BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004969
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
R+L K+G ++WP + L S H D R R +HP+ +
Sbjct: 78 VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 137
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
G+ G ++I GA S+ GL + ++ A S G+ +L D +
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 196
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
+I + + T+ S+ V++ + + N+ L +++ G+ L M
Sbjct: 197 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 248
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
HK+ + V + AT+S DQ VK+WDLRQ + + S + + CFSPD
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 650 HYLL 653
LL
Sbjct: 309 ARLL 312
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
R+L K+G ++WP + L S H D R R +HP+ +
Sbjct: 78 VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 137
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
G+ G ++I GA S+ GL + ++ A S G+ +L D +
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 196
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
+I + + T+ S+ V++ + + N+ L +++ G+ L M
Sbjct: 197 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 248
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
HK+ + V + AT+S DQ VK+WDLRQ + + S + + CFSPD
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 650 HYLL 653
LL
Sbjct: 309 ARLL 312
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
R+L K+G ++WP + L S H D R R +HP+ +
Sbjct: 79 VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 138
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
G+ G ++I GA S+ GL + ++ A S G+ +L D +
Sbjct: 139 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 197
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
+I + + T+ S+ V++ + + N+ L +++ G+ L M
Sbjct: 198 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 249
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
HK+ + V + AT+S DQ VK+WDLRQ + + S + + CFSPD
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 650 HYLL 653
LL
Sbjct: 310 ARLL 313
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS-----IRGMHYGAGTVTFDEF 550
G GL W L++ SD+ ++ L+DI P + + G V D
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
L + LF + + + ++D N+ + D H +N + F+ +S I
Sbjct: 237 WHLL------HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
AT S D+ V LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 291 LATGSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILA-SSGT 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS 560
V + W + S + +D+ L ++D R S A T ++ + N
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTA------EVNCLSFNP 285
Query: 561 MDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618
E LA+G + K +AL+D+ N +L F + HK+ I V +S H+ +I A+S D+ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTF-ESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 619 KLWDLRQ 625
+WDL +
Sbjct: 345 NVWDLSK 351
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS-----IRGMHYGAGTVTFDEF 550
G GL W L++ SD+ ++ L+DI P + + G V D
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
L + LF + + + ++D N+ + D H +N + F+ +S I
Sbjct: 237 WHLLH------ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
AT S D+ V LWDLR ++ +T S K + V +SP + +L SGT
Sbjct: 291 LATGSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILA-SSGT 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS 560
V + W + S + +D+ L ++D R S A T ++ + N
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA------EVNCLSFNP 285
Query: 561 MDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618
E LA+G + K +AL+D+ N +L F + HK+ I V +S H+ +I A+S D+ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTF-ESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 619 KLWDLRQ 625
+WDL +
Sbjct: 345 NVWDLSK 351
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G GL W L++ SD+ ++ L+DI +P G A T+ +
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK--EGKVVDAKTIFTGHTAVVED 232
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
V + + E LF + + + ++D N+ + D H +N + F+ +S I AT
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
S D+ V LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 293 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 338
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G V + W + S + +D+ L ++D R S A T ++
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA------EVNC 278
Query: 556 VHVNSMDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
+ N E LA+G + K +AL+D+ N +L F + HK+ I V++S H+ +I A+S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSG 337
Query: 614 FDQDVKLWDLRQ 625
D+ + +WDL +
Sbjct: 338 TDRRLNVWDLSK 349
