+. ++.. .+. +++| ++++++| +|++||++|++++.|++|++.|+++||
T Consensus 506 e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi 581 (680)
T 1gpu_A 506 EVSAAYKNSLESKHTPSIIALSRQNLPQ--LEGS-SIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNI 581 (680)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSCBCC--CTTC-CHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC--CCCc-chhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 9999999999755899999999987543 2222 233 6677 4889998 899999999999999999999999999
Q ss_pred CeEEeecCccccccHH---HHHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHH
Q 004968 615 DVTVADARFCKPLDIK---LVRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQ 690 (721)
Q Consensus 615 ~v~VId~~~l~PlD~e---~i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~ 690 (721)
+++|||++|++|||++ .+.++++++ +. |+||++..+||+++| + .. +++ |.|+.+|+.++
T Consensus 582 ~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v-------~-------~~-~gv-~~f~~~g~~~~ 644 (680)
T 1gpu_A 582 KARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA-------H-------QS-FGI-DRFGASGKAPE 644 (680)
T ss_dssp CEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC-------S-------EE-ECC-CSCCCCSCHHH
T ss_pred CEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc-------C-------cc-eee-CcCCCCCCHHH
Confidence 9999999999999998 466666664 55 999999888887543 1 12 787 89999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcch
Q 004968 691 QLALAGLTGHHIAATALSLLGRTR 714 (721)
Q Consensus 691 l~~~~gl~~~~I~~~i~~~l~~~~ 714 (721)
+++++|+|+++|+++|+++++..+
T Consensus 645 l~~~~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 645 VFKFFGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHhhc
Confidence 999999999999999999985443
No 13
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=1.6e-90 Score=823.37 Aligned_cols=602 Identities=15% Similarity=0.136 Sum_probs=478.3
Q ss_pred CccccccCCCccccCCCCHHHHH-HHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhcc-cCC-----CCc
Q 004968 78 PTPILDLVENPLRLKSLTIKELK-QLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHHV-FHA-----PVD 143 (721)
Q Consensus 78 ~~~~l~~i~~p~~~~~~~~~~l~-~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~v-f~~-----p~D 143 (721)
.||+|++|+.|++.+.....+|+ ++|++||..++.++++ + +||+++++|++|++.+||++ |+. ++|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 67899999888887777777999 8999999999999986 5 79999999999999999976 675 688
Q ss_pred EEEecCCchH---HHHHHHhCch--hhhHHHHh---hCCCCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH----
Q 004968 144 KILWDVGEQT---YAHKILTGRR--SLIHTLRK---KDGISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI---- 210 (721)
Q Consensus 144 ~iv~d~GH~~---y~h~~ltGr~--~~~~~~r~---~ggl~G~~~~~es~~-d~~~~G~~G~~is~A~G~AlA~~l---- 210 (721)
||||+||++ |+|++|+||. ++|.++|| .+|++|||++.++|+ +.|++||+|+|+++|+|+|+|+++
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999996 88999999 457999999999998 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhh---hhhhhhhhhhchH
Q 004968 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINA---LSSTLSRIQSSKS 283 (721)
Q Consensus 211 ---~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~---l~~~l~~~~~~~~ 283 (721)
++.+++||||+|||++++|++|||||+|+.++ .|||||||||+|+ ++++++. +...|.+
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~s--------i~~~v~~~~~~~~~l~~------ 280 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR--------LDGPVTGNGKIINELEG------ 280 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC--------SSSBSCTTSCHHHHHHH------
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcc--------cCCCccccccccHHHHH------
Confidence 78899999999999999999999999999999 5799999999984 5566664 2222222
Q ss_pred HHHHHHHHhhhhhcc-C------------cchHHHHHHHHH------------HhhcccCCC---cccee---eeeCceE
Q 004968 284 FRQLREVAKGMTKRI-G------------RGMHEWAAKVDE------------YARGMIGPQ---GSTLF---EELGLYY 332 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~-g------------~~~~~~~~~~~~------------~~~~~~~~~---~~~l~---ea~G~~~ 332 (721)
.++..++...+.. | ..+.....++.+ ++|..+-.. ...+. ...|++|
T Consensus 281 --~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~ 358 (886)
T 2qtc_A 281 --IFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWA 358 (886)
T ss_dssp --HHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHT
T ss_pred --HHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhh
Confidence 2233333333321 2 222222222222 232211100 01111 2248899
Q ss_pred EeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC------------------------
Q 004968 333 IGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------------------------ 388 (721)
Q Consensus 333 ~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------------------------ 388 (721)
. ++||||+++|.++++++++. .++|++||++|+||+|++++++ ++.++|++.
T Consensus 359 l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e--~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~ 434 (886)
T 2qtc_A 359 L-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAK--GKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIE 434 (886)
T ss_dssp C-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC---------------CHHHHHHHHHTTCSCCHHHHT
T ss_pred c-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhc--CCccccCCCCCCHHHHHHHHHHcCCCCChhhhc
Confidence 8 99999999999999999985 4689999999999999987765 688999874
Q ss_pred --CC--CC-----------------CC-CC-----------C------------CCcccHHHHHHHHHHHHHHcC---CC
Q 004968 389 --SD--SN-----------------SL-PF-----------G------------NYSRTYDDCFIEALVMEAEKD---KD 420 (721)
Q Consensus 389 --~f--~~-----------------g~-~~-----------~------------~~~~~~~~~~~~~L~~~~~~d---~~ 420 (721)
+| .+ |. +. + ....+++++|+++|.++++++ ++
T Consensus 435 ~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~ 514 (886)
T 2qtc_A 435 KLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDR 514 (886)
T ss_dssp TCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTT
T ss_pred cccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCc
Confidence 55 11 11 00 1 123578999999999999988 99
Q ss_pred eEEEecC---CCCc------cC-----hHHHH-----------HhCCCcEeeccccHHHH-H---HHHHHHHhCC--Cee
Q 004968 421 IVVVHAG---MEMD------LS-----LQLFQ-----------EKFPERYFDVGMAEQHA-V---TFSAGLACGG--LKP 469 (721)
Q Consensus 421 iv~i~ad---~~~~------~~-----l~~f~-----------~~fp~R~~d~GIaE~~~-v---~~AaGlA~~G--~~p 469 (721)
||++++| |.|+ ++ +..|. +.||+||||+||+|++| + ++|+|+|++| ++|
T Consensus 515 iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P 594 (886)
T 2qtc_A 515 LVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIP 594 (886)
T ss_dssp EEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEE
T ss_pred EEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceE
Confidence 9999999 4432 22 24554 67899999999999995 5 6999999999 899
Q ss_pred EEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 004968 470 FCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (721)
Q Consensus 470 ~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~ 547 (721)
|+.+|++| +||++||+++++++++.++++..+..+. +|.||+|||+.+|+++++++||++|++|+|+.|++.+++.|+
T Consensus 595 ~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al 674 (886)
T 2qtc_A 595 FYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGL 674 (886)
T ss_dssp EEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHH
Confidence 99999999 8999999999999999999998765443 689999999999999999999999999999999999999999
Q ss_pred HhCCCC----EEEEecCCC--cccccCCCCCCcceecCceEEEEeC----CcEEEEEechhhHHHHHHHHHHHhC-CCCe
Q 004968 548 SIDDRP----VCFRYPRGA--IVRTDLPGYRGIPIEIGKGKVLVEG----KDVALLGYGAMVQNCLKARALLSKL-GIDV 616 (721)
Q Consensus 548 ~~~~~P----~~ir~~r~~--~~~~~~p~~~~~~~~~gk~~vl~eG----~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v 616 (721)
+..++| +++|++|++ .....+|....+.+ +++++++++| +||+||++|+++++|++|++.|+++ ||++
T Consensus 675 ~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a 753 (886)
T 2qtc_A 675 ERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGS 753 (886)
T ss_dssp HHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEE
T ss_pred HhcCCCCCceEEEEEeCCccccCCCCCCcchhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCce
Confidence 866789 999999975 21112332111234 7899999997 7999999999999999999999998 9999
Q ss_pred EEeecCccccccHHH-------------------HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe
Q 004968 617 TVADARFCKPLDIKL-------------------VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV 677 (721)
Q Consensus 617 ~VId~~~l~PlD~e~-------------------i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g 677 (721)
+|||++|++|||+++ +.+++.. ..+|++|++.. |+++.+..++. ..+++.+|
T Consensus 754 ~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~-------~~~~~~lG 824 (886)
T 2qtc_A 754 DVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVP-------ADDYRVLG 824 (886)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCC-------SSCEEEEC
T ss_pred EEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcC-------CCCeEEEE
Confidence 999999999999986 4455555 67888998876 56665544332 14678899
Q ss_pred cCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 678 LPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 678 ~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+ |.|+.+|+++++++++|||+++|++++++++.
T Consensus 825 ~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~ 857 (886)
T 2qtc_A 825 T-DGFGRSDSRENLRHHFEVDASYVVVAALGELA 857 (886)
T ss_dssp C-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred e-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999884
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=7.6e-91 Score=813.24 Aligned_cols=535 Identities=19% Similarity=0.201 Sum_probs=464.5
Q ss_pred HHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc---ccC------CCCcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~---vf~------~p~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
+|+++|++||..+++++.+ ++||+|+++|+++++.+||+ .|| .++|+||+|+||++ |++++++|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 4778999999999999986 89999999999999999996 455 23799999999999 999999999
Q ss_pred -hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~ 230 (721)
.+++.++||+++ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 588999999997 56999988899999999999999999999999999775 689999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||||++|+++++ |+|+|+|||+++ ++.++... .
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~--------i~~~~~~~--------------------------~----------- 199 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYIS--------IDGSTSLS--------------------------F----------- 199 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBC--------SSSBGGGT--------------------------C-----------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCc--------cccchhhc--------------------------c-----------
Confidence 9999999999996 599999999983 23232210 0
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
..+...+|+++||++++.+|| ||+++|.++++++++. .++|++|+++|.||+|++ .| +..+||+.+
T Consensus 200 --------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (673)
T 1r9j_A 200 --------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ---GTEKVHGAP 266 (673)
T ss_dssp --------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT---TSGGGTSSC
T ss_pred --------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC---CCcccccCC
Confidence 111245789999999888999 9999999999999863 478999999999999998 55 478899963
Q ss_pred -------------------CCCC--------------CC------------------------------CCC--------
Q 004968 389 -------------------SDSN--------------SL------------------------------PFG-------- 397 (721)
Q Consensus 389 -------------------~f~~--------------g~------------------------------~~~-------- 397 (721)
+|.. |+ ..+
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p 346 (673)
T 1r9j_A 267 LGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLP 346 (673)
T ss_dssp CCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSC
T ss_pred CCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhcc
Confidence 2300 00 000
Q ss_pred --CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChH--H-----HHH-hCCCcEeeccccHHHHHHHHHHHHhC-C
Q 004968 398 --NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ--L-----FQE-KFPERYFDVGMAEQHAVTFSAGLACG-G 466 (721)
Q Consensus 398 --~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~--~-----f~~-~fp~R~~d~GIaE~~~v~~AaGlA~~-G 466 (721)
....+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+|++|+++|+|+|+. |
T Consensus 347 ~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG 426 (673)
T 1r9j_A 347 TNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDG 426 (673)
T ss_dssp CCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSS
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCC
Confidence 02356889999999999999999999999998766552 3 887 99999999999999999999999999 5
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||+++|++|++++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~~~~~F~~~~~~~i-r~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~ 505 (673)
T 1r9j_A 427 IIPFGGTFLNFIGYALGAV-RLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAV 505 (673)
T ss_dssp CEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHH
T ss_pred CEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHH
Confidence 9999999999999999997 5589999999999988777 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCCc-ceecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~~-~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
|++..++|++||++|++.+. ++.. .+ .+++| ++++++| +|++||++|+++++|++|++.|+++ |+++|||++
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~ 580 (673)
T 1r9j_A 506 ALSSIHTPTVLCLSRQNTEP--QSGS-SIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMP 580 (673)
T ss_dssp HHHCTTCCEEEECCSSEECC--CTTC-CHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECS
T ss_pred HHHhCCCeEEEEEcCCCCCC--CCCc-ccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 99855899999999987543 2322 23 46678 6899998 8999999999999999999999999 999999999
Q ss_pred ccccccHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 623 FCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 623 ~l~PlD~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
|++|||++. +.++++++.++|+||++..+||+++| +++ +|+ |.|+++|+.+++++++|+|+
T Consensus 581 sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~~ 644 (673)
T 1r9j_A 581 CQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGITV 644 (673)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCSH
T ss_pred CCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcCH
Confidence 999999985 88888888889999999888887543 133 898 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004968 700 HHIAATALSLLGR 712 (721)
Q Consensus 700 ~~I~~~i~~~l~~ 712 (721)
++|+++|++++++
T Consensus 645 ~~I~~~i~~~l~~ 657 (673)
T 1r9j_A 645 EEVVRTGRELAKR 657 (673)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999843
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3.8e-64 Score=586.53 Aligned_cols=527 Identities=12% Similarity=0.089 Sum_probs=415.3
Q ss_pred CCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchH---HHHHHHhCch-----------hhhHH-HHhhC---CCC
Q 004968 117 TEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTGRR-----------SLIHT-LRKKD---GIS 176 (721)
Q Consensus 117 ~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~---y~h~~ltGr~-----------~~~~~-~r~~g---gl~ 176 (721)
.+||+|+++|++++.+.+.++.. ..+|+ ||+++||.+ |+...|.|.. +.+.. +|||. |+.
T Consensus 81 ~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~p 160 (845)
T 3ahc_A 81 LVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIP 160 (845)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCC
Confidence 57999999999998433322211 35899 799999999 9998999983 44655 57764 488
Q ss_pred CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHHhhhcC-CCEEEEEECC
Q 004968 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDS 252 (721)
Q Consensus 177 G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~A~~~~-~plivIv~dN 252 (721)
|||.+ +.|+....+|++|+|++.|+|||+ .+++.+|+|++|||+..+|. .||+.++|..++ .||++|+++|
T Consensus 161 gHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N 235 (845)
T 3ahc_A 161 SHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLN 235 (845)
T ss_dssp SSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEEC
T ss_pred CCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECC
Confidence 88865 677878899999999999999995 46789999999999999999 999999999998 8999999999
Q ss_pred CCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE
Q 004968 253 RHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (721)
Q Consensus 253 ~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~ 332 (721)
+++ ++.+.- + .+. +.+++ ..+|++|||++
T Consensus 236 ~~~--------i~g~t~-l----~~~----------------------~~e~l----------------~~rf~a~Gw~v 264 (845)
T 3ahc_A 236 GYK--------IANPTI-L----ARI----------------------SDEEL----------------HDFFRGMGYHP 264 (845)
T ss_dssp SBS--------SSSBCH-H----HHS----------------------CHHHH----------------HHHHHHTTEEE
T ss_pred CCc--------CCCCcc-c----ccc----------------------CcHHH----------------HHHHHHCCCEE
Confidence 984 222221 0 000 00111 34689999999
Q ss_pred EeccCC-C--CHHHHHHHHHH---------------HHhcCCCCC--EEEEEEEeccC-------CCccccccccccccc
Q 004968 333 IGPVDG-H--NIEDLISVLQE---------------VASLGSMGP--VLVHVVTEENR-------RAEDTQKSEAIEKQQ 385 (721)
Q Consensus 333 ~g~vdG-h--d~~~l~~al~~---------------a~~~~~~~P--~lI~v~T~kg~-------G~~~ae~~~~~~~~H 385 (721)
+..||| | |++++.+++.+ ++....++| ++|.++|.||+ |. +.| +..+||
T Consensus 265 ~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~-~~e---g~~~~H 340 (845)
T 3ahc_A 265 YEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGK-KTE---GSWRAH 340 (845)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTE-ECT---TSGGGS
T ss_pred eEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCc-ccC---CCcccc
Confidence 767899 9 99988877542 222113689 99999999999 98 466 477899
Q ss_pred ccCC-------------------------C--------------CCCCC-------------CC----C-----------
Q 004968 386 EGAS-------------------------D--------------SNSLP-------------FG----N----------- 398 (721)
Q Consensus 386 g~~~-------------------------f--------------~~g~~-------------~~----~----------- 398 (721)
+++. | ..|.. .+ +
T Consensus 341 ~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~ 420 (845)
T 3ahc_A 341 QVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVK 420 (845)
T ss_dssp SCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHH
T ss_pred CCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccc
Confidence 8741 2 00000 00 0
Q ss_pred ----C--cccHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHHh---------C--C--------CcEeeccccH
Q 004968 399 ----Y--SRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQEK---------F--P--------ERYFDVGMAE 452 (721)
Q Consensus 399 ----~--~~~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~~---------f--p--------~R~~d~GIaE 452 (721)
. ...-+.+++++|.++++.+|+ +++++||+.+|+.+..|.+. + | +|||+ ||+|
T Consensus 421 ~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~E 499 (845)
T 3ahc_A 421 EYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSE 499 (845)
T ss_dssp HHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCH
T ss_pred cccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecH
Confidence 0 113478889999999999999 99999999999999888777 7 7 89999 9999
Q ss_pred HHHHHHHHHHHhCCCeeEEEecHhhH---HHHHHH----HHHHhhcC----Cc-ceEEEEcCCCC-cCCCCCCcCc--HH
Q 004968 453 QHAVTFSAGLACGGLKPFCIIPSAFL---QRAYDQ----VVNDVDQQ----RL-PVRFVITSAGL-VGSDGPTQCG--AF 517 (721)
Q Consensus 453 ~~~v~~AaGlA~~G~~p~~~tys~Fl---~ra~dq----i~~~~a~~----~l-pVv~v~~~~G~-~G~dG~TH~~--~~ 517 (721)
|+|+++++|+|+.|..||+.+|++|+ .|+++| |++.++++ .+ +|+++.++.|+ +|+||+|||+ .+
T Consensus 500 h~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~ 579 (845)
T 3ahc_A 500 HQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVT 579 (845)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHH
T ss_pred HHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHH
Confidence 99999999999999999999998887 799999 87663443 45 69999999999 8999999999 56
Q ss_pred HHHHHc---cCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCc---ceecCceEEE---Ee--
Q 004968 518 DITFMS---CLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI---PIEIGKGKVL---VE-- 586 (721)
Q Consensus 518 dia~~~---~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~---~~~~gk~~vl---~e-- 586 (721)
|+..++ .+||+.|+.|+|++|+..+++.|++..+.|.+++++|++.+.. ... .+ .+..|++.+. ++
T Consensus 580 d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~--~~~-~~a~~~~~~G~~v~~~as~d~~ 656 (845)
T 3ahc_A 580 SLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTW--VTL-DEARAELEAGAAEWKWASNAEN 656 (845)
T ss_dssp HHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEEC--SCH-HHHHHHHHHSEEECTTTCCCSS
T ss_pred HHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--CCc-hhhhhhhcCCeEEEEeeccccc
Confidence 666665 7899999999999999999999998555555555699986542 111 12 3456666555 35
Q ss_pred C--CcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecCcc---ccccHHHHHHHhccCCeEEEEcCCC---CCChHHHH
Q 004968 587 G--KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFC---KPLDIKLVRELCQNHTFLITVEEGS---IGGFGSHV 657 (721)
Q Consensus 587 G--~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~~l---~PlD~e~i~~l~~~~~~vvvvEe~~---~gG~gs~v 657 (721)
| .||+||++|+++ .+|++|++.|+++||+++|||+.++ +|.|++.+....+..+.|+|+|++. .||+++.|
T Consensus 657 g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV 736 (845)
T 3ahc_A 657 NDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDV 736 (845)
T ss_dssp TTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHH
T ss_pred CCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHH
Confidence 5 799999999775 5599999999999999999999999 5655443322333456778888886 39999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
++.+.++. .+.++.++|++| |+.+|++.++++++|||.++|++++++++.
T Consensus 737 ~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 737 RGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp HHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 99988762 146899999998 999999999999999999999999999886
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=6.3e-61 Score=571.51 Aligned_cols=550 Identities=14% Similarity=0.101 Sum_probs=392.5
Q ss_pred CCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC-----CCCcEEEecCCchHHHHHHH--h
Q 004968 92 KSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (721)
Q Consensus 92 ~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~l--t 160 (721)
.+++.+++..+.+.+ |.+=-....+ .+|-.-+..|+-.+..++.+.++ .++|+++. ..||.+.|.+. .
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g-~~hRg~~~~Lan~~ 271 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLG-MAHRGRLNVLVNVL 271 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEE-CCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEec-CCCcCHHHHHHHHh
Confidence 457878777665544 3322222222 22221224555223333222221 35777763 37999999888 6
Q ss_pred CchhhhHHHHhh-CCCCCCCCCCC-CCC-----------------CCcCcCCCcchHHHHHHHHHHHHHcC-----CCCe
Q 004968 161 GRRSLIHTLRKK-DGISGYTSRSE-SEY-----------------DPFNAGHGCNSVSAGLGMAVARDIKG-----KREC 216 (721)
Q Consensus 161 Gr~~~~~~~r~~-ggl~G~~~~~e-s~~-----------------d~~~~G~~G~~is~A~G~AlA~~l~g-----~~~~ 216 (721)
|.... ..+.++ |...|.....+ +.| ..+..||+|+++|+|+|+|+|+++++ .++.
T Consensus 272 G~~~~-~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~ 350 (933)
T 2jgd_A 272 GKKPQ-DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVL 350 (933)
T ss_dssp CCCHH-HHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEE
T ss_pred CCCHH-HHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeE
Confidence 75221 223343 32233221111 111 13667999999999999999999884 6789
Q ss_pred EEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCc-chhhhhhhhhhhhhchHHHHHHHHH
Q 004968 217 IVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKT-SINALSSTLSRIQSSKSFRQLREVA 291 (721)
Q Consensus 217 VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~-~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (721)
+||++|||++ ++|++||+||+|+.+++| +|+||+||++. +++ +++.. .
T Consensus 351 vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~--------ist~~~~~~-------~------------ 403 (933)
T 2jgd_A 351 PITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVG--------FTTSNPLDA-------R------------ 403 (933)
T ss_dssp EEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------------------------
T ss_pred EEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCcc--------ccCCCHHhc-------c------------
Confidence 9999999998 899999999999999999 99999999983 222 22200 0
Q ss_pred hhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecc
Q 004968 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEEN 369 (721)
Q Consensus 292 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg 369 (721)
.++....+++++||.++ .|||+|++++.++++++++. ..++|++|++.|.++
T Consensus 404 -------------------------~~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 404 -------------------------STPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ----------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred -------------------------cchhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 00112456788999988 78999999999998887631 147899999999999
Q ss_pred CCCccccc-----------c--------------------------------------------c------ccccccccC
Q 004968 370 RRAEDTQK-----------S--------------------------------------------E------AIEKQQEGA 388 (721)
Q Consensus 370 ~G~~~ae~-----------~--------------------------------------------~------~~~~~Hg~~ 388 (721)
+|+...+. + . ....||++.
