Query 004969
Match_columns 721
No_of_seqs 573 out of 3671
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.1E-31 1.8E-35 270.9 23.9 228 455-704 117-431 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-31 6E-36 277.7 20.2 228 454-703 176-409 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-31 1.2E-35 275.5 19.1 226 455-703 219-451 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.8E-29 3.8E-34 261.0 20.5 225 455-703 159-472 (480)
5 KOG0286 G-protein beta subunit 100.0 4.4E-27 9.5E-32 236.7 27.7 228 455-703 57-336 (343)
6 KOG0263 Transcription initiati 100.0 5.3E-28 1.2E-32 269.9 22.7 225 455-704 380-641 (707)
7 KOG0263 Transcription initiati 100.0 2.8E-27 6E-32 264.2 23.6 196 455-667 453-649 (707)
8 KOG0284 Polyadenylation factor 100.0 4.9E-28 1.1E-32 252.4 14.8 238 454-716 139-383 (464)
9 KOG0279 G protein beta subunit 100.0 3E-26 6.5E-31 229.6 25.6 225 455-703 65-304 (315)
10 KOG0268 Sof1-like rRNA process 99.9 2.7E-28 5.8E-33 251.1 9.9 266 401-703 22-293 (433)
11 KOG0273 Beta-transducin family 99.9 2.9E-26 6.3E-31 242.8 23.8 225 455-687 237-505 (524)
12 KOG0284 Polyadenylation factor 99.9 3.8E-27 8.2E-32 245.8 14.3 226 455-703 98-328 (464)
13 KOG0279 G protein beta subunit 99.9 3.6E-25 7.9E-30 221.8 26.1 218 455-687 17-245 (315)
14 KOG0291 WD40-repeat-containing 99.9 3.6E-25 7.8E-30 244.9 28.0 232 454-709 351-609 (893)
15 KOG0282 mRNA splicing factor [ 99.9 1.5E-26 3.3E-31 245.9 15.6 228 455-703 216-496 (503)
16 KOG0265 U5 snRNP-specific prot 99.9 4E-25 8.8E-30 223.3 21.9 227 455-703 92-329 (338)
17 KOG0315 G-protein beta subunit 99.9 1.7E-24 3.6E-29 213.8 23.3 226 455-703 42-279 (311)
18 KOG0285 Pleiotropic regulator 99.9 1.4E-24 3.1E-29 223.2 21.5 215 455-687 153-372 (460)
19 KOG0266 WD40 repeat-containing 99.9 6.2E-24 1.4E-28 239.9 27.6 228 455-703 161-400 (456)
20 KOG0645 WD40 repeat protein [G 99.9 3.4E-23 7.3E-28 206.9 29.2 235 455-710 16-259 (312)
21 KOG0276 Vesicle coat complex C 99.9 3.7E-24 8E-29 232.7 24.1 225 455-703 15-248 (794)
22 KOG0266 WD40 repeat-containing 99.9 9.8E-24 2.1E-28 238.4 28.7 228 454-703 204-443 (456)
23 KOG0295 WD40 repeat-containing 99.9 3.5E-24 7.6E-29 221.1 20.8 230 453-703 108-397 (406)
24 KOG0319 WD40-repeat-containing 99.9 4E-24 8.7E-29 236.7 22.5 244 442-704 361-611 (775)
25 PLN00181 protein SPA1-RELATED; 99.9 4.1E-23 8.8E-28 248.8 33.2 227 455-703 534-784 (793)
26 PTZ00421 coronin; Provisional 99.9 8.2E-23 1.8E-27 231.4 31.1 220 455-689 77-317 (493)
27 KOG0265 U5 snRNP-specific prot 99.9 1.4E-23 3E-28 212.3 21.7 225 455-703 49-287 (338)
28 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.5E-27 231.7 31.8 221 455-689 76-320 (568)
29 KOG0315 G-protein beta subunit 99.9 5.1E-23 1.1E-27 203.4 24.5 217 465-703 9-236 (311)
30 KOG0318 WD40 repeat stress pro 99.9 1E-22 2.2E-27 218.3 28.8 242 455-706 192-554 (603)
31 cd00200 WD40 WD40 domain, foun 99.9 3.3E-22 7.2E-27 204.1 31.5 224 455-702 11-239 (289)
32 KOG0292 Vesicle coat complex C 99.9 1.9E-23 4E-28 234.1 21.1 228 454-703 10-271 (1202)
33 KOG0292 Vesicle coat complex C 99.9 2.9E-23 6.4E-28 232.5 22.6 227 455-703 53-313 (1202)
34 KOG0273 Beta-transducin family 99.9 6.3E-23 1.4E-27 217.6 22.3 227 455-703 180-473 (524)
35 PLN00181 protein SPA1-RELATED; 99.9 3.6E-22 7.7E-27 240.7 32.0 227 453-703 483-729 (793)
36 cd00200 WD40 WD40 domain, foun 99.9 1.1E-21 2.5E-26 200.2 29.9 224 455-703 53-282 (289)
37 KOG0281 Beta-TrCP (transducin 99.9 9.5E-24 2.1E-28 216.1 14.1 207 455-685 239-459 (499)
38 KOG0286 G-protein beta subunit 99.9 1.7E-22 3.7E-27 203.7 22.7 196 453-665 145-343 (343)
39 KOG0291 WD40-repeat-containing 99.9 2.9E-22 6.2E-27 222.1 26.5 216 455-687 309-532 (893)
40 KOG0277 Peroxisomal targeting 99.9 1.1E-22 2.3E-27 201.7 20.7 230 457-703 12-256 (311)
41 KOG1407 WD40 repeat protein [F 99.9 1.3E-22 2.8E-27 201.8 20.7 237 455-703 22-293 (313)
42 KOG0645 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 196.2 26.7 226 452-703 60-302 (312)
43 KOG0276 Vesicle coat complex C 99.9 3.5E-22 7.5E-27 217.5 24.6 227 454-703 56-290 (794)
44 KOG0285 Pleiotropic regulator 99.9 5.1E-23 1.1E-27 211.8 16.2 187 496-703 149-340 (460)
45 KOG0277 Peroxisomal targeting 99.9 2.1E-22 4.5E-27 199.7 18.0 228 456-703 63-300 (311)
46 KOG0275 Conserved WD40 repeat- 99.9 7.2E-23 1.6E-27 207.9 14.4 224 455-690 215-452 (508)
47 KOG0295 WD40 repeat-containing 99.9 8.1E-22 1.7E-26 203.8 22.4 203 456-666 196-405 (406)
48 KOG0264 Nucleosome remodeling 99.9 4.9E-22 1.1E-26 210.8 20.9 230 455-688 126-386 (422)
49 PTZ00421 coronin; Provisional 99.9 7.1E-21 1.5E-25 215.6 31.6 228 459-701 26-278 (493)
50 PTZ00420 coronin; Provisional 99.9 1E-20 2.2E-25 215.8 32.0 218 472-704 50-285 (568)
51 KOG0316 Conserved WD40 repeat- 99.9 2.6E-21 5.7E-26 189.9 22.3 212 455-687 19-282 (307)
52 KOG0283 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 219.7 23.1 234 454-712 268-574 (712)
53 KOG0296 Angio-associated migra 99.9 1.1E-20 2.4E-25 195.5 26.1 157 455-627 66-223 (399)
54 KOG0640 mRNA cleavage stimulat 99.9 1.7E-21 3.6E-26 197.4 19.6 201 455-667 114-335 (430)
55 KOG0313 Microtubule binding pr 99.9 4.8E-21 1E-25 199.0 22.9 219 466-703 115-367 (423)
56 KOG0305 Anaphase promoting com 99.9 3.9E-21 8.5E-26 211.9 23.6 236 455-715 219-462 (484)
57 KOG0289 mRNA splicing factor [ 99.9 5.9E-21 1.3E-25 200.9 22.5 224 456-702 222-452 (506)
58 KOG0281 Beta-TrCP (transducin 99.9 2.6E-22 5.7E-27 205.6 11.9 205 455-686 199-411 (499)
59 KOG0772 Uncharacterized conser 99.9 2.2E-21 4.8E-26 207.4 18.9 227 455-687 169-469 (641)
60 KOG0310 Conserved WD40 repeat- 99.9 4.2E-21 9.1E-26 205.0 20.2 222 455-693 70-297 (487)
61 KOG1539 WD repeat protein [Gen 99.9 1.8E-21 3.9E-26 218.1 17.8 235 415-667 406-648 (910)
62 KOG1446 Histone H3 (Lys4) meth 99.9 6.1E-20 1.3E-24 187.6 27.1 236 455-711 16-304 (311)
63 KOG0313 Microtubule binding pr 99.9 1.5E-20 3.3E-25 195.3 22.8 243 455-710 146-416 (423)
64 KOG0647 mRNA export protein (c 99.9 2.6E-20 5.7E-25 188.7 23.8 235 455-711 29-320 (347)
65 KOG0289 mRNA splicing factor [ 99.9 2E-20 4.3E-25 197.0 23.6 231 452-703 260-497 (506)
66 KOG0643 Translation initiation 99.9 5.3E-20 1.1E-24 183.8 24.7 216 455-687 12-243 (327)
67 KOG0293 WD40 repeat-containing 99.9 1E-20 2.2E-25 197.9 20.0 231 455-705 226-506 (519)
68 KOG1332 Vesicle coat complex C 99.9 1.5E-20 3.2E-25 185.7 18.9 225 465-705 22-279 (299)
69 KOG0288 WD40 repeat protein Ti 99.9 6E-21 1.3E-25 199.9 16.8 223 455-703 221-452 (459)
70 KOG0319 WD40-repeat-containing 99.9 9.5E-21 2.1E-25 210.2 18.7 198 454-665 412-617 (775)
71 KOG4283 Transcription-coupled 99.9 1.9E-20 4.1E-25 188.9 18.8 202 455-667 45-276 (397)
72 KOG0269 WD40 repeat-containing 99.9 4.2E-21 9.2E-26 213.7 15.5 230 455-703 89-331 (839)
73 KOG0264 Nucleosome remodeling 99.9 2.9E-20 6.3E-25 197.3 20.2 219 435-668 166-405 (422)
74 KOG0973 Histone transcription 99.8 5.2E-20 1.1E-24 212.4 23.1 236 455-703 15-346 (942)
75 KOG0306 WD40-repeat-containing 99.8 1.1E-19 2.3E-24 201.9 22.9 229 456-703 415-655 (888)
76 KOG0310 Conserved WD40 repeat- 99.8 1.5E-19 3.3E-24 193.1 23.3 199 452-666 109-308 (487)
77 KOG0275 Conserved WD40 repeat- 99.8 1.2E-20 2.6E-25 191.9 13.9 230 454-703 264-500 (508)
78 KOG0283 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 204.9 22.1 197 455-667 371-576 (712)
79 KOG0274 Cdc4 and related F-box 99.8 2.4E-19 5.3E-24 203.9 24.6 206 455-684 251-463 (537)
80 KOG0318 WD40 repeat stress pro 99.8 1.5E-18 3.3E-23 186.5 28.6 239 455-705 61-343 (603)
81 KOG4328 WD40 protein [Function 99.8 9.8E-20 2.1E-24 193.0 18.9 237 451-703 184-441 (498)
82 KOG0316 Conserved WD40 repeat- 99.8 1.9E-19 4.1E-24 176.9 19.4 178 496-688 15-196 (307)
83 KOG0641 WD40 repeat protein [G 99.8 2.5E-18 5.3E-23 167.9 27.0 226 455-687 34-331 (350)
84 KOG0274 Cdc4 and related F-box 99.8 4.3E-19 9.2E-24 201.9 24.0 190 456-669 211-402 (537)
85 KOG0278 Serine/threonine kinas 99.8 4E-20 8.7E-25 182.9 13.5 223 455-703 61-288 (334)
86 KOG0299 U3 snoRNP-associated p 99.8 6.3E-19 1.4E-23 187.2 21.9 218 454-688 203-438 (479)
87 KOG0308 Conserved WD40 repeat- 99.8 9.3E-20 2E-24 199.8 15.9 226 458-703 29-276 (735)
88 KOG0278 Serine/threonine kinas 99.8 1.1E-19 2.5E-24 179.7 14.9 194 455-667 102-297 (334)
89 KOG0282 mRNA splicing factor [ 99.8 7.7E-20 1.7E-24 195.1 13.5 166 488-667 206-372 (503)
90 KOG0646 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 185.1 21.4 225 455-687 83-331 (476)
91 KOG0300 WD40 repeat-containing 99.8 6.3E-19 1.4E-23 179.1 17.8 232 441-687 143-410 (481)
92 KOG0643 Translation initiation 99.8 4.8E-18 1E-22 169.8 23.7 233 453-703 52-308 (327)
93 KOG0269 WD40 repeat-containing 99.8 2.1E-19 4.6E-24 200.3 15.7 200 452-664 132-337 (839)
94 KOG0293 WD40 repeat-containing 99.8 3.1E-19 6.8E-24 186.8 15.7 207 455-667 271-513 (519)
95 KOG1036 Mitotic spindle checkp 99.8 6.9E-18 1.5E-22 171.9 24.7 226 455-708 15-300 (323)
96 KOG0302 Ribosome Assembly prot 99.8 8E-19 1.7E-23 182.3 16.9 196 457-660 215-432 (440)
97 KOG0294 WD40 repeat-containing 99.8 3.9E-18 8.4E-23 173.9 20.6 197 455-669 45-283 (362)
98 KOG0270 WD40 repeat-containing 99.8 1.9E-18 4.2E-23 182.8 17.7 201 455-667 245-449 (463)
99 KOG0308 Conserved WD40 repeat- 99.8 1.1E-18 2.3E-23 191.6 16.1 206 456-668 76-286 (735)
100 KOG0296 Angio-associated migra 99.8 3.7E-17 8E-22 169.6 24.6 196 455-667 108-398 (399)
101 KOG0302 Ribosome Assembly prot 99.8 4.6E-18 9.9E-23 176.7 17.9 194 465-667 164-378 (440)
102 KOG0306 WD40-repeat-containing 99.8 2.1E-17 4.6E-22 183.7 24.1 235 437-706 364-616 (888)
103 KOG1407 WD40 repeat protein [F 99.8 6.7E-18 1.5E-22 168.4 17.2 191 495-703 17-252 (313)
104 KOG2055 WD40 repeat protein [G 99.8 1.9E-17 4.2E-22 175.8 21.6 234 455-708 215-461 (514)
105 KOG0267 Microtubule severing p 99.8 5.4E-19 1.2E-23 195.7 10.0 217 455-688 30-251 (825)
106 KOG0640 mRNA cleavage stimulat 99.8 4.6E-18 1E-22 172.6 15.6 226 455-689 174-410 (430)
107 KOG0639 Transducin-like enhanc 99.8 5.7E-18 1.2E-22 180.8 16.9 227 456-703 422-654 (705)
108 KOG4378 Nuclear protein COP1 [ 99.8 8.5E-18 1.8E-22 179.3 17.9 205 467-686 92-304 (673)
109 KOG0301 Phospholipase A2-activ 99.8 1.1E-17 2.4E-22 184.9 19.4 208 456-687 61-271 (745)
110 KOG1273 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 170.4 17.9 233 456-700 26-311 (405)
111 KOG0299 U3 snoRNP-associated p 99.8 2.4E-17 5.2E-22 175.2 20.3 226 454-703 143-401 (479)
112 KOG1332 Vesicle coat complex C 99.8 1.4E-17 3E-22 164.7 16.5 206 455-667 58-286 (299)
113 KOG0641 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 153.7 25.0 204 455-667 91-349 (350)
114 KOG0300 WD40 repeat-containing 99.8 2.1E-17 4.5E-22 168.1 18.0 219 454-687 191-456 (481)
115 KOG0270 WD40 repeat-containing 99.8 2.6E-17 5.6E-22 174.4 18.1 220 455-687 175-430 (463)
116 KOG0305 Anaphase promoting com 99.7 4E-17 8.7E-22 180.4 19.9 199 452-668 259-462 (484)
117 KOG0303 Actin-binding protein 99.7 7.1E-17 1.5E-21 168.7 20.4 224 450-687 78-321 (472)
118 KOG0973 Histone transcription 99.7 9E-17 1.9E-21 185.9 23.1 198 454-667 70-355 (942)
119 KOG1408 WD40 repeat protein [F 99.7 4.4E-17 9.6E-22 179.7 18.3 208 454-667 460-713 (1080)
120 KOG0267 Microtubule severing p 99.7 2.3E-18 5E-23 190.8 8.1 187 455-659 72-260 (825)
121 KOG1274 WD40 repeat protein [G 99.7 2.6E-16 5.5E-21 178.9 24.3 218 455-688 58-283 (933)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.4E-15 3.1E-20 159.7 28.1 222 456-701 33-267 (300)
123 KOG2096 WD40 repeat protein [G 99.7 4.1E-16 8.9E-21 159.2 22.6 238 455-703 88-352 (420)
124 KOG2445 Nuclear pore complex c 99.7 1E-15 2.3E-20 155.9 25.2 240 455-703 15-309 (361)
125 KOG0288 WD40 repeat protein Ti 99.7 1.2E-17 2.5E-22 175.5 11.4 222 455-703 177-408 (459)
126 KOG2919 Guanine nucleotide-bin 99.7 1E-16 2.3E-21 163.9 17.4 224 465-703 122-361 (406)
127 KOG0321 WD40 repeat-containing 99.7 1.8E-16 3.8E-21 174.0 20.0 230 455-687 102-372 (720)
128 KOG0639 Transducin-like enhanc 99.7 5.1E-17 1.1E-21 173.5 15.1 227 452-703 464-695 (705)
129 KOG0268 Sof1-like rRNA process 99.7 2.1E-17 4.6E-22 171.0 10.9 193 458-667 152-345 (433)
130 KOG1274 WD40 repeat protein [G 99.7 1.4E-15 2.9E-20 173.1 25.5 224 456-703 16-253 (933)
131 KOG0650 WD40 repeat nucleolar 99.7 4.5E-16 9.7E-21 169.6 20.7 247 434-703 388-671 (733)
132 KOG0772 Uncharacterized conser 99.7 2.1E-16 4.5E-21 169.7 17.8 199 493-703 162-385 (641)
133 KOG1007 WD repeat protein TSSC 99.7 4.2E-16 9.2E-21 157.4 18.9 227 455-688 65-343 (370)
134 KOG0294 WD40 repeat-containing 99.7 2E-15 4.3E-20 154.3 23.4 212 469-703 4-272 (362)
135 KOG2106 Uncharacterized conser 99.7 3.5E-15 7.7E-20 160.0 26.4 228 455-703 248-512 (626)
136 KOG0647 mRNA export protein (c 99.7 6E-16 1.3E-20 157.3 19.5 192 496-703 25-272 (347)
137 KOG0307 Vesicle coat complex C 99.7 4.8E-17 1E-21 188.8 12.5 222 455-688 66-309 (1049)
138 KOG2048 WD40 repeat protein [G 99.7 9.9E-15 2.2E-19 161.6 28.0 226 455-703 27-266 (691)
139 KOG1539 WD repeat protein [Gen 99.7 4.7E-15 1E-19 167.0 25.4 239 455-703 246-638 (910)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.8E-14 3.8E-19 151.4 27.9 203 467-688 2-219 (300)
141 KOG1446 Histone H3 (Lys4) meth 99.7 8.1E-15 1.8E-19 150.3 23.5 181 497-692 13-204 (311)
142 KOG4227 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 155.8 20.1 158 456-626 59-227 (609)
143 KOG0301 Phospholipase A2-activ 99.7 2.6E-15 5.6E-20 166.3 20.1 219 456-703 17-240 (745)
144 KOG2055 WD40 repeat protein [G 99.7 1.8E-14 4E-19 153.4 25.3 233 454-706 258-506 (514)
145 KOG1036 Mitotic spindle checkp 99.7 4.4E-15 9.6E-20 151.6 19.5 182 454-657 55-294 (323)
146 KOG0307 Vesicle coat complex C 99.7 2.8E-16 6E-21 182.5 11.8 208 452-669 115-329 (1049)
147 KOG0649 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 143.8 20.5 223 456-686 13-257 (325)
148 KOG1188 WD40 repeat protein [G 99.6 3.9E-15 8.5E-20 153.6 17.2 191 467-667 41-242 (376)
149 KOG4283 Transcription-coupled 99.6 5.3E-15 1.1E-19 149.8 17.0 197 496-703 41-267 (397)
150 KOG0290 Conserved WD40 repeat- 99.6 1.2E-14 2.6E-19 147.1 19.4 237 452-703 95-357 (364)
151 KOG4328 WD40 protein [Function 99.6 5.4E-15 1.2E-19 157.3 17.4 234 451-703 232-485 (498)
152 PF14580 LRR_9: Leucine-rich r 99.6 4.8E-17 1E-21 159.5 1.4 148 100-373 19-166 (175)
153 KOG1587 Cytoplasmic dynein int 99.6 1E-14 2.2E-19 165.4 19.5 212 454-667 243-516 (555)
154 KOG1517 Guanine nucleotide bin 99.6 2.7E-14 5.9E-19 163.8 22.1 243 443-704 1100-1373(1387)
155 KOG2048 WD40 repeat protein [G 99.6 9.8E-14 2.1E-18 153.8 25.4 200 454-669 70-277 (691)
156 KOG1034 Transcriptional repres 99.6 4.3E-15 9.3E-20 152.5 13.7 221 456-687 92-365 (385)
157 KOG0303 Actin-binding protein 99.6 5E-14 1.1E-18 147.6 20.4 165 495-667 78-249 (472)
158 KOG0646 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 147.0 23.3 216 468-705 52-300 (476)
159 KOG0321 WD40 repeat-containing 99.6 3.8E-14 8.3E-19 155.8 18.7 230 458-703 54-338 (720)
160 KOG2445 Nuclear pore complex c 99.6 1.8E-13 4E-18 139.7 21.8 210 455-667 61-318 (361)
161 KOG1445 Tumor-specific antigen 99.6 1.2E-14 2.6E-19 158.9 13.9 202 460-667 586-798 (1012)
162 KOG0290 Conserved WD40 repeat- 99.6 6.3E-14 1.4E-18 142.0 17.4 195 451-656 148-355 (364)
163 KOG0642 Cell-cycle nuclear pro 99.6 4.9E-14 1.1E-18 153.5 16.5 208 456-669 297-563 (577)
164 KOG1009 Chromatin assembly com 99.6 5.7E-14 1.2E-18 147.8 16.3 168 455-625 15-196 (434)
165 KOG1644 U2-associated snRNP A' 99.6 4.4E-16 9.6E-21 151.5 0.5 157 87-369 5-162 (233)
166 KOG1034 Transcriptional repres 99.6 1.2E-13 2.5E-18 142.1 17.4 208 455-667 137-383 (385)
167 KOG1517 Guanine nucleotide bin 99.6 3.6E-13 7.8E-18 154.8 22.8 241 455-703 1066-1325(1387)
168 COG2319 FOG: WD40 repeat [Gene 99.6 3.9E-12 8.5E-17 135.7 29.9 227 455-703 67-305 (466)
169 KOG1445 Tumor-specific antigen 99.5 3.9E-14 8.4E-19 154.9 13.9 228 455-694 629-878 (1012)
170 KOG2106 Uncharacterized conser 99.5 1.7E-12 3.6E-17 139.8 24.9 226 455-707 202-472 (626)
171 KOG2096 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 135.1 21.7 228 455-703 134-394 (420)
172 KOG1538 Uncharacterized conser 99.5 1.4E-12 3.1E-17 143.5 24.4 226 456-688 15-276 (1081)
173 KOG4378 Nuclear protein COP1 [ 99.5 1.9E-13 4.1E-18 146.4 15.9 237 456-713 37-281 (673)
174 KOG1408 WD40 repeat protein [F 99.5 4.4E-13 9.5E-18 148.6 18.5 225 467-712 393-711 (1080)
175 KOG1007 WD repeat protein TSSC 99.5 7.5E-13 1.6E-17 134.1 18.7 201 455-667 125-361 (370)
176 KOG1063 RNA polymerase II elon 99.5 1.7E-12 3.7E-17 144.2 21.8 227 455-687 363-676 (764)
177 KOG2139 WD40 repeat protein [G 99.5 3.4E-12 7.4E-17 132.8 21.3 202 456-666 101-308 (445)
178 COG2319 FOG: WD40 repeat [Gene 99.5 3E-11 6.5E-16 128.9 29.1 211 456-684 112-337 (466)
179 KOG0644 Uncharacterized conser 99.5 7.7E-14 1.7E-18 156.9 8.8 194 455-667 192-468 (1113)
180 KOG1310 WD40 repeat protein [G 99.4 1.5E-12 3.2E-17 141.1 16.5 211 455-667 52-303 (758)
181 KOG2110 Uncharacterized conser 99.4 2E-11 4.3E-16 127.7 24.0 193 455-667 48-248 (391)
182 KOG1273 WD40 repeat protein [G 99.4 3.7E-12 8E-17 130.4 18.1 154 501-667 26-226 (405)
183 KOG1063 RNA polymerase II elon 99.4 3E-12 6.4E-17 142.3 18.8 230 456-703 319-639 (764)
184 PRK11028 6-phosphogluconolacto 99.4 6.4E-11 1.4E-15 128.3 27.9 221 456-688 37-286 (330)
185 KOG2919 Guanine nucleotide-bin 99.4 9.9E-12 2.1E-16 127.8 20.0 229 456-703 52-318 (406)
186 KOG0771 Prolactin regulatory e 99.4 2E-12 4.4E-17 137.1 14.9 197 457-668 148-355 (398)
187 KOG1523 Actin-related protein 99.4 1.3E-11 2.7E-16 127.1 19.5 202 455-668 12-237 (361)
188 KOG1587 Cytoplasmic dynein int 99.4 1.9E-11 4E-16 139.1 22.6 214 475-703 221-507 (555)
189 PRK01742 tolB translocation pr 99.4 1.4E-11 3E-16 138.7 20.4 209 455-687 205-427 (429)
190 KOG1524 WD40 repeat-containing 99.4 5.7E-12 1.2E-16 136.3 15.8 202 466-703 75-277 (737)
191 KOG0650 WD40 repeat nucleolar 99.4 5E-12 1.1E-16 138.4 15.6 197 452-664 520-732 (733)
192 KOG1272 WD40-repeat-containing 99.4 2.3E-12 5E-17 137.6 12.7 243 455-714 131-423 (545)
193 PF08662 eIF2A: Eukaryotic tra 99.4 3.7E-11 8.1E-16 120.6 20.7 138 521-673 37-185 (194)
194 KOG2110 Uncharacterized conser 99.4 9.9E-11 2.1E-15 122.6 24.0 228 456-713 8-249 (391)
195 KOG4227 WD40 repeat protein [G 99.4 1.4E-11 3E-16 128.9 15.5 189 495-687 53-256 (609)
196 KOG1009 Chromatin assembly com 99.4 6E-12 1.3E-16 132.8 12.9 161 498-667 13-195 (434)
197 PRK11028 6-phosphogluconolacto 99.3 2.5E-10 5.5E-15 123.6 26.1 211 469-692 5-244 (330)
198 KOG0322 G-protein beta subunit 99.3 1.4E-11 3.1E-16 123.6 14.3 237 455-705 16-316 (323)
199 PRK03629 tolB translocation pr 99.3 3E-10 6.5E-15 127.8 25.0 211 455-686 200-428 (429)
200 PRK01742 tolB translocation pr 99.3 1E-10 2.2E-15 131.7 21.1 201 475-702 183-391 (429)
201 KOG2394 WD40 protein DMR-N9 [G 99.3 5.1E-11 1.1E-15 129.4 16.1 178 465-646 184-383 (636)
202 KOG1538 Uncharacterized conser 99.3 2.4E-10 5.1E-15 126.4 21.1 198 455-667 55-293 (1081)
203 KOG3881 Uncharacterized conser 99.3 2.4E-10 5.2E-15 120.4 20.2 232 455-703 57-311 (412)
204 KOG1334 WD40 repeat protein [G 99.3 1.9E-11 4.2E-16 131.4 12.0 233 456-703 145-457 (559)
205 KOG1524 WD40 repeat-containing 99.3 3.6E-11 7.8E-16 130.3 13.5 180 451-663 102-282 (737)
206 KOG0649 WD40 repeat protein [G 99.3 5.7E-10 1.2E-14 111.1 20.1 195 456-664 117-313 (325)
207 KOG1240 Protein kinase contain 99.3 1.6E-10 3.6E-15 135.3 18.9 202 481-688 1034-1251(1431)
208 KOG1240 Protein kinase contain 99.3 7.7E-10 1.7E-14 129.8 24.0 212 455-667 1050-1334(1431)
209 KOG1310 WD40 repeat protein [G 99.2 3.9E-11 8.5E-16 130.3 12.2 162 496-667 48-231 (758)
210 PRK04922 tolB translocation pr 99.2 8.2E-10 1.8E-14 124.5 23.1 210 455-685 205-432 (433)
211 KOG0771 Prolactin regulatory e 99.2 8.3E-11 1.8E-15 125.0 13.7 177 502-689 148-338 (398)
212 KOG2111 Uncharacterized conser 99.2 1.5E-09 3.2E-14 112.0 22.2 178 476-668 75-257 (346)
213 KOG3881 Uncharacterized conser 99.2 5.8E-10 1.3E-14 117.6 19.6 215 467-687 116-343 (412)
214 KOG0642 Cell-cycle nuclear pro 99.2 1.1E-10 2.4E-15 127.7 14.5 168 455-628 346-565 (577)
215 KOG0322 G-protein beta subunit 99.2 6.2E-11 1.3E-15 119.1 10.9 161 455-623 152-322 (323)
216 KOG1188 WD40 repeat protein [G 99.2 2.2E-10 4.7E-15 118.9 15.2 161 456-626 73-244 (376)
217 KOG2394 WD40 protein DMR-N9 [G 99.2 1.5E-10 3.3E-15 125.8 14.3 162 455-627 221-455 (636)
218 PRK05137 tolB translocation pr 99.2 2.5E-09 5.4E-14 120.6 25.0 210 455-685 203-432 (435)
219 PF08662 eIF2A: Eukaryotic tra 99.2 1.7E-09 3.7E-14 108.6 20.1 149 458-625 10-180 (194)
220 KOG2139 WD40 repeat protein [G 99.2 6.6E-10 1.4E-14 116.0 17.0 178 499-688 99-293 (445)
221 PRK02889 tolB translocation pr 99.2 3E-09 6.6E-14 119.7 23.2 213 455-686 197-425 (427)
222 PRK05137 tolB translocation pr 99.2 6.5E-09 1.4E-13 117.3 25.7 194 476-688 182-389 (435)
223 KOG1523 Actin-related protein 99.1 1.6E-09 3.4E-14 111.8 17.6 189 498-703 10-227 (361)
224 PRK02889 tolB translocation pr 99.1 4.4E-09 9.4E-14 118.4 22.3 195 476-688 176-383 (427)
225 KOG1963 WD40 repeat protein [G 99.1 4.3E-09 9.3E-14 120.6 21.5 223 460-688 23-305 (792)
226 PRK04922 tolB translocation pr 99.1 6.8E-09 1.5E-13 117.1 23.1 194 476-688 184-391 (433)
227 KOG1963 WD40 repeat protein [G 99.1 4.3E-09 9.4E-14 120.6 21.2 163 451-626 203-377 (792)
228 PRK03629 tolB translocation pr 99.1 1.7E-08 3.8E-13 113.6 25.6 194 476-688 179-386 (429)
229 KOG2111 Uncharacterized conser 99.1 2.2E-08 4.8E-13 103.5 23.2 158 455-626 96-258 (346)
230 KOG0644 Uncharacterized conser 99.1 1.4E-10 3E-15 131.1 7.1 113 496-624 188-300 (1113)
231 TIGR02800 propeller_TolB tol-p 99.1 1.6E-08 3.5E-13 112.9 23.5 194 456-670 192-400 (417)
232 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.5E-13 113.0 20.4 191 465-668 4-221 (541)
233 KOG2315 Predicted translation 99.0 2E-08 4.3E-13 110.4 21.8 214 455-687 167-412 (566)
234 PRK00178 tolB translocation pr 99.0 5.9E-08 1.3E-12 109.2 24.4 210 455-685 200-427 (430)
235 PRK04792 tolB translocation pr 99.0 5.1E-08 1.1E-12 110.4 23.7 211 455-685 219-446 (448)
236 KOG0280 Uncharacterized conser 99.0 3.1E-08 6.7E-13 101.4 19.3 205 475-687 45-265 (339)
237 KOG0974 WD-repeat protein WDR6 99.0 1.3E-08 2.8E-13 118.5 18.0 194 465-672 98-293 (967)
238 TIGR02800 propeller_TolB tol-p 99.0 9E-08 2E-12 106.9 24.4 195 475-688 169-377 (417)
239 KOG0974 WD-repeat protein WDR6 98.9 5.9E-09 1.3E-13 121.3 13.8 151 459-625 139-289 (967)
240 KOG1064 RAVE (regulator of V-A 98.9 2.7E-09 5.8E-14 128.9 10.6 184 455-668 2210-2399(2439)
241 KOG2321 WD40 repeat protein [G 98.9 2.1E-08 4.6E-13 110.1 16.7 204 457-667 137-343 (703)
242 KOG2321 WD40 repeat protein [G 98.9 8.7E-08 1.9E-12 105.4 21.2 212 456-686 54-282 (703)
243 KOG1272 WD40-repeat-containing 98.9 3.1E-09 6.7E-14 114.1 9.3 209 436-662 192-404 (545)
244 KOG1354 Serine/threonine prote 98.9 3.1E-08 6.7E-13 103.1 15.9 209 456-667 28-301 (433)
245 PF02239 Cytochrom_D1: Cytochr 98.9 5.9E-07 1.3E-11 99.1 25.3 190 467-669 6-204 (369)
246 KOG4497 Uncharacterized conser 98.9 3.4E-07 7.4E-12 95.0 21.1 217 456-687 51-373 (447)
247 PRK01029 tolB translocation pr 98.8 6.5E-07 1.4E-11 100.8 25.1 216 456-686 187-425 (428)
248 PRK00178 tolB translocation pr 98.8 5.8E-07 1.2E-11 101.2 24.7 194 477-688 180-386 (430)
249 KOG0280 Uncharacterized conser 98.8 6.6E-08 1.4E-12 99.0 14.7 199 456-664 124-330 (339)
250 KOG4497 Uncharacterized conser 98.8 5E-08 1.1E-12 101.0 13.6 184 459-663 14-236 (447)
251 PF02239 Cytochrom_D1: Cytochr 98.8 1.1E-06 2.3E-11 97.1 24.1 226 458-692 41-332 (369)
252 PF10282 Lactonase: Lactonase, 98.8 4.8E-06 1E-10 91.2 29.0 229 456-688 39-304 (345)
253 PRK04792 tolB translocation pr 98.7 1.6E-06 3.4E-11 98.4 24.4 194 477-688 199-405 (448)
254 PLN02919 haloacid dehalogenase 98.7 2.1E-06 4.6E-11 106.4 27.3 211 455-669 625-890 (1057)
255 KOG2041 WD40 repeat protein [G 98.7 2E-07 4.4E-12 104.4 16.1 228 455-703 16-279 (1189)
256 KOG1354 Serine/threonine prote 98.7 2.1E-07 4.5E-12 97.1 14.8 205 455-667 86-359 (433)
257 PF10282 Lactonase: Lactonase, 98.7 6.8E-06 1.5E-10 90.0 27.6 207 455-667 88-322 (345)
258 KOG4547 WD40 repeat-containing 98.7 7.5E-07 1.6E-11 98.8 19.7 148 465-625 69-221 (541)
259 KOG0309 Conserved WD40 repeat- 98.7 7.5E-08 1.6E-12 108.2 11.8 160 456-625 70-233 (1081)
260 KOG3914 WD repeat protein WDR4 98.7 2.3E-07 5E-12 98.7 13.5 162 454-629 63-228 (390)
261 PLN02919 haloacid dehalogenase 98.7 1E-05 2.2E-10 100.4 29.4 228 455-687 569-870 (1057)
262 COG4946 Uncharacterized protei 98.6 9E-06 2E-10 88.1 23.5 173 461-653 327-504 (668)
263 KOG1334 WD40 repeat protein [G 98.6 1.5E-07 3.3E-12 101.9 9.7 209 455-667 234-466 (559)
264 KOG4532 WD40-like repeat conta 98.6 1E-05 2.2E-10 82.3 20.8 192 465-667 83-282 (344)
265 PRK01029 tolB translocation pr 98.6 1.7E-05 3.7E-10 89.4 25.2 198 475-688 164-383 (428)
266 PF08450 SGL: SMP-30/Gluconola 98.5 0.00017 3.8E-09 74.7 30.5 213 457-687 3-237 (246)
267 COG5170 CDC55 Serine/threonine 98.5 1.3E-06 2.7E-11 90.2 13.0 207 455-667 28-309 (460)
268 COG5354 Uncharacterized protei 98.4 4.3E-05 9.4E-10 83.8 23.2 209 455-687 175-411 (561)
269 PF15492 Nbas_N: Neuroblastoma 98.4 3.1E-05 6.7E-10 79.9 20.6 191 456-667 46-259 (282)
270 KOG2066 Vacuolar assembly/sort 98.4 6.8E-06 1.5E-10 94.2 16.6 179 456-667 42-233 (846)
271 KOG2695 WD40 repeat protein [G 98.4 7.9E-07 1.7E-11 93.0 8.2 163 460-634 218-386 (425)
272 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00017 3.8E-09 78.6 26.8 208 455-668 48-331 (352)
273 KOG1409 Uncharacterized conser 98.4 1.2E-05 2.5E-10 84.4 16.0 194 455-667 70-270 (404)
274 COG2706 3-carboxymuconate cycl 98.4 0.00051 1.1E-08 73.0 28.4 240 455-703 41-311 (346)
275 KOG4190 Uncharacterized conser 98.4 8.8E-07 1.9E-11 96.8 7.9 197 456-665 738-946 (1034)
276 KOG1832 HIV-1 Vpr-binding prot 98.4 2.9E-07 6.3E-12 105.2 4.4 204 455-687 1103-1313(1516)
277 PRK04043 tolB translocation pr 98.3 0.0001 2.3E-09 82.8 24.3 192 456-669 190-402 (419)
278 PRK04043 tolB translocation pr 98.3 0.00023 4.9E-09 80.1 26.8 192 476-688 169-380 (419)
279 COG2706 3-carboxymuconate cycl 98.3 0.00023 5E-09 75.5 24.6 210 475-693 15-261 (346)
280 KOG1064 RAVE (regulator of V-A 98.3 4.1E-06 9E-11 102.3 12.1 190 467-674 2181-2373(2439)
281 KOG4714 Nucleoporin [Nuclear s 98.3 2.7E-06 5.9E-11 86.1 8.8 149 465-625 100-255 (319)
282 KOG2314 Translation initiation 98.3 3.4E-05 7.3E-10 85.2 17.8 224 456-687 252-594 (698)
283 KOG4714 Nucleoporin [Nuclear s 98.3 4E-06 8.8E-11 84.9 9.9 203 456-670 39-257 (319)
284 KOG2695 WD40 repeat protein [G 98.2 4.1E-06 8.8E-11 87.7 9.2 146 515-673 228-383 (425)
285 KOG2315 Predicted translation 98.2 0.00018 3.9E-09 79.9 22.1 223 457-703 129-375 (566)
286 PF04762 IKI3: IKI3 family; I 98.2 0.0002 4.3E-09 87.7 24.3 221 455-687 77-360 (928)
287 COG4946 Uncharacterized protei 98.2 0.00027 5.8E-09 77.0 22.2 206 465-688 277-501 (668)
288 KOG4190 Uncharacterized conser 98.2 5.5E-06 1.2E-10 90.7 9.3 167 495-667 732-906 (1034)
289 KOG1275 PAB-dependent poly(A) 98.1 5E-05 1.1E-09 88.1 16.1 184 465-667 146-342 (1118)
290 PF00400 WD40: WD domain, G-be 98.1 8.1E-06 1.8E-10 59.2 6.2 39 582-622 1-39 (39)
291 KOG3914 WD repeat protein WDR4 98.1 4.4E-05 9.4E-10 81.7 13.8 155 509-674 72-231 (390)
292 KOG1409 Uncharacterized conser 98.1 9.1E-05 2E-09 77.9 15.6 203 456-671 27-231 (404)
293 PF06977 SdiA-regulated: SdiA- 98.1 0.0016 3.4E-08 67.9 24.7 202 456-664 24-247 (248)
294 KOG1008 Uncharacterized conser 98.1 1.5E-06 3.3E-11 97.0 2.5 201 455-667 58-275 (783)
295 PF13360 PQQ_2: PQQ-like domai 98.1 0.0023 4.9E-08 65.4 25.8 186 465-668 35-231 (238)
296 COG5354 Uncharacterized protei 98.1 0.00023 5E-09 78.2 18.6 219 453-687 32-286 (561)
297 KOG4532 WD40-like repeat conta 98.1 0.00022 4.7E-09 72.9 17.1 169 511-688 84-263 (344)
298 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0048 1E-07 67.4 28.2 204 476-688 27-311 (352)
299 PF00400 WD40: WD domain, G-be 98.0 2.5E-05 5.4E-10 56.6 6.9 39 486-527 1-39 (39)
300 KOG0309 Conserved WD40 repeat- 98.0 3E-05 6.4E-10 87.9 10.1 220 456-688 27-258 (1081)
301 KOG0882 Cyclophilin-related pe 98.0 3.4E-05 7.4E-10 83.4 10.0 211 465-687 19-252 (558)
302 TIGR03300 assembly_YfgL outer 97.9 0.00088 1.9E-08 74.0 21.2 180 467-664 191-376 (377)
303 PF11768 DUF3312: Protein of u 97.9 0.0004 8.7E-09 78.1 17.8 117 500-626 207-331 (545)
304 PF13855 LRR_8: Leucine rich r 97.9 5.9E-06 1.3E-10 66.6 2.5 56 128-184 4-61 (61)
305 KOG1645 RING-finger-containing 97.9 0.00018 3.9E-09 77.1 14.0 156 454-614 194-351 (463)
306 PF07433 DUF1513: Protein of u 97.9 0.0068 1.5E-07 64.4 25.6 221 455-687 6-269 (305)
307 PF08450 SGL: SMP-30/Gluconola 97.8 0.014 3.1E-07 60.3 27.0 184 456-656 42-244 (246)
308 KOG2041 WD40 repeat protein [G 97.8 0.00037 8E-09 79.0 15.5 218 455-687 73-320 (1189)
309 KOG2314 Translation initiation 97.8 0.0018 3.9E-08 72.0 20.2 225 454-688 211-505 (698)
310 KOG2114 Vacuolar assembly/sort 97.8 0.0036 7.8E-08 72.9 23.3 199 461-669 31-245 (933)
311 PF04762 IKI3: IKI3 family; I 97.8 0.0018 3.8E-08 79.5 22.2 199 456-667 212-456 (928)
312 PF14580 LRR_9: Leucine-rich r 97.8 1.6E-05 3.4E-10 78.4 3.0 104 100-207 42-149 (175)
313 TIGR03300 assembly_YfgL outer 97.7 0.0028 6.1E-08 70.0 20.8 182 465-667 64-259 (377)
314 COG5170 CDC55 Serine/threonine 97.7 0.00034 7.4E-09 72.6 11.9 205 456-667 88-367 (460)
315 KOG1920 IkappaB kinase complex 97.7 0.0034 7.4E-08 75.6 20.8 203 455-667 70-322 (1265)
316 PF13360 PQQ_2: PQQ-like domai 97.6 0.0069 1.5E-07 61.8 20.7 179 474-668 1-192 (238)
317 PF13855 LRR_8: Leucine rich r 97.6 1.2E-05 2.5E-10 64.9 0.1 59 147-208 1-59 (61)
318 KOG3617 WD40 and TPR repeat-co 97.6 0.0013 2.9E-08 75.9 16.2 82 444-529 50-131 (1416)
319 KOG2066 Vacuolar assembly/sort 97.6 0.0022 4.9E-08 74.1 17.9 144 465-625 82-234 (846)
320 KOG1275 PAB-dependent poly(A) 97.5 0.0013 2.8E-08 76.8 13.6 174 510-707 146-337 (1118)
321 PF11768 DUF3312: Protein of u 97.4 0.0045 9.8E-08 69.9 16.2 111 553-667 208-329 (545)
322 KOG1645 RING-finger-containing 97.4 0.0013 2.7E-08 70.8 11.1 161 478-653 175-346 (463)
323 PRK11138 outer membrane biogen 97.4 0.013 2.8E-07 65.3 20.1 181 467-666 206-393 (394)
324 KOG1912 WD40 repeat protein [G 97.4 0.01 2.2E-07 68.4 18.9 199 455-667 57-304 (1062)
325 KOG4194 Membrane glycoprotein 97.3 3.8E-05 8.2E-10 85.9 -1.6 80 127-207 319-401 (873)
326 KOG1008 Uncharacterized conser 97.2 6.5E-05 1.4E-09 84.4 -0.9 163 452-625 101-276 (783)
327 KOG1920 IkappaB kinase complex 97.1 0.044 9.5E-07 66.5 21.0 181 499-700 69-307 (1265)
328 KOG1912 WD40 repeat protein [G 97.1 0.0078 1.7E-07 69.4 14.0 151 457-623 19-185 (1062)
329 KOG3621 WD40 repeat-containing 97.0 0.012 2.6E-07 67.5 14.4 202 460-674 40-253 (726)
330 KOG2114 Vacuolar assembly/sort 97.0 0.032 6.9E-07 65.4 17.9 175 500-687 27-226 (933)
331 KOG1832 HIV-1 Vpr-binding prot 97.0 0.0011 2.4E-08 76.9 6.0 172 496-688 1099-1279(1516)
332 PF03178 CPSF_A: CPSF A subuni 96.9 0.17 3.7E-06 54.7 22.9 186 466-665 42-264 (321)
333 KOG0531 Protein phosphatase 1, 96.9 0.00019 4.2E-09 80.6 -0.1 105 90-205 42-147 (414)
334 KOG3207 Beta-tubulin folding c 96.9 0.0003 6.5E-09 76.7 1.4 121 79-205 202-333 (505)
335 PF03178 CPSF_A: CPSF A subuni 96.9 0.086 1.9E-06 57.0 20.5 182 476-667 2-202 (321)
336 PF04053 Coatomer_WDAD: Coatom 96.9 0.16 3.5E-06 57.5 22.8 195 455-686 34-243 (443)
337 PF04841 Vps16_N: Vps16, N-ter 96.9 0.21 4.7E-06 56.1 23.6 174 477-667 62-246 (410)
338 PRK02888 nitrous-oxide reducta 96.9 0.08 1.7E-06 61.4 20.0 95 571-667 295-404 (635)
339 PRK11138 outer membrane biogen 96.8 0.092 2E-06 58.5 20.3 185 465-667 68-274 (394)
340 PF15492 Nbas_N: Neuroblastoma 96.8 0.55 1.2E-05 49.1 23.7 148 460-614 4-167 (282)
341 KOG2739 Leucine-rich acidic nu 96.8 0.00048 1E-08 70.8 1.4 81 125-207 43-125 (260)
342 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.082 1.8E-06 47.9 15.4 101 456-575 2-109 (111)
343 PF00780 CNH: CNH domain; Int 96.8 0.66 1.4E-05 48.6 25.2 193 465-672 6-221 (275)
344 PF08596 Lgl_C: Lethal giant l 96.8 0.13 2.7E-06 57.5 20.4 203 455-665 88-333 (395)
345 COG3391 Uncharacterized conser 96.8 0.37 8E-06 53.6 24.1 221 456-692 33-269 (381)
346 PF07433 DUF1513: Protein of u 96.7 0.18 4E-06 53.7 20.2 178 501-687 7-228 (305)
347 PRK02888 nitrous-oxide reducta 96.7 0.083 1.8E-06 61.2 18.8 104 550-656 320-450 (635)
348 PF06977 SdiA-regulated: SdiA- 96.7 0.22 4.7E-06 52.1 20.5 181 496-687 19-233 (248)
349 KOG3617 WD40 and TPR repeat-co 96.7 0.0031 6.6E-08 73.1 7.2 106 556-667 21-131 (1416)
350 KOG0882 Cyclophilin-related pe 96.7 0.011 2.4E-07 64.5 10.9 163 496-668 7-175 (558)
351 KOG2123 Uncharacterized conser 96.7 0.0017 3.7E-08 67.3 4.3 35 334-368 104-138 (388)
352 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.073 1.6E-06 48.2 14.1 102 501-619 2-109 (111)
353 PF12799 LRR_4: Leucine Rich r 96.6 0.00067 1.5E-08 51.1 0.9 39 147-187 1-39 (44)
354 PF08596 Lgl_C: Lethal giant l 96.6 0.17 3.7E-06 56.5 20.2 207 455-668 3-291 (395)
355 COG3386 Gluconolactonase [Carb 96.6 0.2 4.3E-06 54.0 19.7 203 460-677 31-253 (307)
356 COG3391 Uncharacterized conser 96.6 0.58 1.3E-05 52.1 23.9 198 455-668 75-284 (381)
357 smart00320 WD40 WD40 repeats. 96.6 0.0064 1.4E-07 41.2 5.5 39 582-622 2-40 (40)
358 PF08553 VID27: VID27 cytoplas 96.5 0.039 8.4E-07 66.0 14.8 160 455-623 482-646 (794)
359 cd00116 LRR_RI Leucine-rich re 96.4 0.0058 1.2E-07 65.3 6.9 109 99-209 80-204 (319)
360 KOG4640 Anaphase-promoting com 96.4 0.012 2.6E-07 66.8 9.4 92 552-646 22-114 (665)
361 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.85 1.8E-05 47.2 21.4 128 460-603 17-145 (354)
362 COG0823 TolB Periplasmic compo 96.4 0.08 1.7E-06 59.7 15.9 185 456-658 195-390 (425)
363 COG0823 TolB Periplasmic compo 96.4 0.14 3E-06 57.8 17.5 154 499-667 193-358 (425)
364 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.4 8.7E-06 49.5 18.5 69 465-536 62-130 (354)
365 smart00320 WD40 WD40 repeats. 96.3 0.013 2.9E-07 39.6 5.8 38 487-527 3-40 (40)
366 cd00116 LRR_RI Leucine-rich re 96.3 0.0098 2.1E-07 63.6 7.5 148 52-208 9-175 (319)
367 KOG3621 WD40 repeat-containing 96.2 0.041 8.9E-07 63.3 11.8 115 553-668 36-155 (726)
368 PF00930 DPPIV_N: Dipeptidyl p 96.1 1.3 2.9E-05 48.5 23.5 238 455-703 44-349 (353)
369 KOG4640 Anaphase-promoting com 96.1 0.028 6.2E-07 63.9 10.0 74 455-533 22-96 (665)
370 PF02897 Peptidase_S9_N: Proly 96.0 3 6.5E-05 46.6 25.9 217 455-687 125-382 (414)
371 PF08553 VID27: VID27 cytoplas 96.0 0.12 2.6E-06 61.9 15.1 144 510-666 492-646 (794)
372 PLN00113 leucine-rich repeat r 95.8 0.006 1.3E-07 75.9 3.6 77 128-207 143-221 (968)
373 cd00216 PQQ_DH Dehydrogenases 95.7 0.41 8.8E-06 55.1 17.7 158 459-634 222-434 (488)
374 COG3204 Uncharacterized protei 95.7 1.1 2.4E-05 47.3 18.8 168 456-626 88-265 (316)
375 cd00216 PQQ_DH Dehydrogenases 95.6 0.85 1.8E-05 52.5 20.0 199 466-672 61-325 (488)
376 KOG2395 Protein involved in va 95.6 0.47 1E-05 53.4 16.5 139 514-667 349-500 (644)
377 KOG1259 Nischarin, modulator o 95.6 0.0099 2.1E-07 62.3 3.3 96 100-203 284-379 (490)
378 PF04053 Coatomer_WDAD: Coatom 95.5 0.38 8.2E-06 54.6 16.2 141 499-667 33-173 (443)
379 PHA02713 hypothetical protein; 95.4 0.34 7.4E-06 56.7 16.0 186 465-668 303-534 (557)
380 PF12799 LRR_4: Leucine Rich r 95.3 0.011 2.4E-07 44.5 2.1 36 128-164 4-40 (44)
381 KOG1644 U2-associated snRNP A' 95.3 0.0077 1.7E-07 59.9 1.4 103 102-208 44-150 (233)
382 KOG4194 Membrane glycoprotein 95.3 0.0087 1.9E-07 67.7 2.0 165 22-206 66-253 (873)
383 KOG3207 Beta-tubulin folding c 95.2 0.0058 1.3E-07 67.0 0.4 103 100-205 121-229 (505)
384 KOG2079 Vacuolar assembly/sort 94.9 0.11 2.5E-06 62.3 9.8 99 561-661 98-199 (1206)
385 TIGR03074 PQQ_membr_DH membran 94.8 7.3 0.00016 47.3 25.0 203 466-673 194-484 (764)
386 PHA03098 kelch-like protein; P 94.7 1.3 2.8E-05 51.5 18.1 190 465-669 294-513 (534)
387 PF04841 Vps16_N: Vps16, N-ter 94.7 9.7 0.00021 42.9 25.6 185 455-652 82-274 (410)
388 KOG4579 Leucine-rich repeat (L 94.6 0.015 3.2E-07 54.7 1.2 84 114-200 43-128 (177)
389 PLN00113 leucine-rich repeat r 94.4 0.023 5E-07 70.8 2.8 101 101-208 141-246 (968)
390 PF15390 DUF4613: Domain of un 94.3 0.97 2.1E-05 51.7 14.9 119 548-667 54-186 (671)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 8 0.00017 45.1 23.2 195 466-671 69-338 (527)
392 KOG2395 Protein involved in va 94.2 0.58 1.3E-05 52.7 12.6 159 456-624 335-500 (644)
393 PF06433 Me-amine-dh_H: Methyl 94.0 7.8 0.00017 42.2 20.5 204 456-672 97-326 (342)
394 PF00780 CNH: CNH domain; Int 94.0 2.8 6.1E-05 43.8 17.2 142 510-667 6-165 (275)
395 PF14583 Pectate_lyase22: Olig 93.9 1.7 3.8E-05 47.9 15.5 178 476-666 168-380 (386)
396 KOG4441 Proteins containing BT 93.6 2 4.3E-05 50.5 16.6 188 465-669 284-501 (571)
397 PF12894 Apc4_WD40: Anaphase-p 93.6 0.21 4.6E-06 38.2 5.6 31 455-487 13-43 (47)
398 PF05096 Glu_cyclase_2: Glutam 93.4 12 0.00026 39.4 23.6 183 456-656 47-249 (264)
399 PF15390 DUF4613: Domain of un 93.4 1.5 3.3E-05 50.2 14.3 125 499-626 57-188 (671)
400 KOG2079 Vacuolar assembly/sort 93.4 0.95 2.1E-05 54.9 13.2 73 454-530 131-204 (1206)
401 PF06433 Me-amine-dh_H: Methyl 93.3 5.8 0.00013 43.1 18.1 169 459-631 140-327 (342)
402 KOG1859 Leucine-rich repeat pr 93.1 0.034 7.4E-07 64.5 0.8 71 127-203 189-259 (1096)
403 KOG4441 Proteins containing BT 93.0 2.3 4.9E-05 50.0 15.7 184 458-660 327-534 (571)
404 PRK13616 lipoprotein LpqB; Pro 92.7 8.5 0.00018 45.4 19.9 157 455-623 351-524 (591)
405 PF02897 Peptidase_S9_N: Proly 92.7 1.9 4.1E-05 48.2 14.2 113 554-668 127-261 (414)
406 KOG2444 WD40 repeat protein [G 92.5 0.32 7E-06 49.4 6.7 140 513-667 32-177 (238)
407 PHA02790 Kelch-like protein; P 92.5 5.6 0.00012 45.7 17.9 184 465-668 271-471 (480)
408 PF14727 PHTB1_N: PTHB1 N-term 92.4 23 0.00049 40.0 22.8 156 462-623 33-203 (418)
409 KOG2444 WD40 repeat protein [G 92.4 0.47 1E-05 48.2 7.7 107 509-625 68-178 (238)
410 PLN03150 hypothetical protein; 92.3 0.083 1.8E-06 62.6 2.7 77 129-208 422-500 (623)
411 PLN03210 Resistant to P. syrin 92.2 0.097 2.1E-06 66.6 3.3 103 99-209 588-692 (1153)
412 PRK13616 lipoprotein LpqB; Pro 92.0 5.2 0.00011 47.2 17.0 169 499-686 350-551 (591)
413 PLN03210 Resistant to P. syrin 92.0 0.09 1.9E-06 66.9 2.7 78 127-209 591-668 (1153)
414 PHA02713 hypothetical protein; 92.0 1.5 3.2E-05 51.4 12.6 150 465-631 351-540 (557)
415 KOG0531 Protein phosphatase 1, 91.9 0.064 1.4E-06 60.3 1.2 72 128-206 98-170 (414)
416 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.7 14 0.0003 43.1 20.0 30 561-590 471-500 (527)
417 COG3490 Uncharacterized protei 91.6 7.7 0.00017 41.0 15.5 104 501-613 70-180 (366)
418 PRK15387 E3 ubiquitin-protein 91.1 0.15 3.2E-06 61.5 3.1 66 91-164 191-258 (788)
419 KOG3630 Nuclear pore complex, 91.0 2.5 5.5E-05 51.7 12.9 135 551-687 101-255 (1405)
420 KOG3665 ZYG-1-like serine/thre 90.6 0.11 2.4E-06 62.0 1.4 91 103-204 104-201 (699)
421 smart00446 LRRcap occurring C- 90.5 0.15 3.4E-06 33.7 1.4 21 336-356 2-22 (26)
422 KOG2982 Uncharacterized conser 90.5 0.037 8E-07 58.2 -2.4 103 101-205 147-256 (418)
423 PF07995 GSDH: Glucose / Sorbo 90.1 32 0.00069 37.5 24.0 233 455-703 3-326 (331)
424 TIGR02604 Piru_Ver_Nterm putat 90.1 34 0.00074 37.8 23.6 150 455-614 15-203 (367)
425 KOG1909 Ran GTPase-activating 90.1 0.17 3.8E-06 54.3 2.2 109 101-210 93-253 (382)
426 TIGR03118 PEPCTERM_chp_1 conse 89.8 32 0.00068 37.0 20.8 203 456-667 25-279 (336)
427 COG3490 Uncharacterized protei 89.8 5.3 0.00012 42.1 12.5 112 582-702 58-181 (366)
428 PF12894 Apc4_WD40: Anaphase-p 89.3 0.84 1.8E-05 34.9 4.8 34 551-585 12-45 (47)
429 PF05694 SBP56: 56kDa selenium 89.3 14 0.00031 41.5 16.1 119 456-582 183-344 (461)
430 PF12234 Rav1p_C: RAVE protein 89.0 11 0.00023 44.7 15.8 101 563-666 41-155 (631)
431 PF08728 CRT10: CRT10; InterP 89.0 5.3 0.00012 47.6 13.3 114 510-623 113-245 (717)
432 KOG4499 Ca2+-binding protein R 88.8 13 0.00028 38.4 14.0 102 501-604 160-264 (310)
433 PF10647 Gmad1: Lipoprotein Lp 88.7 18 0.0004 37.8 16.1 131 552-687 25-177 (253)
434 KOG4579 Leucine-rich repeat (L 88.6 0.2 4.4E-06 47.3 1.1 119 82-204 35-154 (177)
435 KOG1897 Damage-specific DNA bi 88.6 50 0.0011 40.6 20.7 156 454-624 775-942 (1096)
436 KOG0618 Serine/threonine phosp 88.5 0.1 2.2E-06 62.3 -0.9 97 100-205 383-483 (1081)
437 PF02333 Phytase: Phytase; In 88.0 48 0.001 36.8 23.1 201 459-668 59-291 (381)
438 PF14583 Pectate_lyase22: Olig 87.8 50 0.0011 36.7 22.0 177 460-654 42-254 (386)
439 KOG0444 Cytoskeletal regulator 87.7 0.13 2.9E-06 58.8 -0.7 54 129-184 249-303 (1255)
440 KOG3630 Nuclear pore complex, 87.7 4.3 9.3E-05 49.8 11.5 138 514-654 117-260 (1405)
441 PF14727 PHTB1_N: PTHB1 N-term 87.6 35 0.00075 38.5 18.2 150 509-666 35-203 (418)
442 KOG4658 Apoptotic ATPase [Sign 87.6 0.31 6.6E-06 59.9 2.2 101 100-205 571-675 (889)
443 TIGR02604 Piru_Ver_Nterm putat 87.1 22 0.00047 39.3 16.4 100 552-656 73-202 (367)
444 COG3386 Gluconolactonase [Carb 87.1 18 0.0004 39.0 15.2 151 455-615 112-277 (307)
445 PF05096 Glu_cyclase_2: Glutam 87.1 44 0.00094 35.3 23.6 190 488-701 35-250 (264)
446 PF00930 DPPIV_N: Dipeptidyl p 87.1 23 0.0005 38.8 16.5 148 498-656 183-346 (353)
447 PLN03150 hypothetical protein; 86.9 0.47 1E-05 56.3 3.2 82 102-185 420-503 (623)
448 KOG1916 Nuclear protein, conta 86.0 0.16 3.5E-06 59.9 -1.2 162 456-625 183-375 (1283)
449 PHA03098 kelch-like protein; P 85.5 12 0.00026 43.4 14.0 150 465-629 342-516 (534)
450 PF05694 SBP56: 56kDa selenium 84.9 75 0.0016 35.9 19.4 192 456-656 132-392 (461)
451 KOG1259 Nischarin, modulator o 84.6 0.4 8.7E-06 50.6 1.0 99 100-205 307-406 (490)
452 TIGR03548 mutarot_permut cycli 84.5 47 0.001 35.7 17.1 110 465-584 72-198 (323)
453 PF10168 Nup88: Nuclear pore c 84.5 47 0.001 40.2 18.3 78 454-533 85-183 (717)
454 PF10313 DUF2415: Uncharacteri 84.4 2.8 6E-05 31.4 5.1 33 594-626 1-35 (43)
455 PRK15387 E3 ubiquitin-protein 84.1 0.44 9.6E-06 57.5 1.2 33 128-163 245-277 (788)
456 KOG2280 Vacuolar assembly/sort 84.0 27 0.00059 41.5 15.3 177 475-667 63-246 (829)
457 KOG4237 Extracellular matrix p 83.6 0.44 9.6E-06 52.1 0.8 75 129-206 71-148 (498)
458 PF08728 CRT10: CRT10; InterP 83.6 30 0.00064 41.5 15.7 110 553-666 103-245 (717)
459 PF10313 DUF2415: Uncharacteri 83.5 3.8 8.3E-05 30.7 5.5 31 455-485 2-34 (43)
460 TIGR03074 PQQ_membr_DH membran 83.3 71 0.0015 39.0 19.3 160 465-628 259-481 (764)
461 PF12234 Rav1p_C: RAVE protein 83.2 13 0.00027 44.0 12.4 101 595-703 31-149 (631)
462 KOG0444 Cytoskeletal regulator 83.1 0.38 8.1E-06 55.3 0.0 98 101-200 79-178 (1255)
463 KOG3665 ZYG-1-like serine/thre 82.8 0.99 2.2E-05 54.1 3.4 105 98-206 120-228 (699)
464 KOG1900 Nuclear pore complex, 82.5 27 0.00059 43.9 15.2 147 472-625 95-273 (1311)
465 COG4886 Leucine-rich repeat (L 82.2 0.79 1.7E-05 50.9 2.2 72 127-204 118-192 (394)
466 COG5167 VID27 Protein involved 81.7 24 0.00051 40.2 13.1 159 453-624 466-632 (776)
467 KOG1983 Tomosyn and related SN 81.6 17 0.00036 45.6 13.5 29 455-484 37-65 (993)
468 PRK10115 protease 2; Provision 81.1 1.4E+02 0.0029 36.2 26.0 113 454-580 127-255 (686)
469 PHA02790 Kelch-like protein; P 81.0 34 0.00073 39.4 15.0 145 465-627 318-473 (480)
470 PRK15370 E3 ubiquitin-protein 80.5 1.1 2.4E-05 54.2 2.8 57 126-187 347-403 (754)
471 KOG2982 Uncharacterized conser 80.5 0.88 1.9E-05 48.2 1.6 208 130-375 76-307 (418)
472 COG3204 Uncharacterized protei 80.4 87 0.0019 33.5 20.7 164 496-670 83-266 (316)
473 PRK15370 E3 ubiquitin-protein 80.2 1.2 2.6E-05 53.9 2.9 78 100-186 220-297 (754)
474 KOG0618 Serine/threonine phosp 80.1 0.83 1.8E-05 55.0 1.4 67 130-197 364-432 (1081)
475 PF10168 Nup88: Nuclear pore c 79.3 1.4E+02 0.003 36.3 19.7 82 499-582 85-181 (717)
476 KOG2247 WD40 repeat-containing 78.7 0.29 6.3E-06 54.5 -2.6 147 456-620 37-184 (615)
477 PF14655 RAB3GAP2_N: Rab3 GTPa 78.7 16 0.00035 41.1 10.9 81 550-631 307-405 (415)
478 COG5276 Uncharacterized conser 78.6 1E+02 0.0022 33.1 18.2 162 480-657 68-233 (370)
479 TIGR03606 non_repeat_PQQ dehyd 78.5 1.2E+02 0.0026 34.6 17.9 149 502-654 33-246 (454)
480 COG5238 RNA1 Ran GTPase-activa 77.9 1.7 3.6E-05 45.7 2.7 145 34-187 148-318 (388)
481 KOG1897 Damage-specific DNA bi 77.9 1.9E+02 0.004 35.9 22.0 195 456-666 407-612 (1096)
482 smart00370 LRR Leucine-rich re 77.2 1.2 2.6E-05 29.1 0.9 24 146-170 1-24 (26)
483 smart00369 LRR_TYP Leucine-ric 77.2 1.2 2.6E-05 29.1 0.9 24 146-170 1-24 (26)
484 PF07569 Hira: TUP1-like enhan 77.0 17 0.00036 37.3 9.8 69 558-628 18-99 (219)
485 PRK10115 protease 2; Provision 76.8 38 0.00082 40.9 14.2 111 553-666 129-254 (686)
486 KOG4237 Extracellular matrix p 76.7 1.4 3E-05 48.4 1.8 58 143-203 270-327 (498)
487 PF14781 BBS2_N: Ciliary BBSom 76.6 56 0.0012 30.9 12.0 117 553-671 1-129 (136)
488 KOG1859 Leucine-rich repeat pr 76.5 0.79 1.7E-05 53.8 -0.1 105 100-212 187-294 (1096)
489 PF10214 Rrn6: RNA polymerase 75.9 2E+02 0.0044 35.2 20.6 138 548-686 77-257 (765)
490 KOG1898 Splicing factor 3b, su 75.4 1.1E+02 0.0023 38.2 16.7 177 477-668 854-1049(1205)
491 COG5167 VID27 Protein involved 75.1 35 0.00076 38.9 12.0 132 562-702 479-624 (776)
492 PLN00033 photosystem II stabil 75.0 1.4E+02 0.003 33.6 17.0 110 550-664 280-396 (398)
493 TIGR03548 mutarot_permut cycli 75.0 1.2E+02 0.0027 32.4 19.7 95 561-658 123-233 (323)
494 TIGR03547 muta_rot_YjhT mutatr 74.8 1.3E+02 0.0028 32.6 18.2 41 617-658 291-331 (346)
495 PF00560 LRR_1: Leucine Rich R 73.6 1.6 3.5E-05 27.5 0.8 22 148-171 1-22 (22)
496 PF07569 Hira: TUP1-like enhan 73.1 27 0.00058 35.8 10.1 76 509-586 20-101 (219)
497 KOG4460 Nuclear pore complex, 73.0 52 0.0011 37.7 12.7 75 552-626 105-200 (741)
498 PF10214 Rrn6: RNA polymerase 72.7 2.4E+02 0.0052 34.6 24.1 178 455-635 81-289 (765)
499 PLN02193 nitrile-specifier pro 71.6 1.6E+02 0.0035 33.7 17.1 156 465-631 228-417 (470)
500 COG3823 Glutamine cyclotransfe 71.6 1.2E+02 0.0027 30.9 15.7 174 465-655 55-247 (262)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-31 Score=270.89 Aligned_cols=228 Identities=20% Similarity=0.316 Sum_probs=197.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.|++|+| ++..||+|+.|.++|+||+.+..+..+.+ +|...|.+++|+ |++..|++|+.||+|++||.+++++.