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
+++GS + S++++D++ GM D +++VH N L ++S Y
Sbjct: 125 IVSGSFDESVRIWDVK------TGMCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
++D SG+ L+ D ++ VKFS + I A ++ D D+KLWD + YT
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKTYT 234
Query: 634 A 634
Sbjct: 235 G 235
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 126
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 127 SGSFDESVRIWDVK 140
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G GL W L++ SD+ ++ L+DI P R + A + +
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI--DAKNIFTGHTAVVED 236
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
V + + E LF + + + ++D N+ + D H +N + F+ +S I AT
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
S D+ V LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 297 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 342
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G V + W + S + +D+ L ++D R+ S A T ++
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA------EVNC 282
Query: 556 VHVNSMDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
+ N E LA+G + K +AL+D+ N +L F + HK+ I V++S H+ +I A+S
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSG 341
Query: 614 FDQDVKLWDLRQ 625
D+ + +WDL +
Sbjct: 342 TDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-----GMHYGAGTVTFDEF 550
G GL W L++ SD+ ++ L+DI P R + G V D
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
L +H + LF + + + ++D N+ + D H +N + F+ +S I
Sbjct: 241 WHL--LH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
AT S D+ V LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 295 LATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 344
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G V + W + S + +D+ L ++D R+ S A T ++
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA------EVNC 284
Query: 556 VHVNSMDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
+ N E LA+G + K +AL+D+ N +L F + HK+ I V++S H+ +I A+S
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSG 343
Query: 614 FDQDVKLWDLRQ 625
D+ + +WDL +
Sbjct: 344 TDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G GL W L++ SD+ ++ L+DI P R + A + +
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI--DAKNIFTGHTAVVED 240
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
V + + E LF + + + ++D N+ + D H +N + F+ +S I AT
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
S D+ V LWDLR ++ ++ S K + V +SP + +L SGT
Sbjct: 301 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 346
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
G V + W + S + +D+ L ++D R+ S A T ++
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA------EVNC 286
Query: 556 VHVNSMDELFLASGYS-KNIALYDI-NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
+ N E LA+G + K +AL+D+ N +L F + HK+ I V++S H+ +I A+S
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSG 345
Query: 614 FDQDVKLWDLRQ 625
D+ + +WDL +
Sbjct: 346 TDRRLHVWDLSK 357
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
+++GS + S++++D++ GM D +++VH N L ++S Y
Sbjct: 125 IVSGSFDESVRIWDVK------TGMCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
++D SG+ L+ D ++ VKFS + I A ++ D +KLWD + YT
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYT 234
Query: 634 A 634
Sbjct: 235 G 235
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 126
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 127 SGSFDESVRIWDVK 140
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+++GS + S++++D++ G T D +++VH N L ++S Y
Sbjct: 144 IVSGSFDESVRIWDVK----------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
++D SG+ L+ D ++ VKFS + I A ++ D +KLWD + Y
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 252
Query: 633 TA 634
T
Sbjct: 253 TG 254
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 145
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 146 SGSFDESVRIWDVK 159
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+++GS + S++++D++ G T D +++VH N L ++S Y
Sbjct: 146 IVSGSFDESVRIWDVK----------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
++D SG+ L+ D ++ VKFS + I A ++ D +KLWD + Y
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 254
Query: 633 TA 634
T
Sbjct: 255 TG 256
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 147
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 148 SGSFDESVRIWDVK 161
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 209 -ATLDNTLKLWDYSKGKCLKTYTG 231
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 122
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 123 SGSFDESVRIWDVK 136
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+++GS + S++++D++ G T D +++VH N L ++S Y