T Consensus 458 ~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~ 537 (933)
T 2jgd_A 458 HGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYL 537 (933)
T ss_dssp C-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGS
T ss_pred cCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccccc
Confidence 88643210 0 0 012456654
Q ss_pred CC------CCCCCCC-----------------------------------CCcccHHHHHHHHHHHHHHcCCCeEEEecC
Q 004968 389 SD------SNSLPFG-----------------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHAG 427 (721)
Q Consensus 389 ~f------~~g~~~~-----------------------------------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad 427 (721)
+| .||.+.+ ....+|..+++.+|.+++++|++|+++++|
T Consensus 538 ~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~D 617 (933)
T 2jgd_A 538 NHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGED 617 (933)
T ss_dssp SCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETT
T ss_pred ccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 43 2332200 013578899999999999999999999999
Q ss_pred CCCc------------------cChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCe--eEEE-ecHhhHH---HHH
Q 004968 428 MEMD------------------LSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-IPSAFLQ---RAY 482 (721)
Q Consensus 428 ~~~~------------------~~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~--p~~~-tys~Fl~---ra~ 482 (721)
++.| ++++.|.++| |+||||+||+|++++|+|+|+|++|.+ |+++ +|++|++ |++
T Consensus 618 v~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~ 697 (933)
T 2jgd_A 618 SGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVI 697 (933)
T ss_dssp TTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHH
T ss_pred cCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHH
Confidence 9876 4578899999 999999999999999999999999998 9886 6999996 999
Q ss_pred HHHHHHh-h--cCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC-CCCEEE
Q 004968 483 DQVVNDV-D--QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCF 556 (721)
Q Consensus 483 dqi~~~~-a--~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~-~~P~~i 556 (721)
||+++++ + .+++||++++++ |..| .|++||+ .+++..++++|||+|++|+|+.|++.|+++++... ++|++|
T Consensus 698 DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii 775 (933)
T 2jgd_A 698 DQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVV 775 (933)
T ss_dssp HHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998 6 479999999998 5556 4999999 55544445679999999999999999999985443 799999
Q ss_pred EecCCCccc-ccCCC-----CCCcceecCceEEEEeCCcE--EEEEechhhHHHHHHHHHHHhCCCCeEEeecCcccccc
Q 004968 557 RYPRGAIVR-TDLPG-----YRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLD 628 (721)
Q Consensus 557 r~~r~~~~~-~~~p~-----~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD 628 (721)
|+||..+.. ..++. ...+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++|+|||
T Consensus 776 ~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld 852 (933)
T 2jgd_A 776 MSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFP 852 (933)
T ss_dssp EECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCC
T ss_pred EecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCC
Confidence 999986431 11110 123456789988777 8899 6777777777777777888765 89999999999999
Q ss_pred HHHHHHHhccCC---eEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHHHHH
Q 004968 629 IKLVRELCQNHT---FLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 629 ~e~i~~l~~~~~---~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~-~g~~~~l~~~~gl~~~~I~ 703 (721)
+++|.+++++++ .||++||+. .||++++|++.+.+.++. ..+++++|.||.|.+ .|..... -...+.|+
T Consensus 853 ~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~~~~h----~~~~~~i~ 926 (933)
T 2jgd_A 853 HKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGHMSVH----QKQQQDLV 926 (933)
T ss_dssp HHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSCHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCCHHHH----HHHHHHHH
Confidence 999999998887 899999987 799999999999887642 357999999999998 4543322 23456676
Q ss_pred HHHH
Q 004968 704 ATAL 707 (721)
Q Consensus 704 ~~i~ 707 (721)
+.+.
T Consensus 927 ~~a~ 930 (933)
T 2jgd_A 927 NDAL 930 (933)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=3.1e-62 Score=533.93 Aligned_cols=335 Identities=22% Similarity=0.307 Sum_probs=244.8
Q ss_pred EEeccCCCcc-cccccccccccccCCC-CCCCCCC--C---CcccHHHHHHHHHHHHHHcCCCeEEEecCCCCc----cC
Q 004968 365 VTEENRRAED-TQKSEAIEKQQEGASD-SNSLPFG--N---YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD----LS 433 (721)
Q Consensus 365 ~T~kg~G~~~-ae~~~~~~~~Hg~~~f-~~g~~~~--~---~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~----~~ 433 (721)
.|.|||||.| ||+ +.++||+..|| +||++.+ . ...+|+++|+++|.+++++|++|+++++|++.+ ..
T Consensus 10 ~t~kg~g~~~~a~~--~~~~~h~~~pf~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~ 87 (369)
T 1ik6_A 10 LVPRGSGMKETAAA--KFERNHMDSPDLGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLV 87 (369)
T ss_dssp ------------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CT
T ss_pred CCCCCCCCCcchhh--chhhhcccCCcCCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchh
Confidence 6999999999 988 78999999999 7787433 1 456899999999999999999999999999722 23
Q ss_pred hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ecHhhHHHHHHHHHHHhhcC--------CcceEEEEcCC
Q 004968 434 LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSA 503 (721)
Q Consensus 434 l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-tys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~ 503 (721)
++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|++|++|++|||++++|++ ++||+++++++
T Consensus 88 ~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~g 167 (369)
T 1ik6_A 88 TEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVG 167 (369)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 68899999 9999999999999999999999999999998 69999999999999999977 99999999999
Q ss_pred CCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCce
Q 004968 504 GLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKG 581 (721)
Q Consensus 504 G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~ 581 (721)
|.+| +|+|||+.++ ++|+++|||+|++|+|++|++.++++|++ .++|++||+|+..... .+++. +.+.+++||+
T Consensus 168 g~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~-~~~~~~~G~~ 243 (369)
T 1ik6_A 168 SGTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE-GDYVVEIGKA 243 (369)
T ss_dssp C------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC-SSCCCCTTCC
T ss_pred CCCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC-CcccccCCce
Confidence 8777 8999999875 99999999999999999999999999987 7899999999875422 12332 2345789999
Q ss_pred EEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHH
Q 004968 582 KVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHF 660 (721)
Q Consensus 582 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~ 660 (721)
+++++|+|++||++|+++..|++|++.|+ | +++|||++|++|||++.+++++++++.+|++||+. .||||++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999997 8 99999999999999999999988888899999997 79999999999
Q ss_pred HHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 661 l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+.++++.....++.++|++|.|+++|+ +++++|||+++|+++|+++++
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 998875322467899999999999987 999999999999999998874
No 18
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=6.3e-57 Score=487.66 Aligned_cols=307 Identities=21% Similarity=0.287 Sum_probs=276.2
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCC--c-c-ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM--D-L-SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI- 472 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~-~-~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~- 472 (721)
...+|+++|+++|.+++++|++|+++++|++. + + .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999999999999982 3 2 368899999 9999999999999999999999999999998
Q ss_pred ecHhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 473 IPSAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
+|++|++|++|||++++| ++++||++++++ |.+|.+|+||++..| ++++++|||+|++|+|++|++++++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 699999999999999998 399999999997 778899999987778 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcc-cccC----CCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEe
Q 004968 545 TVASIDDRPVCFRYPRGAIV-RTDL----PGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~----p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 619 (721)
+|++ .++|++||+||+.+. ..++ ++ +.+.+++||++++++|+|++||+||+++..|++|++.|+++|++++||
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9987 589999999986421 1112 22 345678999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHh-cCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 620 DARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIAL-DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 620 d~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~-~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
|+++++|||++.+++++++++.+|+|||+. .||||++|++++.+ +++...+.+++++|+||.|+++|+ ++++++|+
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~ 326 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIP 326 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSC
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCc
Confidence 999999999999999998888899999998 69999999999998 775223468899999999999986 68899999
Q ss_pred CHHHHHHHHHHHhh
Q 004968 698 TGHHIAATALSLLG 711 (721)
Q Consensus 698 ~~~~I~~~i~~~l~ 711 (721)
|+++|+++|+++++
T Consensus 327 ~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 327 QVKDIIFAIKKTLN 340 (341)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998874
No 19
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=4.9e-57 Score=535.43 Aligned_cols=542 Identities=14% Similarity=0.086 Sum_probs=376.2
Q ss_pred cCCCccccCCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccH----HHHHHHHhcc-cCCCCcEEEecCCchHH
Q 004968 84 LVENPLRLKSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAA----VELTVALHHV-FHAPVDKILWDVGEQTY 154 (721)
Q Consensus 84 ~i~~p~~~~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~----vel~~aL~~v-f~~p~D~iv~d~GH~~y 154 (721)
.+..+. .+++.+++..+.+.+ |.+=.....+ .+|-..+..|+ +.+..+|... -..++|.++. ..|+..
T Consensus 107 ~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~g-m~hRg~ 183 (868)
T 2yic_A 107 RVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIA-MPHRGR 183 (868)
T ss_dssp HHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEE-CCSTTH
T ss_pred HhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEe-ccccch
Confidence 444433 578888877765544 3322222221 12222233554 3333333211 1136776653 469998
Q ss_pred HHHHH--hCchhhhHHHHhhCCC-CCC-CCC-CC-CCC-------------------CCcCcCCCcchHHHHHHHHHHHH
Q 004968 155 AHKIL--TGRRSLIHTLRKKDGI-SGY-TSR-SE-SEY-------------------DPFNAGHGCNSVSAGLGMAVARD 209 (721)
Q Consensus 155 ~h~~l--tGr~~~~~~~r~~ggl-~G~-~~~-~e-s~~-------------------d~~~~G~~G~~is~A~G~AlA~~ 209 (721)
.|.+. .|.... ..+.++.|. .|. .+. ++ +.| ....+||+|+++|+|+|+|+|.+
T Consensus 184 ~~~Lan~~G~~~~-~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k 262 (868)
T 2yic_A 184 LNVLANIVGKPYS-QIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQ 262 (868)
T ss_dssp HHHHHHTTCCCHH-HHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHH-HHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHH
Confidence 88888 664221 223444332 222 011 11 111 01235789999999999999998
Q ss_pred HcC----------CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhh
Q 004968 210 IKG----------KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTL 275 (721)
Q Consensus 210 l~g----------~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l 275 (721)
+++ .+..+||++|||++ ++|.+||+||+|+.+++| +|+||+||++. +.| +..
T Consensus 263 ~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st-------~~~------ 328 (868)
T 2yic_A 263 DLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT------ 328 (868)
T ss_dssp HHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH------
T ss_pred hhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-ccc-------Ccc------
Confidence 764 66899999999996 899999999999999987 99999999872 211 100
Q ss_pred hhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-
Q 004968 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL- 354 (721)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~- 354 (721)
.. +. .++...+++++||.++ .|||||++++.+++++|.+.
T Consensus 329 -~~-----------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~a 369 (868)
T 2yic_A 329 -DS-----------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFR 369 (868)
T ss_dssp -HH-----------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHH
T ss_pred -cc-----------------------------------cc--ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHH
Confidence 00 00 0112457889999998 78999999999999887631
Q ss_pred -CCCCCEEEEEEEeccCCCccccccc-----ccccccccC-C--------------------------------------
Q 004968 355 -GSMGPVLVHVVTEENRRAEDTQKSE-----AIEKQQEGA-S-------------------------------------- 389 (721)
Q Consensus 355 -~~~~P~lI~v~T~kg~G~~~ae~~~-----~~~~~Hg~~-~-------------------------------------- 389 (721)
..++|++|+++|.+++|+...+... ....|+... |
T Consensus 370 r~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~ 449 (868)
T 2yic_A 370 QAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVR 449 (868)
T ss_dssp HHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1478999999999999987654200 001122110 0
Q ss_pred ----------------------CCCCCC-------------CC---CCcccH------HH----------HHHHHH--HH
Q 004968 390 ----------------------DSNSLP-------------FG---NYSRTY------DD----------CFIEAL--VM 413 (721)
Q Consensus 390 ----------------------f~~g~~-------------~~---~~~~~~------~~----------~~~~~L--~~ 413 (721)
..|+-. .+ ...... +. +++++| ..
T Consensus 450 ~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~ 529 (868)
T 2yic_A 450 ELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGS 529 (868)
T ss_dssp HHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred hcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 001000 00 000010 11 233332 24
Q ss_pred HHHcCCCeEEEecCCCCcc------------------ChHHH------HH-hCCCcEeeccccHHHHHHHHHHHHhCCCe
Q 004968 414 EAEKDKDIVVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK 468 (721)
Q Consensus 414 ~~~~d~~iv~i~ad~~~~~------------------~l~~f------~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G~~ 468 (721)
++++|++|+++++|++.+| .++.| ++ .+|+||||+||||++++|+|+|+|+.|.+
T Consensus 530 l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~ 609 (868)
T 2yic_A 530 LIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPD 609 (868)
T ss_dssp HHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCC
Confidence 5899999999999998752 25778 55 78999999999999999999999999954
Q ss_pred --eEEE-ecHhhHHHH---HHHHHHHh---hcCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHH
Q 004968 469 --PFCI-IPSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 469 --p~~~-tys~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~ 537 (721)
|+++ +|++|+++| +||+++++ ..+++||+++++++| .| +||+|++ .+++..|+++|||+|++|+|+.
T Consensus 610 ~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~ 687 (868)
T 2yic_A 610 AMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPA 687 (868)
T ss_dssp SEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHH
T ss_pred CceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHH
Confidence 5444 599999887 99999886 357999999999877 67 9999998 7777777999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCEEEEecCCCcccc-cCCCC-----CCcceecCceEE---EEeCCcE--EEEEechhhHHHHHH
Q 004968 538 ELVDMVATVASID-DRPVCFRYPRGAIVRT-DLPGY-----RGIPIEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKA 605 (721)
Q Consensus 538 E~~~~l~~a~~~~-~~P~~ir~~r~~~~~~-~~p~~-----~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~A 605 (721)
|++.++++++..+ ++|++|++||..+... .++.. ..+..++|++.+ +++|+|| +|||+|.+ ..+++|
T Consensus 688 ~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~a 766 (868)
T 2yic_A 688 NYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAA 766 (868)
T ss_dssp HHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHH
Confidence 9999999987642 4999999999854221 11110 112237898887 7899999 99999998 677766
Q ss_pred HHHHHhCC-CCeEEeecCccccccHHHHHHHhccCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCC
Q 004968 606 RALLSKLG-IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPD 680 (721)
Q Consensus 606 a~~L~~~G-i~v~VId~~~l~PlD~e~i~~l~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d 680 (721)
++ +++| ++++|||+++|+|||.++|.+++++++. ||++||+. .||++++|++.+.+. +...+.+++++|.||
T Consensus 767 a~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d 843 (868)
T 2yic_A 767 RK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRA 843 (868)
T ss_dssp HH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECC
T ss_pred HH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCC
Confidence 66 5679 9999999999999999999999988876 88888876 799999999999873 211124789999999
Q ss_pred ccccC-CCH
Q 004968 681 NYIEH-ASP 688 (721)
Q Consensus 681 ~f~~~-g~~ 688 (721)
.|.+. |..
T Consensus 844 ~~~p~~g~~ 852 (868)
T 2yic_A 844 MSAPSSGSS 852 (868)
T ss_dssp CSSSSCSCH
T ss_pred cCCCCCCCH
Confidence 99984 544
No 20
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=9.7e-57 Score=483.87 Aligned_cols=304 Identities=23% Similarity=0.311 Sum_probs=273.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCC--cc--ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEM--DL--SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~~--~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-ty 474 (721)
.+|+++|+++|.+++++||+|+++++|++. ++ .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 589999999999999999999999999975 32 357899999 9999999999999999999999999999998 69
Q ss_pred HhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
++|++|++|||++++|+ +++||+++.++ |..|.+|+||++ +|.++++++|||+|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 666788889888 666999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 547 ASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
++ .++|++||+|+..... .++|. +.+.+++||++++++|+|++||+||++++.|++|++.|+++||+++|||++++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 238 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE-GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC-ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 87 7899999999876422 23332 24567899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~ 703 (721)
+|||++.+++++++++.+|++||+. .||||++|++++.++++.....+++++|+||.|+++|+ +++++|+|+++|+
T Consensus 239 ~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I~ 315 (324)
T 1w85_B 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDVI 315 (324)
T ss_dssp ESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHHH
T ss_pred cCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHHH
Confidence 9999999999998888999999997 79999999999998865323467899999999999987 9999999999999
Q ss_pred HHHHHHhh
Q 004968 704 ATALSLLG 711 (721)
Q Consensus 704 ~~i~~~l~ 711 (721)
++|+++++
T Consensus 316 ~~i~~~l~ 323 (324)
T 1w85_B 316 ETAKKVMN 323 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998864
No 21
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=4.7e-56 Score=478.64 Aligned_cols=304 Identities=24% Similarity=0.259 Sum_probs=272.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc----ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-e
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-t 473 (721)
..+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 368999999999999999999999999997522 357899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|++|||++++|+ +++|++++.++ |..|.+|+|||+ +|+++++++||++|++|+|++|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999985 666778888888 67799999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
|++ .++|++||+|+..... .++|. +.+.+++||++++++|+|++||+||++++.|++|++.|+++||+++|||+++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE-EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC-CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 986 7899999998865422 23332 2355789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
++|||++.+++++++++.+|++||+. .||||++|++++.++++...+.++.++|+||.|+++| +++++|+|+++|
T Consensus 239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~I 314 (324)
T 1umd_B 239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTRI 314 (324)
T ss_dssp EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHHH
Confidence 99999999999988888999999997 7999999999998876522246789999999999998 899999999999
Q ss_pred HHHHHHHhh
Q 004968 703 AATALSLLG 711 (721)
Q Consensus 703 ~~~i~~~l~ 711 (721)
+++++++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1umd_B 315 LNAAKRALD 323 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998864
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.8e-56 Score=542.49 Aligned_cols=536 Identities=13% Similarity=0.076 Sum_probs=373.1
Q ss_pred CCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccH----HHHHHHHhcc-cCCCCcEEEecCCchHHHHHHH--h
Q 004968 92 KSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAA----VELTVALHHV-FHAPVDKILWDVGEQTYAHKIL--T 160 (721)
Q Consensus 92 ~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~----vel~~aL~~v-f~~p~D~iv~d~GH~~y~h~~l--t 160 (721)
.+++.+++..+.+.+ |.+=.....+ .+|-..+..|+ +.+..+|... -..++|.++. ..||...|.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~g-m~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIA-MPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEE-CCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEe-ccccchHHHHHHHh
Confidence 568888877765544 3322222221 12222223554 3333333211 1146676653 46999988888 6
Q ss_pred CchhhhHHHHhhCCC-CCC-CCC-CC-CCC-------------------CCcCcCCCcchHHHHHHHHHHHHHcC-----
Q 004968 161 GRRSLIHTLRKKDGI-SGY-TSR-SE-SEY-------------------DPFNAGHGCNSVSAGLGMAVARDIKG----- 212 (721)
Q Consensus 161 Gr~~~~~~~r~~ggl-~G~-~~~-~e-s~~-------------------d~~~~G~~G~~is~A~G~AlA~~l~g----- 212 (721)
|.... ..+.++.|. .|. .+. ++ +.| ....+||+|+++|.|+|+|+|.++++
T Consensus 437 G~~~~-~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~ 515 (1113)
T 2xt6_A 437 GKPYS-QIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 515 (1113)
T ss_dssp CCCHH-HHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTT
T ss_pred CCCHH-HHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCc
Confidence 64221 223343332 222 011 11 111 01235899999999999999999876
Q ss_pred -----CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 213 -----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 213 -----~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
.+..+||++|||++ ++|.+||+||+|+.+++| +|+||+||++. +.| +.. ..
T Consensus 516 ~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g-ist-------~~~-------~~----- 575 (1113)
T 2xt6_A 516 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT-------DS----- 575 (1113)
T ss_dssp SSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH-------HH-----
T ss_pred cccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc-ccc-------Ccc-------cc-----
Confidence 57899999999996 899999999999999987 99999999873 211 110 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
+. .+....+++++||.++ .|||||++++.+++++|.+. ..++|++
T Consensus 576 ------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pvl 622 (1113)
T 2xt6_A 576 ------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 622 (1113)
T ss_dssp ------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ------------------------------cc--ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 00 0112357889999998 78999999999998877541 1478999
Q ss_pred EEEEEeccCCCccccccc-----cccccccc-CC----------------------------------------------
Q 004968 362 VHVVTEENRRAEDTQKSE-----AIEKQQEG-AS---------------------------------------------- 389 (721)
Q Consensus 362 I~v~T~kg~G~~~ae~~~-----~~~~~Hg~-~~---------------------------------------------- 389 (721)
|+++|.+++|+...+... .-.+|+.. .|
T Consensus 623 Ie~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~ 702 (1113)
T 2xt6_A 623 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 702 (1113)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999987654200 00011100 00
Q ss_pred --------------CCCCCC-------------CC---CCcccH------HH------HHHHHHHH------HHHcCCCe
Q 004968 390 --------------DSNSLP-------------FG---NYSRTY------DD------CFIEALVM------EAEKDKDI 421 (721)
Q Consensus 390 --------------f~~g~~-------------~~---~~~~~~------~~------~~~~~L~~------~~~~d~~i 421 (721)
..|+-. .+ ...+.. +. ++..++.+ ++++|++|
T Consensus 703 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V 782 (1113)
T 2xt6_A 703 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 782 (1113)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 001100 00 000010 10 11122333 48999999
Q ss_pred EEEecCCCCcc------------------ChHHH------HH-hCCCcEeeccccHHHHHHHHHHHHhCCCe--eEEE-e
Q 004968 422 VVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-I 473 (721)
Q Consensus 422 v~i~ad~~~~~------------------~l~~f------~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G~~--p~~~-t 473 (721)
+++++|++.|| .++.| .+ .+|+||||+||||++++|+|+|+|++|.+ |+++ +
T Consensus 783 ~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaq 862 (1113)
T 2xt6_A 783 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 862 (1113)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 99999998764 36788 65 78999999999999999999999999954 5555 5
Q ss_pred cHhhHHHH---HHHHHHHh---hcCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|+++| +||+++++ .++++||+++++++| .| +||+||+ .+++..++++|||+|++|+|+.|++.+|++
T Consensus 863 f~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~ 940 (1113)
T 2xt6_A 863 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 940 (1113)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHH
T ss_pred EHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHH
Confidence 99999877 99999987 467999999999877 67 8999999 555555599999999999999999999999
Q ss_pred HHHhC-CCCEEEEecCCCcccc-cCCCC-----CCcceecCceEE---EEeCCcE--EEEEechhhHHHHHHHHHHHhCC
Q 004968 546 VASID-DRPVCFRYPRGAIVRT-DLPGY-----RGIPIEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKARALLSKLG 613 (721)
Q Consensus 546 a~~~~-~~P~~ir~~r~~~~~~-~~p~~-----~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~G 613 (721)
++..+ ++|++|++||..+... .++.. ..+..++|++.+ +++|+|| +|||||.+ ..+++|++ +++|
T Consensus 941 a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~g 1017 (1113)
T 2xt6_A 941 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKEN 1017 (1113)
T ss_dssp HHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHHT
T ss_pred HHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhCC
Confidence 88643 4899999999854221 11110 123337899887 7899999 99999998 77777776 5679
Q ss_pred -CCeEEeecCccccccHHHHHHHhccCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccC-CC
Q 004968 614 -IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH-AS 687 (721)
Q Consensus 614 -i~v~VId~~~l~PlD~e~i~~l~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~-g~ 687 (721)
++++|||+++|+|||+++|.++++++++ ||++||+. .||++++|++.+.+. +...+.+++++|.||.|.+. |.
T Consensus 1018 ~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~~g~ 1096 (1113)
T 2xt6_A 1018 REDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSGS 1096 (1113)
T ss_dssp CTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSSCSC
T ss_pred CCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCCCCC
Confidence 9999999999999999999999998877 88898886 799999999999873 21112478999999999984 54
Q ss_pred H
Q 004968 688 P 688 (721)
Q Consensus 688 ~ 688 (721)
.