T Consensus 117 ~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 117 AVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred cEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcc
Confidence 689999999 99999999999999999999999999988 999999999998 79999999999999999999998876
Q ss_pred ccccccCcceeEeccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
...+.+ |...|++++|.| ....+++++.||.|+|||+..++++..+.+ |..+|+|+.|.-+| ++
T Consensus 193 g~~l~g--------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrwGG~g--li 261 (480)
T KOG0271|consen 193 GRALRG--------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRWGGEG--LI 261 (480)
T ss_pred cccccC--------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEEcCCc--eE
Confidence 555544 445689999876 457899999999999999999999999997 99999999998766 99
Q ss_pred EEEECCCcEEEEECCCCCc-------------------------------------------------------------
Q 004969 610 ATSSFDQDVKLWDLRQKPI------------------------------------------------------------- 628 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~------------------------------------------------------------- 628 (721)
++||.|++|++|+...+.+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 9999999999999765321
Q ss_pred ----------------eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCC
Q 004969 629 ----------------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 629 ----------------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~ 687 (721)
+++....+|...+ .+.||||++|+++++-|.+|++|+-+ |+ .+++|-..|..++|+.++
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 0111223455555 79999999999999999999999988 44 367788899999999999
Q ss_pred CcccccccEEEEecCCC
Q 004969 688 KSEIVKVNLLASTDHCD 704 (721)
Q Consensus 688 ~~~~v~v~lLASgs~~~ 704 (721)
.+|+|||...
T Consensus 422 -------RLlVS~SkDs 431 (480)
T KOG0271|consen 422 -------RLLVSGSKDS 431 (480)
T ss_pred -------cEEEEcCCCc
Confidence 9999999864
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.8e-31 Score=277.72 Aligned_cols=228 Identities=17% Similarity=0.239 Sum_probs=201.4
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
..+..+.|++ +++.||||+.+|.++||+..+...+.++. ||...|.++.|+|. ++..++||+.||++++|++++..
T Consensus 176 rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 176 RPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 3588899999 99999999999999999999998888888 99999999999987 47799999999999999999854
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
+ +..+.+ |...|..++|||+|.++++++.|.+.++||+++++.+....| |...|.+++|+||| .+++||
T Consensus 253 ~-l~~l~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DG-SL~~tG 321 (459)
T KOG0272|consen 253 P-LQDLEG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDG-SLAATG 321 (459)
T ss_pred c-hhhhhc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCC-ceeecc
Confidence 3 333333 335679999999999999999999999999999998887777 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEECCCC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~fsP~~ 687 (721)
+.|..-||||+|++.+ +..+.+|...+ +++|+|+|..|+||+.|++++|||+++.. +..|..-|..|.|+|..
T Consensus 322 GlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred CccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999966 66678898888 99999999999999999999999999543 45667789999999943
Q ss_pred CcccccccEEEEecCC
Q 004969 688 KSEIVKVNLLASTDHC 703 (721)
Q Consensus 688 ~~~~v~v~lLASgs~~ 703 (721)
. .+|+|||-.
T Consensus 400 g------~fL~TasyD 409 (459)
T KOG0272|consen 400 G------YFLVTASYD 409 (459)
T ss_pred C------eEEEEcccC
Confidence 2 889988875
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=275.48 Aligned_cols=226 Identities=20% Similarity=0.286 Sum_probs=205.8
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
+|.++.|+|. ++.-+|+|+.||+|++|++.+...+..+. +|...|..++|+ |+|.+|+|++.|.+-++||++++..
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~--gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE--GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh--cchhhheeeeec-CCCceeeecccccchhhcccccchh
Confidence 6889999996 47799999999999999999888888887 899999999999 7999999999999999999999665
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.. ..-.|...|.+++|+++|..+++||.|..-+|||+++|+++..+.+ |..+|.+|+|+|+| +.+||||
T Consensus 296 lL---------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNG-y~lATgs 364 (459)
T KOG0272|consen 296 LL---------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNG-YHLATGS 364 (459)
T ss_pred hH---------hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCc-eEEeecC
Confidence 21 2234556799999999999999999999999999999999999998 99999999999999 9999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~ 687 (721)
.|++++|||+|.... ++++++|...| .+.|+| .|.+|+|++.|++++||.-++ +.+.+|...|.++..+|++
T Consensus 365 ~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 999999999998754 88899999998 799999 889999999999999999773 3477889999999999999
Q ss_pred CcccccccEEEEecCC
Q 004969 688 KSEIVKVNLLASTDHC 703 (721)
Q Consensus 688 ~~~~v~v~lLASgs~~ 703 (721)
..++|++..
T Consensus 443 -------~~i~t~s~D 451 (459)
T KOG0272|consen 443 -------QAIATSSFD 451 (459)
T ss_pred -------ceEEEeccC
Confidence 999999876
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=261.04 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=188.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCCCeEEEEEee----CCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS-YIPSFGAMNSVLGLCWLK----KYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~-~l~~~~H~~~V~sl~fsp----~d~~~LaSgs~DGtVrIWDi~ 529 (721)
-|.|++|+| |++.||+|+.||+|++||.++|+.+. .++ +|...|++++|.| +...+|+++|.||+|+|||+.
T Consensus 159 WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 159 WVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEEECC-CcchhhccccCCeEEEecCCCCCccccccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 599999999 99999999999999999999988754 454 9999999999976 345699999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-----------------------
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ----------------------- 586 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~----------------------- 586 (721)
.+.+. .....|..+|+|+.| -..+++++++.|++|++|+...|...+
T Consensus 236 ~~~~~---------~~lsgHT~~VTCvrw-GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 236 LGTCV---------RTLSGHTASVTCVRW-GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred CceEE---------EEeccCccceEEEEE-cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence 86542 223345567888888 335677777788888888776543222
Q ss_pred --------------------------------------------------------EEccccCCCeEEEEEcCCCCcEEE
Q 004969 587 --------------------------------------------------------VFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 587 --------------------------------------------------------~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.+.+ |..-|+.+.|+||+ +++|
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~-r~IA 383 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDG-RYIA 383 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCc-cEEE
Confidence 2223 77789999999999 8999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEECC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYTRP 685 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~fsP 685 (721)
++|.|.+||+||.++++. +.++.+|.+.+ .++|+.|.+.|++|+.|.++++|+++.+. +.+|...|.++.|+|
T Consensus 384 SaSFDkSVkLW~g~tGk~--lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKF--LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred EeecccceeeeeCCCcch--hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 999999999999999965 66778999998 89999999999999999999999999554 456888999999999
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
+| ...|+|+..
T Consensus 462 DG-------~rV~sggkd 472 (480)
T KOG0271|consen 462 DG-------QRVASGGKD 472 (480)
T ss_pred CC-------ceeecCCCc
Confidence 99 888888875
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=236.67 Aligned_cols=228 Identities=22% Similarity=0.301 Sum_probs=181.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---------------------------------------- 494 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---------------------------------------- 494 (721)
.|.++.|++ |.+++++++.||.+.|||..+...++.++.
T Consensus 57 Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 57 KIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred ceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 467777777 777777777777777777654433333221
Q ss_pred ------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEE
Q 004969 495 ------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLA 567 (721)
Q Consensus 495 ------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls 567 (721)
.+|.+.+.+..|. +...|+|+|.|.+..+||+++++.. ...-.|.+.|.++++.| +++.|++
T Consensus 136 ~v~r~l~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~---------~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQT---------QVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred eeeeeecCccceeEEEEEc--CCCceEecCCCceEEEEEcccceEE---------EEecCCcccEEEEecCCCCCCeEEe
Confidence 2677777777774 3566777777777777777776541 11224667899999999 8899999
Q ss_pred EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-EEEEEe
Q 004969 568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFS 646 (721)
Q Consensus 568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-vsl~fS 646 (721)
|+.|+..++||+|.+..+++|.+ |...|++|.|.|+| .-|++|+.|+++|+||+|..+...++........ ++++||
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cccccceeeeeccCcceeEeecc-cccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 99999999999999999999998 99999999999999 8999999999999999999876666664444333 499999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..|++|++|..|.++.|||.- +. .+.+|+..|.++..+|+| -.++|||=.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-------~av~TgSWD 336 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-------MAVATGSWD 336 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-------cEEEecchh
Confidence 999999999999999999965 32 367889999999999999 888888743
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=5.3e-28 Score=269.93 Aligned_cols=225 Identities=20% Similarity=0.308 Sum_probs=198.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------------------------------EEEEeecCCCCCCeEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------------------------------IVSYIPSFGAMNSVLG 503 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------------------------------~i~~l~~~~H~~~V~s 503 (721)
.++|..|++ ++.++|.|..|..|++|.+...+ ...+ ..||.++|.+
T Consensus 380 ~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~GH~GPVyg 456 (707)
T KOG0263|consen 380 GVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LYGHSGPVYG 456 (707)
T ss_pred cceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--eecCCCceee
Confidence 389999999 89999999999999999876311 1112 2399999999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969 504 LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (721)
Q Consensus 504 l~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~ 582 (721)
..|+ |+.++|+++|.|++||+|.+.+... .+.+ .|..||+.+.|+|.|-+|+++|.|++-++|.....
T Consensus 457 ~sFs-Pd~rfLlScSED~svRLWsl~t~s~----------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 457 CSFS-PDRRFLLSCSEDSSVRLWSLDTWSC----------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred eeec-ccccceeeccCCcceeeeeccccee----------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 9998 7899999999999999999999543 4444 45578999999999999999999999999999999
Q ss_pred cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE
Q 004969 583 RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 583 ~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I 661 (721)
.+.+.|.+ |.+.|.|+.|+|+. ++++|||.|.+||+||+.++.. +..+.||.+++ +++|||+|+||++|+.||.|
T Consensus 526 ~PlRifag-hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 526 KPLRIFAG-HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred Cchhhhcc-cccccceEEECCcc-cccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 99999998 99999999999999 8999999999999999999966 44557888888 99999999999999999999
Q ss_pred EEEEcCC-C---cccccccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969 662 FVQSLRG-D---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCD 704 (721)
Q Consensus 662 ~VWDl~g-~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ 704 (721)
.+||+.+ . .+++|.+.|.++.|+.++ .+||+||..+
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg-------~vLasgg~Dn 641 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDG-------NVLASGGADN 641 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCC-------CEEEecCCCC
Confidence 9999984 3 367888999999999999 9999999873
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=2.8e-27 Score=264.23 Aligned_cols=196 Identities=16% Similarity=0.298 Sum_probs=180.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|....|+| +.++|++++.|++||+|.+.+..++..++ ||..+|+.+.|+ |.|-++||||.|++-++|......+
T Consensus 453 PVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~P- 527 (707)
T KOG0263|consen 453 PVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNKP- 527 (707)
T ss_pred ceeeeeecc-cccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEec-CCceEEEecCCCceeeeeecccCCc-
Confidence 699999999 99999999999999999999999988888 999999999999 6899999999999999999988544
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
..+...|-..|.|+.|||+..++++||.|.+||+||+.+|..++.|.| |.++|.+++|+|+| ++|++|+.
T Consensus 528 --------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~G-r~LaSg~e 597 (707)
T KOG0263|consen 528 --------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCG-RYLASGDE 597 (707)
T ss_pred --------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCC-ceEeeccc
Confidence 233345667899999999999999999999999999999999999998 99999999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
||.|++||+.++.. +..+.+|.+.+ ++.||.+|..||+|+.|++|++||+.
T Consensus 598 d~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 598 DGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99999999999854 56677788887 99999999999999999999999986
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=4.9e-28 Score=252.38 Aligned_cols=238 Identities=22% Similarity=0.296 Sum_probs=200.8
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
..|+++.|++ ++.++++|..+|.|++|+..- ..++.++. .|..+|++++|+| +...+++||+||+|+|||....++
T Consensus 139 s~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a-hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 139 SPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM-NNVKIIQA-HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE 214 (464)
T ss_pred ccceeEEEcc-CCCEEEEcCCCceEEecccch-hhhHHhhH-hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch
Confidence 4799999999 999999999999999999863 34444442 4558999999995 778899999999999999987654
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
..+...|...|.+++|||..+.++++|.|..|++||.++|+++.++.+ |+..|..+.|+|++ ++|+|+|
T Consensus 215 ---------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~-N~Llt~s 283 (464)
T KOG0284|consen 215 ---------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNG-NWLLTGS 283 (464)
T ss_pred ---------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCC-CeeEEcc
Confidence 122345566799999999999999999999999999999999999997 99999999999999 8999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPS 686 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~ 686 (721)
.|..++++|+|+. ..++...+|...+ +++|+| ....|.+|+.||.|..|.+. ..+ -..|...|.+++|||-
T Consensus 284 kD~~~kv~DiR~m--kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 284 KDQSCKVFDIRTM--KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred CCceEEEEehhHh--HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 9999999999965 3367778888887 999999 55678889999999999987 233 3456789999999999
Q ss_pred CCcccccccEEEEecCCCccccCCcccCCC
Q 004969 687 SKSEIVKVNLLASTDHCDKECSHGQHSRPS 716 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~~ke~s~~~~~~p~ 716 (721)
| .+||+|+.. +...+..+.+|-
T Consensus 362 G-------hil~tgsnd-~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 362 G-------HILATGSND-RTVRFWTRNRPG 383 (464)
T ss_pred c-------eeEeecCCC-cceeeeccCCCC
Confidence 9 999999987 544555554543
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=3e-26 Score=229.56 Aligned_cols=225 Identities=15% Similarity=0.235 Sum_probs=184.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|..+..++ ++++.++|+.||++++||+.+|+..+.+. ||...|.+++|+ +++..++|||.|.+|++|++.+...
T Consensus 65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~--GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck- 139 (315)
T KOG0279|consen 65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV--GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCK- 139 (315)
T ss_pred EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE--ecCCceEEEEec-CCCceeecCCCcceeeeeeecccEE-
Confidence 478899999 99999999999999999999998888887 999999999998 7889999999999999999987432
Q ss_pred ccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
+... .-.+.+.|.++.|+|. ...|+++|.|++|++||+++.+....+.+ |.+.++.++++||| .+.++|
T Consensus 140 ~t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDG-slcasG 210 (315)
T KOG0279|consen 140 YTIH-------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDG-SLCASG 210 (315)
T ss_pred EEEe-------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCC-CEEecC
Confidence 1100 0011456999999998 78999999999999999999999999997 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-cccc------------ccCeE
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF------------NMSIL 679 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~------------~~~V~ 679 (721)
+.||.+.+||++.++. ++.+.+...+.+++|+|+..+|+.+. +..|+|||+..+. +... .....
T Consensus 211 gkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 9999999999999865 77776555555999999887777655 6679999987432 1111 12355
Q ss_pred EEEECCCCCcccccccEEEEecCC
Q 004969 680 AAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 680 ~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.++|+++| ..|.+|-..
T Consensus 288 slaws~dG-------~tLf~g~td 304 (315)
T KOG0279|consen 288 SLAWSADG-------QTLFAGYTD 304 (315)
T ss_pred EEEEcCCC-------cEEEeeecC
Confidence 68999999 555555443
No 10
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-28 Score=251.12 Aligned_cols=266 Identities=18% Similarity=0.281 Sum_probs=226.4
Q ss_pred cccccCCCCCCCCCcccceeeeeeeeeecC-CCCCCceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEE
Q 004969 401 RGKTSRHKTSYPSGMSQYFYTRSLCAAKVG-SSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIV 479 (721)
Q Consensus 401 ~~~~r~~d~~~~p~~~~~~~~r~l~a~k~~-~~a~p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~ 479 (721)
...+|+++|.+|||.++++|+|+++|+|++ ++++||+.++ .||.+| |.|++=+|..-..+++|+.||.|+
T Consensus 22 ~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L--~gHrdG-------V~~lakhp~~ls~~aSGs~DG~Vk 92 (433)
T KOG0268|consen 22 QRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSL--DGHRDG-------VSCLAKHPNKLSTVASGSCDGEVK 92 (433)
T ss_pred cccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhc--cccccc-------cchhhcCcchhhhhhccccCceEE
Confidence 346789999999999999999999999999 9999999988 488886 678999995558899999999999
Q ss_pred EEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe
Q 004969 480 VVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN 559 (721)
Q Consensus 480 IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s 559 (721)
|||+....+..++. +|.+.|.++++. . +.++++|.|.+|+.|.+... ...++.....+..++-+
T Consensus 93 iWnlsqR~~~~~f~--AH~G~V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~-----------p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 93 IWNLSQRECIRTFK--AHEGLVRGICVT-Q--TSFFTVGDDKTVKQWKIDGP-----------PLHTILGKSVYLGIDHH 156 (433)
T ss_pred EEehhhhhhhheee--cccCceeeEEec-c--cceEEecCCcceeeeeccCC-----------cceeeeccccccccccc
Confidence 99999999999988 899999999986 3 77899999999999999873 23344555667788877
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCC
Q 004969 560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG 639 (721)
Q Consensus 560 p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~ 639 (721)
..+..++++|. .|.|||.....++..+.. ....|.++.|+|....+|++|+.|+.|.+||+|+..+ +..+.-...
T Consensus 157 ~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi~~mR 231 (433)
T KOG0268|consen 157 RKNSVFATCGE--QIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVILTMR 231 (433)
T ss_pred cccccccccCc--eeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCc--cceeeeecc
Confidence 78888988885 499999999999999997 6778999999999888999999999999999999854 433333334
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
...++|+|.+-.+++|+.|..++.||++ ..+ .++|...|+.+.|+|.| .-++|||-.
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-------~EfvsgsyD 293 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-------QEFVSGSYD 293 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-------chhcccccc
Confidence 4478999988889999999999999998 344 45666789999999999 777777766
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.9e-26 Score=242.82 Aligned_cols=225 Identities=20% Similarity=0.362 Sum_probs=192.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-|++++|+. +|.+||+|+.||.++||+.. |..+.++. .|.++|.++.|+ ..+++|++++-||++.+||..++...
T Consensus 237 dVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~--~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 237 DVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLG--QHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhh--ccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEE
Confidence 599999999 99999999999999999976 66777776 799999999998 89999999999999999999765431
Q ss_pred ccc-------------------------------cccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969 535 IRG-------------------------------MHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (721)
Q Consensus 535 ~~~-------------------------------~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~ 582 (721)
.+. +....+..++ .|+.+|.++.|+|.+..++++++|++++||.+...
T Consensus 312 q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 110 0011112222 37788999999999999999999999999999999
Q ss_pred cEEEEEccccCCCeEEEEEcCCCC--------cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969 583 RRLQVFADMHKEHINVVKFSNHSP--------SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL 653 (721)
Q Consensus 583 ~~v~~l~~~h~~~V~sI~fsPdg~--------~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La 653 (721)
.....+.. |...|+.+.|+|.|+ ..+++++.|++|++||+..+ ++++.+..|..+| +++|+|+|+|++
T Consensus 392 ~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 392 NSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred cchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCCceEEEEecCCCcEEE
Confidence 99999997 999999999999874 47999999999999999998 5578888888888 999999999999
Q ss_pred EEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCCC
Q 004969 654 GKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 654 sgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~ 687 (721)
+|+.||.|.+|+.+ ++.++.. ...|..+.|+-.+
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence 99999999999998 5555555 3468999999998
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=3.8e-27 Score=245.78 Aligned_cols=226 Identities=19% Similarity=0.289 Sum_probs=194.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|..+.|.| +|+.|++|+..|.+.+|+..+-.....+ .+|..+|.++.|+ .++.+++||+.+|.|++|+..-...
T Consensus 98 ~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtil--QaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 98 PVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETIL--QAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred ceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHh--hhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhh-
Confidence 588899999 9999999999999999997532222223 3899999999998 8999999999999999999876322
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
+ .+...|...|++++|+|.+..|+++++||+|+|||....+....+.+ |.-.|.+++|+|.. .++++||.
T Consensus 173 -k-------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~k-gLiasgsk 242 (464)
T KOG0284|consen 173 -K-------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTK-GLIASGSK 242 (464)
T ss_pred -H-------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCcc-ceeEEccC
Confidence 1 12222336799999999999999999999999999999998888887 99999999999998 69999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-C---CcccccccCeEEEEECCCCCc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-G---DPFRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g---~~l~~~~~~V~~v~fsP~~~~ 689 (721)
|..|++||.+++.+ +.++.+|...| .+.|+|++.+|+++|.|..++++|++ . ..+++|+..|.++.|||-..
T Consensus 243 DnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~- 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE- 319 (464)
T ss_pred CceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc-
Confidence 99999999999966 66778888888 89999999999999999999999998 2 23678889999999999874
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
.++++|+..
T Consensus 320 -----~lftsgg~D 328 (464)
T KOG0284|consen 320 -----SLFTSGGSD 328 (464)
T ss_pred -----cceeeccCC
Confidence 677777765
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.6e-25 Score=221.79 Aligned_cols=218 Identities=21% Similarity=0.277 Sum_probs=185.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC-----CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-----NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-----tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
-|++++..+.+.+.+++++.|.++.+|++. .|..++.+. ||...|..+..+ +++++.++++.||++++||+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--GHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee--ccceEecceEEc-cCCceEEeccccceEEEEEec
Confidence 489999999778999999999999999875 466677777 888899999988 899999999999999999999
Q ss_pred CCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC-Cc
Q 004969 530 HMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-PS 607 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg-~~ 607 (721)
+++. ...| .|...|.++++++++..+++|+.|++|++|+...+.....-...+.+.|+++.|+|.. ..
T Consensus 94 ~g~~----------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 94 TGES----------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred CCcE----------EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9754 3333 4556799999999999999999999999999985544444444348999999999984 35
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccc--ccccCeEEEEE
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR--DFNMSILAAYT 683 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~--~~~~~V~~v~f 683 (721)
++++++.|++||+||+++-+. ...+.+|.+.+ .+++||||..+++|+.||.+.+||++ ++.+. ++...|.+++|
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f 241 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF 241 (315)
T ss_pred EEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe
Confidence 999999999999999998644 55667888888 89999999999999999999999998 44333 44568999999
Q ss_pred CCCC
Q 004969 684 RPSS 687 (721)
Q Consensus 684 sP~~ 687 (721)
+|..
T Consensus 242 spnr 245 (315)
T KOG0279|consen 242 SPNR 245 (315)
T ss_pred cCCc
Confidence 9998
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=244.94 Aligned_cols=232 Identities=18% Similarity=0.289 Sum_probs=194.2
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+++|++++| ||+++|+|+.||.|+|||..+|-+..++. .|+..|++++|+ ..++.++++|.||+|+.||+...+.
T Consensus 351 ~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 351 DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence 4799999999 99999999999999999999999999998 899999999998 8999999999999999999988554
Q ss_pred cccccccCcceeEeccC--CCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 534 SIRGMHYGAGTVTFDEF--DQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~--~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
..+|..+ .+..+++..|.|..+.+|+.|. .|.+|++++|+.+-.+.| |.++|.+++|+|++ ..|+
T Consensus 427 ----------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~-~~La 494 (893)
T KOG0291|consen 427 ----------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDG-SLLA 494 (893)
T ss_pred ----------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEcccc-CeEE
Confidence 2333333 3468899989899999999775 599999999999999998 99999999999999 7999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-cc---------------c--
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF---------------R-- 672 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l---------------~-- 672 (721)
+||.|.+||+||+-... ..+-++........++|+|+|+.|++++.||.|.+||.... .. .
T Consensus 495 S~SWDkTVRiW~if~s~-~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSS-GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred eccccceEEEEEeeccC-ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 99999999999997642 22344555556668999999999999999999999997511 00 0
Q ss_pred ------ccccCeEEEEECCCCCcccccccEEEEecCCCccccC
Q 004969 673 ------DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 709 (721)
Q Consensus 673 ------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~ 709 (721)
........+.++++| ..|.+||.....+.+
T Consensus 574 ~ta~~sa~~K~Ftti~ySaDG-------~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSADG-------KCILAGGESNSICIY 609 (893)
T ss_pred eehhhcccCCceEEEEEcCCC-------CEEEecCCcccEEEE
Confidence 002467889999999 888888877444433
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=245.88 Aligned_cols=228 Identities=20% Similarity=0.273 Sum_probs=193.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|+++.|.|..+.++++|+.|+.|+||++.. +++++++. +|..+|.+++|+ +++..++|+|.|++|++||+++|+.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--gH~k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--GHRKPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--cchhhhhhhhcc-ccCCeeeeeecceeeeeeccccceE
Confidence 3789999998899999999999999999976 88999998 999999999998 8999999999999999999999776
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
...|.....++++.++|++ ..|++|+.|+.|+.||+++++.++++.. |-+.|..+.|-++| ..+++.
T Consensus 293 ----------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-hLg~i~~i~F~~~g-~rFiss 360 (503)
T KOG0282|consen 293 ----------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-HLGAILDITFVDEG-RRFISS 360 (503)
T ss_pred ----------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-hhhheeeeEEccCC-ceEeee
Confidence 4556566678999999999 7788888999999999999999999886 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCce--------------------------------eEEE------------ecCCC---CeEEEEE
Q 004969 613 SFDQDVKLWDLRQKPIQ--------------------------------PCYT------------ASSSK---GNVMVCF 645 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~--------------------------------~~~~------------~~~~~---~~vsl~f 645 (721)
+.|++++||+.+.+-.. .++. +.+|. -.+.+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999998763110 0010 11221 1236899
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 646 SPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 646 Spdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
||||++|++|+.||.+.+||.+. ..++.|..++..+.|||... ..+|+||-.
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~------Skvat~~w~ 496 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP------SKVATCGWD 496 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc------ceeEecccC
Confidence 99999999999999999999873 34677788999999999985 677777744
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=223.33 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=196.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|..+.|.+ +++.+++++.|.+|+.||+++|+.++.++ +|.+-|.++.-+.....++.||+.||++++||+++...
T Consensus 92 AVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~- 167 (338)
T KOG0265|consen 92 AVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA- 167 (338)
T ss_pred eeEeeeecc-CCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecccch-
Confidence 699999999 99999999999999999999999999888 89999999985545567889999999999999998443
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
...+....+++++.|...+..+++|+-|+.|++||++.+...+.+.| |...|+.+..+|+| ..+.+-+.
T Consensus 168 ---------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG-h~DtIt~lsls~~g-s~llsnsM 236 (338)
T KOG0265|consen 168 ---------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG-HADTITGLSLSRYG-SFLLSNSM 236 (338)
T ss_pred ---------hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec-ccCceeeEEeccCC-Cccccccc
Confidence 33455556789999999999999999999999999999999999998 99999999999999 79999999
Q ss_pred CCcEEEEECCCC----CceeEEEecCCCCe---EEEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEE
Q 004969 615 DQDVKLWDLRQK----PIQPCYTASSSKGN---VMVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYT 683 (721)
Q Consensus 615 DgtIrIWDlrs~----~~~~~~~~~~~~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~f 683 (721)
|.++++||+|-. ++..++....|.-. ..++|+|+++++.+|+.|..+++||...+. +.+|.+.|.++.|
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF 316 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee
Confidence 999999999853 23334433333222 278999999999999999999999988543 5678899999999
Q ss_pred CCCCCcccccccEEEEecCC
Q 004969 684 RPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 684 sP~~~~~~v~v~lLASgs~~ 703 (721)
||.. ++|.+|+..
T Consensus 317 hp~e-------~iils~~sd 329 (338)
T KOG0265|consen 317 HPTE-------PIILSCSSD 329 (338)
T ss_pred cCCC-------cEEEEeccC
Confidence 9999 999999887
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=213.82 Aligned_cols=226 Identities=14% Similarity=0.229 Sum_probs=196.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|..++..| +++.||+|+.. .||+||+.++.. +.++. +|.+.|++|.|. .+++++++||.||+++|||++...
T Consensus 42 qVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e--~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 42 QVNRLEITP-DKKDLAAAGNQ-HVRLYDLNSNNPNPVATFE--GHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred ceeeEEEcC-CcchhhhccCC-eeEEEEccCCCCCceeEEe--ccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc
Confidence 489999999 88999998866 599999998764 66666 999999999997 899999999999999999999833
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. ...+.+..+|+++..||....++++..+|.|++||+.+......+...-...|.+++..|+| ..++.+
T Consensus 117 ~----------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~ 185 (311)
T KOG0315|consen 117 C----------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAA 185 (311)
T ss_pred c----------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEe
Confidence 2 34567778999999999999999999999999999998877777664456789999999999 799999
Q ss_pred ECCCcEEEEECCCC----CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-----cccccccCeEEEE
Q 004969 613 SFDQDVKLWDLRQK----PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-----PFRDFNMSILAAY 682 (721)
Q Consensus 613 s~DgtIrIWDlrs~----~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-----~l~~~~~~V~~v~ 682 (721)
...|..++|++-+. ...|+.++..|.+.+ .+.+|||++||++++.|.+++||+..+- .+.+|+..+...+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999998764 345677788888877 8999999999999999999999998843 3456677999999
Q ss_pred ECCCCCcccccccEEEEecCC
Q 004969 683 TRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs~~ 703 (721)
||.++ ..|++|+..
T Consensus 266 FS~dg-------~YlvTassd 279 (311)
T KOG0315|consen 266 FSADG-------EYLVTASSD 279 (311)
T ss_pred eccCc-------cEEEecCCC
Confidence 99999 899999876
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=223.15 Aligned_cols=215 Identities=18% Similarity=0.306 Sum_probs=187.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-|+|+++.| ...++++|+.|++|+|||+.+|+...++. ||...|..++++ +...++++++.|+.|+.||++..+.
T Consensus 153 WVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS-~rHpYlFs~gedk~VKCwDLe~nkv- 227 (460)
T KOG0285|consen 153 WVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVS-KRHPYLFSAGEDKQVKCWDLEYNKV- 227 (460)
T ss_pred eEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec--chhheeeeeeec-ccCceEEEecCCCeeEEEechhhhh-
Confidence 599999999 78999999999999999999999998887 999999999998 6678999999999999999998654
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
+... ..|-..|.+++.+|..+.++++|.|.++|+||+++...+..+.| |..+|.++.+.|..| .+++||.
T Consensus 228 IR~Y--------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dp-qvit~S~ 297 (460)
T KOG0285|consen 228 IRHY--------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDP-QVITGSH 297 (460)
T ss_pred HHHh--------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCC-ceEEecC
Confidence 2222 23446789999999999999999999999999999999999998 999999999999884 8999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~ 687 (721)
|++|++||++.++. ..++..|...+ +++.+|....+++++.| .|+-|++... .+.+|..-++.++-..++
T Consensus 298 D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred CceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc
Confidence 99999999999854 55666777777 89999998888888854 6899998732 245667788888888876
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.2e-24 Score=239.93 Aligned_cols=228 Identities=19% Similarity=0.341 Sum_probs=186.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|.++.|+| +|..+++++.|+.+++|+..+++ ....+ .+|...|.+++|+ +++.++++|+.|++|+|||+....
T Consensus 161 sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEEC-CCCcEEEEecCCceEEEeeccCCC
Confidence 589999999 99999999999999999997777 55555 3899999999998 789999999999999999995533
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
..+.. ...|...|++++|+|.++.+++|+.|++|++||+++++++..+.+ |...|++++|++++ ++++++
T Consensus 237 ~~~~~--------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~-~~l~s~ 306 (456)
T KOG0266|consen 237 RNLKT--------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDG-NLLVSA 306 (456)
T ss_pred eEEEE--------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCC-CEEEEc
Confidence 32222 225667889999999999999999999999999999999999997 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCe--E-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccC---eEEEE
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGN--V-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMS---ILAAY 682 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~--v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~---V~~v~ 682 (721)
+.|+.|++||+.++.......+..+... + ++.|+|++.++++++.|+.+++||++ +.. +.+|... +....
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 9999999999999863223344444444 4 89999999999999999999999998 332 4444332 33334
Q ss_pred ECCCCCcccccccEEEEecCC
Q 004969 683 TRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs~~ 703 (721)
.++.+ ..+.+|+..
T Consensus 387 ~~~~~-------~~i~sg~~d 400 (456)
T KOG0266|consen 387 LSTGG-------KLIYSGSED 400 (456)
T ss_pred ccCCC-------CeEEEEeCC
Confidence 45555 677777765
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-23 Score=206.93 Aligned_cols=235 Identities=12% Similarity=0.176 Sum_probs=195.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
++..++|+|-.|..||+++.|..|+||+...+ .+...+.. +|+..|.+++|+ |.+++|++||.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWS-PHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeec-CCCcEEEEeeccceEEEeecCCC
Confidence 69999999943789999999999999999843 34444443 899999999998 78899999999999999988764
Q ss_pred CCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCc
Q 004969 532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.-. ....+ .|...|-+++|+++|.++++++.|+.|.||.+..+ +++..+++ |...|..+.|+|.. .
T Consensus 94 efe--------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~-HtqDVK~V~WHPt~-d 163 (312)
T KOG0645|consen 94 EFE--------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE-HTQDVKHVIWHPTE-D 163 (312)
T ss_pred cee--------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc-ccccccEEEEcCCc-c
Confidence 431 12223 35567999999999999999999999999999854 46677776 99999999999987 7
Q ss_pred EEEEEECCCcEEEEECC-CCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECC
Q 004969 608 IFATSSFDQDVKLWDLR-QKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRP 685 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP 685 (721)
+|+++|.|.+|++|+-. ......+.++.+|...+ +++|++.|..|++++.|++++||......-..|...+..++|.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~- 242 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD- 242 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-
Confidence 99999999999999887 55567788889998777 9999999999999999999999997644444556788889998
Q ss_pred CCCcccccccEEEEecCCCccccCC
Q 004969 686 SSKSEIVKVNLLASTDHCDKECSHG 710 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~~ke~s~~ 710 (721)
+ .+|||+++..+...+.
T Consensus 243 ~--------~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 243 N--------GVIASGGGDDAIRLFK 259 (312)
T ss_pred c--------cceEeccCCCEEEEEE
Confidence 3 5889998875554443
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-24 Score=232.72 Aligned_cols=225 Identities=20% Similarity=0.346 Sum_probs=201.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|.++.+|| ...+++++-..|.|.|||.++...++.+.. ..-+|.+..|- ...+++++|++|..||||+..++..
T Consensus 15 RVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ek- 89 (794)
T KOG0276|consen 15 RVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEK- 89 (794)
T ss_pred ceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheee-eccceEEEecCCceEEEEeccccee-
Confidence 799999999 889999999999999999999999998874 45789999998 6789999999999999999999664
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
+..|. |.+.|.+++.||..++++++++|-+|++||... ..+.++|.| |...|.+++|+|..++.+|++
T Consensus 90 ---------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 90 ---------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ---------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cceEEEEEEecCCCccceeee
Confidence 44443 567799999999999999999999999999985 467889997 999999999999999999999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--CCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--DHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRP 685 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--g~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP 685 (721)
+-|++|+||.+.+. .+.+++.+|...+ ++.|-+- -.||++|+.|..++|||.+.+ ++.+|...|..+.|||
T Consensus 160 sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 99999999999876 5688888998887 8999874 479999999999999999843 4778888999999999
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
.- |+++|||..
T Consensus 238 ~l-------piiisgsED 248 (794)
T KOG0276|consen 238 EL-------PIIISGSED 248 (794)
T ss_pred CC-------cEEEEecCC
Confidence 99 999999987
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.8e-24 Score=238.36 Aligned_cols=228 Identities=18% Similarity=0.341 Sum_probs=190.5
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEEC-CCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl-~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
..|+.++|+| ++.++++|+.|++|+|||+ ..+..++++. +|...|++++|+ +.++.+++|+.|++|+|||+++++
T Consensus 204 ~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 204 RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCe
Confidence 4699999999 9999999999999999999 5568888888 999999999999 455999999999999999999955
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCC--CeEEEEEcCCCCcE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKE--HINVVKFSNHSPSI 608 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~--~V~sI~fsPdg~~l 608 (721)
+. ...-.|.++|++++|++++..+++++.|+.|++||+.++. ++..+.+ +.. .+++++|+|++ .+
T Consensus 280 ~~---------~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~-~~ 348 (456)
T KOG0266|consen 280 CV---------RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNG-KY 348 (456)
T ss_pred EE---------EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCC-cE
Confidence 41 2223455789999999999999999999999999999999 5677775 444 59999999999 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCC--CeEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---ccccc-ccCeEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK--GNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDF-NMSILAA 681 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~-~~~V~~v 681 (721)
+++++.|+.+++||++.+.....+...... ...+...++.|.++++|+.|+.|++|++. +. .+..| ...+..+
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL 428 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence 999999999999999988664444333222 11245567899999999999999999998 32 24556 6788999
Q ss_pred EECCCCCcccccccEEEEecCC
Q 004969 682 YTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+||.. +++++++..
T Consensus 429 ~~~~~~-------~~~~s~s~~ 443 (456)
T KOG0266|consen 429 SSHPTE-------NLIASSSFE 443 (456)
T ss_pred ccCCCc-------CeeeecCcC
Confidence 999999 999999854
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.5e-24 Score=221.12 Aligned_cols=230 Identities=17% Similarity=0.293 Sum_probs=194.2
Q ss_pred ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
+..|+.+-|+| +-.++++++.|++|++||..+|++...++ ||.++|.+|.|. ..+.++++++.|-.+++||..+..
T Consensus 108 r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 108 RSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLR--GHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhh--ccccceeEEEEe-cCccEEEecCCccchhheeHHHHH
Confidence 34699999999 88899999999999999999999988888 999999999998 889999999999999999998843
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----------------------
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---------------------- 590 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---------------------- 590 (721)
....... .|...|.++.|-|.|+++++++.|.+|+.|++.+|-++.+|.+
T Consensus 184 ~c~ks~~--------gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 184 RCIKSLI--------GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHHHHhc--------CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 3333222 3445679999999999999999999999999999887776653
Q ss_pred -------------------ccCCCeEEEEEcCC--------------CCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969 591 -------------------MHKEHINVVKFSNH--------------SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS 637 (721)
Q Consensus 591 -------------------~h~~~V~sI~fsPd--------------g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~ 637 (721)
.|..+|-+++|-|. ++.++++++.|++||+||+.++.+ ++++.+|
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~gh 333 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGH 333 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--EEEEecc
Confidence 14455667777654 124788899999999999999844 8889999
Q ss_pred CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..++ .++|+|.|+||++...|+++++||++. +.+..|..-|.++.||-+. ++++||+-.
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~-------p~VvTGsVd 397 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA-------PYVVTGSVD 397 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC-------ceEEecccc
Confidence 9999 899999999999999999999999983 2355677889999999998 899999875
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=4e-24 Score=236.75 Aligned_cols=244 Identities=18% Similarity=0.232 Sum_probs=202.4
Q ss_pred ccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeC
Q 004969 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD 519 (721)
Q Consensus 442 ~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~ 519 (721)
..||.+ .|.++.... +|.+|++|+.|.++++|.++++.. ...-+..+|.+.|.+|+++.....+|+++|.
T Consensus 361 i~GH~e-------~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 361 IPGHTE-------AVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred EeCchh-------heeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 356666 477787444 568999999999999998854332 2222335999999999998777789999999
Q ss_pred CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
|+++++|++...+..-....-........|...|++++++|++..+++||.|++.+||++...+...++.| |...|.+|
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V 511 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCV 511 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-CccceEEE
Confidence 99999999987433211111111112335778899999999999999999999999999999999999998 99999999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----ccccc
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDF 674 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~ 674 (721)
.|+|.. .+++|+|.|++|+||.+.+..| +.++.||...+ .+.|-.+|..|++++.||-+++|+++.. .+-.|
T Consensus 512 ~Fs~~d-q~laT~SgD~TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 512 SFSKND-QLLATCSGDKTVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred Eecccc-ceeEeccCCceEEEEEecccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 999998 8999999999999999999866 67788999888 8999999999999999999999999843 46778
Q ss_pred ccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969 675 NMSILAAYTRPSSKSEIVKVNLLASTDHCD 704 (721)
Q Consensus 675 ~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ 704 (721)
...|.+++.+|.. .+++||+...
T Consensus 589 ~DrvWaL~~~~~~-------~~~~tgg~Dg 611 (775)
T KOG0319|consen 589 NDRVWALSVSPLL-------DMFVTGGGDG 611 (775)
T ss_pred cceeEEEeecCcc-------ceeEecCCCe
Confidence 8999999999999 8899888763
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=4.1e-23 Score=248.78 Aligned_cols=227 Identities=21% Similarity=0.280 Sum_probs=188.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+|.++.++++|+.||+|++||+.+++.+..+. +|.+.|++++|+|.++.+|++|+.||+|++||+.++..
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~- 610 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS- 610 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-
Confidence 578999998678999999999999999999998888876 89999999999977889999999999999999987543
Q ss_pred ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
...+.+...|.++.|++ ++..+++|+.||.|++||+++++ .+..+.+ |...|.++.|. ++ ..++++
T Consensus 611 ---------~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~-~~lvs~ 678 (793)
T PLN00181 611 ---------IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DS-STLVSS 678 (793)
T ss_pred ---------EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CC-CEEEEE
Confidence 22333445789999954 57889999999999999999865 5666775 99999999997 45 689999
Q ss_pred ECCCcEEEEECCCCC----ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Ccc---------------
Q 004969 613 SFDQDVKLWDLRQKP----IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPF--------------- 671 (721)
Q Consensus 613 s~DgtIrIWDlrs~~----~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l--------------- 671 (721)
+.|++|++||++... ..++..+.+|...+ .++|+|++.+|++|+.|+.|++|+... .+.
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 999999999998531 23456777887776 899999999999999999999999652 111
Q ss_pred -cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 672 -RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 672 -~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+...|.++.|+|++ ..|++|+..
T Consensus 759 ~~~~~~~V~~v~ws~~~-------~~lva~~~d 784 (793)
T PLN00181 759 VDDASQFISSVCWRGQS-------STLVAANST 784 (793)
T ss_pred cCCCCcEEEEEEEcCCC-------CeEEEecCC
Confidence 1223468999999999 889988876
No 26
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=8.2e-23 Score=231.38 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=169.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|++++|+|.++++|++|+.||+|++||+.++. .+..+. +|...|.+++|+|..+++|++|+.|++|+|||
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 699999999778899999999999999997653 344554 89999999999965568999999999999999
Q ss_pred cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC-eEEEEEcCCC
Q 004969 528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHS 605 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~-V~sI~fsPdg 605 (721)
+.+++. ...+ .|...|.+++|+|++..+++++.|++|++||+++++.+..+.+ |.+. +..+.|.+++
T Consensus 155 l~tg~~----------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 155 VERGKA----------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRK 223 (493)
T ss_pred CCCCeE----------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCC
Confidence 988543 1222 3556799999999999999999999999999999999988886 7654 4567899987
Q ss_pred CcEEEEEE----CCCcEEEEECCCCCceeEEEe--cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC-Ccccc----
Q 004969 606 PSIFATSS----FDQDVKLWDLRQKPIQPCYTA--SSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG-DPFRD---- 673 (721)
Q Consensus 606 ~~lLaSgs----~DgtIrIWDlrs~~~~~~~~~--~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g-~~l~~---- 673 (721)
..+++++ .|+.|++||+++... +.... ..........|++++.+|++|+ .|+.|++||+.. ..+..
T Consensus 224 -~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 224 -DLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred -CeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 4555543 489999999997532 22222 2222333678999999999887 599999999983 32221
Q ss_pred cccCeEEEEECCCCCc
Q 004969 674 FNMSILAAYTRPSSKS 689 (721)
Q Consensus 674 ~~~~V~~v~fsP~~~~ 689 (721)
...++.++.|.|...+
T Consensus 302 s~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 302 SVEPHKGLCMMPKWSL 317 (493)
T ss_pred CCCCCcceEecccccc
Confidence 1235667778776543
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=212.27 Aligned_cols=225 Identities=19% Similarity=0.291 Sum_probs=183.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|..+.|+| +|..+|+|+.|..|.+|++. |.+.......+|.++|..+.|. .+++.++++|.|.+|+.||+++++..
T Consensus 49 eI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 49 EIYTIKFHP-DGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred eEEEEEECC-CCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeec-cCCCEEEEecCCceEEEEecccceee
Confidence 489999999 99999999999999999975 4444444444999999999998 89999999999999999999998762
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
..+.+ |..-|++++-...|..++.++ .|+++++||+|+...++++. .+..++++.|..++ ..+.+|+
T Consensus 126 -rk~k~--------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s-~qv~sgg 193 (338)
T KOG0265|consen 126 -RKHKG--------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTS-DQVISGG 193 (338)
T ss_pred -ehhcc--------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccc-cceeecc
Confidence 11222 223456676555666666554 68999999999999999887 57789999999888 7899999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC----CCc-c-------cccccCeEE
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR----GDP-F-------RDFNMSILA 680 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~-l-------~~~~~~V~~ 680 (721)
-|+.|++||+|.+.. .+.+.+|...+ .+..+|+|.++.+-+.|.++++||++ +.+ + ..|+.....
T Consensus 194 Idn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999999998854 78888999888 89999999999999999999999998 222 2 223456777
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+|+|++ ..+..|+..
T Consensus 272 cswsp~~-------~~i~ags~d 287 (338)
T KOG0265|consen 272 CSWSPNG-------TKITAGSAD 287 (338)
T ss_pred eeccCCC-------Ccccccccc
Confidence 8999998 555555544
No 28
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=231.74 Aligned_cols=221 Identities=12% Similarity=0.153 Sum_probs=169.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
.|.+++|+|.++.+|++|+.||+|+|||+.++. .+..+. +|...|.+++|+|.....+++|+.||+|++|
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~--gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK--GHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee--cCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 599999999658999999999999999997642 223344 8999999999995444567899999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE-----EEE
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV-----VKF 601 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s-----I~f 601 (721)
|+++++. ...+.+...|.+++|+++|..+++++.|+.|++||+++++.+.++.+ |.+.+.+ ..|
T Consensus 154 Dl~tg~~----------~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~f 222 (568)
T PTZ00420 154 DIENEKR----------AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGL 222 (568)
T ss_pred ECCCCcE----------EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeE
Confidence 9998653 22334556799999999999999999999999999999999999986 8876543 335
Q ss_pred cCCCCcEEEEEECCC----cEEEEECCC-CCceeEEEecCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEEcCCCcc---c
Q 004969 602 SNHSPSIFATSSFDQ----DVKLWDLRQ-KPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGSGTSMFVQSLRGDPF---R 672 (721)
Q Consensus 602 sPdg~~lLaSgs~Dg----tIrIWDlrs-~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~Dg~I~VWDl~g~~l---~ 672 (721)
++++ .++++++.|+ +|+|||+++ ..+.....+..+.+.+...|. ++|.++++|+.|+.|++|++....+ .
T Consensus 223 s~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 223 GGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred cCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 5787 6777777664 799999995 434434445555555444444 4688999999999999999974332 2
Q ss_pred c--cccCeEEEEECCCCCc
Q 004969 673 D--FNMSILAAYTRPSSKS 689 (721)
Q Consensus 673 ~--~~~~V~~v~fsP~~~~ 689 (721)
. +..++.+++|.|...+
T Consensus 302 ~~~s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 302 EYKSCSPFRSFGFLPKQIC 320 (568)
T ss_pred ccccCCCccceEEcccccc
Confidence 2 2356788999998763
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=203.39 Aligned_cols=217 Identities=17% Similarity=0.229 Sum_probs=183.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+.-+|++++.|.+||+|...+|.+..+++ ...+.|..+... +++..|++|+.- .||+||++++.+ ...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~np--------~Pv 76 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNNP--------NPV 76 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEc-CCcchhhhccCC-eeEEEEccCCCC--------Cce
Confidence 34789999999999999999999999998 345789999997 788888887765 899999999765 235
Q ss_pred eEeccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969 545 VTFDEF-DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 545 ~~~~~~-~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl 623 (721)
.+|..+ ..|+++.|+.+|..+++||.||+++|||++.....+.+. |..+|+++..+|+. .-|++|..+|.|++||+
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQ-teLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDL 153 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCc-ceEEeecCCCcEEEEEc
Confidence 556544 679999999999999999999999999999988778887 88999999999998 68999999999999999
Q ss_pred CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC----------cccccccCeEEEEECCCCCccccc
Q 004969 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD----------PFRDFNMSILAAYTRPSSKSEIVK 693 (721)
Q Consensus 624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~----------~l~~~~~~V~~v~fsP~~~~~~v~ 693 (721)
+...+.............+++..|||.+++++...|..++|++-++ +++.|...+....+||++
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~------ 227 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV------ 227 (311)
T ss_pred cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC------
Confidence 9875543333333333338999999999999999999999998643 255567889999999999
Q ss_pred ccEEEEecCC
Q 004969 694 VNLLASTDHC 703 (721)
Q Consensus 694 v~lLASgs~~ 703 (721)
..||++|..
T Consensus 228 -k~lat~ssd 236 (311)
T KOG0315|consen 228 -KYLATCSSD 236 (311)
T ss_pred -cEEEeecCC
Confidence 999999987
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1e-22 Score=218.28 Aligned_cols=242 Identities=17% Similarity=0.205 Sum_probs=193.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
-|.|+.|+| ||.++++.+.||+|.+||-.+|+.+..+. ..+|.+.|.+++|+ |++..++|+|.|.+++|||+.+...
T Consensus 192 FV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 192 FVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred ceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccce
Confidence 599999999 89999999999999999999999999887 46899999999998 7999999999999999999997643
Q ss_pred ccccc-------------c---------------------cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 004969 534 SIRGM-------------H---------------------YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI 579 (721)
Q Consensus 534 ~~~~~-------------~---------------------~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl 579 (721)
..... . .....+...|...|+++..++++.+|++++.||.|.-||.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 11100 0 0111122347778999999999999999999999999998
Q ss_pred CCCcEEE-----------EEc-----------------------------------------------------------
Q 004969 580 NSGRRLQ-----------VFA----------------------------------------------------------- 589 (721)
Q Consensus 580 ~s~~~v~-----------~l~----------------------------------------------------------- 589 (721)
.+|..-+ .+.
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 7653211 000
Q ss_pred ---c-------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969 590 ---D-------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 590 ---~-------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D 658 (721)
. .-.-...+++++|++ ..++.|+.|+.|+||.+.............|.+.+ .++||||+.||+++...
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 0 001124578889988 79999999999999999986655554555566666 89999999999999999
Q ss_pred CcEEEEEcCCCccc----c-cccCeEEEEECCCCCcccccccEEEEecCCCcc
Q 004969 659 TSMFVQSLRGDPFR----D-FNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 706 (721)
Q Consensus 659 g~I~VWDl~g~~l~----~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke 706 (721)
+.+.+||+..+..+ . |...|.+++|+|+. .++||||..+-.
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n-------~~vATGSlDt~V 554 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN-------KLVATGSLDTNV 554 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEEEeCCCc-------eEEEeccccceE
Confidence 99999999854322 2 46789999999999 899999998543
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=3.3e-22 Score=204.09 Aligned_cols=224 Identities=25% Similarity=0.373 Sum_probs=186.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||.|++|++.+++....+. +|...+..+.|+ ++++.+++++.||.|++||+.+++..
T Consensus 11 ~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 11 GVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred CEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccce
Confidence 599999999 89999999999999999999888777666 788889999998 56789999999999999999875331
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....+...+.++.|++++..+++++.|+.+++||+++++....+.. |...+.+++|+|++ .++++++.
T Consensus 87 ---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~ 155 (289)
T cd00200 87 ---------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDG-TFVASSSQ 155 (289)
T ss_pred ---------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcC-CEEEEEcC
Confidence 11113445799999999877777777799999999999998888886 99999999999997 78888888
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~ 689 (721)
|+.|++||+++++. ...+..+...+ ++.|+|+++.+++++.++.+++||++ +.. +..+...+.++.|+|++
T Consensus 156 ~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-- 231 (289)
T cd00200 156 DGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-- 231 (289)
T ss_pred CCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC--
Confidence 99999999997754 33444565455 89999999999999999999999997 333 33456689999999997
Q ss_pred ccccccEEEEecC
Q 004969 690 EIVKVNLLASTDH 702 (721)
Q Consensus 690 ~~v~v~lLASgs~ 702 (721)
.++++++.
T Consensus 232 -----~~~~~~~~ 239 (289)
T cd00200 232 -----YLLASGSE 239 (289)
T ss_pred -----cEEEEEcC
Confidence 77777763
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-23 Score=234.09 Aligned_cols=228 Identities=14% Similarity=0.256 Sum_probs=199.7
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+|..++||| ...+++++-..|.|++||..-+.++..+. +|.++|.+++|+ +...+++|||+|-.|+||+..+.++
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhh--ccCCccceeeec-CCCCeEEecCCccEEEEEeccccee
Confidence 4799999999 88999999999999999999999998887 899999999999 6888999999999999999998766
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
... -..|-+.|..+.||+.-++|+++++|.+|+||+..+++++..+.| |...|.|.+|+|.. .+++++|
T Consensus 86 lft---------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-HnHYVMcAqFhptE-DlIVSaS 154 (1202)
T KOG0292|consen 86 LFT---------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-HNHYVMCAQFHPTE-DLIVSAS 154 (1202)
T ss_pred hhh---------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-CceEEEeeccCCcc-ceEEEec
Confidence 321 224557789999999999999999999999999999999999998 99999999999987 6999999
Q ss_pred CCCcEEEEECCCCC---------------------------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 614 FDQDVKLWDLRQKP---------------------------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 614 ~DgtIrIWDlrs~~---------------------------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
-|.+|||||+..-+ ....+.+.||...+ -++|+|.-..+++|+.|..|++|.
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 99999999985310 11123456776666 689999999999999999999999
Q ss_pred cCC------CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 666 LRG------DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 666 l~g------~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
... +..++|...|.++-|||.. ++|.|.|..
T Consensus 235 mnetKaWEvDtcrgH~nnVssvlfhp~q-------~lIlSnsED 271 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRGHYNNVSSVLFHPHQ-------DLILSNSED 271 (1202)
T ss_pred eccccceeehhhhcccCCcceEEecCcc-------ceeEecCCC
Confidence 862 4588999999999999998 888888876
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.9e-23 Score=232.50 Aligned_cols=227 Identities=19% Similarity=0.323 Sum_probs=193.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|+.+.||| .+.++++|++|-.|+||+..+.+++.++. ||.+.|..+.|+ +.-.+++|+|+|.||+||+..++++
T Consensus 53 pVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~--GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~- 127 (1202)
T KOG0292|consen 53 PVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLL--GHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKC- 127 (1202)
T ss_pred ccceeeecC-CCCeEEecCCccEEEEEecccceehhhhc--cccceeEEeecc-CCCceEEEccCCCeEEEEeccCCce-
Confidence 699999999 89999999999999999999999998887 999999999998 6778999999999999999998765
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--------C-------------------c-EE-
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--------G-------------------R-RL- 585 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--------~-------------------~-~v- 585 (721)
+..++ .|...|+|..|||..+.+++++-|.+||+||+.. + . .+
T Consensus 128 iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 128 IAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 22222 3445689999999999999999999999999862 1 0 11
Q ss_pred EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
+.+.| |...|+-++|+|.- -++++|++|+.|++|.+...+.-.+-+..+|.+.+ ++-|+|....+++.|.|++|+||
T Consensus 200 ~VLEG-HDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 200 HVLEG-HDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeecc-cccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 23444 99999999999998 59999999999999999876555566778999988 89999999999999999999999
Q ss_pred EcCCCc----ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 665 SLRGDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 665 Dl~g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+..++ ++.-+..-+.++-||.. +++|.|.-.
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~l-------NLfAAgHDs 313 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPEL-------NLFAAGHDS 313 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCc-------ceeeeecCC
Confidence 998443 33336678889999999 999988765
No 34
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=6.3e-23 Score=217.61 Aligned_cols=227 Identities=18% Similarity=0.261 Sum_probs=185.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEE------Ee----ecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVS------YI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~------~l----~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt 522 (721)
.|.+.+|+|....++++|+.|-+.++|++.. ..... .+ +.......|++++|+ .+|+.|++|+.||.
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn-~~G~~LatG~~~G~ 258 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN-NDGTLLATGSEDGE 258 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-CCCCeEEEeecCcE
Confidence 5899999997767999999999999999864 11111 11 111224679999998 89999999999999
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE------------------
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------------------ 584 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~------------------ 584 (721)
+++|+...... ..--.|.++|.++.|+..|.+|++++.|+++.+||..+|+.
T Consensus 259 ~riw~~~G~l~----------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 259 ARIWNKDGNLI----------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS 328 (524)
T ss_pred EEEEecCchhh----------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence 99999987432 11224678999999999999999999999999999866532
Q ss_pred -----------------------EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE
Q 004969 585 -----------------------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV 641 (721)
Q Consensus 585 -----------------------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v 641 (721)
+.++.+ |.+.|.++.|+|.| .+|+++|.|++++||......+ ...+..|...+
T Consensus 329 ~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei 404 (524)
T KOG0273|consen 329 NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEI 404 (524)
T ss_pred CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc--hhhhhhhccce
Confidence 234556 99999999999999 8999999999999999887644 56677787666
Q ss_pred -EEEEecCC---------CEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 642 -MVCFSPDD---------HYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 642 -sl~fSpdg---------~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+.|+|+| ..+++++.|++|++||+. |.+ +..|+.+|.+++|+|++ ..+|+|+..
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-------~ylAsGs~d 473 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-------RYLASGSLD 473 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-------cEEEecCCC
Confidence 89999865 478999999999999987 544 55668899999999999 999999987
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=3.6e-22 Score=240.65 Aligned_cols=227 Identities=18% Similarity=0.228 Sum_probs=183.0
Q ss_pred ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----e----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----N----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
...|.+++|+| +++++|+|+.||.|+||+.... . ....+ .+...|.+++|++..+.+|++++.||+|+
T Consensus 483 ~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 483 SNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 34699999999 9999999999999999997532 1 11222 33468999999977789999999999999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
+||+.+++.. .....|...|++++|+| ++..+++|+.||+|++||++++..+..+. +...|.++.|++
T Consensus 559 lWd~~~~~~~---------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~ 627 (793)
T PLN00181 559 VWDVARSQLV---------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPS 627 (793)
T ss_pred EEECCCCeEE---------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeC
Confidence 9999875431 11124567899999997 56789999999999999999999988887 446899999966
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-------C---ccc
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-------D---PFR 672 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-------~---~l~ 672 (721)
..+.++++|+.||.|++||+++.. .+...+.+|...+ .+.|. ++.++++++.|+.|++||++. . .+.
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 544899999999999999998754 2345566777777 78997 788999999999999999862 2 244
Q ss_pred ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 ~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|...+..+.|+|++ .+||+|+..
T Consensus 706 gh~~~i~~v~~s~~~-------~~lasgs~D 729 (793)
T PLN00181 706 GHTNVKNFVGLSVSD-------GYIATGSET 729 (793)
T ss_pred CCCCCeeEEEEcCCC-------CEEEEEeCC
Confidence 566678899999999 899999865
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1.1e-21 Score=200.16 Aligned_cols=224 Identities=23% Similarity=0.289 Sum_probs=186.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.++.|+| +++++++++.||.|++|++.+++....+. .|...|.++.|+ +++.++++++.||.|++||+.+++.
T Consensus 53 ~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~- 127 (289)
T cd00200 53 PVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKC- 127 (289)
T ss_pred ceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEE-
Confidence 467999999 77899999999999999999887777776 788899999998 5577888888899999999986443
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
...+ .+...+.+++|+|++..+++++.|+.|++||+++++.+..+.. |...+.++.|+|++ ..+++++
T Consensus 128 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~ 196 (289)
T cd00200 128 ---------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG-EKLLSSS 196 (289)
T ss_pred ---------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec-CccccceEEECCCc-CEEEEec
Confidence 1122 3556799999999877777777799999999999998888886 88899999999998 7888888
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~ 688 (721)
.|+.|++||+++++. ...+..+...+ +++|+|++.++++++.+|.+++|++. +.+ +..+...+.++.|+|++
T Consensus 197 ~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 273 (289)
T cd00200 197 SDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG- 273 (289)
T ss_pred CCCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-
Confidence 899999999998644 44444555455 89999999999988889999999997 333 34556789999999998
Q ss_pred cccccccEEEEecCC
Q 004969 689 SEIVKVNLLASTDHC 703 (721)
Q Consensus 689 ~~~v~v~lLASgs~~ 703 (721)
+.+++++..
T Consensus 274 ------~~l~~~~~d 282 (289)
T cd00200 274 ------KRLASGSAD 282 (289)
T ss_pred ------CEEEEecCC
Confidence 888888765
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=9.5e-24 Score=216.15 Aligned_cols=207 Identities=14% Similarity=0.242 Sum_probs=171.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.|+.|.. ..+++|+.|.+|+|||+++|+++.++- +|..+|..+.|+ +.+++++|.|.++.+||+......
T Consensus 239 SVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tli--hHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 239 SVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLI--HHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred cEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHh--hhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHH
Confidence 688999976 799999999999999999999998876 888999999986 578999999999999999874421
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
. ...+-..|...|+.+.| ++.++++++.|.+|++|++.+++.++++.+ |...|.|+++. | +++++|+.
T Consensus 311 -t-----~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQYr--~-rlvVSGSS 378 (499)
T KOG0281|consen 311 -T-----LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQYR--D-RLVVSGSS 378 (499)
T ss_pred -H-----HHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhc-ccccceehhcc--C-eEEEecCC
Confidence 0 11122345567899998 567999999999999999999999999997 99999999985 4 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--c-----------ccccccCeEE
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--P-----------FRDFNMSILA 680 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~-----------l~~~~~~V~~ 680 (721)
|.+||+||+..|.+ +..+.||..-+ ++.| |.+.+++|+.||+|+|||+... + +..|.+.|..
T Consensus 379 DntIRlwdi~~G~c--LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 379 DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred CceEEEEeccccHH--HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 99999999999976 45567888888 8888 4788999999999999998721 1 2345667888
Q ss_pred EEECC
Q 004969 681 AYTRP 685 (721)
Q Consensus 681 v~fsP 685 (721)
+.|..
T Consensus 455 LQFD~ 459 (499)
T KOG0281|consen 455 LQFDE 459 (499)
T ss_pred Eeecc
Confidence 87743
No 38
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=203.65 Aligned_cols=196 Identities=17% Similarity=0.199 Sum_probs=173.6
Q ss_pred ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
..++.|+.|-+ | ..|++|+.|.+..+||+++|+.+..+. ||.+.|.+++++|.+++.+++|+.|++.++||++.+.
T Consensus 145 tgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 145 TGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQTQVFH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cceeEEEEEcC-C-CceEecCCCceEEEEEcccceEEEEec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 34789999988 4 678999999999999999999999988 9999999999986699999999999999999999975
Q ss_pred CcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEE
Q 004969 533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLa 610 (721)
. ...| .|...|++|.|+|+|.-|++|++|+++|+||+|..+.+..+.. .-..+|++++|+..| ++|.
T Consensus 221 c----------~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG-RlLf 289 (343)
T KOG0286|consen 221 C----------VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG-RLLF 289 (343)
T ss_pred e----------eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc-cEEE
Confidence 4 2233 4557799999999999999999999999999999999988873 124589999999999 8999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
+|..|.++.+||.-.++ .+-.+.+|...+ ++..+|||.-+++|+.|..++||.
T Consensus 290 agy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999998774 466677999888 899999999999999999999994
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.9e-22 Score=222.11 Aligned_cols=216 Identities=17% Similarity=0.306 Sum_probs=188.6
Q ss_pred CeEEEEEeCCCCCEEEEEECC-CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLD-GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D-G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
+|..++|+. .|++||.|+.. |.+.||++++...+...+ +|...+++++++ +++.+++||+.||.|+|||...+-+
T Consensus 309 ~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 309 KILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred eeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceE
Confidence 588899999 89999998875 899999999887776655 999999999998 7999999999999999999998654
Q ss_pred cccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
.++|. |...|+.+.|+..++.+++++-||+||.||+...+..++|.....-...+++..|.| .++..|
T Consensus 385 ----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG-elV~AG 453 (893)
T KOG0291|consen 385 ----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG-ELVCAG 453 (893)
T ss_pred ----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC-CEEEee
Confidence 56664 557799999999999999999999999999999999999997566778899999999 688888
Q ss_pred ECCCc-EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--ccc--ccccCeEEEEECCC
Q 004969 613 SFDQD-VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFR--DFNMSILAAYTRPS 686 (721)
Q Consensus 613 s~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~--~~~~~V~~v~fsP~ 686 (721)
+.|.. |.+|++.+|+. +-.+.||.+++ +++|+|+|..|++|+.|.+|++||+-+. ... .+...+..++|+|+
T Consensus 454 ~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred ccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 88764 99999999955 56678999999 7999999999999999999999998643 333 33568999999999
Q ss_pred C
Q 004969 687 S 687 (721)
Q Consensus 687 ~ 687 (721)
|
T Consensus 532 G 532 (893)
T KOG0291|consen 532 G 532 (893)
T ss_pred C
Confidence 9
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=201.66 Aligned_cols=230 Identities=22% Similarity=0.384 Sum_probs=184.1
Q ss_pred EEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 457 RQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.++.|||.-.++||++. ..|++.|.++..++-+.......-.+.+.+|+|++...+.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889997667776654 36899999997665555555445678999999998889999999999999999965
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.....+... ..|...|.++.|++.. ..+++++.|++|++||...++.+++|.+ |...|...+|+|..+++
T Consensus 92 ~~s~Pi~~~--------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 92 MPSKPIHKF--------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNL 162 (311)
T ss_pred CCCcchhHH--------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCe
Confidence 543322222 1355678999998865 4566677899999999999999999998 99999999999999999
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCC-CeEEEEEec-CCCEEEEEeCCCcEEEEEcCC--Cc---ccccccCeEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSP-DDHYLLGKGSGTSMFVQSLRG--DP---FRDFNMSILAA 681 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~g--~~---l~~~~~~V~~v 681 (721)
++++|.|+++++||++.... ...++.|. .+.++.|+. +...++||+.|+.|++||++. .| +.+|+..|..+
T Consensus 163 fas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv 240 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV 240 (311)
T ss_pred EEEccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE
Confidence 99999999999999997532 22255666 444999998 667889999999999999982 22 56677899999
Q ss_pred EECCCCCcccccccEEEEecCC
Q 004969 682 YTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|+|... .+|||++-.
T Consensus 241 k~Sph~~------~lLaSasYD 256 (311)
T KOG0277|consen 241 KFSPHHA------SLLASASYD 256 (311)
T ss_pred ecCcchh------hHhhhcccc
Confidence 9999874 788888764
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=201.83 Aligned_cols=237 Identities=20% Similarity=0.237 Sum_probs=197.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+. +|..+++|+.|+++.+|+++.++........+|.+.|-.++|.|+.++.+++++.|.+|++||++.+++.
T Consensus 22 ~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 22 KVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred cceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 588999999 9999999999999999999988777777778999999999999999999999999999999999988764
Q ss_pred ccccccCc-------------------------------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969 535 IRGMHYGA-------------------------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR 583 (721)
Q Consensus 535 ~~~~~~~~-------------------------------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~ 583 (721)
........ .....+....+..++|+-+++.|+....-|+|.|....+-+
T Consensus 101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 32221100 00111122346778888777888887778899998888889
Q ss_pred EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969 584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF 662 (721)
Q Consensus 584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~ 662 (721)
+++.++. |.....||.|+|+| ++||+|+.|..+-+||+..--| ...+..+.-++ .++||.||++||+|+.|..|-
T Consensus 181 pv~si~A-H~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC--~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 181 PVQSIKA-HPSNCICIEFDPDG-RYFATGSADALVSLWDVDELIC--ERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ccccccc-CCcceEEEEECCCC-ceEeeccccceeeccChhHhhh--heeeccccCceEEEEeccCcceeeccCccceEE
Confidence 9999996 99999999999999 8999999999999999987644 44555666677 899999999999999999998
Q ss_pred EEEcC-CCccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 663 VQSLR-GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 663 VWDl~-g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|=++. |+.+... .++...++|||.. ++||-+...