Sbjct: 128 IVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
++D SG+ L+ D ++ VKFS + I A ++ D +KLWD + Y
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 236
Query: 633 TA 634
T
Sbjct: 237 TG 238
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 129
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 130 SGSFDESVRIWDVK 143
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 126
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 127 SGSFDESVRIWDVK 140
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 227 -ATLDNTLKLWDYSKGKCLKTYTG 249
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 140
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 141 SGSFDESVRIWDVK 154
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 216 -ATLDNTLKLWDYSKGKCLKTYTG 238
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 129
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 130 SGSFDESVRIWDVK 143
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 126
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 127 SGSFDESVRIWDVK 140
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 126
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 127 SGSFDESVRIWDVK 140
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 215 -ATLDNTLKLWDYSKGKCLKTYTG 237
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 128
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 129 SGSFDESVRIWDVK 142
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 216 -ATLDNTLKLWDYSKGKCLKTYTG 238
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 129
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 130 SGSFDESVRIWDVK 143
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 211 -ATLDNTLKLWDYSKGKCLKTYTG 233
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 124
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 125 SGSFDESVRIWDVK 138
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 210 -ATLDNTLKLWDYSKGKCLKTYTG 232
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 123
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 124 SGSFDESVRIWDVK 137
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
D +++VH N L ++S Y ++D SG+ L+ D ++ VKFS + I A
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
++ D +KLWD + YT
Sbjct: 206 -ATLDNTLKLWDYSKGKCLKTYTG 228
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 119
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 120 SGSFDESVRIWDVK 133
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+++GS + S++++D++ G T D +++VH N L ++S Y
Sbjct: 122 IVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
++D SG+ L+ D ++ VKFS + I A ++ D +KLWD + Y
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 230
Query: 633 TA 634
T
Sbjct: 231 TG 232
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFA 610
++ V +S L +++ K + ++D++SG+ L+ K H N V N +P ++
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNLIV 123
Query: 611 TSSFDQDVKLWDLR 624
+ SFD+ V++WD++
Sbjct: 124 SGSFDESVRIWDVK 137
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 507 LKKYPS--KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564
L +PS KL++GS + +++++D+R G ++T D +T+V V+ D
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRT----------GQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 565 FLASG-YSKNIALYDINSGRRLQVF------ADMHKEHINVVKFSNHSPSIFATSSFDQD 617
++A+G + + ++D +G ++ HK+ + V F+ S+ + S D+
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRS 279
Query: 618 VKLWDLRQ 625
VKLW+L+
Sbjct: 280 VKLWNLQN 287
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+I GSD+ +++++ + G V F+ D + S+ V+ L+
Sbjct: 70 IIVGSDDFRIRVFN----------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
+ L++ + L+ + H+ + V F+ PS FA+ D+ VK+W L Q
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 633 TASSSKGNVMVCFS--PDDHYLL 653
T +G V + PD Y++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI 202
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+I GSD+ +++++ + G V F+ D + S+ V+ L+
Sbjct: 70 IIVGSDDFRIRVFN----------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
+ L++ + L+ + H+ + V F+ PS FA+ D+ VK+W L Q
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 633 TASSSKGNVMVCFS--PDDHYLL 653
T +G V + PD Y++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI 202
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 455 RPRQFEYHPSISCLMVFGTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKL 514
R E+HP+ + G+ G S+I G +++ G+ + + ++L
Sbjct: 74 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL 133
Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574
S G+ L D S + A T ++D + V S+ LA+G S
Sbjct: 134 FVSSIRGATTLRDF-----SGSVIQVFAKTDSWDYWYCCVDV---SVSRQMLATGDSTGR 185
