Your job contains 1 sequence.
>004969
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP
LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL
SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC
ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGA
YGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAF
SNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKV
DRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFY
TRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVV
VNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY
GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK
FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS
MFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPSRSMG
G
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004969
(721 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116179 - symbol:AT4G34280 "AT4G34280" species... 1581 8.7e-184 2
UNIPROTKB|E2R0N2 - symbol:DDB2 "Uncharacterized protein" ... 144 1.4e-06 1
WB|WBGene00009341 - symbol:thoc-3 species:6239 "Caenorhab... 133 1.4e-05 1
UNIPROTKB|Q92466 - symbol:DDB2 "DNA damage-binding protei... 134 1.8e-05 1
TAIR|locus:2176085 - symbol:AT5G64730 "AT5G64730" species... 131 1.8e-05 1
DICTYBASE|DDB_G0284101 - symbol:snrpA1 "U2 small nuclear ... 86 3.7e-05 2
UNIPROTKB|O93377 - symbol:rbbp4-a "Histone-binding protei... 131 3.7e-05 1
UNIPROTKB|Q5M7K4 - symbol:rbbp4 "Histone-binding protein ... 131 3.7e-05 1
UNIPROTKB|Q6INH0 - symbol:rbbp4-b "Histone-binding protei... 131 3.7e-05 1
UNIPROTKB|B0W517 - symbol:CPIJ001500 "Ribosome biogenesis... 123 3.7e-05 2
POMBASE|SPBC1A4.07c - symbol:SPBC1A4.07c "U3 snoRNP-assoc... 131 3.9e-05 1
UNIPROTKB|I3LKT8 - symbol:RBBP4 "Uncharacterized protein"... 130 4.1e-05 1
UNIPROTKB|F2Z4M0 - symbol:RBBP4 "Histone-binding protein ... 130 4.8e-05 1
UNIPROTKB|Q9W7I5 - symbol:RBBP4 "Histone-binding protein ... 130 4.8e-05 1
UNIPROTKB|Q3MHL3 - symbol:RBBP4 "Histone-binding protein ... 130 4.8e-05 1
UNIPROTKB|E2QXR8 - symbol:RBBP4 "Uncharacterized protein"... 130 4.8e-05 1
UNIPROTKB|Q09028 - symbol:RBBP4 "Histone-binding protein ... 130 4.8e-05 1
UNIPROTKB|Q5RF92 - symbol:RBBP4 "Histone-binding protein ... 130 4.8e-05 1
MGI|MGI:1194912 - symbol:Rbbp4 "retinoblastoma binding pr... 130 4.8e-05 1
RGD|1593768 - symbol:Rbbp4 "retinoblastoma binding protei... 130 4.8e-05 1
ZFIN|ZDB-GENE-030131-848 - symbol:rbb4l "retinoblastoma b... 129 6.2e-05 1
UNIPROTKB|Q17BB0 - symbol:AAEL005041 "Ribosome biogenesis... 129 6.2e-05 1
ZFIN|ZDB-GENE-030131-445 - symbol:rbb4 "retinoblastoma bi... 128 8.5e-05 1
UNIPROTKB|E9PC52 - symbol:RBBP7 "Histone-binding protein ... 127 9.8e-05 1
UNIPROTKB|K7GRD3 - symbol:LOC100519001 "Uncharacterized p... 127 9.8e-05 1
UNIPROTKB|Q3SWX8 - symbol:RBBP7 "Histone-binding protein ... 127 0.00010 1
UNIPROTKB|E2RM49 - symbol:RBBP7 "Uncharacterized protein"... 127 0.00010 1
UNIPROTKB|Q16576 - symbol:RBBP7 "Histone-binding protein ... 127 0.00010 1
UNIPROTKB|F1SQR0 - symbol:LOC100519001 "Uncharacterized p... 127 0.00010 1
UNIPROTKB|Q4R304 - symbol:RBBP7 "Histone-binding protein ... 127 0.00010 1
MGI|MGI:1194910 - symbol:Rbbp7 "retinoblastoma binding pr... 127 0.00010 1
RGD|620125 - symbol:Rbbp7 "retinoblastoma binding protein... 127 0.00010 1
UNIPROTKB|Q5R654 - symbol:RBBP7 "Histone-binding protein ... 127 0.00010 1
POMBASE|SPBC713.05 - symbol:SPBC713.05 "WD repeat protein... 124 0.00011 1
UNIPROTKB|E2RM67 - symbol:RBBP7 "Uncharacterized protein"... 127 0.00012 1
UNIPROTKB|I3LV46 - symbol:LOC100519001 "Uncharacterized p... 127 0.00012 1
TAIR|locus:2029939 - symbol:PEX7 "AT1G29260" species:3702... 123 0.00016 1
ZFIN|ZDB-GENE-040426-1954 - symbol:katnb1 "katanin p80 (W... 128 0.00016 1
MGI|MGI:1923896 - symbol:Wdr38 "WD repeat domain 38" spec... 122 0.00019 1
FB|FBgn0039867 - symbol:CstF-50 "CstF-50" species:7227 "D... 124 0.00021 1
SGD|S000000909 - symbol:GLE2 "RNA export factor associate... 122 0.00027 1
CGD|CAL0005939 - symbol:TUP1 species:5476 "Candida albica... 124 0.00029 1
UNIPROTKB|P0CY34 - symbol:TUP1 "Transcriptional repressor... 124 0.00029 1
UNIPROTKB|B4GT01 - symbol:GL26386 "Ribosome biogenesis pr... 112 0.00035 2
UNIPROTKB|Q29KQ0 - symbol:GA19813 "Ribosome biogenesis pr... 112 0.00035 2
TAIR|locus:2043929 - symbol:AT2G43770 "AT2G43770" species... 120 0.00041 1
TAIR|locus:2136133 - symbol:SPA2 "SPA1-related 2" species... 126 0.00045 1
UNIPROTKB|Q8AVH1 - symbol:rbbp7 "Histone-binding protein ... 121 0.00046 1
RGD|1563620 - symbol:RGD1563620 "similar to retinoblastom... 121 0.00046 1
POMBASE|SPCC1672.10 - symbol:mis16 "kinetochore protein M... 121 0.00047 1
UNIPROTKB|Q9I8G9 - symbol:RBBP7 "Histone-binding protein ... 120 0.00059 1
UNIPROTKB|Q6P315 - symbol:rbbp7 "Histone-binding protein ... 120 0.00059 1
FB|FBgn0263979 - symbol:Caf1 "Chromatin assembly factor 1... 120 0.00060 1
DICTYBASE|DDB_G0287273 - symbol:wdr5 "WD40 repeat-contain... 118 0.00065 1
TAIR|locus:2122133 - symbol:AT4G35370 "AT4G35370" species... 119 0.00078 1
UNIPROTKB|F1NUK8 - symbol:SNRNP40 "Uncharacterized protei... 118 0.00083 1
UNIPROTKB|H3BPD8 - symbol:KATNB1 "Katanin p80 WD40 repeat... 112 0.00091 1
UNIPROTKB|H3BPK1 - symbol:KATNB1 "Katanin p80 WD40 repeat... 112 0.00094 1
UNIPROTKB|B4LS78 - symbol:GJ17641 "Ribosome biogenesis pr... 106 0.00096 2
>TAIR|locus:2116179 [details] [associations]
symbol:AT4G34280 "AT4G34280" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 InterPro:IPR003603 SMART:SM00446
GO:GO:0080008 EMBL:BT005961 EMBL:AK117309 IPI:IPI00539348
RefSeq:NP_195154.2 UniGene:At.31517 ProteinModelPortal:Q8GYY7
SMR:Q8GYY7 PRIDE:Q8GYY7 EnsemblPlants:AT4G34280.1 GeneID:829578
KEGG:ath:AT4G34280 TAIR:At4g34280 eggNOG:NOG273125
HOGENOM:HOG000090341 InParanoid:Q8GYY7 OMA:HQEHINV PhylomeDB:Q8GYY7
ProtClustDB:CLSN2680256 Genevestigator:Q8GYY7 Uniprot:Q8GYY7
Length = 783
Score = 1581 (561.6 bits), Expect = 8.7e-184, Sum P(2) = 8.7e-184
Identities = 336/659 (50%), Positives = 434/659 (65%)
Query: 3 TDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLL 62
T+I TLE++Y + C+ H +LPN AILS FF+A+V+KS+N+ C + + ++ +K D+ PLL
Sbjct: 5 TEIATLEEKYIELCKMHGILPNTAILSAFFEAEVKKSRNQRCIMNLYVDRVKYDDYLPLL 64
Query: 63 EVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQ 122
E+C +I +E++ +D+ ++C L +AL L+ +++QKLRVV LHDS FGK+F +++
Sbjct: 65 ELCNEINTSEVQGIDLFVRSACSLEDHYALPLIRSVNQKLRVVHLHDS-FGKNFWQDVFF 123
Query: 123 RGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET 182
+GL C+VLN+RS KLN++GEF ++HTL LD + F EDCFSCMP L LSMC+T
Sbjct: 124 QGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILD-KNRIVGFGEDCFSCMPKLTYLSMCDT 182
Query: 183 RVGNLWTTIAALSKLPSLAELRFQNWLCCDDTG-----NSSGSSDQDDKTDFSQLNICSS 237
V +LWT+ AAL KLPSL ELRFQ W+ C D+ +S SS +DD F + +
Sbjct: 183 LVSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNSESSPSSSTKDDINTFIESDPPVE 242
Query: 238 FGAYGNVVINPDSQILXXXXXXXXXXXXXIQHREYDYLELLSNLVPQLDGEIDLWNEVSF 297
+ +V D + I E D L+ ++ L+GE+ + +V
Sbjct: 243 ADMW-DVAEQMDPSLPVEETLHSMDFSYKIP--EQDDLDSHVSVSAGLNGEVLMREKVRR 299
Query: 298 DAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPI 357
Q ++ S R +V LKYIS ASPIC EKHYR YMI SLPKL+ LDNL I
Sbjct: 300 GKMPYQPKDVSPVDTFTRQFGNVGLKYISSKASPICSEKHYRMYMINSLPKLQVLDNLAI 359
Query: 358 RKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQ 417
RK DR++A TYS FE LPY RK KESVV +L+ RE ++S+ G SQ
Sbjct: 360 RKSDRDKAIETYSANFEDLPYKRK-KESVVRVLENREKRSSK--------------GKSQ 404
Query: 418 YFYTRSLCAAKVGSSAWPCLHTLTVSGNHMG--DENRSFRPRQFEYHPSISCLMVFGTLD 475
Y RSLCAAK+GS A P LH+L + + D+N PRQFEYHP LMVFGTLD
Sbjct: 405 NSYKRSLCAAKMGSPASPLLHSLPFLSSRIQQEDDNSRLCPRQFEYHPLDPSLMVFGTLD 464
Query: 476 GXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535
G YIPS G+ +++LGLCWLK YPS +IAGS NGSLKLYDI+ ++
Sbjct: 465 GEVVVLNHESGKIFRYIPSNGSQSTILGLCWLKIYPSMVIAGSANGSLKLYDIQKASSTV 524
Query: 536 R-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE 594
H +G+VTFDEFDQLTSVH NS D+LFLASGYSK++ALYDI G RLQVFA+MH+E
Sbjct: 525 TTSSHSTSGSVTFDEFDQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQE 584
Query: 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
HINVVKFSNHSP +FATSSFD+DVKLWDLRQ+P +PCYTASS+KGNVMVCFSPDD YLL
Sbjct: 585 HINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSRPCYTASSTKGNVMVCFSPDDRYLL 643
Score = 224 (83.9 bits), Expect = 8.7e-184, Sum P(2) = 8.7e-184
Identities = 52/74 (70%), Positives = 55/74 (74%)
Query: 649 DHYLLGKGSGTSM-FVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC 707
D L G GS SM +VQSLRGDPFRDFNMS+LAAY R SS SEIVKVNLLAS D +E
Sbjct: 711 DVTLEGNGSDFSMMYVQSLRGDPFRDFNMSVLAAYARSSSLSEIVKVNLLASRDSTAEE- 769
Query: 708 SHGQHSRPSRSMGG 721
SHG S PS SMGG
Sbjct: 770 SHGLRSYPSSSMGG 783
>UNIPROTKB|E2R0N2 [details] [associations]
symbol:DDB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051865 "protein autoubiquitination"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0009411 GO:GO:0043234 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0004842
GO:GO:0000209 GO:GO:0051865 KO:K10140 CTD:1643
GeneTree:ENSGT00510000047881 OMA:NSAYFNP GO:GO:0006290
EMBL:AAEX03011491 RefSeq:XP_540746.3 ProteinModelPortal:E2R0N2
Ensembl:ENSCAFT00000014057 GeneID:483626 KEGG:cfa:483626
NextBio:20857995 Uniprot:E2R0N2
Length = 427
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 64/255 (25%), Positives = 105/255 (41%)
Query: 422 RSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVFG 472
R+L K+G +AWP L L S H R F R +HP+ + G
Sbjct: 71 RALHHHKLGKAAWPSLQQGLQQSFLHSLASYRIFQKAAPFDRRATSLAWHPTHPSTLAVG 130
Query: 473 TLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532
+ G ++I GA S+ GL + ++ S G+ +L D +
Sbjct: 131 SKGGDIMLWNFGMKDKPTFIKGIGAGGSITGLKFNPLDTNQFFTSSMEGTTRLQDFKGN- 189
Query: 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH 592
++R + +GT F S+ V++ + + ++ L +++ GR L MH
Sbjct: 190 -TLR-VFTSSGTCNF----WFCSLDVSARSRMVVTGDNVGHVILLNMD-GRELWNLR-MH 241
Query: 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDDH 650
K+ + V + AT+S DQ VK+WDLRQ + + S + + CFSPD
Sbjct: 242 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLHSLPHSHPVNAACFSPDGA 301
Query: 651 YLLGKGSGTSMFVQS 665
LL + + V S
Sbjct: 302 QLLTTDQKSELRVYS 316
>WB|WBGene00009341 [details] [associations]
symbol:thoc-3 species:6239 "Caenorhabditis elegans"
[GO:0000347 "THO complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 KO:K12880 EMBL:Z81523 GeneTree:ENSGT00700000104559
OMA:LAYACDD RefSeq:NP_492416.2 UniGene:Cel.18802
ProteinModelPortal:P91867 SMR:P91867 STRING:P91867 PaxDb:P91867
EnsemblMetazoa:F32H2.4 GeneID:172713 KEGG:cel:CELE_F32H2.4
UCSC:F32H2.4 CTD:172713 WormBase:F32H2.4 HOGENOM:HOG000115395