T Consensus 1097 ~ 1097 (1113)
T 2xt6_A 1097 S 1097 (1113)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=1.1e-55 Score=478.46 Aligned_cols=304 Identities=18% Similarity=0.264 Sum_probs=270.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCC-cc--ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEM-DL--SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~-~~--~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-ty 474 (721)
..+|+++|+++|.+++++||+|+++++|++. ++ .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 20 ~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf 99 (342)
T 2bfd_B 20 KMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQF 99 (342)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEecc
Confidence 4689999999999999999999999999973 22 458899999 9999999999999999999999999999997 69
Q ss_pred HhhHHHHHHHHHHHhhcCCc---------ceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRL---------PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~l---------pVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++|++|++|||+|++|++++ ||+++++++|. .||+|||+++|+++++++|||+|++|+|++|++.++++
T Consensus 100 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 177 (342)
T 2bfd_B 100 ADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLS 177 (342)
T ss_dssp GGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 99999999999999996655 99999998773 58999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~ 622 (721)
|++ .++|++||+|+..... ..++. +.+.+++||++++++|+|++||+||++++.|++|++.|+++ ||+++|||++
T Consensus 178 a~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~ 255 (342)
T 2bfd_B 178 CIE-DKNPCIFFEPKILYRAAAEEVPI-EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255 (342)
T ss_dssp HHH-SSSCEEEEEEGGGTTSCCEEEES-SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_pred HHh-cCCcEEEEecchhcCCCCCCCCC-cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeee
Confidence 987 5899999888543211 12232 23557889999999999999999999999999999999998 9999999999
Q ss_pred ccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004968 623 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 701 (721)
Q Consensus 623 ~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~ 701 (721)
+++|||++.+++++++++++|+|||+. .||||++|++++.++++.....++.++|++|.|++++ +++++|+|+++
T Consensus 256 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~gl~~~~ 331 (342)
T 2bfd_B 256 TIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI----FEPFYIPDKWK 331 (342)
T ss_dssp EEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred ecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH----HHHHHCcCHHH
Confidence 999999999999998888999999996 8999999999998876522245789999999999876 89999999999
Q ss_pred HHHHHHHHhh
Q 004968 702 IAATALSLLG 711 (721)
Q Consensus 702 I~~~i~~~l~ 711 (721)
|+++|+++++
T Consensus 332 I~~~i~~~l~ 341 (342)
T 2bfd_B 332 CYDALRKMIN 341 (342)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=2.6e-54 Score=467.63 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=267.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc----ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-e
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-t 473 (721)
..+|+++|+++|.+++++|++|+++++|++... .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 358999999999999999999999999997422 368899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHhhcCC--------cceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|++|||+|++|+++ +||+++++++| |.||+|||+++|+++++++|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999998655 99999998887 679999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEec----CCCcc---cc-----------cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHH
Q 004968 546 VASIDDRPVCFRYP----RGAIV---RT-----------DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 546 a~~~~~~P~~ir~~----r~~~~---~~-----------~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~ 607 (721)
|++ .++|++||+| |+... .. .++. ..+.+++||++++++|+|++||++|++++.|++|++
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~ 239 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD-GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE 239 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES-SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC-CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHH
Confidence 987 4899999887 43221 00 1222 234567899999999999999999999999999999
Q ss_pred HHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 608 LLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 608 ~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
. +|++++|||+++++|||++.+++++++++.+|+|||+. .|||+++|++++.++++.....++.++|++|.|++++
T Consensus 240 ~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~ 316 (338)
T 1qs0_B 240 E---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA 316 (338)
T ss_dssp H---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST
T ss_pred H---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH
Confidence 8 69999999999999999999999998888999999997 7999999999999887533346789999999999887
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++++|+|+++|+++|+++++
T Consensus 317 ----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 317 ----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp ----THHHHSCCHHHHHHHHHHSSC
T ss_pred ----HHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999998763
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=3.7e-28 Score=265.22 Aligned_cols=236 Identities=13% Similarity=0.080 Sum_probs=184.5
Q ss_pred cCCCCHHHHHH---HHHHHHHHHHHhHh-cCCCCCCCc---ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCch
Q 004968 91 LKSLTIKELKQ---LAVEIRSELSSIVS-KTEKSLKSS---LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163 (721)
Q Consensus 91 ~~~~~~~~l~~---la~eiR~~~~~~~~-~~~Gh~~ss---lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~ 163 (721)
.++++.+++.+ .+.++|.+...+.. ..+||++++ .|+..++++++..++.++|+|++ +|+.|+|++++|+.
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 46788888777 58888999888887 457887644 67777888888889865699998 99999999999984
Q ss_pred --hhhHHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 164 --SLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 164 --~~~~~~r~~------g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
+.|.++++. | +.++||...+ .+....+|++|+++|.|+|+|+|.++.+++++|||++|||++++|+++|+
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 668888773 2 2445553211 22345789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+.+++|+|+||+||++. + +.+...
T Consensus 187 l~~A~~~~lpvi~vv~NN~~g-i-------~~~~~~-------------------------------------------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFYA-I-------SVDYRH-------------------------------------------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSEE-T-------TEEHHH--------------------------------------------
T ss_pred HHHHHHhCcCEEEEEecCCee-e-------ccChhh--------------------------------------------
Confidence 999999999999999999962 2 111110
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEeccCCCccccccccccccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQ 385 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~H 385 (721)
..-.++...++++|||.++ .|||+|..++.++++++.+ ...++|++||++|.+++|+..++. +..|+
T Consensus 215 ~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~---~~~Yr 283 (367)
T 1umd_A 215 QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADD---DSRYR 283 (367)
T ss_dssp HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCC---GGGTS
T ss_pred ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCC---ccccC
Confidence 0001234678999999998 7899999999887776653 125789999999999999987753 44444
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.93 E-value=3.1e-25 Score=241.54 Aligned_cols=228 Identities=18% Similarity=0.179 Sum_probs=170.9
Q ss_pred cccCCCCHHHHHHHHHHH---HHH---HHHhH--hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHh
Q 004968 89 LRLKSLTIKELKQLAVEI---RSE---LSSIV--SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (721)
Q Consensus 89 ~~~~~~~~~~l~~la~ei---R~~---~~~~~--~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (721)
....+++.+++.++.+.+ |.+ +.... ++. |+++++.|+-.+.+++...++ |+|.++. .||.++|.+..
T Consensus 36 ~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~ 111 (368)
T 1w85_A 36 EAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWH 111 (368)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhc
Confidence 445678989888887755 533 21222 233 788999999888888888887 7899887 59999999999
Q ss_pred Cchhh--hHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHh
Q 004968 161 GRRSL--IHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (721)
Q Consensus 161 Gr~~~--~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A 238 (721)
|.... |..+. |...|...+ ...+...+.|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+||+|
T Consensus 112 G~~~~~~~~el~--G~~~G~~~h-~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A 188 (368)
T 1w85_A 112 GLPLYQAFLFSR--GHFHGNQIP-EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFA 188 (368)
T ss_dssp TCCHHHHHHHHH--TCGGGGCCC-TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHH
T ss_pred CCCHHHHHHHHC--CCCCCCCCC-cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHH
Confidence 97432 22222 211121111 12233456799999999999999999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccC
Q 004968 239 GYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318 (721)
Q Consensus 239 ~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 318 (721)
+.+++|+|+||+||++. + +.+... ..-.
T Consensus 189 ~~~~lpvi~vv~NN~~g-i-------~~~~~~--------------------------------------------~~~~ 216 (368)
T 1w85_A 189 GAFKAPAIFVVQNNRFA-I-------STPVEK--------------------------------------------QTVA 216 (368)
T ss_dssp HHTTCCEEEEEEECSEE-T-------TEEGGG--------------------------------------------TCSC
T ss_pred HHHCcCEEEEEEcCCcc-c-------eecccc--------------------------------------------ccCC
Confidence 99999999999999872 2 111110 0001
Q ss_pred CCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCc-ccc
Q 004968 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAE-DTQ 376 (721)
Q Consensus 319 ~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~-~ae 376 (721)
++...+++++||.++ .|||||++++.++++++++. ..++|++|+++|.+.+|+. .++
T Consensus 217 ~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~D 276 (368)
T 1w85_A 217 KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGD 276 (368)
T ss_dssp SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC
T ss_pred CCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCC
Confidence 234668999999998 78999999999999888751 2478999999999999987 544
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.93 E-value=2.2e-25 Score=242.10 Aligned_cols=231 Identities=19% Similarity=0.161 Sum_probs=171.9
Q ss_pred CccccCCCCHHHHHHHHHHH---H-----HHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHH
Q 004968 87 NPLRLKSLTIKELKQLAVEI---R-----SELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (721)
Q Consensus 87 ~p~~~~~~~~~~l~~la~ei---R-----~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (721)
.|.+..+++.++|.++.+.+ | ...++..++..|+++++.|+-.+.+++...++ |.|.|+. +||.++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 35666678888888876665 3 23333334567999999999777788877777 7999998 799999999
Q ss_pred HhCchhhhHHHHhhC-CCCCCCCC-CCCCC----CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH
Q 004968 159 LTGRRSLIHTLRKKD-GISGYTSR-SESEY----DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 159 ltGr~~~~~~~r~~g-gl~G~~~~-~es~~----d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~ 231 (721)
+.|.... ..+.++. ...|+.+. ..+.| ++++ .|++|+++|+|+|+|+|.+++++++.|||++|||++++|++
T Consensus 101 ~~G~~~~-~i~~e~~g~~~g~~~g~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~ 179 (365)
T 2ozl_A 101 TRGLSVR-EILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQI 179 (365)
T ss_dssp HTTCCHH-HHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHH
T ss_pred hcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHH
Confidence 9997443 2234443 34454432 23333 2333 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 232 YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 232 ~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
||+||+|+.|++|+|+||+||++. + +.+....
T Consensus 180 ~Ealn~A~~~~lpvi~vv~NN~~g-~-------~t~~~~~---------------------------------------- 211 (365)
T 2ozl_A 180 FEAYNMAALWKLPCIFICENNRYG-M-------GTSVERA---------------------------------------- 211 (365)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSEE-T-------TEEHHHH----------------------------------------
T ss_pred HHHHHHHHHHCcCEEEEEECCCcc-c-------CCCcccc----------------------------------------
Confidence 999999999999999999999872 2 1111100
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
...++... +++|+.++ .|||||++++.+++++|.+. +.++|+|||++|.+..|+..++
T Consensus 212 ----~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D 271 (365)
T 2ozl_A 212 ----AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271 (365)
T ss_dssp ----CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTC
T ss_pred ----cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCC
Confidence 00111122 56888887 68999999999998887541 2589999999999999987543
No 28
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.92 E-value=6.8e-26 Score=249.65 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHH---hCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~---~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
.+-.+|+++.+.+ .+.+++..-+-.+.+.-++.|.+ ++..+|+.+. +|++++++|.|+|++|.||++++.+++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G 98 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPG 98 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTH
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchH
Confidence 3456777777654 35667766655543322344544 5567899987 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcC--CCCCCcC-cHHHHHHHccCC--CcEEEeeCCHHHHHHHHHHHHH---h
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVG--SDGPTQC-GAFDITFMSCLP--NMIVMAPSDEDELVDMVATVAS---I 549 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G--~dG~TH~-~~~dia~~~~iP--nl~V~~Psd~~E~~~~l~~a~~---~ 549 (721)
+.+++|||.+ ++..++|++++...++..+ ....++| ...+. ++...| ++.|++|+|++|+.+++..|++ .
T Consensus 99 ~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~ 176 (395)
T 1yd7_A 99 FSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEK 176 (395)
T ss_dssp HHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 9999999965 5688999999875544322 1222333 44443 445555 9999999999999999999985 3
Q ss_pred CCCCEEEEecCCCc---ccccCCCC------------------CCcce--ec--------Cc------------------
Q 004968 550 DDRPVCFRYPRGAI---VRTDLPGY------------------RGIPI--EI--------GK------------------ 580 (721)
Q Consensus 550 ~~~P~~ir~~r~~~---~~~~~p~~------------------~~~~~--~~--------gk------------------ 580 (721)
.+.||+++++.... ...++|+. ..+.. +. +.
T Consensus 177 ~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~ 256 (395)
T 1yd7_A 177 YRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPR 256 (395)
T ss_dssp HTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC----------------------------------------------
T ss_pred HCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCcc
Confidence 46899999874210 00011100 00111 00 00
Q ss_pred ----------------------------eEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHH
Q 004968 581 ----------------------------GKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 632 (721)
Q Consensus 581 ----------------------------~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i 632 (721)
-++.++|+|++||+||+++..+++|++.|+++|++++|||++++||||.+.|
T Consensus 257 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i 336 (395)
T 1yd7_A 257 TVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELI 336 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHH
Confidence 0123467899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 633 RELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 633 ~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
.++++++++|+|||++. |||++.|.+.+... .++..++-.+ | .-+++++|.+.+++++
T Consensus 337 ~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 337 ERIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 99999999999999998 99999998876542 1222333222 1 2268899998887754
No 29
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.91 E-value=3.5e-23 Score=227.74 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=161.1
Q ss_pred CccccCCCCHHHHHHHHHHH---HHHHHHhHh--cC--CCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHH
Q 004968 87 NPLRLKSLTIKELKQLAVEI---RSELSSIVS--KT--EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (721)
Q Consensus 87 ~p~~~~~~~~~~l~~la~ei---R~~~~~~~~--~~--~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (721)
.|....+++.+++.++.+.+ |.+-..... .. -++.+++.|+-.+.+++-..+ .++|+|+. .|+.+++.+.
T Consensus 45 ~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~ 121 (400)
T 2bfd_A 45 NPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMY 121 (400)
T ss_dssp CGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHH
Confidence 34445678888877775544 322111111 11 135678888854554444444 47899987 8999999999
Q ss_pred hCc--hhhhHHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch
Q 004968 160 TGR--RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 160 tGr--~~~~~~~r~~------g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~ 230 (721)
.|. .+.|..++.. | +.++|+...+ .+...++|++|+++|+|+|+|+|.++++++++|||++|||++++|+
T Consensus 122 ~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~ 200 (400)
T 2bfd_A 122 RDYPLELFMAQCYGNISDLGKGRQMPVHYGCKE-RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGD 200 (400)
T ss_dssp TTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred cCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccc-cCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcCh
Confidence 997 3335555542 1 1223332111 1123457999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 231 AYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 231 ~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
+||+||+|+.+++|+|+||+||++. +.+ +...
T Consensus 201 ~~Eal~~A~~~~lpvi~vv~NN~~~-i~~-------~~~~---------------------------------------- 232 (400)
T 2bfd_A 201 AHAGFNFAATLECPIIFFCRNNGYA-IST-------PTSE---------------------------------------- 232 (400)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSEE-TTE-------EGGG----------------------------------------
T ss_pred HHHHHHHHHHHCcCEEEEEECCcee-eee-------cccc----------------------------------------
Confidence 9999999999999999999999873 211 1110
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
..-.++...+++++||.++ .|||||++++.++++++++. ..++|++|+++|.+-.|..+.+
T Consensus 233 ----~~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D 295 (400)
T 2bfd_A 233 ----QYRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSD 295 (400)
T ss_dssp ----TCSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--
T ss_pred ----cCCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCC
Confidence 0001223568899999998 88999999999999877641 1378999999998766665543
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.89 E-value=9.2e-23 Score=224.44 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=160.8
Q ss_pred cCCCCHHHHHHHHHHH---HHH---HHHhHh-cCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCch
Q 004968 91 LKSLTIKELKQLAVEI---RSE---LSSIVS-KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~---~~~~~~-~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~ 163 (721)
..+++.+++.++.+.+ |.+ +..... +.-++.+++.|+-.+.+++-..+ .++|+++. .|+.+++.+..|..
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~ 144 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVS 144 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCC
Confidence 3567888877765543 322 211111 11246678899854444444444 48999985 89998888887752
Q ss_pred hhhHHHHhh-CCCCCCCCC-CCCCC------CCc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 164 SLIHTLRKK-DGISGYTSR-SESEY------DPF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 164 ~~~~~~r~~-ggl~G~~~~-~es~~------d~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
.. ..+.++ |...+..++ ..+.| .++ ++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+
T Consensus 145 ~~-~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea 223 (407)
T 1qs0_A 145 LV-EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223 (407)
T ss_dssp HH-HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HH-HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH
Confidence 21 122222 222222221 11211 333 479999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+.|++|+|+||+||++. + +.+.... . +
T Consensus 224 l~~A~~~~lpvi~Vv~NN~~g-i-------~~~~~~~-------~-------------------~--------------- 254 (407)
T 1qs0_A 224 LTFAHVYRAPVILNVVNNQWA-I-------STFQAIA-------G-------------------G--------------- 254 (407)
T ss_dssp HHHHHHHTCCEEEEEEECSEE-T-------TEEGGGG-------T-------------------T---------------
T ss_pred HHHHHHHCcCEEEEEECCCcc-e-------eeccccc-------c-------------------C---------------
Confidence 999999999999999999873 2 1111100 0 0
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQK 377 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~ 377 (721)
-.++...++++|||.++ .|||+|++++.++++++.+. ..++|++|+++|.|++|+..++.
T Consensus 255 --~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd 316 (407)
T 1qs0_A 255 --ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDD 316 (407)
T ss_dssp --TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCC
T ss_pred --CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCC
Confidence 01223457889999998 78999999999998887642 24789999999999999988863
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.79 E-value=1.6e-17 Score=204.57 Aligned_cols=253 Identities=12% Similarity=0.082 Sum_probs=181.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS 523 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~ 523 (721)
++++...+|.++++++.|+|++|.|++++|.+..+..+.+.+. .++..++|+|++...+++.+..-.++.+..|. ++.
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~a 132 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAA 132 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTT
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHH
Confidence 7999999999999999999999999999999999888889874 45667999998885443322212445555564 456
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc----ccccCCCC---------------------CCcc
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI----VRTDLPGY---------------------RGIP 575 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~----~~~~~p~~---------------------~~~~ 575 (721)
..+|+.|++|+|++|+++++..|++. ...||+++++.... ...++|+. ...+
T Consensus 133 r~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p 212 (1231)
T 2c42_A 133 RQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHP 212 (1231)
T ss_dssp TTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSC
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCc
Confidence 68999999999999999999998653 46799999876321 11122210 0001
Q ss_pred eecCc------------------------------------------eE-EEEeCCcEEEEEechhhHHHHHHHHHHHhC
Q 004968 576 IEIGK------------------------------------------GK-VLVEGKDVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 576 ~~~gk------------------------------------------~~-vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
...|. .. .-.+++|++||+||+++..+++|++.|+++
T Consensus 213 ~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~ 292 (1231)
T 2c42_A 213 HVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAK 292 (1231)
T ss_dssp CEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTT
T ss_pred eecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 11111 11 224678999999999999999999999999
Q ss_pred CCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCC-----ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 613 GIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIG-----GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~g-----G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
|++|+||++|+++|||.+.|.+++ ++.++|+|+|++..+ .+...|...+.... ...++...| +|+-.|
T Consensus 293 G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~gl~g 366 (1231)
T 2c42_A 293 GEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYGLGS 366 (1231)
T ss_dssp TCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECCGGG
T ss_pred CCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EECCCC
Confidence 999999999999999999999987 777999999998532 25556665554321 011222222 222111
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
.-++++.|.+.+.++.+.
T Consensus 367 --------~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 367 --------KEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp --------CCCCHHHHHHHHHHHHTT
T ss_pred --------CCCCHHHHHHHHHHhhcC
Confidence 127889999988877543
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.63 E-value=6.5e-16 Score=179.31 Aligned_cols=189 Identities=13% Similarity=0.112 Sum_probs=125.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|++|+| |+.|+++++..+.. +++. ...+.|++|+++|+|+|
T Consensus 371 l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~~G~~l~~A~G 431 (603)
T 4feg_A 371 LQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS-----NRHI-------------TSNLFATMGVGIPGAIA 431 (603)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT-----CEEE-------------CCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC-----Ccee-------------cCcccccccchhHHHhh
Confidence 33334444444433 47888999999 88888866543221 1111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.+.. .+
T Consensus 432 aala~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~lp~~~vv~nN~~~-------------~~~~~-~~------- 484 (603)
T 4feg_A 432 AKLNY----PERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQY-------------GFIKD-EQ------- 484 (603)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHHHH-HH-------
T ss_pred HHHhC----CCCcEEEEeccHHHh--hhHHHHHHHHHHCcCeEEEEEECCch-------------HHHHH-HH-------
Confidence 99984 488999999999996 66899999999999999888888742 21100 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (721)
+. ... .+..+.+ +-.++...++++||+.++.+ ++.++|.+++++++ + .++|++
T Consensus 485 --~~--~~~--~~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~~gP~l 539 (603)
T 4feg_A 485 --ED--TNQ--NDFIGVE--------------FNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--QHEPVL 539 (603)
T ss_dssp --HH--HCS--SCCCSSB--------------CCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--TTSCEE
T ss_pred --HH--hcC--CCcccCc--------------CCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--CCCcEE
Confidence 00 000 0000000 01133456889999999865 57889999999998 6 589999
Q ss_pred EEEEEeccCCCccccccccccccccc
Q 004968 362 VHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 362 I~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
||+.|.+++.+++.. ..+..|+.
T Consensus 540 Iev~~~~~~~~~~~~---~~~~~~~~ 562 (603)
T 4feg_A 540 IDAVITGDRPLPAEK---LRLDSAMS 562 (603)
T ss_dssp EEEECCCCCCCCTTS---CCCCTTTS
T ss_pred EEEEeCCCCCCCccc---chhhhhhh
Confidence 999997766665433 24555554
No 33
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.60 E-value=2.4e-15 Score=137.62 Aligned_cols=106 Identities=16% Similarity=0.295 Sum_probs=87.5
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcC
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDG 665 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~ 665 (721)
+|+|++||+||+++..|++|++.|+++|++++|++++++||||.+.+.+++++++.|+|+|++..|||++.|...+..
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~-- 89 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGI-- 89 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCC--
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCC--
Confidence 678999999999999999999999999999999999999999999999999999999999999889999998765421
Q ss_pred CCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 666 LLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 666 ~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
. ++..+. .+ .| .-+++++|.+.++++++
T Consensus 90 ----~-~~~~i~---~~--~G--------~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 90 ----D-IKNKIL---KY--NG--------RHMTEDEILKSAKEILN 117 (118)
T ss_dssp ----C-CCCCCC---CB--TT--------BCCCHHHHHHHHHHHHH
T ss_pred ----C-ceeEEe---ee--CC--------eeCCHHHHHHHHHHHhh
Confidence 0 011110 01 12 13799999999999874
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.56 E-value=2.4e-14 Score=164.82 Aligned_cols=178 Identities=11% Similarity=0.088 Sum_probs=121.9
Q ss_pred cccHHHHHHHHhcccCCCCcEEEecCCc-hHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 124 SLAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
.+....+..+|...+. +++.+++|+|+ +.|++..+..+.. .+.+...+.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~~------------------~~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHVD-AGVTVVADGALTYLWLSEVMSRVKP------------------GGFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTCS-TTEEEEECSSHHHHHHHHHHTTSCC------------------SEEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhCC-CCcEEEEcCchHHHHHHHhccccCC------------------CeEECCCCCccccChHHHHH
Confidence 3555566666766654 67788899995 6678866543210 11122246799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+|+|.+ +++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+++..
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~--- 488 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVG--YSIGEFDTLVRKQLPLIVIIMNNQSW-------------GAT-LHFQQLA--- 488 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHG--GGTTHHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHHHHH---
T ss_pred HHHHHhh--CCCCeEEEEEccHHHh--CCHHHHHHHHHhCCCeEEEEEeCCcc-------------hHH-HHHHHHh---
Confidence 9999985 5689999999999997 56789999999999987777777531 211 1111000
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+.-....+.+ +-.++...++++||+.++.+ ++.++|.++++++++ .++|++|
T Consensus 489 ---------~~~~~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~li 540 (563)
T 2uz1_A 489 ---------VGPNRVTGTR--------------LENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPACI 540 (563)
T ss_dssp ---------TCTTCCCSCB--------------CCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEEE
T ss_pred ---------cCCCcccCCc--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEEE
Confidence 0000000110 01134466889999999866 689999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
|+.|.+.
T Consensus 541 ev~~~~~ 547 (563)
T 2uz1_A 541 NVAVALD 547 (563)
T ss_dssp EEECCSC
T ss_pred EEEeccc
Confidence 9999853
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.53 E-value=7e-15 Score=168.78 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=113.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|++|+| |+.|....+. +...+++ +...+.|++|+++|+|+|
T Consensus 357 ~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~-----~~~~~~~-------------~~~~~~g~mG~~l~~AiG 417 (549)
T 3eya_A 357 IHPQYLAQQISHFA-ADDAIFTCDVGTPTVWAARYLK-----MNGKRRL-------------LGSFNHGSMANAMPQALG 417 (549)
T ss_dssp BCHHHHHHHHHHHS-CTTCEEEECTTHHHHHHHHHCC-----CCSSCEE-------------ECCTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHhhC-CCCCEEEEcCcHHHHHHHHhCc-----cCCCCcE-------------EeCCCCchhhhHHHHHHH
Confidence 44444444454443 36788889999 4444432211 1001111 111255899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+..++-+.. +....