T Consensus 257 IA~vetGd~~~eI~~~~~t~tVAWHPk~-------~LLAyA~dd 293 (313)
T KOG1407|consen 257 IAEVETGDRVWEIPCEGPTFTVAWHPKR-------PLLAYACDD 293 (313)
T ss_pred eEecccCCeEEEeeccCCceeEEecCCC-------ceeeEEecC
Confidence 87776 6655433 6789999999999 999998877
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=196.20 Aligned_cols=226 Identities=17% Similarity=0.243 Sum_probs=184.0
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
+...|++++|+| .|++||+|+.|.++.||.-..+. ++.++. ||.+.|.+++|+ .++++||+|+.|+.|=||.+.
T Consensus 60 hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--GHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 60 HKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLE--GHENEVKCVAWS-ASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred chheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeee--ccccceeEEEEc-CCCCEEEEeeCCCeEEEEEec
Confidence 445799999999 99999999999999999987664 555565 999999999998 899999999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
.+..- ....+.-.|...|-.+.|||..+.+++++.|.+|++|+-. ...+++++.+ |...|.+++|+|.|
T Consensus 136 eddEf------ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G- 207 (312)
T KOG0645|consen 136 EDDEF------ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIG- 207 (312)
T ss_pred CCCcE------EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCC-
Confidence 64431 0112223455678999999999999999999999999876 3467889987 99999999999999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----------cccc
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----------FRDF 674 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----------l~~~ 674 (721)
..|++++.|++++||...+.- . ..|...+ .+.|. ...|++++.|+.|++|.....+ ...|
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~-----~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH 279 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDL-----S-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH 279 (312)
T ss_pred ceEEEecCCcceEeeeeccCc-----c-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc
Confidence 899999999999999977531 1 1233444 68887 6789999999999999765322 2345
Q ss_pred ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 675 NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 675 ~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
...|+++.|.|... +.|++|+..
T Consensus 280 e~dVNsV~w~p~~~------~~L~s~~DD 302 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVS------NRLASGGDD 302 (312)
T ss_pred ccccceEEEcCCCC------CceeecCCC
Confidence 67999999999632 888988875
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.5e-22 Score=217.46 Aligned_cols=227 Identities=15% Similarity=0.209 Sum_probs=190.8
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+|++..|-+ ..+++++|++|+.|+||+..+++.++.+. +|.+-|.+++.+ |...+++|+|+|-+|++||.+.+-.
T Consensus 56 ~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~Fe--AH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 56 VPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFE--AHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred cchhhheeee-ccceEEEecCCceEEEEecccceeeEEee--ccccceeeeeec-CCCCeEEecCCccEEEEeeccCcee
Confidence 3588888988 88999999999999999999999999998 899999999998 5667999999999999999988543
Q ss_pred cccccccCcceeEec-cCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC-CcEEE
Q 004969 534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-PSIFA 610 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg-~~lLa 610 (721)
. ...|. |...|++++|+|.+ +.|++++-|++|++|.+.+..+..++.+ |...|++|.|-+-| .-+++
T Consensus 132 ~---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 132 C---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred e---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEE
Confidence 2 33443 33458999999976 5688888899999999999999999997 99999999998765 24899
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRP 685 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP 685 (721)
||+.|.+|+|||..+..| +.++.+|...+ .+.|+|.-..+++|+.||+++||.-.. +.+.---..+.+++-++
T Consensus 202 sgaDD~tiKvWDyQtk~C--V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSC--VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred ecCCCceEEEeecchHHH--HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 999999999999999866 66788898888 799999999999999999999998652 11111134788888888
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
.. ..++.|.-.
T Consensus 280 ~~-------~~i~vG~De 290 (794)
T KOG0276|consen 280 GD-------GKIAVGFDE 290 (794)
T ss_pred CC-------CeEEEeccC
Confidence 87 556666554
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=5.1e-23 Score=211.79 Aligned_cols=187 Identities=17% Similarity=0.311 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir 575 (721)
+|.+.|.++++- |.+.+|++|+.|++|+|||+.+++.. ..+. .|...|..+++++..+++++++.|+.|+
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~Lk-ltlt--------Ghi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLK-LTLT--------GHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEE-Eeec--------chhheeeeeeecccCceEEEecCCCeeE
Confidence 999999999997 67899999999999999999998762 1122 2446689999999999999999999999
Q ss_pred EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEE
Q 004969 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLG 654 (721)
Q Consensus 576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Las 654 (721)
.||+...+.++.+.| |-+.|.+++.+|.- ..++||+.|.++||||+|+. ..++.+.+|...+ ++.+.|....+++
T Consensus 219 CwDLe~nkvIR~YhG-HlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHG-HLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred EEechhhhhHHHhcc-ccceeEEEeccccc-eeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEE
Confidence 999999999999997 99999999999988 79999999999999999998 5588889999998 8999999999999
Q ss_pred EeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 655 KGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 655 gs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+.|++|++||++ |+. +..|+.+|.++..||.. +++||++..
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-------~~fASas~d 340 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-------NLFASASPD 340 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCch-------hhhhccCCc
Confidence 9999999999998 554 44567899999999998 888888875
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.1e-22 Score=199.66 Aligned_cols=228 Identities=16% Similarity=0.206 Sum_probs=187.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+..++|++...+.+++++.||.+++||... ..++..++ .|...|.++.|++.....++++|.||+|++|+...++.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S- 139 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS- 139 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH--hhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-
Confidence 677999998899999999999999999653 34566666 89999999999988888999999999999999987543
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
..+|. |..-|....|+|.. +.+++++.|+++++||++..-....+.. |...|.+..|+...+++++||
T Consensus 140 ---------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 140 ---------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ---------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeecccccCCcEEEec
Confidence 22333 34568999999975 5677778899999999996443344664 999999999999888999999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCCCcEEEEEcC-CC----cccccccCeEEEEECC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSGTSMFVQSLR-GD----PFRDFNMSILAAYTRP 685 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~-g~----~l~~~~~~V~~v~fsP 685 (721)
+.|+.||+||+|+-+ .+++.+.+|.-.+ .++|||. ...|++++.|-+++|||.. ++ ....|..-|..+.|++
T Consensus 210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence 999999999999864 7788999999888 8999995 4678899999999999987 22 3455666788899988
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
..+ ..+|+++=.
T Consensus 289 ~~~------~~vAs~gWD 300 (311)
T KOG0277|consen 289 FDP------GQVASTGWD 300 (311)
T ss_pred ccC------ceeeecccc
Confidence 753 677777655
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.2e-23 Score=207.95 Aligned_cols=224 Identities=17% Similarity=0.288 Sum_probs=191.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.|-|..|+| ||+++++|+.||-|.|||..+|+..+.++.. -+..+|.|+.|+ .+...+++|+.||.|++|.+
T Consensus 215 h~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 215 HVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred chhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEE
Confidence 588999999 9999999999999999999999877655432 356899999998 88999999999999999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.++.+.-. ....|...|+++.|+.++..+++++.|.++|+.-+.+|+.++.|.+ |.+.|+...|.++| +.
T Consensus 293 ~tG~ClRr--------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG-~~ 362 (508)
T KOG0275|consen 293 ETGQCLRR--------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDG-HH 362 (508)
T ss_pred ecchHHHH--------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCC-Ce
Confidence 99876311 1113567799999999999999999999999999999999999998 99999999999999 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCccccc------ccCeEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDPFRDF------NMSILA 680 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~l~~~------~~~V~~ 680 (721)
+++++.||+|++|+..+..|...+...+....+ ++..-| +-..++++...++++|-++.|..++.+ .+...+
T Consensus 363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence 999999999999999999887777766655555 666666 556788888899999999999887776 346677
Q ss_pred EEECCCCCcc
Q 004969 681 AYTRPSSKSE 690 (721)
Q Consensus 681 v~fsP~~~~~ 690 (721)
+..+|.|.+-
T Consensus 443 ~~lSpkGewi 452 (508)
T KOG0275|consen 443 AILSPKGEWI 452 (508)
T ss_pred EEecCCCcEE
Confidence 7889998543
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.1e-22 Score=203.76 Aligned_cols=203 Identities=14% Similarity=0.198 Sum_probs=168.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-- 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~-- 533 (721)
|.++.|-| .|+++++++.|.+|+.|++.+|-++.+++ +|...|..++.+ .++..+++|+.|.+|++|-+.++++
T Consensus 196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred eeeEEEEe-cCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEec-CCeeEEEecCCCceEEEEEeccchhhh
Confidence 78999999 88999999999999999999999999998 899999999987 8999999999999999999999754
Q ss_pred cccccccCcceeEeccCCCeEEEEEec----CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNS----MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
....+......+.+.+...-.++.... .++.+.+++.|++|++||+.++.++.++.+ |..+|..++|+|.| ++|
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~G-kyi 349 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGG-KYI 349 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCC-eEE
Confidence 222222222233333332222221100 125788888999999999999999999997 99999999999999 899
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
+++.+|+++++||+++.++ ...+..|...+ ++.|+.+..|+++|+.|..+++|.-
T Consensus 350 ~ScaDDktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCcEEEEEecccee--eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999866 55556777777 8999999999999999999999964
No 48
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=4.9e-22 Score=210.77 Aligned_cols=230 Identities=22% Similarity=0.338 Sum_probs=184.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
.|..+.+.|++..++|+++..+.|.|||..+-. +...+...+|.+.-++++|++.....|++|+.|++|++|
T Consensus 126 EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw 205 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW 205 (422)
T ss_pred cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEE
Confidence 366778999999999999999999999986422 122223448988889999998888999999999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsP 603 (721)
|+...... ........+.-.|.+.|..++|++.. ..|.+++.|+.+.|||+|+ .++.+...+ |.+.|+|++|+|
T Consensus 206 di~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~~fnp 282 (422)
T KOG0264|consen 206 DINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCVAFNP 282 (422)
T ss_pred eccccccC--CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeEEEeCC
Confidence 99875542 01111223334567789999999976 5666778899999999994 555556664 999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC--CCc---------
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR--GDP--------- 670 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~--g~~--------- 670 (721)
.+..+|||||.|++|++||+|+.. .+.+++.+|...+ .+.|||.. ..|++++.|+.+.|||+. |..
T Consensus 283 ~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 283 FNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 998999999999999999999864 4788999999988 99999955 677888999999999986 222
Q ss_pred -------ccccccCeEEEEECCCCC
Q 004969 671 -------FRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 671 -------l~~~~~~V~~v~fsP~~~ 688 (721)
-.+|...|....|+|..+
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred CcceeEEecCcccccccccCCCCCC
Confidence 135567899999999996
No 49
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=7.1e-21 Score=215.62 Aligned_cols=228 Identities=13% Similarity=0.203 Sum_probs=167.3
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe-----------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI-----------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l-----------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
...++ ++..+++++.+.....|+...|..+..+ ...+|.+.|++++|+|.++++|++|+.||+|++||
T Consensus 26 ~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 26 STALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred ccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 33444 4455666666666667765544322111 12389999999999966888999999999999999
Q ss_pred cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
+.++..... . ......+ .|...|.+++|+|.+ +.+++++.|++|++||+++++.+..+.+ |...|.+++|+|+|
T Consensus 105 i~~~~~~~~-~--~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG 180 (493)
T PTZ00421 105 IPEEGLTQN-I--SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDG 180 (493)
T ss_pred cCCCccccc-c--CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCC
Confidence 986432100 0 0112222 356789999999986 6888999999999999999999999886 99999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe--EEEEEecCCCEEEEEe----CCCcEEEEEcCC--Cccccc---
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFSPDDHYLLGKG----SGTSMFVQSLRG--DPFRDF--- 674 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~--vsl~fSpdg~~Lasgs----~Dg~I~VWDl~g--~~l~~~--- 674 (721)
.++++|+.|++|++||+++++. +..+.+|.+. ..+.|.+++..+++++ .|+.|++||++. .++...
T Consensus 181 -~lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 181 -SLLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred -CEEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 7999999999999999999854 4555566543 3688999888887754 478999999982 233221
Q ss_pred -ccCeEEEEECCCCCcccccccEEEEec
Q 004969 675 -NMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 675 -~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
...+....|+|++ ++|++|+
T Consensus 258 ~~~~~~~~~~d~d~-------~~L~lgg 278 (493)
T PTZ00421 258 QSSALFIPFFDEDT-------NLLYIGS 278 (493)
T ss_pred CCCceEEEEEcCCC-------CEEEEEE
Confidence 2345556789998 6666665
No 50
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1e-20 Score=215.81 Aligned_cols=218 Identities=17% Similarity=0.313 Sum_probs=163.4
Q ss_pred EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 472 Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
|+.+|.|++|+......+..+. +|.+.|.+++|+|.++.+|+||+.||+|++||+.++......... .......|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~--gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc--CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEEeecCCC
Confidence 6678999999988776666666 899999999999666889999999999999999864321111100 0111224667
Q ss_pred CeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969 552 QLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 552 ~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~ 630 (721)
.|.+++|+|.+..+ ++++.|++|++||+++++.+..+. |...|.+++|+|+| .++++++.|+.|+|||++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~-- 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEI-- 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcE--
Confidence 89999999998765 577889999999999999887776 66789999999999 7999999999999999999854
Q ss_pred EEEecCCCCeE------EEEEecCCCEEEEEeCCC----cEEEEEcC--CCccccc--c---cCeEEEEECCCCCccccc
Q 004969 631 CYTASSSKGNV------MVCFSPDDHYLLGKGSGT----SMFVQSLR--GDPFRDF--N---MSILAAYTRPSSKSEIVK 693 (721)
Q Consensus 631 ~~~~~~~~~~v------sl~fSpdg~~Lasgs~Dg----~I~VWDl~--g~~l~~~--~---~~V~~v~fsP~~~~~~v~ 693 (721)
+..+.+|.+.+ ...|++++.+|++++.|+ .|+|||++ +.++... . +.+......+++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg------ 275 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG------ 275 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC------
Confidence 45566676543 123568999999988774 79999998 3444322 1 223333445556
Q ss_pred ccEEEEecCCC
Q 004969 694 VNLLASTDHCD 704 (721)
Q Consensus 694 v~lLASgs~~~ 704 (721)
.++++|++..
T Consensus 276 -~l~lsGkGD~ 285 (568)
T PTZ00420 276 -LIYLIGKGDG 285 (568)
T ss_pred -CEEEEEECCC
Confidence 6777776663
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=189.91 Aligned_cols=212 Identities=15% Similarity=0.240 Sum_probs=162.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|+++.|+- +|++.++++.|.+|++|+...|.+++++. +|...|..++-+ .++..+++|+.|..|.+||+++++.
T Consensus 19 aV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv- 93 (307)
T KOG0316|consen 19 AVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKV- 93 (307)
T ss_pred ceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec--CCCceeeecccc-ccccccccCCCCceEEEEEcccCee-
Confidence 589999999 99999999999999999999999999998 777889999987 7889999999999999999999875
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
...| .|..+|+.+.|+.....+++|+.|.++++||.++ .++++.+.. ....|.+|..+. ..+++
T Consensus 94 ---------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~~---heIva 160 (307)
T KOG0316|consen 94 ---------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVAE---HEIVA 160 (307)
T ss_pred ---------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEecc---cEEEe
Confidence 2233 3456799999999999999999999999999986 467777765 566677776653 35677
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-----------------------------------------
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH----------------------------------------- 650 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~----------------------------------------- 650 (721)
|+.||++|.||+|.+....-+ -...+.+++|++||+
T Consensus 161 GS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred eccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence 777777777777765321111 111222555555554
Q ss_pred ---EEEEEeCCCcEEEEEcCC-Cc---ccccccC-eEEEEECCCC
Q 004969 651 ---YLLGKGSGTSMFVQSLRG-DP---FRDFNMS-ILAAYTRPSS 687 (721)
Q Consensus 651 ---~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~-V~~v~fsP~~ 687 (721)
.+++|+.||.+++||+-. +. +..+... +..+.+||..
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 444889999999999862 22 2233334 7789999987
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=219.72 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=181.8
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------------------------------eEE-------------
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------------------------------NIV------------- 489 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------------------------------~~i------------- 489 (721)
-+|+++.|++ ||++||+|+.||.|+||.+... ...
T Consensus 268 gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 268 GAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 3699999999 9999999999999999987540 000
Q ss_pred -EEe-------------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEE
Q 004969 490 -SYI-------------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555 (721)
Q Consensus 490 -~~l-------------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~s 555 (721)
..+ ...||.+.|.++.|+ .+++|+++|.|.|||+|++....+ ...|.|.+-|+|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C----------L~~F~HndfVTc 414 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC----------LKVFSHNDFVTC 414 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce----------eeEEecCCeeEE
Confidence 000 013999999999998 578999999999999999998544 678999999999
Q ss_pred EEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe
Q 004969 556 VHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634 (721)
Q Consensus 556 v~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~ 634 (721)
|+|+|- +++|++|+-||.||||++...+.+.-.. -..-|++++|.|+| ...+.|+.+|.+++|++...+......+
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 999996 4677888889999999999777665444 45789999999999 7999999999999999998655443333
Q ss_pred cC-------CCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCC----Ccccccc--cCeEEEEECCCCCcccccccEEEEe
Q 004969 635 SS-------SKGNVMVCFSPDD-HYLLGKGSGTSMFVQSLRG----DPFRDFN--MSILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 635 ~~-------~~~~vsl~fSpdg-~~Lasgs~Dg~I~VWDl~g----~~l~~~~--~~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
.. +..++.+.|.|.. ..+++.+.|..|+|+|.+. ..++++. .....+.|++++ ..|+++
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-------k~IVs~ 564 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-------KHIVSA 564 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-------CEEEEe
Confidence 22 2234578888733 4577778899999999962 3466663 356778999999 888888
Q ss_pred cCCCccccCCcc
Q 004969 701 DHCDKECSHGQH 712 (721)
Q Consensus 701 s~~~ke~s~~~~ 712 (721)
+.. .+.+.++
T Consensus 565 seD--s~VYiW~ 574 (712)
T KOG0283|consen 565 SED--SWVYIWK 574 (712)
T ss_pred ecC--ceEEEEe
Confidence 854 4444433
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=195.52 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=141.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++.+| +.+++++|+.|..-.+|++.+|.....+. +|+..|+++.|+ .++.+|+||+.+|.|+||+..++...
T Consensus 66 svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~elt--gHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 66 SVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELT--GHKDSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred ceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEec--CCCCceEEEEEc-cCceEEEecCCCccEEEEEcccCceE
Confidence 589999999 99999999999999999999999877777 999999999998 89999999999999999999986542
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
..+ ..-..+.=+.|||.+..+++|+.||.+.+|.+.++...+.+.| |+.++++=.|.|+| +.++++.
T Consensus 142 ----------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdG-Kr~~tgy 209 (399)
T KOG0296|consen 142 ----------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDG-KRILTGY 209 (399)
T ss_pred ----------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCC-ceEEEEe
Confidence 222 2334577789999999999999999999999999888899997 99999999999999 8999999
Q ss_pred CCCcEEEEECCCCC
Q 004969 614 FDQDVKLWDLRQKP 627 (721)
Q Consensus 614 ~DgtIrIWDlrs~~ 627 (721)
.||+|++||+.++.
T Consensus 210 ~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQ 223 (399)
T ss_pred cCceEEEEecCCCc
Confidence 99999999998864
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=197.43 Aligned_cols=201 Identities=21% Similarity=0.365 Sum_probs=166.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC------------C------eEEEEeecCCCCCCeEEEEEeeCCCCEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------------E------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t------------g------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS 516 (721)
.+++-+|+| ||.++|+|+.|..|+|.|++. | -.++++- .|...|+++.|+ |....|++
T Consensus 114 ~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FH-Pre~ILiS 189 (430)
T KOG0640|consen 114 PCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFH-PRETILIS 189 (430)
T ss_pred ceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeec-chhheEEe
Confidence 588999999 999999999999999999861 1 1234443 899999999999 67789999
Q ss_pred EeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCC
Q 004969 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKE 594 (721)
Q Consensus 517 gs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~ 594 (721)
|+.|++|+++|+..... ....-.+....+|.++.|||.|.++++|....++++||+.+-++...-. ..|.+
T Consensus 190 ~srD~tvKlFDfsK~sa-------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSA-------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred ccCCCeEEEEecccHHH-------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999987432 1112234455789999999999999999999999999999987755433 24999
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|+++.+++.| ++.+||+.||.|++||--+++|...+.-.+....+ +..|..+|+|+++.+.|..+++|.+.
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 99999999999 89999999999999999888776554333333334 89999999999999999999999985
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=4.8e-21 Score=198.97 Aligned_cols=219 Identities=17% Similarity=0.290 Sum_probs=181.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG 543 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~ 543 (721)
+++|++|++||++++||.. |+....+. ||.++|.+++|.-.+. ..|+++|.|.++++|.++.+........
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---- 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---- 187 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh----
Confidence 4899999999999999986 78888777 9999999999974333 3699999999999999998766333221
Q ss_pred eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEEccccCCCeEE
Q 004969 544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-------------------------GRRLQVFADMHKEHINV 598 (721)
Q Consensus 544 ~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-------------------------~~~v~~l~~~h~~~V~s 598 (721)
....|...|.+++..+++..+++|+.|.++.+|+..+ +.++..+.+ |..+|.+
T Consensus 188 -~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~ 265 (423)
T KOG0313|consen 188 -VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSS 265 (423)
T ss_pred -HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceee
Confidence 1226778899999999999999999999999999221 234556666 9999999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-------Ccc
Q 004969 599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG-------DPF 671 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-------~~l 671 (721)
|.|++. ..+.+++.|.+|+.||+.++.. ...+.+.....++.++|..+.|++|+.|..+++||-+. ..+
T Consensus 266 V~w~d~--~v~yS~SwDHTIk~WDletg~~--~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 266 VVWSDA--TVIYSVSWDHTIKVWDLETGGL--KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred EEEcCC--CceEeecccceEEEEEeecccc--eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 999985 4899999999999999999865 44445555666999999999999999999999999882 236
Q ss_pred cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+|+..|.++.|+|... .+|+||+..
T Consensus 342 ~gH~nwVssvkwsp~~~------~~~~S~S~D 367 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNE------FQLVSGSYD 367 (423)
T ss_pred ecchhhhhheecCCCCc------eEEEEEecC
Confidence 78888999999999884 788888887
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.9e-21 Score=211.93 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=199.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|+++.|++ +|.+|++|..+|.|.|||..+.+.+..+.. +|...|-+++|. +..+.+|+.||.|..+|++..+..
T Consensus 219 ~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 219 LVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred ceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence 699999999 999999999999999999998888888873 389999999996 678999999999999999986653
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS- 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs- 613 (721)
... .-.|...|..+.|++++.++++||.|+.+.|||.....+...+.+ |...|.+++|+|....+||+|+
T Consensus 294 ~~~--------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 294 VST--------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred hhh--------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCceEEcCC
Confidence 221 223556789999999999999999999999999988888888887 9999999999999888999975
Q ss_pred -CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE--eCCCcEEEEEcC----CCcccccccCeEEEEECCC
Q 004969 614 -FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK--GSGTSMFVQSLR----GDPFRDFNMSILAAYTRPS 686 (721)
Q Consensus 614 -~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg--s~Dg~I~VWDl~----g~~l~~~~~~V~~v~fsP~ 686 (721)
.|++|++||+.++.. +........+.++.|++..+-|+++ ..++.|.||+.. -..+.+|...|..++++|+
T Consensus 365 s~D~~i~fwn~~~g~~--i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 365 SADRCIKFWNTNTGAR--IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred CcccEEEEEEcCCCcE--ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 499999999999854 5555555666689999998777765 456789999985 3457788889999999999
Q ss_pred CCcccccccEEEEecCCCccccCCcccCC
Q 004969 687 SKSEIVKVNLLASTDHCDKECSHGQHSRP 715 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~~ke~s~~~~~~p 715 (721)
+ ..+++|+.. |..+.++.++
T Consensus 443 g-------~~i~t~a~D--ETlrfw~~f~ 462 (484)
T KOG0305|consen 443 G-------ETIVTGAAD--ETLRFWNLFD 462 (484)
T ss_pred C-------CEEEEeccc--CcEEeccccC
Confidence 9 889998887 5555554443
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=5.9e-21 Score=200.93 Aligned_cols=224 Identities=19% Similarity=0.296 Sum_probs=192.1
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
++++...| ..+.+++|+.|.++.++|...++.+.+++ ||...|+.+.|+ ++...+++++.|..|+||.......
T Consensus 222 i~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 222 ITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLK--GHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred eeEEeecC-CCCcceecCCCCceEEEecchhhhhhhcc--CcceEEEEEEec-cchhheeecCCcceEEeeccccccC--
Confidence 67788888 47889999999999999999999999998 999999999998 7888999999999999999877442
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
......|..+|+.+..||.|.+|++++.||++.+.|++++..+..... ...-.+++.+|+||| .+|.+|..
T Consensus 296 -------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~ 367 (506)
T KOG0289|consen 296 -------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTP 367 (506)
T ss_pred -------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCC
Confidence 234556788999999999999999999999999999999998877662 123458999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cccccc----ccCeEEEEECCCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPFRDF----NMSILAAYTRPSSK 688 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l~~~----~~~V~~v~fsP~~~ 688 (721)
||.|+|||+.++. .+..+++|.+.+ .++|+.+|-||+++..|+.|++||+|. +.++.+ ...+..+.|.+.|
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG- 444 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG- 444 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC-
Confidence 9999999999875 467788999999 899999999999999999999999993 234444 2368999999999
Q ss_pred cccccccEEEEecC
Q 004969 689 SEIVKVNLLASTDH 702 (721)
Q Consensus 689 ~~~v~v~lLASgs~ 702 (721)
.+|+.++.
T Consensus 445 ------t~L~~~g~ 452 (506)
T KOG0289|consen 445 ------TYLGIAGS 452 (506)
T ss_pred ------CeEEeecc
Confidence 55555543
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=2.6e-22 Score=205.63 Aligned_cols=205 Identities=16% Similarity=0.306 Sum_probs=169.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|+|+.+.. ..+++|..|++|+|||..+-.+...+. ||+++|.|+.|. ...+++||.|.+|+|||.+++++.
T Consensus 199 gVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~--GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 199 GVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILT--GHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ceEEEEecc---hhhhcccccCceEEeccccHHHHHhhh--cCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence 489999955 789999999999999999888888777 999999999974 569999999999999999998762
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
. .-+.|-+.|..+.| .++++++++.|.++.+||+.+... .+.+.| |...|+.+.|+. +++++
T Consensus 271 -~--------tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~---kyIVs 335 (499)
T KOG0281|consen 271 -N--------TLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD---KYIVS 335 (499)
T ss_pred -h--------HHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeeecccc---ceEEE
Confidence 2 12334466788888 678999999999999999987653 245556 999999999963 59999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPS 686 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~ 686 (721)
++.|.+|++|++.+..+ +.++.+|...+ ++.+ .|+++++|+.|++|++||+. |.- +.+|+.-|.++.|...
T Consensus 336 ASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred ecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence 99999999999999855 66677887776 5544 69999999999999999998 443 4566667888888653
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=207.45 Aligned_cols=227 Identities=20% Similarity=0.324 Sum_probs=167.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---------------------------CeEE------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---------------------------ENIV------------------ 489 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---------------------------g~~i------------------ 489 (721)
.|.++++.| .|.++++|+.|.+|++||+.. |..+
T Consensus 169 ~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 169 IVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred EEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 478888888 888888888888888888642 1111
Q ss_pred --EEe----------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEE
Q 004969 490 --SYI----------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH 557 (721)
Q Consensus 490 --~~l----------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~ 557 (721)
... ...||...+++.+|+|...+.++|++.||++||||+...+...+.+..... -...-++++++
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~---~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA---GGKRVPVTSCA 324 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC---CCcccCceeee
Confidence 000 113899999999999988999999999999999999886542221111000 01223589999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCC--cEEEEEccccCC--CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEE
Q 004969 558 VNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKE--HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633 (721)
Q Consensus 558 ~sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~--~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~ 633 (721)
|++++..|++|..||.|.+||.++. .+...+..+|.. .|++|.|+++| ++|++-+.|+++++||+|+.+ .++..
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~k-kpL~~ 402 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFK-KPLNV 402 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccc-cchhh
Confidence 9999999999999999999998653 344555556877 99999999999 899999999999999999853 34443
Q ss_pred ecCC---CCeEEEEEecCCCEEEEEeC------CCcEEEEEcCCC-c---ccccccCeEEEEECCCC
Q 004969 634 ASSS---KGNVMVCFSPDDHYLLGKGS------GTSMFVQSLRGD-P---FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 634 ~~~~---~~~vsl~fSpdg~~Lasgs~------Dg~I~VWDl~g~-~---l~~~~~~V~~v~fsP~~ 687 (721)
..+- .....++|||+.+.|++|+. .|.+++||...- . +---..+|..+.|||.-
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence 3332 22236899999999999854 457889886521 1 11115689999999987
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.2e-21 Score=204.97 Aligned_cols=222 Identities=15% Similarity=0.211 Sum_probs=180.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-|.++.|-. ||.++|+|...|.|+|+|..+...+..+. +|+.+|..+.|+|.++..+++|++|+.+++||+.+...
T Consensus 70 ~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v- 145 (487)
T KOG0310|consen 70 VVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV- 145 (487)
T ss_pred ceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-
Confidence 378899999 99999999999999999977655666666 89999999999999999999999999999999998532
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. .-...|.+.|.+.+|+|..+ .+++||.||.|++||+++. ..+.++. |..+|..+.+-|.| .+++++
T Consensus 146 ~--------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsg-s~iasA 214 (487)
T KOG0310|consen 146 Q--------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSG-SLIASA 214 (487)
T ss_pred E--------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCC-CEEEEc
Confidence 1 12234667899999999877 5666778999999999987 7777887 99999999999998 688888
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-cc--ccccCeEEEEECCCCC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FR--DFNMSILAAYTRPSSK 688 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~--~~~~~V~~v~fsP~~~ 688 (721)
+. ..|+|||+-++... +.....|...+ |+.+..++..|++|+-|+.+++||+..-. .. .+.++|.+++.+|+..
T Consensus 215 gG-n~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 215 GG-NSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred CC-CeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence 74 57999999977543 33334355555 99999999999999999999999965222 22 3367999999999884
Q ss_pred ccccc
Q 004969 689 SEIVK 693 (721)
Q Consensus 689 ~~~v~ 693 (721)
..+++
T Consensus 293 t~viG 297 (487)
T KOG0310|consen 293 TVVIG 297 (487)
T ss_pred eEEEe
Confidence 44433
No 61
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=218.06 Aligned_cols=235 Identities=17% Similarity=0.223 Sum_probs=184.9
Q ss_pred cccceeeeeeeeeecC--CCCCCceeeeeccCCCCCCCC----CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE
Q 004969 415 MSQYFYTRSLCAAKVG--SSAWPCLHTLTVSGNHMGDEN----RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI 488 (721)
Q Consensus 415 ~~~~~~~r~l~a~k~~--~~a~p~~~~l~~~gh~~~~~~----~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~ 488 (721)
.+..+|...+.+++-. ..+|.+... ..|.+..+.. ....+++++.++ .|++.+.|+..|+|-+||+++|..
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~--~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~ 482 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNK--TSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIH 482 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCc--ccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCee
Confidence 3455666666555544 233443321 1222222211 224689999999 999999999999999999999988
Q ss_pred EEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE
Q 004969 489 VSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA 567 (721)
Q Consensus 489 i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls 567 (721)
...+. ...|.++|++++.- ..++.+++++.+|.+++||..+... .....-...+.++..|.....+++
T Consensus 483 r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l----------~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVL----------KKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred ecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcce----------eeeeccCCCcceeeeeehhhhhhh
Confidence 87772 34899999999974 6678899999999999999998542 122233345778888888889999
Q ss_pred EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec
Q 004969 568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP 647 (721)
Q Consensus 568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp 647 (721)
+..|-.|+++|..+.+.++.|.+ |++.|+.++|+||| +++++++.|++||+||+.++.+.-.. ......+++.|||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~--~vd~~~~sls~SP 627 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLIDGL--LVDSPCTSLSFSP 627 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceeeeE--ecCCcceeeEECC
Confidence 99999999999999999999998 99999999999999 89999999999999999998664333 3344566899999
Q ss_pred CCCEEEEEeCC-CcEEEEEcC
Q 004969 648 DDHYLLGKGSG-TSMFVQSLR 667 (721)
Q Consensus 648 dg~~Lasgs~D-g~I~VWDl~ 667 (721)
+|++||++..| ..|++|.-+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCCEEEEEEecCceEEEEEch
Confidence 99999999988 689999744
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.1e-20 Score=187.59 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=183.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---------------------------------------- 494 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---------------------------------------- 494 (721)
+|.++.|++ +|.++++++.|.++++||..+|+.++++..
T Consensus 16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 589999999 999999999999999999887766554432
Q ss_pred --CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969 495 --FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK 572 (721)
Q Consensus 495 --~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg 572 (721)
.||...|.+++.+| -++.++|++.|++|++||++..++...... ..-..+++.|.|-.++++....
T Consensus 95 YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEecCCC
Confidence 29999999999995 558999999999999999997655211111 1123467888888888887777
Q ss_pred cEEEEECCC--CcEEEEEcc--ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe--EEEEEe
Q 004969 573 NIALYDINS--GRRLQVFAD--MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFS 646 (721)
Q Consensus 573 ~IrlWDl~s--~~~v~~l~~--~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~--vsl~fS 646 (721)
.|++||+|+ ..+..++.- .-....+.+.|+|+| +.++.+...+.+++.|.-+|.....+......+. .+.+|+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 999999996 345555542 245678999999999 7888888899999999999876555555444332 388999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC-CCcc---cc-cccCeEEEEECCCCCcccccccEEEEecCCCccccCCc
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR-GDPF---RD-FNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 711 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~-g~~l---~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~~ 711 (721)
||++++++|+.||+|++|+++ |+++ ++ ..+++.++.|+|.. .++||++..--.|....
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-------~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-------AMFVSASSNLVFWLPDE 304 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-------eeeeecCceEEEEeccc
Confidence 999999999999999999998 4443 33 35688899999999 89998887644444443
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=1.5e-20 Score=195.27 Aligned_cols=243 Identities=17% Similarity=0.233 Sum_probs=189.6
Q ss_pred CeEEEEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIP--SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~--~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
++.+++|.-. ....+++++.|.++++|.++.+...-... ..||..+|-+|.-. .++..+++||.|.+|+||+...
T Consensus 146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC
Confidence 5776777552 23469999999999999998776543222 23999999999987 7899999999999999999433
Q ss_pred CCC-cc--------------cccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC
Q 004969 531 MPP-SI--------------RGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE 594 (721)
Q Consensus 531 ~~~-~~--------------~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~ 594 (721)
... .+ .......+.+.+ .|..+|.+|.|.+ ...+++++.|.+|+.||+.++..+.++. ...
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~k 301 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNK 301 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCc
Confidence 111 00 000111223333 4668899999955 8899999999999999999999998887 577
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCC--
Q 004969 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGD-- 669 (721)
Q Consensus 595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~-- 669 (721)
..+++..+|.. .++++|+.|..||+||.|++. ....+++.+|..++ ++.|+|.. ..|++|+.|+++++||+|..
T Consensus 302 sl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 302 SLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred ceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 89999999988 899999999999999999863 34467888999999 89999965 56688999999999999932
Q ss_pred c---ccccccCeEEEEECCCCCcccccccEEEEecCCCccccCC
Q 004969 670 P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 710 (721)
Q Consensus 670 ~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~ 710 (721)
| +.+|...|.++.|... ..|+|||...+-..+.
T Consensus 381 plydI~~h~DKvl~vdW~~~--------~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 381 PLYDIAGHNDKVLSVDWNEG--------GLIVSGGADNKLRIFK 416 (423)
T ss_pred cceeeccCCceEEEEeccCC--------ceEEeccCcceEEEec
Confidence 3 5567889999999865 4789998875544443
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.6e-20 Score=188.75 Aligned_cols=235 Identities=16% Similarity=0.220 Sum_probs=180.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|.+|+|||+...++++|+.||+||+|+++. |..+... ...|.++|.+++|+ .++..+++|+.|+.+++||+.+++.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccCCCe
Confidence 4889999998888899999999999999986 4544432 23789999999998 8999999999999999999999754
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCcEEEEEcc---------------------
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFAD--------------------- 590 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~v~~l~~--------------------- 590 (721)
...-.|..+|..++|-+... .+++|+.|++|+.||.++..++.++.-
T Consensus 107 ----------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 107 ----------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred ----------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 22334778899999977665 789999999999999998776654430
Q ss_pred -------------------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC------C---eE-
Q 004969 591 -------------------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK------G---NV- 641 (721)
Q Consensus 591 -------------------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~------~---~v- 641 (721)
.-+-.+.||+..++. ...+.|+-.|.+-|..+..+....-+++..|. + .+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 002236677777766 45677888888888777664333334443333 1 23
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCCcccccccEEEEecCCCccccCCc
Q 004969 642 MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 711 (721)
Q Consensus 642 sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~~ 711 (721)
+++|+|.-..|+|+|.||++.+||-..+ ....+..+|.+..|+.+| .++|-+-+- +|+.+-
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G-------~ifaYA~gY--DWSkGh 320 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG-------SIFAYALGY--DWSKGH 320 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC-------CEEEEEeec--cccccc
Confidence 7999999999999999999999997632 234567899999999999 888887776 666553
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=2e-20 Score=196.99 Aligned_cols=231 Identities=19% Similarity=0.184 Sum_probs=193.2
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+...|+.+.|+| +...+++++.|-.|+||............ .|..+|+.+.-+ +.+++|++++.||+..+.|++++
T Consensus 260 h~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~--~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 260 HTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSR--PHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred cceEEEEEEecc-chhheeecCCcceEEeeccccccCccccc--cccccceeeeec-cCCcEEEEecCCceEEEEEccCC
Confidence 334689999999 88999999999999999998776555555 899999999988 78999999999999999999997
Q ss_pred CCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 532 PPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
..... +.-. ..-.+++.+|||+|-.|.+|..||.+++||+.++..+..|.+ |.++|..|+|+.+| ++++
T Consensus 336 ~~lt~--------vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENG-Y~La 405 (506)
T KOG0289|consen 336 SQLTV--------VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENG-YWLA 405 (506)
T ss_pred cEEEE--------EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCc-eEEE
Confidence 65211 1111 112479999999999999999999999999999999999998 99999999999999 9999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC------cccccccCeEEEEEC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD------PFRDFNMSILAAYTR 684 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~------~l~~~~~~V~~v~fs 684 (721)
+++.|+.|++||+|..+..+.+.+....+..++.|.+.|.||+.++.|=.|++++-..+ .+..|.+....+.|.
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 99999999999999987777777776666669999999999999988777777763322 234445577788888
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
... .+++++|..
T Consensus 486 ~~a-------q~l~s~smd 497 (506)
T KOG0289|consen 486 EHA-------QYLASTSMD 497 (506)
T ss_pred ccc-------eEEeeccch
Confidence 777 889999887
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=5.3e-20 Score=183.77 Aligned_cols=216 Identities=17% Similarity=0.170 Sum_probs=186.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+++.+.|+. +|.+|++++.|.++.||-..+|+.+.++. ||.++|+++... .+...+++|+.|.++++||+++++.
T Consensus 12 plTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 12 PLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred ccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcE-
Confidence 689999999 99999999999999999998999999998 999999999986 7889999999999999999999775
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECC-------CCcEEEEEccccCCCeEEEEEc
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDIN-------SGRRLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~-------s~~~v~~l~~~h~~~V~sI~fs 602 (721)
...+....+|..+.|+..|..++++.+ .+.|.++|++ +.++...+.. +.+.++.+-|.
T Consensus 87 ---------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg 156 (327)
T KOG0643|consen 87 ---------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWG 156 (327)
T ss_pred ---------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-Cccceeeeeec
Confidence 556667778999999999999888864 4679999999 4566777775 88999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-ccccc--ccCe
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRDF--NMSI 678 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~~--~~~V 678 (721)
|-+ ..+++|..||.|.+||.+++.. .+.....|...+ .+.++||..++++++.|.+.++||++.- .++.+ ..+|
T Consensus 157 ~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 157 PLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred ccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc
Confidence 999 7999999999999999999743 233444455555 8999999999999999999999998832 23333 4689
Q ss_pred EEEEECCCC
Q 004969 679 LAAYTRPSS 687 (721)
Q Consensus 679 ~~v~fsP~~ 687 (721)
++++++|..
T Consensus 235 N~aaisP~~ 243 (327)
T KOG0643|consen 235 NTAAISPLL 243 (327)
T ss_pred cceeccccc
Confidence 999999987
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-20 Score=197.90 Aligned_cols=231 Identities=11% Similarity=0.151 Sum_probs=176.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~---i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|+-+.||+ +|+++|+|+.|.+..||.+..... .+++. +|..+|.-+.|+ |+.++|++|+.|..+.+||+.++
T Consensus 226 EVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 226 EVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred cEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC-CCCCeEEecCchHheeeccCCcc
Confidence 699999999 999999999999999999764433 45555 999999999999 78899999999999999999998
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
........+ +...+.+.+|.|++..+++|+.|+++..||+. |......++.....|.+++..+|| ..+++
T Consensus 302 d~~~~y~~~--------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg-k~vl~ 371 (519)
T KOG0293|consen 302 DLRHLYPSG--------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG-KYVLL 371 (519)
T ss_pred hhhhhcccC--------cCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC-cEEEE
Confidence 752111111 12467999999999999999999999999998 555566665445679999999999 67777
Q ss_pred EECCCcEEEEECCCCCceeE---------EEe------------------------------cCCCC---eEEEEEec-C
Q 004969 612 SSFDQDVKLWDLRQKPIQPC---------YTA------------------------------SSSKG---NVMVCFSP-D 648 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~---------~~~------------------------------~~~~~---~vsl~fSp-d 648 (721)
.+.|..|++|+..+.....+ +.+ .||.. .+.-+|-. +
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 77888888888765322100 000 11111 11233433 4
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969 649 DHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 705 (721)
Q Consensus 649 g~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k 705 (721)
..++++|+.|+.|+||+.. |++ +.+|...|++++|+|..+ .++||||-..+
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p------~m~ASasDDgt 506 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP------EMFASASDDGT 506 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH------HHhhccCCCCe
Confidence 4677799999999999977 555 567788999999999985 78999988743
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-20 Score=185.68 Aligned_cols=225 Identities=14% Similarity=0.182 Sum_probs=181.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~ 540 (721)
.|++||+++.|++|+|+.+.+.. .+.++. ||.++|+.++|. |..|++|++++.||.|.||.-++++-. ..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~--k~-- 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT--KA-- 95 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEec--CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh--hh--
Confidence 67999999999999999997644 344554 999999999994 557899999999999999999887431 11
Q ss_pred CcceeEeccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCC--cEEEEEccccCCCeEEEEEcCC---C--------
Q 004969 541 GAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNH---S-------- 605 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~~--~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~~V~sI~fsPd---g-------- 605 (721)
...-.|...|++++|.|.+ -.++.++.||.|.+.+.++. -....+..+|.-.|++++|.|. |
T Consensus 96 ---~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 96 ---YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred ---hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 1122466779999998864 46677778999999998864 2223333359999999999987 2
Q ss_pred --CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEEEEcCC-------Ccc
Q 004969 606 --PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFVQSLRG-------DPF 671 (721)
Q Consensus 606 --~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~VWDl~g-------~~l 671 (721)
.+.|++|+.|..|+||+..++.......+.+|...+ .++|.|.- .+|++++.||++.||..+. ..+
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc
Confidence 146999999999999999987655556688999999 89999954 5899999999999998762 236
Q ss_pred cccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969 672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 705 (721)
Q Consensus 672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k 705 (721)
..|...+..+.|++.+ ++||.+++.++
T Consensus 253 ~~f~~~~w~vSWS~sG-------n~LaVs~GdNk 279 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSG-------NILAVSGGDNK 279 (299)
T ss_pred ccCCcceEEEEEeccc-------cEEEEecCCcE
Confidence 6778889999999999 99999998865
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=6e-21 Score=199.95 Aligned_cols=223 Identities=19% Similarity=0.250 Sum_probs=180.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.++.+.|.+ ++.++++++.|+.+++|++...+...++. ||.+.|+++.|. .....+++|+.|.+|++||+....+.
T Consensus 221 ~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 221 NITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred CcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhh-ccccceeeccccchhhhhhhhhhhee
Confidence 489999999 88999999999999999999999999988 899999999997 55555999999999999999985552
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
...+ ....+..+..+ ...+++|..|+.||+||++++.++..... .+.|+++..+++| ..+.+++.
T Consensus 297 kt~l----------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g-~~lLsssR 361 (459)
T KOG0288|consen 297 KTVL----------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL--GGRVTSLDLSMDG-LELLSSSR 361 (459)
T ss_pred cccc----------ccccccceEec--ceeeeecccccceEEEeccCCceeeEeec--CcceeeEeeccCC-eEEeeecC
Confidence 2111 12334555553 56677777899999999999999999884 4599999999999 78888899
Q ss_pred CCcEEEEECCCCCceeEEEecCC---CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc----cc--ccCeEEEEECC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR----DF--NMSILAAYTRP 685 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~---~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~----~~--~~~V~~v~fsP 685 (721)
|.++.+.|+++......+...+. ..+..+.|||++.|+++|+.||.|+||++.+..+. .- ...|.+++|+|
T Consensus 362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 99999999999876655554332 23447999999999999999999999999844321 11 22699999999
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
.| .-|++++..
T Consensus 442 sG-------~~Llsadk~ 452 (459)
T KOG0288|consen 442 SG-------SGLLSADKQ 452 (459)
T ss_pred CC-------chhhcccCC
Confidence 99 666666664
No 70
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=9.5e-21 Score=210.16 Aligned_cols=198 Identities=13% Similarity=0.167 Sum_probs=171.4
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-----E--EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-----V--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-----i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
..|.+++++.-...+++++|.|+++++|++...+. + .......|...|++|+.+ ++..+++|||.|.+.+||
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIW 490 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeee
Confidence 36889999886778999999999999999975221 1 111235899999999998 678999999999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
+++.... . .+-..|...|.+|.|++.++.+++++.|++|+||.+.+..++++|.| |...|..+.|-.+|
T Consensus 491 ~le~~~l-~--------~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~- 559 (775)
T KOG0319|consen 491 DLEQLRL-L--------GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNG- 559 (775)
T ss_pred cccCceE-E--------EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCC-
Confidence 9995332 1 22334667899999999999999999999999999999999999998 99999999999999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
..|++++.||-|++|++.++.| ..++..|...+ +++-+|.+.++++|+.||.|.+|.
T Consensus 560 ~qliS~~adGliKlWnikt~eC--~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNEC--EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cEEEeccCCCcEEEEeccchhh--hhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 7999999999999999999966 66778888887 999999999999999999999995
No 71
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.9e-20 Score=188.88 Aligned_cols=202 Identities=23% Similarity=0.339 Sum_probs=168.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------------E-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------------I-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------------~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG 521 (721)
.|.++...+..|.++++|+.||.|.|||+++-. + +..-...+|.-+|.++.|.|.+...+.++|-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 588999999999999999999999999997532 1 111122478889999999999999999999999
Q ss_pred eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV 598 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s 598 (721)
+++|||.++-+. .+.|..++.|++-+++|-. ..+++|..|-.|++.|+.+|...+++.| |.+.|.+
T Consensus 125 tlKVWDtnTlQ~----------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-Hr~~vla 193 (397)
T KOG4283|consen 125 TLKVWDTNTLQE----------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-HRDGVLA 193 (397)
T ss_pred eEEEeeccccee----------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc-ccCceEE
Confidence 999999999543 6677778888988888743 3555566788899999999999999998 9999999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCCC-Cce-----------eE-EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 599 VKFSNHSPSIFATSSFDQDVKLWDLRQK-PIQ-----------PC-YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~-~~~-----------~~-~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
+.|+|.....|+||+.||.||+||+|.. .+. +. ..-..|.+.+ .++|+.+|.++++.+.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 9999999889999999999999999863 111 11 1233455566 89999999999999999999999
Q ss_pred EcC
Q 004969 665 SLR 667 (721)
Q Consensus 665 Dl~ 667 (721)
+..
T Consensus 274 n~~ 276 (397)
T KOG4283|consen 274 NME 276 (397)
T ss_pred ecc
Confidence 976
No 72
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-21 Score=213.71 Aligned_cols=230 Identities=19% Similarity=0.238 Sum_probs=177.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.+..+.|+.-+.++||+++..|.|.+||+.. .+.+..+. .|...|+++.|++..+.+|+|||.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 3556788876889999999999999999986 33334444 899999999999999999999999999999999986
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
+.. ...+.....|..|.|+|.. ..|+++.+.|.+++||+|.. ++...+.. |.++|.++.|+|++ .+|
T Consensus 167 ~S~---------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr-~~l 235 (839)
T KOG0269|consen 167 KSK---------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNR-EWL 235 (839)
T ss_pred ccc---------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCC-cee
Confidence 542 1122234568999999875 55666667799999999964 45566664 99999999999988 899
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE-E--eCCCcEEEEEcCC-----CcccccccCeEEE
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG-K--GSGTSMFVQSLRG-----DPFRDFNMSILAA 681 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las-g--s~Dg~I~VWDl~g-----~~l~~~~~~V~~v 681 (721)
||||.|+.|+|||+.+.+..+..++........++|-|..++.++ + ..|-.|+|||++. ..+..|...+..+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 999999999999999877666766654444448999998876554 3 2477999999983 2244556788888
Q ss_pred EECCCCCcccccccEEEEecCC
Q 004969 682 YTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|..... ..+-+|+..
T Consensus 316 ~W~~~d~------~~l~s~sKD 331 (839)
T KOG0269|consen 316 AWDSGDR------INLWSCSKD 331 (839)
T ss_pred eccCCCc------eeeEeecCc
Confidence 9965322 455555544
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=2.9e-20 Score=197.34 Aligned_cols=219 Identities=18% Similarity=0.328 Sum_probs=174.7
Q ss_pred CceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-----EEEeecCCCCCCeEEEEEeeC
Q 004969 435 PCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-----VSYIPSFGAMNSVLGLCWLKK 509 (721)
Q Consensus 435 p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-----i~~l~~~~H~~~V~sl~fsp~ 509 (721)
.+.-.+.+.||..- =++++|++.....+++|+.|++|.+||+..... .......+|...|..++|++.
T Consensus 166 ~~~Pdl~L~gH~~e-------g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~ 238 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKE-------GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL 238 (422)
T ss_pred cCCCceEEEeeccc-------ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc
Confidence 44445566677772 245899999999999999999999999974322 112222499999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCC-CcEEEE
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINS-GRRLQV 587 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s-~~~v~~ 587 (721)
+...+++++.|+.+.|||++++.. ......-.|..+|.|++|+|.+..++++ +.|++|.+||+|+ .+++.+
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~-------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTS-------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCC-------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 999999999999999999996321 1122334567889999999988766655 5699999999997 457888
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC------------CCceeEEEecCCCCeE-EEEEecCCCEE-E
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ------------KPIQPCYTASSSKGNV-MVCFSPDDHYL-L 653 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs------------~~~~~~~~~~~~~~~v-sl~fSpdg~~L-a 653 (721)
+.+ |...|.+|.|+|+...++|+++.|+.+.|||+.. +....++...||...| .+.|+|+..++ +
T Consensus 312 ~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 312 FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 887 9999999999999989999999999999999864 2233467778888888 79999988765 5
Q ss_pred EEeCCCcEEEEEcCC
Q 004969 654 GKGSGTSMFVQSLRG 668 (721)
Q Consensus 654 sgs~Dg~I~VWDl~g 668 (721)
+.+.|+.+.||....
T Consensus 391 SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAE 405 (422)
T ss_pred EecCCceEEEeeccc
Confidence 668899999999873
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=5.2e-20 Score=212.41 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=177.9
Q ss_pred CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCC------------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969 455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHEN------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~t------------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D 520 (721)
+|.+++.+| ++..+++|+ .||.++||+.+. .+.+.+.. .|.+.|+|+.|+ +++.+||+||+|
T Consensus 15 ~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--~h~~sv~CVR~S-~dG~~lAsGSDD 90 (942)
T KOG0973|consen 15 SIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--DHDGSVNCVRFS-PDGSYLASGSDD 90 (942)
T ss_pred eEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeec--cccCceeEEEEC-CCCCeEeeccCc
Confidence 489999999 999999999 899999998652 11223333 799999999998 899999999999
Q ss_pred CeEEEEEcCCC-CCcc-------cccccCccee-EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc
Q 004969 521 GSLKLYDIRHM-PPSI-------RGMHYGAGTV-TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591 (721)
Q Consensus 521 GtVrIWDi~~~-~~~~-------~~~~~~~~~~-~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~ 591 (721)
+.|.||..... .... .......... -..|...|..++|+|++.+++++|.|++|.+|+.++.+.+..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~- 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG- 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-
Confidence 99999998841 1000 1111111222 234778899999999999999999999999999999999999997
Q ss_pred cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec-----CCCCeEEEEEecCCCEEE-------------
Q 004969 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-----SSKGNVMVCFSPDDHYLL------------- 653 (721)
Q Consensus 592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~-----~~~~~vsl~fSpdg~~La------------- 653 (721)
|.+.|-.+.|.|-| ++||+-+.|++|+||++.+.......+-+ ...-...+.|||||++|+
T Consensus 170 H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999999 89999999999999997653221111100 001111455555555555
Q ss_pred --------------------------------------------------EEeCCCcEEEEEcC-CCccc----ccccCe
Q 004969 654 --------------------------------------------------GKGSGTSMFVQSLR-GDPFR----DFNMSI 678 (721)
Q Consensus 654 --------------------------------------------------sgs~Dg~I~VWDl~-g~~l~----~~~~~V 678 (721)
+|+.|++|.||... .+|+- -+..+|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 78999999999975 34422 236799
Q ss_pred EEEEECCCCCcccccccEEEEecCC
Q 004969 679 LAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 679 ~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+.|+|+| ..|..||..
T Consensus 329 ~DmsWspdG-------~~LfacS~D 346 (942)
T KOG0973|consen 329 VDMSWSPDG-------FSLFACSLD 346 (942)
T ss_pred eeeeEcCCC-------CeEEEEecC
Confidence 999999999 666666654
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.1e-19 Score=201.85 Aligned_cols=229 Identities=18% Similarity=0.250 Sum_probs=184.6
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+.+..|.| .+.++++|...|.+.+||+.+...+.+++ +|.+.|++++.+ +++..+++||.|.+|++||..-...
T Consensus 415 ~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~-- 488 (888)
T KOG0306|consen 415 ILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR--AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVS-- 488 (888)
T ss_pred EEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh--ccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEec--
Confidence 44455555 45555555555555555555555444444 899999999987 7899999999999999999864211
Q ss_pred cccccCc-------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 536 RGMHYGA-------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 536 ~~~~~~~-------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
..+.. ....+.-.+.|.|+.++|++.+++++--|.+|++|-+.+-+...++.| |.-+|.|+.++||+ .+
T Consensus 489 --~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DS-kl 564 (888)
T KOG0306|consen 489 --VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDS-KL 564 (888)
T ss_pred --cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCc-Ce
Confidence 11111 112444567899999999999999999999999999999999899997 99999999999999 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC----CCcccccccCeEEEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR----GDPFRDFNMSILAAYT 683 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~l~~~~~~V~~v~f 683 (721)
++|||.|..|+||-+.-|.| ...+.+|...+ ++.|-|....++++|.|+.|+-||-. -..+.+|...|.+++.
T Consensus 565 ivTgSADKnVKiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDC--HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred EEeccCCCceEEeccccchh--hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 99999999999999998866 45667777776 99999999999999999999999855 2356788899999999
Q ss_pred CCCCCcccccccEEEEecCC
Q 004969 684 RPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 684 sP~~~~~~v~v~lLASgs~~ 703 (721)
+|+| .+++|+|+.
T Consensus 643 ~~~G-------~~vvs~shD 655 (888)
T KOG0306|consen 643 SPNG-------SFVVSSSHD 655 (888)
T ss_pred cCCC-------CeEEeccCC
Confidence 9999 899999986
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=193.15 Aligned_cols=199 Identities=16% Similarity=0.249 Sum_probs=168.5
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+..+|..+.|+|+++..+++|++|+.+++||+.+......+. +|++.|.+.+|+|.++..++|||.||+|++||++..
T Consensus 109 h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 109 HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec--CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 344688899999999999999999999999999887644554 999999999999888889999999999999999984
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
. .....+.|..+|.++.+-|.|..|+++|. ..|++||+.+|.. +..+.. |...|+|+.+..++ ..|+
T Consensus 187 ~---------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~-~rLl 254 (487)
T KOG0310|consen 187 T---------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDS-TRLL 254 (487)
T ss_pred C---------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc-ccceEEEEEeecCC-ceEe
Confidence 2 34678888899999999898888888774 6799999996554 444444 99999999999988 8999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
+|+-|+.|++||+.+-+. ++.+.-..+..+++.+|+++.++.|-.+|.+.+=+.
T Consensus 255 S~sLD~~VKVfd~t~~Kv--v~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKV--VHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ecccccceEEEEccceEE--EEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999776543 555555556669999999999999999998876643
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=191.86 Aligned_cols=230 Identities=13% Similarity=0.195 Sum_probs=193.6
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
-+|.|+.|+. |..++|+|+.||.|+||.+.+|.+++.+.. +|...|+++.|+ .++..+++++.|.++|+..+..++.
T Consensus 264 ~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~ 340 (508)
T KOG0275|consen 264 DAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKC 340 (508)
T ss_pred cceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEc-cCcchhhcccccceEEEeccccchh
Confidence 3699999999 999999999999999999999999988864 899999999998 8899999999999999999999876
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg 612 (721)
++...+ |...|+.+.|.++|..+++++.||+|++|+..+++++.+|+. +...+|+++..-|..+..++++
T Consensus 341 -LKEfrG--------HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 341 -LKEFRG--------HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred -HHHhcC--------ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 233333 335578899999999999999999999999999999999884 2456899999999998999999
Q ss_pred ECCCcEEEEECCCCCceeEEE-ecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYT-ASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPS 686 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~-~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~ 686 (721)
...++|.|.++... ....+. ... ....++.+.||.|.|+++.+.|+.++.|.+. |. .+..|+..|..++-||.
T Consensus 412 Nrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred cCCCeEEEEeccce-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 99999999998764 222222 111 2334588999999999999999999999976 32 34556778999999999
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
. ++||+-+..
T Consensus 491 q-------NllAsYsED 500 (508)
T KOG0275|consen 491 Q-------NLLASYSED 500 (508)
T ss_pred c-------chhhhhccc
Confidence 8 999987764
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=204.89 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=164.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-|..|.|+. .++|++++.|.|||+|++....+++.+ .|.+-|+||+|+|.|.+++++|+-||.||||++...+.
T Consensus 371 DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V- 444 (712)
T KOG0283|consen 371 DILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV- 444 (712)
T ss_pred hheeccccc--CCeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-
Confidence 488899997 488999999999999999999999998 68999999999999999999999999999999987432
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--------ccCCCeEEEEEcCCCC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--------MHKEHINVVKFSNHSP 606 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--------~h~~~V~sI~fsPdg~ 606 (721)
..-....+-|+++++.|+|+..++|+.+|.+++|+....+.+..+.- .|. .|++++|.|..+
T Consensus 445 ---------v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 445 ---------VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred ---------EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 12223345699999999999999999999999999998776655431 133 799999999887
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEe-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~-~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
..+++.+.|..|||||.++......+.. ......+...|+.||++|++|+.|..|+||+..
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 7788889999999999987755444432 222333578999999999999999999999984
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=203.88 Aligned_cols=206 Identities=17% Similarity=0.281 Sum_probs=172.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|+++++.. .+.++++|+.|.+++|||..+|.+...+. +|.+.|.++.. .+.++++|+.|.+|++|++.++..
T Consensus 251 ~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~- 323 (537)
T KOG0274|consen 251 GVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC- 323 (537)
T ss_pred CceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEc---cCceEeeccCCceEEEEeccCcce-
Confidence 489999987 78999999999999999999999999998 99999999985 467889999999999999997654
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
...+. |..+|.++..+ ++.+++|+.|++|++||+.++++++++.+ |...|.++.+.+. ..+++|+
T Consensus 324 ---------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~--~~~~Sgs 389 (537)
T KOG0274|consen 324 ---------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE--NRLLSGS 389 (537)
T ss_pred ---------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc--ceEEeee
Confidence 23333 77889999994 89999999999999999999999999998 9999999988765 5899999
Q ss_pred CCCcEEEEECCCC-CceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCccc---c-cccCeEEEEEC
Q 004969 614 FDQDVKLWDLRQK-PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR---D-FNMSILAAYTR 684 (721)
Q Consensus 614 ~DgtIrIWDlrs~-~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~---~-~~~~V~~v~fs 684 (721)
.|++|++||+++. ++ +..+.+|...+ -.....+++|++++.|+.|++||.. +...+ + +...|..+++.
T Consensus 390 ~D~~IkvWdl~~~~~c--~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKC--IHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eccceEeecCCchhhh--hhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 9999999999998 55 56667777766 2334468999999999999999987 33322 2 33455555554
No 80
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.84 E-value=1.5e-18 Score=186.47 Aligned_cols=239 Identities=17% Similarity=0.248 Sum_probs=183.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~ 530 (721)
.++-..|+| .|.++|+|...|+|||||......+-..+.+--.++|..++|. .++.++++.+.. |.+.+||..+
T Consensus 61 ~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd-~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 61 QVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWD-FDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred eeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeC-CCCcEEEEEecCccceeEEEEecCCC
Confidence 588899999 7999999999999999998764433222222456899999998 778877776643 5677787654
Q ss_pred CCCcccc------------------ccc---------CcceeEe-----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 531 MPPSIRG------------------MHY---------GAGTVTF-----DEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 531 ~~~~~~~------------------~~~---------~~~~~~~-----~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
.--.+.+ ..+ ......| .|..-|.++.++|+|..|+++|.||.|.+||
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 2111110 000 0011122 2445699999999999999999999999999
Q ss_pred CCCCcEEEEEc--cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--CCeEEEEEecCCCEEEE
Q 004969 579 INSGRRLQVFA--DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--KGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 579 l~s~~~v~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--~~~vsl~fSpdg~~Las 654 (721)
-.+|+.+..+. .+|++.|.+++|+||+ ..++|++.|.++||||+.+.++...+.+... ..-+.+.|. ...|++
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lIt 295 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLIT 295 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEE
Confidence 99999999998 2499999999999999 8999999999999999999877666655443 233466776 778899
Q ss_pred EeCCCcEEEEEcC-C---CcccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969 655 KGSGTSMFVQSLR-G---DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 705 (721)
Q Consensus 655 gs~Dg~I~VWDl~-g---~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k 705 (721)
.+.+|.|.+++.. . +.+.+|...|.++..+|++ ..|.||+....
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-------~~i~SgsyDG~ 343 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-------KTIYSGSYDGH 343 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCC-------CEEEeeccCce
Confidence 9999999999876 2 2367888899999999999 78888887733
No 81
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=9.8e-20 Score=193.04 Aligned_cols=237 Identities=20% Similarity=0.264 Sum_probs=182.4
Q ss_pred CCccCeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 451 NRSFRPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 451 ~~~~~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
....+|++++|||... +++|+|...|+|-+||+.+.+ .-..+....|..+|.++.|+|.+...+++.|.||+|+.-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 3445899999999766 799999999999999995221 2222333489999999999999999999999999999999
Q ss_pred cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCC
Q 004969 528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg 605 (721)
+++...... ... .....+.++.++...+.++.++.=|...+||++++.. ...+. .|...|.+|+++|-.
T Consensus 264 ~~~~i~e~v--------~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 264 FEGNISEEV--------LSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVC 334 (498)
T ss_pred ecchhhHHH--------hhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCC
Confidence 998543111 111 1122367888888888899888877999999998765 44444 488999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CC---cc--ccc-
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GD---PF--RDF- 674 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~---~l--~~~- 674 (721)
+.++||+|.|++.+|||+|.-... +....-.|...| +..|||.|-.|+|.+.|+.|+|||.. +. +. -.|
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 999999999999999999974332 234445566677 89999988889999999999999984 11 11 111
Q ss_pred -----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 675 -----NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 675 -----~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+...+.|+|+. ++++.|-.-
T Consensus 415 ~~t~RwlT~fKA~W~P~~-------~li~vg~~~ 441 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDY-------NLIVVGRYP 441 (498)
T ss_pred CcccccccchhheeCCCc-------cEEEEeccC
Confidence 2367778999988 777777665
No 82
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=176.94 Aligned_cols=178 Identities=20% Similarity=0.333 Sum_probs=153.3
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNI 574 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~I 574 (721)
+|+++|.++.|+ -++++.++++.|.+|++|+...+.. ..++. |...|..++.+.++..|+++|.|+.|
T Consensus 15 ~~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~l----------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 15 CAQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGAL----------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred ccccceEEEEEc-cCCCEEEEcCCCceEEeecccccce----------eeeecCCCceeeeccccccccccccCCCCceE
Confidence 788999999998 8999999999999999999988654 22332 33468999999999999999999999
Q ss_pred EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL 653 (721)
Q Consensus 575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La 653 (721)
.+||+.+|+.++.|.+ |.+.|+.++|+.+. ..+++|+.|.++|+||.|+....|+..+......+ ++.. .+..|+
T Consensus 84 ~vwDV~TGkv~Rr~rg-H~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRG-HLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIV 159 (307)
T ss_pred EEEEcccCeeeeeccc-ccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEE
Confidence 9999999999999998 99999999999988 89999999999999999998888888776555555 5554 478899
Q ss_pred EEeCCCcEEEEEcC-CCccc-ccccCeEEEEECCCCC
Q 004969 654 GKGSGTSMFVQSLR-GDPFR-DFNMSILAAYTRPSSK 688 (721)
Q Consensus 654 sgs~Dg~I~VWDl~-g~~l~-~~~~~V~~v~fsP~~~ 688 (721)
+|+.||+++.||++ |.... -+..+|+++.|+|++.
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGN 196 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCC
Confidence 99999999999999 44332 3367999999999993
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.5e-18 Score=167.90 Aligned_cols=226 Identities=15% Similarity=0.258 Sum_probs=172.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC------Ce-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------EN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t------g~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG 521 (721)
.|++++|+| .|.+.++|+...+.+|..... +. .+..-+...|.+.|.|.+|+ +.+.++++|+.|.
T Consensus 34 airav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-~~geliatgsndk 111 (350)
T KOG0641|consen 34 AIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-PCGELIATGSNDK 111 (350)
T ss_pred heeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-CccCeEEecCCCc
Confidence 589999999 999999999999999875421 11 12222234788999999998 7999999999999
Q ss_pred eEEEEEcCCCCCccccc----ccCc--------------------------------------cee-EeccCCCeEEE-E
Q 004969 522 SLKLYDIRHMPPSIRGM----HYGA--------------------------------------GTV-TFDEFDQLTSV-H 557 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~----~~~~--------------------------------------~~~-~~~~~~~V~sv-~ 557 (721)
+|++.-++...+..... ..+. +.. ...|.+.|.++ .