InParanoid:P91867 NextBio:876703 Uniprot:P91867
Length = 331
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/103 (26%), Positives = 52/103 (50%)
Query: 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFA 610
Q S+ N + + K +++ +++ GR R H + V S P++FA
Sbjct: 38 QCQSIAFNCDGTKLVCGAFDKKVSVANVDGGRLRFSWVGSSHSSSVEQVACSEKQPNLFA 97
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
++S D+++ +WD+RQ +P + S+ GN + +SP D Y +
Sbjct: 98 SASADRNICVWDIRQS--KPTHRISNRVGNFFISWSPCDEYFI 138
>UNIPROTKB|Q92466 [details] [associations]
symbol:DDB2 "DNA damage-binding protein 2" species:9606
"Homo sapiens" [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA]
[GO:0009411 "response to UV" evidence=IDA] [GO:0043234 "protein
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000209 "protein polyubiquitination" evidence=IDA] [GO:0051865
"protein autoubiquitination" evidence=IDA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003684 "damaged DNA binding"
evidence=TAS] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
UniPathway:UPA00143 GO:GO:0009411 GO:GO:0043234 GO:GO:0005654
EMBL:CH471064 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0003684 eggNOG:COG2319 GO:GO:0000209
GO:GO:0051865 GO:GO:0000718 PDB:3EI4 PDB:3I7L PDB:4E54 PDB:4E5Z
PDBsum:3EI4 PDBsum:3I7L PDBsum:4E54 PDBsum:4E5Z KO:K10140 CTD:1643
HOGENOM:HOG000231440 HOVERGEN:HBG000713 OMA:NSAYFNP
OrthoDB:EOG40K7ZV GO:GO:0006290 EMBL:U18300 EMBL:AB107037
EMBL:AB107038 EMBL:AB107039 EMBL:AB107040 EMBL:BT007139
EMBL:AY220533 EMBL:AK313262 EMBL:BC000093 IPI:IPI00021518
IPI:IPI00446284 IPI:IPI00549348 IPI:IPI00607674 IPI:IPI00607727
PIR:I38909 RefSeq:NP_000098.1 UniGene:Hs.700338
ProteinModelPortal:Q92466 SMR:Q92466 DIP:DIP-36670N IntAct:Q92466
STRING:Q92466 PhosphoSite:Q92466 DMDM:12230033 PaxDb:Q92466
PRIDE:Q92466 DNASU:1643 Ensembl:ENST00000256996
Ensembl:ENST00000378600 Ensembl:ENST00000378601
Ensembl:ENST00000378603 GeneID:1643 KEGG:hsa:1643 UCSC:uc001neb.2
UCSC:uc001nee.2 UCSC:uc009yli.1 GeneCards:GC11P047193
HGNC:HGNC:2718 HPA:CAB025912 MIM:278740 MIM:600811
neXtProt:NX_Q92466 Orphanet:276261 PharmGKB:PA27188
InParanoid:Q92466 PhylomeDB:Q92466 ChiTaRS:DDB2
EvolutionaryTrace:Q92466 GenomeRNAi:1643 NextBio:6758 Bgee:Q92466
CleanEx:HS_DDB2 Genevestigator:Q92466 GermOnline:ENSG00000134574
Uniprot:Q92466
Length = 427
Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 59/243 (24%), Positives = 100/243 (41%)
Query: 422 RSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVFG 472
R+L K+G ++WP + L S H D R R +HP+ + G
Sbjct: 71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130
Query: 473 TLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532
+ G ++I GA S+ GL + ++ A S G+ +L D +
Sbjct: 131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-- 188
Query: 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH 592
+I + + T+ S+ V++ + + N+ L +++ G+ L MH
Sbjct: 189 -NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MH 241
Query: 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDDH 650
K+ + V + AT+S DQ VK+WDLRQ + + S + + CFSPD
Sbjct: 242 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 301
Query: 651 YLL 653
LL
Sbjct: 302 RLL 304
>TAIR|locus:2176085 [details] [associations]
symbol:AT5G64730 "AT5G64730" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
HSSP:P16649 GO:GO:0080008 KO:K13124 OMA:CKQGAVR EMBL:AY046038
EMBL:AY113956 IPI:IPI00540873 RefSeq:NP_568993.1 UniGene:At.9776
ProteinModelPortal:Q94AH2 SMR:Q94AH2 PaxDb:Q94AH2 PRIDE:Q94AH2
EnsemblPlants:AT5G64730.1 GeneID:836594 KEGG:ath:AT5G64730
TAIR:At5g64730 InParanoid:Q94AH2 PhylomeDB:Q94AH2
ProtClustDB:CLSN2690079 ArrayExpress:Q94AH2 Genevestigator:Q94AH2
Uniprot:Q94AH2
Length = 299
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/108 (26%), Positives = 53/108 (49%)
Query: 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611
++ VHV S + F + G + + +D+++GR ++ F H +N VKF N S S+ +
Sbjct: 62 EVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRG-HDGEVNAVKF-NDSSSVVVS 119
Query: 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT 659
+ FD+ +++WD R ++P + VM + G GT
Sbjct: 120 AGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGT 167
>DICTYBASE|DDB_G0284101 [details] [associations]
symbol:snrpA1 "U2 small nuclear ribonucleoprotein A'"
species:44689 "Dictyostelium discoideum" [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001611 PROSITE:PS51450
dictyBase:DDB_G0284101 GenomeReviews:CM000153_GR eggNOG:COG4886
EMBL:AAFI02000063 InterPro:IPR003603 SMART:SM00446 KO:K11092
OMA:KPTHILD RefSeq:XP_638751.1 ProteinModelPortal:Q54Q46 SMR:Q54Q46
STRING:Q54Q46 EnsemblProtists:DDB0233176 GeneID:8624421
KEGG:ddi:DDB_G0284101 InParanoid:Q54Q46 ProtClustDB:CLSZ2728949
Uniprot:Q54Q46
Length = 244
Score = 86 (35.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 86 LTGEFALSLMHAIDQ-KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIG 144
LT E L I+ K R ++L + I NL + ++ + K+
Sbjct: 3 LTAELILKSPDYINPCKDRELNLRGNKISS--IENLGATKNQFDTIDFSDNEISKVENFP 60
Query: 145 EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204
+ +R+ TL L + + SF+ED S +P+L L + R+ NL + L L L+E++
Sbjct: 61 KLERVKTL-LFNNNHIKSFEEDFGSSLPHLRALILSNNRINNL----SDLEPLTKLSEIK 115
Query: 205 F 205
F
Sbjct: 116 F 116
Score = 85 (35.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 322 LKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQ 371
+K+IS +P+ + +YR Y+I +P LK +D ++K++RE + + Q
Sbjct: 114 IKFISLLENPVSKKPNYRLYLIHLVPHLKIIDFRKVKKIEREESKKLFGQ 163
>UNIPROTKB|O93377 [details] [associations]
symbol:rbbp4-a "Histone-binding protein RBBP4-A"
species:8355 "Xenopus laevis" [GO:0031497 "chromatin assembly"
evidence=ISS] [GO:0033186 "CAF-1 complex" evidence=ISS] [GO:0035098
"ESC/E(Z) complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568
GO:GO:0007049 GO:GO:0035098 GO:GO:0031497 GO:GO:0033186 KO:K10752
InterPro:IPR022052 Pfam:PF12265 HOVERGEN:HBG053236 EMBL:AF073787
EMBL:BC077257 RefSeq:NP_001083811.1 UniGene:Xl.537
ProteinModelPortal:O93377 SMR:O93377 PRIDE:O93377 GeneID:399131
KEGG:xla:399131 CTD:399131 Xenbase:XB-GENE-482006 Uniprot:O93377
Length = 425
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q5M7K4 [details] [associations]
symbol:rbbp4 "Histone-binding protein RBBP4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0031497 "chromatin assembly"
evidence=ISS] [GO:0033186 "CAF-1 complex" evidence=ISS] [GO:0035098
"ESC/E(Z) complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351
GO:GO:0016568 GO:GO:0007049 GO:GO:0035098 GO:GO:0031497
GO:GO:0033186 InterPro:IPR022052 Pfam:PF12265 HOGENOM:HOG000160330
HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH EMBL:BC088588 UniGene:Str.6093
ProteinModelPortal:Q5M7K4 SMR:Q5M7K4 STRING:Q5M7K4
Xenbase:XB-GENE-482002 InParanoid:Q5M7K4 Uniprot:Q5M7K4
Length = 425
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q6INH0 [details] [associations]
symbol:rbbp4-b "Histone-binding protein RBBP4-B"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0031497
"chromatin assembly" evidence=ISS] [GO:0033186 "CAF-1 complex"
evidence=ISS] [GO:0035098 "ESC/E(Z) complex" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006351 GO:GO:0006338 GO:GO:0007049 GO:GO:0035098
GO:GO:0031497 GO:GO:0033186 KO:K10752 InterPro:IPR022052
Pfam:PF12265 HOVERGEN:HBG053236 EMBL:BC072311 RefSeq:NP_001085185.1
UniGene:Xl.86906 ProteinModelPortal:Q6INH0 SMR:Q6INH0 PRIDE:Q6INH0
DNASU:432269 GeneID:432269 KEGG:xla:432269 CTD:432269
Xenbase:XB-GENE-6255728 Uniprot:Q6INH0
Length = 425
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|B0W517 [details] [associations]
symbol:CPIJ001500 "Ribosome biogenesis protein WDR12
homolog" species:7176 "Culex quinquefasciatus" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS] [GO:0070545 "PeBoW
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0070545 GO:GO:0000463
InterPro:IPR012972 Pfam:PF08154 KO:K14863 HOGENOM:HOG000264464
HAMAP:MF_03029 EMBL:DS231840 RefSeq:XP_001843801.1
UniGene:Cpi.10498 ProteinModelPortal:B0W517 STRING:B0W517
GeneID:6033337 KEGG:cqu:CpipJ_CPIJ001500 VectorBase:CPIJ001500
Uniprot:B0W517
Length = 425
Score = 123 (48.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 40/171 (23%), Positives = 81/171 (47%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AGTVTFDEFDQLT 554
G + G+ W+ + L+ S + ++K++D+ ++ G+ +G +F FD
Sbjct: 258 GHRECISGVQWIDD--NTLVTSSWDHTIKIWDL-----ALNGIKSEISGNKSF--FD--- 305
Query: 555 SVHVNSMDELFLASGYSKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
+ + ++ L + + KN+ LYD N G ++ H + + V++S + +F +
Sbjct: 306 -LSYSKLNGLIITASPDKNLRLYDPKSNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSG 364
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
++D VKLWD R P P + + V+ C + ++L GS S+ V
Sbjct: 365 AYDNHVKLWDYRS-PKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRV 414
Score = 53 (23.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 177 LSMCETRVGNLWTTIAALS-KLPS-LAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNI 234
L+ C NLWTT +P +A ++ W+ D+ S+ QD + N+
Sbjct: 122 LTGCYDNTLNLWTTKGKHKLTIPGHIAPVKGVTWISLDEEKGVFASASQDQTVMLWEWNV 181
Query: 235 CSS 237
++
Sbjct: 182 AAN 184
>POMBASE|SPBC1A4.07c [details] [associations]
symbol:SPBC1A4.07c "U3 snoRNP-associated protein Sof1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0030515 "snoRNA binding" evidence=ISO] [GO:0032040
"small-subunit processome" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 PomBase:SPBC1A4.07c GO:GO:0005737
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 EMBL:CU329671 GO:GO:0030515
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CU329671_GR GO:GO:0006364 GO:GO:0032040
HOGENOM:HOG000210082 KO:K11806 OMA:CASDRSI InterPro:IPR007287
Pfam:PF04158 PIR:T39855 RefSeq:NP_595809.1
ProteinModelPortal:O74340 STRING:O74340 EnsemblFungi:SPBC1A4.07c.1
GeneID:2540796 KEGG:spo:SPBC1A4.07c OrthoDB:EOG4GXJWG
NextBio:20801914 Uniprot:O74340
Length = 436
Score = 131 (51.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 504 LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE 563
+ W +AGS++ +L +YD+R++ R +H V D + SV + +
Sbjct: 235 ISWNPMEAFNFVAGSEDHNLYMYDMRNLK---RALH-----VYKDHVSAVMSVDFSPTGQ 286
Query: 564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623
F++ Y K I +Y++ G V+ + + VKFS + IF+ S D +V+LW
Sbjct: 287 EFVSGSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSD-DSNVRLWRA 345
Query: 624 R 624
R
Sbjct: 346 R 346
>UNIPROTKB|I3LKT8 [details] [associations]
symbol:RBBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042826 "histone deacetylase binding" evidence=IEA]
[GO:0035098 "ESC/E(Z) complex" evidence=IEA] [GO:0033186 "CAF-1