T Consensus 418 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~-----------------~~~~~ 474 (549)
T 3eya_A 418 AQATE----PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAME-----------------MKAGG 474 (549)
T ss_dssp HHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC-------------------------
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHH-----------------HHhcC
Confidence 99985 488999999999996 77899999999999977776666532110000 00000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ ......+-.++...++++||+.+..+ ++.++|.++|+++++ .++|++||
T Consensus 475 ~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 524 (549)
T 3eya_A 475 Y-------------------------LTDGTELHDTNFARIAEACGITGIRV---EKASEVDEALQRAFS--IDGPVLVD 524 (549)
T ss_dssp -----------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred C-------------------------CCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00001111234566889999999866 788999999999988 58999999
Q ss_pred EEEeccCCC
Q 004968 364 VVTEENRRA 372 (721)
Q Consensus 364 v~T~kg~G~ 372 (721)
|.|.+....
T Consensus 525 v~~~~~~~~ 533 (549)
T 3eya_A 525 VVVAKEELA 533 (549)
T ss_dssp EEBCCCCSC
T ss_pred EEecccccc
Confidence 999876543
No 36
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.53 E-value=4.2e-14 Score=162.92 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=119.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+. +++.|+.|+| |+.|.+.++..+.. .+.+...+.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~~------------------~~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIVN-SDVTLTVDMGSFHIWIARYLYTFRA------------------RQVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHCC-TTEEEEECSSHHHHHHHHTGGGCCC------------------SEEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHHHhcccCCC------------------CeEEeCCCcccccchHHHHHH
Confidence 555556666655553 5677889999 66676644321110 011112367999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |.. +.+++....+
T Consensus 432 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~~~~- 490 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGY-------------NMV-AIQEEKKYQR- 490 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBC-------------HHH-HHHHHHHHSS-
T ss_pred HHHhC----CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCch-------------hHH-HHHHHHhcCC-
Confidence 99995 489999999999996 67899999999999988888777641 211 1111100000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
..+ ...-.++...++++||+.++.+ ++.++|.++++++.+ .++|++||
T Consensus 491 -------------~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 538 (566)
T 1ozh_A 491 -------------LSG--------------VEFGPMDFKAYAESFGAKGFAV---ESAEALEPTLRAAMD--VDGPAVVA 538 (566)
T ss_dssp -------------CCS--------------CBCCCCCHHHHHHTTTSEEEEC---CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred -------------Ccc--------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0111234466889999999854 578999999999987 58999999
Q ss_pred EEEeccCC
Q 004968 364 VVTEENRR 371 (721)
Q Consensus 364 v~T~kg~G 371 (721)
+.|.++..
T Consensus 539 v~~~~~~~ 546 (566)
T 1ozh_A 539 IPVDYRDN 546 (566)
T ss_dssp EEBCCTTH
T ss_pred EEeCCCcC
Confidence 99988654
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.49 E-value=1.9e-14 Score=166.68 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=96.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~ 484 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHL-------------G 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBC-------------H
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcc-------------h
Confidence 4599999999999999995 478999999999997 67899999999999987777666531 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. +.+++..... ......++.+.. .....++...++++||+.+..+ ++.++|.++|+
T Consensus 485 ~~-~~~~~~~~~~---------~~~~~~~~~p~~----------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 541 (590)
T 1ybh_A 485 MV-MQWEDRFYKA---------NRAHTFLGDPAQ----------EDEIFPNMLLFAAACGIPAARV---TKKADLREAIQ 541 (590)
T ss_dssp HH-HHHHHHHSTT---------CCCSCBCSCGGG----------TTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHHHH
T ss_pred HH-HHHHHHhcCC---------cccccccccccc----------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 11 1111100000 000000000000 0000124466889999999855 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccCCCcc
Q 004968 350 EVASLGSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~G~~~ 374 (721)
++++ .++|++||+.|.++....|
T Consensus 542 ~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 542 TMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHh--CCCCEEEEEEecCCcccCC
Confidence 9987 4899999999999887544
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.47 E-value=4.8e-14 Score=165.36 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=118.5
Q ss_pred ccHHHHHHHHhcccCC-CCcEEE-ecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHH
Q 004968 125 LAAVELTVALHHVFHA-PVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201 (721)
Q Consensus 125 lg~vel~~aL~~vf~~-p~D~iv-~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A 201 (721)
+....+...|...+.. |+|.|+ .|+| |+.|....+.-. ..+++ ....+.|++|+++|+|
T Consensus 461 l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~-----~p~~~-------------~~sg~~G~mG~~lpaA 522 (677)
T 1t9b_A 461 IKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWR-----NPHTF-------------ITSGGLGTMGYGLPAA 522 (677)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCC-----STTCE-------------ECCCSSCCTTCHHHHH
T ss_pred cCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccC-----CCCeE-------------EeCCCcchhhchHHHH
Confidence 4444555555544432 566666 5888 555665332210 00111 1112458999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhc
Q 004968 202 LGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSS 281 (721)
Q Consensus 202 ~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~ 281 (721)
+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |.. +.+++..
T Consensus 523 iGaalA~----p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------g~~-~~~~~~~-- 580 (677)
T 1t9b_A 523 IGAQVAK----PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQ-------------GMV-TQWQSLF-- 580 (677)
T ss_dssp HHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSC-------------HHH-HHHHHHH--
T ss_pred HHHHHhC----CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCc-------------hhh-hhhhhhh--
Confidence 9999994 589999999999996 78899999999999987777777641 211 1111100
Q ss_pred hHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
| . ....+. ..-.++...++++||+.++.+ ++.++|.++|+++.+ .++|++
T Consensus 581 --~------~---~~~~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~l 630 (677)
T 1t9b_A 581 --Y------E---HRYSHT--------------HQLNPDFIKLAEAMGLKGLRV---KKQEELDAKLKEFVS--TKGPVL 630 (677)
T ss_dssp --S------T---TCCCSC--------------CCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--CSSCEE
T ss_pred --c------C---CCcccC--------------cCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHH--CCCcEE
Confidence 0 0 000000 001234567889999999866 789999999999987 589999
Q ss_pred EEEEEeccCCCcc
Q 004968 362 VHVVTEENRRAED 374 (721)
Q Consensus 362 I~v~T~kg~G~~~ 374 (721)
|||.|.++....|
T Consensus 631 Iev~~~~~~~~~p 643 (677)
T 1t9b_A 631 LEVEVDKKVPVLP 643 (677)
T ss_dssp EEEEBCSSCCCSS
T ss_pred EEEEecCCcccCC
Confidence 9999999876544
No 39
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.44 E-value=1.5e-13 Score=159.05 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=118.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+ .+++.++.|+| |+.|....+.-. .+ .+.+...+.|++|+++|+|+|
T Consensus 375 l~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~-----------------~~-~~~~~~~g~g~mG~~l~~AiG 435 (589)
T 2pgn_A 375 ASMFRAMAEVRKVQ-RPEDIIVTDIGNHTLPMFGGAILQ-----------------RP-RRLVTSMAEGILGCGFPMALG 435 (589)
T ss_dssp CCHHHHHHHHHHTC-CTTCEEEECSSTTHHHHHHHCCCS-----------------ST-TCEESCTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCchHHHHHHHhcccC-----------------CC-CcEECCCCcchhhhHHHHHHH
Confidence 44445555554444 35677888999 555655332110 00 011111256999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.. +.+++..
T Consensus 436 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~---- 491 (589)
T 2pgn_A 436 AQLAE----PNSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESY-------------GAN-WTLMNHQ---- 491 (589)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHH-HHHHHHH----
T ss_pred HHHhC----CCCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCc-------------ccc-hHHHHhh----
Confidence 99985 478999999999996 67899999999999988887777641 211 1111000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
| ... +...+-.++...++++||+.++.+ ++.++|.++++++.+ .++|++||
T Consensus 492 ~------~~~------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 542 (589)
T 2pgn_A 492 F------GQN------------------NWTEFMNPDWVGIAKAFGAYGESV---RETGDIAGALQRAID--SGKPALIE 542 (589)
T ss_dssp H------SSC------------------CSCBCCCCCHHHHHHHHTCEEEEC---TTTCCHHHHHHHHHH--HCSCEEEE
T ss_pred c------CCC------------------ccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 000 000011234567889999999854 467888999999887 48899999
Q ss_pred EEEeccCCCccc
Q 004968 364 VVTEENRRAEDT 375 (721)
Q Consensus 364 v~T~kg~G~~~a 375 (721)
+.|.++.++.+.
T Consensus 543 v~~~~~~~~~~~ 554 (589)
T 2pgn_A 543 IPVSKTQGLASD 554 (589)
T ss_dssp EECCSSSSTTTC
T ss_pred EEecCCCCcCcc
Confidence 999998876554
No 40
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.42 E-value=2.5e-13 Score=157.24 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+...+....+... |
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---~ 481 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---N 481 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS---C
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHh--chHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh---c
Confidence 5799999999999999994 488999999999997 668999999999999887777765322211100000 0
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+ .+ .+.+ .-.++...++++||+.++.+ ++.++|.++++
T Consensus 482 ----~-~~--------------------~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 519 (590)
T 1v5e_A 482 ----K-NL--------------------FGVD--------------FTDVDYAKIAEAQGAKGFTV---SRIEDMDRVMA 519 (590)
T ss_dssp ----C-SC--------------------CCCC--------------CCCCCHHHHHHHTTSEEEEE---CBHHHHHHHHH
T ss_pred ----C-CC--------------------cccc--------------CCCCCHHHHHHHcCCEEEEE---CCHHHHHHHHH
Confidence 0 00 0000 00123456789999999855 57899999999
Q ss_pred HHHhc-CCCCCEEEEEEEeccC
Q 004968 350 EVASL-GSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~-~~~~P~lI~v~T~kg~ 370 (721)
++.+. ..++|++||+.|.++.
T Consensus 520 ~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 520 EAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHhcCCCCCEEEEEEecccc
Confidence 88762 0178999999999876
No 41
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.42 E-value=2.7e-13 Score=154.83 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=112.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|+| |+.|...++. ... +. +.+...+ |++|+++|+|+|
T Consensus 353 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~--------------~~~-~~---~~~~~~g-g~~G~~l~~A~G 412 (528)
T 1q6z_A 353 LHPETVFDTLNDMA-PENAIYLNESTSTTAQMWQRLN--------------MRN-PG---SYYFCAA-GGLGFALPAAIG 412 (528)
T ss_dssp BCHHHHHHHHHHHS-CTTCEEEEECTTSHHHHHHHCC--------------CCS-SS---CEEECTT-CCTTSHHHHHHH
T ss_pred cCHHHHHHHHHhhC-CCCeEEEECCcccHHHHHHhcc--------------ccC-CC---cEECCCC-ccccchHHHHHH
Confidence 44444555554443 35667788998 6555553221 000 00 1111125 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.. +.+++....+
T Consensus 413 ~a~a~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~~~~- 471 (528)
T 1q6z_A 413 VQLAE----PERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTY-------------GAL-RWFAGVLEAE- 471 (528)
T ss_dssp HHHHC----TTSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHHHHHTCC-
T ss_pred HHHhC----CCCcEEEEECCcHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc-------------hHh-HHHHHHhcCC-
Confidence 99995 478999999999997 56899999999999998888777631 211 1111100000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
...+.+ +-..+...++++||+.++.+ ++.++|.++++++++ .++|++||
T Consensus 472 ------------~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 520 (528)
T 1q6z_A 472 ------------NVPGLD--------------VPGIDFRALAKGYGVQALKA---DNLEQLKGSLQEALS--AKGPVLIE 520 (528)
T ss_dssp ------------SCCSCB--------------CCCCCHHHHHHHHTCEEEEE---SSHHHHHHHHHHHHT--CSSCEEEE
T ss_pred ------------CcccCC--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCcEEEE
Confidence 000100 01134456889999999844 467899999999987 58999999
Q ss_pred EEEec
Q 004968 364 VVTEE 368 (721)
Q Consensus 364 v~T~k 368 (721)
+.|.+
T Consensus 521 v~~~~ 525 (528)
T 1q6z_A 521 VSTVS 525 (528)
T ss_dssp EEBCC
T ss_pred EEecC
Confidence 99975
No 42
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.41 E-value=2.1e-13 Score=157.25 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+.. +
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~--~~~~~L~~a~~~~l~~~ivv~NN~~~-------------~ 494 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTN-------------G 494 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBC-------------H
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHH--hHHHHHHHHHHhCCCeEEEEEECCcc-------------h
Confidence 5699999999999999995 478999999999997 66899999999999987777666631 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. +.+++.. | ... .+. ...+-.++...++++||+.++.+ ++.++|.++++
T Consensus 495 ~~-~~~~~~~----~------~~~----~~~------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 544 (573)
T 2iht_A 495 LI-ELYQNIG----H------HRS----HDP------------AVKFGGVDFVALAEANGVDATRA---TNREELLAALR 544 (573)
T ss_dssp HH-HHHHHHH----H------SSC----CGG------------GTBCCCCCHHHHHHHTTCEEEEC---CSHHHHHHHHH
T ss_pred hh-HHHHHHh----c------CCC----cCc------------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 11 1111100 0 000 000 00111134466899999999865 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEec
Q 004968 350 EVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (721)
++++ .++|++||+.|.+
T Consensus 545 ~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 545 KGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHT--SSSCEEEEEEBCC
T ss_pred HHHh--CCCCEEEEEECCC
Confidence 9987 5899999999988
No 43
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.41 E-value=1.9e-13 Score=157.26 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=114.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+ .+++.++.|+|...|.. + +... +.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~-----~---------~~~~---~~~-~~~~~~~~~g~mG~~l~~A~Ga 425 (563)
T 2vk8_A 365 LKQEWMWNQLGNFL-QEGDVVIAETGTSAFGI-----N---------QTTF---PNN-TYGISQVLWGSIGFTTGATLGA 425 (563)
T ss_dssp CCHHHHHHHHTTTC-CTTCEEEECTTHHHHHG-----G---------GSCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHH-----h---------hcCc---CCC-CeEEcccchhhhhhHHHHHHHH
Confidence 44455555564444 35778889999533321 0 0000 100 0011113579999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|.+.++++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+.... .
T Consensus 426 ala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~--~-- 485 (563)
T 2vk8_A 426 AFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGY-------------TIQ-KLIHGPK--A-- 485 (563)
T ss_dssp HHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHSCTT--C--
T ss_pred HHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------hhh-hhhhCCC--C--
Confidence 99998888889999999999996 78999999999999988777666631 111 0000000 0
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce---EEeccCCCCHHHHHHHHH-HHHhcCCCCCE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY---YIGPVDGHNIEDLISVLQ-EVASLGSMGPV 360 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~---~~g~vdGhd~~~l~~al~-~a~~~~~~~P~ 360 (721)
.+ .++-.++...++++||+. ++.+ ++.++|.++++ ++.+. .++|+
T Consensus 486 --------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~v---~~~~el~~al~~~a~~~-~~~p~ 534 (563)
T 2vk8_A 486 --------------------------QY-NEIQGWDHLSLLPTFGAKDYETHRV---ATTGEWDKLTQDKSFND-NSKIR 534 (563)
T ss_dssp --------------------------GG-GCCCCCCGGGHHHHTTCSSEEEEEE---CBHHHHHHHHTCTTTTS-CSSEE
T ss_pred --------------------------Cc-ccCCCCCHHHHHHHhCCCCCcEEEe---cCHHHHHHHHHHHHHhC-CCCcE
Confidence 00 011123456789999998 7644 57899999998 77652 34799
Q ss_pred EEEEEEecc
Q 004968 361 LVHVVTEEN 369 (721)
Q Consensus 361 lI~v~T~kg 369 (721)
+||++|.+.
T Consensus 535 liev~~~~~ 543 (563)
T 2vk8_A 535 MIEVMLPVF 543 (563)
T ss_dssp EEEEECCTT
T ss_pred EEEEEeCcc
Confidence 999999764
No 44
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.40 E-value=5.5e-13 Score=153.08 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=111.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+ .+++.|+.|+|...+... +... +.+ ...+...+.|++|+++|+|+|+
T Consensus 360 ~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~--------------~~~~---~~~-~~~~~~~~~g~mG~~l~~A~G~ 420 (552)
T 1ovm_A 360 LTQENFWRTLQTFI-RPGDIILADQGTSAFGAI--------------DLRL---PAD-VNFIVQPLWGSIGYTLAAAFGA 420 (552)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECTTHHHHHHT--------------TCCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhc-CCCCEEEECCchHHHHHH--------------hccc---CCC-CeEEechhhHhhhhHHHHHHHH
Confidence 44444555554444 367888899995333321 0000 110 0011113579999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+... ...
T Consensus 421 a~a~----~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~--~~~- 477 (552)
T 1ovm_A 421 QTAC----PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------TVE-RAIHGA--EQR- 477 (552)
T ss_dssp HHHC----TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHSCT--TCG-
T ss_pred HHhC----CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCC-------------eEE-EeeccC--CCC-
Confidence 9994 478999999999996 78999999999999977777666631 111 000000 000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc----eEEeccCCCCHHHHHHHHHHHHhcCCCCCE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL----YYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~----~~~g~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (721)
+ ...-.++...++++||+ .+..+ ++.++|.++++++++ .++|+
T Consensus 478 ---------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~v---~~~~~l~~al~~a~~--~~gp~ 524 (552)
T 1ovm_A 478 ---------------------------Y-NDIALWNWTHIPQALSLDPQSECWRV---SEAEQLADVLEKVAH--HERLS 524 (552)
T ss_dssp ---------------------------G-GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHHHHHHHHHHTT--CSSEE
T ss_pred ---------------------------c-ccCCCCCHHHHHHHhCCCcCCCEEEe---CCHHHHHHHHHHHHh--CCCCE
Confidence 0 01112355778999999 87744 579999999999887 58899
Q ss_pred EEEEEEecc
Q 004968 361 LVHVVTEEN 369 (721)
Q Consensus 361 lI~v~T~kg 369 (721)
+||+.|.+.
T Consensus 525 liev~~~~~ 533 (552)
T 1ovm_A 525 LIEVMLPKA 533 (552)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCcc
Confidence 999999874
No 45
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.40 E-value=9.7e-14 Score=161.48 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=113.7
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+ .+++.|+.|+| |+.|....+.-+. .++ | ...-+.|++|+++|+|+|
T Consensus 393 ~~~~~~~~~L~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~-----~~~------~-------~~~g~~G~~G~~l~~AiG 453 (616)
T 2pan_A 393 VKPQRVYEEMNKAF-GRDVCYVTTIGLSQIAAAQMLHVFK-----DRH------W-------INCGQAGPLGWTIPAALG 453 (616)
T ss_dssp BCHHHHHHHHHHHS-CTTEEEEECSSHHHHHHHHHCCCCS-----TTS------E-------EECTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCcEEEEcCcHHHHHHHHhcccCC-----CCe------E-------EcCCCcccccchHHHHHH
Confidence 44444555554444 24666778999 5556553221100 011 1 111245999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+.+++|+++||.||+.. | +.+.+++....+
T Consensus 454 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~-~~~~~~~~~~~~- 512 (616)
T 2pan_A 454 VCAAD----PKRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYL-------------G-LIRQSQRAFDMD- 512 (616)
T ss_dssp HHHHC----TTCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBC-------------H-HHHHHGGGGTCC-
T ss_pred HHHhC----CCCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcc-------------h-HHHHHHHHhcCC-
Confidence 99995 488999999999997 67899999999999987777777632 1 111111110000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh----cCCCCC
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS----LGSMGP 359 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~----~~~~~P 359 (721)
.+. . ....+..... ......+...++++||+.++.+ ++.++|.++|+++++ . ++|
T Consensus 513 ---~~~--~--~~~~~~~~~~---------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~--~gp 571 (616)
T 2pan_A 513 ---YCV--Q--LAFENINSSE---------VNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQY--RVP 571 (616)
T ss_dssp ---CSC--B--CCCCCTTCGG---------GTTCCCCHHHHHHHTTCEEEEE---CSGGGHHHHHHHHHHHHHHH--CSC
T ss_pred ---ccc--c--cccccccccc---------CCCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHhhcccC--CCc
Confidence 000 0 0000000000 0000123456889999999865 578899999988765 3 789
Q ss_pred EEEEEEEeccCCC
Q 004968 360 VLVHVVTEENRRA 372 (721)
Q Consensus 360 ~lI~v~T~kg~G~ 372 (721)
++||+.|.++.-.
T Consensus 572 ~lIev~~~~~~~~ 584 (616)
T 2pan_A 572 VVVEVILERVTNI 584 (616)
T ss_dssp EEEEEEBCSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999988743
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.36 E-value=8.1e-13 Score=152.16 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~-------------~ 467 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGY-------------V 467 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------H
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcc-------------e
Confidence 4689999999999999984 478999999999996 77899999999999877666666531 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc-----eEEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL-----YYIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~-----~~~g~vdGhd~~~l 344 (721)
.. +.++ ...| .+.-.++...++++||+ .++.+ ++.++|
T Consensus 468 ~~-~~~~----~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el 510 (566)
T 2vbi_A 468 IE-IAIH----DGPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKEL 510 (566)
T ss_dssp HH-HTTS----CCGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHHH
T ss_pred EE-Eeec----cCCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHHH
Confidence 11 0000 0000 00112345678999999 88865 689999
Q ss_pred HHHHHHHHhcCCCCCEEEEEEEeccCC
Q 004968 345 ISVLQEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 345 ~~al~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
.++++++.+. .++|++||++|.+...
T Consensus 511 ~~al~~a~~~-~~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 511 TEAIARAKAN-TRGPTLIECQIDRTDC 536 (566)
T ss_dssp HHHHHHHHHC-CSSCEEEEEECCTTCC
T ss_pred HHHHHHHHhc-CCCcEEEEEEeCcccC
Confidence 9999999872 2789999999987653
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.34 E-value=1.2e-12 Score=150.80 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=91.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~-------------~ 483 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGY-------------T 483 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------H
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCch-------------H
Confidence 5699999999999999994 489999999999996 67899999999999977777766541 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-----EEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-----YIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-----~~g~vdGhd~~~l 344 (721)
.. +.+... ... + .+.-.++...++++||+. +..+ ++.++|
T Consensus 484 ~~-~~~~~~--~~~----------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el 528 (570)
T 2vbf_A 484 VE-REIHGP--TQS----------------------------Y-NDIPMWNYSKLPETFGATEDRVVSKIV---RTENEF 528 (570)
T ss_dssp HH-HHHSCT--TCG----------------------------G-GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHHHH
T ss_pred HH-HHHhcc--CCC----------------------------c-cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHHHH
Confidence 11 000000 000 0 011123457789999997 6645 679999
Q ss_pred HHHHHHH-HhcCCCCCEEEEEEEeccC
Q 004968 345 ISVLQEV-ASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 345 ~~al~~a-~~~~~~~P~lI~v~T~kg~ 370 (721)
.++++++ .+ .++|++||+.|.+..
T Consensus 529 ~~al~~a~~~--~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 529 VSVMKEAQAD--VNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHC--TTSEEEEEEECCTTC
T ss_pred HHHHHHHHhc--CCCcEEEEEEcCccc
Confidence 9999984 55 578999999998653
No 48
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.34 E-value=8.6e-12 Score=143.52 Aligned_cols=127 Identities=9% Similarity=0.043 Sum_probs=93.4
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+|+| ++++|||++|||+++ |.+++|++|+++++|+++||.||+. .++..++. ..
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~----~~ 487 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDL----SG 487 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCT----TS
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHH----hc
Confidence 458999999999999998 478999999999996 7789999999999998888888873 11110000 00
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
+.. . . +. ...-.++...++++||+.+..+ ++.++|.++|
T Consensus 488 ~~~------~----------------~---~~-------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 526 (564)
T 2q28_A 488 AGA------P----------------S---PT-------------DLLHHARYDKLMDAFRGVGYNV---TTTDELRHAL 526 (564)
T ss_dssp SCC------C----------------C---TT-------------BCCTTCCGGGGGGGGTCEEEEE---CSHHHHHHHH
T ss_pred cCC------c----------------c---cc-------------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 000 0 0 00 0000134577899999999866 6899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|++||+.|.+..