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys 191 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS 191 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence 99998776433211100 0000 000 00133445444 3
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE
Q 004969 558 VNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631 (721)
Q Consensus 558 ~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~ 631 (721)
| ++-.|++|+.|.+||+||++-..++.++.. ...+.|.+++..|.| +++++|-.|.+..+||+|.+.. +
T Consensus 192 w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~--i 266 (350)
T KOG0641|consen 192 W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM--I 266 (350)
T ss_pred e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce--e
Confidence 4 566788888999999999999888887652 124679999999999 8999999999999999999854 6
Q ss_pred EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc--------ccccccCeEEEEECCCC
Q 004969 632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP--------FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--------l~~~~~~V~~v~fsP~~ 687 (721)
..+..|...+ ++.|||...|+++++.|..|++-|+.|+. +..|+..+..+.|||+.
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc
Confidence 7777888887 99999999999999999999999999764 34566788889999997
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=201.88 Aligned_cols=190 Identities=19% Similarity=0.325 Sum_probs=163.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+.+..|+. .++++|+.|++|++|+..++..+.. +. ||.+.|+++++. ..++++++|+.|.++++||..++++.
T Consensus 211 ~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~--GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 211 VLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLV--GHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred hhhheeec---CeEEecCCCceeEEeecccceEEEeecc--CCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEE
Confidence 67788875 8899999999999999999988777 66 999999999995 57899999999999999999997762
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.+...|...|.++.. ....+++|+.|.+|++|++.++..+..+.+ |.++|+++..+ + .++++|+.
T Consensus 285 ---------~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~-~~lvsgs~ 349 (537)
T KOG0274|consen 285 ---------HSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--E-PLLVSGSY 349 (537)
T ss_pred ---------EEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--C-CEEEEEec
Confidence 112235556677776 556777778999999999999999999998 99999999998 4 69999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
|++|++||++++++ +..+.+|...| ++.+.+. .++++|+.|+.|++||+++.
T Consensus 350 d~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred CceEEEEEhhhcee--eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 99999999998855 77788899998 7877655 89999999999999999854
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.83 E-value=4e-20 Score=182.93 Aligned_cols=223 Identities=13% Similarity=0.200 Sum_probs=188.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|++...+. +..+.|+++.|-+-+|||.-+|..+..+ .|..-|.+++|+ .+.++|++|+.+..+||||++..+..
T Consensus 61 avw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf---~hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 61 AVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSF---EHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred ceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhh---hhhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCC
Confidence 588877777 7788999999999999999999998888 577889999998 89999999999999999999986654
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....+ |.+.|..+-|...+..|++++.|++||+||.++++.++++. ...+|+++..+++| .++|-..
T Consensus 136 p~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG--~ilTia~ 203 (334)
T KOG0278|consen 136 PKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDG--RILTIAY 203 (334)
T ss_pred chhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCC--CEEEEec
Confidence 443333 44567888998899999999999999999999999999998 78899999999999 3556667
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCCCCc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~~~~ 689 (721)
.+.|++||..+-.....+.++ ..+.+.+.+|+...+++|+.|..++.||.. |.. .++|.++|.++.|+|+|
T Consensus 204 gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-- 279 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-- 279 (334)
T ss_pred CceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC--
Confidence 788999999986543333333 334478899999999999999999999987 222 47888999999999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
.+.|+||..
T Consensus 280 -----E~yAsGSED 288 (334)
T KOG0278|consen 280 -----ELYASGSED 288 (334)
T ss_pred -----ceeeccCCC
Confidence 899999887
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=6.3e-19 Score=187.18 Aligned_cols=218 Identities=15% Similarity=0.189 Sum_probs=176.6
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
..+.+++.+| |+++||+|+.|..|.||+..+.+.++.++ +|.+.|.+++|- .....+++++.|++|++|+++....
T Consensus 203 keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 203 KEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFK--GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhccc--ccccceeeeeee-cCccceeeeecCCceEEEehhHhHH
Confidence 3689999999 99999999999999999999999999887 999999999996 6778899999999999999987432
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
+ ...|.|++.|.++........+-+|+.|.++++|++.. +....+.+ |.+.+.|++|-.+. .|++||
T Consensus 279 -v--------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg-~~~sidcv~~In~~--HfvsGS 345 (479)
T KOG0299|consen 279 -V--------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRG-GEGSIDCVAFINDE--HFVSGS 345 (479)
T ss_pred -H--------HHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeC-CCCCeeeEEEeccc--ceeecc
Confidence 1 22456677788888877677777777999999999953 33345555 88899999998764 899999
Q ss_pred CCCcEEEEECCCCCceeEEEecCC----------CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--ccc-----ccc
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSS----------KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFR-----DFN 675 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~----------~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~-----~~~ 675 (721)
.+|.|.+|++...++..+....++ ..++ +++..|....+++|+.+|.|++|-+... .+. .+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 999999999998755433332211 1145 8999999999999999999999998732 222 235
Q ss_pred cCeEEEEECCCCC
Q 004969 676 MSILAAYTRPSSK 688 (721)
Q Consensus 676 ~~V~~v~fsP~~~ 688 (721)
+.|+++.|+++++
T Consensus 426 GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 426 GFVNSLAFSNSGK 438 (479)
T ss_pred cEEEEEEEccCCC
Confidence 6899999999993
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.3e-20 Score=199.80 Aligned_cols=226 Identities=17% Similarity=0.239 Sum_probs=181.4
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 458 QFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
++..++..+++|++|+.||.|++|+..... .+..++ .|..+|..+... .+++.|+|+|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--HHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh--hhHhHHhhHHhh-cCCCceEEecCCceEEEeecccC
Confidence 455555577889999999999999986432 244444 789999999887 78889999999999999999875
Q ss_pred CCcccccccCcceeEeccCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCC--cEEEEE--------ccccCCCeEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHV-NSMDELFLASGYSKNIALYDINSG--RRLQVF--------ADMHKEHINVVK 600 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~-sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l--------~~~h~~~V~sI~ 600 (721)
.. ......-.|.+.|.++++ .++...+++||-|+.|.+||+.++ +.+..+ ..++...|++++
T Consensus 106 ~~-------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 106 NT-------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred cc-------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 31 111223356788999999 677788888889999999999987 333332 214888999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccc
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFN 675 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~ 675 (721)
.++.| ..+++|+..+.+++||.++.+ .+..+.+|...+ .+..++||..+++++.||+|++||+..+ ++..|.
T Consensus 179 ~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 179 MNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred cCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 99999 899999999999999999974 467778999988 8999999999999999999999999833 356667
Q ss_pred cCeEEEEECCCCCcccccccEEEEecCC
Q 004969 676 MSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 676 ~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..|.++..+|.- ..+-+|+..
T Consensus 256 e~VWaL~~~~sf-------~~vYsG~rd 276 (735)
T KOG0308|consen 256 EGVWALQSSPSF-------THVYSGGRD 276 (735)
T ss_pred CceEEEeeCCCc-------ceEEecCCC
Confidence 779999999877 666666665
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=1.1e-19 Score=179.72 Aligned_cols=194 Identities=15% Similarity=0.231 Sum_probs=166.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
-|++++|+. |.++|++|+.+..++|||++..+ +...+. +|.+.|..+.|+ ...+.++++++|++||+||.+++..
T Consensus 102 ivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~--ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 102 IVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS--GHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred eeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc--CCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcE
Confidence 489999999 89999999999999999998654 334444 999999999999 6777888889999999999999764
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
+.++....+|+++.++++|. +++....+.|.+||..+-..++.+. -...|.+...+|+. ..+++|+
T Consensus 178 ----------v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k-~~fVaGg 243 (334)
T KOG0278|consen 178 ----------VQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKK-EFFVAGG 243 (334)
T ss_pred ----------EEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc--CccccccccccCCC-ceEEecC
Confidence 44556667899999987665 5556667889999999999998887 67789999999998 7999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|..++.||..++...-.+ ..+|.+++ ++.|+|+|...++|+.||+|++|...
T Consensus 244 ed~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred cceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 9999999999998653332 47888888 99999999999999999999999976
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=7.7e-20 Score=195.06 Aligned_cols=166 Identities=19% Similarity=0.387 Sum_probs=143.9
Q ss_pred EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE
Q 004969 488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA 567 (721)
Q Consensus 488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls 567 (721)
.+.++. ||...|+++.|.|..+.+|++++.|+.|+||++......++... .|..+|.+++|+..+..|++
T Consensus 206 ~~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 206 LSHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred heeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeee
Confidence 344554 99999999999987999999999999999999988544333322 34467899999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969 568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS 646 (721)
Q Consensus 568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS 646 (721)
+|.|+.+++||.++|+.+..|. ....++++.|+|++++.|++|+.|+.|+.||+|+++. +.....|-+.+ .+.|-
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGAILDITFV 351 (503)
T ss_pred eecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhheeeeEEc
Confidence 9999999999999999999997 5678899999999989999999999999999999965 44455666666 89999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~ 667 (721)
++|+++++++.|++++||+.+
T Consensus 352 ~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred cCCceEeeeccCccEEEEEcC
Confidence 999999999999999999965
No 90
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=185.05 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=180.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.|++-+| +|.+++.|+..|.|++|.+.+|..+..+. +|-.+|+++.|+ .++.+++|||.||.|.+|.+..--..
T Consensus 83 ~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 83 PVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH--hhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccc
Confidence 488999999 99999999999999999999999998886 899999999998 89999999999999999998652111
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.... .......| .|.-+|+++...+. ...+++++.|.++++||+..|..+.++. ....+.+++..|.+ +.+..
T Consensus 159 ~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae-~~~yi 234 (476)
T KOG0646|consen 159 DNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAE-RVVYI 234 (476)
T ss_pred ccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccc-cEEEe
Confidence 1111 11122333 35567999888654 4789999999999999999999999887 78899999999998 89999
Q ss_pred EECCCcEEEEECCCCC--------------ceeEEEecCCCC--eE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-cc-
Q 004969 612 SSFDQDVKLWDLRQKP--------------IQPCYTASSSKG--NV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FR- 672 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~--------------~~~~~~~~~~~~--~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~- 672 (721)
|+.+|.|.+.++.+.. ......+.+|.+ .+ +++++-||..|++|+.||.+.|||+..+. ++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999999998875432 112334456665 55 99999999999999999999999998443 23
Q ss_pred --ccccCeEEEEECCCC
Q 004969 673 --DFNMSILAAYTRPSS 687 (721)
Q Consensus 673 --~~~~~V~~v~fsP~~ 687 (721)
...++|+.+.+.|-.
T Consensus 315 l~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINPLE 331 (476)
T ss_pred HhhhccccceeEeeccc
Confidence 246788888887654
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.3e-19 Score=179.08 Aligned_cols=232 Identities=14% Similarity=0.207 Sum_probs=183.9
Q ss_pred eccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969 441 TVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (721)
Q Consensus 441 ~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D 520 (721)
...||.+| |+.++... ....+.+++.|.+.+||.+++|.++.++. ||.+.|++++|+ +.+.++++++.|
T Consensus 143 e~~GHkDG-------iW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh-~s~~L~lTaSGD 211 (481)
T KOG0300|consen 143 ELEGHKDG-------IWHVAADS-TQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFH-NSGLLLLTASGD 211 (481)
T ss_pred hhcccccc-------eeeehhhc-CCcceeecccccceeEEeeccccceeeec--ccccceeeEEec-cccceEEEccCC
Confidence 34577764 67777777 56689999999999999999999999998 999999999998 788999999999
Q ss_pred CeEEEEEcCC----CCC----------cc-------c------ccccCc---ceeEe-ccCCCeEEEEEecCCCEEEEEe
Q 004969 521 GSLKLYDIRH----MPP----------SI-------R------GMHYGA---GTVTF-DEFDQLTSVHVNSMDELFLASG 569 (721)
Q Consensus 521 GtVrIWDi~~----~~~----------~~-------~------~~~~~~---~~~~~-~~~~~V~sv~~sp~~~~lls~g 569 (721)
++-.||...- .++ .. . ...++. ....+ .|...|.+..|-..++.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 9999997321 110 00 0 000010 11122 2556688888988999999999
Q ss_pred CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC
Q 004969 570 YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD 648 (721)
Q Consensus 570 ~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd 648 (721)
.|.+..+||+++|+++..+.| |....+.++-+|.. +++++++.|.+.|+||.|. ....+..+.+|...+ ++.|..+
T Consensus 292 WDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccccceeeeeccCceeccccC-cchhccccccCCcc-eEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecC
Confidence 999999999999999999998 99999999999998 8999999999999999995 345577788999888 7888764
Q ss_pred CCEEEEEeCCCcEEEEEcC--CCccccc--ccCeEEEEECCCC
Q 004969 649 DHYLLGKGSGTSMFVQSLR--GDPFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 649 g~~Lasgs~Dg~I~VWDl~--g~~l~~~--~~~V~~v~fsP~~ 687 (721)
..+++|+.|.+|+|||++ ..++..+ ..+++.++.+...
T Consensus 369 -d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGH 410 (481)
T ss_pred -CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCC
Confidence 567889999999999998 3344443 4567777777666
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=4.8e-18 Score=169.83 Aligned_cols=233 Identities=20% Similarity=0.190 Sum_probs=179.3
Q ss_pred ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEE
Q 004969 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYD 527 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWD 527 (721)
+-+|+|++.+- +.+++++|+.|.++++||+++|+++..++. ..+|..+.|+ .++++++.+.+ .+.|.++|
T Consensus 52 tGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k~---~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fd 126 (327)
T KOG0643|consen 52 TGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWKT---NSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFD 126 (327)
T ss_pred CceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEeec---CCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEE
Confidence 34799999999 889999999999999999999999999864 4789999998 67777666543 47899999
Q ss_pred cCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 528 IRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
++...... ....+... ..+.+.++.+-|.|-+..+++|..||.|..||+++|+....-...|...|+.++++|+.
T Consensus 127 i~~~~~~~---~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~- 202 (327)
T KOG0643|consen 127 IRDDSSDI---DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR- 202 (327)
T ss_pred ccCChhhh---cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-
Confidence 98643211 11111222 23446799999999999999999999999999999865544433499999999999999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEE--EcC-C---------------
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQ--SLR-G--------------- 668 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VW--Dl~-g--------------- 668 (721)
.+++|++.|.+-++||.++-..+..+. ......+.+++|-..+++.|+.....-|= +.+ |
T Consensus 203 T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 203 TYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred ceEEecccCccceeeeccceeeEEEee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 899999999999999999976544443 33344488999988777766544322221 111 1
Q ss_pred CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 669 DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 669 ~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+++|-++|++++|||+| ...+||+..
T Consensus 281 grvkGHFGPINsvAfhPdG-------ksYsSGGED 308 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDG-------KSYSSGGED 308 (327)
T ss_pred ccccccccCcceeEECCCC-------cccccCCCC
Confidence 1366778899999999999 888888876
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.1e-19 Score=200.31 Aligned_cols=200 Identities=17% Similarity=0.296 Sum_probs=167.8
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
|.+.+.++.||+....+|++|++||+|++||+...+...++. +...+|.+|+|+|..+..++++.+.|++++||++..
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR--SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc--ccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 445799999999999999999999999999999888777776 667899999999999999999999999999999986
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
......+. .|.++|.++.|||++.+|++||.|++|+|||+.+++. ..++. ...+|.+|+|-|+.++.|
T Consensus 210 ~r~~~k~~--------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 210 DRCEKKLT--------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHL 279 (839)
T ss_pred hhHHHHhh--------cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchh
Confidence 65333322 3557889999999999999999999999999997553 44444 567899999999998899
Q ss_pred EEEEC--CCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEE
Q 004969 610 ATSSF--DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 610 aSgs~--DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VW 664 (721)
|+++. |-.|+|||++.. ..|-.++..|...+ .++|.. |...+.+++.||.+..-
T Consensus 280 Atcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred hhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 98875 778999999974 56777888888888 788865 55677888888887543
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3.1e-19 Score=186.85 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=166.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP- 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~- 533 (721)
.|.-+.||| |.+++++++.|..+.+||+.+|.....++. +|...+.+.+|. +++..+++|+.|+++..||+++...
T Consensus 271 ~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 271 PVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPS-GLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhccc-CcCCCcceeEEc-cCCceeEecCCCCcEEEecCCcchhh
Confidence 588999999 889999999999999999999999988875 577899999999 7999999999999999999986432
Q ss_pred ccccc-----------ccCc---------cee-----------EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969 534 SIRGM-----------HYGA---------GTV-----------TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (721)
Q Consensus 534 ~~~~~-----------~~~~---------~~~-----------~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~ 582 (721)
..... .... ... ......+|++++++.++.++++.-.+..+++||+...
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 00000 0000 000 1124467999999988888888889999999999988
Q ss_pred cEEEEEccccCCC--eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCC
Q 004969 583 RRLQVFADMHKEH--INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSG 658 (721)
Q Consensus 583 ~~v~~l~~~h~~~--V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~D 658 (721)
+.++.+.| |+.. +-.-+|.-....++++||.|+.|+||+.++++. +..+.||...+ +++|+|. -.++|+|+.|
T Consensus 428 ~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 428 KLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred hHHHHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 88988887 7654 334456544447999999999999999999954 77888999988 9999994 5678999999
Q ss_pred CcEEEEEcC
Q 004969 659 TSMFVQSLR 667 (721)
Q Consensus 659 g~I~VWDl~ 667 (721)
|+|+||...
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999875
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.9e-18 Score=171.92 Aligned_cols=226 Identities=15% Similarity=0.214 Sum_probs=175.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++.|+| .++.|++++.||.+++|++........+ .|..++++.+|. +...+++|+-||.|+.+|+.++..
T Consensus 15 ~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 15 GISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc-
Confidence 488999998 6677778889999999999877555555 578899999996 577899999999999999999654
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
...-.|..+|.++...+..+.+++||.|++|++||.+....+..+. ....|.++..+ | +.|++|+.
T Consensus 88 ---------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~--g-~~LvVg~~ 153 (323)
T KOG1036|consen 88 ---------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVS--G-NRLVVGTS 153 (323)
T ss_pred ---------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEecc--C-CEEEEeec
Confidence 2333566789999999999999999999999999999866666655 44578888775 3 57888888
Q ss_pred CCcEEEEECCCCCc-------------eeE---------------------------------EEecCCC---------C
Q 004969 615 DQDVKLWDLRQKPI-------------QPC---------------------------------YTASSSK---------G 639 (721)
Q Consensus 615 DgtIrIWDlrs~~~-------------~~~---------------------------------~~~~~~~---------~ 639 (721)
|..|.+||+|+... ..+ +.+..|. -
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 99999999886310 000 1111111 0
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccc---ccccCeEEEEECCCCCcccccccEEEEecCCCcccc
Q 004969 640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 708 (721)
Q Consensus 640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s 708 (721)
++ +++|+|--..++||+.||.|.+||+. .+.++ .+..+|..++|+-++ .+||.|+....+.-
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-------~~LAia~sy~ye~~ 300 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-------SLLAIASSYQYERA 300 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-------CeEEEEechhhhcC
Confidence 23 78999999999999999999999987 33344 445679999999999 99999988644443
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=8e-19 Score=182.31 Aligned_cols=196 Identities=20% Similarity=0.297 Sum_probs=156.1
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+++.|||.....+++|..-+.|++|...+|... -..+..+|..+|-.++|+|.....|+|||.||+|+|||++.+..
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-- 292 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-- 292 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--
Confidence 679999976777899988899999999887653 23344589999999999999999999999999999999999754
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS---GRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
......-.|.+.|+.+.|+...+.+++|+.||+++|||+|+ ++++..|+. |..+|++|.|+|.....|+++
T Consensus 293 -----~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 293 -----KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred -----cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEec
Confidence 22334455777899999999989888999999999999995 678999997 999999999999987899999
Q ss_pred ECCCcEEEEECCCCCc-----------------eeEEEecCCCCeEEEEEecCC-CEEEEEeCCCc
Q 004969 613 SFDQDVKLWDLRQKPI-----------------QPCYTASSSKGNVMVCFSPDD-HYLLGKGSGTS 660 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~-----------------~~~~~~~~~~~~vsl~fSpdg-~~Lasgs~Dg~ 660 (721)
+.|.+|.+||+.-..- +.++...+....--+.|+++- .++++.+.||.
T Consensus 367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 9999999999864211 112222222222268999865 46666666663
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.9e-18 Score=173.93 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=154.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+++++.+- .++|+|+.|-+|+|||+.+......+- .|.+.|+++.|.++- ...|++|+.||.|.+|+...-..
T Consensus 45 sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 45 SITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred ceeEEEecc---eeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 689999865 999999999999999999888877776 789999999997443 24899999999999999987422
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc---------------------
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH--------------------- 592 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h--------------------- 592 (721)
+.. ...|..+|+.+++||.+..-++.|.|+.+++||+-+|+.-..+.-.+
T Consensus 120 -~~s--------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 120 -LKS--------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred -eee--------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 111 22355679999999999999999999999999998876544333111
Q ss_pred -----------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEE--EecCCCEE
Q 004969 593 -----------------KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVC--FSPDDHYL 652 (721)
Q Consensus 593 -----------------~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~--fSpdg~~L 652 (721)
...+.++.|... ..+++|+.|+.|++||..+. .+...+.+|...+ .+. -.|++.||
T Consensus 191 i~i~q~d~A~v~~~i~~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENPKRILCATFLDG--SELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred EEEEecccHhHhhhhhccccceeeeecCC--ceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEecCCceEE
Confidence 112333334322 36889999999999999986 4567778888888 444 35688999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 004969 653 LGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 653 asgs~Dg~I~VWDl~g~ 669 (721)
++++.||.|+|||++..
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999999843
No 98
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.9e-18 Score=182.82 Aligned_cols=201 Identities=20% Similarity=0.282 Sum_probs=165.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|..++|+..-.+.||+||.|.+|++||+.+|++..++. .|.+.|.+++|+|..+.+|++|+.|++|.+.|.+....
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~- 321 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN- 321 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-
Confidence 577888888777899999999999999999999999987 78899999999999999999999999999999996322
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
....+...+.|-.++|++.... ++++..||+|+-+|+|+ ++++++++. |.+.|.++++++.-+.+++|+
T Consensus 322 --------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 322 --------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred --------cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcceeec
Confidence 2334555678999999988765 55555799999999997 599999996 999999999999999999999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~ 667 (721)
+.|++|++|++.......+....-.-+.. |.++.|+-. +++.|+..+.++|||+.
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 99999999999865443333222222334 677777654 55667778889999987
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.1e-18 Score=191.59 Aligned_cols=206 Identities=17% Similarity=0.257 Sum_probs=168.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
|..+.... +++.+++++.|-+|++|+...+ -+..++. .|.+.|.++++-.++..++||||-|+.|.+||++++..
T Consensus 76 VNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir--~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 76 VNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIR--THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred HhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhh--cccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence 34445555 7788999999999999999877 4566666 89999999998447788999999999999999998743
Q ss_pred -cccccccCc-ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 534 -SIRGMHYGA-GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 -~~~~~~~~~-~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.+....... ......+...|++++.++.+..+++||..+.+++||.++++.+..+.| |...|..+-.++|| +.+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDG-t~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDG-TRLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCC-CeEee
Confidence 111111111 111114567899999999998899999999999999999999999997 99999999999999 89999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+|.||+|++||+...+|... +..|...+ ++.-+|+-.++++|+.||.|+.=|++.
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T--~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLAT--YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred cCCCceEEeeeccccceeee--EEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999877544 44455555 888999999999999999999988873
No 100
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.78 E-value=3.7e-17 Score=169.56 Aligned_cols=196 Identities=16% Similarity=0.246 Sum_probs=160.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|+|+.|+. ++.+||+|..+|.|+||...+|.....+. .....|-=+.|+ +.+..|++|+.||.+-+|.+..+..
T Consensus 108 SVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~- 182 (399)
T KOG0296|consen 108 SVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQAL- 182 (399)
T ss_pred ceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEec-ccccEEEeecCCCcEEEEECCCcce-
Confidence 599999999 99999999999999999999999888775 234566678898 5889999999999999999988422
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-------------------------
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA------------------------- 589 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------------------- 589 (721)
. .+-..|..++++=.|.|+|..++++..||+|++||+.+++++..+.
T Consensus 183 ~--------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 183 C--------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred e--------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 1 2223355667788888888888888888888888888877655321
Q ss_pred ---------------------------------------------------------------------cccCCCeEEEE
Q 004969 590 ---------------------------------------------------------------------DMHKEHINVVK 600 (721)
Q Consensus 590 ---------------------------------------------------------------------~~h~~~V~sI~ 600 (721)
-.|...|..+.
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK 334 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence 01456677888
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|-+ . .++++++.+|.|+.||.|++++ .+...+|...+ .++++|++++++++|.|++.+||++.
T Consensus 335 w~~-t-~~l~t~c~~g~v~~wDaRtG~l--~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-T-DYLLTACANGKVRQWDARTGQL--KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-c-chheeeccCceEEeeeccccce--EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 877 3 5788999999999999999955 66778888888 99999999999999999999999864
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=176.74 Aligned_cols=194 Identities=19% Similarity=0.309 Sum_probs=152.1
Q ss_pred CCCEEEEEECCCeEEEEECCC----------------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 465 ISCLMVFGTLDGEIVVVNHEN----------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~t----------------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
+..+.++-+..|.|+||++.. .+.+.++. +|.+.-++++|+|.....|+||..-+.|++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~--ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN--GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEP 241 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec--ccCccceeeecccccccccccCccccceEeeee
Confidence 456777888899999999742 22344444 888899999999877778999999999999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
.++.-.+. ......|...|-.++|+|.. +.|++++.||+|+|||+|++. ....+..+|.+.|+.|.|+..-+
T Consensus 242 ~~g~W~vd------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 242 STGSWKVD------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred ccCceeec------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 88654221 11122366789999999975 566777789999999999872 22222235999999999999884
Q ss_pred cEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969 607 SIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~ 667 (721)
+||+|+.||+++|||+|+-+. .++..+..|..++ ++.|+| +...|++++.|+.|.+||+.
T Consensus 316 -lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 316 -LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred -eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 999999999999999997432 4567777788888 999999 45677888899999999986
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=2.1e-17 Score=183.70 Aligned_cols=235 Identities=17% Similarity=0.275 Sum_probs=191.7
Q ss_pred eeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE
Q 004969 437 LHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (721)
Q Consensus 437 ~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS 516 (721)
...+...||.. -|++++++. +...+++|+ .+.|+||+..+.++++++.. +.+.+..|. |.+.++++
T Consensus 364 ~~~i~~~GHR~-------dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fv-pgd~~Iv~ 429 (888)
T KOG0306|consen 364 TSNIEIGGHRS-------DVRSLCVSS-DSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFV-PGDRYIVL 429 (888)
T ss_pred cceeeeccchh-------heeEEEeec-CceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEec-CCCceEEE
Confidence 33445555544 589999999 766666665 56799999999999999973 488999998 67899999
Q ss_pred EeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CcE--E----
Q 004969 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-----GRR--L---- 585 (721)
Q Consensus 517 gs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-----~~~--v---- 585 (721)
|...|.+.+||+...... .. .-.|.+.|++++..|++..+++||.|++|++||..- |.. +
T Consensus 430 G~k~Gel~vfdlaS~~l~--------Et-i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLV--------ET-IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred eccCCceEEEEeehhhhh--------hh-hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 999999999999885431 11 124677899999999999999999999999999752 211 1
Q ss_pred --EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969 586 --QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF 662 (721)
Q Consensus 586 --~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~ 662 (721)
+++. -...|.|+.++||| .+++++--|.+|+||-+.+-+. -..+.||.-++ ++..|||+..++|||.|.+|+
T Consensus 501 ~~rtLe--l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 501 HTRTLE--LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred cceEEe--ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 1222 45789999999999 8999999999999999998643 55778898888 999999999999999999999
Q ss_pred EEEcC-CC---cccccccCeEEEEECCCCCcccccccEEEEecCCCcc
Q 004969 663 VQSLR-GD---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 706 (721)
Q Consensus 663 VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke 706 (721)
+|-+. |+ .+-.|+.+|+++.|-|.. .++-+||...+.
T Consensus 576 iWGLdFGDCHKS~fAHdDSvm~V~F~P~~-------~~FFt~gKD~kv 616 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFFAHDDSVMSVQFLPKT-------HLFFTCGKDGKV 616 (888)
T ss_pred EeccccchhhhhhhcccCceeEEEEcccc-------eeEEEecCcceE
Confidence 99988 43 466778899999999998 888888887443
No 103
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=6.7e-18 Score=168.37 Aligned_cols=191 Identities=17% Similarity=0.259 Sum_probs=153.6
Q ss_pred CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCc
Q 004969 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKN 573 (721)
Q Consensus 495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~ 573 (721)
.+|...|.+|+|+ .+|..|++|+.|+++++|+++..+.. .......|.+.|-.++|+|.. +.+++++.|++
T Consensus 17 ~~~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~-------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFR-------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred hhhhhcceEEEEc-ccCceeeecccCCceEEEEecchhhh-------hhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 3888999999998 89999999999999999999886431 112233466678888888765 67778888999
Q ss_pred EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-------------------------
Q 004969 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI------------------------- 628 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~------------------------- 628 (721)
|++||+++++++..... .+.=.-+.|+|+| .+++.++.|..|.+.|.++.+.
T Consensus 89 ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIET--KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEEEEeccCcEEEEeec--cCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence 99999999999998873 4444558899999 7999999999999999876321
Q ss_pred --------------eeEEEecCCCCe-EEEEEecCCCEEEEEeCCCcEEEEEcC----CCcccccccCeEEEEECCCCCc
Q 004969 629 --------------QPCYTASSSKGN-VMVCFSPDDHYLLGKGSGTSMFVQSLR----GDPFRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 629 --------------~~~~~~~~~~~~-vsl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~l~~~~~~V~~v~fsP~~~~ 689 (721)
.++..+..|... +++.|+|+|+|+|+|+.|-.+.+||+. -+.+..+.-+|..+.|+-++
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-- 243 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-- 243 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc--
Confidence 223333444433 389999999999999999999999987 34456667899999999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
.+||+||..
T Consensus 244 -----~~lASaSED 252 (313)
T KOG1407|consen 244 -----RMLASASED 252 (313)
T ss_pred -----ceeeccCcc
Confidence 999999987
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=175.84 Aligned_cols=234 Identities=15% Similarity=0.200 Sum_probs=188.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|+++.||| ...++++++.||+++||.+... ..++.+. -...+|.+.+|.|.....+++++.-.....||+.+.+
T Consensus 215 ~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 215 GITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 599999999 8899999999999999998732 2344443 2347899999995443499999999999999999866
Q ss_pred Ccc-cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 533 PSI-RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 533 ~~~-~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
... ....+.. ...+....++++++.++..|..|.|.+....+++.+.+++ -.+.|..++|+.++ ..+++
T Consensus 292 ~~k~~~~~g~e-------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSds-k~l~~ 361 (514)
T KOG2055|consen 292 VTKLKPPYGVE-------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDS-KELLA 361 (514)
T ss_pred cccccCCCCcc-------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCC-cEEEE
Confidence 521 1222211 1235677888999999999999999999999999999998 67899999999999 77888
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-------CCccccc---ccCeEEE
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-------GDPFRDF---NMSILAA 681 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-------g~~l~~~---~~~V~~v 681 (721)
++.+|.|.+||++...+...+.-.+.....+++.|++|.|||+|+..|.|.|||.. -+|++.+ ...|..+
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 88899999999999988777777776666789999999999999999999999965 1233333 4689999
Q ss_pred EECCCCCcccccccEEEEecCCCcccc
Q 004969 682 YTRPSSKSEIVKVNLLASTDHCDKECS 708 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~~ke~s 708 (721)
.|+|++ .+||-+|...+...
T Consensus 442 ~Fn~d~-------qiLAiaS~~~knal 461 (514)
T KOG2055|consen 442 QFNHDA-------QILAIASRVKKNAL 461 (514)
T ss_pred eeCcch-------hhhhhhhhccccce
Confidence 999999 99999999844443
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.4e-19 Score=195.72 Aligned_cols=217 Identities=19% Similarity=0.275 Sum_probs=182.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++..-. .+..+++|+.|-.+-+|.+.....+..+. +|..+|-++.|+ ....+|++|+.+|+|++||++..+.
T Consensus 30 av~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~--~hespIeSl~f~-~~E~LlaagsasgtiK~wDleeAk~- 104 (825)
T KOG0267|consen 30 AVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLT--GHESPIESLTFD-TSERLLAAGSASGTIKVWDLEEAKI- 104 (825)
T ss_pred hhceeeeec-cceeeccCCCceeeccccccCCchhheee--ccCCcceeeecC-cchhhhcccccCCceeeeehhhhhh-
Confidence 455666534 67889999999999999987666666555 999999999998 7788999999999999999997543
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
+.. -+.|...+.++.|||-+.+++.++.|+.+++||++..-+.+.+.+ |...|..+.|+|+| .++++|+.
T Consensus 105 vrt--------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~G-r~v~~g~e 174 (825)
T KOG0267|consen 105 VRT--------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDG-RWVASGGE 174 (825)
T ss_pred hhh--------hhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCC-ceeeccCC
Confidence 222 233556789999999999998888999999999998889999998 99999999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~ 688 (721)
|.+++|||.+.++. ...+..|.+.+ ++.|+|..-.+++|+.|+++++||++.. ...+....|.+..|+|+++
T Consensus 175 d~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cceeeeeccccccc--ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence 99999999999866 44566677777 8999999999999999999999999822 1234456899999999993
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=4.6e-18 Score=172.64 Aligned_cols=226 Identities=18% Similarity=0.311 Sum_probs=182.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++.||| ...+|++|+.|++|+++|.......+.++......+|.++.|+ |.|++|+.|..-.++++||+++.++-
T Consensus 174 evn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 174 EVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred cccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEe
Confidence 488999999 8899999999999999999765443333332345689999999 78999999999999999999997652
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-CeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-~V~sI~fsPdg~~lLaSgs 613 (721)
+... ..-+|.+.|+++.+++.+...++++.||.|++||--+++++.++..+|.+ .|.+..|..+| +++++.+
T Consensus 252 vsan------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG 324 (430)
T KOG0640|consen 252 VSAN------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSG 324 (430)
T ss_pred eecC------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-eEEeecC
Confidence 2111 12346678999999999999999999999999999999999999877864 68889999999 8999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE----EEEEecCCCEEEEEe-CCCcEEEEEcCC-Cc----ccccccCeEEEEE
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV----MVCFSPDDHYLLGKG-SGTSMFVQSLRG-DP----FRDFNMSILAAYT 683 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v----sl~fSpdg~~Lasgs-~Dg~I~VWDl~g-~~----l~~~~~~V~~v~f 683 (721)
.|..+++|.+.++++...++..+..+.. ...|+....|++.-. ..+.+.-||-+. .. -.+|.+.+..+.-
T Consensus 325 ~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 9999999999999887777665544443 467888888887654 356788999872 21 3467888999888
Q ss_pred CCCCCc
Q 004969 684 RPSSKS 689 (721)
Q Consensus 684 sP~~~~ 689 (721)
+|..+.
T Consensus 405 SP~~p~ 410 (430)
T KOG0640|consen 405 SPVEPA 410 (430)
T ss_pred CCCCCc
Confidence 888753
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=5.7e-18 Score=180.77 Aligned_cols=227 Identities=15% Similarity=0.187 Sum_probs=179.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
|-++.++. ..+++.+|+. |.|+|||+... ..+..+......+.|.+...+ ++++.|++|+.-.++.|||+....
T Consensus 422 VcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeeeccCCC
Confidence 56677777 7788888874 67999999642 234444333345678888887 799999999999999999999865
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
+.++.-.... .-..+.++.+|+....+++..||.|.|||+.+...++.|++ |...+.||.++++| ..|-||
T Consensus 499 prikaeltss-------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dG-tklWTG 569 (705)
T KOG0639|consen 499 PRIKAELTSS-------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDG-TKLWTG 569 (705)
T ss_pred cchhhhcCCc-------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCC-ceeecC
Confidence 5332211111 01357889999999999999999999999999999999998 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC---cccccccCeEEEEECCCCCc
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD---PFRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~---~l~~~~~~V~~v~fsP~~~~ 689 (721)
+-|.+||-||+|++.....+ .-...+.++.++|++.|++.|=.++.+.|-...+. .+..|+..|.++.|.+.|
T Consensus 570 GlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG-- 645 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG-- 645 (705)
T ss_pred CCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC--
Confidence 99999999999998543333 33345568999999999999999999999988742 355668899999999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
..++|.+..
T Consensus 646 -----kwfvStGkD 654 (705)
T KOG0639|consen 646 -----KWFVSTGKD 654 (705)
T ss_pred -----ceeeecCch
Confidence 555555543
No 108
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=8.5e-18 Score=179.31 Aligned_cols=205 Identities=15% Similarity=0.225 Sum_probs=171.3
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
.++++|+..|+|+|||++...+.+.++ +|...|++|.++ ....+|++++..|-|.|..+.++.. ...
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lk--dh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~----------tt~ 158 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLK--DHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQK----------TTT 158 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhcc--CCcceeEEEEec-CCcceeEEeccCCcEEEEecccCcc----------ccc
Confidence 689999999999999999666666666 899999999998 7788999999999999999998654 233
Q ss_pred eccC--CCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969 547 FDEF--DQLTSVHVNSMDELFLA-SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 547 ~~~~--~~V~sv~~sp~~~~lls-~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl 623 (721)
|.+. ..|.-+.+++....+++ ++++|.|.+||.....++..+...|..+...|+|+|..+.+|++.+.|..|.+||+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 4333 23568899988776665 56789999999999889888887799999999999999899999999999999999
Q ss_pred CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCC
Q 004969 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPS 686 (721)
Q Consensus 624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~ 686 (721)
+..+...... -......++|+++|.+|++|+..|.|..||+++.+ +..|...|.+++|.|.
T Consensus 239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9875433333 23334479999999999999999999999999543 4466788999999886
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=1.1e-17 Score=184.93 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=171.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+.+++|-+.++.++++|+.|++|.+|......+..++. +|...|.++... .++. ++|||.|.++++|-...-..
T Consensus 61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--gH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~~~l~~-- 134 (745)
T KOG0301|consen 61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK--GHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRIGELVY-- 134 (745)
T ss_pred eccceeccccCcceEeecccceEEEEecCCCCchhhhh--ccccceeeeecC-CcCc-eEecccccceEEecchhhhc--
Confidence 34478887677789999999999999999999998888 999999999964 4444 99999999999999876322
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D 615 (721)
..-.|...|+++..-|.+ .+++|+.|++|++|.- ++.+++|.+ |.+.|+.+++-|++ .|++++.|
T Consensus 135 ---------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~--~flScsND 199 (745)
T KOG0301|consen 135 ---------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS--HFLSCSND 199 (745)
T ss_pred ---------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCC--CeEeecCC
Confidence 123455678998887776 9999999999999975 788999998 99999999999986 59999999
Q ss_pred CcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCcccccccCeEEEEECCCC
Q 004969 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDPFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 616 gtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~l~~~~~~V~~v~fsP~~ 687 (721)
|.|++|++. +.+ +....+|...+ +++..+++..+++++.|+++++|+.. ...+..-...++++.+-+++
T Consensus 200 g~Ir~w~~~-ge~--l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 200 GSIRLWDLD-GEV--LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred ceEEEEecc-Cce--eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCC
Confidence 999999994 433 67778898888 88988899999999999999999976 22222223478888887777
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=170.39 Aligned_cols=233 Identities=15% Similarity=0.281 Sum_probs=175.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
..|+.|++ .|.++|+|+.||.|.|||+.|....+.+. +|..+|++++|+ .++.+|+|+|.|..|++||+..+.+..
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls--aH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS--AHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh--ccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCcee
Confidence 57899999 99999999999999999999988777776 899999999998 899999999999999999999876522
Q ss_pred cccc-----------------------cCcceeEec----------cCCC----eEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 536 RGMH-----------------------YGAGTVTFD----------EFDQ----LTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 536 ~~~~-----------------------~~~~~~~~~----------~~~~----V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
.... .....+.+. ..+. ..+..|++.|.++++|...|.+.++|
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 1110 000111111 0000 12234677889999999999999999
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-------CCceeEEEec---CCCCeEEEEEecC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-------KPIQPCYTAS---SSKGNVMVCFSPD 648 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-------~~~~~~~~~~---~~~~~vsl~fSpd 648 (721)
..+-+++..++......|..+.++..| ..|+.-+.|+.||.|+++. +...+.+++. ....+.+++||.+
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999999998885233788899999988 8999999999999999873 1222222221 2223447999999
Q ss_pred CCEEEEEeC-CCcEEEEEcC-CCccccccc----CeEEEEECCCCCcccccccEEEEe
Q 004969 649 DHYLLGKGS-GTSMFVQSLR-GDPFRDFNM----SILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 649 g~~Lasgs~-Dg~I~VWDl~-g~~l~~~~~----~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
|.|+++|+. ...++||.-. |..++-.++ ....+.|||.. +++++-
T Consensus 261 geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r-------p~i~si 311 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR-------PIIASI 311 (405)
T ss_pred ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce-------eeeeec
Confidence 999998874 3478999977 555444332 46778999998 777765
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=2.4e-17 Score=175.25 Aligned_cols=226 Identities=15% Similarity=0.225 Sum_probs=181.2
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE-ee-------------c--CCCCCCeEEEEEeeCCCCEEEEE
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IP-------------S--FGAMNSVLGLCWLKKYPSKLIAG 517 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~-l~-------------~--~~H~~~V~sl~fsp~d~~~LaSg 517 (721)
..|.|++++| ++.+.++++.+|+|.-|++.+|+.... ++ . .+|...|.+++.+ +++.+|++|
T Consensus 143 ~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~Dgkylatg 220 (479)
T KOG0299|consen 143 LSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SDGKYLATG 220 (479)
T ss_pred CcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CCCcEEEec
Confidence 3699999999 899999999999999999988874411 11 1 2788899999998 899999999
Q ss_pred eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN 597 (721)
Q Consensus 518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~ 597 (721)
+.|..|.||+.++.+.. +. ...|.+.|.+++|-.....+++++.|++|++|++.....+.++.+ |++.|.
T Consensus 221 g~d~~v~Iw~~~t~ehv-~~--------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG-Hqd~v~ 290 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHV-KV--------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG-HQDGVL 290 (479)
T ss_pred CCCceEEEecCcccchh-hc--------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC-Ccccee
Confidence 99999999999996652 11 223557789999977778899999999999999999999999997 999999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc--
Q 004969 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD-- 673 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~-- 673 (721)
+|....-+ +.+.+|+.|+++++|++... . ...+.++.+.+ +++|- +...+++|+.+|.|.+|++. .+|+-.
T Consensus 291 ~IdaL~re-R~vtVGgrDrT~rlwKi~ee-s--qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGGRDRTVRLWKIPEE-S--QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eechhccc-ceEEeccccceeEEEecccc-c--eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence 99988776 67777889999999999653 2 23345666666 77776 45677889999999999986 333211
Q ss_pred --c-----------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 674 --F-----------NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 674 --~-----------~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
| ...|++++..|.+ .++|+|+..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~s-------dL~asGS~~ 401 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGS-------DLLASGSWS 401 (479)
T ss_pred ccccccCCccccccccceeeeEecccC-------ceEEecCCC
Confidence 1 1268888888888 999999954
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-17 Score=164.74 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=160.9
Q ss_pred CeEEEEE-eCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEY-HPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~laf-sP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
+|+.++| ||.-|.+||+++.||.|.||.-++|+-.+......|...|++|+|-|.+ +-.|++++.||.|.|.+++...
T Consensus 58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 5889998 5667899999999999999999988766555556899999999998654 4578899999999999998741
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecC---C-----------CEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCe
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM---D-----------ELFLASGYSKNIALYDINSGRR--LQVFADMHKEHI 596 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~-----------~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V 596 (721)
.- ....+.+.|.-.|++++|.|. | ..|++||.|..|+||+..+++- -+++.+ |.+.|
T Consensus 138 ~w------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-H~dwV 210 (299)
T KOG1332|consen 138 GW------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-HKDWV 210 (299)
T ss_pred Cc------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-cchhh
Confidence 10 122344556677999999886 3 4699999999999999987643 344666 99999
Q ss_pred EEEEEcCCC---CcEEEEEECCCcEEEEECCCCCce-eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 597 NVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 597 ~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+.++|.|.- ...+|+++.||++.||-.+..... ....+.....++ .++||+.|..|+.++.|+.+++|.-.
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999999974 358999999999999988742111 111122222334 89999999999999999999999755
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.7e-16 Score=153.73 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=156.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE----------------------------------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---------------------------------------------- 488 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~---------------------------------------------- 488 (721)
.|+|.+|+| +|.++++|+.|.+|++.-.+...+
T Consensus 91 siyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred cEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 599999999 999999999999999975432110
Q ss_pred ------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC
Q 004969 489 ------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562 (721)
Q Consensus 489 ------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~ 562 (721)
.+.+ .||.+.|.++- + -++-.+++|+.|.+|++||++-..+. ..+.... .-.-.....|.++++.|.|
T Consensus 170 c~~g~~~~a~--sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v-~~l~~~~-~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 170 CGRGQGFHAL--SGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCV-NTLDNDF-HDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred cCCCCcceee--cCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeecccee-eeccCcc-cCCCcccceeEEEEECCCc
Confidence 0111 26777777663 2 45778999999999999999875431 1110000 0000012468999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC--ceeEEEecCC-CC
Q 004969 563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP--IQPCYTASSS-KG 639 (721)
Q Consensus 563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~--~~~~~~~~~~-~~ 639 (721)
..+++|..|....+||++.++.++.|.. |...|.++.|+|.. .++++|+.|..|++-|+.... ..++.....| ..
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 9999999999999999999999999997 99999999999987 899999999999999997631 1233333334 44
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.+.+.|+|+.--+++.+.|.++.+|-+.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 5589999999999999999999999875
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.1e-17 Score=168.14 Aligned_cols=219 Identities=16% Similarity=0.225 Sum_probs=175.0
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEEC------CC------------------------------CeE--EEEeecC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNH------EN------------------------------ENI--VSYIPSF 495 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl------~t------------------------------g~~--i~~l~~~ 495 (721)
-.|.+|.|++ .+.++++|+.|++-.||.. .. |.. +......
T Consensus 191 GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 191 GSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred cceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence 3699999999 8999999999999999961 10 000 1112224
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir 575 (721)
+|...|.+..|. ..++.+++++.|.+-.+||++++.. +..+.+| ....+.++-||....+++++.|.+.+
T Consensus 270 gH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGH--------d~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 270 GHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEV-VNILTGH--------DSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred ccccceEehhhh-cCcceeeeeeccccceeeeeccCce-eccccCc--------chhccccccCCcceEEEEeccCceeE
Confidence 899999999998 7899999999999999999999765 3334433 34567888899999999999999999
Q ss_pred EEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 576 LYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 576 lWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
+||.+.. ..+..|+| |...|+++.|..+. .+++|+.|.+|++||+++.. .++.++........++.+..+..++.
T Consensus 340 LWDFReaI~sV~VFQG-HtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQG-HTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eccchhhcceeeeecc-cccceeEEEEecCC--ceeecCCCceEEEeeecccc-CcceeeecCCccceeEeecCCceEEe
Confidence 9999943 45678887 99999999999875 79999999999999999864 45666665556667888888889998
Q ss_pred EeCCCcEEEEEcCCCcc--------cccccCeEEEEECCCC
Q 004969 655 KGSGTSMFVQSLRGDPF--------RDFNMSILAAYTRPSS 687 (721)
Q Consensus 655 gs~Dg~I~VWDl~g~~l--------~~~~~~V~~v~fsP~~ 687 (721)
-..+..|++||+.|..+ ++|..-|.+++|...-
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 88888999999997653 3455678999996543
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.6e-17 Score=174.41 Aligned_cols=220 Identities=17% Similarity=0.300 Sum_probs=168.1
Q ss_pred CeEEEEEeCC------CCCEEEEEECCCeEEEEECCCCeE-------------------EEEeecCCCCCCeEEEEEeeC
Q 004969 455 RPRQFEYHPS------ISCLMVFGTLDGEIVVVNHENENI-------------------VSYIPSFGAMNSVLGLCWLKK 509 (721)
Q Consensus 455 ~V~~lafsP~------dg~~LasGs~DG~I~IWdl~tg~~-------------------i~~l~~~~H~~~V~sl~fsp~ 509 (721)
.|.|++|... .|+++|.|+.|..|.|||+.-... .+.....+|+.+|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 3567777542 478999999999999999752110 011112379999999999877
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-cEEE
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSG-RRLQ 586 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~-~~v~ 586 (721)
..+.|+|||.|.+|++||+.++++ ...+. |.++|.++.|+|... .+++|+.|++|.+.|.|.. ..-.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p----------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKP----------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCc----------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 778999999999999999999876 23333 557899999999765 5667778999999999942 2222
Q ss_pred EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEE
Q 004969 587 VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQ 664 (721)
Q Consensus 587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VW 664 (721)
.++ ..+.|-.++|+|..+..++++..||+++-+|+|+.. .+++++..|.+.+ ++++++.- ..+++++.|+.+++|
T Consensus 325 ~wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 325 EWK--FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eEE--eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 333 567899999999999999999999999999999864 6789999999988 79998855 467889999999999
Q ss_pred EcCCCc---ccccc--c-CeEEEEECCCC
Q 004969 665 SLRGDP---FRDFN--M-SILAAYTRPSS 687 (721)
Q Consensus 665 Dl~g~~---l~~~~--~-~V~~v~fsP~~ 687 (721)
++.+.. ...+. . ...+.++.|+.
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCc
Confidence 998432 23332 2 34455667766
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4e-17 Score=180.36 Aligned_cols=199 Identities=15% Similarity=0.249 Sum_probs=164.9
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+..+|-+++|.. ..+.+|+.||.|.++|+...+.... ...+|...|.+++|+ +++.++++|+.|+.+.|||....
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCc
Confidence 445799999986 8899999999999999987765544 234899999999999 89999999999999999999553
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.+ ......|...|.+++|+|-..- +++|| .|+.|++||..+++.+.... ....|.++.|++....+
T Consensus 334 ~p---------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 334 EP---------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKEL 402 (484)
T ss_pred cc---------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEE
Confidence 33 1233456678999999997654 55554 39999999999999999887 67899999999998444
Q ss_pred EEE-EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 609 FAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 609 LaS-gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+.+ |..++.|.||+..+. ..+..+.+|...| .++++|||..+++|+.|.++++|++-+
T Consensus 403 ~sthG~s~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEecCCCCCcEEEEecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 444 344778999999985 4467778898888 899999999999999999999999864
No 117
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=7.1e-17 Score=168.72 Aligned_cols=224 Identities=16% Similarity=0.260 Sum_probs=177.5
Q ss_pred CCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969 450 ENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (721)
Q Consensus 450 ~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt 522 (721)
..|...|..++|+|.+...||+|+.|.+|.||.+..+.. +..+. ||...|--|+|+|...+.|+|+|.|.+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~--gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY--GHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe--ecceeEEEEeecccchhhHhhccCCce
Confidence 345557899999999999999999999999999876543 34444 999999999999989999999999999
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-CeEEEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKF 601 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-~V~sI~f 601 (721)
|.+|++.++.. .+...|.+.|++++|+.+|..+++++.|+.|||||.++++.+..-.+ |.+ .-..+.|
T Consensus 156 v~iWnv~tgea----------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~-heG~k~~Raif 224 (472)
T KOG0303|consen 156 VSIWNVGTGEA----------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA-HEGAKPARAIF 224 (472)
T ss_pred EEEEeccCCce----------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc-ccCCCcceeEE
Confidence 99999999664 55667889999999999999999999999999999999999988865 654 3455668
Q ss_pred cCCCCcEEEEEE---CCCcEEEEECCCC-CceeEEEecCCCCeEEEEEecCCCEEE-EEeCCCcEEEEEcCCCc-----c
Q 004969 602 SNHSPSIFATSS---FDQDVKLWDLRQK-PIQPCYTASSSKGNVMVCFSPDDHYLL-GKGSGTSMFVQSLRGDP-----F 671 (721)
Q Consensus 602 sPdg~~lLaSgs---~DgtIrIWDlrs~-~~~~~~~~~~~~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~g~~-----l 671 (721)
..+| .++.||- .++.+-+||..+- +......+....+.+---|.+|...++ +|-.|+.|+-|.+...+ +
T Consensus 225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eccC-ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 8888 5555553 3778999998763 234456777777877778899888775 56679999999998544 2
Q ss_pred ccc--ccCeEEEEECCCC
Q 004969 672 RDF--NMSILAAYTRPSS 687 (721)
Q Consensus 672 ~~~--~~~V~~v~fsP~~ 687 (721)
..| ..+..++.|-|..
T Consensus 304 n~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cccccCCccccccccccc
Confidence 222 2245556666654
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.75 E-value=9e-17 Score=185.87 Aligned_cols=198 Identities=17% Similarity=0.288 Sum_probs=158.6
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------C--------eEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------E--------NIVSYIPSFGAMNSVLGLCWLKKYPSKLI 515 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g--------~~i~~l~~~~H~~~V~sl~fsp~d~~~La 515 (721)
..|.|+.|+| ||.+||+|++|+.|.||.... | +.+..+. +|.+.|..++|+ +++.+|+
T Consensus 70 ~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~--~H~~DV~Dv~Ws-p~~~~lv 145 (942)
T KOG0973|consen 70 GSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR--GHDSDVLDVNWS-PDDSLLV 145 (942)
T ss_pred CceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe--cCCCccceeccC-CCccEEE
Confidence 3699999999 999999999999999999762 1 1344444 899999999999 5899999
Q ss_pred EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE---------
Q 004969 516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ--------- 586 (721)
Q Consensus 516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~--------- 586 (721)
++|.|++|.||+..+... . .+.-.|...|-.+.|.|-|.+|++-++|++|++|...+....+
T Consensus 146 S~s~DnsViiwn~~tF~~-~--------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFEL-L--------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred EecccceEEEEcccccee-e--------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 999999999999999633 2 2334566778999999999999999999999999965421111
Q ss_pred -------------------------------------------EEccccCCCeEEEEEcCC--------C----Cc----
Q 004969 587 -------------------------------------------VFADMHKEHINVVKFSNH--------S----PS---- 607 (721)
Q Consensus 587 -------------------------------------------~l~~~h~~~V~sI~fsPd--------g----~~---- 607 (721)
.|.| |..++.++.|+|. | +.
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 2334 8999999999983 1 11
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.+|+|+.|++|-||..... .|++... ....++.++|+|||..|++++.||+|.+..+.
T Consensus 296 i~AvgSqDrSlSVW~T~~~--RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALP--RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EEEEecCCccEEEEecCCC--CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 7899999999999999665 4444332 23344589999999999999999999999886
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=4.4e-17 Score=179.68 Aligned_cols=208 Identities=18% Similarity=0.262 Sum_probs=175.3
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEcCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+-+++++.+| ++++||+|..-|+++||++..-+....+. +|...|.++.|+.+. ..+|++++.|.-|.|||+...
T Consensus 460 ~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 460 FGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceEEEEECC-CcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 3589999999 99999999999999999999877777776 899999999998432 468999999999999999865
Q ss_pred CCcccccccCccee---E--------------------------------e-c-----cCCCeEEEEEecCCCEEEEEeC
Q 004969 532 PPSIRGMHYGAGTV---T--------------------------------F-D-----EFDQLTSVHVNSMDELFLASGY 570 (721)
Q Consensus 532 ~~~~~~~~~~~~~~---~--------------------------------~-~-----~~~~V~sv~~sp~~~~lls~g~ 570 (721)
-..++.+.+|...+ . | . .+..++.+++.|...++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 44443333222111 0 0 0 2245889999999999999999
Q ss_pred CCcEEEEECCCCcEEEEEccc--cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec
Q 004969 571 SKNIALYDINSGRRLQVFADM--HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP 647 (721)
Q Consensus 571 Dg~IrlWDl~s~~~v~~l~~~--h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp 647 (721)
|..|+|||+.+|+.++.|++. |.+..-.+...|.| .++|+.+.|.++.++|.-++++ +....+|...+ .+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc--vA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC--VAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchh--hhhhcCcchheeeeeecc
Confidence 999999999999999999963 55677889999999 8999999999999999999977 56677888888 899999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 004969 648 DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 648 dg~~Lasgs~Dg~I~VWDl~ 667 (721)
|.+.|++.+.||.|.||.+.
T Consensus 694 DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchhheeecCCceEEEEECc
Confidence 99999999999999999975
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.3e-18 Score=190.77 Aligned_cols=187 Identities=19% Similarity=0.377 Sum_probs=161.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++.|++ ...+|++|+.+|+|++||++.++.++++. ||...+.+|.|+ +.+.+.++|+.|+.+++||++...+
T Consensus 72 pIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLt--gh~~~~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc- 146 (825)
T KOG0267|consen 72 PIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLT--GHLLNITSVDFH-PYGEFFASGSTDTDLKIWDIRKKGC- 146 (825)
T ss_pred cceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhh--ccccCcceeeec-cceEEeccccccccceehhhhccCc-
Confidence 589999999 88999999999999999999999999887 999999999999 6788999999999999999996443
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
...+. |...|..+.|+|+|.+++.++.|.+++|||+..|+....|.. |.+.+.++.|+|.. .++++|+
T Consensus 147 ---------~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-~e~~v~sle~hp~e-~Lla~Gs 215 (825)
T KOG0267|consen 147 ---------SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-HEGKVQSLEFHPLE-VLLAPGS 215 (825)
T ss_pred ---------eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-ccccccccccCchh-hhhccCC
Confidence 22232 445678899999999999999999999999999999999997 99999999999998 8999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSGT 659 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~Dg 659 (721)
.|+++++||+++... +-...... ++.+.+|+|+|..+++|....
T Consensus 216 ~d~tv~f~dletfe~--I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 216 SDRTVRFWDLETFEV--ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeeeccceeEE--eeccCCccCCceeeeecCCceeeecCchhh
Confidence 999999999997532 33333333 334899999999999886544
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.6e-16 Score=178.90 Aligned_cols=218 Identities=11% Similarity=0.164 Sum_probs=174.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++. +.+++++|+.+++|.+|....+..-..+. ...-++.+++|+ .+|+++|.||.|-.|++-+......
T Consensus 58 ~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~- 130 (933)
T KOG1274|consen 58 LVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQ- 130 (933)
T ss_pred eeEEEee---cccceEEeeccceEEEeeCCCCCccceee--eeeccceEEEEe-cCCcEEEeecCceeEEEEeccccch-
Confidence 3555555 44799999999999999998776443333 224679999998 8899999999999999999887543
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-------cCCCeEEEEEcCCCCc
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-------HKEHINVVKFSNHSPS 607 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-------h~~~V~sI~fsPdg~~ 607 (721)
..+...|..+|.++.++|.+..+++++.||.|++||+.++....++.+. -...+..++|+|+| .
T Consensus 131 --------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g 201 (933)
T KOG1274|consen 131 --------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-G 201 (933)
T ss_pred --------heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-C
Confidence 2344567789999999999999999999999999999998877766531 13456789999998 4
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 686 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~ 686 (721)
.++..+.|+.|++|+..+...........+.. ...+.|+|+|.|||+++.+|.|.|||+..+..+.+...|.+.+|.|+
T Consensus 202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 77778889999999999885544443333333 44899999999999999999999999996555555678999999999
Q ss_pred CC
Q 004969 687 SK 688 (721)
Q Consensus 687 ~~ 688 (721)
..
T Consensus 282 ~n 283 (933)
T KOG1274|consen 282 AN 283 (933)
T ss_pred CC
Confidence 73
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.4e-15 Score=159.73 Aligned_cols=222 Identities=12% Similarity=0.123 Sum_probs=157.6
Q ss_pred eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGtVrIWDi~~~~~ 533 (721)
+.+++|+| ++..+ ++++.++.|++||..+++....+. .+. .+..++|+ ++++.++ +++.|+.|++||+.+.+.
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALH-PNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 56799999 77765 677889999999999988877665 332 35678888 5666554 556789999999987432
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
...+.....+.+++|+|++..+++++.++ .+.+||.++++.+.... ....+..++|+|++..+++++
T Consensus 108 ----------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 108 ----------LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred ----------EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEc
Confidence 12222233467899999999999888764 57788999888776554 334567899999994344566
Q ss_pred ECCCcEEEEECCCCCceeEEEecC------CCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCCcc-c--ccccCeEEEE
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASS------SKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGDPF-R--DFNMSILAAY 682 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~------~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~~l-~--~~~~~V~~v~ 682 (721)
..++.|++||+++++......... ...+..++|+|+|++++++ +.++.+.+||++.... . .+...+.+++
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 255 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLA 255 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEE
Confidence 679999999999876543333221 1122368899999986554 5567899999974332 2 2245788999
Q ss_pred ECCCCCcccccccEEEEec
Q 004969 683 TRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs 701 (721)
|+|++ ..|++++
T Consensus 256 ~~~~g-------~~l~~~~ 267 (300)
T TIGR03866 256 FTPDE-------KYLLTTN 267 (300)
T ss_pred ECCCC-------CEEEEEc
Confidence 99999 6666553
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.1e-16 Score=159.20 Aligned_cols=238 Identities=13% Similarity=0.148 Sum_probs=171.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+. ||+.||+.+.|++|+||++..-.. -+.++..-.-+..+.+.|.|.....++++-...++++|.+...+
T Consensus 88 ~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 599999999 999999999999999999875221 01111101112467889987666777777777899999886533
Q ss_pred C---cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 533 P---SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 ~---~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
. .........-...-.|...+..+-....+.++++++.|..|.+||++ |+.+..+.. ....-+..+.+|+| +++
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~G-RFi 243 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDG-RFI 243 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCC-cEE
Confidence 2 11000000000111233456667776677888899999999999999 998888875 55666778899999 899
Q ss_pred EEEECCCcEEEEECC---CC---CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC------Cc--cccc
Q 004969 610 ATSSFDQDVKLWDLR---QK---PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG------DP--FRDF 674 (721)
Q Consensus 610 aSgs~DgtIrIWDlr---s~---~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g------~~--l~~~ 674 (721)
++++.-..|++|.+- .+ +...++.+.+|...+ .++||++.+.+++.+.||+++|||+.- +| ++..
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g 323 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG 323 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence 999999999999873 22 234467889999888 899999999999999999999999751 11 2222
Q ss_pred -------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 675 -------NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 675 -------~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
......++.+|.+ .+||.+.+.
T Consensus 324 ~~pl~aag~~p~RL~lsP~g-------~~lA~s~gs 352 (420)
T KOG2096|consen 324 SAPLHAAGSEPVRLELSPSG-------DSLAVSFGS 352 (420)
T ss_pred CcchhhcCCCceEEEeCCCC-------cEEEeecCC
Confidence 3355689999999 677666665
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-15 Score=155.87 Aligned_cols=240 Identities=11% Similarity=0.131 Sum_probs=174.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
-|.++.|.+ .|+++|+++.|++|+|||..+ |.-..+-....|.++|..|.|.++ -|+.+++++.|+++.||.-...
T Consensus 15 lihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 388999999 999999999999999999653 333333333489999999999644 4789999999999999987432
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC------cEEEEEc------cccCCCeE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSG------RRLQVFA------DMHKEHIN 597 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~------~~v~~l~------~~h~~~V~ 597 (721)
.....+..-............|+++.|.|. |-.+++++.||.+|||+.-.- .....++ +.+..+..
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 221111111111122234567999999886 567888889999999987643 2222332 23667888
Q ss_pred EEEEcCCC--CcEEEEEECC-----CcEEEEECCCC--CceeEEEecCCCCeE-EEEEecC----CCEEEEEeCCCcEEE
Q 004969 598 VVKFSNHS--PSIFATSSFD-----QDVKLWDLRQK--PIQPCYTASSSKGNV-MVCFSPD----DHYLLGKGSGTSMFV 663 (721)
Q Consensus 598 sI~fsPdg--~~lLaSgs~D-----gtIrIWDlrs~--~~~~~~~~~~~~~~v-sl~fSpd----g~~Lasgs~Dg~I~V 663 (721)
|+.|+|.. +.+||+|+.+ +.++||..... +...+.++.++..++ .++|.|+ -..||+++.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 99999753 3478888876 47888876543 455667788888888 8999994 35789999999 999
Q ss_pred EEcCCC------------------------cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 664 QSLRGD------------------------PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 664 WDl~g~------------------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|.++.. .+..|++.|..+.|+-.| .+|+|.|..
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-------tiLsStGdD 309 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-------TILSSTGDD 309 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-------eEEeecCCC
Confidence 998731 134567788888898888 788887766
No 125
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=175.47 Aligned_cols=222 Identities=17% Similarity=0.232 Sum_probs=182.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|..+.|-+ +...|++|+.|..|++|++..++ .+.++. |..++|+++.|- .++..+++++.|+.+++|++...+
T Consensus 177 ev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 177 EVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccceeEEcc-Ccchhhhcchhhhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceEEeecCCCceeeeeccchh
Confidence 367899999 77899999999999999998766 445554 667899999997 778899999999999999999865
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. ...+. .|.+.|+++.|......+++|+.|.+|++||+....+.++.. ..+.+..|..++ ..+++|
T Consensus 253 ~-~~TLs--------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~---~~~~Sg 318 (459)
T KOG0288|consen 253 L-RHTLS--------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI---SDVISG 318 (459)
T ss_pred h-hhhhc--------ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc---eeeeec
Confidence 4 12222 256788999997666668899999999999999998888876 566777787763 579999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--------ccCeEEEEEC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--------NMSILAAYTR 684 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--------~~~V~~v~fs 684 (721)
..|+.||+||.++..+ +...+.+....++..+++|..|.+.+.|.++.+.|+++..++.. ......+.||
T Consensus 319 H~DkkvRfwD~Rs~~~--~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADK--TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ccccceEEEeccCCce--eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 9999999999999854 56666666666999999999999999999999999996554321 2357889999
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
|++ .++|+||..
T Consensus 397 pd~-------~YvaAGS~d 408 (459)
T KOG0288|consen 397 PDG-------SYVAAGSAD 408 (459)
T ss_pred CCC-------ceeeeccCC
Confidence 999 888888876
No 126
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1e-16 Score=163.88 Aligned_cols=224 Identities=15% Similarity=0.288 Sum_probs=174.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC---eEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CCC-cccccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS---VLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-MPP-SIRGMH 539 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~---V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~~~-~~~~~~ 539 (721)
+..++++.+.+.-|++||.-+|+....+....|... ..+++|+ +++.+|++| ...+|+++|+.. +.. .+....
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 678999999999999999999999988887777654 4589998 789998875 556999999943 332 111100
Q ss_pred cCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCc
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQD 617 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dgt 617 (721)
. ...+...+-|.+++++|... .++.++...++-||.-..+.++..+-+ |.+.|+.++|.++| +.|.+|+ .|..
T Consensus 200 ~---~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~gGvThL~~~edG-n~lfsGaRk~dk 274 (406)
T KOG2919|consen 200 T---KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HGGGVTHLQWCEDG-NKLFSGARKDDK 274 (406)
T ss_pred h---cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cCCCeeeEEeccCc-CeecccccCCCe
Confidence 0 11223345588999999887 566667788888998888889988886 99999999999999 5666665 4788
Q ss_pred EEEEECCCCCceeEEEecCCCCe----EEEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCC
Q 004969 618 VKLWDLRQKPIQPCYTASSSKGN----VMVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 618 IrIWDlrs~~~~~~~~~~~~~~~----vsl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~ 688 (721)
|-.||+|... .+++.+..|.+. +-....|+|++|++|+.||.|++||++ |.+ +..+...++.++++|--
T Consensus 275 Il~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m- 352 (406)
T KOG2919|consen 275 ILCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM- 352 (406)
T ss_pred EEEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-
Confidence 9999999853 556677666653 245557899999999999999999998 343 33446789999999998
Q ss_pred cccccccEEEEecCC
Q 004969 689 SEIVKVNLLASTDHC 703 (721)
Q Consensus 689 ~~~v~v~lLASgs~~ 703 (721)
|++|++++.