complex" evidence=IEA] [GO:0031497 "chromatin assembly"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0016581
"NuRD complex" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006338
GO:GO:0031497 GO:GO:0016589 GO:GO:0033186
GeneTree:ENSGT00570000079069 OMA:CQPDLRL GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0008094 EMBL:FP312679
EMBL:FP325261 ProteinModelPortal:I3LKT8 PRIDE:I3LKT8
Ensembl:ENSSSCT00000023350 Uniprot:I3LKT8
Length = 390
Score = 130 (50.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 147 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 204
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 205 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 264
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 265 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 303
>UNIPROTKB|F2Z4M0 [details] [associations]
symbol:RBBP4 "Histone-binding protein RBBP4" species:9031
"Gallus gallus" [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0031497 "chromatin assembly" evidence=IEA]
[GO:0033186 "CAF-1 complex" evidence=IEA] [GO:0035098 "ESC/E(Z)
complex" evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006338
GO:GO:0031497 GO:GO:0016589 GO:GO:0033186
GeneTree:ENSGT00570000079069 OMA:CQPDLRL GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0008094 IPI:IPI00592914
EMBL:AADN02043764 ProteinModelPortal:F2Z4M0 SMR:F2Z4M0 PRIDE:F2Z4M0
Ensembl:ENSGALT00000005575 Uniprot:F2Z4M0
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q9W7I5 [details] [associations]
symbol:RBBP4 "Histone-binding protein RBBP4" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0033186
"CAF-1 complex" evidence=ISS] [GO:0031497 "chromatin assembly"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0035098 "ESC/E(Z) complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0006338
GO:GO:0007049 GO:GO:0035098 GO:GO:0031497 GO:GO:0033186 KO:K10752
InterPro:IPR022052 Pfam:PF12265 HOGENOM:HOG000160330 CTD:5928
HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH EMBL:AF097750 IPI:IPI00592914
RefSeq:NP_990183.1 UniGene:Gga.1029 ProteinModelPortal:Q9W7I5
SMR:Q9W7I5 STRING:Q9W7I5 PRIDE:Q9W7I5 GeneID:395658 KEGG:gga:395658
InParanoid:Q9W7I5 NextBio:20815730 Uniprot:Q9W7I5
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q3MHL3 [details] [associations]
symbol:RBBP4 "Histone-binding protein RBBP4" species:9913
"Bos taurus" [GO:0031497 "chromatin assembly" evidence=ISS]
[GO:0033186 "CAF-1 complex" evidence=ISS] [GO:0035098 "ESC/E(Z)
complex" evidence=ISS] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0016581
"NuRD complex" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351
GO:GO:0006338 GO:GO:0007049 GO:GO:0035098 GO:GO:0031497
GO:GO:0016589 GO:GO:0033186 GeneTree:ENSGT00570000079069 KO:K10752
OMA:CQPDLRL GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265
GO:GO:0008094 HOGENOM:HOG000160330 EMBL:BT030530 EMBL:BC105195
IPI:IPI00717704 RefSeq:NP_001070481.1 UniGene:Bt.101874
ProteinModelPortal:Q3MHL3 SMR:Q3MHL3 STRING:Q3MHL3 PRIDE:Q3MHL3
Ensembl:ENSBTAT00000007758 GeneID:767940 KEGG:bta:767940 CTD:5928
HOVERGEN:HBG053236 InParanoid:Q3MHL3 OrthoDB:EOG4DBTDH
NextBio:20918297 Uniprot:Q3MHL3
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|E2QXR8 [details] [associations]
symbol:RBBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0035098 "ESC/E(Z) complex" evidence=IEA]
[GO:0033186 "CAF-1 complex" evidence=IEA] [GO:0031497 "chromatin
assembly" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006338
GO:GO:0031497 GO:GO:0016589 GO:GO:0033186
GeneTree:ENSGT00570000079069 KO:K10752 OMA:CQPDLRL GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0008094 CTD:5928
EMBL:AAEX03001654 RefSeq:XP_864445.1 ProteinModelPortal:E2QXR8
SMR:E2QXR8 PRIDE:E2QXR8 Ensembl:ENSCAFT00000016755 GeneID:478149
KEGG:cfa:478149 NextBio:20853518 Uniprot:E2QXR8
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q09028 [details] [associations]
symbol:RBBP4 "Histone-binding protein RBBP4" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016581 "NuRD complex" evidence=NAS;IDA] [GO:0016589 "NURF
complex" evidence=IDA] [GO:0035098 "ESC/E(Z) complex" evidence=IDA]
[GO:0033186 "CAF-1 complex" evidence=IDA] [GO:0031497 "chromatin
assembly" evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006334 "nucleosome assembly" evidence=TAS] [GO:0034080 "CENP-A
containing nucleosome assembly at centromere" evidence=TAS]
[GO:0016580 "Sin3 complex" evidence=NAS] [GO:0042393 "histone
binding" evidence=NAS] [GO:0042826 "histone deacetylase binding"
evidence=IPI] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Pathway_Interaction_DB:telomerasepathway
Reactome:REACT_115566 GO:GO:0008285 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 EMBL:CH471059 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0035098
GO:GO:0042393 Pathway_Interaction_DB:hedgehog_glipathway
Pathway_Interaction_DB:smad2_3nuclearpathway GO:GO:0034080
Pathway_Interaction_DB:hdac_classi_pathway GO:GO:0000278
GO:GO:0016589 GO:GO:0033186 KO:K10752 OMA:CQPDLRL GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0016580 PDB:2XU7 PDBsum:2XU7
CTD:5928 HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH EMBL:X74262
EMBL:X71810 EMBL:BT007309 EMBL:AK299251 EMBL:AK312571 EMBL:AK222779
EMBL:AC114489 EMBL:BC003092 EMBL:BC015123 EMBL:BC053904
EMBL:BC075836 IPI:IPI00328319 IPI:IPI00645329 IPI:IPI00877802
IPI:IPI00877934 PIR:S36112 RefSeq:NP_001128727.1
RefSeq:NP_001128728.1 RefSeq:NP_005601.1 UniGene:Hs.16003 PDB:3GFC
PDBsum:3GFC ProteinModelPortal:Q09028 SMR:Q09028 DIP:DIP-33495N
IntAct:Q09028 MINT:MINT-90543 STRING:Q09028 PhosphoSite:Q09028
DMDM:1172846 PaxDb:Q09028 PRIDE:Q09028 DNASU:5928
Ensembl:ENST00000373485 Ensembl:ENST00000373493
Ensembl:ENST00000414241 Ensembl:ENST00000458695 GeneID:5928
KEGG:hsa:5928 UCSC:uc001bvr.3 UCSC:uc001bvs.3 GeneCards:GC01P033116
HGNC:HGNC:9887 HPA:CAB006264 MIM:602923 neXtProt:NX_Q09028
PharmGKB:PA34251 InParanoid:Q09028 PhylomeDB:Q09028 ChiTaRS:RBBP4
EvolutionaryTrace:Q09028 GenomeRNAi:5928 NextBio:23094
ArrayExpress:Q09028 Bgee:Q09028 CleanEx:HS_RBBP4
Genevestigator:Q09028 GermOnline:ENSG00000162521 Uniprot:Q09028
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q5RF92 [details] [associations]
symbol:RBBP4 "Histone-binding protein RBBP4" species:9601
"Pongo abelii" [GO:0031497 "chromatin assembly" evidence=ISS]
[GO:0033186 "CAF-1 complex" evidence=ISS] [GO:0035098 "ESC/E(Z)
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568 GO:GO:0007049
GO:GO:0035098 GO:GO:0031497 GO:GO:0033186 KO:K10752
InterPro:IPR022052 Pfam:PF12265 CTD:5928 HOVERGEN:HBG053236
EMBL:CR857269 RefSeq:NP_001124686.1 UniGene:Pab.10290
UniGene:Pab.17706 ProteinModelPortal:Q5RF92 SMR:Q5RF92
GeneID:100461561 KEGG:pon:100461561 InParanoid:Q5RF92
Uniprot:Q5RF92
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>MGI|MGI:1194912 [details] [associations]
symbol:Rbbp4 "retinoblastoma binding protein 4"
species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO;TAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016581 "NuRD complex"
evidence=ISO;IDA] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0031497 "chromatin assembly" evidence=ISO] [GO:0033186 "CAF-1
complex" evidence=ISO] [GO:0035098 "ESC/E(Z) complex"
evidence=ISO;IDA] [GO:0042826 "histone deacetylase binding"
evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1194912 EMBL:CH466552 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0006338 GO:GO:0007049
GO:GO:0035098 GO:GO:0031497 EMBL:AL607123 GO:GO:0016589
GO:GO:0033186 GeneTree:ENSGT00570000079069 KO:K10752 OMA:CQPDLRL
GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265 GO:GO:0008094
HOGENOM:HOG000160330 CTD:5928 HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH
EMBL:U35141 EMBL:CU234133 EMBL:BC138568 EMBL:BC138570
IPI:IPI00828412 PIR:I49366 RefSeq:NP_033056.2 UniGene:Mm.12145
ProteinModelPortal:Q60972 SMR:Q60972 DIP:DIP-32855N IntAct:Q60972
STRING:Q60972 PhosphoSite:Q60972 REPRODUCTION-2DPAGE:Q60972
PaxDb:Q60972 PRIDE:Q60972 Ensembl:ENSMUST00000102598 GeneID:19646
KEGG:mmu:19646 InParanoid:A2A875 NextBio:296894 Bgee:Q60972
CleanEx:MM_RBBP4 Genevestigator:Q60972
GermOnline:ENSMUSG00000057236 Uniprot:Q60972
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>RGD|1593768 [details] [associations]
symbol:Rbbp4 "retinoblastoma binding protein 4" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA;ISO] [GO:0016581 "NuRD complex"
evidence=IEA;ISO] [GO:0016589 "NURF complex" evidence=IEA;ISO]
[GO:0031497 "chromatin assembly" evidence=IEA;ISO] [GO:0033186
"CAF-1 complex" evidence=IEA;ISO] [GO:0035098 "ESC/E(Z) complex"
evidence=IEA;ISO] [GO:0042826 "histone deacetylase binding"
evidence=IEA;ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1593768 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006338 GO:GO:0031497
GO:GO:0016589 GO:GO:0033186 GeneTree:ENSGT00570000079069 KO:K10752
GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265 GO:GO:0008094
EMBL:CH473968 HOGENOM:HOG000160330 CTD:5928 HOVERGEN:HBG053236
OrthoDB:EOG4DBTDH EMBL:BC168994 IPI:IPI00366789
RefSeq:NP_001101382.1 UniGene:Rn.224577 SMR:B5DFB2 STRING:B5DFB2
Ensembl:ENSRNOT00000029177 GeneID:313048 KEGG:rno:313048
NextBio:665530 Genevestigator:B5DFB2 Uniprot:B5DFB2
Length = 425
Score = 130 (50.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>ZFIN|ZDB-GENE-030131-848 [details] [associations]
symbol:rbb4l "retinoblastoma binding protein 4,
like" species:7955 "Danio rerio" [GO:0035098 "ESC/E(Z) complex"
evidence=ISS] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 ZFIN:ZDB-GENE-030131-848 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568 GO:GO:0035098
GeneTree:ENSGT00570000079069 KO:K10752 InterPro:IPR022052
Pfam:PF12265 HOGENOM:HOG000160330 HOVERGEN:HBG053236
OrthoDB:EOG4DBTDH EMBL:BC052110 EMBL:BC067546 IPI:IPI00996854
RefSeq:NP_997775.1 UniGene:Dr.75908 ProteinModelPortal:Q7ZTY4
SMR:Q7ZTY4 STRING:Q7ZTY4 PRIDE:Q7ZTY4 Ensembl:ENSDART00000008144
GeneID:322129 KEGG:dre:322129 CTD:322129 NextBio:20807686
ArrayExpress:Q7ZTY4 Bgee:Q7ZTY4 Uniprot:Q7ZTY4
Length = 426
Score = 129 (50.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGNLLSASDDHTICLWDISGAPKE--GKIVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|Q17BB0 [details] [associations]
symbol:AAEL005041 "Ribosome biogenesis protein WDR12
homolog" species:7159 "Aedes aegypti" [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISS] [GO:0070545 "PeBoW complex" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0070545 GO:GO:0000463 InterPro:IPR012972 Pfam:PF08154