T Consensus 527 ~~a~~--~~~p~liev~~~~~~ 546 (564)
T 2q28_A 527 TTGIQ--SRKPTIINVVIDPAA 546 (564)
T ss_dssp HHHHH--HTSCEEEEEEBCTTS
T ss_pred HHHHh--CCCCEEEEEEecccc
Confidence 99886 488999999998754
No 49
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.33 E-value=1.7e-12 Score=149.63 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=110.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+. +++.|+.|+|...|....+. ++.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~-----------------~~~~-~~~~~~~~~g~~G~~l~~A~G~ 425 (568)
T 2wvg_A 365 LVNAEIARQVEALLT-PNTTVIAETGDSWFNAQRMK-----------------LPNG-ARVEYEMQWGHIGWSVPAAFGY 425 (568)
T ss_dssp CCHHHHHHHHHTTCC-TTEEEEECSSHHHHHHHTCC-----------------CCTT-CEEECCTTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHhhcc-----------------cCCC-CeEEeCCCcchhhhHHHHHHHH
Confidence 444555555544442 56677889995344331111 0000 0001112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|. ++++||+++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.++ ...|
T Consensus 426 ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~-------------~~~-~~~~----~~~~ 481 (568)
T 2wvg_A 426 AVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGY-------------TIE-VMIH----DGPY 481 (568)
T ss_dssp HHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------HHH-HTTS----CCGG
T ss_pred HHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------eEe-eeec----cCCC
Confidence 9995 489999999999996 78999999999999987776665531 111 0000 0000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc---------eEEeccCCCCHHHHHHHHHHHHhcC
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL---------YYIGPVDGHNIEDLISVLQEVASLG 355 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~---------~~~g~vdGhd~~~l~~al~~a~~~~ 355 (721)
. +.-.++...++++||+ .+..+ ++.++|.++++++.+.
T Consensus 482 ~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v---~~~~el~~al~~a~~~- 528 (568)
T 2wvg_A 482 N-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKA---KTGGELAEAIKVALAN- 528 (568)
T ss_dssp G-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---SBHHHHHHHHHHHHHC-
T ss_pred c-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceEEe---CCHHHHHHHHHHHHhc-
Confidence 0 0001233557788898 77744 6899999999999872
Q ss_pred CCCCEEEEEEEeccCC
Q 004968 356 SMGPVLVHVVTEENRR 371 (721)
Q Consensus 356 ~~~P~lI~v~T~kg~G 371 (721)
.++|++||+.|.++..
T Consensus 529 ~~gp~liev~~~~~~~ 544 (568)
T 2wvg_A 529 TDGPTLIECFIGREDC 544 (568)
T ss_dssp CSSCEEEEEECCTTCC
T ss_pred CCCcEEEEEEcCcccc
Confidence 2789999999987643
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.33 E-value=3e-12 Score=148.58 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=92.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+|+|. +++|||++|||+++ |.+++|++|+++++|+++||.||+..++
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lp~~ivv~NN~~~~i------------ 513 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFY--HDLNGLLAAKKLGIPLTVILVNNDGGGI------------ 513 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHH--HTGGGGHHHHHHCCCEEEEEEECSSCGG------------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHH--hHHHHHHHhhhcCCCeEEEEEeCCCCcc------------
Confidence 4577899999999999993 68999999999996 6678999999999998888877754211
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
. +.+...+....|. ++......++...++++||+.+..+ ++.++|.++|+
T Consensus 514 -~-~~~~~~q~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 563 (604)
T 2x7j_A 514 -F-SFLPQASEKTHFE-------------------------DLFGTPTGLDFKHAAALYGGTYSCP---ASWDEFKTAYA 563 (604)
T ss_dssp -G-GGSGGGSCHHHHH-------------------------HHTTCCCCCCTHHHHHHTTCEEECC---SSHHHHHHHCC
T ss_pred -c-ccCCCCccchhhH-------------------------hhccCCCCCCHHHHHHHcCCeEEec---CCHHHHHHHHH
Confidence 1 0111111001110 1111111245577899999999855 57999999998
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++||+.|.++.
T Consensus 564 ~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 564 PQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCS--SCCEEEEEEECCHHH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 8876 589999999997653
No 51
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.30 E-value=9.1e-12 Score=143.48 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=93.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+|+| ++++||+++|||+++ |.+++|++|+++++|+++||.||+. .+....+. .
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~-----~ 491 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADP-----Q 491 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCS-----B
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHh-----h
Confidence 458999999999999998 478999999999996 7899999999999999888888873 11110000 0
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
+.- . . + . ..-.++...++++||+.+..+ ++.++|.++|
T Consensus 492 ~~~------~----------------~---~-------------~-~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 529 (568)
T 2c31_A 492 PGV------I----------------S---C-------------T-RLTRGRYDMMMEAFGGKGYVA---NTPAELKAAL 529 (568)
T ss_dssp TTB------C----------------C---T-------------T-BCCCCCHHHHHHTTTCEEEEE---SSHHHHHHHH
T ss_pred cCC------c----------------c---c-------------C-cCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 000 0 0 0 0 000123456789999999866 6899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
+++.+ .++|++||+.|.+...
T Consensus 530 ~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 530 EEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHh--CCCCEEEEEEeccccC
Confidence 99886 4889999999987643
No 52
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.27 E-value=5e-12 Score=145.56 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |++++|++|+++++|+++||.||+.. +
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~-------------~ 480 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------E 480 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBC-------------H
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCC-------------c
Confidence 4589999999999999995 478999999999997 99999999999999977776666531 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. . +....| ..+-.++...++++||+.+..+ ++.++|.++|+
T Consensus 481 ~~~~-~---~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 524 (565)
T 2nxw_A 481 MLRT-F---QPESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAALD 524 (565)
T ss_dssp HHHH-H---CTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHHH
T ss_pred EEee-e---cccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHHH
Confidence 1100 0 000000 0111234466899999999865 57899999999
Q ss_pred HHHhcCCCCCE-EEEEEEecc
Q 004968 350 EVASLGSMGPV-LVHVVTEEN 369 (721)
Q Consensus 350 ~a~~~~~~~P~-lI~v~T~kg 369 (721)
++.+ .++|+ +||+.|.+.
T Consensus 525 ~a~~--~~gp~~liev~~~~~ 543 (565)
T 2nxw_A 525 KAFA--TRGRFQLIEAMIPRG 543 (565)
T ss_dssp HHHH--CCSSCEEEEEECCTT
T ss_pred HHHh--cCCCeEEEEEEcccc
Confidence 9987 47898 999999764
No 53
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.24 E-value=8.9e-12 Score=143.85 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhh
Q 004968 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSS 273 (721)
Q Consensus 194 ~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~ 273 (721)
+|.++|+|+|+|+ ++++|||++|||+|+ |.+++|++|+++++|+++||.||+.. |.. +
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~-------------g~~-~ 495 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGG-------------GIF-S 495 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcC-------------ccc-c
Confidence 3447999999964 378999999999996 88899999999999999999999752 211 1
Q ss_pred hhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh
Q 004968 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (721)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~ 353 (721)
.+...+..+.|.+. ......++...++++||+.+..+ ++.++|.++|+++++
T Consensus 496 ~~~~~~~~~~~~~~-------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFESL-------------------------FGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT
T ss_pred ccccccccchhhhh-------------------------ccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh
Confidence 11000000011000 00001245677899999999866 689999999999987
Q ss_pred cCCCCCEEEEEEEeccCCCcc
Q 004968 354 LGSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 354 ~~~~~P~lI~v~T~kg~G~~~ 374 (721)
.++|++|||.|.+.....+
T Consensus 548 --~~gp~liev~~~~~~~~~~ 566 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKAN 566 (578)
T ss_dssp --SSSEEEEEEC---------
T ss_pred --CCCCEEEEEECCccccHHH
Confidence 5899999999987654443
No 54
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.20 E-value=9.5e-12 Score=142.96 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=90.0
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+ +|+|+|+|+| + +++|||++|||+|+ |..++|++|+++++|+++||.||+..++ .+.
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~----------~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQI----------FSL 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCc----------ccC
Confidence 467777 9999999998 2 78999999999995 8889999999999999999999885211 110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+ ...+ ..+ +.+....-.++...++++||+.+..+ ++.++|.++|++
T Consensus 478 ~----~~~~---~~~------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~ 523 (556)
T 3hww_A 478 L----PTPQ---SER------------------------ERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFAD 523 (556)
T ss_dssp ------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHHH
T ss_pred C----CCcc---hhH------------------------HHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHHH
Confidence 0 0000 000 00000011245677899999999865 688999999999
Q ss_pred HHhcCCCCCEEEEEEEecc
Q 004968 351 VASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg 369 (721)
+++ .++|++|||.|.+.
T Consensus 524 a~~--~~gp~liev~~~~~ 540 (556)
T 3hww_A 524 AWR--TPTTTVIEMVVNDT 540 (556)
T ss_dssp HTT--SSSEEEEEEECCSS
T ss_pred HHh--CCCCEEEEEECCcc
Confidence 987 58999999999653
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.76 E-value=9.7e-09 Score=126.87 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCeEEEEEcCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHh
Q 004968 214 RECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (721)
Q Consensus 214 ~~~VvaviGDG-al~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~ 292 (721)
++.||++.||| +++ |.+++|.+|..++.|+++||.||+..++..++.+...+.+....+
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~------------------ 1012 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKF------------------ 1012 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBT------------------
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeee------------------
Confidence 37899999999 786 778899999999999999999999754433333333222321100
Q ss_pred hhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
...|. ....++...+++++|+.|+..+.- .+.+++.++|+++.+ .+||++|++.+..
T Consensus 1013 ---~~~g~--------------~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1013 ---AAAGK--------------RTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYATC 1070 (1231)
T ss_dssp ---BTTCC--------------SSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECCC
T ss_pred ---cccCC--------------CCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeecC
Confidence 00000 001134566889999999866544 599999999999998 5899999999853
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.94 E-value=0.11 Score=59.59 Aligned_cols=113 Identities=10% Similarity=0.000 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++- ...|++++.+|.|+|...-+| +| .|+.+.+..++.-| ..+...++|++++...... .|. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 5555 599999999999999985444 33 35778777777666 4556779999988743333 232 235555556
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+.+.+++++..++..|+.. ..+||+| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788888776 67778888888888877763 2379999 99875
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.46 E-value=0.75 Score=52.22 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
.+..+++.+.|.+..- +.++. .+|+..+ +.+.+. +=|++.+ ..|++++.+|.|+|.. |...+| .|+.
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg----~PG~~~~~l~~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 75 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFG----LHGAHIDTIFQACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAG 75 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEE----CCCGGGHHHHHHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHCCC--CEEEE----CCCCchHHHHHHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 3456666666655431 23333 3344332 445443 4577774 9999999999999997 544343 3587
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~-~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
+....++..| ..+...++|++++...... .|. ..||. .....+++.+-.+ .+...+++++...+..|+..
T Consensus 76 pG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~--~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~ 151 (563)
T 2uz1_A 76 GGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET--NTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALS 151 (563)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS--CCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc--hhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcC
Confidence 7777667666 3566779999988744333 232 23666 6666788887766 45556777777777777652
Q ss_pred -CCCCEEEEecCC
Q 004968 550 -DDRPVCFRYPRG 561 (721)
Q Consensus 550 -~~~P~~ir~~r~ 561 (721)
..+|++|-+|..
T Consensus 152 ~~~GPV~l~iP~d 164 (563)
T 2uz1_A 152 APRGPVLLDLPWD 164 (563)
T ss_dssp SSCCCEEEEEEHH
T ss_pred CCCceEEEEeCHH
Confidence 348999998876
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.09 E-value=0.68 Score=52.63 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHh
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSA 476 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~ 476 (721)
-.+++.+.|.+. .-+-+... +|+.-+ +.+.+ ++ |++.+ ..|++++.+|.|+|.. |...+| .|+.+
T Consensus 13 ~a~~l~~~L~~~---GV~~vfg~---PG~~~~~l~~al~~--~~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGp 83 (566)
T 1ozh_A 13 GADLVVSQLEAQ---GVRQVFGI---PGAKIDKVFDSLLD--SSIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGP 83 (566)
T ss_dssp HHHHHHHHHHHH---TCCEEEEE---CCTTTHHHHHHGGG--SSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTH
T ss_pred HHHHHHHHHHHC---CCCEEEEc---CCCchHHHHHHHHh--CCCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccCh
Confidence 356666666554 23333332 233322 33433 33 67765 9999999999999997 544343 45887
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----C
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----D 550 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~ 550 (721)
....++.-| ..+...++|++++...... .|. ..||......+++.+..+. +...+++++...+..|+.. .
T Consensus 84 G~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~r 159 (566)
T 1ozh_A 84 GCSNLITGM-ATANSEGDPVVALGGAVKRADKAK--QVHQSMDTVAMFSPVTKYA-IEVTAPDALAEVVSNAFRAAEQGR 159 (566)
T ss_dssp HHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEE-EECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--CcccccCHHHHHHHHhheE-EEcCCHHHHHHHHHHHHHHHhcCC
Confidence 776666655 4556779999888743332 232 3467666678888877664 5556777777777776652 2
Q ss_pred CCCEEEEecCC
Q 004968 551 DRPVCFRYPRG 561 (721)
Q Consensus 551 ~~P~~ir~~r~ 561 (721)
.+||+|-+|..
T Consensus 160 ~GPV~l~iP~d 170 (566)
T 1ozh_A 160 PGSAFVSLPQD 170 (566)
T ss_dssp CCEEEEEEEHH
T ss_pred CCeEEEEeChh
Confidence 58999998876
No 59
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.07 E-value=0.69 Score=52.86 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
+..+++.+.|.+. .-+-+.. .+|+.-+ +.+.+ .++ |++. ...|++++.+|.|+|.. |...+| .|+.
T Consensus 13 ~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 84 (590)
T 1ybh_A 13 KGADILVEALERQ---GVETVFA---YPGGASMEIHQALTR-SSSIRNVL-PRHEQGGVFAAEGYARSSGKPGICIATSG 84 (590)
T ss_dssp EHHHHHHHHHHTT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred cHHHHHHHHHHHc---CCCEEEE---cCCCchHHHHHHHhc-cCCccEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccC
Confidence 4455555555432 2333333 3344333 34433 343 6665 48999999999999997 544444 4587
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---- 549 (721)
+....++--| ..+...++||+++...... .|. ..+|......+++.+-.+ .+...+++++..++..|+..
T Consensus 85 pG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~ 160 (590)
T 1ybh_A 85 PGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSG 160 (590)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhC
Confidence 7776666655 4556789999888743322 233 235655666788888776 45567788899999888864
Q ss_pred CCCCEEEEecCCC
Q 004968 550 DDRPVCFRYPRGA 562 (721)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 161 ~~GPV~l~iP~dv 173 (590)
T 1ybh_A 161 RPGPVLVDVPKDI 173 (590)
T ss_dssp SCCEEEEEEEHHH
T ss_pred CCceEEEEeCcch
Confidence 2479999888753
No 60
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.01 E-value=1.6 Score=49.52 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
+..+++.+.|.+. .-+-+.. ++|+.-+ +.+.+ .++ |++. ...|++++.+|.|+|.. | ..+| .|+.
T Consensus 4 ~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsG 74 (566)
T 2vbi_A 4 TVGMYLAERLVQI---GLKHHFA---VAGDYNLVLLDQLLL-NKDMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFS 74 (566)
T ss_dssp BHHHHHHHHHHHH---TCSEEEE---CCCTTTHHHHHHHHT-CTTSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTT
T ss_pred CHHHHHHHHHHHc---CCCEEEe---CCCCccHHHHHHHhc-CCCCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCC
Confidence 4556666666554 2333333 3344333 33433 233 6766 49999999999999986 8 5444 4588
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc------HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG------AFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~------~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~ 547 (721)
+....++.-| ..+...++|++++...... .+.+-..||. .....+++.+-.+. +.+.+++++...+..|+
T Consensus 75 pG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~ 152 (566)
T 2vbi_A 75 VGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVI 152 (566)
T ss_dssp TTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHH
Confidence 8777777666 3567789999988743333 2332223431 13467888776653 33344454444444444
Q ss_pred H---hCCCCEEEEecCCC
Q 004968 548 S---IDDRPVCFRYPRGA 562 (721)
Q Consensus 548 ~---~~~~P~~ir~~r~~ 562 (721)
. ...+|++|-+|...
T Consensus 153 ~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 153 RTALRERKPAYLDIACNI 170 (566)
T ss_dssp HHHHHHTCCEEEEEETTT
T ss_pred HHHHhCCCCEEEEechhh
Confidence 3 12499999998865
No 61
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=91.95 E-value=1.6 Score=49.46 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc----
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (721)
|++-+ ..|++++.+|.|+|.. | ..+| .|+.+....++.-| ..+...+.||+++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 77765 9999999999999976 8 4333 45888777777666 4567889999988743333 2333233442
Q ss_pred --HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 516 --~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.....+++.+-.+. +...+++++...+..|+.. ..+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 13467888877663 4445666666666555441 2499999998764
No 62
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=91.24 E-value=1.3 Score=50.94 Aligned_cols=149 Identities=8% Similarity=-0.029 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE--Eec
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC--IIP 474 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~--~ty 474 (721)
+..+++.+.|.+ ..=+.++. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. |-+|.+ .|+
T Consensus 28 ~~a~~l~~~L~~---~GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~Aa~~A~GyAr~tgg~~~v~~~Ts 99 (616)
T 2pan_A 28 RAVDAAMYVLEK---EGITTAFG---VPGAAINPFYSAMRK-HGGIRHIL-ARHVEGASHMAEGYTRATAGNIGVCLGTS 99 (616)
T ss_dssp EHHHHHHHHHHH---TTCCEEEE---CCCGGGHHHHHHHHH-HCCCEEEE-CSSHHHHHHHHHHHHHHSTTCCEEEEECS
T ss_pred cHHHHHHHHHHH---CCCCEEEE---CCCCccHHHHHHHHh-cCCCcEEe-eCCHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 445566555543 23343433 3344332 44443 344 5655 59999999999999997 455543 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++..| ..+.+.+.|++++...... .+. | .+|......+++.+-.+.. ...+++++..+++.|+..
T Consensus 100 GpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~-~-~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~ 175 (616)
T 2pan_A 100 GPAGTDMITAL-YSASADSIPILCITGQAPRARLHK-E-DFQAVDIEAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRS 175 (616)
T ss_dssp THHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT-T-CTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc-c-cccccCHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhc
Confidence 88777677766 4667789998888733222 332 2 2444444578887776644 446678888888888764
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 176 ~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 176 GRPGPVLVDLPFDV 189 (616)
T ss_dssp SSCCCEEEEEEHHH
T ss_pred CCCceEEEEcchhh
Confidence 2579999887653
No 63
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.18 E-value=1.2 Score=50.52 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=89.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
..+..+++.+.|.+.. -+-++. .+|+.-+ +.+.+. +.+.+=....|++++.+|.|+|.. |...+| .|+
T Consensus 20 ~~~~a~~lv~~L~~~G---V~~vfg---~PG~~~~~l~~al~~~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~Ts 92 (565)
T 2nxw_A 20 HMKLAEALLRALKDRG---AQAMFG---IPGDFALPFFKVAEET-QILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTY 92 (565)
T ss_dssp CCBHHHHHHHHHHHTT---CCCEEE---CCCGGGHHHHHHHHHH-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred CcCHHHHHHHHHHHcC---CCEEEE---CCCcchHHHHHHHHhC-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3567777777766532 232332 2344322 444432 444444569999999999999997 544333 458
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCC-cCc--HH-HHHHHccCCCcEEEeeCCHHHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPT-QCG--AF-DITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~T-H~~--~~-dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~ 548 (721)
.+....++.-| ..+...++|++++...... .|.+... |+. .. ...+++.+-.+.. ...+++++...+..|+.
T Consensus 93 GpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~ 170 (565)
T 2nxw_A 93 GAGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPAKAPAEIARVLG 170 (565)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHHHHHHHHHHHHH
Confidence 77776666655 4566789999988743322 3433333 332 22 3578887766543 33444444444444443
Q ss_pred h---CCCCEEEEecCCC
Q 004968 549 I---DDRPVCFRYPRGA 562 (721)
Q Consensus 549 ~---~~~P~~ir~~r~~ 562 (721)
. ..+|++|-+|+..
T Consensus 171 ~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 171 AARAQSRPVYLEIPRNM 187 (565)
T ss_dssp HHHHHTCCEEEEEEGGG
T ss_pred HHHhCCCCEEEECChhh
Confidence 1 3689999999654
No 64
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.04 E-value=0.45 Score=54.21 Aligned_cols=149 Identities=11% Similarity=0.014 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc-Ch---HHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee-E-EEec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-SL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP-F-CIIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~-~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~-~~ty 474 (721)
.+..+++.+.|.+. .=+-+.. .+|+. -+ +.+. +=|++- ...|++++-+|-|+|...-+| + +.|+
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~~l~~al~---~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (573)
T 2iht_A 12 PTAAHALLSRLRDH---GVGKVFG---VVGREAASILFDEVE---GIDFVL-TRHEFTAGVAADVLARITGRPQACWATL 81 (573)
T ss_dssp CCHHHHHHHHHHHT---TCCEEEE---CCCGGGGTCCSCSST---TCEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECT
T ss_pred ccHHHHHHHHHHHC---CCCEEEE---ecCCcchhHHHHHHc---CCeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 45566666666543 2333333 22333 22 3333 346665 489999999999999974444 3 3468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++.-| ..+...+.|++++...... .|.. ..||......+++.+..+. +...+++++...+..|+..
T Consensus 82 GpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~ 158 (573)
T 2iht_A 82 GPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKYA-VELQRPHEITDLVDSAVNAAMT 158 (573)
T ss_dssp THHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHTB
T ss_pred CchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhEE-EEcCCHHHHHHHHHHHHHHHhc
Confidence 88877777766 4667789999988743332 2321 3577777778898887664 4556777777777777753
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 159 ~~~GPV~l~iP~dv 172 (573)
T 2iht_A 159 EPVGPSFISLPVDL 172 (573)
T ss_dssp SSCCCEEEEEEHHH
T ss_pred CCCceEEEEecchH
Confidence 2479999888654
No 65
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.03 E-value=1.3 Score=50.62 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=89.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+-+.. ++|+.-+ +.+.+..++ |++-+ .-|++++-+|.|.|.. |...+| .|+
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~Ts 83 (603)
T 4feg_A 11 ILAGAAVIKVLEAW---GVDHLYG---IPGGSINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSA 83 (603)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECT
T ss_pred eeHHHHHHHHHHHC---CCCEEEE---eCCCchHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecC
Confidence 45556666665443 3333332 3344332 444443233 77764 8999999999999986 544444 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---h
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---I 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~ 549 (721)
.+....++.-| ..+...+.||+++...... .|.+ .+|......+++.+-.+.. ...+++++...+..|+. .
T Consensus 84 GpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~ 159 (603)
T 4feg_A 84 GPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD--TFQEMNENPIYADVADYNV-TAVNAATLPHVIDEAIRRAYA 159 (603)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCGGGGTTTCSEEE-ECCCSTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC--ccccccHHHHhhhhceEEE-EcCCHHHHHHHHHHHHHHHhc
Confidence 88777666655 5667889999988732222 2332 3444444467777665533 33344445444444443 1
Q ss_pred CCCCEEEEecCCC
Q 004968 550 DDRPVCFRYPRGA 562 (721)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (721)
..+|++|-+|...