Query: 575 ALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
L G ++F + +HK + +F+ + ATSS D VKLWDLR + Y
Sbjct: 186 LLLLGLDGH--EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 243
Query: 634 A 634
A
Sbjct: 244 A 244
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 455 RPRQFEYHPSISCLMVFGTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKL 514
R E+HP+ + G+ G S+I G +++ G+ + + ++L
Sbjct: 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL 134
Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574
S G+ L D S + A T ++D + V S+ LA+G S
Sbjct: 135 FVSSIRGATTLRDF-----SGSVIQVFAKTDSWDYWYCCVDV---SVSRQMLATGDSTGR 186
Query: 575 ALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
L G ++F + +HK + +F+ + ATSS D VKLWDLR + Y
Sbjct: 187 LLLLGLDGH--EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244
Query: 634 A 634
A
Sbjct: 245 A 245
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+I GSD+ +++++ + G V F+ D + S+ V+ L+
Sbjct: 70 IIVGSDDFRIRVFN----------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
+ L++ + L+ + H+ + V F+ PS FA+ D+ VK+W L Q
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 633 TASSSKGNVMVCFS--PDDHYLL 653
T +G V + PD Y++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI 202
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
+I GSD+ +++++ + G V F+ D + S+ V+ L+
Sbjct: 70 IIVGSDDFRIRVFN----------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
+ L++ + L+ + H+ + V F+ PS FA+ D+ VK+W L Q
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 633 TASSSKGNVMVCFS--PDDHYLL 653
T +G V + PD Y++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI 202
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-------- 625
+ L D+ SG + H++ I V +S I AT+S D VKLWD+R+
Sbjct: 168 VQLCDLKSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226
Query: 626 --------KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSM 661
+ ++ TA + K N + CF+ D +LL G+ M
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGL-CFTSDGLHLLTVGTDNRM 269
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 558 VNSMD------ELFLASGYSKNIALYDINSGRRLQVFA------------DMHKEHINVV 599
+N++D L+ G I LYD+ + R + D+H+ + V
Sbjct: 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV 105
Query: 600 KFSNHSPSIFATSSFDQDVKLWD 622
++ H +F +SSFD+ +K+WD
Sbjct: 106 QWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT---FDEFDQLTSVHVNSMDELFLASGYS 571
++GS +G+L+L+D+ GT T + SV +S + ++
Sbjct: 79 LSGSWDGTLRLWDLT------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQP 630
K I L++ + V + H E ++ V+FS N S I + +D+ VK+W+L ++
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Query: 631 CYTASSSKGNVMVCFSPD 648
+ + N V SPD
Sbjct: 187 NHIGHTGYLNT-VTVSPD 203
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT---FDEFDQLTSVHVNSMDELFLASGYS 571
++GS +G+L+L+D+ GT T + SV +S + ++
Sbjct: 102 LSGSWDGTLRLWDLT------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQP 630
K I L++ + V + H E ++ V+FS N S I + +D+ VK+W+L ++
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209
Query: 631 CYTASSSKGNVMVCFSPD 648
+ + N V SPD
Sbjct: 210 NHIGHTGYLNT-VTVSPD 226
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 31/145 (21%)
Query: 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-S 555
AMNSV + P ++I+GSD+ ++ +++ PP + + TF E + S
Sbjct: 149 AMNSV---DFKPSRPFRIISGSDDNTVAIFE---GPP----FKFKS---TFGEHTKFVHS 195
Query: 556 VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF------ 609
V N LF ++G I LY+ G + VF D + +K HS S+F
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED------DSLKNVAHSGSVFGLTWSP 249
Query: 610 -----ATSSFDQDVKLWDLRQKPIQ 629
A++S D+ +K+W++ ++
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVE 274
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 565 FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK----FSNHSPSIFATSSFDQDVKL 620
L + S + L++I L V EH ++VK FS+ + ++ F VK+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS--VKV 165
Query: 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILA 680
WDL QK + Y A SS+ N + D L G + + R P + A
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCA 224
Query: 681 AYTRPSS 687
+ T P+S
Sbjct: 225 SDTIPTS 231
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 366 KTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 422
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPDD +
Sbjct: 423 TGHSSSVWG--VAFSPDDQTI 441
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 562 DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW 621
D+ ++ K + L++ N G+ LQ H + V FS +I A++S D+ VKLW
Sbjct: 438 DQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTI-ASASDDKTVKLW 494
Query: 622 DLRQKPIQPCYTASSS-KGNVMVCFSPDDHYL 652