KO:K14863 EMBL:CH477324 RefSeq:XP_001650205.1
ProteinModelPortal:Q17BB0 STRING:Q17BB0
EnsemblMetazoa:AAEL005041-RA GeneID:5565845
KEGG:aag:AaeL_AAEL005041 VectorBase:AAEL005041 HOGENOM:HOG000264464
OMA:LQTRFFT OrthoDB:EOG4BNZTB PhylomeDB:Q17BB0 HAMAP:MF_03029
Uniprot:Q17BB0
Length = 427
Score = 129 (50.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 44/171 (25%), Positives = 82/171 (47%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AGTVTFDEFDQLT 554
G + G+ W+ + L+ S + ++K++D+ ++ G+ G +F FD L+
Sbjct: 260 GHRECISGVQWIDD--NTLVTSSWDHTIKIWDL-----ALSGIKSEICGHKSF--FD-LS 309
Query: 555 SVHVNSMDELFLASGYSKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
H+N L +A+ KN+ LYD N G ++ H + + V++S + +F +
Sbjct: 310 YSHLNG---LIIAASPDKNLRLYDPKSNQGTIVKNTYLGHTQWVQSVRWSTTNEYLFVSG 366
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
++D VKLWD R P P + + V+ C + ++L GS S+ V
Sbjct: 367 AYDNHVKLWDYRS-PKAPIFELIGHEDKVLACDWSNPKFILSGGSDNSVRV 416
>ZFIN|ZDB-GENE-030131-445 [details] [associations]
symbol:rbb4 "retinoblastoma binding protein 4"
species:7955 "Danio rerio" [GO:0033186 "CAF-1 complex"
evidence=ISS] [GO:0031497 "chromatin assembly" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0035098 "ESC/E(Z) complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 ZFIN:ZDB-GENE-030131-445
GO:GO:0005634 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 EMBL:BX465206
GeneTree:ENSGT00570000079069 InterPro:IPR022052 Pfam:PF12265
IPI:IPI00995625 Ensembl:ENSDART00000130326 ArrayExpress:E7FEX2
Bgee:E7FEX2 Uniprot:E7FEX2
Length = 444
Score = 128 (50.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G A T+ + V + +
Sbjct: 182 GLSWNPNLSGCLLSASDDHTICLWDISTVPKE--GKIVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D H +N + F+ +S I AT S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>UNIPROTKB|E9PC52 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005634 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR022052 Pfam:PF12265 EMBL:AL929302 HGNC:HGNC:9890
ChiTaRS:RBBP7 IPI:IPI00879702 ProteinModelPortal:E9PC52 SMR:E9PC52
PRIDE:E9PC52 Ensembl:ENST00000404022 ArrayExpress:E9PC52
Bgee:E9PC52 Uniprot:E9PC52
Length = 416
Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 172 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 229
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 230 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 289
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 290 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 328
>UNIPROTKB|K7GRD3 [details] [associations]
symbol:LOC100519001 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 GeneTree:ENSGT00570000079069 InterPro:IPR022052
Pfam:PF12265 EMBL:CU463287 Ensembl:ENSSSCT00000034836
Uniprot:K7GRD3
Length = 416
Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 172 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 229
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 230 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 289
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 290 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 328
>UNIPROTKB|Q3SWX8 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9913
"Bos taurus" [GO:0016581 "NuRD complex" evidence=ISS] [GO:0030308
"negative regulation of cell growth" evidence=ISS] [GO:0070370
"cellular heat acclimation" evidence=ISS] [GO:0035098 "ESC/E(Z)
complex" evidence=ISS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0030308 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568
GO:GO:0000122 GO:GO:0035098 GeneTree:ENSGT00570000079069
GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370
HOGENOM:HOG000160330 OMA:DGFLLHV HOVERGEN:HBG053236
OrthoDB:EOG4DBTDH EMBL:BC104613 IPI:IPI00709403
RefSeq:NP_001029810.1 UniGene:Bt.4908 ProteinModelPortal:Q3SWX8
SMR:Q3SWX8 STRING:Q3SWX8 PRIDE:Q3SWX8 Ensembl:ENSBTAT00000029923
GeneID:537402 KEGG:bta:537402 CTD:5931 InParanoid:Q3SWX8 KO:K11659
NextBio:20877129 Uniprot:Q3SWX8
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>UNIPROTKB|E2RM49 [details] [associations]
symbol:RBBP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005634 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00570000079069 InterPro:IPR022052 Pfam:PF12265
CTD:5931 KO:K11659 EMBL:AAEX03026166 RefSeq:XP_857851.1
ProteinModelPortal:E2RM49 Ensembl:ENSCAFT00000020249 GeneID:480854
KEGG:cfa:480854 NextBio:20855780 Uniprot:E2RM49
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>UNIPROTKB|Q16576 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016581 "NuRD complex"
evidence=IDA] [GO:0030308 "negative regulation of cell growth"
evidence=IDA] [GO:0035098 "ESC/E(Z) complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0070370 "cellular
heat acclimation" evidence=IDA] [GO:0007275 "multicellular
organismal development" evidence=TAS] [GO:0008283 "cell
proliferation" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0034080 "CENP-A containing nucleosome assembly at centromere"
evidence=TAS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0007275
Pathway_Interaction_DB:telomerasepathway Reactome:REACT_115566
GO:GO:0030308 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0008283 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0000122
GO:GO:0035098 Pathway_Interaction_DB:hedgehog_glipathway
Pathway_Interaction_DB:smad2_3nuclearpathway GO:GO:0034080
Pathway_Interaction_DB:hdac_classi_pathway GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370 PDB:3CFS PDB:3CFV
PDBsum:3CFS PDBsum:3CFV HOGENOM:HOG000160330 OMA:DGFLLHV
HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH CTD:5931 KO:K11659 EMBL:U35143
EMBL:X72841 EMBL:AK091911 EMBL:AL929302 IPI:IPI00395865
IPI:IPI00646512 PIR:I39181 RefSeq:NP_001185648.1 RefSeq:NP_002884.1
UniGene:Hs.495755 ProteinModelPortal:Q16576 SMR:Q16576 DIP:DIP-436N
IntAct:Q16576 MINT:MINT-90512 STRING:Q16576 PhosphoSite:Q16576
DMDM:2494891 PaxDb:Q16576 PeptideAtlas:Q16576 PRIDE:Q16576
Ensembl:ENST00000380084 Ensembl:ENST00000380087 GeneID:5931
KEGG:hsa:5931 UCSC:uc004cxt.3 GeneCards:GC0XM016772 HGNC:HGNC:9890
HPA:CAB037084 MIM:300825 neXtProt:NX_Q16576 PharmGKB:PA34254
PhylomeDB:Q16576 ChiTaRS:RBBP7 EvolutionaryTrace:Q16576
GenomeRNAi:5931 NextBio:23110 PMAP-CutDB:Q16576 ArrayExpress:Q16576
Bgee:Q16576 CleanEx:HS_RBBP7 Genevestigator:Q16576
GermOnline:ENSG00000102054 Uniprot:Q16576
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>UNIPROTKB|F1SQR0 [details] [associations]
symbol:LOC100519001 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0070370 "cellular heat acclimation" evidence=IEA]
[GO:0035098 "ESC/E(Z) complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0016581 "NuRD complex"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0030308 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0000122 GO:GO:0035098
GeneTree:ENSGT00570000079069 InterPro:IPR022052 Pfam:PF12265
GO:GO:0070370 KO:K11659 EMBL:CU463287 RefSeq:XP_003135004.1
ProteinModelPortal:F1SQR0 Ensembl:ENSSSCT00000013288
GeneID:100519001 KEGG:ssc:100519001 Uniprot:F1SQR0
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>UNIPROTKB|Q4R304 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9541
"Macaca fascicularis" [GO:0016581 "NuRD complex" evidence=ISS]
[GO:0030308 "negative regulation of cell growth" evidence=ISS]
[GO:0035098 "ESC/E(Z) complex" evidence=ISS] [GO:0070370 "cellular
heat acclimation" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0030308 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006351 GO:GO:0016568 GO:GO:0035098 GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370 HOVERGEN:HBG053236
EMBL:AB179464 ProteinModelPortal:Q4R304 SMR:Q4R304 PRIDE:Q4R304
Uniprot:Q4R304
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>MGI|MGI:1194910 [details] [associations]
symbol:Rbbp7 "retinoblastoma binding protein 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016581
"NuRD complex" evidence=ISO;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=ISO] [GO:0035098 "ESC/E(Z) complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0070370 "cellular heat
acclimation" evidence=ISO;ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1194910 GO:GO:0030308
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0006338 GO:GO:0000122
GO:GO:0035098 GeneTree:ENSGT00570000079069 GO:GO:0016581
InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370 HOGENOM:HOG000160330
HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH CTD:5931 KO:K11659 EMBL:U35142
EMBL:AK076016 EMBL:AK135779 EMBL:AK135956 EMBL:AK136110
EMBL:AK145531 EMBL:AK145651 EMBL:AK146014 EMBL:AK146904
EMBL:AK146967 EMBL:AK147062 EMBL:AK148852 EMBL:AK153913
EMBL:AK160023 EMBL:AL672123 EMBL:BC003785 IPI:IPI00122698
PIR:I49367 RefSeq:NP_033057.3 UniGene:Mm.270186 UniGene:Mm.486181
ProteinModelPortal:Q60973 SMR:Q60973 IntAct:Q60973 STRING:Q60973
PhosphoSite:Q60973 REPRODUCTION-2DPAGE:Q60973 PaxDb:Q60973
PRIDE:Q60973 Ensembl:ENSMUST00000033720 GeneID:245688
KEGG:mmu:245688 InParanoid:A2AFJ0 NextBio:386918 Bgee:Q60973
CleanEx:MM_RBBP7 Genevestigator:Q60973
GermOnline:ENSMUSG00000031353 Uniprot:Q60973
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>RGD|620125 [details] [associations]
symbol:Rbbp7 "retinoblastoma binding protein 7" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;ISS]
[GO:0030308 "negative regulation of cell growth" evidence=ISO;ISS]
[GO:0035098 "ESC/E(Z) complex" evidence=ISO;ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070370 "cellular heat acclimation" evidence=ISO;ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
RGD:620125 GO:GO:0030308 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568
GO:GO:0000122 GO:GO:0035098 GeneTree:ENSGT00570000079069
GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370
HOGENOM:HOG000160330 HOVERGEN:HBG053236 OrthoDB:EOG4DBTDH CTD:5931
KO:K11659 EMBL:AF090306 EMBL:BC062012 IPI:IPI00194285
RefSeq:NP_114004.1 UniGene:Rn.3600 ProteinModelPortal:Q71UF4
SMR:Q71UF4 STRING:Q71UF4 PRIDE:Q71UF4 Ensembl:ENSRNOT00000066676
GeneID:83712 KEGG:rno:83712 UCSC:RGD:620125 InParanoid:Q71UF4
NextBio:616281 ArrayExpress:Q71UF4 Genevestigator:Q71UF4
GermOnline:ENSRNOG00000005157 Uniprot:Q71UF4
Length = 425
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 337
>UNIPROTKB|Q5R654 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9601
"Pongo abelii" [GO:0016581 "NuRD complex" evidence=ISS] [GO:0030308
"negative regulation of cell growth" evidence=ISS] [GO:0035098
"ESC/E(Z) complex" evidence=ISS] [GO:0070370 "cellular heat