T Consensus 353 ------pilatssGq 361 (406)
T KOG2919|consen 353 ------PILATSSGQ 361 (406)
T ss_pred ------ceeeeccCc
Confidence 999999987
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=1.8e-16 Score=173.99 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=169.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|..++|-| ....|++++.|.++++||+++++++..--..||.+.|.+++|.|.+...|++|+.||.|.|||++-....
T Consensus 102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD 180 (720)
T ss_pred eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence 588999999 8899999999999999999998887763334999999999999999999999999999999999854310
Q ss_pred ---------cccccc---Ccce-----eE-eccCC----CeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEcc-
Q 004969 535 ---------IRGMHY---GAGT-----VT-FDEFD----QLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD- 590 (721)
Q Consensus 535 ---------~~~~~~---~~~~-----~~-~~~~~----~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~- 590 (721)
.....+ +... .. ..+.. .|+.+.| .+...++++|. |+.|++||++..........
T Consensus 181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~ 259 (720)
T KOG0321|consen 181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPR 259 (720)
T ss_pred hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCC
Confidence 000011 0000 00 01112 2445555 78889999887 99999999997544332210
Q ss_pred ------cc---CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe---EEEEEecCCCEEEEEeCC
Q 004969 591 ------MH---KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN---VMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 591 ------~h---~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~---vsl~fSpdg~~Lasgs~D 658 (721)
.| ...+.++.....|.+++|+|. |+.|++|++++....++..+.++... +.-..+||+.++++|+.|
T Consensus 260 ~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 260 GSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred cccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 12 345677777777855555555 99999999998766666665554332 245678999999999999
Q ss_pred CcEEEEEcCCC-----cccccccCeEEEEECCCC
Q 004969 659 TSMFVQSLRGD-----PFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 659 g~I~VWDl~g~-----~l~~~~~~V~~v~fsP~~ 687 (721)
...++|.+..- .+.+|...|.++.|.|..
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999998721 256778899999998865
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=5.1e-17 Score=173.53 Aligned_cols=227 Identities=11% Similarity=0.155 Sum_probs=186.4
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
...+++++...| |++.|++|+.-.++.|||+......-........-...+++.+ ++.++.+++..||.|.|||+...
T Consensus 464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred cccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccc
Confidence 344799999999 9999999999999999999865543333322334567888887 78999999999999999999874
Q ss_pred CCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.. +..| .|.+.+.|+.++++|..+-+||-|.+||.||+++++.+.... ..+.|.++.+.|.+ .+++
T Consensus 542 ~~----------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~-dWla 608 (705)
T KOG0639|consen 542 TL----------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTG-DWLA 608 (705)
T ss_pred ee----------eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCc-ccee
Confidence 32 2233 245678999999999999999999999999999998877665 67899999999999 7999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPS 686 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~ 686 (721)
+|-..+.+.|-...... .+.+.-|...+ ++.|.+.|+|+++.+.|+.+..|... |..+-.. ..+|.+...+-+
T Consensus 609 vGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFD 685 (705)
T ss_pred eecccCcEEEEecCCcc---ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccC
Confidence 99999998888776542 45566677777 99999999999999999999999987 5443222 458999999988
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
. .+|+|||+.
T Consensus 686 d-------kyIVTGSGd 695 (705)
T KOG0639|consen 686 D-------KYIVTGSGD 695 (705)
T ss_pred c-------eEEEecCCC
Confidence 8 999999998
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=2.1e-17 Score=171.03 Aligned_cols=193 Identities=19% Similarity=0.281 Sum_probs=153.6
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
.|.-+. .++.++|++. .|.|||.+...++..+.. ....|.++.|+|.....|++|+.|+.|.+||+++..+....
T Consensus 152 gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV 226 (433)
T KOG0268|consen 152 GIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSW--GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV 226 (433)
T ss_pred cccccc-ccccccccCc--eeeecccccCCccceeec--CCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence 344444 4556666654 377888777777777763 34679999999888889999999999999999997763211
Q ss_pred cccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
. ....-+.++|+|..-.|+++..|..++.||++. .+++..+.+ |.+.|..+.|+|.| .-|++||.|.
T Consensus 227 i----------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG-~EfvsgsyDk 294 (433)
T KOG0268|consen 227 I----------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTG-QEFVSGSYDK 294 (433)
T ss_pred e----------eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-cceeEEEeccCCCc-chhccccccc
Confidence 1 112347899999888888888999999999996 457777777 99999999999999 7999999999
Q ss_pred cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+||||..+.+...-++....-...+++.||.|.+|+++||.|+.|++|.-.
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999998766555544434445599999999999999999999999865
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=173.08 Aligned_cols=224 Identities=15% Similarity=0.195 Sum_probs=177.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-+.|+|.| +|.+|++++.||.|++|+.... ....++. .+...|.+++. ..++|++|+.+++|.+|.+..+...
T Consensus 16 ~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 16 LTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred eEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee---cccceEEeeccceEEEeeCCCCCcc
Confidence 46799999 9999999999999999997655 3333332 25677888874 5679999999999999999987651
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.+.....-++.+++++-+|.++++||+|-.|++.++........+.+ |.++|.++.|+|.+ +++|+.+.
T Consensus 90 ---------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~-~fLAvss~ 158 (933)
T KOG1274|consen 90 ---------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKG-NFLAVSSC 158 (933)
T ss_pred ---------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCC-CEEEEEec
Confidence 11222335789999999999999999999999999999999999997 99999999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEe-----cCC-CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----c--cccccCeEEE
Q 004969 615 DQDVKLWDLRQKPIQPCYTA-----SSS-KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----F--RDFNMSILAA 681 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~-----~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l--~~~~~~V~~v 681 (721)
||.|++||+.++.+...... ... ..+. .++|+|+|..++..+.|+.|++|+..+-. + +.+...+..+
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 99999999998754322211 011 2222 69999998888888899999999887432 1 1223458889
Q ss_pred EECCCCCcccccccEEEEecCC
Q 004969 682 YTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|+|.| ..||+++..
T Consensus 239 ~wsPnG-------~YiAAs~~~ 253 (933)
T KOG1274|consen 239 QWSPNG-------KYIAASTLD 253 (933)
T ss_pred EEcCCC-------cEEeeeccC
Confidence 999999 888888776
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.5e-16 Score=169.64 Aligned_cols=247 Identities=13% Similarity=0.159 Sum_probs=186.1
Q ss_pred CCceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE
Q 004969 434 WPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK 513 (721)
Q Consensus 434 ~p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~ 513 (721)
.|....+...||.. .|+||..+| .|.+|++|+.||+|+||.+.+|.++.+++.. +.|.+|+|+|....-
T Consensus 388 FPt~~~lvyrGHtg-------~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 388 FPTRCALVYRGHTG-------LVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLC 456 (733)
T ss_pred CcceeeeeEeccCC-------eEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCce
Confidence 34444444455655 599999999 9999999999999999999999999998753 579999999755555
Q ss_pred EEEEeCCCeEEEEEcCCCCCc--------cccc-------------c-------cCcceeEeccCCCeEEEEEecCCCEE
Q 004969 514 LIAGSDNGSLKLYDIRHMPPS--------IRGM-------------H-------YGAGTVTFDEFDQLTSVHVNSMDELF 565 (721)
Q Consensus 514 LaSgs~DGtVrIWDi~~~~~~--------~~~~-------------~-------~~~~~~~~~~~~~V~sv~~sp~~~~l 565 (721)
++++...+.+.|-+..-+... +... . ...-.+...|...|..+.||..|++|
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 555555556666665433110 0000 0 00113456688899999999999999
Q ss_pred EEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-
Q 004969 566 LASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV- 641 (721)
Q Consensus 566 ls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v- 641 (721)
++... ...|.|+++...+...-|.. ..+.|.++.|+|..+ +|++++ -..|||||+..... +..+.....++
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqel--vKkL~tg~kwiS 611 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQEL--VKKLLTGSKWIS 611 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHH--HHHHhcCCeeee
Confidence 99865 35699999987776666654 667899999999985 555555 36799999987533 33444455566
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 642 MVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 642 sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+++.+|.|.-|+.|+.|+.+..+|+. .++ ++.|...+..++||+.. |++|||+-.
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-------PLfas~sdD 671 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-------PLFASGSDD 671 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-------ceeeeecCC
Confidence 79999999999999999999999987 334 56678899999999999 999999985
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.71 E-value=2.1e-16 Score=169.67 Aligned_cols=199 Identities=15% Similarity=0.164 Sum_probs=152.0
Q ss_pred ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969 493 PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK 572 (721)
Q Consensus 493 ~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg 572 (721)
+..+|...|.++++- +.|..|+|||.|-+|++||+........... .+......+|.++.|++.++.|++.+...
T Consensus 162 ~l~hgtk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr----~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFR----QLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhh----ccCcccccccceeeecCCCCeEEEEecCc
Confidence 334888999999997 7889999999999999999998654332211 11112234689999999999999999999
Q ss_pred cEEEEECCCCcEEEEEc-----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCC---
Q 004969 573 NIALYDINSGRRLQVFA-----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSS--- 637 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~-----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~--- 637 (721)
..+|+|..-.+.+...+ .+|...+++.+|+|.....|+|++.||++||||+...+. ..++.....
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 99999976433332221 148999999999999988999999999999999987532 223332221
Q ss_pred C-CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc-------ccc--cCeEEEEECCCCCcccccccEEEEecCC
Q 004969 638 K-GNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR-------DFN--MSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 638 ~-~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~-------~~~--~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. .+.+++|+|||.+||+|..||+|.+|+.++...+ .|. ..|.++.|+++| ++|+|-|..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-------~~LlSRg~D 385 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-------NYLLSRGFD 385 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-------chhhhccCC
Confidence 1 1228999999999999999999999998644322 233 389999999999 999998876
No 133
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=4.2e-16 Score=157.37 Aligned_cols=227 Identities=15% Similarity=0.220 Sum_probs=175.5
Q ss_pred CeEEEEEeCCCCCEEEEEECC-------CeEEEEECCCCe---------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPSISCLMVFGTLD-------GEIVVVNHENEN---------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D-------G~I~IWdl~tg~---------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs 518 (721)
.|+.++-+|.+..+|++...+ -.+.||.+.... ++..+.. .+.+.|.++.|. |++..+++-.
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~-Pns~klasm~ 142 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWE-PNSDKLASMD 142 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEc-CCCCeeEEec
Confidence 388999999888888887652 246799986421 2333332 445689999999 5788888765
Q ss_pred CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN 597 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~ 597 (721)
|..|.+|++......+..+.... ...+....++-+|+| .+...+++..|++++.||+|+.+....+..+|...|.
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred -cCceEEEEcccCcchheeecccc---cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceee
Confidence 78999999998766444333221 112344578889998 4555666677899999999999988888888999999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCC-------
Q 004969 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRG------- 668 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g------- 668 (721)
.+.|+|+...+++||+.||.|||||+|..+ .+++.+++|..++ ++.|+| ..+.+++|+.|..|.+|....
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 999999998899999999999999999854 6789999999999 999999 457778999999999986420
Q ss_pred ------------------C--------cccccccCeEEEEECCCCC
Q 004969 669 ------------------D--------PFRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 669 ------------------~--------~l~~~~~~V~~v~fsP~~~ 688 (721)
+ .+..|+.+|.+++|+...+
T Consensus 298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 0 1334567999999998875
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2e-15 Score=154.34 Aligned_cols=212 Identities=14% Similarity=0.241 Sum_probs=158.3
Q ss_pred EEEEECCCeEEEEECCC----------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969 469 MVFGTLDGEIVVVNHEN----------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (721)
Q Consensus 469 LasGs~DG~I~IWdl~t----------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~ 538 (721)
|++|++...|.=+++.- ......+...+|.++|++++.+ +.+++|||.|-+|+|||+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql---- 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL---- 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh----
Confidence 55666666555554421 1223344446899999999974 889999999999999999986542
Q ss_pred ccCcceeEeccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
.....|.+.|+++.|.++-. .+++|+.||.|.+|+......+..+++ |.+.|+.++.+|.| .+.++.+.|+
T Consensus 77 -----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~-KLALsVg~D~ 149 (362)
T KOG0294|consen 77 -----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSG-KLALSVGGDQ 149 (362)
T ss_pred -----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCC-ceEEEEcCCc
Confidence 12334567789999987765 899999999999999999999999997 99999999999999 7999999999
Q ss_pred cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE---------------------------------------EEeC
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL---------------------------------------GKGS 657 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La---------------------------------------sgs~ 657 (721)
.+++||+-.++...+..+. .....+.|+|.|.+++ +|+.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred eeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC
Confidence 9999999887543333332 2222466666666444 7888
Q ss_pred CCcEEEEEcC-CCc---ccccccCeEEEE--ECCCCCcccccccEEEEecCC
Q 004969 658 GTSMFVQSLR-GDP---FRDFNMSILAAY--TRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 658 Dg~I~VWDl~-g~~---l~~~~~~V~~v~--fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+.|.+||.. +.+ +..|...|-.+. -.|.+ .+|+|+|..
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-------~~lvTaSSD 272 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-------EYLVTASSD 272 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEecCCc-------eEEEEeccC
Confidence 8888899877 333 445566676665 35666 788888776
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.71 E-value=3.5e-15 Score=160.00 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=176.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.|+.|.+ +++ +++|..+|.|.||+..+.+..+... .|.+.|.+++.. .+ ..|+||+.|..|..||-.-.+..
T Consensus 248 ~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~l-r~-GtllSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 248 FVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCML-RD-GTLLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred EEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEe-cC-ccEeecCccceEEeccccccccc
Confidence 599999999 766 7899999999999997766666655 899999999986 44 45667999999999994322110
Q ss_pred cccc-------------------------------ccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969 535 IRGM-------------------------------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR 583 (721)
Q Consensus 535 ~~~~-------------------------------~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~ 583 (721)
...+ ...-....+.|.+....++.+|+.+.++++|.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 0000 1111223445667899999999999999999999999999 566
Q ss_pred EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969 584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663 (721)
Q Consensus 584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~V 663 (721)
++.+.. ...++.++.|+|.| .+|.|...|..-+.|..+.....+.+ .......++|+|+|.+||.|+.|+.|++
T Consensus 400 ~~wt~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 400 LEWTKI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred eeEEEE--ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 766665 56789999999998 89999999999999999864433332 2333448999999999999999999999
Q ss_pred EEcC--CCccc----ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 664 QSLR--GDPFR----DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 664 WDl~--g~~l~----~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|-+. |..+. .+..++..+.|++++ +.+.+-++.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-------~~~~~~S~d 512 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDS-------QFLVSNSGD 512 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCC-------ceEEeccCc
Confidence 9987 43322 224689999999999 777766665
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=6e-16 Score=157.29 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=146.4
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir 575 (721)
...+.|.+++|+|....+++++|.||+||+|+++.... ..+.....+.++|.+++|+.+|..+++|+.|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-------~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc-------ccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 34578999999987778888999999999999987422 11233445778999999999999999999999999
Q ss_pred EEECCCCcEEEEEccccCCCeEEEEEcCCCC-cEEEEEECCCcEEEEECCCCCceeEEEec-------------------
Q 004969 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSP-SIFATSSFDQDVKLWDLRQKPIQPCYTAS------------------- 635 (721)
Q Consensus 576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~-~lLaSgs~DgtIrIWDlrs~~~~~~~~~~------------------- 635 (721)
+||+.+++..+.- +|.++|.++.|-+... ..|+|||.|.+||.||+|.........++
T Consensus 98 ~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 98 LWDLASGQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAE 175 (347)
T ss_pred EEEccCCCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecC
Confidence 9999999655443 3999999999987551 38999999999999999975432211111
Q ss_pred ---------CC-------CC----eE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C-----cccccc---------cCeE
Q 004969 636 ---------SS-------KG----NV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D-----PFRDFN---------MSIL 679 (721)
Q Consensus 636 ---------~~-------~~----~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~-----~l~~~~---------~~V~ 679 (721)
+. .. -+ +++..+|..-.+.|+..|.+.|..+.. . +++.|. -.|+
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 10 00 02 567777777778899999999988873 2 245553 1577
Q ss_pred EEEECCCCCcccccccEEEEecCC
Q 004969 680 AAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 680 ~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.++|||.. ..|+|.|..
T Consensus 256 si~FhP~h-------gtlvTaGsD 272 (347)
T KOG0647|consen 256 SIAFHPVH-------GTLVTAGSD 272 (347)
T ss_pred ceEeeccc-------ceEEEecCC
Confidence 89999988 889998886
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.8e-17 Score=188.75 Aligned_cols=222 Identities=18% Similarity=0.288 Sum_probs=170.8
Q ss_pred CeEEEEEeCCCCC----EEEEEECCCeEEEEECCC---Ce---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISC----LMVFGTLDGEIVVVNHEN---EN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~----~LasGs~DG~I~IWdl~t---g~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
+-..++|.+ .+. +||.|..||.|.+||... +. .+.+. ..|.+.|.++.|++..+++|++|+.||.|.
T Consensus 66 rF~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 66 RFNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEE
Confidence 456789988 333 599999999999999864 22 22333 379999999999988888999999999999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccC--CCeEEEEE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHK--EHINVVKF 601 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~--~~V~sI~f 601 (721)
|||+...+.....- .....+.|.+++|+..-.++++++ .+|.+.|||++..+++..+.. +. ..+..++|
T Consensus 143 iWDlnn~~tP~~~~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAW 214 (1049)
T ss_pred EeccCCcCCCCCCC-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeee
Confidence 99999844321110 122346799999998877766555 578999999999988888875 43 35789999
Q ss_pred cCCCCcEEEEEECCC---cEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCC-Cccccc-
Q 004969 602 SNHSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRG-DPFRDF- 674 (721)
Q Consensus 602 sPdg~~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g-~~l~~~- 674 (721)
+|++...+++++.|. .|.+||+|.- ..++..+.+|...+ ++.|++.+ +++++++.|+.|.+|+.+. ..+-.+
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 999988888888764 5999999974 24555666666555 99999966 8999999999999999883 333333
Q ss_pred --ccCeEEEEECCCCC
Q 004969 675 --NMSILAAYTRPSSK 688 (721)
Q Consensus 675 --~~~V~~v~fsP~~~ 688 (721)
...+..+.|.|...
T Consensus 294 ~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNP 309 (1049)
T ss_pred CCCcceeeeeecCCCc
Confidence 45788899999874
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.9e-15 Score=161.56 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=172.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|+++||+. ..+.+|.|-.||.|-||++..+-.. ..+.. +....|-+++|+ ++..|.|.+.+|.|.-||+.+.++
T Consensus 27 ~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 27 EIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 589999999 7778999999999999999876543 34442 345789999997 678899999999999999999665
Q ss_pred cccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-cccCCCeEEEEEcCCCCcEEEE
Q 004969 534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-~~h~~~V~sI~fsPdg~~lLaS 611 (721)
. .... ..+.|++++.+|.+..++.|++||.+..++...++...... ...++.|.+++|+|++ ..+++
T Consensus 103 ~----------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~ 171 (691)
T KOG2048|consen 103 K----------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAG 171 (691)
T ss_pred e----------EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEe
Confidence 2 2222 23569999999999999999999988888888777654322 1245899999999999 78999
Q ss_pred EECCCcEEEEECCCCCceeEEEe-----cC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEE
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTA-----SS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILA 680 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~-----~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~ 680 (721)
|+.||.|++||..++....+.+. .. ....+ ++.|- ....|++|...|+|.+||-. |. .++.|...|.+
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 99999999999998754432221 11 11122 56665 44578889999999999987 33 34556789999
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++..+++ +.+.+++..
T Consensus 251 Lav~~~~-------d~vfsaGvd 266 (691)
T KOG2048|consen 251 LAVADNE-------DRVFSAGVD 266 (691)
T ss_pred EEEcCCC-------CeEEEccCC
Confidence 9999998 555555544
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=4.7e-15 Score=167.01 Aligned_cols=239 Identities=16% Similarity=0.275 Sum_probs=183.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|++++|.-+...++|+|+..|.+.+||++..+.+..+.. .|.+.|....|. +....+++++.|..+++|=.+++...
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCc
Confidence 6999999985556788888889999999998777766653 788899999998 67789999999999998855521100
Q ss_pred -----------------------------------c---------------c--------cc------------------
Q 004969 535 -----------------------------------I---------------R--------GM------------------ 538 (721)
Q Consensus 535 -----------------------------------~---------------~--------~~------------------ 538 (721)
. + ..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 0 0 00
Q ss_pred ---------------cc------------CcceeEeccC------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 004969 539 ---------------HY------------GAGTVTFDEF------DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL 585 (721)
Q Consensus 539 ---------------~~------------~~~~~~~~~~------~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v 585 (721)
.+ ..+...+.+. ..+++++.++.|+..+.|.+.|+|-+|++.+|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 00 0001111122 35889999999999999999999999999999988
Q ss_pred EEEc--cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce----------------------------------
Q 004969 586 QVFA--DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ---------------------------------- 629 (721)
Q Consensus 586 ~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~---------------------------------- 629 (721)
..|. .+|.++|++++...-+ +.+++++.+|.+++||..+....
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 8883 3599999999998777 79999999999999998764310
Q ss_pred -----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCCCCcccccccEEEEe
Q 004969 630 -----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 630 -----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
.+..+.+|...+ .++|||||+||++++.|++|++||+. +..+-.+ ..+...+.|+|++ .+||+.
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng-------D~LAT~ 635 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG-------DFLATV 635 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC-------CEEEEE
Confidence 011233566666 89999999999999999999999998 4444333 5688899999999 888888
Q ss_pred cCC
Q 004969 701 DHC 703 (721)
Q Consensus 701 s~~ 703 (721)
...
T Consensus 636 Hvd 638 (910)
T KOG1539|consen 636 HVD 638 (910)
T ss_pred Eec
Confidence 765
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=1.8e-14 Score=151.36 Aligned_cols=203 Identities=13% Similarity=0.111 Sum_probs=147.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
.++++++.||.|++||+.+++.+..+. .+ ..+.+++|+ +++..+ ++++.++.|++||..+++.. .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~----------~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVI----------G 67 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEE----------E
Confidence 578899999999999999999888876 33 346789998 566655 67788999999999876431 1
Q ss_pred EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC-cEEEEEC
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDL 623 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDl 623 (721)
.+.....+..++++|+++.+++++ .++.+++||+++++.+..+. +...+.+++|+|+| .++++++.++ .+.+||.
T Consensus 68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDT 144 (300)
T ss_pred eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCC-CEEEEEecCCCeEEEEeC
Confidence 111222346788999998887665 58999999999988887776 34457889999999 6787777765 5778899
Q ss_pred CCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCCc-ccccc----------cCeEEEEECCCCC
Q 004969 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGDP-FRDFN----------MSILAAYTRPSSK 688 (721)
Q Consensus 624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~~-l~~~~----------~~V~~v~fsP~~~ 688 (721)
+++..... ......+..++|+|+|++++++ ..++.|++||++... .+.+. .....+.|+|+++
T Consensus 145 ~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 145 KTYEIVDN--VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred CCCeEEEE--EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 87644322 2223344578999999988655 468999999998432 22211 1234578899984
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.1e-15 Score=150.30 Aligned_cols=181 Identities=22% Similarity=0.306 Sum_probs=145.1
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcE
Q 004969 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNI 574 (721)
Q Consensus 497 H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~I 574 (721)
..+.|+++.|+ .+|..+++++.|.++++||...++..-. ...++..+..++|......++.++. |.+|
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~t---------i~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKT---------INSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeE---------eecccccccEEEEecCCceEEEccCCCCCce
Confidence 35789999998 8999999999999999999998765211 1112234566666666666666664 8999
Q ss_pred EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
|..++.+.+.++.|.| |...|++++.+|-+ ..+++++.|++||+||+|..+++-.....+ ...++|+|+|-++|+
T Consensus 83 ryLsl~dNkylRYF~G-H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPG-HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFAL 157 (311)
T ss_pred EEEEeecCceEEEcCC-CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcEEEE
Confidence 9999999999999998 99999999999998 799999999999999999887765544332 224799999999999
Q ss_pred EeCCCcEEEEEcC---CCccccc------ccCeEEEEECCCCCcccc
Q 004969 655 KGSGTSMFVQSLR---GDPFRDF------NMSILAAYTRPSSKSEIV 692 (721)
Q Consensus 655 gs~Dg~I~VWDl~---g~~l~~~------~~~V~~v~fsP~~~~~~v 692 (721)
+...+.|++||+| +.|+..+ ......+.|+|+|++-.+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 9988899999998 4566655 235778999999975444
No 142
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.1e-15 Score=155.80 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=128.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECC------CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE------NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~------tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
|.++.|+. ++.+||+|+.|..+++|+++ +.+++... .+.|...|.+++|. ..+.++++|+.+|+|...|++
T Consensus 59 iNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFD-LENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEc-cCCeeEecCCCcceeEeeecc
Confidence 88999999 89999999999999999985 33444433 34677899999997 778899999999999999999
Q ss_pred CCCCcccccccCcceeEeccC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEc-cccCCCeEEEEEcCC
Q 004969 530 HMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA-DMHKEHINVVKFSNH 604 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~-~~h~~~V~sI~fsPd 604 (721)
+.+. ...+.+. +.|+.+..+|.++.+++.+.+|.|.+||.+... ++.-+. ........++.|+|.
T Consensus 136 t~qs----------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 136 TKQS----------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ccee----------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 8543 3334444 379999999999999999999999999999654 222221 125667889999999
Q ss_pred CCcEEEEEECCCcEEEEECCCC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~ 626 (721)
.|.++++.+..+-+-+||.|..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CceeEEeccccCCCCceeeccc
Confidence 9999999999999999999863
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.67 E-value=2.6e-15 Score=166.33 Aligned_cols=219 Identities=16% Similarity=0.253 Sum_probs=171.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEE-EEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~s-l~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
|+.+++.+ +..+++|+.||++++|+-..++...+....+|.+.|.. +++.+.++..+++|+.|++|.+|...+..+.
T Consensus 17 Vr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 17 VRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred hheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 55666554 45799999999999999887776665555578888877 8887556667999999999999999886652
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.. -..|...|.+++...++. +++|+.|.++++|-. ++....+.+ |+..|++++.-|++ .++|||.
T Consensus 95 -~~--------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsa 159 (745)
T KOG0301|consen 95 -YT--------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSA 159 (745)
T ss_pred -hh--------hhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccC
Confidence 22 234556788888755444 899999999999965 556666886 99999999999987 8999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccc---ccccCeEEEEECCCCCcc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR---DFNMSILAAYTRPSSKSE 690 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~---~~~~~V~~v~fsP~~~~~ 690 (721)
|.+||+|.-.+ . +.++.+|...+ .+++-+++.+ ++++.||.|+.|++.|..+. +|..-|.++...+..
T Consensus 160 DKtIklWk~~~--~--l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~--- 231 (745)
T KOG0301|consen 160 DKTIKLWKGGT--L--LKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSD--- 231 (745)
T ss_pred cceeeeccCCc--h--hhhhccchhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeeccceEEEEEEecCCC---
Confidence 99999998643 2 55678899988 7888877555 56788999999999877654 456678888865655
Q ss_pred cccccEEEEecCC
Q 004969 691 IVKVNLLASTDHC 703 (721)
Q Consensus 691 ~v~v~lLASgs~~ 703 (721)
.+++|++..
T Consensus 232 ----~~Ivs~gED 240 (745)
T KOG0301|consen 232 ----GLIVSTGED 240 (745)
T ss_pred ----CeEEEecCC
Confidence 677887765
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.8e-14 Score=153.41 Aligned_cols=233 Identities=16% Similarity=0.198 Sum_probs=182.1
Q ss_pred cCeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 454 FRPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 454 ~~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+++.+..|.| +|. .+++++.....+.||+.+.+..+.-+..++. ..+.....+ +++++|+..|..|.|.+....++
T Consensus 258 fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 258 FPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred CccceeeecC-CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhh
Confidence 4688999999 666 9999999999999999988876655544554 356666766 78899999999999999998886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.. ...+...+.|..++|++++..+++++.+|.|.+||+++..+++.+.....-.-++++.++++ .++|+
T Consensus 336 el----------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng-~ylA~ 404 (514)
T KOG2055|consen 336 EL----------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG-SYLAT 404 (514)
T ss_pred hh----------hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-ceEEe
Confidence 54 34555567789999999999999999999999999999999999883222233567778888 79999
Q ss_pred EECCCcEEEEECCC----CCceeEEEecCCCCeE-EEEEecCCCEEEEEeC--CCcEEEEEcCCCc-cccc------ccC
Q 004969 612 SSFDQDVKLWDLRQ----KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS--GTSMFVQSLRGDP-FRDF------NMS 677 (721)
Q Consensus 612 gs~DgtIrIWDlrs----~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~--Dg~I~VWDl~g~~-l~~~------~~~ 677 (721)
|+..|.|.|||..+ ..+.|+..+..-...+ ++.|+||++.|+.++. ++.+++-.+...+ +..+ -+.
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 99999999999654 3456666665544455 8999999999987764 5677776665321 2222 247
Q ss_pred eEEEEECCCCCcccccccEEEEecCCCcc
Q 004969 678 ILAAYTRPSSKSEIVKVNLLASTDHCDKE 706 (721)
Q Consensus 678 V~~v~fsP~~~~~~v~v~lLASgs~~~ke 706 (721)
|.+++|+|.+ -.+|.|....+-
T Consensus 485 vtc~aFSP~s-------G~lAvGNe~grv 506 (514)
T KOG2055|consen 485 VTCMAFSPNS-------GYLAVGNEAGRV 506 (514)
T ss_pred eEEEEecCCC-------ceEEeecCCCce
Confidence 9999999999 899998877443
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.4e-15 Score=151.58 Aligned_cols=182 Identities=19% Similarity=0.244 Sum_probs=138.1
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.++.+++|.+ ...+++|+.||.|+.+|+.++.....- .|..+|.+|.++ +..+.+++||+|++|++||.+....
T Consensus 55 ~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ig---th~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 55 APLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIG---THDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred CceeeeeccC--CceEEEeccCceEEEEEecCCcceeec---cCCCceEEEEee-ccCCeEEEcccCccEEEEecccccc
Confidence 3688999987 467999999999999999988765433 688999999998 6778999999999999999996322
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------------EEE------------
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---------------RLQ------------ 586 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---------------~v~------------ 586 (721)
...+.....|.++.. .++.+++|+.|..+.+||+++.. .+.
T Consensus 129 ----------~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 129 ----------VGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ----------ccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 223333346677766 56777777778888888877531 111
Q ss_pred ---------------------EEccccC---------CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969 587 ---------------------VFADMHK---------EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS 636 (721)
Q Consensus 587 ---------------------~l~~~h~---------~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~ 636 (721)
.|+. |. .+|++|+|+|-. ..||||+.||.|-+||+.+.+. +..+..
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr--l~q~~~ 272 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR--LKQLAK 272 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEe-eecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh--hhhccC
Confidence 1221 21 368999999987 6999999999999999998743 444555
Q ss_pred CCCeE-EEEEecCCCEEEEEeC
Q 004969 637 SKGNV-MVCFSPDDHYLLGKGS 657 (721)
Q Consensus 637 ~~~~v-sl~fSpdg~~Lasgs~ 657 (721)
....+ +++|+.+|..||+++.
T Consensus 273 ~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 273 YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCceEEEEeccCCCeEEEEec
Confidence 54444 8999999999999873
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.8e-16 Score=182.53 Aligned_cols=208 Identities=17% Similarity=0.249 Sum_probs=164.9
Q ss_pred CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
|...|+.+.|++..++++|+|+.||.|.|||+.+-+.-.......-...|.+++|+......|++++.+|.+.|||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 33469999999977889999999999999999875443333222345789999999777789999999999999999997
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeC-C--CcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGY-S--KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~-D--g~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
+..+..-.... ...+..+.|||++. .+++++. | -.|.+||+|. ..+++++.+ |...|.++.|.+.++
T Consensus 195 ~pii~ls~~~~-------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 195 KPIIKLSDTPG-------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDP 266 (1049)
T ss_pred CcccccccCCC-------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCc
Confidence 65333222111 13468999999874 3444443 3 4699999995 567788876 999999999999998
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCC
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~ 669 (721)
.++++++.|+.|.+|+..+++. +..+.....++ .+.|.|... .+++++-||.|.||.+.+.
T Consensus 267 ~lllSsgkD~~ii~wN~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhcccCCCCeeEecCCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999854 66677666676 899999766 7788899999999998843
No 147
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=143.78 Aligned_cols=223 Identities=15% Similarity=0.211 Sum_probs=158.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC--------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN--------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t--------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
|.+-+|+| .++++++|..+|+|.+..+.+ ......++..+|.++|..++|. ..+|++|+. |.|+-|.
T Consensus 13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 45567899 899999999999999998752 1112233335999999999996 467777765 9999998
Q ss_pred cCCCCCcccccccCcceeE----eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 528 IRHMPPSIRGMHYGAGTVT----FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~----~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
.+..........-...... ...--.|+++...|..+.++.++.|+.++-||+++|+..+++++ |++.|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-Ccceeeeeeecc
Confidence 7754331111100000000 11123589999999999999989999999999999999999998 999999998844
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecC-------CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccc
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-------SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRD 673 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-------~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~ 673 (721)
.. ..+++|+.||++|+||++++++..+..... +.+..-.+..-+..++++|+ .-.+.+|.++... .-+
T Consensus 167 ~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 167 AN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 44 378999999999999999987765543222 22222245556788999876 6688999998432 233
Q ss_pred cccCeEEEEECCC
Q 004969 674 FNMSILAAYTRPS 686 (721)
Q Consensus 674 ~~~~V~~v~fsP~ 686 (721)
+...+..+.|--+
T Consensus 245 ipa~v~~v~F~~d 257 (325)
T KOG0649|consen 245 IPARVHLVDFVDD 257 (325)
T ss_pred cccceeEeeeecc
Confidence 3556666666544
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.9e-15 Score=153.61 Aligned_cols=191 Identities=14% Similarity=0.330 Sum_probs=152.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
..+|++...|.|++||..+|+.+..++ ++...+..+.|... .+..+.+|+.||+|++||++.....- ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--------~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--------RI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--------he
Confidence 678999999999999999999999888 78888889999743 56789999999999999999865522 12
Q ss_pred EeccC--CCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969 546 TFDEF--DQLTSVHVNSMDELFLASG----YSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 546 ~~~~~--~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI 618 (721)
.+... .+..+++.+..++.+++|. .+..|.+||+|..+. +..+...|...|+++.|+|..++++++||.||.|
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 22222 3567788766777777775 367899999998766 7788777999999999999999999999999999
Q ss_pred EEEECCCCCc-eeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC
Q 004969 619 KLWDLRQKPI-QPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 619 rIWDlrs~~~-~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~ 667 (721)
.+||+....- .++...-.+...+ ++.|..++ +.|.+-+..++..+|+++
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999986421 1223333444545 89999887 457778889999999987
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=5.3e-15 Score=149.77 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=151.7
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--cccccccCcceeEec----cCCCeEEEEEecCCCE-EEEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTFD----EFDQLTSVHVNSMDEL-FLAS 568 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~--~~~~~~~~~~~~~~~----~~~~V~sv~~sp~~~~-lls~ 568 (721)
.|.+.|+++..-+..++++++|+.||.|.+||++.... .....-.+...+..+ |.-.|.++.|-|-+.- |.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 57789999998888899999999999999999986431 000111122222222 4456999999987654 5555
Q ss_pred eCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEE
Q 004969 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF 645 (721)
Q Consensus 569 g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~f 645 (721)
+-|.++++||..+-+....|+ ..+.|++-+++|-.. .++|+|..|-.|++-|+.++.+ .+.+.+|.+.+ ++.|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeeccccCceEEEEe
Confidence 579999999999999988887 778899999988542 5888999999999999999965 67788998888 9999
Q ss_pred ecCCCE-EEEEeCCCcEEEEEcCCC--cc-----------------cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 646 SPDDHY-LLGKGSGTSMFVQSLRGD--PF-----------------RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 646 Spdg~~-Lasgs~Dg~I~VWDl~g~--~l-----------------~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|...| |++|+.||.|++||++.. .+ ..|.+.|.+++|..++ ..+++++..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-------~~l~~~gtd 267 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-------RYLASCGTD 267 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-------hhhhhccCc
Confidence 997776 478899999999999832 11 1235688999999998 667776665
No 150
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=1.2e-14 Score=147.08 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=177.0
Q ss_pred CccCeEEEEEeCCC----CCEEEEEECCCeEEEEECCCC--eEE-----EEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969 452 RSFRPRQFEYHPSI----SCLMVFGTLDGEIVVVNHENE--NIV-----SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (721)
Q Consensus 452 ~~~~V~~lafsP~d----g~~LasGs~DG~I~IWdl~tg--~~i-----~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D 520 (721)
+...++.+-|.|+. ..+||+.+ -.+|+|.+... +.. ..-+...+..++++..|+..+.+++.++|-|
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 34568999999932 35666654 36999998742 211 1111235568999999998899999999999
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEc-ccc-CCCeE
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFA-DMH-KEHIN 597 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~-~~h-~~~V~ 597 (721)
-+..|||++++.. ++....-..|..+|..++|...+ +.|+++|.||.||+||+|..+....+. ... ..+..
T Consensus 173 TTCTiWdie~~~~------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 173 TTCTIWDIETGVS------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred CeEEEEEEeeccc------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 9999999999622 22334455688899999997644 578888999999999999765443333 212 56788
Q ss_pred EEEEcCCCCcEEEEEECCC-cEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc----
Q 004969 598 VVKFSNHSPSIFATSSFDQ-DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP---- 670 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~Dg-tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~---- 670 (721)
.++|++..++++||-..|+ .|.|-|+|.. +.++..+.+|.+.+ .++|.| ....|+++|.|..+.+||+..-+
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCC-CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 8999999999999876664 5999999984 67888999999998 899999 56789999999999999997221
Q ss_pred ---cc--ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 ---FR--DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 ---l~--~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+. .-++.|..++|+|... ..||.+.+-
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~------Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQP------DWIAICFGK 357 (364)
T ss_pred CCchhhhhccceeeeeeecccCC------CEEEEEecC
Confidence 11 1256899999997653 566666553
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.64 E-value=5.4e-15 Score=157.33 Aligned_cols=234 Identities=14% Similarity=0.193 Sum_probs=170.5
Q ss_pred CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+...|.++.|+|.+...+.+.+.||+|+.-|++++.....+........+.++.|+ .+...++.+..=|...+||.++
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec
Confidence 344469999999999999999999999999999876544444332334567788886 6666777777777999999998
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCC--cE---EEEEccccCCCeEEEEEcCC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSG--RR---LQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~--~~---v~~l~~~h~~~V~sI~fsPd 604 (721)
+...+..+. .|...|.+++++|..++ ++++|.|++.+|||++.- +. +..+. |...|.++.|+|.
T Consensus 311 ~~s~~~~~~--------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 311 DGSEYENLR--------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPS 380 (498)
T ss_pred CCccchhhh--------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCC
Confidence 765332222 24457899999998766 555667999999999963 22 33443 9999999999999
Q ss_pred CCcEEEEEECCCcEEEEECC----CCCceeEEEecC-CCCe---EEEEEecCCCEEEEEeCCCcEEEEEcCCCc-ccccc
Q 004969 605 SPSIFATSSFDQDVKLWDLR----QKPIQPCYTASS-SKGN---VMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDFN 675 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlr----s~~~~~~~~~~~-~~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~~ 675 (721)
+++ ++|.+.|..|||||.. ............ +..+ ....|.|+..++++|..-..|-|+|-.++. +..+.
T Consensus 381 ~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 381 GGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH 459 (498)
T ss_pred CCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence 965 9999999999999984 221111111111 1122 268999999999999999999999988655 33322
Q ss_pred ----cCeEE-EEECCCCCcccccccEEEEecCC
Q 004969 676 ----MSILA-AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 676 ----~~V~~-v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..|.+ .+|||.. ..+++|+..
T Consensus 460 ~P~~~tI~~vn~~HP~~-------~~~~aG~~s 485 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMR-------DTLAAGGNS 485 (498)
T ss_pred Cccccccccceeecccc-------cceeccCCc
Confidence 23444 6899998 777777765
No 152
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.63 E-value=4.8e-17 Score=159.46 Aligned_cols=148 Identities=30% Similarity=0.455 Sum_probs=74.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.|+|..+|+. -++.-+++|...=-.-++|||+.|.|++|+.++.+++|++|+|+ +|+|+++.+.++.++|+|+.|+|
T Consensus 19 ~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccc--cccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEEC
Confidence 4789999999 67777899885333457899999999999999999999999999 99999998877789999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCcceeecCCCcccccCCCC
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSD 259 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (721)
.+|+|+++ ..+..|++||+|+.|
T Consensus 96 ~~N~I~~l-~~l~~L~~l~~L~~L-------------------------------------------------------- 118 (175)
T PF14580_consen 96 SNNKISDL-NELEPLSSLPKLRVL-------------------------------------------------------- 118 (175)
T ss_dssp TTS---SC-CCCGGGGG-TT--EE--------------------------------------------------------
T ss_pred cCCcCCCh-HHhHHHHcCCCccee--------------------------------------------------------
Confidence 99999985 888888888888544
Q ss_pred CccchhcccccchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhcccccccccccCCCCccchHHHH
Q 004969 260 DSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYR 339 (721)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pi~~~~~yR 339 (721)
..+++|++..++||
T Consensus 119 ------------------------------------------------------------------~L~~NPv~~~~~YR 132 (175)
T PF14580_consen 119 ------------------------------------------------------------------SLEGNPVCEKKNYR 132 (175)
T ss_dssp ------------------------------------------------------------------E-TT-GGGGSTTHH
T ss_pred ------------------------------------------------------------------eccCCcccchhhHH
Confidence 47889999999999
Q ss_pred HHHHHhCccccccCCCCcChHHHHhhhccccccc
Q 004969 340 DYMIASLPKLKFLDNLPIRKVDRERATITYSQYF 373 (721)
Q Consensus 340 e~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~~~~~l 373 (721)
.|++.++|+|+.||+..+++.+|+.|...|....
T Consensus 133 ~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~~ 166 (175)
T PF14580_consen 133 LFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGKR 166 (175)
T ss_dssp HHHHHH-TT-SEETTEETTS-B------------
T ss_pred HHHHHHcChhheeCCEEccHHHhccccccccccc
Confidence 9999999999999999999999999988876543
No 153
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=1e-14 Score=165.40 Aligned_cols=212 Identities=17% Similarity=0.251 Sum_probs=167.5
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEE--eecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEE
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSY--IPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYD 527 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~--l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWD 527 (721)
..|+|+.|+|.++.++|.|..+|.|.+||+..+.. ... .....|..+|+.+.|. .+. .-+++++.||.|..|+
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~-~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL-QNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe-ccCCCCceEEEecCCcEeeee
Confidence 35999999999999999999999999999987654 222 2234789999999997 333 4589999999999998
Q ss_pred cCCCCCccccc---------------------------------------------cc--Ccc------e-eEeccCCCe
Q 004969 528 IRHMPPSIRGM---------------------------------------------HY--GAG------T-VTFDEFDQL 553 (721)
Q Consensus 528 i~~~~~~~~~~---------------------------------------------~~--~~~------~-~~~~~~~~V 553 (721)
++.-....... .+ ... . ....|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 87422100000 00 000 0 112356789
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE
Q 004969 554 TSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632 (721)
Q Consensus 554 ~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~ 632 (721)
+++.++|-+..++.++.|.+++||... ...++..+.. +...|++++|+|..+..|+++..||.+.+||+......|+.
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 999999999888888779999999988 7778877775 77889999999999999999999999999999987777777
Q ss_pred EecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 633 TASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 633 ~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+........ .+.|+++|+.|++|...|.+++|++.
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 665554444 78899999999999999999999996
No 154
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.7e-14 Score=163.83 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=168.0
Q ss_pred cCCCCCCCCCccCeEEEEEeC-CCCCEEEEEECCCeEEEEECC-C----CeEEEEeec-----CCCCCCeEEEEEeeCCC
Q 004969 443 SGNHMGDENRSFRPRQFEYHP-SISCLMVFGTLDGEIVVVNHE-N----ENIVSYIPS-----FGAMNSVLGLCWLKKYP 511 (721)
Q Consensus 443 ~gh~~~~~~~~~~V~~lafsP-~dg~~LasGs~DG~I~IWdl~-t----g~~i~~l~~-----~~H~~~V~sl~fsp~d~ 511 (721)
.+...+.... -+|+.+.+-. +|..++++|+.||.|+||+-. + .+.+..+.. .+..+.-.-+.|. +..
T Consensus 1100 ~~F~n~~~~~-t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~ 1177 (1387)
T KOG1517|consen 1100 NGFDNGAFPD-TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQS 1177 (1387)
T ss_pred ccccCCCCCC-CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh-hhC
Confidence 3444444322 2688888765 477899999999999999743 2 233332221 1112222457887 555
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc---EEEE
Q 004969 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGR---RLQV 587 (721)
Q Consensus 512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~---~v~~ 587 (721)
.+|+++|.-..|+|||........... +.....|+++.-+.. |+.+++|-.||.|++||.+... .+..
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP--------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIP--------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecc--------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 667777778899999999865421111 112233566654433 5777777799999999999643 4556
Q ss_pred EccccCCC--eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC--C--eEEEEEecCCCEEEEEeCCCcE
Q 004969 588 FADMHKEH--INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--G--NVMVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 588 l~~~h~~~--V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~--~vsl~fSpdg~~Lasgs~Dg~I 661 (721)
.+. |... |..+.+.+.|-..+++|+.||.|++||+|............+. + .+++..+++...+|+|+. +.|
T Consensus 1250 ~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1250 YRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred ecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 665 8877 9999999988556999999999999999985333233332222 3 448999999999999998 999
Q ss_pred EEEEcCCCccccc----------ccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969 662 FVQSLRGDPFRDF----------NMSILAAYTRPSSKSEIVKVNLLASTDHCD 704 (721)
Q Consensus 662 ~VWDl~g~~l~~~----------~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ 704 (721)
+||++.|..+..+ .+++.+++|||.. .+||.|+...
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-------~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-------LLLAAGSADS 1373 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecchh-------HhhhhccCCc
Confidence 9999997654332 3578999999998 8888886653
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=9.8e-14 Score=153.77 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=160.9
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+|-+++|++ +.+|++.+.+|.|.-||+.+++....+. ...++|++++.+ +.++.++.|++||.+..++...+..
T Consensus 70 rsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 70 RSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQKYNID--SNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred CceeeEEEcc--CCeEEeecCCceEEEEecccCceeEEec--CCCcceeEEEeC-CccceEEeecCCceEEEEecCCceE
Confidence 3699999996 5778899999999999999999988887 556899999998 6778999999999777777766543
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc----c---ccCCCeEEEEEcCCCC
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----D---MHKEHINVVKFSNHSP 606 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~----~---~h~~~V~sI~fsPdg~ 606 (721)
... ..-....+.|.+++|++++..+++|+.||.|++||..++..++... + ....-|+++.|-.++
T Consensus 145 ~~~-------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 145 TYK-------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred EEE-------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence 221 1111234679999999999999999999999999999998776221 1 123357888888776
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
.+++|..-|+|.+||...+.. +..+..|.+.+ +++..+++.+++++|.|+.|.-|...+.
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTL--iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTL--IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred -cEEEecCCceEEEEcccCcch--hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 899999999999999999855 44555666666 9999999999999999999988887643
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=4.3e-15 Score=152.54 Aligned_cols=221 Identities=13% Similarity=0.144 Sum_probs=163.3
Q ss_pred eEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
-..++|+-. ...++|+|+.-|.|+|.|+.++++...+. +|.++|..+.++|..++++++||.|.+||+|++++..
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 345666542 34689999999999999999999999888 8999999999999899999999999999999999976
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE------E-------------------EE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------L-------------------QV 587 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~------v-------------------~~ 587 (721)
+. ....+ ...|.+.|.+++|+.++..++++|.|.++++|++...+. . ..
T Consensus 170 Cv-~VfGG-----~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 170 CV-AVFGG-----VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred EE-EEecc-----cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 52 11111 113567899999999999999999999999999983210 0 01
Q ss_pred E--ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCc-----------eeEEEecCCC--Ce-EEEEEecCCC
Q 004969 588 F--ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPI-----------QPCYTASSSK--GN-VMVCFSPDDH 650 (721)
Q Consensus 588 l--~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~-----------~~~~~~~~~~--~~-vsl~fSpdg~ 650 (721)
| ...|...|.|+.|- | .++++-|-++.|..|..-. ++. .....+.-.. .+ +..+|.|-++
T Consensus 244 fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred ccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 1 12367777777775 4 6899999999999998721 110 0111222111 12 2678889999
Q ss_pred EEEEEeCCCcEEEEEcCCCcc---cc--c---ccCeEEEEECCCC
Q 004969 651 YLLGKGSGTSMFVQSLRGDPF---RD--F---NMSILAAYTRPSS 687 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~g~~l---~~--~---~~~V~~v~fsP~~ 687 (721)
+||.|...|.+++||++...- .. | ...|...+|+-++
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 999999999999999983221 11 1 3468889999998
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=5e-14 Score=147.64 Aligned_cols=165 Identities=15% Similarity=0.299 Sum_probs=133.2
Q ss_pred CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecCC-CEEEEEeCCC
Q 004969 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSMD-ELFLASGYSK 572 (721)
Q Consensus 495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~~-~~lls~g~Dg 572 (721)
.||+++|..++|+|.+...+||||.|.+|.||.+..+... ..+. ...+ -..|...|.-+.|||.. +.++++|.|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~lt--epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLT--EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cCcc--cceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3999999999999999999999999999999999875432 1111 1222 33456678999999986 5667788999
Q ss_pred cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE--EEEEecCCC
Q 004969 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV--MVCFSPDDH 650 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v--sl~fSpdg~ 650 (721)
+|.+|++.+|+.+.++. |...|+++.|+.+| .+++|.+.|..|||||.|+++. +....+|.+.- .+.|-.+|.
T Consensus 155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~--v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV--VSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred eEEEEeccCCceeeecC--CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE--eeecccccCCCcceeEEeccCc
Confidence 99999999999998887 99999999999999 8999999999999999999965 44445555543 688989999
Q ss_pred EEEEEe---CCCcEEEEEcC
Q 004969 651 YLLGKG---SGTSMFVQSLR 667 (721)
Q Consensus 651 ~Lasgs---~Dg~I~VWDl~ 667 (721)
.+.||- .+..+-+||-.
T Consensus 230 i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred eeeeccccccccceeccCcc
Confidence 555552 35678899865
No 158
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.4e-13 Score=147.03 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=165.8
Q ss_pred EEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 468 LMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 468 ~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
+++++.. -..|.+|.+.......... --.++|.+++-+ +.|.+|+.|+..|.+++|.+.+|.... +.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~---------v~ 119 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLN---------VL 119 (476)
T ss_pred heeeecccCccccccccCchhhhhhhc--ccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHH---------HH
Confidence 4444433 3467778776543333111 224679999976 788999988899999999999987631 12
Q ss_pred eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---------CCcEEEEEccccCCCeEEEEEcCCC-CcEEEEEECCC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---------SGRRLQVFADMHKEHINVVKFSNHS-PSIFATSSFDQ 616 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---------s~~~v~~l~~~h~~~V~sI~fsPdg-~~lLaSgs~Dg 616 (721)
..|...|+++.|+-+|.+|++||.||.|.+|++. +-++.+.|.. |.-+|+.+...+.| ...++|+|.|.
T Consensus 120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCc
Confidence 3455679999999999999999999999999874 2467788887 99999999988764 25899999999
Q ss_pred cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc--------------------cccccc
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP--------------------FRDFNM 676 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--------------------l~~~~~ 676 (721)
++|+||+..+.... ++.......+++.+|.++.+++|+.+|.|.+.++.+-+ +.+|..
T Consensus 199 t~k~wdlS~g~LLl--ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLL--TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred eEEEEEeccceeeE--EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 99999999986543 33333445589999999999999999999987764211 344544
Q ss_pred --CeEEEEECCCCCcccccccEEEEecCCCc
Q 004969 677 --SILAAYTRPSSKSEIVKVNLLASTDHCDK 705 (721)
Q Consensus 677 --~V~~v~fsP~~~~~~v~v~lLASgs~~~k 705 (721)
.|.+++.+-++ .+|++|+...+
T Consensus 277 ~~~ITcLais~Dg-------tlLlSGd~dg~ 300 (476)
T KOG0646|consen 277 ESAITCLAISTDG-------TLLLSGDEDGK 300 (476)
T ss_pred CcceeEEEEecCc-------cEEEeeCCCCC
Confidence 89999999999 99999998854
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.59 E-value=3.8e-14 Score=155.85 Aligned_cols=230 Identities=16% Similarity=0.275 Sum_probs=157.6
Q ss_pred EEEEeC--CCCCEEEEEECCCeEEEEECCCCeEE----EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 458 QFEYHP--SISCLMVFGTLDGEIVVVNHENENIV----SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 458 ~lafsP--~dg~~LasGs~DG~I~IWdl~tg~~i----~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+..|++ ....+|+.+..||.|.++|....... +......|.++|..+.|-| ....|++++.|.++++||+.+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc
Confidence 345554 35578999999999999998643222 1122248999999999985 7789999999999999999986
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc--------------------EEEEEc-
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR--------------------RLQVFA- 589 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~--------------------~v~~l~- 589 (721)
... .....+.|...|.+++|.+.+.. |++||.||.|.|||++-.. +...+.
T Consensus 133 ~l~-------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 133 RLV-------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eee-------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 652 12256678888999999998765 5566789999999998432 000000
Q ss_pred -----cccCCCeEE---EEEcCCCCcEEEEEEC-CCcEEEEECCCCCce------eEEEecCC----CCeEEEEEecCCC
Q 004969 590 -----DMHKEHINV---VKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQ------PCYTASSS----KGNVMVCFSPDDH 650 (721)
Q Consensus 590 -----~~h~~~V~s---I~fsPdg~~lLaSgs~-DgtIrIWDlrs~~~~------~~~~~~~~----~~~vsl~fSpdg~ 650 (721)
.++...|.+ +.+..|. ..||+++. |+.|+|||+|..... ....+..+ .+.+++.....|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 023333443 3344455 68888877 999999999975321 11222222 3445788888999
Q ss_pred EEEEEeCCCcEEEEEcCCCc---ccccccC-----eEEEEECCCCCcccccccEEEEecCC
Q 004969 651 YLLGKGSGTSMFVQSLRGDP---FRDFNMS-----ILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~g~~---l~~~~~~-----V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|++.+.|+.|+.|++.+.. ...|.+. -..-..+|++ ..++||+..
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-------~~l~SgSsd 338 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-------CSLLSGSSD 338 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-------ceEeccCCC
Confidence 99999999999999998432 2222221 1122457888 888888887
No 160
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.8e-13 Score=139.66 Aligned_cols=210 Identities=14% Similarity=0.204 Sum_probs=149.8
Q ss_pred CeEEEEEe-CCCCCEEEEEECCCeEEEEECCC------C-eEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEE
Q 004969 455 RPRQFEYH-PSISCLMVFGTLDGEIVVVNHEN------E-NIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKL 525 (721)
Q Consensus 455 ~V~~lafs-P~dg~~LasGs~DG~I~IWdl~t------g-~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrI 525 (721)
.|..|.|- |.-|+.+|+++.|+++.||.-.. | +-+..-........|++|+|.|.. |-.+++++.||++||
T Consensus 61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 57888885 56789999999999999998521 1 222222223567899999998754 568999999999999
Q ss_pred EEcCCCCCccccccc-Ccc----eeEeccCCCeEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC----cEEEEE
Q 004969 526 YDIRHMPPSIRGMHY-GAG----TVTFDEFDQLTSVHVNSM---DELFLASGYS-----KNIALYDINSG----RRLQVF 588 (721)
Q Consensus 526 WDi~~~~~~~~~~~~-~~~----~~~~~~~~~V~sv~~sp~---~~~lls~g~D-----g~IrlWDl~s~----~~v~~l 588 (721)
|+.-..-.. ....- +.- ...-.+..+..|+.|+|. .+.|++|+.+ +.+.||....+ ..+.++
T Consensus 141 YEA~dp~nL-s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 141 YEAPDPMNL-SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EecCCcccc-ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 998653221 00000 000 001123456789999875 3566666654 47899977643 245566
Q ss_pred ccccCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECCCC------------------CceeEEEecCCCCeE-EEEEe
Q 004969 589 ADMHKEHINVVKFSNHSP---SIFATSSFDQDVKLWDLRQK------------------PIQPCYTASSSKGNV-MVCFS 646 (721)
Q Consensus 589 ~~~h~~~V~sI~fsPdg~---~lLaSgs~DgtIrIWDlrs~------------------~~~~~~~~~~~~~~v-sl~fS 646 (721)
.+ |+.+|+.|+|.|.-+ .++|+++.|| |+||.++.. +...+..+.+|.+.+ .+.|+
T Consensus 220 ~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 220 PD-HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred CC-CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 66 999999999999753 5899999999 999998731 112234567888777 99999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~ 667 (721)
-.|..|++.|.||.+++|...
T Consensus 298 mtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeEEeecCCCceeeehhhh
Confidence 999999999999999999765
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=1.2e-14 Score=158.86 Aligned_cols=202 Identities=14% Similarity=0.261 Sum_probs=153.7
Q ss_pred EEeCCCCCEEEE--EECCCeEEEEECCCCeEE--EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 460 EYHPSISCLMVF--GTLDGEIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 460 afsP~dg~~Las--Gs~DG~I~IWdl~tg~~i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
-|+. +..++|+ .+..|.|-||++.....+ ..+...-....|+.+.|.|.+...|+.+++||.|++|.+..+...-
T Consensus 586 Gfca-n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 586 GFCA-NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred ceee-ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 3455 4556655 455799999998743221 1112112346799999999999999999999999999998754321
Q ss_pred cccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
. ......+.-.|...|+++.|||-. +.++++++|-+|++||+++++....+.+ |.+.|..++|+|+| +.+|+.+.
T Consensus 665 ~--~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdG-r~~AtVcK 740 (1012)
T KOG1445|consen 665 N--EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDG-RRIATVCK 740 (1012)
T ss_pred c--cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCC-cceeeeec
Confidence 1 112223334567889999999964 5677788999999999999999889997 99999999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE--EEEEecCCCEEEEEeCCC----cEEEEEcC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV--MVCFSPDDHYLLGKGSGT----SMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v--sl~fSpdg~~Lasgs~Dg----~I~VWDl~ 667 (721)
||+|++|..++++ .+++...+..+.- .+.|.-||+++++.+.|. .|.+||..
T Consensus 741 Dg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 741 DGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 9999999999874 5566655443332 689999999999887665 57788865
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.58 E-value=6.3e-14 Score=141.97 Aligned_cols=195 Identities=17% Similarity=0.281 Sum_probs=151.0
Q ss_pred CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.++..++++.|+..+.++|.+.+-|-+..|||+++|.. +++ +..+|...|..++|.....+.+++.|.||.||++|+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 34557999999999999999999999999999998733 222 233899999999998655689999999999999999
Q ss_pred CCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEE-EeC-CCcEEEEECCC-CcEEEEEccccCCCeEEEEEc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLA-SGY-SKNIALYDINS-GRRLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls-~g~-Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fs 602 (721)
+.-.. . .+.+.. ..+...++|++.+..+++ -.. ...|.|.|+|. ..++..+++ |.+.|++|+|.
T Consensus 227 R~leH--------S-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWa 296 (364)
T KOG0290|consen 227 RSLEH--------S-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWA 296 (364)
T ss_pred ccccc--------c-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEec
Confidence 98443 2 222222 346888999988765544 444 46799999996 567888887 99999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCc----eeEEEecCCCCeEEEEEec-CCCEEEEEe
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTASSSKGNVMVCFSP-DDHYLLGKG 656 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~----~~~~~~~~~~~~vsl~fSp-dg~~Lasgs 656 (721)
|.....++|++.|..+-+||+.+... .++........+..+.|++ .+.+++.+.
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 99989999999999999999987432 2233333333334799996 677887765
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.9e-14 Score=153.50 Aligned_cols=208 Identities=14% Similarity=0.210 Sum_probs=158.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
++.++|+| ....+++++.||++++|+++. +.....+...+|.++|.|++.. .++..+++||.||+|+.|++.
T Consensus 297 ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 297 IRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeeeeccC
Confidence 78899999 778899999999999999932 2233334445999999999985 899999999999999999876
Q ss_pred CCCCccccccc-CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-------------------
Q 004969 530 HMPPSIRGMHY-GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA------------------- 589 (721)
Q Consensus 530 ~~~~~~~~~~~-~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------------- 589 (721)
...-....... .-......|.+.|+.+++|+..+.+++++.||++++|+.....+ .+|.
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH
Confidence 32211111100 00112345778899999999999999999999999999875443 1000
Q ss_pred --------------------------c------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969 590 --------------------------D------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS 637 (721)
Q Consensus 590 --------------------------~------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~ 637 (721)
. .....+..+.++|.+ .+.+++..|+.|+++|..++.. ++....|
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~--l~s~~a~ 530 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI--LHSMVAH 530 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc--chheeec
Confidence 0 001346678888888 6899999999999999999854 6666666
Q ss_pred CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
...+ ++++.|+|.+|++|+.|+.+++|.+..+
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccch
Confidence 6666 8999999999999999999999998743
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=5.7e-14 Score=147.85 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=131.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|.++.|.+.+.+.+++|+.|..|++|-+..+. .+.. -....|..+|+++.|+ ++++.|+||+++|.|.+|.
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLASGGDGGEVFLWK 93 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeeeecCCCceEEEEE
Confidence 488999999666699999999999999876422 1211 1124799999999998 7999999999999999998
Q ss_pred cCCCCCc----cccccc---CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969 528 IRHMPPS----IRGMHY---GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK 600 (721)
Q Consensus 528 i~~~~~~----~~~~~~---~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~ 600 (721)
....... -..... ....+...|...|..++|+|++..+++++.|..+++||+..|.....+.+ |...|..++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-h~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-HEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-cccccceee
Confidence 7731110 000000 01111223667899999999999999999999999999999999999987 999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCC
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
|.|.+ .++++-+.|...+.+.+..
T Consensus 173 wDpl~-qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 173 WDPLN-QYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cchhh-hhhhhhccCcccceeeeee
Confidence 99998 7999999998777777654
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.56 E-value=4.4e-16 Score=151.53 Aligned_cols=157 Identities=27% Similarity=0.456 Sum_probs=135.8
Q ss_pred chHHHHHHHHHhcc-cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccc
Q 004969 87 TGEFALSLMHAIDQ-KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKE 165 (721)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 165 (721)
+-|...+..+-+|. +=|.+|||+ +-+.-+.+|++.-..-+++||++|.+|||..++.+.|||||.|. +|+||.|..
T Consensus 5 t~el~~q~pqy~~~~~e~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p 81 (233)
T KOG1644|consen 5 TAELIVQAPQYINSVRERELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDP 81 (233)
T ss_pred cHHHHhhchhhhhhcccccccccc--ccccchhhccccccccceecccccchhhcccCCCccccceEEec-CCcceeecc
Confidence 33444444444442 478999999 88888899999999999999999999999999999999999999 999999999
Q ss_pred cccccccccchhccccccchhhhHHHHHhhcCCcchhhccceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCccee
Q 004969 166 DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVV 245 (721)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (721)
+--.-.|||..|.+.+|+|.+| +-|-+|-++..|
T Consensus 82 ~L~~~~p~l~~L~LtnNsi~~l----~dl~pLa~~p~L------------------------------------------ 115 (233)
T KOG1644|consen 82 DLDTFLPNLKTLILTNNSIQEL----GDLDPLASCPKL------------------------------------------ 115 (233)
T ss_pred chhhhccccceEEecCcchhhh----hhcchhccCCcc------------------------------------------
Confidence 9999999999999999999988 444444443222
Q ss_pred ecCCCcccccCCCCCccchhcccccchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhccccccccc
Q 004969 246 INPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYI 325 (721)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (721)
+|+
T Consensus 116 -----------------------------------------------------------------------------~~L 118 (233)
T KOG1644|consen 116 -----------------------------------------------------------------------------EYL 118 (233)
T ss_pred -----------------------------------------------------------------------------cee
Confidence 888
Q ss_pred ccCCCCccchHHHHHHHHHhCccccccCCCCcChHHHHhhhccc
Q 004969 326 SCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITY 369 (721)
Q Consensus 326 ~~~~~Pi~~~~~yRe~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~~ 369 (721)
+.+++|++..++||+|++..+|+|++||+..++..+|+.|...|
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999887766
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=1.2e-13 Score=142.11 Aligned_cols=208 Identities=16% Similarity=0.174 Sum_probs=152.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|..|.|+|...+++++|+.|..|++||++++.++..+-+ .||.+.|.++.|+ .++.+++|+|.|.++++|++...+-
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHH
Confidence 5888999999899999999999999999999999988865 5899999999998 7899999999999999999984321
Q ss_pred --cccc------------c---ccCcce--eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcE---------
Q 004969 534 --SIRG------------M---HYGAGT--VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRR--------- 584 (721)
Q Consensus 534 --~~~~------------~---~~~~~~--~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~--------- 584 (721)
.+.. . ..+-.. .+-.|...|.|+.| -|+++++-+.++.|..|-.. -++.
T Consensus 216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 0000 0 000000 11124455677777 56889998999999999872 1222
Q ss_pred ----EEEEccccCCCeEEE--EEcCCCCcEEEEEECCCcEEEEECCCCCcee--EEEecCCCCeE-EEEEecCCCEEEEE
Q 004969 585 ----LQVFADMHKEHINVV--KFSNHSPSIFATSSFDQDVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPDDHYLLGK 655 (721)
Q Consensus 585 ----v~~l~~~h~~~V~sI--~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpdg~~Lasg 655 (721)
+..+.- ....|.-+ +|.|.+ ..+|.|...|.|.+||++...... ..........+ ..+||.||..|+..
T Consensus 294 ~~Ti~~~~~~-~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 294 ATTILGEFDY-PMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred ceeeeeEecc-CccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 222322 23445544 455666 789999999999999999865422 22222233344 78999999999999
Q ss_pred eCCCcEEEEEcC
Q 004969 656 GSGTSMFVQSLR 667 (721)
Q Consensus 656 s~Dg~I~VWDl~ 667 (721)
..|+.|.-||..
T Consensus 372 cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 372 CDDGTVWRWDRV 383 (385)
T ss_pred eCCCcEEEEEee
Confidence 999999999853
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.6e-13 Score=154.83 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=169.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.++.+.|+| =...++++...-.|+|||.+.++....+.... ....|+.+.+- ..+..++++|+.||.||||+--...
T Consensus 1066 ~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 367788999 44566666666689999999999887776421 23578888885 2344689999999999999764432
Q ss_pred -CcccccccCcceeE--eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 533 -PSIRGMHYGAGTVT--FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 -~~~~~~~~~~~~~~--~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
.....+.+..+... ....+.=.-++|....++++++|+-..|+|||....+.++.+..+....|+++.-+-.+++++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 11111111111100 000111144678888899999998899999999998888887754666778776654445899
Q ss_pred EEEECCCcEEEEECCCCCce-eEEEecCCCCe---EEEEEecCCCE-EEEEeCCCcEEEEEcCCCcccc------c---c
Q 004969 610 ATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGN---VMVCFSPDDHY-LLGKGSGTSMFVQSLRGDPFRD------F---N 675 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~---vsl~fSpdg~~-Lasgs~Dg~I~VWDl~g~~l~~------~---~ 675 (721)
++|..||.||+||.|..... .+.....|... +.+.+.+.|-- |++|+.+|.|++||+++.+... + .
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 99999999999999975432 23333444433 47888887754 9999999999999999633111 1 2
Q ss_pred cCeEEEEECCCCCcccccccEEEEecCC
Q 004969 676 MSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 676 ~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+..+++..|++. +++|+|+..