+ + +Q SSS +G V FSPD +
Sbjct: 495 NRNGQLLQTLTGHSSSVRG---VAFSPDGQTI 523
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H +N V F +I A++S D+ VKLW+ + +Q
Sbjct: 243 KTVKLWNRN-GQLLQTLTG-HSSSVNGVAFRPDGQTI-ASASDDKTVKLWNRNGQLLQTL 299
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPD +
Sbjct: 300 TGHSSSVWG--VAFSPDGQTI 318
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 325 KTVKLWNRN-GQHLQTLTG-HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 381
Query: 632 YTASSS-KGNVMVCFSPDDHYL 652
SSS +G V FSPD +
Sbjct: 382 TGHSSSVRG---VAFSPDGQTI 400
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 79 KTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 135
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPD +
Sbjct: 136 TGHSSSVWG--VAFSPDGQTI 154
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 489 KTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 545
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPD +
Sbjct: 546 TGHSSSVWG--VAFSPDGQTI 564
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 38 KTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 94
Query: 632 YTASSS-KGNVMVCFSPDDHYL 652
SSS +G V FSPD +
Sbjct: 95 TGHSSSVRG---VAFSPDGQTI 113
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 161 KTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 217
Query: 632 YTASSS-KGNVMVCFSPDDHYL 652
SSS +G V FSPD +
Sbjct: 218 TGHSSSVRG---VAFSPDGQTI 236
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 284 KTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQHLQTL 340
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPD +
Sbjct: 341 TGHSSSVWG--VAFSPDGQTI 359
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 407 KTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQLLQTL 463
Query: 632 YTASSS-KGNVMVCFSPDDHYL 652
SSS +G V FSPD +
Sbjct: 464 TGHSSSVRG---VAFSPDGQTI 482
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 120 KTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 176
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V FSPD +
Sbjct: 177 TGHSSSVWG--VAFSPDGQTI 195
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631
K + L++ N G+ LQ H + V FS +I A++S D+ VKLW+ + +Q
Sbjct: 202 KTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTL 258
Query: 632 YTASSSKGNVMVCFSPDDHYL 652
SSS V F PD +
Sbjct: 259 TGHSSSVNG--VAFRPDGQTI 277
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 507 LKKYPS--KLIAGSDNGSLKLYDIRHMPP----SIRGMHYGAGTVTFDEFDQLTSVHVNS 560
++ YPS +GSD+ + +LYD+R S + +GA +V F S
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF------------S 293
Query: 561 MDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
+ L +GY+ I ++D+ G R+ + H+ ++ ++ S + F + S+D ++
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFG-HENRVSTLRVSPDGTA-FCSGSWDHTLR 351
Query: 620 LW 621
+W
Sbjct: 352 VW 353
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 558 VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617
NS ++ ASG AL+D+ SG+ LQ F + + + + + + F + D+
Sbjct: 163 TNSDMQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 618 VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD 669
+WD+R + S N + + D + G T LR D
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD-LRAD 272
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 321 SLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERA 365
SL Y+ +P+ +KHYR Y+I +P+++ LD ++ +R+ A
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
+++GS + S++++D+ G T LTS + D + ++
Sbjct: 292 VVSGSLDTSIRVWDVE----------TGNCIHTLTGHQSLTS-GMELKDNILVSGNADST 340
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624
+ ++DI +G+ LQ +K H + V + + TSS D VKLWDL+
Sbjct: 341 VKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 563 ELFLASGYSKNIALYDINSGRRLQVFADM----HKEHINVVKFSNHSPSIFATSSFDQDV 618
L SG + L+D+ +G+R+ +F H + + ++ + ++F + S D V
Sbjct: 172 RLITGSG-DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 619 KLWDLR 624
+LWDLR
Sbjct: 231 RLWDLR 236
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 517 GSDNG-SLKLYDIRHMPPSIRGMHYG--AGTVTFDEFDQLTSVHVNSMDE-LFLASGYSK 572
GSDN S+ ++D+R+ ++ ++ G G ++ D Q DE L L+SG
Sbjct: 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ---------DEHLLLSSGRDN 285
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620
+ L++ S +L F KF+ +P +FA +SFD +++
Sbjct: 286 TVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 516 AGSDNGSLKLYDIRHMPPSIR---GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK 572
AG DNG +KL+D+R+M ++R + G ++ FD D SM++L +A+
Sbjct: 185 AGYDNGDIKLFDLRNM--ALRWETNIKNGVCSLEFDRKDI-------SMNKL-VATSLEG 234
Query: 573 NIALYDINSGRRLQVFADM-HKEHINVVKFSNHSP---SIFATSSFDQDVKLWDLRQKPI 628
++D+ + + FA + K H + V H P +F T+ + LW + PI