acclimation" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0030308 GO:GO:0006355 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568
GO:GO:0035098 GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265
GO:GO:0070370 HOVERGEN:HBG053236 EMBL:CR860642 UniGene:Pab.19680
ProteinModelPortal:Q5R654 InParanoid:Q5R654 Uniprot:Q5R654
Length = 426
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 45/162 (27%), Positives = 74/162 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A V + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAVFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMMWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNV--MVCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + +V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHTFESHKDEIFQVVHWSPHNETILAS-SGT 338
>POMBASE|SPBC713.05 [details] [associations]
symbol:SPBC713.05 "WD repeat protein, human MAPK
organizer 1 (MORG1) family (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0043234 "protein complex" evidence=NAS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
PomBase:SPBC713.05 GO:GO:0005829 GO:GO:0005634 GO:GO:0043234
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 EMBL:CU329671 GO:GO:0071276 GO:GO:0071585
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0045292
HOGENOM:HOG000091642 KO:K13124 OMA:CKQGAVR RefSeq:NP_595344.1
ProteinModelPortal:Q9C1X0 EnsemblFungi:SPBC713.05.1 GeneID:2541181
KEGG:spo:SPBC713.05 OrthoDB:EOG4K9FNP NextBio:20802293
Uniprot:Q9C1X0
Length = 297
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 38/143 (26%), Positives = 64/143 (44%)
Query: 565 FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624
F + G K I ++D+N+G+ + H IN +++ N SI A+ SFD V+LWD R
Sbjct: 71 FASCGGDKFIQVWDVNTGKVDRRLGG-HLAQINTIRY-NEDSSILASGSFDSKVRLWDCR 128
Query: 625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRD-FNMSILAAYT 683
P + +K +V + + G GT +G D F+ I + T
Sbjct: 129 SNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGTLRTYDIRKGTLSSDYFSHPITSVKT 188
Query: 684 RPSSKSEIVKVNLLASTDHCDKE 706
S+ ++ +L +S D+E
Sbjct: 189 SKSASFSLIS-SLNSSIHLLDQE 210
>UNIPROTKB|E2RM67 [details] [associations]
symbol:RBBP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070370 "cellular heat acclimation"
evidence=IEA] [GO:0035098 "ESC/E(Z) complex" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0030308 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0000122 GO:GO:0035098
GeneTree:ENSGT00570000079069 InterPro:IPR022052 Pfam:PF12265
GO:GO:0070370 OMA:DGFLLHV CTD:5931 KO:K11659 EMBL:AAEX03026166
GeneID:480854 KEGG:cfa:480854 NextBio:20855780 RefSeq:XP_849201.1
ProteinModelPortal:E2RM67 Ensembl:ENSCAFT00000020227 Uniprot:E2RM67
Length = 469
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 225 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 282
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 283 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 342
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 343 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 381
>UNIPROTKB|I3LV46 [details] [associations]
symbol:LOC100519001 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005634 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00570000079069
InterPro:IPR022052 Pfam:PF12265 OMA:DGFLLHV KO:K11659 EMBL:CU463287
GeneID:100519001 KEGG:ssc:100519001 RefSeq:XP_003360284.1
Ensembl:ENSSSCT00000024779 Uniprot:I3LV46
Length = 469
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 225 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 282
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 283 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 342
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 343 LWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILAS-SGT 381
>TAIR|locus:2029939 [details] [associations]
symbol:PEX7 "AT1G29260" species:3702 "Arabidopsis
thaliana" [GO:0005053 "peroxisome matrix targeting signal-2
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006625 "protein
targeting to peroxisome" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0016558 "protein import into
peroxisome matrix" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002684
GenomeReviews:CT485782_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0005778 EMBL:AC021043
HSSP:P16649 GO:GO:0080008 GO:GO:0006625 TCDB:3.A.20.1.2
EMBL:AF130973 EMBL:BT024863 IPI:IPI00548845 PIR:B86415
RefSeq:NP_174220.1 UniGene:At.11271 ProteinModelPortal:Q9XF57
SMR:Q9XF57 STRING:Q9XF57 PaxDb:Q9XF57 PRIDE:Q9XF57
EnsemblPlants:AT1G29260.1 GeneID:839800 KEGG:ath:AT1G29260
GeneFarm:3660 TAIR:At1g29260 HOGENOM:HOG000204332 InParanoid:Q9LP54
KO:K13341 OMA:GHEYAVR PhylomeDB:Q9XF57 ProtClustDB:CLSN2679693
Genevestigator:Q9XF57 Uniprot:Q9XF57
Length = 317
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS--IRGMHYGAGTVTFDEFD 551
S+ ++V +CW + + S LIA +GS+K+YD PPS IR A V
Sbjct: 56 SYDTADAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQ----- 110
Query: 552 QLTSVHVN-SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS--- 607
SV N + + FL S + + L+ ++ ++ F KEH V + +P
Sbjct: 111 ---SVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTF----KEHAYCVYQAVWNPKHGD 163
Query: 608 IFATSSFDQDVKLWDLRQ 625
+FA++S D +++WD+R+
Sbjct: 164 VFASASGDCTLRIWDVRE 181
>ZFIN|ZDB-GENE-040426-1954 [details] [associations]
symbol:katnb1 "katanin p80 (WD repeat containing)
subunit B 1" species:7955 "Danio rerio" [GO:0008017 "microtubule
binding" evidence=IEA] [GO:0008352 "katanin complex" evidence=IEA]
[GO:0051013 "microtubule severing" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0005874 "microtubule"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
InterPro:IPR026962 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 ZFIN:ZDB-GENE-040426-1954 GO:GO:0051301 GO:GO:0007067
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051013 GO:GO:0000922 GO:GO:0005874
GeneTree:ENSGT00700000104017 HOGENOM:HOG000008039 GO:GO:0008352
HAMAP:MF_03022 PANTHER:PTHR19845 CTD:10300 HOVERGEN:HBG052294
EMBL:BC047819 IPI:IPI00483795 RefSeq:NP_998183.1 UniGene:Dr.76809
ProteinModelPortal:Q7ZUV2 Ensembl:ENSDART00000014632 GeneID:406291
KEGG:dre:406291 InParanoid:Q7ZUV2 OMA:YWERNDI OrthoDB:EOG470TGV
NextBio:20817922 ArrayExpress:Q7ZUV2 Bgee:Q7ZUV2 Uniprot:Q7ZUV2
Length = 694
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 54/169 (31%), Positives = 81/169 (47%)
Query: 492 IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551
I S S +G +++AGS +GSL+L+D+ M + A
Sbjct: 56 IMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKAS-------- 107
Query: 552 QLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS--I 608
++S+ + M E +LASG NI L+D+ R+ VF +K H V+ SP
Sbjct: 108 -ISSLDFHPMGE-YLASGSVDSNIKLWDVR--RKGCVFR--YKGHTQAVRCLAFSPDGKW 161
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS 657
A++S D VKLWDL + +T+ +S NV V F P++ YLL GS
Sbjct: 162 LASASDDSTVKLWDLIAGKMITEFTSHTSAVNV-VQFHPNE-YLLASGS 208
>MGI|MGI:1923896 [details] [associations]
symbol:Wdr38 "WD repeat domain 38" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1923896 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00700000104017
HSSP:P63005 EMBL:AL844588 HOGENOM:HOG000091642 EMBL:AK007246
EMBL:AK077027 EMBL:BC115629 IPI:IPI00112284 RefSeq:NP_083963.1
UniGene:Mm.358777 UniGene:Mm.477090 ProteinModelPortal:Q9D994
SMR:Q9D994 PRIDE:Q9D994 Ensembl:ENSMUST00000039535
Ensembl:ENSMUST00000112872 GeneID:76646 KEGG:mmu:76646
UCSC:uc008jnx.2 CTD:401551 HOVERGEN:HBG106736 InParanoid:Q9D994
OMA:VARAKCL OrthoDB:EOG4ZW5BD ChiTaRS:WDR38 NextBio:345540
Bgee:Q9D994 CleanEx:MM_WDR38 Genevestigator:Q9D994 Uniprot:Q9D994
Length = 303
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 46/151 (30%), Positives = 71/151 (47%)
Query: 513 KLIAGSDNG-SLKLYDIRHMP--PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG 569
+LIA S + S++L+D+ ++G TV+F S D LASG
Sbjct: 81 RLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSF------------SPDSKQLASG 128
Query: 570 -YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-P 627
+ K ++++ SGRR+ + H + I FS S S+ AT S+D V +WDLR P
Sbjct: 129 GWDKRAIVWEVQSGRRVHLLVG-HCDSIQSSDFSPTSDSL-ATGSWDSTVHIWDLRASTP 186
Query: 628 IQPCYTASSSKGNVM-VCFSPDDHYLLGKGS 657
+ + GN+ +C+S LL GS
Sbjct: 187 VVSYHNLEGHTGNISCLCYSASG--LLASGS 215
>FB|FBgn0039867 [details] [associations]
symbol:CstF-50 "CstF-50" species:7227 "Drosophila
melanogaster" [GO:0005848 "mRNA cleavage stimulating factor
complex" evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:AE014297 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006379 KO:K14406
OMA:LYDHTDE GeneTree:ENSGT00700000104487 HSSP:P46680 GO:GO:0005848
FlyBase:FBgn0039867 NextBio:835499 EMBL:AY094802 RefSeq:NP_651883.1
UniGene:Dm.11654 SMR:Q9V9V0 IntAct:Q9V9V0 MINT:MINT-287008
STRING:Q9V9V0 EnsemblMetazoa:FBtr0085865 GeneID:43734
KEGG:dme:Dmel_CG2261 UCSC:CG2261-RA CTD:43734 InParanoid:Q9V9V0
GenomeRNAi:43734 Uniprot:Q9V9V0
Length = 424
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 41/170 (24%), Positives = 86/170 (50%)
Query: 506 WLKKYPSK--LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE 563
+L+ +P + L + S +G++KL+DI PS++ H F + + + + + +
Sbjct: 171 YLEFHPKEHILASASRDGTVKLFDIAK--PSVKKAHK-----VFTDCEPVLCLSFHPTGD 223
Query: 564 LFLASGYSKNIA-LYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620
++A G N+ +YD+ + + + + HK + VK+S + ++AT S+D D+K+
Sbjct: 224 -YVAIGTEHNVLRVYDVATTQCFVSAIPSQQHKAGVTCVKYSP-TGKLYATGSYDGDIKI 281
Query: 621 WD-LRQKPIQPCYTASSSKGNVMVC---FSPDDHYLLGKGSGTSMFVQSL 666
WD + + I T + + G +C F+ + YLL G + +++ L
Sbjct: 282 WDGISGRCIN---TIAEAHGGAAICSLEFTRNGKYLLSSGMDSLVYLWEL 328
>SGD|S000000909 [details] [associations]
symbol:GLE2 "RNA export factor associated with the nuclear
pore complex (NPC)" species:4932 "Saccharomyces cerevisiae"
[GO:0005643 "nuclear pore" evidence=IEA;IDA] [GO:0016021 "integral
to membrane" evidence=ISM] [GO:0000973 "posttranscriptional
tethering of RNA polymerase II gene DNA at nuclear periphery"
evidence=IMP] [GO:0000972 "transcription-dependent tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:2000728
"regulation of mRNA export from nucleus in response to heat stress"
evidence=IMP] [GO:0015031 "protein transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SGD:S000000909 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031
GO:GO:0031965 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0005643 EMBL:BK006939 EMBL:U18839
GeneTree:ENSGT00530000063440 TCDB:9.A.14.1.1 GO:GO:0016973
EMBL:AY692884 PIR:S50610 RefSeq:NP_011033.3 RefSeq:NP_011037.3
ProteinModelPortal:P40066 SMR:P40066 DIP:DIP-2452N IntAct:P40066