T Consensus 1305 s~lTal~VH~ha-------piiAsGs~q 1325 (1387)
T KOG1517|consen 1305 SALTALTVHEHA-------PIIASGSAQ 1325 (1387)
T ss_pred ccceeeeeccCC-------CeeeecCcc
Confidence 248889999999 999999953
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=3.9e-12 Score=135.74 Aligned_cols=227 Identities=24% Similarity=0.357 Sum_probs=173.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEE-eeCCCC-EEEEEeC-CCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCW-LKKYPS-KLIAGSD-NGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~f-sp~d~~-~LaSgs~-DGtVrIWDi~~ 530 (721)
.+.++.+.+ .+..++.++.|+.+.+|+...+. ....+.. .+...+..+.+ . +++. .++..+. |+.+++|+...
T Consensus 67 ~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 67 SITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred eEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecC
Confidence 588999999 88999999999999999998876 5555552 12236777776 5 4444 5555455 99999999987
Q ss_pred -CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 -MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 -~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
... ......|...|..++|+|++..+++++. |+.+++|++..+..+..+.+ |...|.+++|+|+++..
T Consensus 144 ~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 144 PGKL---------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLL 213 (466)
T ss_pred CCeE---------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceE
Confidence 221 1223345567889999999998888885 99999999999899999987 99999999999998435
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEE-EEecCCCEEEEEeCCCcEEEEEcCCCc--c---cccccCeEEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV-CFSPDDHYLLGKGSGTSMFVQSLRGDP--F---RDFNMSILAAY 682 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl-~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l---~~~~~~V~~v~ 682 (721)
+++++.|+.|++||...+..... .+.+|.... + .|+|++.++++++.|+.+++|+++... + ..|...+..+.
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE
Confidence 66669999999999886543221 455555553 3 799999999999999999999998332 1 23467899999
Q ss_pred ECCCCCcccccccEEEEecCC
Q 004969 683 TRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+|.+ ..+++++..
T Consensus 292 ~~~~~-------~~~~~~~~d 305 (466)
T COG2319 292 FSPDG-------KLLASGSSD 305 (466)
T ss_pred ECCCC-------CEEEEeeCC
Confidence 99977 666665444
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=3.9e-14 Score=154.94 Aligned_cols=228 Identities=12% Similarity=0.136 Sum_probs=165.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|+.+.|.|.|...||+++.||.|++|.+..+. ....+. +|...|+++.|+|-..+.|++++.|-+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt--~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT--IHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee--cccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 489999999999999999999999999987543 234444 88999999999998999999999999999999
Q ss_pred cCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCC
Q 004969 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
+.+++.. .....|.++|.+++|+|+|..+++.+.||+|++|..++++ +++.-.+.-...--.|.|.-+|
T Consensus 707 l~~~~~~---------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg- 776 (1012)
T KOG1445|consen 707 LANAKLY---------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG- 776 (1012)
T ss_pred hhhhhhh---------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-
Confidence 9986541 2233567889999999999999999999999999999754 4555443233344567888898
Q ss_pred cEEEEEECC----CcEEEEECCCCCceeEEE--ecCCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcC-CCc----cccc
Q 004969 607 SIFATSSFD----QDVKLWDLRQKPIQPCYT--ASSSKGNVMVCFSPDDH-YLLGKGSGTSMFVQSLR-GDP----FRDF 674 (721)
Q Consensus 607 ~lLaSgs~D----gtIrIWDlrs~~~~~~~~--~~~~~~~vsl~fSpdg~-~Lasgs~Dg~I~VWDl~-g~~----l~~~ 674 (721)
+++++.+.| +.|.+||..+-...++++ +.......--.|.+|.. .+++|-.|..|+.|.+- ..+ +..|
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 666666665 458899887643333333 33323333345666655 45677788899999876 222 3333
Q ss_pred ccC--eEEEEECCCCCcccccc
Q 004969 675 NMS--ILAAYTRPSSKSEIVKV 694 (721)
Q Consensus 675 ~~~--V~~v~fsP~~~~~~v~v 694 (721)
..+ -..++|++..++.+..+
T Consensus 857 ~sp~~hqGl~fl~K~~CdV~~V 878 (1012)
T KOG1445|consen 857 MSPVGHQGLAFLQKLKCDVMAV 878 (1012)
T ss_pred cCCCcccceeeecccccceeee
Confidence 222 23466777666655544
No 170
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.54 E-value=1.7e-12 Score=139.75 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=168.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|....|+|.+.+++++.+ .|.+..|+.+++...+..... ....-|.+++|. .+ .-+++|..+|.|.||+..+.+
T Consensus 202 ~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-en-gdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-EN-GDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred eEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEc-CC-CCEEeecCCceEEEEeCCCce
Confidence 3678999998888888776 578999999988765543221 123779999997 34 457899999999999997644
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------EEE---------------
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----------RLQ--------------- 586 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-----------~v~--------------- 586 (721)
.. ...+.|.+.|.+++.-. ++.+++|+.|..|..||-.-.+ .++
T Consensus 279 ~~---------k~~~aH~ggv~~L~~lr-~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 279 IS---------KQVHAHDGGVFSLCMLR-DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred EE---------eEeeecCCceEEEEEec-CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 31 11226778899999854 5667779999999999832100 011
Q ss_pred --------------EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969 587 --------------VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL 652 (721)
Q Consensus 587 --------------~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L 652 (721)
... +|......++.+|+. ..++|++.|+.+++|+ .. ++.++........++.|+|.| .+
T Consensus 349 N~iL~Gt~~~~f~~~v~-gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~--k~~wt~~~~d~~~~~~fhpsg-~v 421 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQ-GHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH--KLEWTKIIEDPAECADFHPSG-VV 421 (626)
T ss_pred ceEEEeeecCCceEEEE-ecccceeeEEcCCCh-hheeeccCcceEEEcc--CC--ceeEEEEecCceeEeeccCcc-eE
Confidence 112 377788899999998 7999999999999999 33 334444444455689999999 99
Q ss_pred EEEeCCCcEEEEEcCCCccc---ccccCeEEEEECCCCCcccccccEEEEecCCCccc
Q 004969 653 LGKGSGTSMFVQSLRGDPFR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC 707 (721)
Q Consensus 653 asgs~Dg~I~VWDl~g~~l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~ 707 (721)
+.|...|.-.|.|.+.+.+. .-..++..+.|+|++ .+||.|++.....
T Consensus 422 a~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G-------~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG-------AFLAVGSHDNHIY 472 (626)
T ss_pred EEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC-------CEEEEecCCCeEE
Confidence 99999999999998854322 225689999999999 9999999885443
No 171
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=8.6e-13 Score=135.15 Aligned_cols=228 Identities=14% Similarity=0.212 Sum_probs=162.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEE-Eeec------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVS-YIPS------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~-~l~~------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
.++.+.|.|+...++++.-...++++|-+.. |.... .+.. ..|.-.|..+-.. .++.++++++.|..|.
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKIC 212 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEE
Confidence 4889999996666677777777899997642 22111 1111 1455566666654 6678999999999999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CC-----cEEEEEccccCCCe
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SG-----RRLQVFADMHKEHI 596 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~-----~~v~~l~~~h~~~V 596 (721)
+|+++. +. +....... ..-+..+++|+|..++++|--..|++|.+- .| ..+..+.| |+..|
T Consensus 213 lw~lkG-q~-L~~idtnq--------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV 281 (420)
T KOG2096|consen 213 LWDLKG-QL-LQSIDTNQ--------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAV 281 (420)
T ss_pred EEecCC-ce-eeeecccc--------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhhe
Confidence 999994 33 11111111 123567889999999999988889999874 22 24556777 99999
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCCC-------CceeEE---EecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQK-------PIQPCY---TASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~-------~~~~~~---~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
...+|+|+. ..++|.|.||++||||+.-. +..... .......++.++.+|.|+.|+.+. ...++++..
T Consensus 282 ~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s 359 (420)
T KOG2096|consen 282 LAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS 359 (420)
T ss_pred eeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence 999999998 89999999999999998531 111111 112234456899999999998765 668899987
Q ss_pred C-CCcc----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 667 R-GDPF----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 667 ~-g~~l----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+ |+.+ +.|...|.+++|+|+| ..+|||+..
T Consensus 360 e~g~~~~~~e~~h~~~Is~is~~~~g-------~~~atcGdr 394 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTTISSISYSSDG-------KYIATCGDR 394 (420)
T ss_pred ccCccchhHHHhhcCceeeEEecCCC-------cEEeeecce
Confidence 7 4433 3457799999999999 889998864
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.53 E-value=1.4e-12 Score=143.54 Aligned_cols=226 Identities=12% Similarity=0.196 Sum_probs=164.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
|..++|.| ||..++.+..+ .+.+||...|..+.+++ +|.+.|.+|+|+ .+|..++||+.|..|.+|.-.-.....
T Consensus 15 i~d~afkP-DGsqL~lAAg~-rlliyD~ndG~llqtLK--gHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 15 INDIAFKP-DGTQLILAAGS-RLLVYDTSDGTLLQPLK--GHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred hheeEECC-CCceEEEecCC-EEEEEeCCCcccccccc--cccceEEEEEEc-cCCceeccCCCceeEEEecccccceee
Confidence 77899999 77777776544 69999999999999998 999999999998 899999999999999999876422110
Q ss_pred ccccc----------------------------CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 004969 536 RGMHY----------------------------GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV 587 (721)
Q Consensus 536 ~~~~~----------------------------~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~ 587 (721)
-.+.. ...+........+.+.+|..+|++++.|-.+|+|.+-+-.....+..
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 00000 00001111223578899999999999999999999987553333332
Q ss_pred -EccccCCCeEEEEEcCCCC----cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 588 -FADMHKEHINVVKFSNHSP----SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMF 662 (721)
Q Consensus 588 -l~~~h~~~V~sI~fsPdg~----~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~ 662 (721)
-.|+..++|.+|+|+|..+ .++++.....++.+|.+......... .-...+.++.+-++|.|++.|+.|+.++
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceE
Confidence 2345788999999999752 35666666677777766543211111 1223455889999999999999999999
Q ss_pred EEEcCCC---cccccccCeEEEEECCCCC
Q 004969 663 VQSLRGD---PFRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 663 VWDl~g~---~l~~~~~~V~~v~fsP~~~ 688 (721)
+|--.|- ++..+...|..++.+|+++
T Consensus 248 ~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 248 LFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EEeecCeEEeeccccceeEEEEEEccCCc
Confidence 9987653 3445677999999999993
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-13 Score=146.43 Aligned_cols=237 Identities=14% Similarity=0.230 Sum_probs=170.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
+.++.|+..+.-.+++.+.|..|++|.-... +....-...+ ..-.||+.. ....++++||..++|+|||++. +.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~-kl 112 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACA-SQSLYEISGGQSGCVKIWDLRA-KL 112 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhh-hcceeeeccCcCceeeehhhHH-HH
Confidence 6778888832222333445778889875422 2221111112 233444433 3347999999999999999985 33
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
..+.+. .|.+.|+++.++-.+.+|++++..|.|.|..+.++.....|.......|.-+.|+|....+|.+++
T Consensus 113 ~hr~lk--------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 113 IHRFLK--------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred Hhhhcc--------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence 222222 355678999999999999999999999999999999888888534556778999999877888999
Q ss_pred CCCcEEEEECCCCCceeEEE-ecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCcc---cccccCeEEEEECCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYT-ASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDPF---RDFNMSILAAYTRPSS 687 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~-~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l---~~~~~~V~~v~fsP~~ 687 (721)
.+|.|.+||+..... .+. ...|..+. .++|+|.. ..|++.+.|..|++||++.+.. .....+...++|.|+|
T Consensus 185 d~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG 262 (673)
T ss_pred cCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc
Confidence 999999999987643 332 34566666 79999955 5677889999999999984432 2235688899999999
Q ss_pred CcccccccEEEEecCCCccccCCccc
Q 004969 688 KSEIVKVNLLASTDHCDKECSHGQHS 713 (721)
Q Consensus 688 ~~~~v~v~lLASgs~~~ke~s~~~~~ 713 (721)
.+|+.|..-.+.-.++.+.
T Consensus 263 -------~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 263 -------TYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred -------eEEEeecCCceEEEEeccc
Confidence 8888888775655555554
No 174
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.51 E-value=4.4e-13 Score=148.56 Aligned_cols=225 Identities=16% Similarity=0.231 Sum_probs=164.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEee-----------------------------------cCCCCCCeEEEEEeeCCC
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIP-----------------------------------SFGAMNSVLGLCWLKKYP 511 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~-----------------------------------~~~H~~~V~sl~fsp~d~ 511 (721)
.-+++++.||+|++|++..+..-..+. ..+....+.+++.+ +++
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~g 471 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDG 471 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCc
Confidence 448899999999999987532111100 01334578999998 799
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC-cEEEE
Q 004969 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSG-RRLQV 587 (721)
Q Consensus 512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~-~~v~~ 587 (721)
.+|++|..-|+++||++..-... ...-.|...|.|+.++.. ...+++++.|.-|++||+... .++++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~---------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYT---------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred ceecccCccCceEEEEehhhhhh---------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence 99999999999999999874331 112236677899988654 356778888999999998753 34455
Q ss_pred EccccCCCeEEEEEc-------------------------------------------------CCCCcEEEEEECCCcE
Q 004969 588 FADMHKEHINVVKFS-------------------------------------------------NHSPSIFATSSFDQDV 618 (721)
Q Consensus 588 l~~~h~~~V~sI~fs-------------------------------------------------Pdg~~lLaSgs~DgtI 618 (721)
+.+ |...|++|.|. |.. .++++++.|+.|
T Consensus 543 ld~-HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrni 620 (1080)
T KOG1408|consen 543 LDG-HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNI 620 (1080)
T ss_pred hcc-cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc-ceEEEEecccce
Confidence 554 66666665554 333 468999999999
Q ss_pred EEEECCCCCceeEEEec-CCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCCcccc
Q 004969 619 KLWDLRQKPIQPCYTAS-SSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSKSEIV 692 (721)
Q Consensus 619 rIWDlrs~~~~~~~~~~-~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v 692 (721)
+|||+.+++....++.. +|.+ .+.+...|.|-|+++...|.++.++|.- |. ...+|...|..+.|.++.
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC----- 695 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC----- 695 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-----
Confidence 99999999876666543 3323 4589999999999999999999999986 33 345677789999999998
Q ss_pred cccEEEEecCCCccccCCcc
Q 004969 693 KVNLLASTDHCDKECSHGQH 712 (721)
Q Consensus 693 ~v~lLASgs~~~ke~s~~~~ 712 (721)
.-|.+.++. ++.+-++
T Consensus 696 --kHlISvsgD--gCIFvW~ 711 (1080)
T KOG1408|consen 696 --KHLISVSGD--GCIFVWK 711 (1080)
T ss_pred --hhheeecCC--ceEEEEE
Confidence 566666665 4555443
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=7.5e-13 Score=134.11 Aligned_cols=201 Identities=15% Similarity=0.230 Sum_probs=150.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-EEEeec---CCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-VSYIPS---FGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~---~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~ 529 (721)
+|.|+.|.| ++..+++-. |..|.+|+++.+.. +..+.. .+|....++-+|+| .+++.+++ ..|+++..||++
T Consensus 125 ~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R 201 (370)
T KOG1007|consen 125 KINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR 201 (370)
T ss_pred ceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc
Confidence 589999999 888777765 88899999987765 444432 24566788889998 45666655 567899999999
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
+..+... +.-.|...|..+.|+|..++++ ++|+||.|++||.|. ..+++++.+ |..+|.+|.|+|....
T Consensus 202 T~~~~~s--------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 202 TMKKNNS--------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQ 272 (370)
T ss_pred chhhhcc--------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccce
Confidence 8665222 2223334579999999877654 566789999999996 567888887 9999999999998878
Q ss_pred EEEEEECCCcEEEEECCCCCc----------------------ee-----EEEecCCCCeE-EEEEecCCCEE-EEEeCC
Q 004969 608 IFATSSFDQDVKLWDLRQKPI----------------------QP-----CYTASSSKGNV-MVCFSPDDHYL-LGKGSG 658 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~----------------------~~-----~~~~~~~~~~v-sl~fSpdg~~L-asgs~D 658 (721)
++++|+.|..|.+|-..+-.. .+ +.++..|...+ +++||.-..++ ++-+.|
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 999999999999997643110 01 12344566667 89999866665 566899
Q ss_pred CcEEEEEcC
Q 004969 659 TSMFVQSLR 667 (721)
Q Consensus 659 g~I~VWDl~ 667 (721)
|.+.|=.+.
T Consensus 353 GRviIs~V~ 361 (370)
T KOG1007|consen 353 GRVIISSVP 361 (370)
T ss_pred ceEEeecCC
Confidence 999887765
No 176
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.50 E-value=1.7e-12 Score=144.19 Aligned_cols=227 Identities=12% Similarity=0.167 Sum_probs=171.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH- 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~- 530 (721)
.|+.++|+| .|.++++.+.|-+-|++-.- |+. -+.+ +.+-|...++|++|. +....+++|.+...+|+|+...
T Consensus 363 ~V~dv~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~ 439 (764)
T KOG1063|consen 363 GVKDVDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFV-NEDLQFVSGADEKVLRVFEAPKS 439 (764)
T ss_pred cceeeeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehc-cCCceeeecccceeeeeecCcHH
Confidence 489999999 89999999999999998765 221 1111 223566789999997 4477899999999999998762
Q ss_pred ---------C----------------------CCccc--ccccCc--------------------------------c-e
Q 004969 531 ---------M----------------------PPSIR--GMHYGA--------------------------------G-T 544 (721)
Q Consensus 531 ---------~----------------------~~~~~--~~~~~~--------------------------------~-~ 544 (721)
+ +.... ...+.. . .
T Consensus 440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~ 519 (764)
T KOG1063|consen 440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH 519 (764)
T ss_pred HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence 0 00000 000000 0 0
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr 619 (721)
--+.|...|++++.+|+++.++++.. -..|++|+..+...++.+.+ |.-.|+.++|+|+| ++|++.|.|+++.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg-~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDG-RYLLSVSRDRTVS 597 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCC-cEEEEeecCceEE
Confidence 01225567999999999999999874 35699999999988888987 99999999999999 8999999999999
Q ss_pred EEECCCCCceeEE---EecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC---c-----ccccccCeEEEEECCCC
Q 004969 620 LWDLRQKPIQPCY---TASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD---P-----FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 620 IWDlrs~~~~~~~---~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~---~-----l~~~~~~V~~v~fsP~~ 687 (721)
+|...... ...+ ....|..++ .+.|+|++.+++|+|.|.+|+||..... . ...+...|.++++.|.-
T Consensus 598 l~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 598 LYEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred eeeeeccc-chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence 99985432 1122 256788888 9999999999999999999999998743 1 22346789999998754
No 177
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.4e-12 Score=132.79 Aligned_cols=202 Identities=17% Similarity=0.240 Sum_probs=144.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
++.++||+ .-.-+|++..|-.|++||-.. ++...++. .....|++++|-|..+..|+.|+.. -|.+|.....-..-
T Consensus 101 lr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks-~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKS-VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred eeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecc-hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 67899999 666788899999999999876 55555653 3357899999998777877777765 68899887533211
Q ss_pred c----ccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 536 R----GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 536 ~----~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
. .-..+........+.+|+++.|++++..+++++. |..|.|||..++..+.-... ..+.++-+.|+||| .++.
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdg-d~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDG-DVLF 254 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCC-CEEE
Confidence 1 1122333444555678999999999999999985 78899999999887655532 56778899999999 7888
Q ss_pred EEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 611 TSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
++.-|+..++|.... ....+-. -+.......+|+|+|++|+-+. .|.-.+|.+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~-sgsp~lysl 308 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL 308 (445)
T ss_pred Eecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence 899999999996543 3222221 2222333889999999887655 233334443
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=3e-11 Score=128.93 Aligned_cols=211 Identities=24% Similarity=0.399 Sum_probs=159.0
Q ss_pred eEEEEE-eCCCCC-EEEEEEC-CCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCC
Q 004969 456 PRQFEY-HPSISC-LMVFGTL-DGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRH 530 (721)
Q Consensus 456 V~~laf-sP~dg~-~LasGs~-DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~ 530 (721)
+..+.+ ++ ++. .++..+. |+.+++|+... ......+. .|...|..++|+ +++..+++++. |+.+++|++..
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 112 VSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred eeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEEEEe--cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCC
Confidence 555556 77 555 5555444 99999999987 66666666 888999999998 56668888885 99999999997
Q ss_pred CCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEE-EEccccCCCeEEEEEcCCCCc
Q 004969 531 MPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQ-VFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~-~l~~~h~~~V~sI~fsPdg~~ 607 (721)
+.. ...+ .|...|.+++|+|++..++++ +.|+.|++||...+..+. .+.+ |...+ ...|+|++ .
T Consensus 188 ~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~ 254 (466)
T COG2319 188 GKP----------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG-HSDSV-VSSFSPDG-S 254 (466)
T ss_pred Cce----------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC-CCcce-eEeECCCC-C
Confidence 332 1111 256789999999888744444 789999999999888887 5665 77775 44899998 7
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----cc--ccccCeEE
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FR--DFNMSILA 680 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~--~~~~~V~~ 680 (721)
.+++++.|+.+++||.+.... ......+|...+ ++.|+|++..+++++.|+.+.+|+..... .. .|...+..
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333 (466)
T ss_pred EEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence 888999999999999997654 122224555555 78999999999989989889999887332 22 34445788
Q ss_pred EEEC
Q 004969 681 AYTR 684 (721)
Q Consensus 681 v~fs 684 (721)
+.|.
T Consensus 334 ~~~~ 337 (466)
T COG2319 334 LSFS 337 (466)
T ss_pred EEEC
Confidence 8883
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=7.7e-14 Score=156.88 Aligned_cols=194 Identities=13% Similarity=0.200 Sum_probs=158.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|+|..|.. .|.++++|++|..|+||..+++.+....+ ||.+.|+.++.+ .++.+++++|.|..|++|.+..+.+.
T Consensus 192 aVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r--Ghs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 192 AVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR--GHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred heeeeeecc-ccceEeecCccceeeeeeccchhhhccCC--CCccccchhccc-hhhhhhhhcccCceEEEEecCCCchH
Confidence 699999999 99999999999999999999999999888 999999999986 67788999999999999999987652
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC----------------------------------
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---------------------------------- 580 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---------------------------------- 580 (721)
.+.+.|.+.|++++|+|.. +++.||++++||.+
T Consensus 268 ---------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 268 ---------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred ---------HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 2344566677888887754 56677888888776
Q ss_pred -------------------------------------------------CCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 581 -------------------------------------------------SGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 581 -------------------------------------------------s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
+|...+.+. +|...++.+.++|.++.+..+
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhh
Confidence 111111222 367788999999999888899
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
++.||...|||+-.+.....+. .+|...+..+||+||..++....-|.++|....
T Consensus 414 ag~dgst~iwdi~eg~pik~y~-~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYF-IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ccCCCceEeeecccCCcceeee-cccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 9999999999999886665555 557777788999999999988888899888654
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=141.10 Aligned_cols=211 Identities=15% Similarity=0.225 Sum_probs=152.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC-CEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~-~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
-|.|++|+. +|.+|++|++|-.+.|||.-..+.++.+.. ||...|.++.|.|..+ ..++||..|..|+++|+...+.
T Consensus 52 CVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 52 CVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred eecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 389999999 999999999999999999988888887764 9999999999998655 4778899999999999986332
Q ss_pred cccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcE-------EEEEccc--cCCCeEEEEEc
Q 004969 534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRR-------LQVFADM--HKEHINVVKFS 602 (721)
Q Consensus 534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~-------v~~l~~~--h~~~V~sI~fs 602 (721)
.-...........+ .|...|..++..|.+ ..+.+++.||+|+-+|++.... ...+..- .--...++.++
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltis 209 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTIS 209 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeec
Confidence 11111111111112 244667788888888 6788889999999999996321 1111110 12346789999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCC-----------ce-----eEEE-ecCCC----C--------eEEEEEecCCCEEE
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKP-----------IQ-----PCYT-ASSSK----G--------NVMVCFSPDDHYLL 653 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~-----------~~-----~~~~-~~~~~----~--------~vsl~fSpdg~~La 653 (721)
|..+++|++|+.|...++||.|... +- .+.. .++|. + ..-++|+|+|.-|+
T Consensus 210 p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 210 PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELL 289 (758)
T ss_pred CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEE
Confidence 9999999999999999999954310 10 0111 11221 1 12478999999888
Q ss_pred EEeCCCcEEEEEcC
Q 004969 654 GKGSGTSMFVQSLR 667 (721)
Q Consensus 654 sgs~Dg~I~VWDl~ 667 (721)
..-....|+++|+.
T Consensus 290 vs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVN 303 (758)
T ss_pred EeeCCeEEEEEeec
Confidence 77767799999997
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2e-11 Score=127.74 Aligned_cols=193 Identities=18% Similarity=0.281 Sum_probs=149.7
Q ss_pred CeEEEEEeCCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|--+-|+. .++|..+.+ +.+++++.+.+..+..+.. ..+|.+|.++ .+.|+++-.+ .|.|||++..+
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmN---r~RLvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEc---cceEEEEEcc-cEEEEecccce
Confidence 466667776 666666554 4589999998888887753 4689999985 4567776665 49999999976
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
..-. +.. ...+...+.+++.++.+.+++.-+. .|.|.+||..+-+++..+.. |.+.+.+++|+|+| .++|
T Consensus 118 lLhT-I~t-----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G-~llA 189 (391)
T KOG2110|consen 118 LLHT-IET-----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDG-TLLA 189 (391)
T ss_pred eehh-hhc-----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe-cCCceeEEEECCCC-CEEE
Confidence 5211 110 1123344677777777778887653 69999999999999999995 99999999999999 8999
Q ss_pred EEECCCc-EEEEECCCCCceeEEEecCCCCeE---EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 611 TSSFDQD-VKLWDLRQKPIQPCYTASSSKGNV---MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 611 Sgs~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v---sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|+|..|+ ||||.+.+++. ++++......+ +++|+|++++|++.+..++|+||.+.
T Consensus 190 TASeKGTVIRVf~v~~G~k--l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQK--LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EeccCceEEEEEEcCCccE--eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9999998 69999999844 66665444443 89999999999999999999999987
No 182
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.7e-12 Score=130.45 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=123.8
Q ss_pred eEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (721)
Q Consensus 501 V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~ 580 (721)
..++.|+ +.|.+|++|..||.|-|||+.+... ....-.|-.+|++++|+++|..+++++.|..|.+||+.
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~i---------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRI---------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEccccch---------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 6789998 7899999999999999999998542 11222355789999999999999999999999999999
Q ss_pred CCcEEEEEccccCCCeEEEEEcC-----------------------------------------------CCCcEEEEEE
Q 004969 581 SGRRLQVFADMHKEHINVVKFSN-----------------------------------------------HSPSIFATSS 613 (721)
Q Consensus 581 s~~~v~~l~~~h~~~V~sI~fsP-----------------------------------------------dg~~lLaSgs 613 (721)
.|.+++.+. ..++|....|+| .| +++++|.
T Consensus 96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGt 172 (405)
T KOG1273|consen 96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGT 172 (405)
T ss_pred CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEec
Confidence 998887665 444444444433 34 6899999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
..|.+.++|..+.++...+.......+-.+.++..|++|+..+.|..|++|+++
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 999999999999877655554432333379999999999999999999999986
No 183
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=3e-12 Score=142.34 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=173.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
-....|+| +++.+++-+..|-.++|..+. .......-..||.+.|.+|+|. +.+++|+|+|.|-|-|++---..+..
T Consensus 319 F~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 319 FWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred eeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEeccccceeeecccccccc
Confidence 46788999 889999999999999999432 2222222234999999999998 78999999999999999877643332
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------C----------------------
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----------G---------------------- 582 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s----------~---------------------- 582 (721)
. |.-...-.|...++|+++-+..-.|++|+..+.+|+|+... +
T Consensus 397 w-----HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 397 W-----HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred e-----eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 1 11111112445688998866666777777788899997531 0
Q ss_pred cEE--------------------------------------------EEEccccCCCeEEEEEcCCCCcEEEEEECCC--
Q 004969 583 RRL--------------------------------------------QVFADMHKEHINVVKFSNHSPSIFATSSFDQ-- 616 (721)
Q Consensus 583 ~~v--------------------------------------------~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg-- 616 (721)
+.. +++.| |...|++++.+|+| +++|+++...
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG-HGyEv~~l~~s~~g-nliASaCKS~~~ 549 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG-HGYEVYALAISPTG-NLIASACKSSLK 549 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc-CceeEEEEEecCCC-CEEeehhhhCCc
Confidence 000 02224 88899999999999 8999987643
Q ss_pred ---cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--------cccccccCeEEEEEC
Q 004969 617 ---DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--------PFRDFNMSILAAYTR 684 (721)
Q Consensus 617 ---tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--------~l~~~~~~V~~v~fs 684 (721)
.|++|+..+... ...+.+|.-.+ .++|||||+||++.+.|.++.+|..... ..+.|.--|..+.|+
T Consensus 550 ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred cceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence 599999988744 44677787777 8999999999999999999999987521 145677789999999
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
|++ ..+||+|+.
T Consensus 628 pde-------~~FaTaSRD 639 (764)
T KOG1063|consen 628 PDE-------KYFATASRD 639 (764)
T ss_pred ccc-------ceeEEecCC
Confidence 999 779999987
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=6.4e-11 Score=128.32 Aligned_cols=221 Identities=11% Similarity=0.125 Sum_probs=142.2
Q ss_pred eEEEEEeCCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCC
Q 004969 456 PRQFEYHPSISCLMVFGT-LDGEIVVVNHE-NENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRH 530 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs-~DG~I~IWdl~-tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~ 530 (721)
+..++++| ++++|++++ .++.|.+|++. +|.. +.... ..+....++|+ ++++++++++ .++.|.+|++.+
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECC
Confidence 56789999 888876664 58899999997 3433 22222 23356789998 6777777766 489999999974
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEE-----EEccccCCCeEEEEEcCC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQ-----VFADMHKEHINVVKFSNH 604 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~-----~l~~~h~~~V~sI~fsPd 604 (721)
....... .....+......++++|+++.+++++. ++.|.+||+.+...+. ............++|+|+
T Consensus 112 ~g~~~~~------~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAP------IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred CCCCCCc------eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 3211110 111122234577889999999987774 6999999998633221 111112345678999999
Q ss_pred CCcEEEEEE-CCCcEEEEECCC--CCceeEEEecCC-------CCeEEEEEecCCCEEEEEeC-CCcEEEEEcC--CCcc
Q 004969 605 SPSIFATSS-FDQDVKLWDLRQ--KPIQPCYTASSS-------KGNVMVCFSPDDHYLLGKGS-GTSMFVQSLR--GDPF 671 (721)
Q Consensus 605 g~~lLaSgs-~DgtIrIWDlrs--~~~~~~~~~~~~-------~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~--g~~l 671 (721)
| ++++++. .+++|.+||+.. +....+..+... .....+.++|+|++++++.. ++.|.+|++. +..+
T Consensus 186 g-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 186 Q-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred C-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 9 5665555 499999999973 333223222211 11225889999999998854 7899999985 2221
Q ss_pred --ccc---ccCeEEEEECCCCC
Q 004969 672 --RDF---NMSILAAYTRPSSK 688 (721)
Q Consensus 672 --~~~---~~~V~~v~fsP~~~ 688 (721)
..+ ......+.++|+++
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred EEeEEEeccccCCceEECCCCC
Confidence 111 12345689999994
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=9.9e-12 Score=127.78 Aligned_cols=229 Identities=17% Similarity=0.229 Sum_probs=164.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------eE-----EEEeecCCCCCCeEEEEEee------CCCCEEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------NI-----VSYIPSFGAMNSVLGLCWLK------KYPSKLIAG 517 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------~~-----i~~l~~~~H~~~V~sl~fsp------~d~~~LaSg 517 (721)
.....|+| ||.-|++-+.|..+.+|++... .. ...++. -....|..-+|-+ |+..++++.
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence 45688999 9999999999999999998521 10 111111 1234577777753 566799999
Q ss_pred eCCCeEEEEEcCCCCCcccccccCcceeEeccC---CCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCcEE--EE-Ec-
Q 004969 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDI-NSGRRL--QV-FA- 589 (721)
Q Consensus 518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~sp~~~~lls~g~Dg~IrlWDl-~s~~~v--~~-l~- 589 (721)
+.|.-|++||.-+++.. .....+.|. ....+++|+|+|..|++| ....|+++|+ |.|+.- .. +.
T Consensus 130 sr~~PIh~wdaftG~lr-------aSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLR-------ASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cccCceeeeeccccccc-------cchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999998762 111122222 235789999999998865 5688999999 555422 11 11
Q ss_pred --cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeC-CCcEEEEE
Q 004969 590 --DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS-GTSMFVQS 665 (721)
Q Consensus 590 --~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~-Dg~I~VWD 665 (721)
.+..+-+.+++|+|.....++.|+...++-||.-..+ .+++.+.+|.+.| -+.|.++|+.|++|.. |..|-.||
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 1146789999999998779999999999888877766 4467777887777 8999999999999875 67899999
Q ss_pred cC--CCccc---cccc-CeEEEEE--CCCCCcccccccEEEEecCC
Q 004969 666 LR--GDPFR---DFNM-SILAAYT--RPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 666 l~--g~~l~---~~~~-~V~~v~f--sP~~~~~~v~v~lLASgs~~ 703 (721)
+| +.++. .|.. .-..+.| .|++ ++||+|+..
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~-------~~LasG~td 318 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKG-------EILASGDTD 318 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCC-------ceeeccCCC
Confidence 98 44432 2322 3344555 5777 899999665
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2e-12 Score=137.13 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=146.3
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
.+++|++ +|..+++|+.||++|||++.....+.... .|.+.|.++.|+ +++.+|++-+.| ..+||+.+++.. ++
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~--~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~-~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEI--AHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAA-LA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhH--hhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCch-hh
Confidence 5799999 99999999999999999987766655554 788999999998 799999999999 999999999743 11
Q ss_pred ccccCcceeEeccCCCeEEEEEecCC---CEEEEEe--CCCcEEEEECCCCcE-----EEEEccccCCCeEEEEEcCCCC
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLASG--YSKNIALYDINSGRR-----LQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~g--~Dg~IrlWDl~s~~~-----v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
.... +........+.|..++ ..++++. ..+.|+.||+...+. .++... ....|++++.+++|
T Consensus 222 ~~t~------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dG- 293 (398)
T KOG0771|consen 222 RKTP------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDG- 293 (398)
T ss_pred hcCC------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCC-
Confidence 1111 1122234555565444 3333333 356788877764322 111111 34579999999999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++++.|+.||.|-|++..+-+.. .+.-+.|...+ .+.|+||.+++++.+.+..+.|..+..
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 89999999999999999886443 23345666766 899999999999999999999988774
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=1.3e-11 Score=127.06 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=159.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC-C
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR-H 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~-~ 530 (721)
.|+|.+|++ +...+|.+.....|.||.....+ ..+++. .|...|++|+|. +..+.|++|+.|..-.+|... .
T Consensus 12 pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls--~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 12 PITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS--EHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehh--hhCcceeEEeec-CCCCceeEccCCCCccccccCCC
Confidence 589999999 99999999999999999987655 445555 899999999998 677899999999999999984 3
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCc
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
+.- ....+...+...+++|.|+|..+.|++|+....|.+|-.+....= +.++..+.+.|.+++|+|++ -
T Consensus 88 ~~W-------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 88 GTW-------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred Cee-------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-c
Confidence 322 223455667788999999999999999999999999988754321 12222377889999999998 7
Q ss_pred EEEEEECCCcEEEEECC-----CCC-------ce----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 608 IFATSSFDQDVKLWDLR-----QKP-------IQ----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlr-----s~~-------~~----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++++|+.|+.+|||..- ... .. .+.+.....+++ .+.|+|+|..|+-.+.|..+.+=|-.+
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99999999999999642 110 00 112233445666 899999999999999999999988764
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=1.9e-11 Score=139.06 Aligned_cols=214 Identities=19% Similarity=0.202 Sum_probs=153.3
Q ss_pred CCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969 475 DGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (721)
Q Consensus 475 DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V 553 (721)
++.+.||++... .....+ .-...|++++|+|.++.+++.|..+|.|-+||++.+.... ........-.|..++
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEPV 294 (555)
T ss_pred CceEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---CcccccccccCCcCe
Confidence 358999999866 333344 3357899999999999999999999999999999866522 111223334567788
Q ss_pred EEEEEecCCC--EEEEEeCCCcEEEEECCCCcE----------E-----------------------------------E
Q 004969 554 TSVHVNSMDE--LFLASGYSKNIALYDINSGRR----------L-----------------------------------Q 586 (721)
Q Consensus 554 ~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~----------v-----------------------------------~ 586 (721)
+.+.|...-. .|++++.||.|..|+++.-.. . +
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 8888865544 499999999999998763110 0 0
Q ss_pred --------EE----c-----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC
Q 004969 587 --------VF----A-----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD 648 (721)
Q Consensus 587 --------~l----~-----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd 648 (721)
.. + ..|.++|+++.++|-++.+|++++ |.+++||..... ..|++.+..+...+ .++|||.
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-ASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-CCcchhhhhccceeeeeEEcCc
Confidence 00 0 126778999999999976777766 999999998732 24566666666645 8999996
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCccccc------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 649 D-HYLLGKGSGTSMFVQSLRGDPFRDF------NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 649 g-~~Lasgs~Dg~I~VWDl~g~~l~~~------~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. ..++++..||.+.+||+..+...+. ......+.|++.+ .+||.|+..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-------~~lavGd~~ 507 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-------KLLAVGDAN 507 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-------cEEEEecCC
Confidence 6 4667778899999999984432222 2345557788888 889998887
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.4e-11 Score=138.71 Aligned_cols=209 Identities=13% Similarity=0.073 Sum_probs=138.7
Q ss_pred CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEE--Ec
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY--DI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIW--Di 528 (721)
.+.+..|+| +++.++.++.+ ..|++||+.+++........+| ...++|+ ++++.|+.++ .+|.+.|| |+
T Consensus 205 ~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 205 PLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS-PDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC-CCCCEEEEEEecCCcEEEEEEEC
Confidence 478899999 89989887654 4799999988765333222233 3468998 6888777654 68877766 44
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
.++.. ..+ ..+...+....|+|++..++.++ .++...||++... .....+ . +.. ....|+|+|
T Consensus 280 ~~~~~--~~l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~--~~~~~SpDG- 344 (429)
T PRK01742 280 NGGTP--SQL--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG--YSAQISADG- 344 (429)
T ss_pred CCCCe--Eee--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC--CCccCCCCC-
Confidence 44322 111 11233467899999999888766 4788888876532 222233 2 433 457899999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc---CCCc---ccccccCeEE
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL---RGDP---FRDFNMSILA 680 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl---~g~~---l~~~~~~V~~ 680 (721)
..++.++.++ +.+||+.++....+. .. ....++.|+|||++|+.++.++.+.+|.+ .|.. +..+.+.+..
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~ 420 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLS--ST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF 420 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEec--CC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC
Confidence 6777776665 555999887643222 11 11225789999999999998998877764 4554 3344566777
Q ss_pred EEECCCC
Q 004969 681 AYTRPSS 687 (721)
Q Consensus 681 v~fsP~~ 687 (721)
.+|||-.
T Consensus 421 p~wsp~~ 427 (429)
T PRK01742 421 PAWSPYL 427 (429)
T ss_pred cccCCCC
Confidence 8888853
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.39 E-value=5.7e-12 Score=136.34 Aligned_cols=202 Identities=14% Similarity=0.211 Sum_probs=153.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
...++.++.||.+.|.+- .|+..+.+. +|.++|.+-.|+ ++|.-|+++|.||.|++|.-.+.-. ..
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~--AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGMLR----------St 140 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSIS--AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGMLR----------ST 140 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhh--hhhhhhhhcccC-CCCceeeeecCCceEEEEeccchHH----------HH
Confidence 356788889999999884 466666666 899999999998 7999999999999999999776322 11
Q ss_pred EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
..+...+|.|++|.|+...++.+.. +.+.|=-+.....+...+. |.+-|.++.|+|.. +++++|+.|-..+|||-..
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkA-HDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRA-HDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEec-cCcEEEEeecCccc-cceeecCCceeEEeecccC
Confidence 2234467999999999888777653 5677777776666666775 99999999999998 8999999999999999875
Q ss_pred CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+++.-..|..++ +++|.|+ ..++.++ -+++++=. +-.++|..++|+|+| ..++.|...
T Consensus 218 ---~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~nt~R~~~-------p~~GSifnlsWS~DG-------TQ~a~gt~~ 277 (737)
T KOG1524|consen 218 ---ANLFTSAAEEYAITSVAFNPE-KDYLLWS-YNTARFSS-------PRVGSIFNLSWSADG-------TQATCGTST 277 (737)
T ss_pred ---cccccCChhccceeeeeeccc-cceeeee-eeeeeecC-------CCccceEEEEEcCCC-------ceeeccccC
Confidence 3366666666666 9999999 4444454 34444211 224689999999999 555555443
No 191
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5e-12 Score=138.45 Aligned_cols=197 Identities=15% Similarity=0.255 Sum_probs=153.4
Q ss_pred CccCeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 452 RSFRPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
+...|+++.||. .|.+|++...+ ..|.|.++........++ ...+.|.++.|+|. ..+|+.++. ..|+|||+
T Consensus 520 ~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL 594 (733)
T KOG0650|consen 520 HPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDL 594 (733)
T ss_pred cCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchh--hcCCceeEEEecCC-CceEEEEec-cceEEEeh
Confidence 334689999999 99999997664 478888988766554443 44578999999954 455555554 48999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
..... ++.+... ...|.++++||.|+.++.++.|+.+..+|+.- .++.+++.. |...+++|+|++.- .
T Consensus 595 ~kqel-vKkL~tg--------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ry-P 663 (733)
T KOG0650|consen 595 SKQEL-VKKLLTG--------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRY-P 663 (733)
T ss_pred hHHHH-HHHHhcC--------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhhcccc-c
Confidence 87433 2222211 13468899999999999999999999999985 466777776 99999999999988 5
Q ss_pred EEEEEECCCcEEEEEC-------CCCCceeEEEecCCCCe----E-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 608 IFATSSFDQDVKLWDL-------RQKPIQPCYTASSSKGN----V-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 608 lLaSgs~DgtIrIWDl-------rs~~~~~~~~~~~~~~~----v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
+|++|+.||++.||-- .+....++..+.+|... + .+.|+|...||++++.||+|++|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999999853 23345677777887655 3 67899999999999999999998
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.39 E-value=2.3e-12 Score=137.63 Aligned_cols=243 Identities=17% Similarity=0.205 Sum_probs=175.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------------------------------------CCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------------------------------------GAM 498 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------------------------------------~H~ 498 (721)
-+..+.|+. +|.+++.|+..|.|.-+|+.+++....+... .-.
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 367788888 8999999999999999998887766554321 012
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
..|..+.|. +.--+|++++..|.++--|+.+|+.. ..+. ...+.+..++-+|-+..+-+|...|+|.+|.
T Consensus 210 ~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklV-a~~~--------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 210 IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLV-ASIR--------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred Cchhhhccc-chhheeeecccCCceEEEeechhhhh-HHHH--------ccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 356667776 44567888888899998899887652 1111 1224567778888888899999999999999
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
..+.+++..+.. |.++|.+|++.+.| ++++|.+.|..++|||+|+-.. ..+.........+++|..| +++.+..
T Consensus 280 P~skePLvKiLc-H~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~t~~tp~~a~~ls~Sqkg--lLA~~~G 353 (545)
T KOG1272|consen 280 PNSKEPLVKILC-HRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LHTYRTPHPASNLSLSQKG--LLALSYG 353 (545)
T ss_pred CCCcchHHHHHh-cCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cceeecCCCcccccccccc--ceeeecC
Confidence 999999888776 99999999999999 8999999999999999998642 2222222223357777555 4455667
Q ss_pred CcEEEEEc--CCC-----ccccc--ccCeEEEEECCCCCcccccc-----cEEEEecCCCccccCCcccC
Q 004969 659 TSMFVQSL--RGD-----PFRDF--NMSILAAYTRPSSKSEIVKV-----NLLASTDHCDKECSHGQHSR 714 (721)
Q Consensus 659 g~I~VWDl--~g~-----~l~~~--~~~V~~v~fsP~~~~~~v~v-----~lLASgs~~~ke~s~~~~~~ 714 (721)
..+.||.= .+. ++..| .+.|..+.|.|-..+.-++. .+|+-|++..-.++...+++
T Consensus 354 ~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf 423 (545)
T KOG1272|consen 354 DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF 423 (545)
T ss_pred CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc
Confidence 78999962 222 23333 46899999999774333322 78999998855555555543
No 193
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.7e-11 Score=120.58 Aligned_cols=138 Identities=19% Similarity=0.366 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINV 598 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s 598 (721)
|...+|-++.... ....+.+...++|.+++|+|++..|++.. .++.|.+||++ ++.+..+. ...++.
T Consensus 37 ~~~~l~~~~~~~~-------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~ 105 (194)
T PF08662_consen 37 GEFELFYLNEKNI-------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNT 105 (194)
T ss_pred eeEEEEEEecCCC-------ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceE
Confidence 3455666544322 22344455556799999999999987664 46799999997 77777764 467789
Q ss_pred EEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004969 599 VKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------GTSMFVQSLRGD 669 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------Dg~I~VWDl~g~ 669 (721)
|.|+|+| +++++|+.+ |.|.+||+++.+. +... .+...+.++|+|||+++++++. |+.++||+..|+
T Consensus 106 i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 106 ISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK--ISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEECCCC-CEEEEEEccCCCcEEEEEECCCCEE--eecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 9999999 788887654 6799999997643 4443 3445668999999999998864 788999999987
Q ss_pred cccc
Q 004969 670 PFRD 673 (721)
Q Consensus 670 ~l~~ 673 (721)
.+..
T Consensus 182 ~l~~ 185 (194)
T PF08662_consen 182 LLYK 185 (194)
T ss_pred EeEe
Confidence 6543
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=9.9e-11 Score=122.55 Aligned_cols=228 Identities=19% Similarity=0.219 Sum_probs=162.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~ 533 (721)
+..+.|+. +...|..|+.|| -++|+.+.-....... ...-.|--+-|+ ..++|..+.+. .+++.+++....
T Consensus 8 i~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 8 INFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred eeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 55666887 889999999999 6888876433211111 112345555554 45666555543 488888876332
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc--cCCCeEEEEEcCCCCcEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM--HKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~--h~~~V~sI~fsPdg~~lLaS 611 (721)
........+|.+|.++ -+.++++-.+. |+|||+++.+.++++... +...+.++++++.+ .++|-
T Consensus 81 ----------ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAy 146 (391)
T KOG2110|consen 81 ----------ICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAY 146 (391)
T ss_pred ----------EEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEe
Confidence 3334445678999984 45666666544 999999999999888742 55567777777766 46654
Q ss_pred E-E-CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE-EEEEcC-CCcccccc-----cCeEEE
Q 004969 612 S-S-FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM-FVQSLR-GDPFRDFN-----MSILAA 681 (721)
Q Consensus 612 g-s-~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I-~VWDl~-g~~l~~~~-----~~V~~v 681 (721)
- + ..|.|.+||+.+- +++..+..|.+.+ +++|+++|.+|||++..|+| +|+.+. |+.+..|. ..|.++
T Consensus 147 p~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred cCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence 3 2 3588999999875 5577778999999 89999999999999999975 999997 66666662 368889
Q ss_pred EECCCCCcccccccEEEEecCCCccccCCccc
Q 004969 682 YTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 713 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASgs~~~ke~s~~~~~ 713 (721)
+|||++ ++|+..|.+...+.+.+..
T Consensus 225 ~Fs~ds-------~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 225 SFSPDS-------QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EECCCC-------CeEEEecCCCeEEEEEecc
Confidence 999999 8888888875665555544
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.4e-11 Score=128.89 Aligned_cols=189 Identities=12% Similarity=0.145 Sum_probs=139.2
Q ss_pred CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcE
Q 004969 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574 (721)
Q Consensus 495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~I 574 (721)
.+|.+.|.++.|+ .++.+|++|+.|..+++|.++..- ........+...-.|...|.+++|+..+..+++|+.+++|
T Consensus 53 ~~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeec-cCCeEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3899999999998 779999999999999999987521 1111111112222344679999999989999999999999
Q ss_pred EEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCe-EEEEEecCC-C
Q 004969 575 ALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGN-VMVCFSPDD-H 650 (721)
Q Consensus 575 rlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~-vsl~fSpdg-~ 650 (721)
.+.|+.+.+.+..+.. ...+.|+.+..+|.. +++++.+.++.|.+||.|..+ ....+........ .++-|+|.. .
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999999988872 123489999999997 899999999999999999864 2222222222222 388999955 5
Q ss_pred EEEEEeCCCcEEEEEcCCC--cc------ccccc---CeEEEEECCCC
Q 004969 651 YLLGKGSGTSMFVQSLRGD--PF------RDFNM---SILAAYTRPSS 687 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~g~--~l------~~~~~---~V~~v~fsP~~ 687 (721)
.|++.+..+.+-+||++.. ++ ++... .-+++.|+|.|
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 6778888999999999832 21 12211 23567888887
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=6e-12 Score=132.75 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=129.3
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE-----eccCCCeEEEEEecCCCEEEEEeCCC
Q 004969 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT-----FDEFDQLTSVHVNSMDELFLASGYSK 572 (721)
Q Consensus 498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~-----~~~~~~V~sv~~sp~~~~lls~g~Dg 572 (721)
..+|..+.|.+...++++||+.|..|++|-+......... ..+. -.|...|+.+.|+|+|+.+++|+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3689999998666669999999999999999876552110 1222 24667899999999999999999999
Q ss_pred cEEEEECC--------C--------CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969 573 NIALYDIN--------S--------GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS 636 (721)
Q Consensus 573 ~IrlWDl~--------s--------~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~ 636 (721)
.|.+|-.. + ....+.+.+ |...|..++|+|++ .++++|+.|.++++||+..+.. ...+..
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l--~~~~~d 163 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL--LAILDD 163 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCC-ceeeeeeccceEEEEEecccee--Eeeccc
Confidence 99999766 2 112334445 99999999999999 8999999999999999999954 555677
Q ss_pred CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 637 SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 637 ~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|...+ .++|.|-++|+++-+.|...+++++.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeee
Confidence 77777 89999999999998888876666653
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=2.5e-10 Score=123.63 Aligned_cols=211 Identities=11% Similarity=0.157 Sum_probs=137.1
Q ss_pred EEEEECCCeEEEEECCC-Ce--EEEEeecCCCCCCeEEEEEeeCCCCEEEEE-eCCCeEEEEEcCCCCCcccccccCcce
Q 004969 469 MVFGTLDGEIVVVNHEN-EN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 469 LasGs~DG~I~IWdl~t-g~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+++...++.|.+|++.+ |+ .+..++ +.+....++++ +++++|+++ ..++.|.+|++..... +...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~------ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGA-LTFA------ 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCc-eEEe------
Confidence 44557789999999964 43 344443 33556778888 677877665 4588999999973111 1100
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-C---cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-G---RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s-~---~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr 619 (721)
...........++++|+++.+++++. ++.|.+||+.+ + +.+..+. +......++++|++..++++...++.|.
T Consensus 74 ~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 74 AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 01111224578999999999998875 78999999974 3 2333333 3345677899999955556667789999
Q ss_pred EEECCCC-Ccee----EEEecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcCC--Cccccc------------ccCeE
Q 004969 620 LWDLRQK-PIQP----CYTASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSLRG--DPFRDF------------NMSIL 679 (721)
Q Consensus 620 IWDlrs~-~~~~----~~~~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~g--~~l~~~------------~~~V~ 679 (721)
+||+.+. .... ........++..++|+|+|++++++.. ++.|.+|++.. ..+... .....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 9999763 2211 122233444557899999999988876 89999999962 122111 01123
Q ss_pred EEEECCCCCcccc
Q 004969 680 AAYTRPSSKSEIV 692 (721)
Q Consensus 680 ~v~fsP~~~~~~v 692 (721)
.+.++|+++..++
T Consensus 232 ~i~~~pdg~~lyv 244 (330)
T PRK11028 232 DIHITPDGRHLYA 244 (330)
T ss_pred eEEECCCCCEEEE
Confidence 5789999954433
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=123.64 Aligned_cols=237 Identities=15% Similarity=0.179 Sum_probs=165.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP- 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~- 533 (721)
.|+++.|-. + .++.+|..-|.|++|++++.+....+.. .|...|+.+.-.| ++.+.+-+.|+.+.+|++.....
T Consensus 16 ~v~s~~fqa-~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p--~d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 16 SVTSVLFQA-N-ERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIP--NDSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred hheehhhcc-c-hhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecC--CcchhhcCCCceEEEEEccCcceE
Confidence 478888877 4 4599999999999999999888877764 4567899888763 37789999999999999986221
Q ss_pred -------------ccccccc------------------------CcceeEec------cCCCeEEEEEecC--CCEEEEE
Q 004969 534 -------------SIRGMHY------------------------GAGTVTFD------EFDQLTSVHVNSM--DELFLAS 568 (721)
Q Consensus 534 -------------~~~~~~~------------------------~~~~~~~~------~~~~V~sv~~sp~--~~~lls~ 568 (721)
......+ ....+... ..+.+++..+.-. ...++.+
T Consensus 91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla 170 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA 170 (323)
T ss_pred EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence 0000000 00000110 1233555554221 2334444
Q ss_pred e-CCCcEEEEECCCCcEEEEEc---------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC--Ccee--EEEe
Q 004969 569 G-YSKNIALYDINSGRRLQVFA---------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK--PIQP--CYTA 634 (721)
Q Consensus 569 g-~Dg~IrlWDl~s~~~v~~l~---------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~--~~~~--~~~~ 634 (721)
| .+|.+.+||+.++..+..+. ..|..+|.++.|.+.. ..=++|+.+..+..|.+... .+.. ..++
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe
Confidence 4 68999999999985443332 1388999999998765 45567788888889988643 2211 1122
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969 635 SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 705 (721)
Q Consensus 635 ~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k 705 (721)
.+.+...+..-||++.+|+++.|+.|+||..+ .+| ++-|...|++++|+|+. +++|.+|..+.
T Consensus 250 -knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-------~lmAaaskD~r 316 (323)
T KOG0322|consen 250 -KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-------ELMAAASKDAR 316 (323)
T ss_pred -cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-------chhhhccCCce
Confidence 23333367889999999999999999999987 444 56678899999999998 99999998743
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3e-10 Score=127.84 Aligned_cols=211 Identities=13% Similarity=0.025 Sum_probs=139.0
Q ss_pred CeEEEEEeCCCCCEEEEEE---CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEE-eCCC--eEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGT---LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNG--SLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs---~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg-s~DG--tVrIWDi 528 (721)
.+.+.+|+| ||+.|+..+ .+..|.+|++.+|+........+ .+....|+ ++++.|+.. +.+| .|.+||+
T Consensus 200 ~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 200 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFS-PDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred ceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEEC-CCCCEEEEEEcCCCCcEEEEEEC
Confidence 478899999 888888654 24579999999886544332223 34568898 677777654 4455 5888999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KN--IALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.++... .+ ..+...+....|+|++..++.++.+ +. |.++|+.+++.. .+.. +........|+|+|
T Consensus 275 ~tg~~~--~l--------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~SpDG 342 (429)
T PRK03629 275 ASGQIR--QV--------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG 342 (429)
T ss_pred CCCCEE--Ec--------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccCEEECCCC
Confidence 875431 11 1122346788999999998877753 44 555577766543 3332 34456678999999
Q ss_pred CcEEEEEEC-C--CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCc---EEEEEcCCCc---cccccc
Q 004969 606 PSIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS---MFVQSLRGDP---FRDFNM 676 (721)
Q Consensus 606 ~~lLaSgs~-D--gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~---I~VWDl~g~~---l~~~~~ 676 (721)
..++..+. + ..|.+||+.++....+. .........|+|||++|+.++.++. ++++++.|.. +..+.+
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 55555443 3 35888999887543322 1111225789999999999887764 6788887654 334456
Q ss_pred CeEEEEECCC
Q 004969 677 SILAAYTRPS 686 (721)
Q Consensus 677 ~V~~v~fsP~ 686 (721)
.+...+|+|-
T Consensus 419 ~~~~p~Wsp~ 428 (429)
T PRK03629 419 QVKFPAWSPY 428 (429)
T ss_pred CcCCcccCCC
Confidence 6777888873
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1e-10 Score=131.68 Aligned_cols=201 Identities=13% Similarity=0.108 Sum_probs=132.2
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
+.+|.+||..... ...+. .|...+.+.+|+ ++++.|+.++.+ ..|.+||+.+++.... ..+ ..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l--------~~~--~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN--RSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVV--------ASF--RG 248 (429)
T ss_pred eEEEEEECCCCCC-ceEec--cCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEE--------ecC--CC
Confidence 5789999987544 44444 667789999999 688888887654 4799999987653111 011 12
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc
Q 004969 552 QLTSVHVNSMDELFLASG-YSKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g-~Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~ 628 (721)
.....+|+|++..++.++ .+|.+.| ||+.+++. ..+.. +...+....|+|+|..+++++..++..+||++.....
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 234679999999988875 5776555 56666654 44544 6667889999999944455555678888888754221
Q ss_pred eeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--ccCeEEEEECCCCCcccccccEEEEecC
Q 004969 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
... .+ .+.. ....|+|||++|+.++.++ +.+||+.+...... ........|+|++ .+|++++.
T Consensus 327 ~~~-~l-~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG-------~~i~~~s~ 391 (429)
T PRK01742 327 GAS-LV-GGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG-------IMIIYSST 391 (429)
T ss_pred CeE-Ee-cCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC-------CEEEEEEc
Confidence 111 11 2222 3568999999998887654 66699874332211 1233557899999 66666554
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.29 E-value=5.1e-11 Score=129.40 Aligned_cols=178 Identities=15% Similarity=0.200 Sum_probs=133.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC----ccccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP----SIRGM 538 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~----~~~~~ 538 (721)
.+--+..|-.-|.|.+.|....+..+.+... -.+..|+++.|.|.+...++.+-.+|.+.+||...... ....+
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 5566888888999999987653322222211 12478999999988888999999999999998753111 11111
Q ss_pred cc--------------CcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 539 HY--------------GAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 539 ~~--------------~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
.. ......+ ...+.|...+|+|++.++++.+.||.+||||..+.+.+-.++. .-+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcC
Confidence 10 0111111 1234689999999999999999999999999999888777664 667899999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS 646 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS 646 (721)
|| +++++|+.|.-|.||.+...+ .+...++|..+| .++|+
T Consensus 343 DG-KyIvtGGEDDLVtVwSf~erR--VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 343 DG-KYIVTGGEDDLVTVWSFEERR--VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred Cc-cEEEecCCcceEEEEEeccce--EEEeccccccceeeEeec
Confidence 99 899999999999999999874 367788999999 68887
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.29 E-value=2.4e-10 Score=126.35 Aligned_cols=198 Identities=11% Similarity=0.161 Sum_probs=138.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE--------eec---------------------------CCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--------IPS---------------------------FGAMN 499 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~--------l~~---------------------------~~H~~ 499 (721)
.|.|++|+. +|+++|+|+.|..|.+|+.+-...++. +.. +....
T Consensus 55 tVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~ 133 (1081)
T KOG1538|consen 55 TVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS 133 (1081)
T ss_pred eEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe
Confidence 589999999 999999999999999998653222211 100 01123
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-----CEEEEEeCCCcE
Q 004969 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-----ELFLASGYSKNI 574 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-----~~lls~g~Dg~I 574 (721)
.|.+.+|. .+|.+++-|-.+|+|.+-+-...........+ ...++|.+++|+|.. +.+++.....++
T Consensus 134 R~~~CsWt-nDGqylalG~~nGTIsiRNk~gEek~~I~Rpg-------g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 134 RIICCSWT-NDGQYLALGMFNGTISIRNKNGEEKVKIERPG-------GSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred eEEEeeec-CCCcEEEEeccCceEEeecCCCCcceEEeCCC-------CCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 45566675 78888888888999988765443221111111 123679999999864 456677777888
Q ss_pred EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL 653 (721)
Q Consensus 575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La 653 (721)
.+|.+. |+.+..-+. -.-...|+++-|+| .+++.|+.|+.+++|-... ..+-++.....++ +++..|++++++
T Consensus 206 SFy~Ls-G~~Igk~r~-L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 206 SFYQLS-GKQIGKDRA-LNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred EEEEec-ceeeccccc-CCCCchhheeccCC-cEEEEccCCCceEEEeecC---eEEeeccccceeEEEEEEccCCceEE
Confidence 888776 554443222 34456789999999 6888999999999997543 3344444444565 999999999999
Q ss_pred EEeCCCcEEEEEcC
Q 004969 654 GKGSGTSMFVQSLR 667 (721)
Q Consensus 654 sgs~Dg~I~VWDl~ 667 (721)
.|+.||+|--|++-
T Consensus 280 ~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccCeeehhhhH
Confidence 99999999988864
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.4e-10 Score=120.40 Aligned_cols=232 Identities=17% Similarity=0.207 Sum_probs=170.8
Q ss_pred CeEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCeEEEEe----ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVSYI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~tg~~i~~l----~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
++++++|.-....-+..+. .|..+....++.+.+...+ ......++|.+++. ....|++|-.+|.+.+|..+
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEecc
Confidence 5777888763333344444 6777777777766555443 22345677888875 35688999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE-EeCC--CcEEEEECCCCcEEEEEccc--------cCCCeEE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SGYS--KNIALYDINSGRRLQVFADM--------HKEHINV 598 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g~D--g~IrlWDl~s~~~v~~l~~~--------h~~~V~s 598 (721)
.+... ......+....++..+.-++....|++ ||.. ..+.+||+.+.+.++.-+.. -.-+++.
T Consensus 134 ~~d~h------ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 134 SGDLH------SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred CCccc------cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 65421 112233334456677777777777777 5666 78999999988766654421 1336778
Q ss_pred EEEcCCC-CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----c
Q 004969 599 VKFSNHS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----F 671 (721)
Q Consensus 599 I~fsPdg-~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l 671 (721)
+.|-|.. .+.||+++.-+.+|+||++.+ ..|+..+.....++ ++...|+|+++++|..-|.+..||+++.. +
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 9998861 279999999999999999965 46777777666666 89999999999999999999999999443 5
Q ss_pred cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.++.+++.+++.||.. +++|+||..
T Consensus 287 kg~tGsirsih~hp~~-------~~las~GLD 311 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTH-------PVLASCGLD 311 (412)
T ss_pred CCccCCcceEEEcCCC-------ceEEeeccc
Confidence 6668899999999999 999999987
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=131.41 Aligned_cols=233 Identities=15% Similarity=0.203 Sum_probs=172.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC-CEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~-~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
|..|.|+. .|..+++|+.|..|.+||+..+.....+.. ||...|..-.|.|..+ ..+++++.||.|++=.+......
T Consensus 145 VntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 145 VNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred cceeeecc-cCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 77899999 999999999999999999999988877775 8999999989987654 57899999999999776543321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc--cccCC---CeEEEEEcCCCCcE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--DMHKE---HINVVKFSNHSPSI 608 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~---~V~sI~fsPdg~~l 608 (721)
........|.++|..++.-|... .|+++|.|+.+.-+|++++.+...+. ..+.. ..++|+.+|..++.
T Consensus 223 ------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 223 ------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 11123345778888899888765 57788899999999999876544433 21333 57789999998889
Q ss_pred EEEEECCCcEEEEECCCCCcee------------------------EEE-------------------------------
Q 004969 609 FATSSFDQDVKLWDLRQKPIQP------------------------CYT------------------------------- 633 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~------------------------~~~------------------------------- 633 (721)
+++|+.|-.+|+||.+.-.... .+.
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 9999999999999987521100 000
Q ss_pred ----------ecCCCC--eE-EE-EEecCCCEEEEEeCCCcEEEEEcCCCc-cccc---ccCeEEEEECCCCCccccccc
Q 004969 634 ----------ASSSKG--NV-MV-CFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF---NMSILAAYTRPSSKSEIVKVN 695 (721)
Q Consensus 634 ----------~~~~~~--~v-sl-~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~---~~~V~~v~fsP~~~~~~v~v~ 695 (721)
..+|.. .| .+ -|-|...|+++|+.-|.|.||+-.+.. ++-+ ...|+|+.-||.- |
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-------P 449 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-------P 449 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-------c
Confidence 001100 01 11 245666778899999999999987433 2222 3479999999998 9
Q ss_pred EEEEecCC
Q 004969 696 LLASTDHC 703 (721)
Q Consensus 696 lLASgs~~ 703 (721)
+|||+|..
T Consensus 450 vLAsSGid 457 (559)
T KOG1334|consen 450 VLASSGID 457 (559)
T ss_pred hhhccCCc
Confidence 99999987
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.27 E-value=3.6e-11 Score=130.27 Aligned_cols=180 Identities=12% Similarity=0.149 Sum_probs=132.7
Q ss_pred CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|+.++.|-.|+| +|.-+++++.||.|++|.-. |....++. ....+|.|++|-|...+.+++.+. .+.|=-+..
T Consensus 102 AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GMLRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~ 175 (737)
T KOG1524|consen 102 AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GMLRSTVV--QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAA 175 (737)
T ss_pred hhhhhhhhcccCC-CCceeeeecCCceEEEEecc-chHHHHHh--hcCceeEEEEECCCCCceEEecCC--eEEEeeccc
Confidence 3445688889999 99999999999999999954 55544444 334789999999766666666554 344433333
Q ss_pred CCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 531 MPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
....+.+. |.+-|.+++|++..+.+++||.|-..++||.. |..+.+-.. |..+|++++|+|+. .+
T Consensus 176 ----------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITSva~npd~--~~ 241 (737)
T KOG1524|consen 176 ----------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITSVAFNPEK--DY 241 (737)
T ss_pred ----------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-hccceeeeeecccc--ce
Confidence 22344443 44568999999999999999999999999976 777766664 99999999999984 67
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~V 663 (721)
+.+|.. +.|+ .-+....+..++||+||..+++|...|.+.+
T Consensus 242 ~v~S~n-t~R~------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLWSYN-TARF------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee-eeee------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 777643 3441 1122223348999999999999998887653
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.7e-10 Score=111.10 Aligned_cols=195 Identities=14% Similarity=0.216 Sum_probs=136.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
|.++...|+.+.++.+| .|+.++-||+++|+...+++ ||++.|.++.-- .....++||+.||++|+||.++++...
T Consensus 117 INam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred cceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc--CCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeE
Confidence 77888899565555555 79999999999999999998 999999999863 456789999999999999999987632
Q ss_pred c-ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 536 R-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 536 ~-~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
. ..+.+....+..-...|.+++. +.+.++ +|....+.+|.+++.++...|. -...+..+.|..+ .+++++.
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~--~edWlv-CGgGp~lslwhLrsse~t~vfp--ipa~v~~v~F~~d---~vl~~G~ 264 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAV--NEDWLV-CGGGPKLSLWHLRSSESTCVFP--IPARVHLVDFVDD---CVLIGGE 264 (325)
T ss_pred EeccccChhhcCcccCceeEEEec--cCceEE-ecCCCceeEEeccCCCceEEEe--cccceeEeeeecc---eEEEecc
Confidence 2 1122222222222234777776 445555 4556789999999999999987 6778888999754 5777888
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD-DHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpd-g~~Lasgs~Dg~I~VW 664 (721)
.+.|.-|.+..- .. ....-++....+..|+.. -+++..++..+.+.|+
T Consensus 265 g~~v~~~~l~Gv-l~-a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 265 GNHVQSYTLNGV-LQ-ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeeeeeccE-EE-EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 888998987652 11 111122233334555432 3455556666777665
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-10 Score=135.29 Aligned_cols=202 Identities=16% Similarity=0.217 Sum_probs=141.5
Q ss_pred EECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEe
Q 004969 481 VNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVN 559 (721)
Q Consensus 481 Wdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s 559 (721)
|+.+ |..+..+. .|...|..++-+++++.+++|||.||+|++|+.+.-.... .......++. ....+..+...