T Consensus 160 ~~GPV~l~iP~dv 172 (603)
T 4feg_A 160 HQGVAVVQIPVDL 172 (603)
T ss_dssp HTSEEEEEEETTG
T ss_pred CCCCEEEEeChhh
Confidence 4689999998764
No 66
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=90.99 E-value=1.8 Score=50.38 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .=+.++. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. |...+| .|+
T Consensus 82 ~~~a~~lv~~L~~~---GV~~vFg---~PG~~~~pl~dal~~-~~~i~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~Ts 153 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQ---NVDTVFG---YPGGAILPVYDAIHN-SDKFNFVL-PKHEQGAGHMAEGYARASGKPGVVLVTS 153 (677)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHTTT-CSSSEEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCHHHHHHHHHHHc---CCCEEEE---ecCccHHHHHHHHHh-CCCCeEEE-eCChHHHHHHHHHHHHHHCCCEEEEECC
Confidence 45666776666543 3333333 3344433 22222 233 6665 49999999999999997 644343 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++..| ..+...++||+++...... .|. ..+|......+++.+-.+.+ ...+++++...+..|+..
T Consensus 154 GpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~tk~~~-~v~~~~~i~~~i~~A~~~A~~ 229 (677)
T 1t9b_A 154 GPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKWNV-MVKSVEELPLRINEAFEIATS 229 (677)
T ss_dssp THHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSEEE-ECCSGGGHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhheeEEE-EcCCHHHHHHHHHHHHHHHhh
Confidence 88777666665 4556779999988743322 232 23566666678887776644 446788888888888763
Q ss_pred -CCCCEEEEecCC
Q 004968 550 -DDRPVCFRYPRG 561 (721)
Q Consensus 550 -~~~P~~ir~~r~ 561 (721)
..+||+|-+|..
T Consensus 230 grpGPV~l~lP~D 242 (677)
T 1t9b_A 230 GRPGPVLVDLPKD 242 (677)
T ss_dssp SSCCEEEEEEEHH
T ss_pred CCCceEEEEcCHH
Confidence 357999998854
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=90.75 E-value=2.1 Score=48.34 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=80.9
Q ss_pred HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC
Q 004968 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD 509 (721)
Q Consensus 435 ~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d 509 (721)
+.+.+. |+ |++.+ ..|++++-+|-|+|.. |...+| .|+.+....++.-| ..+...+.||+++...... .|.
T Consensus 34 dal~~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~- 109 (549)
T 3eya_A 34 DSLNRM-GTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS- 109 (549)
T ss_dssp HHHHHH-CSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS-
T ss_pred HHHHhc-CCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC-
Confidence 444443 44 67764 8999999999999987 544443 46888777666655 4667789999988733222 232
Q ss_pred CCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
..+|......+++.+-.+. ....+++++...+..|+. ...+|++|-+|...
T Consensus 110 -~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 163 (549)
T 3eya_A 110 -GYFQETHPQELFRECSHYC-ELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDV 163 (549)
T ss_dssp -CCTTCCCHHHHTSTTCSEE-EECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred -CCCCccCHHHHHhhhhheE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhH
Confidence 2355555667888777654 445566666666666654 24689999888643
No 68
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=89.97 E-value=1.3 Score=50.41 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+.+.. .+|+..+ +.+.+ .++ |++- ...|++++.+|.|+|.. | ..+| .|+
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFG---VPGDYNLQFLDQIIS-REDMKWIG-NANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHHc---CCCEEEE---CCCcchHHHHHHHhc-CCCCeEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 45566666666543 3333333 3344333 33433 344 5555 59999999999999954 8 4444 458
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH------HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~------~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
.+....++.-| ..+...++|++++...... .+.+...||.. +...+++.+..+....+ + +++...+..|
T Consensus 96 GpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~~~~~~l~~A 172 (570)
T 2vbf_A 96 GVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-ENATYEIDRV 172 (570)
T ss_dssp THHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-TTHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-ccHHHHHHHH
Confidence 88877777766 4667789999988743322 23233344411 13567787776654444 3 5666665555
Q ss_pred HHh---CCCCEEEEecCCC
Q 004968 547 ASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 547 ~~~---~~~P~~ir~~r~~ 562 (721)
++. ..+||+|-+|...
T Consensus 173 ~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 173 LSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp HHHHHHHCCCEEEEEEHHH
T ss_pred HHHHhhCCCCEEEEcchhh
Confidence 542 3489999888653
No 69
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=87.72 E-value=3.5 Score=46.58 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcC-CCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHH
Q 004968 407 FIEALVMEAEKD-KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (721)
Q Consensus 407 ~~~~L~~~~~~d-~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ 479 (721)
.++.|.+.+++. =+-+.. .+|+..+ +.+.+ .++ |++- ..-|+++.-+|-|+|.. |...+| .|+.+...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 455566655442 233332 3344433 34433 354 6665 47899999999999986 644444 46888777
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEe--eCC---HHHHHHHHHHHHHh-CC
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMA--PSD---EDELVDMVATVASI-DD 551 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~--Psd---~~E~~~~l~~a~~~-~~ 551 (721)
.++--| ..+...+.||+++...... .|.+ .||......+++.+-.+.... |.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 666655 4666789999988733222 3432 367665566777776665443 332 35688899999852 34
Q ss_pred CCEEEEecCC
Q 004968 552 RPVCFRYPRG 561 (721)
Q Consensus 552 ~P~~ir~~r~ 561 (721)
+||+|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999999874
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=87.56 E-value=0.84 Score=51.33 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=77.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++. ...|++++.+|.|+|.. |...+| .|+.+....++..| ..+...++||+++...... .|.+..+|. ....
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 6665 48999999999999998 655555 45778777777766 4567889999988743322 344333332 2334
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+..+. ..+.+++++...+..|+.. ..+|++|-+|...
T Consensus 117 ~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 5677766653 4556666666666666542 3469999998764
No 71
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=87.18 E-value=0.56 Score=53.64 Aligned_cols=114 Identities=8% Similarity=0.004 Sum_probs=78.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCee-EEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKP-FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p-~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|-|+|.. |... ++.|+.+....++.-| ..+...++||+++...... .|. |..||.....
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 67665 9999999999999997 5433 3446888776666655 4667889999988743332 232 2157776666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
. ++.+..+. +...+++++...+..|+.. ..+||+|-+|...
T Consensus 122 ~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 122 S-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp G-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred h-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 6 77766653 4556777777777777653 3479999998764
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.52 E-value=3.7 Score=46.60 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=86.8
Q ss_pred HHHHHHHHHHc-CCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHH
Q 004968 407 FIEALVMEAEK-DKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (721)
Q Consensus 407 ~~~~L~~~~~~-d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ 479 (721)
.++.|.+.+++ .-+-+.. ++|+..+ +.+.+ .++ |++-+ .-|++++-+|-|+|.. |...+| .|+.+...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAII---SPGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEE---CCCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 34444444433 3333332 3344433 34443 344 77765 7999999999999987 644444 45888777
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEE--EeeCCHHH----HHHHHHHHHHh--
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIV--MAPSDEDE----LVDMVATVASI-- 549 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V--~~Psd~~E----~~~~l~~a~~~-- 549 (721)
.++--| ..+...+.||+++...... .|. | .+|......+++.+-.+.. -.|.+..+ +..+++.|+..
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV-G-APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 666655 4667889999988732222 232 2 3555444566776655533 34565433 23345555543
Q ss_pred --CCCCEEEEecCC
Q 004968 550 --DDRPVCFRYPRG 561 (721)
Q Consensus 550 --~~~P~~ir~~r~ 561 (721)
..+||+|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 478999999874
No 73
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=85.21 E-value=5.2 Score=45.04 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+.+.. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. | .++| .|+
T Consensus 5 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~Gyar~tg-~~v~~~ts 75 (552)
T 1ovm_A 5 YCVADYLLDRLTDC---GADHLFG---VPGDYNLQFLDHVID-SPDICWVG-CANELNASYAADGYARCKG-FAALLTTF 75 (552)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred cCHHHHHHHHHHHc---CCCEEEE---CCChhHHHHHHHHhc-CCCceEEe-eCcHHHHHHHHHHHHHhhC-CcEEEEcc
Confidence 34556666665543 3333333 3344332 33433 344 5554 59999999999999987 6 5544 358
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH------HHHHHHccCCCcEEEeeCC--HHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSD--EDELVDMVA 544 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~------~dia~~~~iPnl~V~~Psd--~~E~~~~l~ 544 (721)
.+....++--| ..+...++|++++...... .+.+...||.. +...+++.+-......+.+ +..+...++
T Consensus 76 GpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~ 154 (552)
T 1ovm_A 76 GVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLT 154 (552)
T ss_dssp THHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHH
T ss_pred CCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHH
Confidence 77776666665 4667889999988743222 12221222110 2346777776665555430 233444444
Q ss_pred HHHHhCCCCEEEEecCCC
Q 004968 545 TVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~ 562 (721)
.|... .+|++|-+|...
T Consensus 155 ~a~~~-~GPV~l~iP~d~ 171 (552)
T 1ovm_A 155 TMLRE-RRPGYLMLPADV 171 (552)
T ss_dssp HHHHH-TCCEEEEEEHHH
T ss_pred HHHhC-CCCEEEEeehhh
Confidence 44432 489999888753
No 74
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=83.80 E-value=2.8 Score=47.87 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=76.1
Q ss_pred HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC
Q 004968 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD 509 (721)
Q Consensus 435 ~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d 509 (721)
+.+.+ .++ |++-+ .-|++++-+|-|+|.. |...+| .|+.+....++.-| ..+...++||+++...... .|.+
T Consensus 62 dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~ 138 (604)
T 2x7j_A 62 VLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG 138 (604)
T ss_dssp HHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC
T ss_pred HHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC
Confidence 34433 343 77775 9999999999999997 543333 45888776666655 4656779999988733322 3332
Q ss_pred CCCcCcHHHHHHHccCCCcEEE--eeCCH----HHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004968 510 GPTQCGAFDITFMSCLPNMIVM--APSDE----DELVDMVATVAS----IDDRPVCFRYPRGA 562 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~--~Psd~----~E~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (721)
.+|......+++.+-.+... .|.+. .++...+..|+. -..+||+|-+|...
T Consensus 139 --~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 --APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp --CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred --CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 35555555567766555433 33430 014555555544 24689999998764
No 75
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=83.76 E-value=4.8 Score=45.48 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH---
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA--- 516 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~--- 516 (721)
|++. ...|++++.+|.|+|.. | .++| .|+.+....++.-| ..+...++||+++...... .+.+-..||..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 6665 49999999999999986 7 5544 45888776666665 4556779999988743322 12222222211
Q ss_pred ---HHHHHHccCCCcEEEeeCCHH----HHHHHHHHHHHhCCCCEEEEecCCC
Q 004968 517 ---FDITFMSCLPNMIVMAPSDED----ELVDMVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ---~dia~~~~iPnl~V~~Psd~~----E~~~~l~~a~~~~~~P~~ir~~r~~ 562 (721)
+...+++.+-.+.. ...+++ .+...++.|... .+|++|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTA-MITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEE-ECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 23567887766543 334443 445555555543 499999998875
No 76
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=83.53 E-value=7.5 Score=43.90 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeE-EEecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~-~~tys 475 (721)
.+..+++.+.|.+. .-+-++.. +|+.-+ +.+.+ .+=|++.+ ..|++++-+|-|+|.. |...+ +.|+.
T Consensus 10 ~~~a~~l~~~L~~~---GV~~vfg~---PG~~~~~l~~al~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsG 81 (568)
T 2c31_A 10 TDGFHVLIDALKMN---DIDTMYGV---VGIPITNLARMWQD-DGQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSA 81 (568)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEEC---CCTTTHHHHHHHHH-TTCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSH
T ss_pred ccHHHHHHHHHHHc---CCCEEEEe---CCCccHHHHHHHHh-CCCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45566666666543 33333332 233322 33433 23467765 9999999999999998 54333 34688
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCC-CCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS-DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~-dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
+....++.-| ..+...++||+++...... .|. .| .+|......+++.+-.+. +...+++++...+..|+..
T Consensus 82 pG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~ 158 (568)
T 2c31_A 82 PGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMDQMNVARPHCKAS-FRINSIKDIPIGIARAVRTAVS 158 (568)
T ss_dssp HHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCCHHHHSGGGSSEE-EECCSGGGHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccCHHHHHHhhhhee-eecCCHHHHHHHHHHHHHHhcC
Confidence 8887777766 4667789999988743322 231 12 355555567888776664 4445666777777666652
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 159 ~~~GPV~l~iP~dv 172 (568)
T 2c31_A 159 GRPGGVYVDLPAKL 172 (568)
T ss_dssp SSCCEEEEEEETHH
T ss_pred CCCceEEEeCCHHH
Confidence 4589999998763
No 77
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=78.61 E-value=4.1 Score=46.05 Aligned_cols=150 Identities=13% Similarity=0.023 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeE-EEecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~-~~tys 475 (721)
.+..+++.+.|.+. .=+-++.. +|+.-+ +.+.+ ..=|++.+ ..|++++-+|-|+|.. |...+ +.|+.
T Consensus 8 ~~~a~~l~~~L~~~---GV~~vfg~---PG~~~~~l~~al~~-~~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsG 79 (564)
T 2q28_A 8 TDGMHIIVEALKQN---NIDTIYGV---VGIPVTDMARHAQA-EGIRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSA 79 (564)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEEC---CCTTTHHHHHHHHH-TTCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSH
T ss_pred CcHHHHHHHHHHHc---CCCEEEEC---CCcchHHHHHHHHh-CCCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 34566666666543 23333332 233322 33433 22467765 9999999999999998 54333 34688
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCC-CCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS-DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~-dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
+....++.-| ..+...++||+++...... .|. .| .+|......+++.+-.+.. ...+++++...+..|+..
T Consensus 80 pG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~ 156 (564)
T 2q28_A 80 PGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQG-DYEELDQMNAAKPYAKAAF-RVNQPQDLGIALARAIRVSVS 156 (564)
T ss_dssp HHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHS
T ss_pred chHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCC-ccccccHHHHHHHhhheee-ecCCHHHHHHHHHHHHHHHhc
Confidence 8887777666 4667789999988743322 221 12 3555555678888776643 345566666666666642
Q ss_pred -CCCCEEEEecCC
Q 004968 550 -DDRPVCFRYPRG 561 (721)
Q Consensus 550 -~~~P~~ir~~r~ 561 (721)
..+||+|-+|..
T Consensus 157 ~~~GPV~l~iP~d 169 (564)
T 2q28_A 157 GRPGGVYLDLPAN 169 (564)
T ss_dssp SSCCEEEEEEEHH
T ss_pred CCCceEEEEcCHH
Confidence 458999988876
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=77.84 E-value=3.2 Score=44.53 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHHHHHHhC----C-CeeEEEec--HhhHHH-HHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC-----cHHHHHH
Q 004968 455 AVTFSAGLACG----G-LKPFCIIP--SAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----GAFDITF 521 (721)
Q Consensus 455 ~v~~AaGlA~~----G-~~p~~~ty--s~Fl~r-a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-----~~~dia~ 521 (721)
.+..|.|+|++ | -+++++++ ..|.+- .++. ++.++..++||++++..-++ |..++++. ...+++-
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHH
Confidence 34456666654 2 24445554 455432 2333 36788899999999966654 32233221 1222222
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~ 558 (721)
.-.+|++.| .=.|+.++...++.|++. .++|++|-.
T Consensus 225 a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 225 AAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 234565543 444899999999999862 478998854
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=76.45 E-value=3.8 Score=44.49 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHHHHHHHhC----C-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--cHHHHHHHccCC
Q 004968 456 VTFSAGLACG----G-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMSCLP 526 (721)
Q Consensus 456 v~~AaGlA~~----G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~dia~~~~iP 526 (721)
+.+|.|+|++ | -+.+++++ ..|.+-.+-+-++.++..++|+++++..-++ +..+++.. ...|++-...--
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHHc
Confidence 3456666654 2 23444443 4554322223346778889999999976664 33333322 112322222112
Q ss_pred CcEEE--eeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 527 NMIVM--APSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 527 nl~V~--~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
|+.++ .=.|+.++...++.|++ ..++|++|..
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44443 33478999999988876 2578998854
No 80
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=75.65 E-value=5.4 Score=46.28 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCc-CcHHHHH-HHccCCCcEEE-ee--CCHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDIT-FMSCLPNMIVM-AP--SDEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH-~~~~dia-~~~~iPnl~V~-~P--sd~~E 538 (721)
+.++++. ..|.. ..++.+ +.++..++| ++++++..++ +.++++. +...|+. .+.. -|+.++ .- .|..+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHHH-HHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHH
Confidence 3455554 44432 345554 677888988 7777766665 3344443 1122332 4444 378776 32 37999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004968 539 LVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~ 558 (721)
+...+..|.+..++|++|..
T Consensus 224 l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 99999998764588998865
No 81
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=73.88 E-value=7.2 Score=33.76 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=47.4
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 587 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 587 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
..+|+|++.++ ....|.+|.+.|++.|++.+.+|+..- |--.+.+.+.. ..+-+.|++.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 45789998884 789999999999999999999998641 11122233322 22335677776667998643
No 82
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=72.72 E-value=9 Score=44.53 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=55.7
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee---CCHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P---sd~~E 538 (721)
+.++++. ..++. .+++.+ +.++..++| ++++++..++ +.+|+++.. ..|+ ..+... ||.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEAS-SLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHHH-HHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 3455554 44432 345544 677888987 6666666565 344554331 1222 234443 8899988 78999
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004968 539 LVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+...+..|.+..++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999886535899998653
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=72.18 E-value=8.8 Score=44.51 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=55.4
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEE-ee---CCHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVM-AP---SDED 537 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~-~P---sd~~ 537 (721)
+.++++. ..+.. ..++.+ +.++..++| ++++++..++ +.+|++... ..|+ ..++. -||.++ .- .|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEAL-SLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHHH-HHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3455554 44432 335554 567778987 7777776665 334444322 2233 24444 488888 44 6889
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004968 538 ELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
++...+..|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999887546899988653
No 84
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=72.08 E-value=10 Score=39.83 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=26.1
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
|+.++.| .|..+....++.+.+ .++|++|...+.
T Consensus 143 ~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~ 176 (338)
T 1qs0_B 143 GLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKR 176 (338)
T ss_dssp TCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchH
Confidence 7777777 788888888888877 378999876543
No 85
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=71.99 E-value=6.8 Score=35.64 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=46.1
Q ss_pred CcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHH
Q 004968 588 KDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 588 ~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs 655 (721)
.+|+|.++| .....|.+|.+.|++.|++.+.+|+.. .|--.+.+.+.. ..+=++|++.....||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 368888888 677899999999999999999999875 121122333322 1233567777666799853
No 86
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=71.37 E-value=7.1 Score=45.32 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=54.0
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcC-cHHHH-HHHccCCCcEEEee-C---CHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAP-S---DED 537 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~di-a~~~~iPnl~V~~P-s---d~~ 537 (721)
+.++++. ..|.. ..++.+ +.++..++| ++++++..++ +.++++.. ...|+ ..+.. -|+.++.+ - |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEAS-SLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEA-YGWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-HTCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHHH-HHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHh-cCCeEEEEecCCCCHH
Confidence 3455554 34431 345544 677888998 7777766665 33344431 12232 23444 37887734 3 788
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004968 538 ELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
++...+..|.+..++|++|...
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEE
Confidence 9999999987645889988653
No 87
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=70.57 E-value=9.2 Score=44.25 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=51.5
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee---CCHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P---sd~~E 538 (721)
+.++++. ..|+. ..++.+ +.++..++| ++++++..++ +.+|++... ..|+ ..++.. ||.++-+ .|..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEAC-SLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHHH-HHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4455555 44432 345544 677788998 6666665554 333443321 1222 344544 8887733 37899
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004968 539 LVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+...++.|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999886535899998653
No 88
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=69.68 E-value=13 Score=42.59 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH-HHHhhhcCCCEEEEEECCCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA-MSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea-ln~A~~~~~plivIv~dN~~ 254 (721)
..+++|.|+|++ | -+++++.+++... .++|- ++.++..++|+++++..-+.
T Consensus 372 ~~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~ 423 (621)
T 2o1s_A 372 HAVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGI 423 (621)
T ss_dssp HHHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBC
T ss_pred HHHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 355677777764 4 5788888888653 66765 67788899999999966554
No 89
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=68.85 E-value=9.6 Score=33.20 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=49.7
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
...|+|.+-| +....|.+|.+.|++.|++.+.+|+.. .|--.+.+.+.. ..+-+.|++.....||+... . .+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l-~-~l 91 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDII-K-EL 91 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH-H-HH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHHH-H-HH
Confidence 3568888876 566899999999999999999999875 111112233322 23345677877668998643 2 34
Q ss_pred HhcC
Q 004968 662 ALDG 665 (721)
Q Consensus 662 ~~~~ 665 (721)
.++|
T Consensus 92 ~~~G 95 (111)
T 3zyw_A 92 EASE 95 (111)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 4444
No 90
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=68.71 E-value=6.2 Score=42.87 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHHHHhC----C-CeeEEEec--HhhHHH-HHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC---cHHH---HHHH
Q 004968 457 TFSAGLACG----G-LKPFCIIP--SAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC---GAFD---ITFM 522 (721)
Q Consensus 457 ~~AaGlA~~----G-~~p~~~ty--s~Fl~r-a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~---~~~d---ia~~ 522 (721)
.+|.|+|++ | -+.+++++ ..|.+- .++. ++.++..++||++++...++ |..++++. ...| .+-.
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA-LTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH-HHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHHH
Confidence 455565554 2 24444544 444332 2333 46777889999999876654 22222221 1122 2222
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004968 523 SCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (721)
Q Consensus 523 ~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~ 558 (721)
-.+|++.| .=.|+.++...++.|++. .++|++|-.
T Consensus 266 ~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 266 CGIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TTCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred cCCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 24454433 334788999999888753 578998854
No 91
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=68.56 E-value=9.6 Score=40.67 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=58.7
Q ss_pred eccccHHHHHHHHHHHHh----CC-CeeEEEec--HhhHHH-HHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc-----
Q 004968 447 DVGMAEQHAVTFSAGLAC----GG-LKPFCIIP--SAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ----- 513 (721)
Q Consensus 447 d~GIaE~~~v~~AaGlA~----~G-~~p~~~ty--s~Fl~r-a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH----- 513 (721)
..|.-+ +.+++|.|+|+ .+ -++++++. ..|.+- .++.+ +.++..++|+++++..-+ .|..+++.
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~-~gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI-NFAAVQGAPAVFIAENNF-YAISVDYRHQTHS 218 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHTTCSEEEEEEECS-EETTEEHHHHCSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHH-HHHHHhCcCEEEEEecCC-eeeccChhhccCC
Confidence 444444 23344445444 33 24455554 455332 33333 577789999999987666 34434321
Q ss_pred CcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 514 CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 514 ~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
....+++-.-.+|.+. +.-.|+.++...+..|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1122222122355554 355788888877777765 2478998854
No 92
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=67.94 E-value=11 Score=43.62 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=53.8
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEeeC---CHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS---DEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~Ps---d~~E 538 (721)
+.++++. ..|.. ..++.+ +.++..++| ++++++..++ +.++++... ..|+ ..+.. -|+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAA-SLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHH-HHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 4455554 44432 345544 677888988 7777766665 223333211 2233 34444 388887343 7999
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004968 539 LVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+...+..|.+ .++|++|...
T Consensus 228 l~~al~~a~~-~~~P~lI~~~ 247 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVR 247 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEEE
Confidence 9999999876 7899988653
No 93
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=66.70 E-value=7.2 Score=33.61 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-cCCeEEEEcCCCCCChHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~~~~vvvvEe~~~gG~gs 655 (721)
..+|+|.+.| +....|..|.+.|++.|++.+.+|+.. .|--.+.+.+... .+=++|+++....||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHHH
Confidence 3468999988 677889999999999999999999875 1211122333222 222456666656799853
No 94
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=65.77 E-value=14 Score=31.08 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=47.8
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-----cCCeEEEEcCCC-CCChH-HHHHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-----NHTFLITVEEGS-IGGFG-SHVSHF 660 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-----~~~~vvvvEe~~-~gG~g-s~v~~~ 660 (721)
+.|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...++.+ .+=++|++.++. ..|+. .++.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35677664 566789999999999999999999874 4544433322 223667787665 45553 456666
Q ss_pred HHhc
Q 004968 661 IALD 664 (721)
Q Consensus 661 l~~~ 664 (721)
|.+.