MINT:MINT-483363 STRING:P40066 PaxDb:P40066 PeptideAtlas:P40066
EnsemblFungi:YER107C GeneID:856844 GeneID:856848 KEGG:sce:YER107C
KEGG:sce:YER112W CYGD:YER107c HOGENOM:HOG000208823 KO:K12623
KO:K14298 OMA:RCITCAP OrthoDB:EOG4C5GT5 NextBio:983165
Genevestigator:P40066 GermOnline:YER107C GO:GO:0031081
GO:GO:0000973 GO:GO:2000728 Uniprot:P40066
Length = 365
Score = 122 (48.0 bits), Expect = 0.00027, P = 0.00027
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSV 556
A +S+ + + + A S +G ++++D+++ P R H + V +
Sbjct: 35 AEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPVLCTRW------ 88
Query: 557 HVNSMDELFLASGYSKN-IALYDINSGRRLQVFADMHKEHINVVKFSNHSPS---IFATS 612
S D +ASG N + LYDI SG+ Q+ MH I V++F PS T
Sbjct: 89 ---SNDGTKVASGGCDNALKLYDIASGQTQQI--GMHSAPIKVLRFVQCGPSNTECIVTG 143
Query: 613 SFDQDVKLWDLRQKPIQPCYT 633
S+D+ +K WD+RQ P QP T
Sbjct: 144 SWDKTIKYWDMRQ-P-QPVST 162
>CGD|CAL0005939 [details] [associations]
symbol:TUP1 species:5476 "Candida albicans" [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=IGI;ISS;IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0045827 "negative regulation of isoprenoid metabolic process"
evidence=IMP] [GO:0009372 "quorum sensing" evidence=IMP]
[GO:0044409 "entry into host" evidence=IMP] [GO:0051834 "evasion or
tolerance of defenses of other organism involved in symbiotic
interaction" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035690 "cellular
response to drug" evidence=IMP] [GO:0071280 "cellular response to
copper ion" evidence=IMP] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006342 "chromatin silencing" evidence=IEA] [GO:0007070
"negative regulation of transcription from RNA polymerase II
promoter during mitosis" evidence=IEA] [GO:0061392 "regulation of
transcription from RNA polymerase II promoter in response to
osmotic stress" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] [GO:2001020 "regulation of response to DNA damage
stimulus" evidence=IEA] [GO:0000433 "negative regulation of
transcription from RNA polymerase II promoter by glucose"
evidence=IEA] [GO:0035955 "negative regulation of dipeptide
transport by negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0043156 "chromatin remodeling in
response to cation stress" evidence=IEA] [GO:0061418 "regulation of
transcription from RNA polymerase II promoter in response to
hypoxia" evidence=IEA] [GO:2000531 "regulation of fatty acid
biosynthetic process by regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001198 "negative
regulation of mating-type specific transcription from RNA
polymerase II promoter" evidence=IEA] [GO:1900429 "negative
regulation of filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:0044182 "filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:0036171
"filamentous growth of a population of unicellular organisms in
response to chemical stimulus" evidence=IMP] [GO:0044114
"development of symbiont in host" evidence=IMP] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0036166 "phenotypic switching"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0036033 "mediator complex binding" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0080025
"phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0001191
"RNA polymerase II transcription factor binding transcription
factor activity involved in negative regulation of transcription"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 CGD:CAL0005939 InterPro:IPR001632 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0000122 GO:GO:0071280
GO:GO:0035690 GO:GO:0009267 GO:GO:0016337 GO:GO:0009372
EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0036170 GO:GO:0044409
PRINTS:PR00319 GO:GO:0036171 GO:GO:1900429 GO:GO:0044114
GO:GO:0036166 GO:GO:0051834 GO:GO:0097308 KO:K06666
InterPro:IPR013890 Pfam:PF08581 ProDom:PD010558 RefSeq:XP_718964.1
RefSeq:XP_719068.1 COMPLUYEAST-2DPAGE:P56093 GeneID:3639369
GeneID:3639474 KEGG:cal:CaO19.13528 KEGG:cal:CaO19.6109
GO:GO:0045827 Uniprot:P0CY34
Length = 512
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 513 KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK 572
+L++GS + S++++D+R S+ T++ + D +T+V V+ +L A +
Sbjct: 311 RLVSGSGDRSVRIWDLRTSQCSL--------TLSIE--DGVTTVAVSPDGKLIAAGSLDR 360
Query: 573 NIALYDINSG---RRLQVFADM---HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626
+ ++D +G RL + H++ + V FSN+ I A+ S D+ VKLW L K
Sbjct: 361 TVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQI-ASGSLDRTVKLWHLEGK 419
Query: 627 PIQP--C-YTASSSKGNVM-VCFSPDDHYLLG--KGSGTSMFVQSLRGDP 670
+ C T K V+ VC +PD+ Y+L K G +F G+P
Sbjct: 420 SDKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGV-IFWDQASGNP 468
>UNIPROTKB|P0CY34 [details] [associations]
symbol:TUP1 "Transcriptional repressor TUP1" species:237561
"Candida albicans SC5314" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009372 "quorum sensing" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016337 "cell-cell adhesion"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0035690 "cellular response to drug" evidence=IMP] [GO:0036166
"phenotypic switching" evidence=IMP] [GO:0036170 "filamentous
growth of a population of unicellular organisms in response to
starvation" evidence=IMP] [GO:0036171 "filamentous growth of a
population of unicellular organisms in response to chemical
stimulus" evidence=IMP] [GO:0036180 "filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0044114 "development of symbiont in host"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] [GO:0044409 "entry into host"
evidence=IMP] [GO:0045827 "negative regulation of isoprenoid
metabolic process" evidence=IMP] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IGI;IMP] [GO:0051834
"evasion or tolerance of defenses of other organism involved in
symbiotic interaction" evidence=IMP] [GO:0071216 "cellular response
to biotic stimulus" evidence=IMP] [GO:0071280 "cellular response to
copper ion" evidence=IMP] [GO:0097308 "cellular response to
farnesol" evidence=IMP] [GO:1900429 "negative regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 CGD:CAL0005939 InterPro:IPR001632 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0000122 GO:GO:0071280
GO:GO:0035690 GO:GO:0009267 GO:GO:0016337 GO:GO:0009372
EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0036170 GO:GO:0044409
PRINTS:PR00319 GO:GO:0036171 GO:GO:1900429 GO:GO:0044114
GO:GO:0036166 GO:GO:0051834 GO:GO:0097308 KO:K06666
InterPro:IPR013890 Pfam:PF08581 ProDom:PD010558 RefSeq:XP_718964.1
RefSeq:XP_719068.1 COMPLUYEAST-2DPAGE:P56093 GeneID:3639369
GeneID:3639474 KEGG:cal:CaO19.13528 KEGG:cal:CaO19.6109
GO:GO:0045827 Uniprot:P0CY34
Length = 512
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 513 KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK 572
+L++GS + S++++D+R S+ T++ + D +T+V V+ +L A +
Sbjct: 311 RLVSGSGDRSVRIWDLRTSQCSL--------TLSIE--DGVTTVAVSPDGKLIAAGSLDR 360
Query: 573 NIALYDINSG---RRLQVFADM---HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626
+ ++D +G RL + H++ + V FSN+ I A+ S D+ VKLW L K
Sbjct: 361 TVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQI-ASGSLDRTVKLWHLEGK 419
Query: 627 PIQP--C-YTASSSKGNVM-VCFSPDDHYLLG--KGSGTSMFVQSLRGDP 670
+ C T K V+ VC +PD+ Y+L K G +F G+P
Sbjct: 420 SDKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGV-IFWDQASGNP 468
>UNIPROTKB|B4GT01 [details] [associations]
symbol:GL26386 "Ribosome biogenesis protein WDR12 homolog"
species:7234 "Drosophila persimilis" [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISS] [GO:0070545 "PeBoW complex" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0070545
GO:GO:0000463 EMBL:CH479189 InterPro:IPR012972 Pfam:PF08154
KO:K14863 OrthoDB:EOG4BNZTB HAMAP:MF_03029 RefSeq:XP_002021667.1
ProteinModelPortal:B4GT01 EnsemblMetazoa:FBtr0192001 GeneID:6596580
KEGG:dpe:Dper_GL26386 FlyBase:FBgn0163968 Uniprot:B4GT01
Length = 419
Score = 112 (44.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 44/170 (25%), Positives = 72/170 (42%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G S+ + W+ S L+ GS + +LK++D+ S+ G+ T FD S
Sbjct: 249 GHRESISAVQWMDA--STLLTGSWDHTLKVWDL-----SLEGIKAEIST-NKSIFDASYS 300
Query: 556 VHVNSMDELFLASGYSKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
++ L L + KN+ LYD N G ++ H + V +S +F + S
Sbjct: 301 ----KLNHLILTASADKNLRLYDSRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGS 356
Query: 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
+D KLWD R P P Y V+ + Y++ GS ++ V
Sbjct: 357 YDNQNKLWDCRS-PKAPLYDLLGHGEKVLDIDWTNPKYIVSGGSDNTVRV 405
Score = 55 (24.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 177 LSMCETRVGNLWTTIAA-LSKLPS-LAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNI 234
L+ C N+WT + +P A ++ +W+ DD SS QD Q N+
Sbjct: 119 LTGCYDNTLNIWTNKGKHILTIPGHTAPIKAVDWISLDDDTGRFVSSSQDQTAMLWQWNV 178
>UNIPROTKB|Q29KQ0 [details] [associations]
symbol:GA19813 "Ribosome biogenesis protein WDR12 homolog"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS] [GO:0070545 "PeBoW
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:CH379061 GO:GO:0070545
GO:GO:0000463 InterPro:IPR012972 Pfam:PF08154 HSSP:P61964 KO:K14863
OMA:LQTRFFT OrthoDB:EOG4BNZTB HAMAP:MF_03029 RefSeq:XP_001356065.1
ProteinModelPortal:Q29KQ0 GeneID:4816649 KEGG:dpo:Dpse_GA19813
FlyBase:FBgn0079809 InParanoid:Q29KQ0 Uniprot:Q29KQ0
Length = 419
Score = 112 (44.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 44/170 (25%), Positives = 72/170 (42%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G S+ + W+ S L+ GS + +LK++D+ S+ G+ T FD S
Sbjct: 249 GHRESISAVQWMDA--STLLTGSWDHTLKVWDL-----SLEGIKAEIST-NKSIFDASYS 300
Query: 556 VHVNSMDELFLASGYSKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
++ L L + KN+ LYD N G ++ H + V +S +F + S
Sbjct: 301 ----KLNHLILTASADKNLRLYDSRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGS 356
Query: 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
+D KLWD R P P Y V+ + Y++ GS ++ V
Sbjct: 357 YDNQNKLWDCRS-PKAPLYDLLGHGEKVLDIDWSNPKYIVSGGSDNTVRV 405
Score = 55 (24.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 177 LSMCETRVGNLWTTIAA-LSKLPS-LAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNI 234
L+ C N+WT + +P A ++ +W+ DD SS QD Q N+
Sbjct: 119 LTGCYDNTLNIWTNKGKHILTIPGHTAPIKAVDWISLDDDTGRFVSSSQDQTAMLWQWNV 178
>TAIR|locus:2043929 [details] [associations]
symbol:AT2G43770 "AT2G43770" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002685 GenomeReviews:CT485783_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
HSSP:P16649 GO:GO:0080008 HOGENOM:HOG000091644 KO:K12857
OMA:HAGSVNE EMBL:AC002333 UniGene:At.66405 EMBL:AY093182
EMBL:BT008828 IPI:IPI00529336 PIR:C84870 RefSeq:NP_181905.1