Sbjct: 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY-EYPI 293
Query: 629 Q 629
Q
Sbjct: 294 Q 294
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDI 579
G ++LY+I+H + A + F S+ + +LA+G + N+ ++++
Sbjct: 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFG------ATSLQQRYLATGDFGGNLHIWNL 97
Query: 580 NSGRRLQVFADMHKEHINVVKFSNH------SPSIFATSSFDQDVKLWDLRQK 626
+ HKE IN + +P I T S D VK+WD RQK
Sbjct: 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI-VTGSRDGTVKVWDPRQK 149
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
LI G + +L ++D+ P I+ + + ++ ++ ++ + N
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-------ALAISPDSKVCFSCCSDGN 164
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625
IA++D+++ ++ F H + + + SN ++ T D V+ WDLR+
Sbjct: 165 IAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLW-TGGLDNTVRSWDLRE 214
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628
G K + ++ +G +L + H++ + FS+ S AT S D+ VK+WD +
Sbjct: 634 GADKTLQVFKAETGEKL-LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKL 691
Query: 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS 657
Y S + N + +H LL GS
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 546 TFDEF-DQLTSVH-VNSMDELFLASGYSKN-IALYDINSGR-RLQVFADMHKEHINVVKF 601
T+DE +Q+ H N + L LA+G + + L+D+N R +F H N V
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-----HTNSVNH 748
Query: 602 SNHSP--SIFATSSFDQDVKLWDLR 624
SP + A+ S D ++LWD+R
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVR 773
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628
G K + ++ +G +L + H++ + FS+ S AT S D+ VK+WD +
Sbjct: 641 GADKTLQVFKAETGEKL-LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKL 698
Query: 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS 657
Y S + N + +H LL GS
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 546 TFDEF-DQLTSVH-VNSMDELFLASGYSKN-IALYDINSGR-RLQVFADMHKEHINVVKF 601
T+DE +Q+ H N + L LA+G + + L+D+N R +F H N V
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-----HTNSVNH 755
Query: 602 SNHSP--SIFATSSFDQDVKLWDLR 624
SP + A+ S D ++LWD+R
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVR 780
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD 669
+SS+D+ ++LWDLR + S+ V FSPD+ +L G+ + + ++ G+
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILGE 150
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS 560
V L W+ + ++ SD+G+++L+++ I ++ D +++V V S
Sbjct: 85 VADLTWVGER--GILVASDSGAVELWELDENETLIVSKF-----CKYEHDDIVSTVSVLS 137
Query: 561 MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620
++ I ++D+ L + H + V S H S+F + S D + L
Sbjct: 138 SGTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 621 WDLR 624
WD R
Sbjct: 197 WDTR 200
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667
+F + + D KLWD+R+ + +T S N +CF P+ + + + LR
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLR 256
Query: 668 GD 669
D
Sbjct: 257 AD 258
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667
+F + + D KLWD+R+ + +T S N +CF P+ + + + LR
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLR 256
Query: 668 GD 669
D
Sbjct: 257 AD 258
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667
+F + + D KLWD+R+ + +T S N +CF P+ + + + LR
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLR 256
Query: 668 GD 669
D
Sbjct: 257 AD 258
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667
+F + + D KLWD+R+ + +T S N +CF P+ + + + LR
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLR 256
Query: 668 GD 669
D
Sbjct: 257 AD 258
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667
+F + + D KLWD+R+ + +T S N +CF P+ + + + LR
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLR 267
Query: 668 GD 669
D
Sbjct: 268 AD 269
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628
G K + ++ +G +L + H++ + FS I AT S D+ VK+W+ +
Sbjct: 640 GADKTLQVFKAETGEKL-LEIKAHEDEVLCCAFSTDDRFI-ATCSVDKKVKIWNSMTGEL 697
Query: 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS 657
Y S + N + H LL GS
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 19 HDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
H +LP AI SG+ +R N+P L +L Y + D+ P
Sbjct: 807 HRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIP 848
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 19 HDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
H +LP AI SG+ +R N+P L +L Y + D+ P
Sbjct: 809 HRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIP 850
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,576,030
Number of Sequences: 62578
Number of extensions: 814549
Number of successful extensions: 1878
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 123
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)