T Consensus 79 L~el 82 (92)
T 2lqo_A 79 LVKI 82 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 95
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=64.44 E-value=18 Score=41.47 Aligned_cols=87 Identities=9% Similarity=0.166 Sum_probs=53.2
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEeeC---CHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS---DEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~Ps---d~~E 538 (721)
+.++++. ..|.. .+++.+ +.++..++| ++++++..++ +.+|++... ..|+ ..++.. |+.++ +. |..+
T Consensus 144 ~~v~~v~GDG~~~eG~~~Eal-~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~-~vdGhd~~~ 219 (632)
T 3l84_A 144 HKIYCLCGDGDLQEGISYEAC-SLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNENVKMRFEAQ-GFEVL-SINGHDYEE 219 (632)
T ss_dssp CCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEE-EEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhhcChhHHHHHHHc-CCeEE-EEeeCCHHH
Confidence 4455554 44432 445554 677888987 6677666665 233333221 1222 345554 88877 44 7899
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004968 539 LVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+...++.|.+ .++|++|...
T Consensus 220 l~~al~~A~~-~~~P~lI~v~ 239 (632)
T 3l84_A 220 INKALEQAKK-STKPCLIIAK 239 (632)
T ss_dssp HHHHHHHHHT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEe
Confidence 9999999865 6899998653
No 96
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=62.01 E-value=15 Score=42.26 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.6
Q ss_pred CcEEE---eeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 527 NMIVM---APSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 527 nl~V~---~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
|+..+ ...|..++...++.|.+ .++|++|...
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI~v~ 286 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVD-LDGPTILHIV 286 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 45444 44589999999999965 5889988553
No 97
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=61.38 E-value=16 Score=42.50 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=55.2
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee---CCHHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDE 538 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P---sd~~E 538 (721)
+.++++. ..|+. ..++.+ +.++..++| ++++++..++ +.+|++... ..|+ ..++.. |+.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEAC-SLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHHH-HHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 4555554 44442 445554 677889998 7777776665 334444321 1222 344444 7877765 58999
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004968 539 LVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+...++.|.+ .++|++|...
T Consensus 265 l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEc
Confidence 9999999865 6899998653
No 98
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=61.36 E-value=18 Score=29.45 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCcccc-ccHHH---HHHHh-cc-----CCeEEEEcCC-CCCChHHH
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKP-LDIKL---VRELC-QN-----HTFLITVEEG-SIGGFGSH 656 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~P-lD~e~---i~~l~-~~-----~~~vvvvEe~-~~gG~gs~ 656 (721)
....|.+|.+.|++.|++.+.+|+..... -|.+. +.+.. .. +=..|+++++ ..||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 56789999999999999999999975321 23333 33332 22 2356777444 47998643
No 99
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=61.32 E-value=5.7 Score=36.19 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred EEEEEechhhH-HHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCC
Q 004968 590 VALLGYGAMVQ-NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLD 668 (721)
Q Consensus 590 v~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~ 668 (721)
+.+-+-|+..+ .--.|.+.|++.||++.- ..-++++.+.+ ...+.||+++++. ..+... + .
T Consensus 32 ~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~---~~sr~l~~~~~----~~~D~Ii~m~~~~---------~~~~p~-~-~ 93 (139)
T 1jl3_A 32 WKVYSAGIEAHGLNPNAVKAMKEVGIDISN---QTSDIIDSDIL----NNADLVVTLCGDA---------ADKCPM-T-P 93 (139)
T ss_dssp EEEEEEESSCCCCCHHHHHHHHHTTCCCTT---CCCCBCCHHHH----TTCSEEEECSHHH---------HHHCCC-C-C
T ss_pred EEEEcCcCCCCCCCHHHHHHHHHcCCCccc---CccCcCCHHHh----hcCCEEEEeCchH---------HhhCCC-C-C
Confidence 44444444331 112355667888997632 33455666543 4568999997642 111111 1 1
Q ss_pred CCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcc
Q 004968 669 SGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 713 (721)
Q Consensus 669 ~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~ 713 (721)
..+......+||.|...|..++.++.|.-..+.|.+++..++.+.
T Consensus 94 ~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~ 138 (139)
T 1jl3_A 94 PHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETG 138 (139)
T ss_dssp TTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 123344568888876557777777777666788888888887654
No 100
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=60.88 E-value=7.4 Score=41.63 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHHHHHHHHhC----C-CeeEEEec--HhhHH-HHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCC--cCcHHHHH-HHc
Q 004968 455 AVTFSAGLACG----G-LKPFCIIP--SAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT--QCGAFDIT-FMS 523 (721)
Q Consensus 455 ~v~~AaGlA~~----G-~~p~~~ty--s~Fl~-ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T--H~~~~dia-~~~ 523 (721)
.+.+|.|+|++ | -+++++++ ..|.+ ..++. ++.++..++||++++...++ |...++ .....|+. -.-
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~ 222 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGD 222 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhC
Confidence 34556666654 2 34455554 33433 23443 37788999999999866554 211111 11111111 111
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
.+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3565543 44489999999988875 2578998854
No 101
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=59.65 E-value=27 Score=40.63 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=54.0
Q ss_pred eEEEecH--hhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEee---CCHHHH
Q 004968 469 PFCIIPS--AFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDEL 539 (721)
Q Consensus 469 p~~~tys--~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~P---sd~~E~ 539 (721)
.++++.. .+.. ..++.+ +.++..++| ++++++.-++ +-+|++... .+|+ ..+... ||.++.. .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl-~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEAS-SLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 4445443 3332 335544 678889997 8888876665 223433211 1222 234443 7877765 588999
Q ss_pred HHHHHHHHHhCCCCEEEEec
Q 004968 540 VDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~ 559 (721)
...+..|.+..++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999986546899998654
No 102
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=58.27 E-value=21 Score=41.34 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=53.7
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHhhcCCc-ceEEEEcCCCCcCCCCCCcCc-HHHH-HHHccCCCcEEEeeC----CHH
Q 004968 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS----DED 537 (721)
Q Consensus 468 ~p~~~ty--s~Fl~-ra~dqi~~~~a~~~l-pVv~v~~~~G~~G~dG~TH~~-~~di-a~~~~iPnl~V~~Ps----d~~ 537 (721)
+.++++. ..|.. ..++.+ +.++..++ |++++++..++ +.+|++... ..|+ ..+... |+.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEAC-SLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHHH-HHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3455554 44432 345554 67778888 57777776655 223333211 2232 345554 88887443 788
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004968 538 ELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
++...+..|.+..++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999986545889988653
No 103
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=55.89 E-value=25 Score=36.92 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=24.8
Q ss_pred CceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 329 G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
|+.++.| .|..+....++.+.+ .++|++|-...
T Consensus 159 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~ 191 (342)
T 2bfd_B 159 GIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPK 191 (342)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEG
T ss_pred CcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecc
Confidence 6677767 778888888888876 37899986553
No 104
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=55.11 E-value=26 Score=30.80 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhCCCC-eEEeecCccccccHHH---HHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 587 GKDVALLGYGA----MVQNCLKARALLSKLGID-VTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 587 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~-v~VId~~~l~PlD~e~---i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
..+|+|++.++ ....|.+|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+=+.|+|.....||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 45799999984 789999999999999995 99999863 3333 33321 23346677887668998643
No 105
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=53.14 E-value=20 Score=31.58 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhCCCC---eEEeecCccccccHHHHHHHh----ccCCeEEEEcCCCCCChHH
Q 004968 587 GKDVALLGYGA----MVQNCLKARALLSKLGID---VTVADARFCKPLDIKLVRELC----QNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 587 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~---v~VId~~~l~PlD~e~i~~l~----~~~~~vvvvEe~~~gG~gs 655 (721)
..+|+|++.|+ ....|..|.+.|++.|+. .+.+|+.. |.+....+. ..+=+.|+|.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45789999884 788999999999999998 88888753 333322222 2333567787766899864
Q ss_pred H
Q 004968 656 H 656 (721)
Q Consensus 656 ~ 656 (721)
.
T Consensus 91 l 91 (121)
T 3gx8_A 91 I 91 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=52.08 E-value=41 Score=35.34 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHHhhh---------cCCCEEEEEECCCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSNAGY---------LDSNMIVILNDSRH 254 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvav-iGDGal~~G~~~Ealn~A~~---------~~~plivIv~dN~~ 254 (721)
..+++|.|+|++ | -++++++ .+|... .+++.+.+.+. .++|+++++.. +.
T Consensus 73 ~~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~ 132 (341)
T 2ozl_B 73 GFAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA 132 (341)
T ss_dssp HHHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC
T ss_pred HHHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC
Confidence 456677787775 3 3556654 888873 78888876543 67999999984 64
No 107
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=49.74 E-value=16 Score=30.31 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=42.3
Q ss_pred cEEEEEechhhHHH------HHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc---cCCeEEEEcCCCCCChHHH
Q 004968 589 DVALLGYGAMVQNC------LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ---NHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 589 dv~Iva~Gs~v~~a------l~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~---~~~~vvvvEe~~~gG~gs~ 656 (721)
+|+|.+. +....| ..|.+.|++.||..+.+|+.. .|-..+.+.+... .+=+.|++++...||+-..
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~-~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l 77 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF 77 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTS-CHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence 4566554 334455 889999999999999999974 2222233443332 1236677887778998643
No 108
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=47.64 E-value=43 Score=35.65 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-hhhc--------CCCEEEEEECCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGYL--------DSNMIVILNDSR 253 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvav-iGDGal~~G~~~Ealn~-A~~~--------~~plivIv~dN~ 253 (721)
..+++|.|+|++ | -++++++ ++|... .+++.+.+ ++.. ++|+++++..-+
T Consensus 109 ~~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 109 GILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 456677787775 3 3566655 888763 67787755 5544 899999887544
No 109
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=46.80 E-value=46 Score=34.57 Aligned_cols=50 Identities=6% Similarity=0.046 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-hhh--------cCCCEEEEEECCCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILNDSRH 254 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvav-iGDGal~~G~~~Ealn~-A~~--------~~~plivIv~dN~~ 254 (721)
..+++|.|+|++ | -++++++ .+++.. ..+|.+.+ ++. .+.|+++++. .+.
T Consensus 61 ~~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~ 120 (324)
T 1w85_B 61 GIGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG 120 (324)
T ss_dssp HHHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS
T ss_pred HHHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC
Confidence 456677777775 3 3555554 888762 78888864 444 6799998876 443
No 110
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=46.52 E-value=59 Score=37.09 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
.+++|.|+|++ |..+++++.++++.. ..++.+.+++..++|+++++..-+.
T Consensus 367 ~v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~ 417 (616)
T 3mos_A 367 MVSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGV 417 (616)
T ss_dssp HHHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSG
T ss_pred HHHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCc
Confidence 45566777665 444567789999874 7899999998889999988765553
No 111
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=46.34 E-value=56 Score=25.44 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=40.8
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
++++.+ -+....|..+...|++.|++.+.+|+..- |-..+.+.+.. ...=++++++....+|+. .+.+++.
T Consensus 2 ~i~~y~-~~~C~~C~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 2 NVEIYT-KETCPYCHRAKALLSSKGVSFQELPIDGN-AAKREEMIKRSGRTTVPQIFIDAQHIGGYD-DLYALDA 73 (82)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHHTCCCEEEECTTC-SHHHHHHHHHHSSCCSCEEEETTEEEESHH-HHHHHHH
T ss_pred cEEEEE-CCCChhHHHHHHHHHHCCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEeCHH-HHHHHHH
Confidence 345543 34567889999999989999999998641 11112233222 122245555544468875 4444443
No 112
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=44.56 E-value=32 Score=29.02 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=43.3
Q ss_pred CcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-cCCeEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~~~~vvvvEe~~~gG~gs~ 656 (721)
..|+|.+.| +....|..|...|++.|++...+|+..- |--.+.+.+... .+=+.|++.....||+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 357777776 4567899999999999999999998652 211122333222 2224556665457888643
No 113
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=41.68 E-value=79 Score=30.96 Aligned_cols=59 Identities=15% Similarity=-0.010 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHH
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 660 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~ 660 (721)
..+..+++.|++.|.+++++|+.. .+|.+...+.++..+.||+.=--+-+++.+.+-.+
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~ 105 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKY 105 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHH
Confidence 344456777888899999999975 67877777777788887776544445555544443
No 114
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.59 E-value=26 Score=30.28 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=41.0
Q ss_pred cEEEEEechhhHHHH------HHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc------------CCeEEEEcCCCC
Q 004968 589 DVALLGYGAMVQNCL------KARALLSKLGIDVTVADARFCKPLDIKLVRELCQN------------HTFLITVEEGSI 650 (721)
Q Consensus 589 dv~Iva~Gs~v~~al------~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~------------~~~vvvvEe~~~ 650 (721)
.|+|.+. +....|. +|.+.|++.||..+.+|+.. |.+...++.+. +=+.|++++...
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i 83 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC 83 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence 4666654 3445566 79999999999999999975 33333333222 125677887668
Q ss_pred CChHH
Q 004968 651 GGFGS 655 (721)
Q Consensus 651 gG~gs 655 (721)
||+-.
T Consensus 84 GG~d~ 88 (111)
T 2ct6_A 84 GDYDS 88 (111)
T ss_dssp EEHHH
T ss_pred eCHHH
Confidence 88864
No 115
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=39.38 E-value=60 Score=27.50 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH---HHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~---i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
.+|+|.+. +....|..|...|++.|+..+.+|+....|-+.+. +.+.. ..+=+.|++.....||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHH
Confidence 35666654 56789999999999999999999987654433332 22221 12234566765557888654
No 116
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=39.07 E-value=1e+02 Score=31.84 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEE-EcCCCcccchHHHHHHH-hhh--------cCCCEEEEEE
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILN 250 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvav-iGDGal~~G~~~Ealn~-A~~--------~~~plivIv~ 250 (721)
..+++|.|+|++ | -++++++ .+++. + ..++.+.+ ++. .+.|+++++.
T Consensus 62 ~~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 62 AIVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 356678888776 3 3556654 88885 2 67888854 443 5799999886
No 117
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=38.70 E-value=50 Score=31.31 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=39.9
Q ss_pred hhHHHHHHHHH-HHhCCCCeEEeecCcccc----------ccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 598 MVQNCLKARAL-LSKLGIDVTVADARFCKP----------LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 598 ~v~~al~Aa~~-L~~~Gi~v~VId~~~l~P----------lD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
.-..+..+++. |++.|.+++++|+.-+.. =+.+.+.+.+...+.||++=--+.+++...+..++.
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 44556666777 888899999999876421 123334444556666665544344666666666654
No 118
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=37.81 E-value=48 Score=27.83 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=43.2
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh--ccCCeEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC--QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~--~~~~~vvvvEe~~~gG~gs~ 656 (721)
.+|+|.+ -+....|..|.+.|++.|+..+.+|+..-.+. .+.+.+.. ..+=+.|++.....||+...
T Consensus 16 ~~v~vy~-~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYT-WSTCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CCEEEEE-CTTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CCEEEEE-cCCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 4677665 44568899999999999999999998752111 12233332 22235566766567988653
No 119
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.80 E-value=25 Score=33.13 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.4
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
-||+||+-|..- +.||-.|.+.|++|.|++-.
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEECC
Confidence 379999988654 34677788899999999953
No 120
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.71 E-value=64 Score=32.16 Aligned_cols=64 Identities=23% Similarity=0.150 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCcccccc--------HHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHh
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPLD--------IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~PlD--------~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 663 (721)
..+..+++.+++.|++++++|+.-+..++ .+.+.+.+...+.||++=--+.+++...+..++..
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44555677788789999999998753221 34445555566666665444456676666666543
No 121
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=34.22 E-value=35 Score=30.44 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh---------ccCCeEEEEcCCCCCChHHH
Q 004968 602 CLKARALLSKLGIDVTVADARFCKPLDIKLVRELC---------QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 602 al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~---------~~~~~vvvvEe~~~gG~gs~ 656 (721)
|..|...|+.+||..+.+|+.. .|--.+.+.+.. ..+-+.|++++-..||+-..
T Consensus 19 c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 5788899999999999999974 222223333332 12346677888778998753
No 122
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=32.32 E-value=74 Score=31.16 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHhC-CCCeEEeecCcccc---------------------ccHHHHHHHhccCCeEEEEcCCCCCChHH
Q 004968 598 MVQNCLKARALLSKL-GIDVTVADARFCKP---------------------LDIKLVRELCQNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~-Gi~v~VId~~~l~P---------------------lD~e~i~~l~~~~~~vvvvEe~~~gG~gs 655 (721)
....+..+++.|++. |.+++++|+.-+.+ =|.+.+.+.+...+.||+.=.-+.+++.+
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~ 96 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSV 96 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCH
Confidence 345556667778777 99999999875421 12334444455667776654444577777
Q ss_pred HHHHHHHh
Q 004968 656 HVSHFIAL 663 (721)
Q Consensus 656 ~v~~~l~~ 663 (721)
.+..++..
T Consensus 97 ~lK~~iDr 104 (242)
T 1sqs_A 97 DTKNFIER 104 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 123
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=32.14 E-value=65 Score=30.14 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHhCCCCeEEeecCccccccHH-------------HHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 596 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK-------------LVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e-------------~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
|..-..+..+++.|++.|++++++|+... +.+.- ...+.+.+++.||+.=--+.+++...+..++.
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 44445566667777778999999999874 21110 11233445666666544345677666666665
Q ss_pred h
Q 004968 663 L 663 (721)
Q Consensus 663 ~ 663 (721)
.
T Consensus 96 ~ 96 (200)
T 2a5l_A 96 G 96 (200)
T ss_dssp T
T ss_pred H
Confidence 4
No 124
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=31.49 E-value=19 Score=32.14 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=30.4
Q ss_pred EEeCCcEEEEEechhhH--HHHHHHHHHHhCCCCeEEeecC
Q 004968 584 LVEGKDVALLGYGAMVQ--NCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 584 l~eG~dv~Iva~Gs~v~--~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
+.++.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 34567999999998664 3456677899999999998754
No 125
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=30.95 E-value=1.2e+02 Score=29.27 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred CCcEEEEEechhh----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEE
Q 004968 587 GKDVALLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 587 G~dv~Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvv 644 (721)
|++|++|.|++.. .....+.+.|++.|+++.+++++. -+.+.+.+.+++.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 6789999998763 345566677788899999998766 234444444555566553
No 126
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=30.11 E-value=86 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 596 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 596 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
-+....|.+|.+.|++.|+..+++|+.. .|.+.+.+.++.+
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~ 47 (120)
T 3l78_A 7 SPSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILS 47 (120)
T ss_dssp CSSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHh
Confidence 3456889999999999999999999875 6888888877765
No 127
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=30.05 E-value=1e+02 Score=27.22 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=25.5
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
..++|+++|.+... .++.|.+.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46999999987764 456777889999999864
No 128
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=30.01 E-value=72 Score=27.98 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
+....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++..
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 456899999999999999999999975 788888888876543
No 129
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=29.76 E-value=76 Score=38.09 Aligned_cols=109 Identities=16% Similarity=0.035 Sum_probs=60.3
Q ss_pred eeccccHHHHHHHHHHHHhC----C-----Ce-eEEEec--Hhh-HH-HHHHHHHHHhhcCCcc---eEEEEcCCCCcCC
Q 004968 446 FDVGMAEQHAVTFSAGLACG----G-----LK-PFCIIP--SAF-LQ-RAYDQVVNDVDQQRLP---VRFVITSAGLVGS 508 (721)
Q Consensus 446 ~d~GIaE~~~v~~AaGlA~~----G-----~~-p~~~ty--s~F-l~-ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~ 508 (721)
++.+..++. +.+|.|+|.+ | .. .+++++ +.| .+ ..++.+ |.++..++| +++++..-++ |.
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Eal-n~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETL-NMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHH-HHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHH-HHhhccCCCCCceEEEEEeCCc-cc
Confidence 455555554 5677777765 2 11 233333 445 22 445544 788899999 7777754443 32
Q ss_pred CC-CCc-----CcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 509 DG-PTQ-----CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 509 dG-~TH-----~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
.+ ++. ....+++-.-.+|.+.| --.|+.++...++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 33 332 12233333334565554 66788889999888874 2468988743
No 130
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=29.42 E-value=71 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=28.9
Q ss_pred EEechhh----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 593 LGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 593 va~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
|-|+|+. ..|...++.|++.|++++++|+....| + + +.+++.||+.=
T Consensus 3 I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~---~-l~~~d~iiig~ 53 (138)
T 5nul_A 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNI---D---E-LLNEDILILGC 53 (138)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H---H-HTTCSEEEEEE
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H---H-HhhCCEEEEEc
Confidence 4455544 455555666677899999999876542 2 2 23556666553
No 131
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=28.74 E-value=1.4e+02 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
..++|+++|.... ..++.|.+.|.++.++|..
T Consensus 4 ~~vlI~G~G~vG~---~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAI---NTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHH---HHHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 4688999887765 4456777789999999874
No 132
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=28.42 E-value=1.7e+02 Score=24.84 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH----HHHHh-ccCCeEEEEcCCCCCChHHH
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL----VRELC-QNHTFLITVEEGSIGGFGSH 656 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~----i~~l~-~~~~~vvvvEe~~~gG~gs~ 656 (721)
..+|+|.+. +....|..|...|++.|+..+++|+.... |.+. +.+.. ..+=+.|.+.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 346777654 66789999999999999999999986531 2222 32222 22334566765557998643
No 133
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=28.37 E-value=1.2e+02 Score=28.75 Aligned_cols=61 Identities=3% Similarity=0.036 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccH----------HHHHHHhccCCeEEEEcCCCCCChHHHHH
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDI----------KLVRELCQNHTFLITVEEGSIGGFGSHVS 658 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~----------e~i~~l~~~~~~vvvvEe~~~gG~gs~v~ 658 (721)
......+++..+.+.|.+++++|+.-+-.|+. +.+++.++..+.+|++=--+.|++...+-
T Consensus 17 ~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LK 87 (190)
T 3u7r_A 17 LNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIK 87 (190)
T ss_dssp HHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHH
Confidence 34444455555656799999999887533332 23455666777666654433344444343
No 134
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=28.33 E-value=93 Score=28.94 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhC------CCCeEEeecCc--cccccH--------------------HHHHHHhccCCeEEEEcCCC
Q 004968 598 MVQNCLKARALLSKL------GIDVTVADARF--CKPLDI--------------------KLVRELCQNHTFLITVEEGS 649 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~------Gi~v~VId~~~--l~PlD~--------------------e~i~~l~~~~~~vvvvEe~~ 649 (721)
.-..+..+++.|++. |.+++++|+.. +.|++. +.+.+.+...+.||++=--+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y 95 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQY 95 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceE
Confidence 344555666777765 78999999875 333221 23344455666666554444
Q ss_pred CCChHHHHHHHHHh
Q 004968 650 IGGFGSHVSHFIAL 663 (721)
Q Consensus 650 ~gG~gs~v~~~l~~ 663 (721)
.+++.+.+..++..
T Consensus 96 ~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 96 NWGYPAALKNAIDR 109 (191)
T ss_dssp TTBCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 56666666666644
No 135
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.16 E-value=1.2e+02 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=25.1
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
...++|+++|.+.. ..++.|.++|.++.++|..
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEECC
Confidence 45799999988544 4567778889999999853
No 136
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=28.15 E-value=98 Score=28.25 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=30.5
Q ss_pred EEEechhh----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 592 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 592 Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
+|-|+|+. ..|...++.|++.|++++++|+... |.+.+.+.+.+++.||+.=
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEc
Confidence 34556555 4455556666778999999998753 3333333334555665543
No 137
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.01 E-value=2.7e+02 Score=25.21 Aligned_cols=53 Identities=23% Similarity=0.173 Sum_probs=30.5
Q ss_pred EEEEechhh----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEE
Q 004968 591 ALLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITV 645 (721)
Q Consensus 591 ~Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvv 645 (721)
++|-|+|+. ..|...++.|++.|++++++|+... .|.+.+.+.+.+++.||+.