ProteinModelPortal:O22826 SMR:O22826 IntAct:O22826 STRING:O22826
PaxDb:O22826 PRIDE:O22826 EnsemblPlants:AT2G43770.1 GeneID:818980
KEGG:ath:AT2G43770 TAIR:At2g43770 InParanoid:O22826
PhylomeDB:O22826 ProtClustDB:CLSN2683090 ArrayExpress:O22826
Genevestigator:O22826 Uniprot:O22826
Length = 343
Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
Identities = 49/185 (26%), Positives = 80/185 (43%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G N++L L W S++++ S + +++ +D+ I+ M A +F + S
Sbjct: 94 GHKNAILDLHWTSD-GSQIVSASPDKTVRAWDVE-TGKQIKKM---AEHSSF-----VNS 143
Query: 556 VHVNSMDELFLASGYSKNIA-LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614
+ SG A L+D+ +Q F D K I V FS+ + IF T
Sbjct: 144 CCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDAADKIF-TGGV 200
Query: 615 DQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGTSMFVQSLRGDPFRD 673
D DVK+WDLR+ + T + + + SPD YLL G + V +R P+
Sbjct: 201 DNDVKVWDLRKG--EATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMR--PYAP 256
Query: 674 FNMSI 678
N +
Sbjct: 257 QNRCV 261
>TAIR|locus:2136133 [details] [associations]
symbol:SPA2 "SPA1-related 2" species:3702 "Arabidopsis
thaliana" [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005834 "heterotrimeric G-protein complex" evidence=ISS]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR017986 InterPro:IPR000719 InterPro:IPR001680
InterPro:IPR011009 InterPro:IPR015943 Pfam:PF00069 Pfam:PF00400
PROSITE:PS50011 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 SUPFAM:SSF56112 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0004672 GO:GO:0009585
GO:GO:0080008 EMBL:AF080120 EMBL:AL049876 HOGENOM:HOG000029775
EMBL:AK229182 IPI:IPI00538672 PIR:T01922 PIR:T01923 PIR:T08190
RefSeq:NP_192849.4 UniGene:At.46392 ProteinModelPortal:Q9T014
SMR:Q9T014 IntAct:Q9T014 STRING:Q9T014 PRIDE:Q9T014
EnsemblPlants:AT4G11110.1 GeneID:826712 KEGG:ath:AT4G11110
GeneFarm:3132 TAIR:At4g11110 InParanoid:Q0WP97 OMA:FGGHTNE
PhylomeDB:Q9T014 ProtClustDB:CLSN2920287 Genevestigator:Q9T014
Uniprot:Q9T014
Length = 1036
Score = 126 (49.4 bits), Expect = 0.00045, P = 0.00045
Identities = 58/211 (27%), Positives = 97/211 (45%)
Query: 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS 581
+K+Y+ + +HY A + +L+ V N+ +LAS Y + L+D+ +
Sbjct: 747 IKIYEFNSLFNESVDIHYPA--IEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTT 804
Query: 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV 641
G+ + F + H++ V FS P+ A+ S D VKLW++ ++ C + NV
Sbjct: 805 GQAISHFIE-HEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERN---CLGTIRNIANV 860
Query: 642 M-VCFSPDDHYLLGKGSGT-SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLL-- 697
V FSP +LL GS + LR R IL+ + + S ++ + L
Sbjct: 861 CCVQFSPQSSHLLAFGSSDFRTYCYDLRN--LRT-PWCILSGHNKAVSYAKFLDNETLVT 917
Query: 698 ASTDHC----D-KECSHGQHSRPSRSM--GG 721
ASTD+ D K+ +HG S + S+ GG
Sbjct: 918 ASTDNTLKLWDLKKTTHGGLSTNACSLTFGG 948
>UNIPROTKB|Q8AVH1 [details] [associations]
symbol:rbbp7 "Histone-binding protein RBBP7" species:8355
"Xenopus laevis" [GO:0035098 "ESC/E(Z) complex" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0006260 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006351 GO:GO:0016568 GO:GO:0035098 InterPro:IPR022052
Pfam:PF12265 HOVERGEN:HBG053236 CTD:5931 KO:K11659 EMBL:BC042283
RefSeq:NP_001080364.1 UniGene:Xl.55215 ProteinModelPortal:Q8AVH1
SMR:Q8AVH1 PRIDE:Q8AVH1 GeneID:380056 KEGG:xla:380056
Xenbase:XB-GENE-487913 Uniprot:Q8AVH1
Length = 425
Score = 121 (47.7 bits), Expect = 0.00046, P = 0.00046
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A V + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDISAGPKE--GKVVDAKAVFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHSFESHKDEIFQVHWSPHNETILAS-SGT 337
>RGD|1563620 [details] [associations]
symbol:RGD1563620 "similar to retinoblastoma binding protein 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1563620 GO:GO:0005634 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00570000079069
InterPro:IPR022052 Pfam:PF12265 OrthoDB:EOG4DBTDH IPI:IPI00368073
ProteinModelPortal:D4A250 Ensembl:ENSRNOT00000033132 Uniprot:D4A250
Length = 425
Score = 121 (47.7 bits), Expect = 0.00046, P = 0.00046
Identities = 43/161 (26%), Positives = 75/161 (46%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI +P G GA T+ + V + +
Sbjct: 182 GLSWNPYLSGYLLSASDDHTICLWDISAVPKE--GKVVGAKTIFTGHTAVVEDVSWHLLH 239
Query: 563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D S + D + +N + F+ +S I A+ S D+ V
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAYTAEVNCLSFNPNSEFILASGSPDKTVA 299
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338
>POMBASE|SPCC1672.10 [details] [associations]
symbol:mis16 "kinetochore protein Mis16" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0016575 "histone deacetylation" evidence=IMP]
[GO:0031055 "chromatin remodeling at centromere" evidence=IMP]
[GO:0031066 "regulation of histone deacetylation at centromere"
evidence=IMP] [GO:0031511 "Mis6-Sim4 complex" evidence=TAS]
[GO:0034501 "protein localization to kinetochore" evidence=IMP]
[GO:0051382 "kinetochore assembly" evidence=TAS] [GO:0070317
"negative regulation of G0 to G1 transition" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
PomBase:SPCC1672.10 GO:GO:0005829 GO:GO:0070317 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006281 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0000790 GO:GO:0000070
GO:GO:0000778 GO:GO:0034501 GO:GO:0006995 GO:GO:0051382
GO:GO:0016575 KO:K10752 InterPro:IPR022052 Pfam:PF12265 PIR:T41054
RefSeq:NP_587881.1 ProteinModelPortal:O94244 SMR:O94244
IntAct:O94244 STRING:O94244 PRIDE:O94244 EnsemblFungi:SPCC1672.10.1
GeneID:2539214 KEGG:spo:SPCC1672.10 HOGENOM:HOG000160330
OMA:NSCIIAT OrthoDB:EOG412QFD NextBio:20800384 GO:GO:0031511
GO:GO:0031055 GO:GO:0031066 Uniprot:O94244
Length = 430
Score = 121 (47.7 bits), Expect = 0.00047, P = 0.00047
Identities = 54/230 (23%), Positives = 86/230 (37%)
Query: 438 HTLTVSGN--HMGDENRSFRPRQFEYHPSISCLMVFGTLDGXXXXXXXXXXXXXSYIPSF 495
+T+ +S H GD NR+ R P I M G +P
Sbjct: 120 YTIEISQKIPHDGDVNRA---RYMPQKPEIIATMGEGGNAYIFDTTCHDALTTGEALPQA 176
Query: 496 ---GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-D 551
G GLCW P L G+++ + L+D++ + + + D
Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSETKVISPIAKYHRHTD 236
Query: 552 QLTSVHVNSMDELFLASGYSK-NIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSI 608
+ V + E LAS + ++D +N H + IN V + + +
Sbjct: 237 IVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYL 296
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGS 657
AT+S D+ V LWDLR P Q +T + V + +SP D +L S
Sbjct: 297 LATASADKTVALWDLRN-PYQRLHTLEGHEDEVYGLEWSPHDEPILASSS 345
>UNIPROTKB|Q9I8G9 [details] [associations]
symbol:RBBP7 "Histone-binding protein RBBP7" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0030308
"negative regulation of cell growth" evidence=IEA] [GO:0070370
"cellular heat acclimation" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016581 "NuRD complex" evidence=ISS] [GO:0035098 "ESC/E(Z)
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0030308 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568
GO:GO:0000122 GO:GO:0035098 GeneTree:ENSGT00570000079069
GO:GO:0016581 InterPro:IPR022052 Pfam:PF12265 GO:GO:0070370
HOGENOM:HOG000160330 OMA:DGFLLHV HOVERGEN:HBG053236
OrthoDB:EOG4DBTDH CTD:5931 KO:K11659 EMBL:AF279275 IPI:IPI00594478
PIR:JC7558 RefSeq:NP_990001.1 UniGene:Gga.202
ProteinModelPortal:Q9I8G9 SMR:Q9I8G9 STRING:Q9I8G9 PRIDE:Q9I8G9
Ensembl:ENSGALT00000026698 GeneID:395390 KEGG:gga:395390
InParanoid:Q9I8G9 NextBio:20815474 Uniprot:Q9I8G9
Length = 424
Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
Identities = 43/161 (26%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 180 GLSWNSNLKGHLLSASDDHTVCLWDISAGPKE--GKIVDAKAIFTGHSAVVEDVAWHLLH 237
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 238 ESLFGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 297
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 298 LWDLRNLKLK-LHSFESHKDEIFQVHWSPHNETILAS-SGT 336
>UNIPROTKB|Q6P315 [details] [associations]
symbol:rbbp7 "Histone-binding protein RBBP7" species:8364
"Xenopus (Silurana) tropicalis" [GO:0035098 "ESC/E(Z) complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006260 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0016568 GO:GO:0035098
GeneTree:ENSGT00570000079069 InterPro:IPR022052 Pfam:PF12265
OMA:DGFLLHV HOVERGEN:HBG053236 CTD:5931 KO:K11659 EMBL:BC064219
RefSeq:NP_989285.1 UniGene:Str.17153 ProteinModelPortal:Q6P315
SMR:Q6P315 STRING:Q6P315 Ensembl:ENSXETT00000002157 GeneID:394900
KEGG:xtr:394900 Xenbase:XB-GENE-487909 InParanoid:Q6P315
Uniprot:Q6P315
Length = 425
Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
Identities = 43/161 (26%), Positives = 73/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P G A + + V + +
Sbjct: 181 GLSWNSNLSGHLLSASDDHTVCLWDISAGPKE--GKVVDAKAIFTGHSAVVEDVAWHLLH 238
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 299 LWDLRNLKLK-LHSFESHKDEIFQVHWSPHNETILAS-SGT 337
>FB|FBgn0263979 [details] [associations]
symbol:Caf1 "Chromatin assembly factor 1 subunit"
species:7227 "Drosophila melanogaster" [GO:0016584 "nucleosome
positioning" evidence=IDA] [GO:0042826 "histone deacetylase
binding" evidence=ISS;IDA] [GO:0031497 "chromatin assembly"
evidence=ISS;IDA] [GO:0033186 "CAF-1 complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0042393 "histone
binding" evidence=IDA;NAS;TAS] [GO:0016590 "ACF complex"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006334
"nucleosome assembly" evidence=NAS;IDA] [GO:0016573 "histone
acetylation" evidence=ISS;IDA] [GO:0016589 "NURF complex"
evidence=NAS;TAS;IPI] [GO:0035035 "histone acetyltransferase
binding" evidence=ISS;IPI] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0006335 "DNA replication-dependent nucleosome assembly"
evidence=NAS] [GO:0003682 "chromatin binding" evidence=NAS]
[GO:0006342 "chromatin silencing" evidence=IPI] [GO:0006351
"transcription, DNA-dependent" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0046976
"histone methyltransferase activity (H3-K27 specific)" evidence=IC]
[GO:0046974 "histone methyltransferase activity (H3-K9 specific)"
evidence=IC] [GO:0016571 "histone methylation" evidence=IDA]
[GO:0035098 "ESC/E(Z) complex" evidence=IDA] [GO:0007307 "eggshell
chorion gene amplification" evidence=IC] [GO:0031523 "Myb complex"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016581 "NuRD complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0031491