T Consensus 1034 W~p~-G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCcc-ceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 6654 67777665 8889999999998888999999999999999998632210 1111223333 44668888888
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC--c-----EEEEEccccCCC-eEEEEEcCCCCc-EEEEEECCCcEEEEECCCCCcee
Q 004969 560 SMDELFLASGYSKNIALYDINSG--R-----RLQVFADMHKEH-INVVKFSNHSPS-IFATSSFDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 560 p~~~~lls~g~Dg~IrlWDl~s~--~-----~v~~l~~~h~~~-V~sI~fsPdg~~-lLaSgs~DgtIrIWDlrs~~~~~ 630 (721)
+.++.+++++.||.|++.++... + ..+.......+. |..-+|...... .++.+..-+.|..||+++.....
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999999999999998852 1 112211111222 333344433334 77788888999999999864433
Q ss_pred EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----ccCeEEEEECCCCC
Q 004969 631 CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----NMSILAAYTRPSSK 688 (721)
Q Consensus 631 ~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----~~~V~~v~fsP~~~ 688 (721)
..+.....|.+ +++.+|.+.+++.|+..|.+-+||+| +-++..+ ..++..+..+|..+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence 34444444555 99999999999999999999999999 4444332 45677777777663
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=7.7e-10 Score=129.82 Aligned_cols=212 Identities=16% Similarity=0.199 Sum_probs=148.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|..++.++.++.++++|+.||+|++||... +.....+...-....+..+... ..++.+|.++.||.|++.+++
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEEEEcc
Confidence 4667788886779999999999999999753 1111222211235678888887 678999999999999999998
Q ss_pred CCCCc--c------ccc------------------------ccCcceeEec--------------cCCCeEEEEEecCCC
Q 004969 530 HMPPS--I------RGM------------------------HYGAGTVTFD--------------EFDQLTSVHVNSMDE 563 (721)
Q Consensus 530 ~~~~~--~------~~~------------------------~~~~~~~~~~--------------~~~~V~sv~~sp~~~ 563 (721)
..... . ... ......+.++ .++.|++++.+|.+.
T Consensus 1129 ~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~ 1208 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN 1208 (1431)
T ss_pred ccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCce
Confidence 62110 0 000 0011111111 346699999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC--cEEEEEE--CCCcEEEEECCCCCceeEEEecCC--
Q 004969 564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSS--FDQDVKLWDLRQKPIQPCYTASSS-- 637 (721)
Q Consensus 564 ~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~--~lLaSgs--~DgtIrIWDlrs~~~~~~~~~~~~-- 637 (721)
.++.|...|.+.+||+|-+.++.....++..++..+..+|..+ ...++++ ..+.|.+|++.++.+..++.....
T Consensus 1209 WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1209 WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 9999999999999999999999888755678888888887654 4444444 477899999999866554433200
Q ss_pred -------------CCe---EEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 638 -------------KGN---VMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 638 -------------~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
... +..++..-+.++.+|+.|..|+.||..
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 111 123444456788999999999999976
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.9e-11 Score=130.27 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=124.4
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCc
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKN 573 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~ 573 (721)
||.+.|.+++|+ .+|.+|++||+|-.+.|||.-..+... .+.-.|...|.++.|-|. +..+++|+.|+.
T Consensus 48 GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~Kllh--------sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 48 GHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLH--------SISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cccceecceeec-CCCCEEeecCCcceEEeecchhcceee--------eeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 999999999998 899999999999999999998654421 233456677899999875 456777778999
Q ss_pred EEEEECCC----------CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEE-------Eec
Q 004969 574 IALYDINS----------GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCY-------TAS 635 (721)
Q Consensus 574 IrlWDl~s----------~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~-------~~~ 635 (721)
|+++|+.. .+..+.+.. |...|..++-.|.+|+.+.+++.||+||-+|+|... +.+.. ...
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999984 234444554 899999999999999999999999999999999742 11110 000
Q ss_pred CCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC
Q 004969 636 SSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 636 ~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~ 667 (721)
..--.. ++..+|.. .+|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111112 78999954 678889999999999954
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=8.2e-10 Score=124.48 Aligned_cols=210 Identities=10% Similarity=0.044 Sum_probs=135.6
Q ss_pred CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCC--eEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNG--SLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DG--tVrIWDi 528 (721)
.+.+.+|+| +++.|+..+.+ ..|.+||+.+++..... .+.+...+..|+ ++++.+ ++.+.+| .|.+||+
T Consensus 205 ~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 205 PILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred ccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceEC-CCCCEEEEEEeCCCCceEEEEEC
Confidence 367889999 89988887743 47999999888764332 223445578998 577655 4556665 5899999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKN--IALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.++... .+. .+.......+|+|++..++.++. +|. |.++|+.+++...... +.......+|+|+|
T Consensus 280 ~~g~~~--~lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG 347 (433)
T PRK04922 280 GSRQLT--RLT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDG 347 (433)
T ss_pred CCCCeE--ECc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCC
Confidence 875431 111 11123456799999998888774 444 7777877766443322 33445578999999
Q ss_pred CcEEEEEECC-C--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc---cc
Q 004969 606 PSIFATSSFD-Q--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF---NM 676 (721)
Q Consensus 606 ~~lLaSgs~D-g--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~---~~ 676 (721)
..++..+.+ + .|.+||+.++.... +..........|+|||++++..+.+ +.++++++.|...+.. .+
T Consensus 348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~---Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 348 -KKIAMVHGSGGQYRIAVMDLSTGSVRT---LTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred -CEEEEEECCCCceeEEEEECCCCCeEE---CCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence 566554433 2 69999998875432 2222222367999999998876653 3678888876543322 33
Q ss_pred CeEEEEECC
Q 004969 677 SILAAYTRP 685 (721)
Q Consensus 677 ~V~~v~fsP 685 (721)
.+...+|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 455556665
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.3e-11 Score=125.02 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=127.8
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 004969 502 LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS 581 (721)
Q Consensus 502 ~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s 581 (721)
..++|+ .++..+++|+.||++|||+....... .....|+..|.+++|+|++..+++.|.| ..+|||.++
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~---------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTI---------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhh---------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 678888 78899999999999999997664331 1123466789999999999999999999 899999999
Q ss_pred CcEEEEEcc-ccCCCeEEEEEcCCC---CcE-EEEEECCCcEEEEECCCCCc----eeEEEecCCCCeEEEEEecCCCEE
Q 004969 582 GRRLQVFAD-MHKEHINVVKFSNHS---PSI-FATSSFDQDVKLWDLRQKPI----QPCYTASSSKGNVMVCFSPDDHYL 652 (721)
Q Consensus 582 ~~~v~~l~~-~h~~~V~sI~fsPdg---~~l-LaSgs~DgtIrIWDlrs~~~----~~~~~~~~~~~~vsl~fSpdg~~L 652 (721)
|..+..... ........+.|+.++ ..+ ++....-+.|+.||+..... ........+..+.+++.|++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 977666552 123345567777654 222 33334456677777654322 111222334455689999999999
Q ss_pred EEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCCCCc
Q 004969 653 LGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 653 asgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~~~~ 689 (721)
+.|+.||.|.|++...-. -+.|.+.|..+.|+|+.++
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 999999999999976211 2456779999999999843
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=1.5e-09 Score=111.95 Aligned_cols=178 Identities=14% Similarity=0.267 Sum_probs=126.2
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEE
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~s 555 (721)
..|.|||-...+++..+. -..+|.+|.+. .+.+++.- .+.|.||........+.... +...+..+.+
T Consensus 75 NkviIWDD~k~~~i~el~---f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~e------t~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS---FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIE------TRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE---eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeee------cccCCCceEe
Confidence 579999977777777775 35789999985 45565554 56999999986433221111 1111223444
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeE
Q 004969 556 VHVNSMDELFLASG-YSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPC 631 (721)
Q Consensus 556 v~~sp~~~~lls~g-~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~ 631 (721)
++-+.....++.-| .-|.|.|-|+...+. ...+. +|.+.|.|++.+-+| .++||+|..|+ |||||..++.....
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 44333333444444 369999999987655 34444 499999999999999 89999999998 79999999965443
Q ss_pred EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+.-......+ +++|||++.+|+++|..|+++|+.++.
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3322222334 999999999999999999999999984
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5.8e-10 Score=117.59 Aligned_cols=215 Identities=11% Similarity=0.150 Sum_probs=161.2
Q ss_pred CEEEEEECCCeEEEEECCCCe----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--CeEEEEEcCCCCCccccccc
Q 004969 467 CLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRGMHY 540 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--GtVrIWDi~~~~~~~~~~~~ 540 (721)
..|+++-.+|.+.+|..+.+. ....+. . ...+..|.-++..+..+++||.. ..++|||++..++.+.....
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la--~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--T-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeee--c-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 678888999999999998443 222232 1 25567777776777888889998 89999999997665544433
Q ss_pred CcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc
Q 004969 541 GAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt 617 (721)
......+.-+-.++++.|-+. ...|+++..-+.+|+||.+.+ +++..|.- ...+++++...|.+ +.+++|..-|.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~g-n~Iy~gn~~g~ 270 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSG-NFIYTGNTKGQ 270 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCC-cEEEEecccch
Confidence 333333333445778888777 788999999999999999975 57777775 67899999999999 89999999999
Q ss_pred EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-ccc-c-ccCeEEEEECCCC
Q 004969 618 VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRD-F-NMSILAAYTRPSS 687 (721)
Q Consensus 618 IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~-~-~~~V~~v~fsP~~ 687 (721)
+..||+++++. ....+.+-.+.+ ++..+|.+++++++|-|..++|+|+..+. +.. + ....+.+-+.++-
T Consensus 271 l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 271 LAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred hheecccCcee-eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 99999999853 233356666666 89999999999999999999999998532 211 1 3455566665543
No 214
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.1e-10 Score=127.66 Aligned_cols=168 Identities=18% Similarity=0.300 Sum_probs=132.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
.|.|+.+.+ ++..+.+|+-||+|+.|++... .....+. ||.+.|+.++++ .....|++++.||+|+
T Consensus 346 PVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~--Ghtdavw~l~~s-~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 346 PVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL--GHTDAVWLLALS-STKDRLLSCSSDGTVR 421 (577)
T ss_pred ceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhcccee--ccccceeeeeec-ccccceeeecCCceEE
Confidence 689999999 9999999999999999976411 1122333 999999999998 6778899999999999
Q ss_pred EEEcCCCCCccccc-c--c-------------------------------CcceeEec--------cCCCeEEEEEecCC
Q 004969 525 LYDIRHMPPSIRGM-H--Y-------------------------------GAGTVTFD--------EFDQLTSVHVNSMD 562 (721)
Q Consensus 525 IWDi~~~~~~~~~~-~--~-------------------------------~~~~~~~~--------~~~~V~sv~~sp~~ 562 (721)
.|+.....+..... . + ......+. ....+.-+.++|..
T Consensus 422 ~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~ 501 (577)
T KOG0642|consen 422 LWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA 501 (577)
T ss_pred eeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC
Confidence 99987654411000 0 0 00000000 11347788899999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc
Q 004969 563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (721)
Q Consensus 563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~ 628 (721)
+..+++..|+.|+++|..++++++.... |...++++++.|+| -++++|+.|+.+++|.+....+
T Consensus 502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a-~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 502 DITFTAHEDRSIRFFDNKTGKILHSMVA-HKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred CeeEecccCCceecccccccccchheee-ccceecceeecCCC-ceEEeecCCceeehhhccchhe
Confidence 9999999999999999999999999886 99999999999999 5999999999999999987644
No 215
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.21 E-value=6.2e-11 Score=119.14 Aligned_cols=161 Identities=20% Similarity=0.358 Sum_probs=124.3
Q ss_pred CeEEEEEeCCCCC--EEEEEECCCeEEEEECCCCeEEEEee--------cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISC--LMVFGTLDGEIVVVNHENENIVSYIP--------SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~--~LasGs~DG~I~IWdl~tg~~i~~l~--------~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
.|.|..+...++. ++++|..+|.|.+||+.++..+-.++ ...|..+|.++.|- +.-+.=++|+.+..+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLV 230 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccce
Confidence 4777776554443 56788899999999999884433222 23789999999996 3444557788888899
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
.|.+.......+ ........+ -.|..+.+-|++..++++|.|+.||+|..++..++..++. |...|++++|+|+
T Consensus 231 ~~Sl~~s~gslq----~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQ----IRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCccc----ccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCC
Confidence 999876422111 111222222 2477888889999999999999999999999999999997 9999999999999
Q ss_pred CCcEEEEEECCCcEEEEEC
Q 004969 605 SPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDl 623 (721)
. .++|+++.|++|-+|++
T Consensus 305 ~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 C-ELMAAASKDARISLWKL 322 (323)
T ss_pred C-chhhhccCCceEEeeec
Confidence 7 69999999999999986
No 216
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=118.91 Aligned_cols=161 Identities=13% Similarity=0.197 Sum_probs=115.7
Q ss_pred eEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEe----CCCeEEEEEcC
Q 004969 456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGS----DNGSLKLYDIR 529 (721)
Q Consensus 456 V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs----~DGtVrIWDi~ 529 (721)
+..+.|... .+..+.+++.||+|++||+........+....+. .+-.+++-+ ...+.+++|. .|-.|.+||++
T Consensus 73 ~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR 151 (376)
T KOG1188|consen 73 TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN-CKKNIIACGTELTRSDASVVLWDVR 151 (376)
T ss_pred ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc-CcCCeEEeccccccCceEEEEEEec
Confidence 344556553 4578899999999999999987766666554555 455666643 3556666664 36789999999
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc----EEEEEccccCCCeEEEEEcCC
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR----RLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~V~sI~fsPd 604 (721)
..+..+. ...-.|.+.|+++.|||.++. +++|+.||-|.+||+.... .+.++. |...|.++.|...
T Consensus 152 ~~qq~l~-------~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 152 SEQQLLR-------QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSIHLIGWLSK 222 (376)
T ss_pred cccchhh-------hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccceeeeeeeecC
Confidence 8765322 223347788999999998754 5566679999999998532 334444 7788999999887
Q ss_pred CCcEEEEEECCCcEEEEECCCC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~ 626 (721)
+-..+.+-+.+.+..+|++..+
T Consensus 223 ~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 223 KYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CcceEEEEEccCceeEEEccCC
Confidence 7446777888888889987653
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=125.77 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=126.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--------------CeEEEEeecC------------CCCCCeEEEEEee
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--------------ENIVSYIPSF------------GAMNSVLGLCWLK 508 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--------------g~~i~~l~~~------------~H~~~V~sl~fsp 508 (721)
+|+|+.|-|-+...++++-.+|.+++||.+. +......... --.++|...+|+
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS- 299 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS- 299 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc-
Confidence 6999999998888888999999999997531 1111111110 123578899998
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF 588 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l 588 (721)
+++.+||+.|.||.+||+|..+....-. .....+...|++|+|++.+|++||.|.-|.||.+..++.+..=
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGV---------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHH---------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 5999999999999999999998543100 0112256799999999999999999999999999999998888
Q ss_pred ccccCCCeEEEEEcCC-----------------------------------C------------CcEEEEEECCCcEEEE
Q 004969 589 ADMHKEHINVVKFSNH-----------------------------------S------------PSIFATSSFDQDVKLW 621 (721)
Q Consensus 589 ~~~h~~~V~sI~fsPd-----------------------------------g------------~~lLaSgs~DgtIrIW 621 (721)
++ |+++|+.|+|.|. + .+.|.+.+.|..+.+|
T Consensus 371 qG-HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLW 449 (636)
T KOG2394|consen 371 QG-HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLW 449 (636)
T ss_pred cc-cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEE
Confidence 87 9999999999831 0 1467888999999999
Q ss_pred ECCCCC
Q 004969 622 DLRQKP 627 (721)
Q Consensus 622 Dlrs~~ 627 (721)
|+....
T Consensus 450 DlteD~ 455 (636)
T KOG2394|consen 450 DLTEDV 455 (636)
T ss_pred ecchhh
Confidence 997653
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.5e-09 Score=120.64 Aligned_cols=210 Identities=9% Similarity=0.024 Sum_probs=135.3
Q ss_pred CeEEEEEeCCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCe--EEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGS--LKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGt--VrIWDi 528 (721)
.+.+.+|+| ||+.|+..+. +..|.+||+.+|+... +. .+.+.+...+|+ ++++.| ++.+.+|. |.+||+
T Consensus 203 ~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~--~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 203 LVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG--NFPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred CeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee--cCCCcccCcEEC-CCCCEEEEEEecCCCceEEEEEC
Confidence 488999999 8888887764 4689999999887643 32 445667788998 577765 46666665 666687
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.++.. ..+.. +........|+|++..++.++. + ..|++||+..++...... +...+....|+|+|
T Consensus 278 ~~~~~--~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG 345 (435)
T PRK05137 278 RSGTT--TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRG 345 (435)
T ss_pred CCCce--EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--CCCcccCeEECCCC
Confidence 76543 11111 1223466899999998887764 3 368888987665543332 34556778999999
Q ss_pred CcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC------CcEEEEEcCCCccccc--
Q 004969 606 PSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG------TSMFVQSLRGDPFRDF-- 674 (721)
Q Consensus 606 ~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D------g~I~VWDl~g~~l~~~-- 674 (721)
..++..+.+ ..|.+||+.++... . +..........|+|||++|+..+.+ ..++++|+.+...+.+
T Consensus 346 -~~ia~~~~~~~~~~i~~~d~~~~~~~-~--lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 346 -DLIAFTKQGGGQFSIGVMKPDGSGER-I--LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred -CEEEEEEcCCCceEEEEEECCCCceE-e--ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 566554433 35888898665322 2 2221222368999999998765543 2578888876543322
Q ss_pred ccCeEEEEECC
Q 004969 675 NMSILAAYTRP 685 (721)
Q Consensus 675 ~~~V~~v~fsP 685 (721)
.+.+..-+|+|
T Consensus 422 ~~~~~~p~Wsp 432 (435)
T PRK05137 422 PGDASDPAWSP 432 (435)
T ss_pred CCCccCcccCC
Confidence 22344445555
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.19 E-value=1.7e-09 Score=108.57 Aligned_cols=149 Identities=15% Similarity=0.367 Sum_probs=105.2
Q ss_pred EEEEeCCCCCEEEEEEC----------CCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE--EeCCCeEE
Q 004969 458 QFEYHPSISCLMVFGTL----------DGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA--GSDNGSLK 524 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~----------DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS--gs~DGtVr 524 (721)
.+.|+| .|++|+.-.. -|...+|.++ .+.....+.. ...++|.+++|+ |+++.+++ |..++.|.
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~Ws-P~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWS-PNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEEC-cCCCEEEEEEccCCcccE
Confidence 578999 7766655333 2345555552 2334444443 334679999999 56666543 44678999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f 601 (721)
+||++. +. ...+ +..++..+.|+|+|..++++|. .|.+.+||.++.+.+..+. |. .++.++|
T Consensus 87 lyd~~~-~~----------i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~W 151 (194)
T PF08662_consen 87 LYDVKG-KK----------IFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEW 151 (194)
T ss_pred EEcCcc-cE----------eEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEE
Confidence 999963 11 2223 2356789999999999999984 4679999999999888876 44 4789999
Q ss_pred cCCCCcEEEEEEC------CCcEEEEECCC
Q 004969 602 SNHSPSIFATSSF------DQDVKLWDLRQ 625 (721)
Q Consensus 602 sPdg~~lLaSgs~------DgtIrIWDlrs 625 (721)
+|+| ++++++.. |..++||+...
T Consensus 152 sPdG-r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 152 SPDG-RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cCCC-CEEEEEEeccceeccccEEEEEecC
Confidence 9999 67777654 78899999864
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=6.6e-10 Score=116.00 Aligned_cols=178 Identities=16% Similarity=0.267 Sum_probs=129.2
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
-.+..++|+ +.-..++++..|-+|++||-+..... ..+-.....|++++|-|-+..-++.+.-+-|.+|.
T Consensus 99 ~dlr~~aWh-qH~~~fava~nddvVriy~ksst~pt---------~Lks~sQrnvtclawRPlsaselavgCr~gIciW~ 168 (445)
T KOG2139|consen 99 IDLRGVAWH-QHIIAFAVATNDDVVRIYDKSSTCPT---------KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWS 168 (445)
T ss_pred cceeeEeec-hhhhhhhhhccCcEEEEeccCCCCCc---------eecchhhcceeEEEeccCCcceeeeeecceeEEEE
Confidence 357789998 56677889999999999998873321 22222335699999999887777777667799997
Q ss_pred CCC----CcE--------EEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECCCCCceeEEEecCCCCeEEEEE
Q 004969 579 INS----GRR--------LQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQPCYTASSSKGNVMVCF 645 (721)
Q Consensus 579 l~s----~~~--------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~f 645 (721)
... +.. ...+++....+|++++|++|| ..+++++. |..|+|||..++...++.. .+..+...+.|
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkw 246 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKW 246 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEE
Confidence 652 221 122222123689999999999 67777765 6789999999998777652 33444557999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCC
Q 004969 646 SPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 646 Spdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~ 688 (721)
||||.+|+++.-|+..++|... .. +-..-.+.|..+.|+|.|.
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCC
Confidence 9999999999999999999544 11 1111245899999999995
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=3e-09 Score=119.70 Aligned_cols=213 Identities=12% Similarity=0.086 Sum_probs=132.3
Q ss_pred CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGtVrIWDi~~ 530 (721)
.+.+.+|+| +++.|+..+.+ ..|.+||+.+|+..... ...+.+.+..|+ ++++.|+ +.+.+|...||.++.
T Consensus 197 ~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 197 PIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC
Confidence 477899999 88888877643 46999999988764432 223456688998 6777665 677888877776643
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEE--CCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWD--l~s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.......+. .+........|+|+|..++.++. +|...+|. +.+++...... +.......+|+|+| +
T Consensus 272 ~~~~~~~lt--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~~SpDG-~ 340 (427)
T PRK02889 272 DGSGLRRLT--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPRISPDG-K 340 (427)
T ss_pred CCCCcEECC--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceEECCCC-C
Confidence 211111111 11123456789999999887764 45556664 44554333222 22334467899999 6
Q ss_pred EEEEEECCC---cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCcccc---cccCe
Q 004969 608 IFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRD---FNMSI 678 (721)
Q Consensus 608 lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~---~~~~V 678 (721)
.++..+.++ .|.+||+.++....+ ..........|+|||++|+.++.++ .+++.++.|...+. ..+.+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~l---t~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~ 417 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTAL---TDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDV 417 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEc---cCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCC
Confidence 666655443 699999988754322 2222223679999999998876544 35555665543221 23445
Q ss_pred EEEEECCC
Q 004969 679 LAAYTRPS 686 (721)
Q Consensus 679 ~~v~fsP~ 686 (721)
...+|+|-
T Consensus 418 ~~p~wsp~ 425 (427)
T PRK02889 418 REPSWGPF 425 (427)
T ss_pred CCCccCCC
Confidence 55566663
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.5e-09 Score=117.26 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=129.8
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~ 552 (721)
..|.+||...+ ..+.+. .|...+.+.+|+ ++++.|+..+. +..|.+||+.+++... .......
T Consensus 182 ~~l~~~d~dg~-~~~~lt--~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~----------l~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLT--DGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQREL----------VGNFPGM 247 (435)
T ss_pred eEEEEECCCCC-CcEEEe--cCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEE----------eecCCCc
Confidence 47889998644 444444 567789999999 68888877653 4689999998865311 1112335
Q ss_pred eEEEEEecCCCEEEEE-eCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEECCCC
Q 004969 553 LTSVHVNSMDELFLAS-GYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQK 626 (721)
Q Consensus 553 V~sv~~sp~~~~lls~-g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dg--tIrIWDlrs~ 626 (721)
+...+|+|+|..++.+ +.++ .|.+||+.+++.. .+.. +........|+|+| ..++..+ .+| .|.+||+.++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCC
Confidence 6778999999987654 4454 4888899877654 3443 55566789999999 5555554 333 5888898776
Q ss_pred CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
....+.. .........|+|||++|+..+.+ ..|.+||+.+...+.. ...+....|+|+++
T Consensus 325 ~~~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~ 389 (435)
T PRK05137 325 NPRRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGR 389 (435)
T ss_pred CeEEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCC
Confidence 5443322 11222367899999999876643 3688899875443322 22456689999993
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.15 E-value=1.6e-09 Score=111.80 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIAL 576 (721)
Q Consensus 498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl 576 (721)
..+|++.+|+ .+...++.+-....|.||.....+. ...... -.|...|+.++|+|..+.|++++.|..-++
T Consensus 10 ~~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~-------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 10 LEPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADL-------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred cCceeeeeec-CCCceEEeccCCceEEEEEecCCCC-------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 4689999998 7889999999999999999988653 111122 235567899999999999999999999999
Q ss_pred EECCC-C--cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCe-EEEEEecCCC
Q 004969 577 YDINS-G--RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGN-VMVCFSPDDH 650 (721)
Q Consensus 577 WDl~s-~--~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~-vsl~fSpdg~ 650 (721)
|.... + ++...+.. +...+++|.|+|.+ +.||+||....|.||-.....-- ..+.-...... .++.|+|++-
T Consensus 82 w~~~~~~~WkptlvLlR-iNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLR-INRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred cccCCCCeeccceeEEE-eccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 99843 3 34445554 88999999999999 89999999999999987764221 01111122233 4899999999
Q ss_pred EEEEEeCCCcEEEEEc-----CCCc--------------cc---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 651 YLLGKGSGTSMFVQSL-----RGDP--------------FR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl-----~g~~--------------l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|++|+.|+..+|+.. +.++ +. ...+.+..+.|+|.+ +.||--++.
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-------~~lawv~Hd 227 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-------NRLAWVGHD 227 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-------CEeeEecCC
Confidence 9999999999999873 2111 11 124579999999999 666665554
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=4.4e-09 Score=118.42 Aligned_cols=195 Identities=13% Similarity=0.100 Sum_probs=122.6
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~ 552 (721)
..|.+||.. |.....+. .+...+.+.+|+ ++++.|+.++.+ ..|.+||+.+++... .......
T Consensus 176 ~~L~~~D~d-G~~~~~l~--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------l~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSAL--SSPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRV----------VANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEec--cCCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEE----------eecCCCC
Confidence 467777774 44434443 556789999999 688888776643 459999998865311 0111234
Q ss_pred eEEEEEecCCCEEEEE-eCCCcEEEE--ECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CCCC
Q 004969 553 LTSVHVNSMDELFLAS-GYSKNIALY--DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL--RQKP 627 (721)
Q Consensus 553 V~sv~~sp~~~~lls~-g~Dg~IrlW--Dl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl--rs~~ 627 (721)
+....|+|++..++.+ +.+|...|| |+.++. ...+.. +........|+|||..+++++..+|...+|.+ .++.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 5678999999988754 567765555 455444 444543 55556678899999434444444566666655 4443
Q ss_pred ceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 628 IQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 628 ~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
...+ ...+ .......|||||++|+..+.++ .|++||+.+...+.. ........|+|+++
T Consensus 320 ~~~l-t~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~ 383 (427)
T PRK02889 320 AQRV-TFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGR 383 (427)
T ss_pred eEEE-ecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCC
Confidence 2222 2222 1222678999999998776554 599999874433322 12345678999994
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=4.3e-09 Score=120.64 Aligned_cols=223 Identities=16% Similarity=0.168 Sum_probs=151.9
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
.|++ |+++++... +..|.||...+|.++..+. +|..+++++.+.|... .++++++.||+|++||...+......
T Consensus 23 vfSn-D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 23 VFSN-DAKFLFLCT-GNFVKVYSTATGECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccc-CCcEEEEee-CCEEEEEecchHhhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 4777 777766655 5689999999999999777 8999999999986555 57889999999999999875431000
Q ss_pred c---------c----cC-c----------cee-Eec-----------------cC-------CCeEEEEEecCCCEEEEE
Q 004969 538 M---------H----YG-A----------GTV-TFD-----------------EF-------DQLTSVHVNSMDELFLAS 568 (721)
Q Consensus 538 ~---------~----~~-~----------~~~-~~~-----------------~~-------~~V~sv~~sp~~~~lls~ 568 (721)
- . .. . ... .+. .. ..-.++..++.+.... .
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-i 177 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-I 177 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-E
Confidence 0 0 00 0 000 000 00 0012344434333333 3
Q ss_pred eCCCcEEEEECCCCcEEEEE---ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC--CCceeEEEecCCCCeE-E
Q 004969 569 GYSKNIALYDINSGRRLQVF---ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYTASSSKGNV-M 642 (721)
Q Consensus 569 g~Dg~IrlWDl~s~~~v~~l---~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~~~~~~~v-s 642 (721)
..+..+.+|+..++...... .-.|...+++.+++|.+ +++|+|..||.|.+|.--. ........++-|...+ +
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 34556788888765421111 11267778999999999 8999999999999996443 2222334445555555 9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCC--c-ccccccCeEEEEECCCCC
Q 004969 643 VCFSPDDHYLLGKGSGTSMFVQSLRGD--P-FRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 643 l~fSpdg~~Lasgs~Dg~I~VWDl~g~--~-l~~~~~~V~~v~fsP~~~ 688 (721)
++|+++|.+|++||..+.+-+|.+... . +.....+|..+.++|++.
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD 305 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC
Confidence 999999999999999999999998722 2 334478999999999984
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=6.8e-09 Score=117.06 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=126.7
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~ 552 (721)
.+|.+||...+. .+.+. .+...+.+.+|+ ++++.|+.++.+ ..|.+||+.+++... + ......
T Consensus 184 ~~l~i~D~~g~~-~~~lt--~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------l-~~~~g~ 249 (433)
T PRK04922 184 YALQVADSDGYN-PQTIL--RSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQREL---------V-ASFRGI 249 (433)
T ss_pred EEEEEECCCCCC-ceEee--cCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEE---------e-ccCCCC
Confidence 468999986443 34444 456789999998 688888877643 469999998765311 0 011223
Q ss_pred eEEEEEecCCCEEEEE-eCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCc--EEEEECCCC
Q 004969 553 LTSVHVNSMDELFLAS-GYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQD--VKLWDLRQK 626 (721)
Q Consensus 553 V~sv~~sp~~~~lls~-g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dgt--IrIWDlrs~ 626 (721)
..+..|+|++..++.+ +.+| .|++||+.+++... +.. +.......+|+|+| ..++.++ .+|. |.++|+.++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-HFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-CCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCC
Confidence 4577999999988654 4444 59999999887543 433 55556678999999 5555544 4554 666677666
Q ss_pred CceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
....+ +..+ ......+|+|||++|+..+.++ .|++||+.+...+.. ........|+|+++
T Consensus 327 ~~~~l-t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~ 391 (433)
T PRK04922 327 SAERL-TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGS 391 (433)
T ss_pred CeEEe-ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCC
Confidence 54332 2222 1222689999999998765443 689999875443322 22345568999994
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=4.3e-09 Score=120.59 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=122.1
Q ss_pred CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.|.+.++|+++|| ++.++|+|..||.|.+|.--. +.....-..+-|...|++++|+ .+|.+|+|||..|.+-+|.+
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEee
Confidence 3445589999999 999999999999999997432 2222211223688999999998 89999999999999999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----------ccCCCeEE
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----------MHKEHINV 598 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----------~h~~~V~s 598 (721)
.++++... ..-.++|..+.++|+++.......|..|.+....+.....++.+ ...+-.+.
T Consensus 281 ~T~~kqfL----------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 281 ETGKKQFL----------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred cCCCcccc----------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 99764221 12235689999999999999999999999998765544333332 12345667
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969 599 VKFSNHSPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~ 626 (721)
++++|.- +.++-.+..|.|.+||+-+.
T Consensus 351 ~~idpr~-~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 351 VSIDPRT-NSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEEcCCC-CceeecCCCceEEEEecccc
Confidence 8888844 56777777888888887653
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.7e-08 Score=113.60 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=124.6
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS---DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs---~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~ 552 (721)
..|.+||...+... .+. .+...+.+.+|+ ++++.|+..+ .+..|.+|++.+++.... ......
T Consensus 179 ~~l~~~d~dg~~~~-~lt--~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l----------~~~~~~ 244 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQV----------ASFPRH 244 (429)
T ss_pred eeEEEEcCCCCCCE-Eee--cCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEc----------cCCCCC
Confidence 47999998755443 333 445689999999 6888877654 345799999987653110 011123
Q ss_pred eEEEEEecCCCEEEEEe-CCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEE--ECCCC
Q 004969 553 LTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLW--DLRQK 626 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g-~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIW--Dlrs~ 626 (721)
+....|+|++..++... .+| .|++||+.+++..+... +...+....|+|+| +.++..+. ++..+|| |+.++
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCC
Confidence 45679999999888764 344 59999999887654433 44567889999999 55555444 4554555 66665
Q ss_pred CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccccc--cCeEEEEECCCCC
Q 004969 627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDFN--MSILAAYTRPSSK 688 (721)
Q Consensus 627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~~--~~V~~v~fsP~~~ 688 (721)
....+ ...+ .......|+|||++++..+.+ ..|++||+.+...+... .......|+|+++
T Consensus 322 ~~~~l-t~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~ 386 (429)
T PRK03629 322 APQRI-TWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGT 386 (429)
T ss_pred CeEEe-ecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCC
Confidence 43322 2221 122268899999999876543 35888998754433221 1234578999993
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=2.2e-08 Score=103.47 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=121.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA--GSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS--gs~DGtVrIWDi~~~ 531 (721)
.|+++.+.+ .+|++.- .+.|+||... +.+.++.+.........-+++ |..+..+++ |-.-|.|.|-|+...
T Consensus 96 ~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 96 EIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec--CCCCceEEEcCCCccceEEEEEhhhc
Confidence 588888888 6677665 5679999987 556666665444444555544 333333333 345699999999874
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN-IALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~-IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL 609 (721)
.. ........|...|.+++.+.+|..+++++..|+ |||||..+|+.+.++.. .....|++++|+|++ .++
T Consensus 170 ~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~L 241 (346)
T KOG2111|consen 170 KP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWL 241 (346)
T ss_pred Cc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-cEE
Confidence 43 123555678889999999999999999999887 99999999999999984 245679999999999 899
Q ss_pred EEEECCCcEEEEECCCC
Q 004969 610 ATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~ 626 (721)
|++|..|+++||.++..
T Consensus 242 avsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCeEEEEEeecC
Confidence 99999999999998763
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=131.11 Aligned_cols=113 Identities=22% Similarity=0.394 Sum_probs=99.1
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir 575 (721)
+|.++|.|+.|- ..+.++++|++|..|+||.+++..+ ..... .|.+.|+.++.+..+-.+++++.|..|+
T Consensus 188 gH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~-lAs~r--------Ghs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 188 GHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARC-LASCR--------GHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred hhhhheeeeeec-cccceEeecCccceeeeeeccchhh-hccCC--------CCccccchhccchhhhhhhhcccCceEE
Confidence 899999999996 8899999999999999999888654 23222 3456789999988888888899999999
Q ss_pred EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr 624 (721)
+|-+..+.++..+.+ |.+.|++++|+|-. +.+.||++++||.+
T Consensus 258 vWrl~~~~pvsvLrg-htgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRG-HTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred EEecCCCchHHHHhc-cccceeeeccCccc-----cCCCCCceEecccc
Confidence 999999999999998 99999999999853 77899999999988
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=1.6e-08 Score=112.86 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=128.6
Q ss_pred eEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCC--eEEEEEcC
Q 004969 456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNG--SLKLYDIR 529 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DG--tVrIWDi~ 529 (721)
+...+|+| ++++++.++.+ ..|++||+.+++..... .+.+.+.+++|+ ++++.|+ +.+.++ .|.+||+.
T Consensus 192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC
Confidence 66788999 89998887654 48999999988654433 334556778998 5776554 555554 58888887
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
++... .+. .+........|+|++..++.++. ++ .|.++|+.+++... +.. +...+..+.|+|+|
T Consensus 267 ~~~~~--~l~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~-~~~~~~~~~~spdg- 333 (417)
T TIGR02800 267 GKQLT--RLT--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF-RGGYNASPSWSPDG- 333 (417)
T ss_pred CCCEE--ECC--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CCCCccCeEECCCC-
Confidence 75431 111 11122345688999998887764 33 58888988776543 332 45567788999999
Q ss_pred cEEEEEECCC---cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCc
Q 004969 607 SIFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDP 670 (721)
Q Consensus 607 ~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~ 670 (721)
..++.++.++ .|.+||+.++....+ ..........|+|+|++|+.++.++ .+++.+..|..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVL---TDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEc---cCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 6777666665 788999987643222 2122222568999999998877654 45566665543
No 232
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.1e-08 Score=112.98 Aligned_cols=191 Identities=14% Similarity=0.206 Sum_probs=151.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEe------e-------------CCCCEEEEEeCCCeEE
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWL------K-------------KYPSKLIAGSDNGSLK 524 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fs------p-------------~d~~~LaSgs~DGtVr 524 (721)
...++|....||.++||+..+++....+....| .+..++..|. | .+...++-|...|.|-
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 568899999999999999999988777765444 3455666663 1 2334677788899999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
+|++..++.... ...-.|.+.|.++.++.+-..|.+++.|+.+..|+...+..++.+.. .+..+.+++.+||
T Consensus 84 ~ys~~~g~it~~-------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~sl~is~D 155 (541)
T KOG4547|consen 84 LYSVAGGEITAK-------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSSLCISPD 155 (541)
T ss_pred EEEecCCeEEEE-------EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccceEEEcCC
Confidence 999988765211 12234667899999999999999999999999999999999999986 7888999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-----CCEEEEE-eCCCcEEEEEcCC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-----DHYLLGK-GSGTSMFVQSLRG 668 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-----g~~Lasg-s~Dg~I~VWDl~g 668 (721)
| ..+++++ +.|++||+.+++. +.++.||.+++ ++.|--+ |.+++++ ..+..+.+|-+.+
T Consensus 156 ~-~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 G-KILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred C-CEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8 7888887 7899999999854 77889999999 7888776 6777654 4455678887763
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2e-08 Score=110.36 Aligned_cols=214 Identities=14% Similarity=0.245 Sum_probs=145.9
Q ss_pred CeEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC------
Q 004969 455 RPRQFEYHPS-ISCLMVF-----GTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN------ 520 (721)
Q Consensus 455 ~V~~lafsP~-dg~~Las-----Gs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D------ 520 (721)
.++.++++|. ....+|+ ++.-+.|+||....+..-..+...+ -.+.| .+.|++....+|+.++.|
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCc
Confidence 4788889984 3345554 4566789999876332222111100 11223 477875444455444432
Q ss_pred -----CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccC
Q 004969 521 -----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHK 593 (721)
Q Consensus 521 -----GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~ 593 (721)
.++++.++.+ ....+.+...++|.++.|+|++..|+++- .-..+.|||++ +.++..+. .
T Consensus 246 SYYGEq~Lyll~t~g----------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---e 311 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQG----------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---E 311 (566)
T ss_pred cccccceEEEEEecC----------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---C
Confidence 2556666553 44567777789999999999999888775 35789999998 88888875 4
Q ss_pred CCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------CCcEEEE
Q 004969 594 EHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------GTSMFVQ 664 (721)
Q Consensus 594 ~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------Dg~I~VW 664 (721)
++=+++-|+|.| ++++.+|.+ |.|.|||+.+.++ +..+.. ...+-+.|+|||++++|++. |+.++||
T Consensus 312 gpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~--i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 312 GPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL--IAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh--cccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 566788999999 787777764 7899999998654 333332 23335799999999998865 6899999
Q ss_pred EcCCCccccc--ccCeEEEEECCCC
Q 004969 665 SLRGDPFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 665 Dl~g~~l~~~--~~~V~~v~fsP~~ 687 (721)
++.|..+..- ......+.|.|-.
T Consensus 388 hytG~~l~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 388 HYTGSLLHEKMFKSELLQVEWRPFN 412 (566)
T ss_pred EecCceeehhhhhHhHhheeeeecC
Confidence 9998875432 3347778888654
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5.9e-08 Score=109.24 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=131.4
Q ss_pred CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCC--eEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNG--SLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DG--tVrIWDi 528 (721)
.+....|+| +++.|+..+.+ ..|.+||+.+|+...... ..+.+....|+ ++++.|+ +.+.+| .|.+||+
T Consensus 200 ~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 200 PILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred ceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEEC
Confidence 467889999 88888776643 369999999887644322 22345568898 6777665 555555 5778898
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.++... .+.. +........|+|++..++..+. + ..|.++|+.+++..+... .........|+|+|
T Consensus 275 ~~~~~~--~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~Spdg 342 (430)
T PRK00178 275 ASRQLS--RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRLSADG 342 (430)
T ss_pred CCCCeE--Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEECCCC
Confidence 875431 1111 1223456789999998887764 3 358888888777543322 22233457899999
Q ss_pred CcEEEEEE-CCC--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccc---ccc
Q 004969 606 PSIFATSS-FDQ--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRD---FNM 676 (721)
Q Consensus 606 ~~lLaSgs-~Dg--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~---~~~ 676 (721)
..++..+ .++ .|.+||+.++....+.. ........|+|||++++..+.+ ..++++++.|...+. ..+
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCCCCEEEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence 4555444 333 58889998875433221 1122256899999999876644 357777877654322 223
Q ss_pred CeEEEEECC
Q 004969 677 SILAAYTRP 685 (721)
Q Consensus 677 ~V~~v~fsP 685 (721)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 444455655
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5.1e-08 Score=110.42 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=127.8
Q ss_pred CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCe--EEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGS--LKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGt--VrIWDi 528 (721)
.+.+..|+| ||+.|+..+.+ ..|.+||+.+++....... .+.....+|+ ++++.|+ +.+.+|. |.+||+
T Consensus 219 ~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 219 PLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEEC
Confidence 466789999 88888876543 2688999988765433221 2234467898 6777665 4566775 667787
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.+++. ..+. .+.......+|+|++..++.++. + ..|.++|+.+++...... ........+|+|+|
T Consensus 294 ~tg~~--~~lt--------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~~~~~SpDG 361 (448)
T PRK04792 294 ATKAL--TRIT--------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNLGGSITPDG 361 (448)
T ss_pred CCCCe--EECc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCcCeeECCCC
Confidence 76542 1111 11223466789999998887764 3 357777888777544322 22233457899999
Q ss_pred CcEEEEEECCCc--EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEEcCCCccccc---ccC
Q 004969 606 PSIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-T--SMFVQSLRGDPFRDF---NMS 677 (721)
Q Consensus 606 ~~lLaSgs~Dgt--IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g--~I~VWDl~g~~l~~~---~~~ 677 (721)
..+++++..++. |.++|+.++....+ ..........|+|||++|+..+.+ + .+++++..|...+.. .+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~l---t~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~ 438 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVL---TSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGE 438 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEc---cCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCC
Confidence 544444444554 55578877654322 111112245899999988766543 3 377778876543322 234
Q ss_pred eEEEEECC
Q 004969 678 ILAAYTRP 685 (721)
Q Consensus 678 V~~v~fsP 685 (721)
+...+|+|
T Consensus 439 ~~~p~Wsp 446 (448)
T PRK04792 439 VKSPAWSP 446 (448)
T ss_pred cCCCccCC
Confidence 45556665
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=3.1e-08 Score=101.38 Aligned_cols=205 Identities=17% Similarity=0.249 Sum_probs=142.6
Q ss_pred CCeEEEEECCCCeEEE--EeecCCCCCCeEEEEEee--CCCC-EEEEEeCCCeEEEEEcCCCCCc--ccccccCcceeEe
Q 004969 475 DGEIVVVNHENENIVS--YIPSFGAMNSVLGLCWLK--KYPS-KLIAGSDNGSLKLYDIRHMPPS--IRGMHYGAGTVTF 547 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~--~l~~~~H~~~V~sl~fsp--~d~~-~LaSgs~DGtVrIWDi~~~~~~--~~~~~~~~~~~~~ 547 (721)
-|.+.+|++...+... +++... ...+..+.|.- .++. .++-+-.+|.|.++........ +..+....-.+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~-- 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV-- 121 (339)
T ss_pred ccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh--
Confidence 4678888887654433 232222 35677788862 3444 5666778899999987653321 11111111000
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 548 DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 548 ~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
....++.|++.+..++++-.+|.+.+-+...... ++..+. |.-.+....|+...++++.+|+.|+.+..||+|.
T Consensus 122 ---~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 122 ---VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred ---eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 1246788999999999998999999776665543 346676 9999999999998889999999999999999994
Q ss_pred CCceeEEE--ecCCCCeEEEEEec-CCCEEEEEeCCCcEEEEEcC--CCccccc--ccCeEEEEECCCC
Q 004969 626 KPIQPCYT--ASSSKGNVMVCFSP-DDHYLLGKGSGTSMFVQSLR--GDPFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 626 ~~~~~~~~--~~~~~~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~--g~~l~~~--~~~V~~v~fsP~~ 687 (721)
.+ ..++. ..++.+.+++.-+| .+.++++|+.|..|++||.| ++|+..- .+.|..+.+||.-
T Consensus 198 p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 198 PK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred Cc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 32 22322 22345555776665 68899999999999999999 6776543 5789999999975
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=1.3e-08 Score=118.53 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=145.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG 543 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~ 543 (721)
+...++.++.+..+.+||...+.....++...-.--..++-+- ..+.-++++|+--+.|.+|+.......
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------- 168 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP--------- 168 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc---------
Confidence 5578899999999999999887776665421100011111111 134558899999999999999843321
Q ss_pred eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969 544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ-VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (721)
Q Consensus 544 ~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~-~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD 622 (721)
.....|.+.|.++.++.++.++++.++|.++|+|++.+++... +.-+ |...|..+.|.|. .++|++.|-+.++|+
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n---~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN---RIITVGEDCTCRVWG 244 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc---eeEEeccceEEEEEe
Confidence 2355677889999999999999999999999999999988766 3334 9999999999986 799999999999997
Q ss_pred CCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969 623 LRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR 672 (721)
Q Consensus 623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~ 672 (721)
....... .+..+...+...++..++....+|++.|+.+++|++.++...
T Consensus 245 ~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 245 VNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred cccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 7654332 332222233448999999999999999999999998765433
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.98 E-value=9e-08 Score=106.89 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=125.7
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
...|.++|...+.. ..+. .+...+...+|+ +++++|+.++.+ ..|.+||+.+++... ......
T Consensus 169 ~~~l~~~d~~g~~~-~~l~--~~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------~~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANP-QTIT--RSREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREK----------VASFPG 234 (417)
T ss_pred cceEEEEcCCCCCC-EEee--cCCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------eecCCC
Confidence 34688888764433 3343 455678899998 688888877644 479999998864311 111223
Q ss_pred CeEEEEEecCCCEEEEEe-CC--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEECCC
Q 004969 552 QLTSVHVNSMDELFLASG-YS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQ 625 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g-~D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dg--tIrIWDlrs 625 (721)
.+.+.+|+|++..++.+. .+ ..|++||+.++.... +.. +........|+|+| ..++..+ .++ .|.+||+.+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN-GPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCC-CCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCC
Confidence 456788999998887654 33 459999998776543 332 44555677899999 5555444 344 577888877
Q ss_pred CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
++...+. . .........|+|+|++++.++.++ .|++||+.+...+.. ........|+|+++
T Consensus 312 ~~~~~l~-~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~ 377 (417)
T TIGR02800 312 GEVRRLT-F-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGR 377 (417)
T ss_pred CCEEEee-c-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCC
Confidence 6543222 1 222233689999999999888765 788999875432222 12234458999983
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=5.9e-09 Score=121.29 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=124.4
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~ 538 (721)
+-+++ +.-++++|+.-|.|.+|+......-..+. ||.+.|.++.|+ .++.+++++|+|.++|+|++++.+..
T Consensus 139 ~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~--GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~---- 210 (967)
T KOG0974|consen 139 IGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK--GHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVL---- 210 (967)
T ss_pred EeccC-cEEEEEeccccccEEEEeccccCCcceec--ccCCceEEEEEc-cCCcEEEEEecCcceeeeeccccccc----
Confidence 34455 66899999999999999987332222233 999999999998 89999999999999999999996652
Q ss_pred ccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI 618 (721)
....|.|...|..+.++|. .++++|.|-+.++|+.. ++.+..+.+.....+..++..+.. .+.+|++.|+.+
T Consensus 211 ----~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 211 ----GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTL 282 (967)
T ss_pred ----CcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcch
Confidence 2567888889999999876 99999999999999766 555557776234679999999887 799999999999
Q ss_pred EEEECCC
Q 004969 619 KLWDLRQ 625 (721)
Q Consensus 619 rIWDlrs 625 (721)
++||+..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999865
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=2.7e-09 Score=128.88 Aligned_cols=184 Identities=16% Similarity=0.286 Sum_probs=142.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|+++.-|| ...+.++|+.||.|++|....++.+..++..|. ..|+.+.|+ ..|+.+..+..||.+.+|.+.. ++
T Consensus 2210 ~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~p-k~- 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN-HQGNKFGIVDGDGDLSLWQASP-KP- 2284 (2439)
T ss_pred ceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc-ccCCceeeeccCCceeecccCC-cc-
Confidence 378888999 667788999999999999999998888887565 889999998 7889999999999999999983 11
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
+.... .|......+.|-. ..++++| .++.+.+||..-. ..+. . .|.+.++++++-|.. .+
T Consensus 2285 ~~s~q--------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2285 YTSWQ--------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred eeccc--------cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcCcc-eE
Confidence 11111 1233455666633 5566665 3688999997632 2333 3 499999999999998 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+++||.+|.|++||++..+....+ +. ++ ...++++|+..|.++||++.+
T Consensus 2351 lisggr~G~v~l~D~rqrql~h~~--~~--------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTF--QA--------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHHHHh--hh--------hh-hhheeeccCcccceEEEEccc
Confidence 999999999999999987553322 21 44 678899999999999999984
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2.1e-08 Score=110.08 Aligned_cols=204 Identities=14% Similarity=0.196 Sum_probs=145.5
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
+.+.++.....+++.| ....|+-++++.|+.+..+.. ..+.++++..+ +...+|++|+.+|.|-.||.+..... .
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~--~~~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv-~ 211 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFET--DSGELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRV-G 211 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEcccccccccccc--ccccceeeeec-CccceEEecccCceEEEecchhhhhh-e
Confidence 3456665344555544 455799999999999888873 34789999988 56678999999999999999875431 1
Q ss_pred ccccCcceeE--e-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 537 GMHYGAGTVT--F-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 537 ~~~~~~~~~~--~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.+.....+.. . .....|+++.|+.+|-.+++|..+|.|.|||+++.+++..-..+...+|..+.|.+.+..--+...
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 1111111000 0 112349999998778889999999999999999999887766445678999999877432333344
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
....++|||-.+++. ...+........+++-|++.+++++-.++.+..|=+.
T Consensus 292 Dk~~~kiWd~~~Gk~--~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 292 DKRILKIWDECTGKP--MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred chHHhhhcccccCCc--eeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 557799999999855 3344444444478999999999999988887766554
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=8.7e-08 Score=105.38 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=147.3
Q ss_pred eEEEEEeCCCCCE-EEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCL-MVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~-LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+.|..+| ||.+ +|+|...-.|++||+..-..... .|. ..+..+.....+-..++---.|.+|-+...-+.
T Consensus 54 st~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFE----RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 54 STRIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFE----RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred cceeEecC-CCcEEEEecccCCceEEEEcccceeeee----ecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 46788999 6655 67788899999999986544322 222 233333332244445555566777765443321
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.....-+..-.++++|....-++.+|....|+-+++..|+.+..|.. ..+.++++..++-. .++++|+
T Consensus 127 ----------hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~h-gLla~Gt 194 (703)
T KOG2321|consen 127 ----------HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEH-GLLACGT 194 (703)
T ss_pred ----------eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCcc-ceEEecc
Confidence 11111122335677777777788888888899999999999998885 66899999999988 6999999
Q ss_pred CCCcEEEEECCCCCceeEEEec----CCCC------eEEEEEecCCCEEEEEeCCCcEEEEEcCC-Cc--cccc--ccCe
Q 004969 614 FDQDVKLWDLRQKPIQPCYTAS----SSKG------NVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DP--FRDF--NMSI 678 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~----~~~~------~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~--l~~~--~~~V 678 (721)
.+|.|..||.|+.......... .+.+ +.++.|+.+|-.+++|+.+|.+.|||++. .| ++.| ..+|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 9999999999986443322221 1111 33899999999999999999999999993 34 3344 4588
Q ss_pred EEEEECCC
Q 004969 679 LAAYTRPS 686 (721)
Q Consensus 679 ~~v~fsP~ 686 (721)
..+.|.+.
T Consensus 275 ~~l~~~~~ 282 (703)
T KOG2321|consen 275 KKLDWQDT 282 (703)
T ss_pred eeeccccc
Confidence 88888776
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=3.1e-09 Score=114.08 Aligned_cols=209 Identities=15% Similarity=0.254 Sum_probs=152.7
Q ss_pred ceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969 436 CLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI 515 (721)
Q Consensus 436 ~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La 515 (721)
+..-+...|...+.......|..+.|-| ..-+|++++..|-++--|+.+|+.+..+. .-.+.+..++-+ |.+..+-
T Consensus 192 y~yvYD~~GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qN-P~NaVih 267 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQN-PYNAVIH 267 (545)
T ss_pred eEEEecCCCcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcC-CccceEE
Confidence 3333444444444445556788999999 77899999999999999999999998876 335778888877 5667888
Q ss_pred EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC
Q 004969 516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH 595 (721)
Q Consensus 516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~ 595 (721)
+|...|+|.+|......+.++ ...|.++|.++++++.|.+++++|.|..++|||+++-..+.++.. ..+
T Consensus 268 ~GhsnGtVSlWSP~skePLvK---------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~ 336 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVK---------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHP 336 (545)
T ss_pred EcCCCceEEecCCCCcchHHH---------HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCC
Confidence 999999999999988665332 234668899999999999999999999999999998877766652 456
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECC-CC--CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969 596 INVVKFSNHSPSIFATSSFDQDVKLWDLR-QK--PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF 662 (721)
Q Consensus 596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~--~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~ 662 (721)
...+++|..| ++ +.+....|.||.=. .+ .....+..+...+.| .+.|.|-...|-.|...|.-.
T Consensus 337 a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 337 ASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cccccccccc--ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 7788998776 44 44555679999532 21 111111111222345 799999888888877666443
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=3.1e-08 Score=103.13 Aligned_cols=209 Identities=18% Similarity=0.259 Sum_probs=137.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecC----------CCCCCeEEEEEeeCC-CCEEEEEeC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSF----------GAMNSVLGLCWLKKY-PSKLIAGSD 519 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~----------~H~~~V~sl~fsp~d-~~~LaSgs~ 519 (721)
+.++.|.. .|.+||+|..+|.|.++.-+... ....++.+ .-...|..+.|.++. ...++..+.
T Consensus 28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 78999999 99999999999999999754322 22223211 113468889998543 346777789
Q ss_pred CCeEEEEEcCCCCCccc-------------------ccccCc------cee--EeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969 520 NGSLKLYDIRHMPPSIR-------------------GMHYGA------GTV--TFDEFDQLTSVHVNSMDELFLASGYSK 572 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~-------------------~~~~~~------~~~--~~~~~~~V~sv~~sp~~~~lls~g~Dg 572 (721)
|.+|++|.+........ .+..+. +.. .-.|.-.|.++.+++++..++++ +|-
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cce
Confidence 99999999875433210 000000 011 11245569999998888877764 578
Q ss_pred cEEEEECCCCcE---EEEEcc----ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----eeEEEecCC----
Q 004969 573 NIALYDINSGRR---LQVFAD----MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTASSS---- 637 (721)
Q Consensus 573 ~IrlWDl~s~~~---v~~l~~----~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----~~~~~~~~~---- 637 (721)
.|-+|.+.-... +.-++. .-..-|++..|+|..-++++-.+..|+||+-|+|.... ..++..+..
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 899999873221 222221 02346889999998878899999999999999995321 111211111
Q ss_pred ---CC---eE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 638 ---KG---NV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 638 ---~~---~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.. .+ .+.|+++|+|+++-. --+|++||+.
T Consensus 266 sffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN 301 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc
Confidence 11 12 589999999999654 4689999995
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=5.9e-07 Score=99.11 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=127.1
Q ss_pred CEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 467 CLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 467 ~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
+++ ++-..+|.|.|.|..+.+.+..+.. ....-..+.|+ ++++++++++.||.|.++|+.+.+. ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~----------v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKV----------VA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSE----------EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEec-CCCCEEEEEcCCCeEEEEECCcccE----------EE
Confidence 444 4556789999999999999999874 22223446666 7899999999999999999999663 22
Q ss_pred EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccc------cCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADM------HKEHINVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~------h~~~V~sI~fsPdg~~lLaSgs~DgtI 618 (721)
.........+++++++|.+++++. ..+.+.++|.++.+.++.+... ....+.+|..+|..+.++++--.-+.|
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 222233457899999999999887 4899999999999999887631 234678888888884444444445778
Q ss_pred EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 004969 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGD 669 (721)
Q Consensus 619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~ 669 (721)
-+-|..................-...|+|+++|++++ ..++.|-++|....
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 7888777544434444444445578999999998765 45678888987743
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.86 E-value=3.4e-07 Score=94.97 Aligned_cols=217 Identities=11% Similarity=0.109 Sum_probs=137.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
|.-+.|..+....+.....|+.|.+|++...+-...+. ....++.+++|+|.....|.+..-|-.|.+|.+.+.+...
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 55688998444455566788999999999888777776 5568899999995433677777889999999999855421
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------------------------------------CCcEEEEEC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------------------------------------SKNIALYDI 579 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------------------------------------Dg~IrlWDl 579 (721)
.... +..+..++|+|+|+..+..+. +..+.+||-
T Consensus 129 ~~~p----------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 129 LPHP----------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred eccc----------ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence 1111 112344555555544333321 112334443
Q ss_pred CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-------------------------------
Q 004969 580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI------------------------------- 628 (721)
Q Consensus 580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~------------------------------- 628 (721)
--.-.+..+. .+-.+..++|+|-+ ++++.|+.|+.+||-+--+.+.
T Consensus 199 ~Leykv~aYe--~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 199 VLEYKVYAYE--RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred hhhheeeeee--eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 2222222222 33568889999988 8999999999988754221000
Q ss_pred ---------------------------eeEEEec------CCCCeE-EEEEecCCCEEEEEeCC--CcEEEEEcCCCccc
Q 004969 629 ---------------------------QPCYTAS------SSKGNV-MVCFSPDDHYLLGKGSG--TSMFVQSLRGDPFR 672 (721)
Q Consensus 629 ---------------------------~~~~~~~------~~~~~v-sl~fSpdg~~Lasgs~D--g~I~VWDl~g~~l~ 672 (721)
+.+..+. .....+ .++|++|..|+++-... +.+.+||++...+.
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence 0000000 001112 58999999999987543 57899999844332
Q ss_pred ---ccccCeEEEEECCCC
Q 004969 673 ---DFNMSILAAYTRPSS 687 (721)
Q Consensus 673 ---~~~~~V~~v~fsP~~ 687 (721)
....+|....|+|..
T Consensus 356 avLiQk~piraf~WdP~~ 373 (447)
T KOG4497|consen 356 AVLIQKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhccceeEEEeCCCC
Confidence 225689999999998
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=6.5e-07 Score=100.84 Aligned_cols=216 Identities=11% Similarity=0.044 Sum_probs=125.4
Q ss_pred eEEEEEeCCCCCE--E-EEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEE
Q 004969 456 PRQFEYHPSISCL--M-VFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKL 525 (721)
Q Consensus 456 V~~lafsP~dg~~--L-asGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrI 525 (721)
..+-.|+| ||+. + ++...+ ..|.+.++.+|+...... ..+.....+|+ ++++.|+..+. +..+.+
T Consensus 187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~~g~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---LQGNQLMPTFS-PRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeec---CCCCccceEEC-CCCCEEEEEECCCCCcceeEEE
Confidence 34568999 7764 2 244444 367788888776544332 23345567898 68877766542 334555
Q ss_pred EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEE--ECCC-CcEEEEEccccCCCeEEEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALY--DINS-GRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlW--Dl~s-~~~v~~l~~~h~~~V~sI~f 601 (721)
|++..+... ....+...........+|+|+|..++..+. +|...+| ++.. +.....+.. +...+....|
T Consensus 262 ~~~~~g~~g------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~w 334 (428)
T PRK01029 262 FSLETGAIG------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAW 334 (428)
T ss_pred eecccCCCC------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeE
Confidence 776653110 000111111123456799999998887763 5654555 4432 233444443 4456778899
Q ss_pred cCCCCcEEEEEEC-C--CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCCccccc-
Q 004969 602 SNHSPSIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGDPFRDF- 674 (721)
Q Consensus 602 sPdg~~lLaSgs~-D--gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~~l~~~- 674 (721)
+|+| +.++..+. + ..|.+||+.+++...+.. .........|+|||++|+..+. ...|++|++.+......
T Consensus 335 SPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999 55554433 3 369999999886543321 1112236899999998875443 34688889875432222
Q ss_pred --ccCeEEEEECCC
Q 004969 675 --NMSILAAYTRPS 686 (721)
Q Consensus 675 --~~~V~~v~fsP~ 686 (721)
.+.+...+|+|.
T Consensus 412 ~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 412 IGSGEKRFPSWGAF 425 (428)
T ss_pred cCCCcccCceecCC
Confidence 233455666664
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=5.8e-07 Score=101.23 Aligned_cols=194 Identities=9% Similarity=0.008 Sum_probs=122.9
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (721)
Q Consensus 477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V 553 (721)
.|.++|...+.. ..+. .+...+....|+ ++++.|+..+.+ ..|.+||+.++.... +. .....+
T Consensus 180 ~l~~~d~~g~~~-~~l~--~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~--------~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL--QSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--IT--------NFEGLN 245 (430)
T ss_pred EEEEECCCCCCc-eEEe--cCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEE--cc--------CCCCCc
Confidence 577888875543 3333 455788999999 678888766543 368899998765311 11 111234
Q ss_pred EEEEEecCCCEEEEEe-CCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCc
Q 004969 554 TSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI 628 (721)
Q Consensus 554 ~sv~~sp~~~~lls~g-~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~ 628 (721)
....|+|++..++... .+| .|++||+.+++... +.. +........|+|+|..++++...+| .|.+||+.+++.
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 5688999999887544 344 68889999876543 443 5555667899999944444544444 577778877754
Q ss_pred eeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
..+ ...+ .......|+|||++++..+.++ .|.+||+.+...+.. ........|+|+++
T Consensus 324 ~~l-t~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~ 386 (430)
T PRK00178 324 ERV-TFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGT 386 (430)
T ss_pred EEe-ecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCC
Confidence 333 2222 1222578999999998776433 578889875433322 11223458999994
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.83 E-value=6.6e-08 Score=99.02 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=132.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
..++.|++ .+.-++++-.+|.+.+-+...+.........+|.-.++-.+|+..+++.+.+||+||.+..||++..+.-
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~- 201 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF- 201 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-
Confidence 35788999 7788999999999997666555554422234899999999999888999999999999999999943320
Q ss_pred cccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.......|...|.++.-+|. ..++++|+.|-.|++||.| .++++..-. -.+.|..+.++|.....++.++
T Consensus 202 ------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 202 ------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHH
Confidence 01112345667888887765 4577888889999999999 577776554 5689999999997633344444
Q ss_pred CCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEe-CCCcEE-EE
Q 004969 614 FDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKG-SGTSMF-VQ 664 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs-~Dg~I~-VW 664 (721)
.-.-.+|-+...+... .......|..-. ...|.....+++|++ .|..++ +|
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 4444677777665332 111222222222 233433334566644 355544 55
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.82 E-value=5e-08 Score=100.99 Aligned_cols=184 Identities=13% Similarity=0.180 Sum_probs=126.1
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE-EEEEeCCCeEEEEEcCCCCCcccc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~-LaSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
..|+| +|+++|+.+.- .+.|-|.++-+..+.+.. -+.|.-+.|. .+..+ |.....|+.|.+|++...+-
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew---- 83 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEW---- 83 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeee-ccceeeeeeeeccceEEEEEeeccee----
Confidence 56899 99999999866 788888877655443321 3567778897 55544 45567889999999987442
Q ss_pred cccCcceeEe-ccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-
Q 004969 538 MHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF- 614 (721)
Q Consensus 538 ~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~- 614 (721)
.... .+..++.+++|+|+|+.++..+. |-.|.+|.+.+.+....-. .+..+..++|+|+| ++.+.++.
T Consensus 84 ------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg-~f~ai~sRr 154 (447)
T KOG4497|consen 84 ------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDG-QFCAILSRR 154 (447)
T ss_pred ------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCC-ceeeeeecc
Confidence 1122 23456899999999988887775 8899999999876554322 33456788999998 56555442
Q ss_pred -----------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC
Q 004969 615 -----------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT 659 (721)
Q Consensus 615 -----------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg 659 (721)
+..+-+||.--. ..++..+-..+.-.++|+|.+++|++|+.|+
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccceeEEEeccccceEEeeccch
Confidence 122444543322 1122223334455789999999999999999
Q ss_pred cEEE
Q 004969 660 SMFV 663 (721)
Q Consensus 660 ~I~V 663 (721)
.++|
T Consensus 233 ~lrv 236 (447)
T KOG4497|consen 233 MLRV 236 (447)
T ss_pred hhhh
Confidence 8876
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=1.1e-06 Score=97.09 Aligned_cols=226 Identities=12% Similarity=0.169 Sum_probs=136.9
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCCCccc
Q 004969 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~~~~~~~ 536 (721)
.+.|+| |++++.+.+.||.|.++|+.+++.+..++. .....+++++ +++++++++. .++.+.++|.++.+.. +
T Consensus 41 ~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v-~ 114 (369)
T PF02239_consen 41 GLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPV-K 114 (369)
T ss_dssp EEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EE-E
T ss_pred EEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccce-e
Confidence 467899 999999999999999999999999999874 2456789998 7888887665 6899999999986542 1
Q ss_pred ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcEEE--EEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQ--VFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~v~--~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
....... ..-.....+.++..++..+.++..-.| +.|.+.|....+.+. .+. .........|+|++.+++++..
T Consensus 115 ~I~~~~~-~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 115 TIPTGGM-PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEE--EE--TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEEG
T ss_pred ecccccc-cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCcccceeeeccc
Confidence 1110000 000022346777777888877777664 889888987765443 332 4566778999999944455555
Q ss_pred CCCcEEEEECCCCCceeEE-----------------------------------------------------EecCCCCe
Q 004969 614 FDQDVKLWDLRQKPIQPCY-----------------------------------------------------TASSSKGN 640 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~-----------------------------------------------------~~~~~~~~ 640 (721)
....|-++|..+++..... ++....+.