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEE
Confidence 344556555 4455556667778999999998753 0333333333344555544
No 138
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=27.54 E-value=24 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=27.5
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
.|++||++|... ..--+..+.|++.||.+++.|-+
T Consensus 69 pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 69 IEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 699999999865 22345667889999999998854
No 139
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=27.49 E-value=24 Score=32.07 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.2
Q ss_pred CcEEEEEechhhH-HHHHHHHHHHhCCCCeEEeecC
Q 004968 588 KDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 588 ~dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 68 pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 68 IDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 6999999997653 2235567789999999998854
No 140
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=27.32 E-value=1.2e+02 Score=28.93 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCeEEeecCcccc---ccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHh
Q 004968 601 NCLKARALLSKLGIDVTVADARFCKP---LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663 (721)
Q Consensus 601 ~al~Aa~~L~~~Gi~v~VId~~~l~P---lD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 663 (721)
.+...++.+++.|.+++++|+....| -|.+...+.++..+.||+.=--+-+++.+.+..++..
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 34445566777899999999988765 4556666666777777766544457777767666654
No 141
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=27.17 E-value=1.9e+02 Score=25.94 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=40.3
Q ss_pred cEEEEEech-hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHH-hccCCeEEEEcC
Q 004968 589 DVALLGYGA-MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL-CQNHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l-~~~~~~vvvvEe 647 (721)
++.|+..+. ....|.+..+.|++.|+.+++.+.++=.+|-. .|++. .++...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~-kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ-ALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHH-HHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHH-HHHHHHHcCCCEEEEEec
Confidence 677777764 45889999999999999999866543234443 34443 456677777754
No 142
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=26.92 E-value=99 Score=29.55 Aligned_cols=60 Identities=23% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 601 NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 601 ~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.++..+.||++=--+.+++.+.+-.++.
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44456667777799999999974 5677777777777787776654445666666655554
No 143
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=26.91 E-value=1.4e+02 Score=32.06 Aligned_cols=70 Identities=14% Similarity=-0.019 Sum_probs=44.6
Q ss_pred EEEechhh----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 592 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 592 Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
+|.|+||. ..|...++.|+++|+++.++++..+..-|...+.+.+.+.+.+++-=.-+.|++-..+..++
T Consensus 269 ~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 269 TVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred eeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 45566665 45566677778899999888888777767666655555666666543333455544444433
No 144
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=26.56 E-value=84 Score=32.05 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCccccc-------c--HHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPL-------D--IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~Pl-------D--~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
..+..+++.+++.|++++++|+.-+... + .+.+.+.+...+.||++=--+.+++...+..++.
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHH
Confidence 4555677788888999999999886421 1 2334455556666665543334555555555543
No 145
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=26.55 E-value=77 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=37.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 639 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~ 639 (721)
++|.+ -+....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++..
T Consensus 7 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 54 (121)
T 3rdw_A 7 VTIYH-NPRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQL 54 (121)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHT
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhc
Confidence 44433 3456899999999999999999999976 788888888776554
No 146
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=25.94 E-value=1.5e+02 Score=28.04 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=38.7
Q ss_pred cEEEEEec-hhhHHHHHHHHHHHhCCCCe--EEeecCccccccHHHH---HHHh-ccCCeEEEEcCCCCCChHHHHHH
Q 004968 589 DVALLGYG-AMVQNCLKARALLSKLGIDV--TVADARFCKPLDIKLV---RELC-QNHTFLITVEEGSIGGFGSHVSH 659 (721)
Q Consensus 589 dv~Iva~G-s~v~~al~Aa~~L~~~Gi~v--~VId~~~l~PlD~e~i---~~l~-~~~~~vvvvEe~~~gG~gs~v~~ 659 (721)
+|.||.-| |-...+.+|++.|++.|+.. +|+++.. .+.+.. ++.. +..+ ||++=.+..+.+.+-|+.
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR---~p~~~~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 82 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHR---TPEAMFSYARGAAARGLE-VIIAGAGGAAHLPGMVAA 82 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---CHHHHHHHHHHHHHHTCC-EEEEEEESSCCHHHHHHH
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCC---CHHHHHHHHHHHHhCCCC-EEEEecCchhhhHHHHHh
Confidence 56666544 34688999999999999864 4555443 333222 2222 2334 444444455667766665
No 147
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.83 E-value=1.2e+02 Score=26.09 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=36.6
Q ss_pred EEEechhhH----HHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHH--HHHHHHh
Q 004968 592 LLGYGAMVQ----NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSH--VSHFIAL 663 (721)
Q Consensus 592 Iva~Gs~v~----~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~--v~~~l~~ 663 (721)
+|-|+|... .|...++.|++.|++++++++.-. |.+. +.+.+.||+.=.-+.+|.... +..++..
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~~----l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT---NVDD----VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHHH----HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHHH----HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 445665554 444455566667999999997654 2222 235566766544333454333 5555543
No 148
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=25.72 E-value=58 Score=29.31 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=36.2
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccc-cHHHHHHHh
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL-DIKLVRELC 636 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~Pl-D~e~i~~l~ 636 (721)
.+++++||-|+.+...+..++.|.+.|.++.++-.|+-.-+ -.+.++++.
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l~ 68 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKAV 68 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTTS
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHHH
Confidence 46899999999999999999988888888888844543322 234455443
No 149
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=25.68 E-value=3.4e+02 Score=32.29 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 535 DEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 535 d~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
|..++...++.|.+..++|++|...
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~~~ 389 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVILAH 389 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 7888888888887655689988653
No 150
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=25.65 E-value=23 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=28.5
Q ss_pred eCCcEEEEEechhhH-HHHHHHHHHHhCCCCeEEeecC
Q 004968 586 EGKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
.+.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 63 ~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 63 LNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp HCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred cCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 357999999998663 3345567788899999998854
No 151
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=25.44 E-value=58 Score=28.13 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=36.3
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
|+|.+ -+....|.+|.+.|+++||..+++|+.. .|++.+.+.++.+.
T Consensus 2 i~iY~-~~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~ 48 (114)
T 1rw1_A 2 YVLYG-IKACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAE 48 (114)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHh
Confidence 44443 3566889999999999999999999864 67788887776644
No 152
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=25.40 E-value=1.1e+02 Score=24.52 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=40.5
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH----HHHHHHh-ccCCeEEEEcCCCCCChH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI----KLVRELC-QNHTFLITVEEGSIGGFG 654 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~----e~i~~l~-~~~~~vvvvEe~~~gG~g 654 (721)
+++|.+ .+....|..|...|++.|++.+.+|+....+-+. +.+.+.. ..+-+++++++...+|+.
T Consensus 13 ~v~ly~-~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~ 82 (92)
T 3ic4_A 13 EVLMYG-LSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN 82 (92)
T ss_dssp SSEEEE-CTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred eEEEEE-CCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence 456554 3456889999999999999999999876554322 2222221 123355656543467764
No 153
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=25.36 E-value=91 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=37.1
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
|+|.+ -+....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++.
T Consensus 6 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~ 52 (120)
T 3gkx_A 6 TLFLQ-YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPL 52 (120)
T ss_dssp CEEEE-CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHH
Confidence 34433 4556899999999999999999999975 68888888777653
No 154
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=24.80 E-value=1e+02 Score=32.98 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
.++.+|+|+|++ | .+.+++.-|.|-. ..+|.|.+++..+.|+++++-+-.
T Consensus 75 ~a~~~a~Gaa~a----G-~r~~~~ts~~G~~---~~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 75 ASIAAAIGASWA----G-AKAMTATSGPGFS---LMQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp HHHHHHHHHHHT----T-CCEEEEEETTHHH---HHTTTCC----CCCCEEEEEEC--
T ss_pred HHHHHHHHHHHh----C-CcEEEEeCchHHH---HHHHHHHHHHhcCCCEEEEEeeCC
Confidence 345556666654 4 3467777787765 356778788877899999887654
No 155
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=24.58 E-value=2.1e+02 Score=24.93 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccc
Q 004968 604 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYI 683 (721)
Q Consensus 604 ~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~ 683 (721)
.|.+.|++.||+ .-...+.+.+.+ ....+.||+++++.... .+ ...+......+||.|.
T Consensus 43 ~a~~~l~e~Gid-s~~~sr~l~~~~-------~~~~D~Ii~m~~~~~~p------------~~-~~~~~~~~~~i~DP~~ 101 (124)
T 1y1l_A 43 TVKRLLAERGLK-AKEKPRTVDEVN-------LDDFDLIVTVCEESSCV------------VL-PTDKPVTRWHIENPAG 101 (124)
T ss_dssp HHHHHHHTTTCC-CCSSCCBGGGSC-------GGGCSCEEEEECSSCCB------------CC-SCSSCEEEEECCCCTT
T ss_pred HHHHHHHHcCcC-CCCccccCChhH-------hcCCCEEEEecCcccCc------------CC-CCCeeecceecCCCCC
Confidence 345567888998 544455554443 23568899998751000 00 1123345668899875
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 684 EHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 684 ~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
. ..+. |--..+.|.+++.+++.
T Consensus 102 ~--~~~~----f~~~~~~i~~~v~~ll~ 123 (124)
T 1y1l_A 102 K--DEGT----YRRVLAEIEERVKKLVG 123 (124)
T ss_dssp T--CTTH----HHHHHHHHHHHHHHHTT
T ss_pred C--CHHH----HHHHHHHHHHHHHHHHh
Confidence 2 2111 11134666666666654
No 156
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=24.03 E-value=81 Score=28.54 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=35.4
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
|+|.+ -+....|.+|.+.|+++|+..+++|+.. .|.+.+.+.+..+
T Consensus 4 itiY~-~p~C~~crkak~~L~~~gi~~~~idi~~-~~~~~~eL~~~~~ 49 (141)
T 1s3c_A 4 ITIYH-NPASGTSRNTLEMIRNSGTEPTIILYLE-NPPSRDELVKLIA 49 (141)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHHTTCCCEEECTTT-SCCCHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCCEEEEECCC-CCccHHHHHHHhc
Confidence 44433 3567899999999999999999999975 6777777766544
No 157
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=23.70 E-value=93 Score=30.52 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=47.0
Q ss_pred EEEEEechhhHHHHHHHHHHHh---CCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCCh---HHHHHHHHH
Q 004968 590 VALLGYGAMVQNCLKARALLSK---LGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGF---GSHVSHFIA 662 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~---~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~---gs~v~~~l~ 662 (721)
-++|-|||+...+.+.|+.|.+ .|++++|+++....+- ++. +.+.+|++=.-+ .|-+ ...+.+.|.
T Consensus 42 kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~------~l~-~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~ 114 (219)
T 3hr4_A 42 RVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLS------CLE-EERLLLVVTSTFGNGDCPGNGEKLKKSLF 114 (219)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGG------GGG-TCSEEEEEEECBTTTBCCGGGHHHHHHHH
T ss_pred cEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHh------Hhc-cCCeEEEEEeccCCCcCCHHHHHHHHHHH
Confidence 4567799999998888887754 5888999887654321 122 445555553222 2222 223344454
Q ss_pred hcC-CCCCCCceEEEecCC
Q 004968 663 LDG-LLDSGVKWRPIVLPD 680 (721)
Q Consensus 663 ~~~-~~~~~~~~~~~g~~d 680 (721)
... .+ ...++-.+|+-|
T Consensus 115 ~~~~~l-~~~~~aVfGlGd 132 (219)
T 3hr4_A 115 MLKELN-NKFRYAVFGLGS 132 (219)
T ss_dssp HCCCCS-SCCEEEEEEEEC
T ss_pred hcchhh-cCCEEEEEeCCC
Confidence 432 11 245666777644
No 158
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=23.65 E-value=1.8e+02 Score=34.63 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=50.0
Q ss_pred HhhH--HHHHHHHHHHhhcCCcc---eEEEEcCCCCcCCCCCCc-----CcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 475 SAFL--QRAYDQVVNDVDQQRLP---VRFVITSAGLVGSDGPTQ-----CGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 475 s~Fl--~ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~dG~TH-----~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
+.|. .-.++.+ +.++..++| +++++..-++ |..+++. ....|++-.-.+|.+.| -=.|+.++...++
T Consensus 287 Ga~~~eG~v~Eal-n~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~D~~av~~a~~ 363 (868)
T 2yic_A 287 AAFAGQGVVAETL-NLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGDDPEACAWVAR 363 (868)
T ss_dssp HHHHHCHHHHHHH-TTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETTCHHHHHHHHH
T ss_pred cccccccHHHHHH-HHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEEE-eCCCHHHHHHHHH
Confidence 5553 2334433 678888998 9998866554 3333322 12334443444665544 4468999999999
Q ss_pred HHHH---hCCCCEEEEe
Q 004968 545 TVAS---IDDRPVCFRY 558 (721)
Q Consensus 545 ~a~~---~~~~P~~ir~ 558 (721)
.|++ ..++|++|-.
T Consensus 364 ~A~~~ar~~~~PvlIe~ 380 (868)
T 2yic_A 364 LAVDFRQAFKKDVVIDM 380 (868)
T ss_dssp HHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 8875 2478998854
No 159
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=23.38 E-value=1.6e+02 Score=23.37 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=38.8
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc-cCCeEEEEcCCCCCChHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~-~~~~vvvvEe~~~gG~gs 655 (721)
.+++.+ -+....|..+...|++.|++.+.+|+..- |-..+.+.+... ..=.+++++....+|+..
T Consensus 7 ~v~ly~-~~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~ 72 (92)
T 2khp_A 7 DVIIYT-RPGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFPQIFIGSVHVGGCDD 72 (92)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCCEEEETTEEEESHHH
T ss_pred cEEEEE-CCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEcCHHH
Confidence 355544 35568899999999999999999998741 211222333221 222455555444677654
No 160
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=23.24 E-value=36 Score=31.57 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.1
Q ss_pred CCcEEEEEechhhH-HHHHHHHHHHhCCCCeEEeecC
Q 004968 587 GKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 587 G~dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
..+++||++|...+ .--+..+.|++.||.+++.|-+
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~ 124 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQ 124 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 46999999998663 3345667889999999998853
No 161
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=22.76 E-value=4e+02 Score=23.51 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=65.3
Q ss_pred cEEEEEech-hhHHHHHHHHHHHhCCCCeEEeecCccccccH--HHHHHHhc----cCCeEEEEcCCCCCChHHHHHHHH
Q 004968 589 DVALLGYGA-MVQNCLKARALLSKLGIDVTVADARFCKPLDI--KLVRELCQ----NHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 589 dv~Iva~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~--e~i~~l~~----~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
.++|++.|. ......++++++-.+ -.+..+|+..=...+. +.+.+.++ ..+.+|.++-++...++..+....
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~ 84 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEEL 84 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhc
Confidence 488999999 889999999988655 5677888754322221 23333333 235778888865555554443321
Q ss_pred HhcCCCCCCCceEEEecCCccccCCCHHHHH--HHcCCCHHHHHHHHHHHhhcc
Q 004968 662 ALDGLLDSGVKWRPIVLPDNYIEHASPTQQL--ALAGLTGHHIAATALSLLGRT 713 (721)
Q Consensus 662 ~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~--~~~gl~~~~I~~~i~~~l~~~ 713 (721)
+.+++.+...+-+. .-|.. ...+-+-++|++.++++.+.+
T Consensus 85 --------~~~v~vI~gvnlpm----llea~~~~~~~~~l~el~~~~~~~~~~~ 126 (130)
T 3gx1_A 85 --------GIRTKTVTMVSTPV----VLEAMRKASLGRGLEDIYQSCEQLFENK 126 (130)
T ss_dssp --------CCCEEEECSCCHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --------CCCEEEEeCCCHHH----HHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 12455554433221 01111 234458888999888776543
No 162
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.60 E-value=1.7e+02 Score=24.56 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=45.4
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC---eEEEEcCCCCCChHHHHHHHHHhcC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT---FLITVEEGSIGGFGSHVSHFIALDG 665 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~---~vvvvEe~~~gG~gs~v~~~l~~~~ 665 (721)
++|+-+.+--....+-.+.+++.|.+++.+.-+.- + .+.|.++++++. .+++|++ --|++....++..-|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqe--l-kdsieelvkkynativvvvvdd---kewaekairfvkslg 75 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQE--L-KDSIEELVKKYNATIVVVVVDD---KEWAEKAIRFVKSLG 75 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHH--H-HHHHHHHTTCCCCEEEEEECSS---HHHHHHHHHHHHHHC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHH--H-HHHHHHHHHHhCCeEEEEEEcc---HHHHHHHHHHHHhcC
Confidence 56777777777777778888999999887654321 1 356778888775 2333444 346666666665544
No 163
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=22.53 E-value=1.2e+02 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.9
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
+|..++||+.|.+. ...++.|.+.|.+++||+..
T Consensus 30 ~gk~VLVVGgG~va---~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIA---TRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHH---HHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHH---HHHHHHHHHCCCEEEEECCC
Confidence 57889999988654 45567787889999999975
No 164
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=22.47 E-value=1.7e+02 Score=25.86 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=36.5
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~ 638 (721)
++|.+ -+....|.+|.+.|++.|+..+++|+.. .|.+.+.+.++.+.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~ 49 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRM 49 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHT
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHH
Confidence 44443 3566899999999999999999999874 67777778776653
No 165
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=21.82 E-value=70 Score=29.98 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCeEEeecCcccccc-----------HHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHh
Q 004968 604 KARALLSKLGIDVTVADARFCKPLD-----------IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663 (721)
Q Consensus 604 ~Aa~~L~~~Gi~v~VId~~~l~PlD-----------~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 663 (721)
.+++.|+ .|.+++++|+..+..++ .+.+.+.+...+.||+.=--+.+++...+..++..
T Consensus 28 ~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 28 EAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 3344444 58899999988743332 23334445566666665443446666665555543
No 166
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=21.49 E-value=2.3e+02 Score=26.56 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCcccccc----------HHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPLD----------IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~PlD----------~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~ 662 (721)
..+..+++.++ .|.+++++|+.-+-.++ .+.+.+.++..+.||++=--+.+++.+.+..++.
T Consensus 20 ~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD 91 (192)
T 3fvw_A 20 QLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLD 91 (192)
T ss_dssp HHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHH
Confidence 34445556665 68999999998652232 2345555667788777655555666655555543
No 167
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.40 E-value=2.4e+02 Score=26.39 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=39.8
Q ss_pred cEEEEEec-hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh----ccCCeEEEEcCCCCCChHHHHHHH
Q 004968 589 DVALLGYG-AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC----QNHTFLITVEEGSIGGFGSHVSHF 660 (721)
Q Consensus 589 dv~Iva~G-s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~----~~~~~vvvvEe~~~gG~gs~v~~~ 660 (721)
+|.||.-| |-...+.+|++.|++.|+..++ .+.+..-.+++. .+.. ++.-.||++=.+..+.+.+-|+..
T Consensus 5 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 79 (163)
T 3ors_A 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEK-QVVSAHRTPKMM-VQFASEARERGINIIIAGAGGAAHLPGMVASL 79 (163)
T ss_dssp CEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHH-HHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEECCcCCHHHH-HHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 56666544 3468899999999999987543 333333334433 2232 222234544445557777766653
No 168
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.26 E-value=84 Score=27.35 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=37.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 640 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~ 640 (721)
|+|.+. +....|.+|.+.|++.||..+++|+.. .|.+.+.+.++.++.+
T Consensus 7 i~iY~~-~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 7 VTIYGI-KNCDTMKKARIWLEDHGIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEC-CCChHHHHHHHHHHHcCCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 555443 455899999999999999999999864 5778888887765544
No 169
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=21.13 E-value=97 Score=28.61 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=52.0
Q ss_pred cEEEEEechhh-----HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHh
Q 004968 589 DVALLGYGAMV-----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663 (721)
Q Consensus 589 dv~Iva~Gs~v-----~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 663 (721)
++.+-+-|+.. ..--.|.+.|++.||++. -..+ +++.+.+ ...+.||++++.. -..+......
T Consensus 37 ~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar---~l~~~~~----~~~DlIi~M~~~~----~~~l~~~~p~ 104 (161)
T 2cwd_A 37 RFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVAR---RLTREDV----LAYDHILVMDREN----LEEVLRRFPE 104 (161)
T ss_dssp TEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCC---BCCHHHH----HHCSEEEESSHHH----HHHHHHHCGG
T ss_pred cEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-cccc---CCCHhHh----ccCCEEEECChHH----HHHHHHHCCC
Confidence 35555555543 112245566777899876 4444 4555444 3567899988632 1122221111
Q ss_pred cCCCCCCCceEEE-------ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 664 DGLLDSGVKWRPI-------VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 664 ~~~~~~~~~~~~~-------g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
. ..++..+ .+||.|. |+.+. |--..+.|.+++..++.+
T Consensus 105 ~-----~~kv~~l~~~~~~~~i~DP~~--~~~~~----f~~~~~~I~~~v~~ll~~ 149 (161)
T 2cwd_A 105 A-----RGKVRLVLEELGGGEVQDPYY--GDLED----FREVYWTLEAALQAFLDR 149 (161)
T ss_dssp G-----TTTEEEGGGGGTCCCCCCCTT--SCHHH----HHHHHHHHHHHHHHHHHH
T ss_pred c-----cCcEEeehhhcCCCCCCCCCC--CCHHH----HHHHHHHHHHHHHHHHHH
Confidence 0 1244433 7888775 33222 222346777777776643
No 170
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=20.20 E-value=3e+02 Score=25.16 Aligned_cols=57 Identities=23% Similarity=0.124 Sum_probs=37.1
Q ss_pred cEEEEEechhh----HHHHHHHHHHHhCC-CCeEEeecCccccccHHHHHHHhccCCeEEEEcC
Q 004968 589 DVALLGYGAMV----QNCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 589 dv~Iva~Gs~v----~~al~Aa~~L~~~G-i~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+++|+++|+.. ..-..+++.|++.. -+++++|.-+.-+--...+.+. +.+.+|+|+.
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA 66 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDA 66 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEe
Confidence 46899999976 34567788887642 2488999988644222233221 4578888875
No 171
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=20.04 E-value=2.9e+02 Score=30.08 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=59.6
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH---HHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHh
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI---KLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~---e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 663 (721)
+-|++++++|+....+.-+.+.| +.|..|=+.+ +|++. +.+.+++++++.++.+-.+-.-+.--++.++...
T Consensus 107 dIDaVviaTp~p~~H~e~a~~AL-~AGKHVv~~n----k~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eLv~~a~~ 181 (446)
T 3upl_A 107 LIDVIIDATGIPEVGAETGIAAI-RNGKHLVMMN----VEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIEFVSA 181 (446)
T ss_dssp TCCEEEECSCCHHHHHHHHHHHH-HTTCEEEECC----HHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCChHHHHHHHHHHH-HcCCcEEecC----cccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHHHHHHHHh
Confidence 45899999987432222222223 3577764333 34543 4556677777777777665433333445555555
Q ss_pred cCCCCCCCceEEE--ecCCccccCCCHHHH---HHHcCCCHHHH
Q 004968 664 DGLLDSGVKWRPI--VLPDNYIEHASPTQQ---LALAGLTGHHI 702 (721)
Q Consensus 664 ~~~~~~~~~~~~~--g~~d~f~~~g~~~~l---~~~~gl~~~~I 702 (721)
-|| ++... |..+.+....+++.. -+.-|+++.-+
T Consensus 182 ~G~-----~~v~~Gkg~~~~~~~~~t~~~~~~~a~~~~~~~~m~ 220 (446)
T 3upl_A 182 LGY-----EVVSAGKGKNNPLNFDATPDDYRQEADRRNMNVRLL 220 (446)
T ss_dssp TTC-----EEEEEEEEESSCCCTTCCHHHHHHHHHHTTCCHHHH
T ss_pred CCC-----eEEEeccCcCCcccCCCChhHHHHHHHHCCCChHHh
Confidence 554 34444 334555555677666 56678887543
Done!