"nucleosome binding" evidence=IDA] [GO:0042054 "histone
methyltransferase activity" evidence=IDA] [GO:0035097 "histone
methyltransferase complex" evidence=IDA] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0048812 "neuron projection morphogenesis" evidence=IMP]
[GO:0070822 "Sin3-type complex" evidence=IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0008284 "positive regulation of
cell proliferation" evidence=IMP] [GO:0061085 "regulation of
histone H3-K27 methylation" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:AE014297 GO:GO:0007346
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0008284 GO:GO:0006281 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016573 GO:GO:0006351
GO:GO:0005667 GO:GO:0000122 GO:GO:0000910 GO:GO:0048813
GO:GO:0007517 GO:GO:0035098 GO:GO:0007379 GO:GO:0006342
GO:GO:0051567 GO:GO:0042393 GO:GO:0005700 GO:GO:0042826
GO:GO:0035035 GO:GO:0042766 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0033186 EMBL:U62388 EMBL:AM294392 EMBL:AM294393
EMBL:AM294394 EMBL:AM294395 EMBL:AM294396 EMBL:AM294397
EMBL:AM294398 EMBL:AM294399 EMBL:AM294400 EMBL:AM294401
EMBL:AM294402 EMBL:AM294403 EMBL:AY061408 RefSeq:NP_524354.1
UniGene:Dm.1657 PDB:2XYI PDB:2YB8 PDB:2YBA PDB:3C99 PDB:3C9C
PDBsum:2XYI PDBsum:2YB8 PDBsum:2YBA PDBsum:3C99 PDBsum:3C9C
ProteinModelPortal:Q24572 SMR:Q24572 DIP:DIP-23697N IntAct:Q24572
MINT:MINT-252601 STRING:Q24572 PaxDb:Q24572 PRIDE:Q24572
EnsemblMetazoa:FBtr0083052 GeneID:41836 KEGG:dme:Dmel_CG4236
CTD:41836 FlyBase:FBgn0263347 GeneTree:ENSGT00570000079069
InParanoid:Q24572 KO:K10752 OMA:CQPDLRL OrthoDB:EOG4ZCRKP
PhylomeDB:Q24572 EvolutionaryTrace:Q24572 GenomeRNAi:41836
NextBio:825799 Bgee:Q24572 GermOnline:CG4236 GO:GO:0031523
GO:GO:0016581 GO:GO:0070822 GO:GO:0007307 GO:GO:0070734
InterPro:IPR022052 Pfam:PF12265 Uniprot:Q24572
Length = 430
Score = 120 (47.3 bits), Expect = 0.00060, P = 0.00060
Identities = 43/161 (26%), Positives = 74/161 (45%)
Query: 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
GL W L++ SD+ ++ L+DI P R + A + + V + +
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID--AKNIFTGHTAVVEDVAWHLLH 243
Query: 563 E-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
E LF + + + ++D N+ + D H +N + F+ +S I AT S D+ V
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 304 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 342
>DICTYBASE|DDB_G0287273 [details] [associations]
symbol:wdr5 "WD40 repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0051568 "histone H3-K4
methylation" evidence=ISS] [GO:0042393 "histone binding"
evidence=ISS] [GO:0035097 "histone methyltransferase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 dictyBase:DDB_G0287273
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CM000154_GR GO:GO:0042393 GO:GO:0051568 GO:GO:0035097
EMBL:AAFI02000099 HSSP:P61964 KO:K14963 OMA:KLWKSDT
RefSeq:XP_637302.1 ProteinModelPortal:Q54KL5 SMR:Q54KL5
EnsemblProtists:DDB0232948 GeneID:8626039 KEGG:ddi:DDB_G0287273
ProtClustDB:CLSZ2430012 Uniprot:Q54KL5
Length = 335
Score = 118 (46.6 bits), Expect = 0.00065, P = 0.00065
Identities = 36/161 (22%), Positives = 76/161 (47%)
Query: 496 GAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRH--MPPSIRGMHYGAGTVTFDEFDQ 552
G + + W + SKLI + SD+ ++K++D+ M +++G H E+
Sbjct: 86 GHKEGISDIAWSQD--SKLICSASDDKTIKIWDVESGKMVKTLKG-H--------KEY-- 132
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
+ V N L ++ + +N+ ++D+N+G ++ + H + + V F N ++ +
Sbjct: 133 VFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMIS-AHSDPVTGVHF-NRDGTLVVSG 190
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
S+D V++WD + + K V FSP+ ++L
Sbjct: 191 SYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVL 231
>TAIR|locus:2122133 [details] [associations]
symbol:AT4G35370 "AT4G35370" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002687 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 KO:K14791 IPI:IPI00522472
RefSeq:NP_195263.4 UniGene:At.54614 ProteinModelPortal:F4JN04
SMR:F4JN04 PRIDE:F4JN04 EnsemblPlants:AT4G35370.1 GeneID:829690
KEGG:ath:AT4G35370 OMA:FRNIVAS Uniprot:F4JN04
Length = 433
Score = 119 (46.9 bits), Expect = 0.00078, P = 0.00078
Identities = 46/168 (27%), Positives = 75/168 (44%)
Query: 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-SVHVN 559
V + W P L++GS + ++ L D R PS G+ + T + ++L H
Sbjct: 262 VHAVAWNNYTPEVLLSGSRDRTVVLKDGRD--PSNSGLKWS----TEAKVEKLAWDPHSE 315
Query: 560 SMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFDQDV 618
+ L G K +D + F H ++ + ++ H+P++ AT S D+ V
Sbjct: 316 HSFVVSLKDGTVKG---FDTRASDLSPSFIIHAHDSEVSSISYNIHAPNLLATGSADESV 372
Query: 619 KLWDLRQKPIQPCYTASS--SKGNVM-VCFSPDDHYLLGKGSGTSMFV 663
KLWDL QP + A++ + G V V FS D +LL G + V
Sbjct: 373 KLWDLSNN--QPSWIATNKPNAGEVFSVSFSADCPFLLAVGGSEGLNV 418
>UNIPROTKB|F1NUK8 [details] [associations]
symbol:SNRNP40 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013 OMA:HAGSVNE
GeneTree:ENSGT00690000101787 EMBL:AADN02051366 EMBL:AADN02051367
EMBL:AADN02051368 EMBL:AADN02051369 EMBL:AADN02051370
EMBL:AADN02051371 EMBL:AADN02051372 EMBL:AADN02051373
IPI:IPI00593723 Ensembl:ENSGALT00000041219 ArrayExpress:F1NUK8
Uniprot:F1NUK8
Length = 384
Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
Identities = 38/172 (22%), Positives = 77/172 (44%)
Query: 500 SVLGLCW-LKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV 558
S + C+ ++ P + GSD+G++KL+DIR A TF Q+ +V
Sbjct: 179 SFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK----------AAVQTFQNTYQVLAVTF 228
Query: 559 NSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618
N + ++ G +I ++D+ + H + + + S+ S +++ D V
Sbjct: 229 NDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG-HADSVTGLSLSSEG-SYLLSNAMDNTV 286
Query: 619 KLWDLRQ-KPIQPCY-----TASSSKGNVMVC-FSPDDHYLLGKGSGTSMFV 663
++WD+R P + C + + N++ C +SPD + G + ++V
Sbjct: 287 RIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYV 338
>UNIPROTKB|H3BPD8 [details] [associations]
symbol:KATNB1 "Katanin p80 WD40 repeat-containing subunit
B1" species:9606 "Homo sapiens" [GO:0008017 "microtubule binding"
evidence=IEA] [GO:0008352 "katanin complex" evidence=IEA]
[GO:0051013 "microtubule severing" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR026962
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051013
EMBL:AC018552 EMBL:AC092118 GO:GO:0008352 PANTHER:PTHR19845
HGNC:HGNC:6217 Ensembl:ENST00000566726 Bgee:H3BPD8 Uniprot:H3BPD8
Length = 208
Score = 112 (44.5 bits), Expect = 0.00091, P = 0.00091
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 507 LKKYPSKLIA-GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565
L K +L+A G D+ + L+ I + P I + G + + SV +N+ +EL
Sbjct: 32 LGKASGRLLATGGDDCRVNLWSI-NKPNCIMSL---TGHTS-----PVESVRLNTPEELI 82
Query: 566 LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625
+A S +I ++D+ + + L+ HK +I + F + + A+ S D ++KLWD+R+
Sbjct: 83 VAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFV-ASGSQDTNIKLWDIRR 140
Query: 626 KPIQPCYTASSSKGNVMVCFSPDDHYL 652
K Y S + FSPD +L
Sbjct: 141 KGCVFRYRGHSQAVRCLR-FSPDGKWL 166
>UNIPROTKB|H3BPK1 [details] [associations]
symbol:KATNB1 "Katanin p80 WD40 repeat-containing subunit
B1" species:9606 "Homo sapiens" [GO:0008017 "microtubule binding"
evidence=IEA] [GO:0008352 "katanin complex" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0010942 "positive
regulation of cell death" evidence=IEA] [GO:0010976 "positive
regulation of neuron projection development" evidence=IEA]
[GO:0030424 "axon" evidence=IEA] [GO:0030426 "growth cone"
evidence=IEA] [GO:0030496 "midbody" evidence=IEA] [GO:0043025
"neuronal cell body" evidence=IEA] [GO:0045502 "dynein binding"
evidence=IEA] [GO:0051013 "microtubule severing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
InterPro:IPR026962 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005813 GO:GO:0010976 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0030424
GO:GO:0043025 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030426
GO:GO:0010942 GO:GO:0030496 GO:GO:0051013 EMBL:AC018552
EMBL:AC092118 GO:GO:0008352 PANTHER:PTHR19845 HGNC:HGNC:6217
Ensembl:ENST00000562592 Bgee:H3BPK1 Uniprot:H3BPK1
Length = 210
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 507 LKKYPSKLIA-GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565
L K +L+A G D+ + L+ I + P I + G + + SV +N+ +EL
Sbjct: 28 LGKASGRLLATGGDDCRVNLWSI-NKPNCIMSL---TGHTS-----PVESVRLNTPEELI 78
Query: 566 LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625
+A S +I ++D+ + + L+ HK +I + F + + A+ S D ++KLWD+R+
Sbjct: 79 VAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFV-ASGSQDTNIKLWDIRR 136
Query: 626 KPIQPCYTASSSKGNVMVCFSPDDHYL 652
K Y S + FSPD +L
Sbjct: 137 KGCVFRYRGHSQAVRCLR-FSPDGKWL 162
>UNIPROTKB|B4LS78 [details] [associations]
symbol:GJ17641 "Ribosome biogenesis protein WDR12 homolog"
species:7244 "Drosophila virilis" [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISS] [GO:0070545 "PeBoW complex" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:CH940649 GO:GO:0070545 GO:GO:0000463 InterPro:IPR012972
Pfam:PF08154 KO:K14863 OMA:LQTRFFT OrthoDB:EOG4BNZTB HAMAP:MF_03029
RefSeq:XP_002052609.1 ProteinModelPortal:B4LS78 STRING:B4LS78
EnsemblMetazoa:FBtr0233566 GeneID:6629233 KEGG:dvi:Dvir_GJ17641
FlyBase:FBgn0204810 InParanoid:B4LS78 Uniprot:B4LS78
Length = 419
Score = 106 (42.4 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 41/170 (24%), Positives = 73/170 (42%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G S+ + W+ + L+ GS + +LK++D++ + G+ T FD S
Sbjct: 249 GHRESISAVQWMDA--TTLVTGSWDHTLKVWDLQ-----LEGIKTEIST-NKSIFDASYS 300
Query: 556 VHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
++ L + + KN+ LYD N G ++ H + V +SN +F + S
Sbjct: 301 ----KLNRLIVTASADKNLRLYDARTNQGSVVRNTYLGHNAWVQTVMWSNTEEFLFVSGS 356
Query: 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
+D KLWD R P P Y V+ + Y++ G+ ++ V
Sbjct: 357 YDTQNKLWDCRS-PKAPLYDLLGHGEKVLDIDWSNPKYIVSGGADNTVRV 405
Score = 57 (25.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 177 LSMCETRVGNLWTTIAALS-KLPS-LAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNI 234
L+ C N+WT +P A ++ +W+ DD S+ QD Q NI
Sbjct: 119 LTGCYDNTINIWTNKGKHKLTIPGHTAPIKAVDWISMDDENGRFVSTSQDQTAMLWQWNI 178
Query: 235 CSS 237
S+
Sbjct: 179 ASN 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 721 695 0.00081 121 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 624 (66 KB)
Total size of DFA: 392 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.94u 0.11s 57.05t Elapsed: 00:00:03
Total cpu time: 56.95u 0.11s 57.06t Elapsed: 00:00:03
Start: Mon May 20 16:10:45 2013 End: Mon May 20 16:10:48 2013