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 6677888887764321110 00011112
Q ss_pred EEEEEecCCCEEEEE----eCCCcEEEEEcCCCc-cccc----ccCeEEEEECCCCCcccc
Q 004969 641 VMVCFSPDDHYLLGK----GSGTSMFVQSLRGDP-FRDF----NMSILAAYTRPSSKSEIV 692 (721)
Q Consensus 641 vsl~fSpdg~~Lasg----s~Dg~I~VWDl~g~~-l~~~----~~~V~~v~fsP~~~~~~v 692 (721)
.-+..+|+++++.+. ...+.|.++|.+.-. .+.+ ...+..+.|+|+|+...+
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 345779999999887 445789999988322 2222 235999999999964333
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.79 E-value=4.8e-06 Score=91.17 Aligned_cols=229 Identities=13% Similarity=0.125 Sum_probs=145.0
Q ss_pred eEEEEEeCCCCCEEEEEEC----CCeEEEEECCCC--eE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTL----DGEIVVVNHENE--NI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY 526 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~----DG~I~IWdl~tg--~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIW 526 (721)
+.-++++| ++++|.+... +|.|..|.+... +. +..... .......++.. +++++|+++. .+|+|.++
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~-~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVD-PDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEEC-TTSSEEEEEETTTTEEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEe-cCCCEEEEEEccCCeEEEE
Confidence 66789999 8888888776 579999988753 33 333321 23455678887 6788877776 58999999
Q ss_pred EcCCCCCcccc--cccCccee---EeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCc--EE--EEEccccCCCe
Q 004969 527 DIRHMPPSIRG--MHYGAGTV---TFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGR--RL--QVFADMHKEHI 596 (721)
Q Consensus 527 Di~~~~~~~~~--~~~~~~~~---~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~--~v--~~l~~~h~~~V 596 (721)
++......... ...+.+.. ..+......++.++|+++++++... ...|++|++.... .. ..+........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 99874221111 00000000 0012234789999999999998874 4579999998654 32 23332356778
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECC--CCCceeEEEec-------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969 597 NVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQPCYTAS-------SSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL 666 (721)
Q Consensus 597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~~~~~~~-------~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl 666 (721)
..+.|+|++....++...+++|.+|++. ++....+.... +......++++|||++|+++. ..+.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 9999999996666677778999999988 44333322221 111334799999999998876 4668999999
Q ss_pred CCC--ccccc------ccCeEEEEECCCCC
Q 004969 667 RGD--PFRDF------NMSILAAYTRPSSK 688 (721)
Q Consensus 667 ~g~--~l~~~------~~~V~~v~fsP~~~ 688 (721)
... .+... ......++++|+++
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence 522 22211 23478899999993
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.6e-06 Score=98.37 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=118.5
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (721)
Q Consensus 477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V 553 (721)
.|.++|...... +.+. .+...+.+..|+ ++++.|+..+. ++ .|.+||+.+++.... . ......
T Consensus 199 ~l~i~d~dG~~~-~~l~--~~~~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--t--------~~~g~~ 264 (448)
T PRK04792 199 QLMIADYDGYNE-QMLL--RSPEPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKV--T--------SFPGIN 264 (448)
T ss_pred EEEEEeCCCCCc-eEee--cCCCcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEe--c--------CCCCCc
Confidence 677778764433 3333 445688899998 67887776654 33 588889887653110 0 011223
Q ss_pred EEEEEecCCCEEEEE-eCCCc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCc
Q 004969 554 TSVHVNSMDELFLAS-GYSKN--IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI 628 (721)
Q Consensus 554 ~sv~~sp~~~~lls~-g~Dg~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~ 628 (721)
....|+|++..++.+ ..++. |.+||+.+++... +.. +.......+|+|+|..+++++..++ .|.++|+.+++.
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 467899999988765 44554 8888998776543 332 5556677899999954444544444 466678877654
Q ss_pred eeEEEecCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCcccccc--cCeEEEEECCCCC
Q 004969 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS-GT--SMFVQSLRGDPFRDFN--MSILAAYTRPSSK 688 (721)
Q Consensus 629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~-Dg--~I~VWDl~g~~l~~~~--~~V~~v~fsP~~~ 688 (721)
..+ +..+.. ....+|+|||++|+..+. ++ .|.++|+.+....... .......|+|+++
T Consensus 343 ~~L-t~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~ 405 (448)
T PRK04792 343 SRL-TFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGT 405 (448)
T ss_pred EEE-ecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCC
Confidence 332 222222 235789999999987654 33 4556777644332221 1122347999994
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.74 E-value=2.1e-06 Score=106.36 Aligned_cols=211 Identities=15% Similarity=0.186 Sum_probs=137.8
Q ss_pred CeEEEEEeCCCCCE-EEEEECCCeEEEEECCCCeEEEEeecCCC---------------CCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPSISCL-MVFGTLDGEIVVVNHENENIVSYIPSFGA---------------MNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~-LasGs~DG~I~IWdl~tg~~i~~l~~~~H---------------~~~V~sl~fsp~d~~~LaSgs 518 (721)
++..+++++ +++. +++-...+.|+++|..++.. .++...+. -...++++++|.++..+++.+
T Consensus 625 ~P~GIavd~-~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 625 RPQGLAYNA-KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCcEEEEeC-CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 588999999 6664 44455567899999987653 33322111 123468899855677788888
Q ss_pred CCCeEEEEEcCCCCCcccccccCc----c-eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEcc--
Q 004969 519 DNGSLKLYDIRHMPPSIRGMHYGA----G-TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFAD-- 590 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~~~~~~~~----~-~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~-- 590 (721)
.++.|++||..++......-.+.. . ............++++|+++.++++. .++.|++||+.++.......+
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 899999999877543111000000 0 00000113357899999998666555 578999999987653211100
Q ss_pred ----------c--------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC-------------CC
Q 004969 591 ----------M--------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-------------KG 639 (721)
Q Consensus 591 ----------~--------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-------------~~ 639 (721)
. .-....+++++++| .++++-+.++.|++||..++....+.. .+. ..
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCC
Confidence 0 01134688999999 788888999999999998875432221 110 12
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
+..++++++|+.+++-+.++.|++||+...
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 447899999998888888999999999743
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=2e-07 Score=104.39 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=159.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-------------EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-------------SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-------------~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG 521 (721)
...|++|+. ...++|+|+.||.++|..+.+...- ......||...|.-+.|+ .....|-|...+|
T Consensus 16 kL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 16 KLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSG 93 (1189)
T ss_pred eEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCc
Confidence 478999999 8899999999999999987643210 011124999999999998 6778898999999
Q ss_pred eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEccccCCCeEEE
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ--VFADMHKEHINVV 599 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~--~l~~~h~~~V~sI 599 (721)
.|.+|-+-.+...-. .+.-..++.|.+++|+.+|..+...-.||.|.+=.+. |..++ .+++ .....+
T Consensus 94 lIiVWmlykgsW~EE-------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg---~~l~hv 162 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEE-------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG---QLLAHV 162 (1189)
T ss_pred eEEEEeeecccHHHH-------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch---heccce
Confidence 999999987654211 1122234558999999999999999899988776665 33332 2332 234468
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCCCc-----eeEEEecCC----CCeE-EEEEe--------cCCCEEEEEeCCCcE
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPI-----QPCYTASSS----KGNV-MVCFS--------PDDHYLLGKGSGTSM 661 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-----~~~~~~~~~----~~~v-sl~fS--------pdg~~Lasgs~Dg~I 661 (721)
.|++|. ..++.+-..|.+++||....-. .......+. ...+ .+.|. ||...++++-.+|.+
T Consensus 163 ~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 163 LWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred eecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 899998 6777777889999999865311 111111110 0111 34442 588899999999988
Q ss_pred EEEEcCCCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 662 FVQSLRGDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 662 ~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+-.-..++ +....+.+..+.|+|+| .+||.||.+
T Consensus 242 QiMR~eND~~Pvv~dtgm~~vgakWnh~G-------~vLAvcG~~ 279 (1189)
T KOG2041|consen 242 QIMRSENDPEPVVVDTGMKIVGAKWNHNG-------AVLAVCGND 279 (1189)
T ss_pred hhhhhcCCCCCeEEecccEeecceecCCC-------cEEEEccCc
Confidence 776544332 23335688999999999 999999987
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=2.1e-07 Score=97.09 Aligned_cols=205 Identities=16% Similarity=0.222 Sum_probs=133.6
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEE-----------------------------------EEeecCCCC
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIV-----------------------------------SYIPSFGAM 498 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i-----------------------------------~~l~~~~H~ 498 (721)
.|..+.|.++ +...++..+.|.+|++|-+...... +.+ ..+|.
T Consensus 86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~-aNaHt 164 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY-ANAHT 164 (433)
T ss_pred hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec-cccce
Confidence 3677888884 4456778889999999987532110 111 13788
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC-EEEEEeCCCcEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE-LFLASGYSKNIAL 576 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~-~lls~g~Dg~Irl 576 (721)
-.|.++.++ .+...++++ +|=.|.+|+++-.......+.-.+ ..+. -..-|++..|||... .|+.+++.|+|++
T Consensus 165 yhiNSIS~N-sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP--~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 165 YHINSISVN-SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKP--ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred eEeeeeeec-CccceEeec-cceeeeeccccccCCceeEEEccc--cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 889999998 677777775 567899999987544222111000 0000 112378889999764 5566677899999
Q ss_pred EECCCCcE----EEEEc-----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC---
Q 004969 577 YDINSGRR----LQVFA-----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--- 638 (721)
Q Consensus 577 WDl~s~~~----v~~l~-----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--- 638 (721)
-|++.... .+.|. ..--..|..+.|++.| +++++-.. -+|++||+.... .++.+.+.|.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLR 317 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccC-CcceEEeehHhHH
Confidence 99995321 11111 0123468889999999 78876543 689999995321 2232222221
Q ss_pred -------------CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 639 -------------GNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 639 -------------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
....++|+.++.+++||+..+..+++++.
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 11258999999999999999999999954
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.72 E-value=6.8e-06 Score=89.99 Aligned_cols=207 Identities=11% Similarity=0.163 Sum_probs=136.2
Q ss_pred CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCC-CeEEEE---eec--------CCCCCCeEEEEEeeCCCCEEEEEe-CC
Q 004969 455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHEN-ENIVSY---IPS--------FGAMNSVLGLCWLKKYPSKLIAGS-DN 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~t-g~~i~~---l~~--------~~H~~~V~sl~fsp~d~~~LaSgs-~D 520 (721)
.+..++++| ++++++++.. +|.|.++++.. |..... +.. ........++.|+ ++++++++.. ..
T Consensus 88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTT
T ss_pred CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCC
Confidence 366799999 8888888764 89999999986 444332 211 0123457889998 6788777654 34
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCcE--EEEEcc---cc
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN--SGRR--LQVFAD---MH 592 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~--s~~~--v~~l~~---~h 592 (721)
..|.+|++......+.. ...+.......-..+.|+|++..+++... +++|.++++. ++.. +..... ..
T Consensus 166 D~v~~~~~~~~~~~l~~----~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTP----VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TEEEEEEE-TTS-TEEE----EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred CEEEEEEEeCCCceEEE----eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 58999999875532211 11223333345689999999999988875 7889999998 4432 222221 11
Q ss_pred --CCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--CCCceeEEEecC-CCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969 593 --KEHINVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL 666 (721)
Q Consensus 593 --~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl 666 (721)
......|+++|+|..++++....++|-+|++. ++....+..... ...+..++++|+|++|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 22678999999995556666678899999993 345544444433 33466899999999999887 5668999987
Q ss_pred C
Q 004969 667 R 667 (721)
Q Consensus 667 ~ 667 (721)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.5e-07 Score=98.85 Aligned_cols=148 Identities=10% Similarity=0.209 Sum_probs=124.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+...++-|...|.|.+|++..|+....+...+|.+.|.++.|+ .+...|.|++.|+.+..|+....... .
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~---------~ 138 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVII---------R 138 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceee---------e
Confidence 5678899999999999999999999999877999999999997 77889999999999999999885431 1
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC-----CCcEEEEEECCCcEE
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH-----SPSIFATSSFDQDVK 619 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd-----g~~lLaSgs~DgtIr 619 (721)
........+.+++++|++..+++++ +.|++||+++++.+..|.| |.++|++++|--. |.+++.+...+..+.
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeecccccccee
Confidence 1112234578999999988888877 6899999999999999998 9999999999877 545666667777888
Q ss_pred EEECCC
Q 004969 620 LWDLRQ 625 (721)
Q Consensus 620 IWDlrs 625 (721)
+|-++.
T Consensus 216 ~w~v~~ 221 (541)
T KOG4547|consen 216 VWVVEK 221 (541)
T ss_pred EEEEEc
Confidence 998765
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.71 E-value=7.5e-08 Score=108.21 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=119.9
Q ss_pred eEEEEEeCC--CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPS--ISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
|-.+.|+|+ ....+++ ...-.-.+|++.... ..-.+-.+||..+|+++.|+|+.+..+++++-|..|..||++...
T Consensus 70 vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEe-cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 445667763 2334444 444456789886322 112233359999999999999999999999999999999999854
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
..+... ..-......|+|+-.++.+++.+..+.|++||.+.| .++..+++ |...|+.+.|+......+.+
T Consensus 149 ~p~ys~--------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~~s~~~s 219 (1081)
T KOG0309|consen 149 RPFYST--------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFKYSEIMS 219 (1081)
T ss_pred cceeee--------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-cceeeehHHHhhhhhhhhcc
Confidence 422111 112234678899999999999999999999999975 56777887 99999999998765567889
Q ss_pred EECCCcEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQ 625 (721)
Q Consensus 612 gs~DgtIrIWDlrs 625 (721)
++.||+|+.||...
T Consensus 220 ~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSK 233 (1081)
T ss_pred cCCCCceeeecccc
Confidence 99999999999764
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=2.3e-07 Score=98.74 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=114.5
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.++..+..+| ++.++|++..+....+++..... ............++..+... ......-.+++...+.+|...
T Consensus 63 ~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccc
Confidence 3455667778 89999999988887777765322 22222221222333333322 122223334555666677666
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
.+. ......|-.-++.|+|+|++..++++..|..||+-.......+..|.-+|...|..++.-++. .|
T Consensus 141 ~~~----------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~L 208 (390)
T KOG3914|consen 141 SGR----------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LL 208 (390)
T ss_pred ccC----------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--ee
Confidence 422 233455667789999999999999999999999998887777888876699999999998764 79
Q ss_pred EEEECCCcEEEEECCCCCce
Q 004969 610 ATSSFDQDVKLWDLRQKPIQ 629 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~ 629 (721)
++||.|+++++||++++++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999998764
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=1e-05 Score=100.43 Aligned_cols=228 Identities=15% Similarity=0.133 Sum_probs=143.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------------CCCCeEEEEEeeCCCCEEEE-EeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG------------AMNSVLGLCWLKKYPSKLIA-GSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~------------H~~~V~sl~fsp~d~~~LaS-gs~DG 521 (721)
.+..+++++.++.++++-+..+.|++||.. |..+..+...+ +-....+|++. ++++.|+. -...+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENH 646 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCc
Confidence 366799998667788888889999999986 55544443211 11235788887 45565544 44567
Q ss_pred eEEEEEcCCCCCcccccccC--cc-------eeEeccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccc
Q 004969 522 SLKLYDIRHMPPSIRGMHYG--AG-------TVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADM 591 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~--~~-------~~~~~~~~~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~ 591 (721)
.|+++|..++.. ..+.+. .. .........-..++++|+++.+ ++.+.++.|++||..++... .+.+.
T Consensus 647 ~Ir~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~ 723 (1057)
T PLN02919 647 ALREIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD 723 (1057)
T ss_pred eEEEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence 899999876432 111110 00 0000001223678999855555 44456789999999876543 22110
Q ss_pred --------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-----------EecC---------C
Q 004969 592 --------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-----------TASS---------S 637 (721)
Q Consensus 592 --------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-----------~~~~---------~ 637 (721)
.-.....|+++|++..++++-+.++.|++||+.++...... .+.. .
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 11245679999998557777788899999999876422111 0000 0
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----------------ccCeEEEEECCCC
Q 004969 638 KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----------------NMSILAAYTRPSS 687 (721)
Q Consensus 638 ~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----------------~~~V~~v~fsP~~ 687 (721)
..+..++++++|..+++-+.++.|++||..+..+..+ -.....++++|++
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 1234789999999888888899999999875433211 0145678888888
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.61 E-value=9e-06 Score=88.07 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=129.4
Q ss_pred EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-eEEEEEcCCCCCcccccc
Q 004969 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-SLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-tVrIWDi~~~~~~~~~~~ 539 (721)
|++.+|++++..|. |...|.+...+-.++. +|.+.|.-..+. .+++-++.|..|| .+-|+|.++++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv----~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~------ 394 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV----GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEV------ 394 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc----CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceE------
Confidence 66668999998874 6788888766655443 677788888876 6777889999999 899999998653
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC---
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--- 616 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--- 616 (721)
...-..-+.|.++..+++|..++++-....+.++|+.+|.....-+. ..+-|+...|||++ +++|-+--+|
T Consensus 395 ----kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~ns-r~iAYafP~gy~t 468 (668)
T COG4946 395 ----KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNS-RWIAYAFPEGYYT 468 (668)
T ss_pred ----EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCc-eeEEEecCcceee
Confidence 11222335689999999999998888888999999999986554443 66789999999999 7888776665
Q ss_pred -cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE
Q 004969 617 -DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653 (721)
Q Consensus 617 -tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La 653 (721)
.|+++|+.+++...+.+-. ....+-+|.|||++|.
T Consensus 469 q~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLY 504 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLY 504 (668)
T ss_pred eeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEE
Confidence 5999999987543332211 1122568888888876
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=101.91 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=150.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCC---CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMN---SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~---~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
+|..++.-|.+..-+.+++.|+.|.-+|+..+.....+... .+.. ....++..|.+...+++|+.|-.+++||.+.
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence 57788888988899999999999999999876654333322 2333 4678888887888999999999999999986
Q ss_pred CCCc-ccccccCcceeEe--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--C----------cEEEE-EccccCC
Q 004969 531 MPPS-IRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--G----------RRLQV-FADMHKE 594 (721)
Q Consensus 531 ~~~~-~~~~~~~~~~~~~--~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~----------~~v~~-l~~~h~~ 594 (721)
-... ......+-..... .....|++++++.++..++++-.|-.|+++.-.. | ..++. ++| |..
T Consensus 314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG-HrN 392 (559)
T KOG1334|consen 314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG-HRN 392 (559)
T ss_pred hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc-ccc
Confidence 3321 0000000000001 2334699999988888898888899999995443 2 22333 555 754
Q ss_pred --CeEEEEE-cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 595 --HINVVKF-SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 595 --~V~sI~f-sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|..+-| .|.. .++++||.-|.|.||+-.+++.... +.+....| |+.-+|--..||+.|-|..|+||.-.
T Consensus 393 ~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~~--MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 393 SRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIRF--MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ccccceeeeccCcc-ceEEecCccceEEEEecchhHHHHH--hhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 4666765 4655 7999999999999999998865433 44444466 89999999999999999999999863
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=1e-05 Score=82.33 Aligned_cols=192 Identities=16% Similarity=0.100 Sum_probs=128.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
...+||.|+..|...+|...+.+....+-. .|...|+-+.=.-.....+..++.|.++++.+++.+.....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-------- 153 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-------- 153 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--------
Confidence 457899999999999999986543322221 33333332110001223466788999999999987544211
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD 622 (721)
+.+.. -.+.++++++++..+++.|....|-.|.+.. ++. +..........-.+..|+... ..+|++..||++.|||
T Consensus 154 ~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 154 VHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYD 231 (344)
T ss_pred eeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEE
Confidence 11111 1268899999999999999999999998874 333 332322245566788999887 7999999999999999
Q ss_pred CCCCCce---eEEEecCCCCeE-EEEEecCC--CEEEEEeCCCcEEEEEcC
Q 004969 623 LRQKPIQ---PCYTASSSKGNV-MVCFSPDD--HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 623 lrs~~~~---~~~~~~~~~~~v-sl~fSpdg--~~Lasgs~Dg~I~VWDl~ 667 (721)
+|..... ...+-+.|.+.+ .+.|++-| ..|+..-.-+.++|-|++
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 9975321 122334577777 78999865 355555557788999987
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=1.7e-05 Score=89.42 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=113.7
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE---EEEEeCCC--eEEEEEcCCCCCcccccccCcceeEecc
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK---LIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDE 549 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~---LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~ 549 (721)
.+.|.+.|...+... .+. .....+..-.|+ ++++. +++...+| .|.+.++.+++... ... .
T Consensus 164 ~~~l~~~d~dG~~~~-~lt--~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------lt~--~ 229 (428)
T PRK01029 164 QGELWSVDYDGQNLR-PLT--QEHSLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------ILA--L 229 (428)
T ss_pred cceEEEEcCCCCCce-Ecc--cCCCCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceE--------eec--C
Confidence 346777777655443 333 233456677898 56653 23444444 57777887754311 111 1
Q ss_pred CCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969 550 FDQLTSVHVNSMDELFLASGY-----SKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW 621 (721)
Q Consensus 550 ~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW 621 (721)
........|+|+|..++..+. +..+..|++..+ +..+...+ +.......+|+|||..++.+...+|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 223356789999999887763 223445777653 33333322 333456789999994344444456765666
Q ss_pred E--CCCCCceeEEEecCCCCe-EEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc---ccCeEEEEECCCCC
Q 004969 622 D--LRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF---NMSILAAYTRPSSK 688 (721)
Q Consensus 622 D--lrs~~~~~~~~~~~~~~~-vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~---~~~V~~v~fsP~~~ 688 (721)
. +...... ...+...... ....|||||++|+..+.+ ..|++||+.+...+.. ...+....|+|+++
T Consensus 309 ~~~~~~~g~~-~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 309 IMQIDPEGQS-PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred EEECcccccc-eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCC
Confidence 4 4321111 1222222223 378999999999876543 3689999985543332 23566789999994
No 266
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=0.00017 Score=74.74 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=139.7
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
-+..|.+.++.++++-...+.|..|+..++.... +.. ....++++..++ ..++.+...+. .++|..+++...
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----~~~~G~~~~~~~-g~l~v~~~~~~-~~~d~~~g~~~~- 74 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----PGPNGMAFDRPD-GRLYVADSGGI-AVVDPDTGKVTV- 74 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----SSEEEEEEECTT-SEEEEEETTCE-EEEETTTTEEEE-
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----CCCceEEEEccC-CEEEEEEcCce-EEEecCCCcEEE-
Confidence 3578998777888887789999999998876543 332 126777776344 55666666544 555888754311
Q ss_pred ccccCcceeEec----cCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 537 GMHYGAGTVTFD----EFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 537 ~~~~~~~~~~~~----~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
..... .....+.+++.++|...++.... |.|..++.. ++...... .-...+.|+|+|+
T Consensus 75 -------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~d 144 (246)
T PF08450_consen 75 -------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPD 144 (246)
T ss_dssp -------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETT
T ss_pred -------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCc
Confidence 11110 12346899999998877766532 557778877 55444443 4556789999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCc-----eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc---
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPI-----QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN--- 675 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~-----~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~--- 675 (721)
+..++++-+..+.|..|++..... .....+....+.. .++++.+|+..++....+.|.+++.+|+.+....
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SS
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCC
Confidence 954556778888999999864322 1122333333333 7999999999998888999999999987654442
Q ss_pred cCeEEEEE-CCCC
Q 004969 676 MSILAAYT-RPSS 687 (721)
Q Consensus 676 ~~V~~v~f-sP~~ 687 (721)
..+.+++| -|+.
T Consensus 225 ~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 225 PRPTNCAFGGPDG 237 (246)
T ss_dssp SSEEEEEEESTTS
T ss_pred CCEEEEEEECCCC
Confidence 36788888 4554
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-06 Score=90.18 Aligned_cols=207 Identities=16% Similarity=0.275 Sum_probs=136.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-E----EEEeecCCC------------CCCeEEEEEeeCCC-CEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-I----VSYIPSFGA------------MNSVLGLCWLKKYP-SKLIA 516 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~----i~~l~~~~H------------~~~V~sl~fsp~d~-~~LaS 516 (721)
.|+++.|.. .|.++++|...|.|.+|.-+... + ...++ +| ...|..+.|..+.+ ..++.
T Consensus 28 ~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 28 KITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred eeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 489999999 89999999999999999865432 1 11222 33 24688899985443 45667
Q ss_pred EeCCCeEEEEEcCCCCCcc--------------------------cccccCccee--------EeccCCCeEEEEEecCC
Q 004969 517 GSDNGSLKLYDIRHMPPSI--------------------------RGMHYGAGTV--------TFDEFDQLTSVHVNSMD 562 (721)
Q Consensus 517 gs~DGtVrIWDi~~~~~~~--------------------------~~~~~~~~~~--------~~~~~~~V~sv~~sp~~ 562 (721)
.+.|.+|++|.+......+ ..+..+...+ .-.|.-.|.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999987542110 0011111111 11244558899998777
Q ss_pred CEEEEEeCCCcEEEEECCCCc---EEEEEcccc-----CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----ee
Q 004969 563 ELFLASGYSKNIALYDINSGR---RLQVFADMH-----KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----QP 630 (721)
Q Consensus 563 ~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h-----~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----~~ 630 (721)
..+++ +.|-.|.+|++.-.. .+..++. | ..-|++..|+|..-+.+.-.+..|.|++-|+|.... ..
T Consensus 185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeee-ccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 66665 457789999987432 2222222 3 346889999998767888888899999999995311 11
Q ss_pred EEE--ecC-----CC---CeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 631 CYT--ASS-----SK---GNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 631 ~~~--~~~-----~~---~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
++. ..+ -. ..+ .+.|+++|+|+++-+ -.++++||++
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn 309 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN 309 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence 111 111 01 122 589999999999765 5689999988
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.43 E-value=4.3e-05 Score=83.76 Aligned_cols=209 Identities=14% Similarity=0.179 Sum_probs=138.8
Q ss_pred CeEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------
Q 004969 455 RPRQFEYHPS-ISCLMVF-----GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS---------- 518 (721)
Q Consensus 455 ~V~~lafsP~-dg~~Las-----Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs---------- 518 (721)
.++.++|+|. ++.-||. +..+++++||.+..+..+.+..... ..=..+.|+ ..+++++.--
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~-~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQ-VLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEe-cCCceEEEEEEEeeecccce
Confidence 3778899994 4444443 4678999999998777665443211 112346776 4555443311
Q ss_pred -CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCC
Q 004969 519 -DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEH 595 (721)
Q Consensus 519 -~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~ 595 (721)
....+.++++..... .+.....++|...+|.|.+..|++.+ .+..+.++|++.. ....+ ....
T Consensus 252 fgesnLyl~~~~e~~i----------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~ 317 (561)
T COG5354 252 FGESNLYLLRITERSI----------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQK 317 (561)
T ss_pred eccceEEEEeeccccc----------ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcc
Confidence 124566777764222 22334467899999999999888776 4788999999965 44443 3445
Q ss_pred eEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe------CCCcEEEEEc
Q 004969 596 INVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG------SGTSMFVQSL 666 (721)
Q Consensus 596 V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs------~Dg~I~VWDl 666 (721)
=+.+.|+|.+ ++++.++.| |.|.+||..... ...-.+.+. +..-+.|+|||+++.+.. .|+.|+|||+
T Consensus 318 rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 318 RNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 5678899999 788887766 679999998753 223233332 222468999999998763 3788999999
Q ss_pred CCCcccccccCeEEEEECCCC
Q 004969 667 RGDPFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 667 ~g~~l~~~~~~V~~v~fsP~~ 687 (721)
.|.++- ....+.|.|.+
T Consensus 395 ~g~~~f----el~~~~W~p~~ 411 (561)
T COG5354 395 YGAKVF----ELTNITWDPSG 411 (561)
T ss_pred cCchhh----hhhhccccCCc
Confidence 987643 45567777765
No 269
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=3.1e-05 Score=79.91 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=113.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----CCCCCeEEEEEeeCC-----CCEEEEEeCCCeEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKY-----PSKLIAGSDNGSLKL 525 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-----~H~~~V~sl~fsp~d-----~~~LaSgs~DGtVrI 525 (721)
=+.++||| |+.+||.+...|+|+++|+.. ..+..++.. .-..+|.++.|.+.. ...|++-..+|.++-
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 35789999 999999999999999999974 444444321 123578888886443 235777788888888
Q ss_pred EEcCCCCCcccccccCcce--eEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGT--VTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~--~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f 601 (721)
|-+..+... +.... ..+. ....|.++.++|..+.+++||.... +.+.. . +....+++-..
T Consensus 124 y~vs~gt~q-----~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~-a~~~GLtaWRi 187 (282)
T PF15492_consen 124 YLVSVGTNQ-----GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----K-ASSCGLTAWRI 187 (282)
T ss_pred EEEEcccCC-----cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----c-ccccCceEEEE
Confidence 887442210 01112 2222 3456999999999999999885322 00000 0 01222332222
Q ss_pred cCCCCcEE-EEEECCCc------EEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 602 SNHSPSIF-ATSSFDQD------VKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 602 sPdg~~lL-aSgs~Dgt------IrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
-.+.|.+. ++...|+. -.+|.+-+. ..+... ....+..+..||||..||+.+.+|.|.+|++.
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 22222222 22222221 123332221 122221 22334489999999999999999999999987
No 270
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=6.8e-06 Score=94.17 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=125.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
++|.+++. .+++-|+-+|.|++.+.+ |.....+ .|... ..+|.+++|||.||+|.|-.+-+.+.
T Consensus 42 is~~av~~---~~~~~GtH~g~v~~~~~~-~~~~~~~---~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~-- 105 (846)
T KOG2066|consen 42 ISCCAVHD---KFFALGTHRGAVYLTTCQ-GNPKTNF---DHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDE-- 105 (846)
T ss_pred HHHHHhhc---ceeeeccccceEEEEecC-Ccccccc---ccccc-------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence 56667765 899999999999999987 3332222 34333 26799999999999999999888654
Q ss_pred cccccCcceeEeccCCCeEEEEEecC-----CCEEEEEeCCCcEEEEECCC---CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSM-----DELFLASGYSKNIALYDINS---GRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~-----~~~lls~g~Dg~IrlWDl~s---~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
...+....++.+++++|+ ...+++||..| +.++.-+- ...+ .+.. ..++|.++.|. | +
T Consensus 106 --------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~-~eG~I~~i~W~--g-~ 171 (846)
T KOG2066|consen 106 --------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE-GEGPIHSIKWR--G-N 171 (846)
T ss_pred --------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec-CccceEEEEec--C-c
Confidence 344556678999999997 46788998888 77776441 1222 3333 67899999996 5 6
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSK-----GNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-----~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
++|-++.+| |+|||+.+++.......+... -+-.+.|.++.+.++ |...+|+|..++
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 899998887 899999887543222222111 111588988776665 334578888877
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=7.9e-07 Score=92.96 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=117.4
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~ 539 (721)
+|+-..-.+-++.+.+-.|-+-|+++|.... + ...+.|.++.|. ..++++..|...|.|...|++.+.. .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f---~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnq-----G 287 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F---QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQ-----G 287 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-c---ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeeccc-----C
Confidence 5554222222455556678899999875432 3 235679999997 6788999999999999999998532 0
Q ss_pred cCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEE--EEEcCCCCcEEEEEE
Q 004969 540 YGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINV--VKFSNHSPSIFATSS 613 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~s--I~fsPdg~~lLaSgs 613 (721)
.......+-|...|+++..-. +++.+++++.+|+|++||++.-++ ++++.| |...-.- +..++.. ..+++++
T Consensus 288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-HvN~~a~l~~~v~~ee-g~I~s~G 365 (425)
T KOG2695|consen 288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-HVNLSAYLPAHVKEEE-GSIFSVG 365 (425)
T ss_pred CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec-cccccccccccccccc-ceEEEcc
Confidence 122345677888899987755 788999999999999999997666 888886 7554333 2344544 5788899
Q ss_pred CCCcEEEEECCCCCceeEEEe
Q 004969 614 FDQDVKLWDLRQKPIQPCYTA 634 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~ 634 (721)
+|...|||.++.+.......+
T Consensus 366 dDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred CeeEEEEEecccCceeeccCC
Confidence 999999999999866444333
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00017 Score=78.55 Aligned_cols=208 Identities=9% Similarity=0.033 Sum_probs=127.7
Q ss_pred CeEEEEEeCCCCCEEEEEEC----------CCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEe-
Q 004969 455 RPRQFEYHPSISCLMVFGTL----------DGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGS- 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~----------DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs- 518 (721)
+++.+ ++| |++.+.++.. +..|.+||..+++.+..+..... ......++++ +++++++...
T Consensus 48 ~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~ 124 (352)
T TIGR02658 48 LPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQF 124 (352)
T ss_pred CCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecC
Confidence 35555 899 7776666554 78999999999999988875211 1223366777 7888888765
Q ss_pred C-CCeEEEEEcCCCCCcccccc--------------------cCcceeEec-------cCCCeEEE---------EEec-
Q 004969 519 D-NGSLKLYDIRHMPPSIRGMH--------------------YGAGTVTFD-------EFDQLTSV---------HVNS- 560 (721)
Q Consensus 519 ~-DGtVrIWDi~~~~~~~~~~~--------------------~~~~~~~~~-------~~~~V~sv---------~~sp- 560 (721)
. +..|.+.|+.+++....... +....+... ...++... .+.+
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 3 78999999998654211000 000000000 00011000 1233
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-----cEEEEEcc------ccCCCeEEEEEcCCCCcEEEEEE---------CCCcEEE
Q 004969 561 MDELFLASGYSKNIALYDINSG-----RRLQVFAD------MHKEHINVVKFSNHSPSIFATSS---------FDQDVKL 620 (721)
Q Consensus 561 ~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~~------~h~~~V~sI~fsPdg~~lLaSgs---------~DgtIrI 620 (721)
++..++++.. |+|.+.|+... +....+.. -..+.+.-++++|++.++++... ..+.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 5555555555 99999996432 33322221 13344556999999955554332 1257999
Q ss_pred EECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG 668 (721)
Q Consensus 621 WDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g 668 (721)
+|..+++. +..+........++++|||+ +|++.. .++.|.+.|...
T Consensus 284 iD~~t~kv--i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 284 VDAKTGKR--LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EECCCCeE--EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99998854 44444445666899999999 887666 578899999873
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.36 E-value=1.2e-05 Score=84.41 Aligned_cols=194 Identities=12% Similarity=0.212 Sum_probs=139.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.++++++++ +...|++|-..|++.-+.+.. ....+.+. .|...|..+-|+ ....++++++.|..+.---.+.
T Consensus 70 ~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~--~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 70 PCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL--AHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhh--hhhcceeeEEec-CCceeEEEeccccceEEEeecc
Confidence 589999999 889999999999999887642 23334443 889999999997 6788999999998776545554
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl--~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
+... +...+... .+++.+.- .+.+.|...|.|.+-.+ ..-.++.++.+ |.+.+.+++|.|.. .+
T Consensus 146 ~~~l--------g~Y~~~~~--~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~-~~ 211 (404)
T KOG1409|consen 146 GNRL--------GGYNFETP--ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQ-RL 211 (404)
T ss_pred CCcc--------cceEeecc--CCCCceee--EEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCC-cE
Confidence 4321 11111111 11111111 13344444555554433 34567788887 99999999999987 79
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+.+|..|..+-+||+-..+. ..+...+|...+ .+.+-+--+.+++.+.||.|-+|+.+
T Consensus 212 LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999986543 356667777777 67777788899999999999999986
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00051 Score=73.01 Aligned_cols=240 Identities=12% Similarity=0.120 Sum_probs=147.4
Q ss_pred CeEEEEEeCCCCCEEEEEEC---CCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTL---DGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~---DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi 528 (721)
.|+=++|+| ++++|.++-. +|.|.-|.+.. |+....-+......+-..++.. .++++++++.. .|.|.++-+
T Consensus 41 nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 41 NPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred CCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEc
Confidence 477899999 8878877755 47787777764 5543221111112333778887 78888888874 589999999
Q ss_pred CCCCCcc---cccccC-cceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEc--cccCCCeEEEEE
Q 004969 529 RHMPPSI---RGMHYG-AGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFA--DMHKEHINVVKF 601 (721)
Q Consensus 529 ~~~~~~~---~~~~~~-~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~f 601 (721)
....... ...... .+...-+....+....+.|+++++++..- --.|.+|++..|+....-. -........|.|
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F 198 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF 198 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence 7632211 111100 00111111122788889999999999873 3569999999776532211 114567789999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCC--CCceeEEE-------ecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcC--CC
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYT-------ASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSLR--GD 669 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~-------~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~--g~ 669 (721)
+|+++...+..--+++|-+|.... ++...+.. +.+..+.-.+..+|||++|+++.. ...|.+|.+. +.
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 999954445566699999999887 33322222 123333337899999999998753 3367777776 22
Q ss_pred cccc------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 670 PFRD------FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 670 ~l~~------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+.- +........++|.+ .+|+.++..
T Consensus 279 ~L~~~~~~~teg~~PR~F~i~~~g-------~~Liaa~q~ 311 (346)
T COG2706 279 KLELVGITPTEGQFPRDFNINPSG-------RFLIAANQK 311 (346)
T ss_pred EEEEEEEeccCCcCCccceeCCCC-------CEEEEEccC
Confidence 2211 12234556777887 555555443
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=8.8e-07 Score=96.78 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=126.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
|++++--. +.+-+++++.|.+|++|.++. |.....+....|+.+|.++.|. .+.++++ +.||.|.+||.-.
T Consensus 738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~--ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIA--SCDGGIHLWDPFI 813 (1034)
T ss_pred hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceee--eccCcceeecccc
Confidence 44444444 667799999999999999863 2222333344999999999997 5555654 5689999999877
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHS 605 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg 605 (721)
+...-+....... ...+.|.++.- -+...++++ +...+|+++|.+.++.+..++- +....+.+++..|.|
T Consensus 814 gr~Laq~~dapk~----~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 814 GRLLAQMEDAPKE----GAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred cchhHhhhcCccc----CCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 6553221111100 00012333321 123344444 3578999999999887665541 244678899999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEE-EE
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFV-QS 665 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~V-WD 665 (721)
++++++-..|.|.+.|.|+++. +..+..-.-.. .+ -.|..+.++....|.++.| |.
T Consensus 889 -N~lAa~LSnGci~~LDaR~G~v--INswrpmecdllql-aapsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 889 -NKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQL-AAPSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred -chhhHHhcCCcEEEEecCCCce--eccCCcccchhhhh-cCchhHHHHhhcccceeEeeeh
Confidence 8999999999999999999854 22222111111 11 1355666776667777777 65
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=2.9e-07 Score=105.18 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=139.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-C-eEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-G-SLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-G-tVrIWDi~~~~ 532 (721)
.-+|++|+. +.++|+.|+..|.|+++++.+|.....+. +|..+|+.+.-+ .++..+++.+.- . -..+|++...-
T Consensus 1103 ~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1103 LFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc--cccccccccccc-CCcceeeeeccccCchHHHhcccccc
Confidence 368999999 88999999999999999999998887776 899999999976 566666555433 2 47789987621
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEEcCCCCcEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~fsPdg~~lL 609 (721)
. ....| ..-.++.|+.....-+.|.......+||+.++.++.++.. +....-++..|+|+. .++
T Consensus 1179 ~---------~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LI 1245 (1516)
T KOG1832|consen 1179 G---------PRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLI 1245 (1516)
T ss_pred C---------ccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceE
Confidence 1 12222 2235666755544555555556789999999988776331 122334778999998 565
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--ccCeEEEEECCCC
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--~~~V~~v~fsP~~ 687 (721)
+ .|| .+||+|... .++.+..-.....-.|+|.|..++..+. |||++.-.+..+ ...-..+.|+..|
T Consensus 1246 l---ndG--vLWDvR~~~--aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPE--AIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred e---eCc--eeeeeccHH--HHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCccccceEEEeccCc
Confidence 4 455 479999863 3444443333335689999999887663 899983211111 2234557777777
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.0001 Score=82.76 Aligned_cols=192 Identities=14% Similarity=-0.008 Sum_probs=117.7
Q ss_pred eEEEEEeCCCCCE-EEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCC--CeEEEEEc
Q 004969 456 PRQFEYHPSISCL-MVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDN--GSLKLYDI 528 (721)
Q Consensus 456 V~~lafsP~dg~~-LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~D--GtVrIWDi 528 (721)
...-.|+| +++. ++..+. +..|.++|+.+|+...... ..+......|+ ++++.++ +.+.+ ..|.++|+
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEEC
Confidence 56789999 7774 554443 3579999998887655443 23456667898 5676554 44444 45777787
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.++.. ..+... ........|+|+|..++..+. .+ .|.++|+.+++..+.... ... ...|+|+|
T Consensus 265 ~~g~~--~~LT~~--------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~~--~~~~SPDG 330 (419)
T PRK04043 265 NTKTL--TQITNY--------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GKN--NSSVSTYK 330 (419)
T ss_pred CCCcE--EEcccC--------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CCc--CceECCCC
Confidence 66542 111111 111234579999998887774 23 688889988776443331 111 24899999
Q ss_pred CcEEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004969 606 PSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~ 669 (721)
..++++.... ..|.+.|+.++....+.. ........|+|||+.++..+.++ .+.+.++.|.
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5444444432 368888988875433322 22222579999999887665433 3566777764
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00023 Score=80.10 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=115.3
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE-EEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~-LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
..|.+-|.. |...+.+.. + +.+..-.|+ ++++. ++..+. +..|.++|+.+++.. .+ ....+
T Consensus 169 ~~l~~~d~d-g~~~~~~~~-~--~~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~l-t~~~g 233 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVK-G--GLNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KI-ASSQG 233 (419)
T ss_pred ceEEEECCC-CCceeEEcc-C--CCeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EE-ecCCC
Confidence 355555554 333333331 2 367789998 56663 554433 356888898876541 11 11223
Q ss_pred CeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCC
Q 004969 552 QLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQK 626 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~ 626 (721)
......|+|++..++.... +..|.++|+.+++..+ +.. +........|+|||..++++....+ .|.++|+.++
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-ccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3456789999988776543 4568888998776443 332 3333345689999955555554444 5777888877
Q ss_pred CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969 627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---------TSMFVQSLRGDPFRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---------g~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~ 688 (721)
....+. ..+.. ...|||||++|+..+.. ..|++.|+.+...+.. ........|+|+++
T Consensus 312 ~~~rlt-~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 312 SVEQVV-FHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred CeEeCc-cCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence 543332 12221 24899999999876543 3678888875543322 12233478999993
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.00023 Score=75.55 Aligned_cols=210 Identities=16% Similarity=0.243 Sum_probs=137.9
Q ss_pred CCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccC
Q 004969 475 DGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF 550 (721)
Q Consensus 475 DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~ 550 (721)
+.-|++|++.+.. .+...+...+.+.++=|+|+ ++.+.|.++.. +|.|.-|.++...-.+..+.. ... ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~----~~~-~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR----QTL-PG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----ccc-CC
Confidence 4569999987322 22222223566788889998 67778888754 478888888753211111110 001 11
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CcE---EEEEccccCCC----------eEEEEEcCCCCcEEEEEEC-
Q 004969 551 DQLTSVHVNSMDELFLASGY-SKNIALYDINS-GRR---LQVFADMHKEH----------INVVKFSNHSPSIFATSSF- 614 (721)
Q Consensus 551 ~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s-~~~---v~~l~~~h~~~----------V~sI~fsPdg~~lLaSgs~- 614 (721)
.+-+.++++++++.++++.. .|.|.++-++. |.. +..+. |.+. +....+.|++ +++++..-
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 22378899999999999885 68999999975 432 33333 5544 8889999999 56666543
Q ss_pred CCcEEEEECCCCCceeEE--EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC--Cccc----------ccc--cC
Q 004969 615 DQDVKLWDLRQKPIQPCY--TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG--DPFR----------DFN--MS 677 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~--~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g--~~l~----------~~~--~~ 677 (721)
--.|.+|++..++..+.. .+....++--+.|+|++++....+ -+++|-+|.... ..+. .|. ..
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 346999999987655432 334555666799999999987765 488999999874 2222 122 35
Q ss_pred eEEEEECCCCCccccc
Q 004969 678 ILAAYTRPSSKSEIVK 693 (721)
Q Consensus 678 V~~v~fsP~~~~~~v~ 693 (721)
...++.+|+|+..++.
T Consensus 246 ~aaIhis~dGrFLYas 261 (346)
T COG2706 246 AAAIHISPDGRFLYAS 261 (346)
T ss_pred eeEEEECCCCCEEEEe
Confidence 6678889999655443
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.28 E-value=4.1e-06 Score=102.28 Aligned_cols=190 Identities=14% Similarity=0.233 Sum_probs=134.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
+.+.....++...-|..+.+..... .+-..|.++.=+ +...+.+||+.||.|++|.-..++..+.. +
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k----~~v~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~--------r 2247 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIK----HPVENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCF--------R 2247 (2439)
T ss_pred ccCCcccCCccccceecccceeEee----cccCceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEe--------e
Confidence 3344444555555565543332221 334567777766 45567889999999999999886653211 1
Q ss_pred eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEEC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS---FDQDVKLWDL 623 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs---~DgtIrIWDl 623 (721)
-.....|+.+.|+.+|+.+.++..||.+.+|.+. .++....+. |....+...|-. ..+++++ .++.+.+||.
T Consensus 2248 t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2248 TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred ccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee---hhhhccccCCCCCcccchhc
Confidence 1223568889999999999999999999999987 666666665 888888888865 3566654 4678999998
Q ss_pred CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc
Q 004969 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF 674 (721)
Q Consensus 624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~ 674 (721)
--..........+..+.+++++-|..+.|++||.+|.|++||++.+.++.+
T Consensus 2323 l~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2323 LLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred ccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 654333333323334555899999999999999999999999996655443
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=2.7e-06 Score=86.09 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=96.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEcCCCCCccccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIRHMPPSIRGM 538 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi~~~~~~~~~~ 538 (721)
.++.+++|..||.+.+.+.+.... ...++. .|.+ -.+.++. ..++.+.+++. -+..+.|+++..+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---- 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPS-IHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTL---- 172 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccc-cccc-cccccee-ecccEEecCCcceEeeccceeeecccccccc----
Confidence 457799999999999999765211 111111 1111 1122222 23344443321 123445555442211
Q ss_pred ccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt 617 (721)
.......+.|.+++-||..+.++.+| .||.+-+||.+.......+..+|+.+++.+.|+|..|..|++++.||.
T Consensus 173 -----~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 173 -----IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred -----cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 11111223488999999887777665 689999999998866555555699999999999999999999999999
Q ss_pred EEEEECCC
Q 004969 618 VKLWDLRQ 625 (721)
Q Consensus 618 IrIWDlrs 625 (721)
+-.||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999875
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.4e-05 Score=85.20 Aligned_cols=224 Identities=11% Similarity=0.165 Sum_probs=144.8
Q ss_pred eEEEEEeCCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEeecCCCCCCeE-EEEEeeCCCCEEEEEeCCCeE
Q 004969 456 PRQFEYHPSISCLMVFGTL-----------DGEIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~-----------DG~I~IWdl~tg~~i~~l~~~~H~~~V~-sl~fsp~d~~~LaSgs~DGtV 523 (721)
|.-+.||| +.++|++-+. ...+.|||+.+|...+.+........++ -+.|+ .++.++|--..+ +|
T Consensus 252 Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 252 VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGN-SI 328 (698)
T ss_pred ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEeccc-eE
Confidence 77899999 9999998763 2578999999999888876532223333 35787 788888776664 77
Q ss_pred EEEEcCCCCC------cc-------------------------------ccc----------------------------
Q 004969 524 KLYDIRHMPP------SI-------------------------------RGM---------------------------- 538 (721)
Q Consensus 524 rIWDi~~~~~------~~-------------------------------~~~---------------------------- 538 (721)
.||+...... .+ ..+
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 7877653100 00 000
Q ss_pred -------c-cC-cc------ee----------EeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCC-C---cEEE
Q 004969 539 -------H-YG-AG------TV----------TFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINS-G---RRLQ 586 (721)
Q Consensus 539 -------~-~~-~~------~~----------~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s-~---~~v~ 586 (721)
. .. .+ +. ...-...|...+|.|.|+.+++-+. ..++.+|-+.+ . +.+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 0 00 00 00 0012345778889999999887664 46799998874 2 2333
Q ss_pred EEccccCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------
Q 004969 587 VFADMHKEHINVVKFSNHSPSIFATS---SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------ 657 (721)
Q Consensus 587 ~l~~~h~~~V~sI~fsPdg~~lLaSg---s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------ 657 (721)
.+. ....+.+.|+|.| .+++.+ |..|.+.++|+....+. ......|.....+.|.|.|+|+++++.
T Consensus 489 ~~d---k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 489 ELD---KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLK-DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhc---ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhh-hccCccccccccceECCCCCEEEEeeehhhhcc
Confidence 333 3567889999999 666654 45788999999853222 222344556667999999999999876
Q ss_pred CCcEEEEEcCCCccccc-ccCeEEEEECCCC
Q 004969 658 GTSMFVQSLRGDPFRDF-NMSILAAYTRPSS 687 (721)
Q Consensus 658 Dg~I~VWDl~g~~l~~~-~~~V~~v~fsP~~ 687 (721)
|..-++|+++|+.++.- -.......|.|.-
T Consensus 564 d~GYri~tfqGrll~~~~i~~f~qF~WRPRP 594 (698)
T KOG2314|consen 564 DNGYRIFTFQGRLLKEDIIDRFKQFLWRPRP 594 (698)
T ss_pred ccceEEEEeecHHHHHHHHHHHHhhccCCCC
Confidence 44567899998765432 1233345677765
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.27 E-value=4e-06 Score=84.86 Aligned_cols=203 Identities=13% Similarity=0.156 Sum_probs=122.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe---------eCCCCEEEEEeCCCeEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---------KKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs---------p~d~~~LaSgs~DGtVrIW 526 (721)
++.+.+.. ...|+++..++.+......++.+....+.....++-.+++.+ ...++.+++++.||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 56666655 355677777777766665544443322211111222222221 1345679999999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f 601 (721)
+.+.-.. +......... .-.+.+....+..+.+++. -+..+.|+++..+....-.. ....|.+++-
T Consensus 117 s~~~~~~----~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLA----LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCS 187 (319)
T ss_pred echHHHh----hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhC
Confidence 9876211 1001111111 0112222233444444432 24456666664332221111 2345999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~ 670 (721)
+|...+++++|+.||.+-+||.|+.. .++..+..|...+ -+-|+| ++..|++++.||.+.-||-.+.+
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred CcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 99887899999999999999999873 4455566777777 799999 77899999999999999987543
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=4.1e-06 Score=87.73 Aligned_cols=146 Identities=13% Similarity=0.167 Sum_probs=112.4
Q ss_pred EEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----cEEEEEc
Q 004969 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-----RRLQVFA 589 (721)
Q Consensus 515 aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~ 589 (721)
++.|.+-.|-+-|++++-. ..|...+.|.++.|+..++.++.|...|.|..+|++.+ .+.+.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~-----------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-----------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred ecccccceeEEEEeecccc-----------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 5667777888889988532 24455667888999888999999999999999999964 5666776
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeE---EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV---MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~v---sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
|.+.|+++.........+++.+.+|+|++||+|.-++ ..+.+..+|.... -+-..+....+++++.|...+||.
T Consensus 297 --h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 --HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred --cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 9999999988773336888889999999999997654 2244555665433 355677788899999999999999
Q ss_pred cC-CCcccc
Q 004969 666 LR-GDPFRD 673 (721)
Q Consensus 666 l~-g~~l~~ 673 (721)
++ |+.+..
T Consensus 375 l~~ghLl~t 383 (425)
T KOG2695|consen 375 LDSGHLLCT 383 (425)
T ss_pred cccCceeec
Confidence 98 555443
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.00018 Score=79.88 Aligned_cols=223 Identities=12% Similarity=0.151 Sum_probs=136.3
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEE-----EeCCCeEEEEEcCC
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIA-----GSDNGSLKLYDIRH 530 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaS-----gs~DGtVrIWDi~~ 530 (721)
++..|++ |.. +++--..+.+++|+..+-+.+. ..-|...|+.+.++|. ....+++ .|.-+.|+||....
T Consensus 129 W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~---~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ---HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred ccccccc-chh-hhhhhhcceEEEEecCCcccee---eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 4567777 544 3333446789999987633221 1234677999999864 3445544 45667899999873
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE-Ee-C-C---------CcEEEEECCCCcEEEEEccccCCCeEE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SG-Y-S---------KNIALYDINSGRRLQVFADMHKEHINV 598 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g-~-D---------g~IrlWDl~s~~~v~~l~~~h~~~V~s 598 (721)
... .. ......|-..+. ..+.|++.+.-+++ ++ + | .++++.++........+. ..++|.+
T Consensus 204 ~~~--~~---~~a~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhd 275 (566)
T KOG2315|consen 204 EGQ--HQ---PVANKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHD 275 (566)
T ss_pred ccc--cc---hhhhccccccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceE
Confidence 222 00 001111211122 34567766654332 22 1 3 368888888445555554 6889999
Q ss_pred EEEcCCCCcEEEE-EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCc-ccc
Q 004969 599 VKFSNHSPSIFAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDP-FRD 673 (721)
Q Consensus 599 I~fsPdg~~lLaS-gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~-l~~ 673 (721)
+.|+|.+..+.++ |-.-..+-|||++.. +++.+. ......+-|+|.|++++.+|-+ |.+-|||+.... +..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999999433333 344677999999863 455543 2333479999999999987764 689999998432 322
Q ss_pred cc-cCeEEEEECCCCCcccccccEEEEecCC
Q 004969 674 FN-MSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 674 ~~-~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+. ....-..|+|+| ..+.|+...
T Consensus 352 ~~a~~tt~~eW~PdG-------e~flTATTa 375 (566)
T KOG2315|consen 352 FKAANTTVFEWSPDG-------EYFLTATTA 375 (566)
T ss_pred cccCCceEEEEcCCC-------cEEEEEecc
Confidence 32 234557999999 555555443
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.20 E-value=0.0002 Score=87.71 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=141.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEE----ECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVV----NHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IW----dl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.|.++.|-+ +..-++.+..+|.|.+. +..+.. ++..+ ...|.+++|+ ||...|+.++.+|++.+.+-
T Consensus 77 ~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----d~GI~a~~WS-PD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 77 KIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----DSGILAASWS-PDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred cEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----cCcEEEEEEC-CCcCEEEEEeCCCEEEEEec
Confidence 589999999 88889999999999999 554433 33333 3689999999 78899999998999888653
Q ss_pred CC-------------C----------CC--cccccccCc-------ce------eEeccCCCeEEEEEecCCCEEEEEeC
Q 004969 529 RH-------------M----------PP--SIRGMHYGA-------GT------VTFDEFDQLTSVHVNSMDELFLASGY 570 (721)
Q Consensus 529 ~~-------------~----------~~--~~~~~~~~~-------~~------~~~~~~~~V~sv~~sp~~~~lls~g~ 570 (721)
.- + +. ..++..+.. .. ......+.-..++|-.+|.+|++.+-
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 31 0 00 000000110 00 00112234578899888999988873
Q ss_pred ---C---CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCCCCceeEEEec--CCCC
Q 004969 571 ---S---KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQPCYTAS--SSKG 639 (721)
Q Consensus 571 ---D---g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~---DgtIrIWDlrs~~~~~~~~~~--~~~~ 639 (721)
. ..+|+|+-. |....+-.. -.+--.+++|.|.| +++|+.-. ...|.+|.- +|.....+.++ ....
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCc
Confidence 2 469999966 665444432 34444578999999 78887754 345666664 34333344444 2333
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEEcCC------Ccccc-cccCeEEEEECCCC
Q 004969 640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLRG------DPFRD-FNMSILAAYTRPSS 687 (721)
Q Consensus 640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g------~~l~~-~~~~V~~v~fsP~~ 687 (721)
.+ .+.|++|+..|+..-.|. |.+|-... +.+.- -...+..+.|||..
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 34 899999999999977544 99998651 11111 02234558999975
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.19 E-value=0.00027 Score=76.97 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=137.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEe---ecC-CCC-----CCeEEEE-EeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYI---PSF-GAM-----NSVLGLC-WLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l---~~~-~H~-----~~V~sl~-fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
||+.++. +..|.|.+||.++....+.- +.. ... .+..-+. |++.++++++..|. |...|.+...+.
T Consensus 277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~-- 352 (668)
T COG4946 277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY-- 352 (668)
T ss_pred CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe--
Confidence 7777766 45788999999876543211 110 000 1111112 44567888888876 466666665532
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.+...+...|.-..+..+...++.|..|| .+-++|.++++..+... .-+.|.++..+|+| ..++++.
T Consensus 353 ---------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dG-K~~vvaN 420 (668)
T COG4946 353 ---------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDG-KKVVVAN 420 (668)
T ss_pred ---------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCC-cEEEEEc
Confidence 33444555566677767777888888888 89999999887554443 66789999999999 7888888
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC----cEEEEEcCCCccccc---ccCeEEEEECC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT----SMFVQSLRGDPFRDF---NMSILAAYTRP 685 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----~I~VWDl~g~~l~~~---~~~V~~v~fsP 685 (721)
....+-+.|+.++..+.+ -....+.+ .+.|||+++++|-+-.+| .|+++|+.+..+-.. ...-.+=+|.|
T Consensus 421 dr~el~vididngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 421 DRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred CceEEEEEEecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 888999999999864322 22333444 899999999999776655 789999987543221 11222335666
Q ss_pred CCC
Q 004969 686 SSK 688 (721)
Q Consensus 686 ~~~ 688 (721)
+++
T Consensus 499 d~r 501 (668)
T COG4946 499 DGR 501 (668)
T ss_pred CCc
Confidence 664
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=5.5e-06 Score=90.73 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=115.7
Q ss_pred CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCc
Q 004969 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKN 573 (721)
Q Consensus 495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~ 573 (721)
.||+..|..++-. .+.+.+++++.|++|++|.++...-. ........++ .|+.+|.++.|-.+...++ +.||.
T Consensus 732 ~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG 805 (1034)
T ss_pred cCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence 4899888888765 56788999999999999999763221 1111122233 3667899998866555554 45789
Q ss_pred EEEEECCCCcEEEEEccc-cCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCCCCceeEEEec---CCCCeE-EEEEe
Q 004969 574 IALYDINSGRRLQVFADM-HKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTAS---SSKGNV-MVCFS 646 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~-h~~~V~sI~fsPd--g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~---~~~~~v-sl~fS 646 (721)
|++||.--|+++..+... ..+.+..+..-|. .+-+++.++...+|+++|.|........... +..+.+ +++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999999888877644421 2233333443333 3234444578999999999998765554443 233334 79999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+.|++++++-.+|.|.+.|.+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecC
Confidence 999999999999999999988
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=5e-05 Score=88.11 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=133.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
++..++.|+....+..+|+.+++..+..... .+.|+-+. .+++.+.+|...|+|.+-|.++.+. .
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~----------i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFET----------I 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEE---ecCcEEEeecccceEEeecCCcCce----------e
Confidence 4466788888888999999988877666532 23366666 4578999999999999999988543 2
Q ss_pred eEec-cCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 545 VTFD-EFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 545 ~~~~-~~~~V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
..+. |.+.|.+++. .|+.++++|. |.-|++||+|+.+.+.-+.- +.+ ..-+.|+|.-...+++++.
T Consensus 211 ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-~~~-P~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-PYG-PQFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-ccC-chhhhhcccccceEEEEec
Confidence 2332 4455676666 8999999984 56789999998776655542 333 3557899987788999999
Q ss_pred CCcEEEEECCCC--CceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 615 DQDVKLWDLRQK--PIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~--~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|...+-|..+- ....++.+.. ..+...+.+|++|+.++.|..+|.|.+|.-+
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 999999994331 1122333333 3334489999999999999999999999843
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.11 E-value=8.1e-06 Score=59.22 Aligned_cols=39 Identities=28% Similarity=0.650 Sum_probs=36.0
Q ss_pred CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (721)
Q Consensus 582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD 622 (721)
++++.++.+ |.+.|++++|+|++ ..+++|+.|++|++||
T Consensus 1 g~~~~~~~~-h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 467888987 99999999999998 8999999999999998
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.10 E-value=4.4e-05 Score=81.70 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCcEE
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSGRRL 585 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~Dg~IrlWDl~s~~~v 585 (721)
+.+.+++.+..+....++++......... ...+.....-+++.+........++. +...+.+|....+...
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl------~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKL------LDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCccee------eeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 66777777777777777777664431110 11111112223444444455555444 3455666665555544
Q ss_pred EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
..+ | |-+-++.|+|+||+ .+++++..|..||+=....--....+ .-||...| .++.- +++.|++||.|+++++|
T Consensus 146 ~~l-G-hvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 146 PIL-G-HVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred hhh-h-hhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 444 3 99999999999999 89999999999999766543221112 23677777 56665 45668999999999999
Q ss_pred EcC-CCccccc
Q 004969 665 SLR-GDPFRDF 674 (721)
Q Consensus 665 Dl~-g~~l~~~ 674 (721)
|++ |+.+..+
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 998 5554433
No 292
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.09 E-value=9.1e-05 Score=77.86 Aligned_cols=203 Identities=15% Similarity=0.165 Sum_probs=134.6
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEE-CCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVN-HENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWd-l~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
|+....-| ...-+++.+.|.+++||- .+.|+.-..+.. ....+++++.+. .+...|+.|-..|++.-+.+...-..
T Consensus 27 vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~-~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 27 VNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYV-SESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeee-ccceEEEEEEecceEEEEEhhhhhhh
Confidence 33333445 445588999999999995 334443333321 235788999987 67788999999999999877653221
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.... .....|...+..+-|+-....+++.|.|+.+.---.+.+..+-.+. .....++..+.- .....|..
T Consensus 104 m~~~-----r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~---~~~fvGd~ 173 (404)
T KOG1409|consen 104 MTFL-----KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA---LYAFVGDH 173 (404)
T ss_pred cchh-----hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee---EEEEeccc
Confidence 1111 1122355678888888888899999998877655555555433222 111111222211 13444555
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF 671 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l 671 (721)
.|.|.+-.+....+.++.++.+|.+.+ +++|.|..+.|++|..|..+.+||+-|.+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence 666666666555567788888898888 999999999999999999999999987653
No 293
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0016 Score=67.90 Aligned_cols=202 Identities=14% Similarity=0.239 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+..|+|+|+++.++++....+.|..++.+ |+.++.++..+ .+-.-+|++. .++.++++.-.++.+.++++.......
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 88999999667788888888999999974 88888888755 3567788886 555555555568999999995533321
Q ss_pred cccccCcceeE--e--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEE--Ec-----cccCCCeEEEEE
Q 004969 536 RGMHYGAGTVT--F--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS---GRRLQV--FA-----DMHKEHINVVKF 601 (721)
Q Consensus 536 ~~~~~~~~~~~--~--~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---~~~v~~--l~-----~~h~~~V~sI~f 601 (721)
.... ..... + .+...+-.++|++.++.++++-...-..+|.+.. ...+.. .. ......+.++++
T Consensus 101 ~~~~--~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 101 DRAD--VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp -EEE--EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred chhh--ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1111 00111 1 1334589999999999888887666566666653 222211 11 113456889999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--------CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
+|..+++++.+.....|..+| .+++......+... ..+-.++|.++|...++ +.-+..+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 999878888888899999999 55655555665542 12337999999976664 455666655
No 294
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=1.5e-06 Score=97.04 Aligned_cols=201 Identities=17% Similarity=0.304 Sum_probs=130.3
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEe----CCCeEEEEEc
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGS----DNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----~DGtVrIWDi 528 (721)
.+.|+++.-. +..++++|..+|.|-+-......-. +.+. .+|....++++|++.+.+.||+|- .|..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-ccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4778887763 3368999999999999887644332 2222 378889999999988888888874 3678999999
Q ss_pred CCCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.+.-.. ......|. ......+++|-.+...+++|.....++++|++... ....+ .+..+..+...|-.
T Consensus 137 ~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 137 NSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFS 207 (783)
T ss_pred ccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCC
Confidence 885220 11111111 22345688898677777777778899999999432 22222 33456677888855
Q ss_pred CcEEEEEECCCcEEEEE-CCCCCceeEEEecCCCC-----eEEEEEecCC--CEEEEEeCCCcEEEEEcC
Q 004969 606 PSIFATSSFDQDVKLWD-LRQKPIQPCYTASSSKG-----NVMVCFSPDD--HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWD-lrs~~~~~~~~~~~~~~-----~vsl~fSpdg--~~Lasgs~Dg~I~VWDl~ 667 (721)
+.++++-. ||.|-+|| .++-+ .++........ ...++|.|.. ...+..-..++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 56777665 99999999 44321 11222211222 3379999944 333334456688999986
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.0023 Score=65.38 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=118.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+++.+++++.++.+..||..+|+.+......+...... . ..+..++.++.++.+..+|..+++............
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--V---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--E---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--e---ecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 45778888999999999999999988877532212221 1 245677777788999999999987644311111000
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC----------eEEEEEcCCCCcEEEEEEC
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH----------INVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~----------V~sI~fsPdg~~lLaSgs~ 614 (721)
.. ........+ .++.++++..++.|..+|+++|+.+..... .... +..-....++ .+..++.
T Consensus 110 ~~---~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 181 (238)
T PF13360_consen 110 AG---VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG--RVYVSSG 181 (238)
T ss_dssp CS---TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT--EEEEECC
T ss_pred cc---cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC--EEEEEcC
Confidence 00 001122222 478888888899999999999999988874 3311 1222222234 5555666
Q ss_pred CCc-EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 615 DQD-VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 615 Dgt-IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++. +.+ |+.+++. ..... ... .......++..++.++.++.+..||++.
T Consensus 182 ~g~~~~~-d~~tg~~--~w~~~-~~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 182 DGRVVAV-DLATGEK--LWSKP-ISG-IYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp TSSEEEE-ETTTTEE--EEEEC-SS--ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCeEEEE-ECCCCCE--EEEec-CCC-ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 664 566 9999853 23333 122 2222567888888888999999999983
No 296
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.06 E-value=0.00023 Score=78.23 Aligned_cols=219 Identities=10% Similarity=0.024 Sum_probs=141.7
Q ss_pred ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe----------
Q 004969 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS---------- 522 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt---------- 522 (721)
...+..+.||| .|.++++....| |.+|.-..+..+..+. | ..|..+.|+ +.+.+|.+-+..+.
T Consensus 32 ~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---~-~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 32 NWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR---H-PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred CcchhheeecC-cchheehhhccc-eEEccccchhheeeee---c-CCceecccC-cccceeeeeccCCccChhhccCCc
Confidence 34688899999 999999988776 9999988776555554 2 468899998 78899998766544
Q ss_pred -----EEEEEcCCCCCcccccccCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe
Q 004969 523 -----LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI 596 (721)
Q Consensus 523 -----VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V 596 (721)
+.+||+.++.... ...+.... .-.+ -+.|+-++.+.+-. ....++++++...-....+.......|
T Consensus 105 ~~~n~~~vwd~~sg~iv~-sf~~~~q~------~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 105 TSKNNVFVWDIASGMIVF-SFNGISQP------YLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred cccCceeEEeccCceeEe-eccccCCc------ccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 8999999876421 11111000 0012 45665566554433 345699999732211112221123567
Q ss_pred EEEEEcCCCC-cEEEE-----EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-----------CCC
Q 004969 597 NVVKFSNHSP-SIFAT-----SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-----------SGT 659 (721)
Q Consensus 597 ~sI~fsPdg~-~lLaS-----gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-----------~Dg 659 (721)
....|+|.+. ..|+. ++.++++++|.+..+.......+. ....+.+.|.+.|.+|+.-- ...
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 7888888742 22332 567889999999866544333332 22334799999999887421 124
Q ss_pred cEEEEEcCCCccccc---ccCeEEEEECCCC
Q 004969 660 SMFVQSLRGDPFRDF---NMSILAAYTRPSS 687 (721)
Q Consensus 660 ~I~VWDl~g~~l~~~---~~~V~~v~fsP~~ 687 (721)
.+++++++++.++.. .++|....|.|.+
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccC
Confidence 678999886655443 6799999999998
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00022 Score=72.86 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=111.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969 511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD 590 (721)
Q Consensus 511 ~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~ 590 (721)
-.+|+.||..|...+|...+.+........+..-+.+ +...+- ..-.+..++.|.++++.++.-+..-.....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~r~cd--~~~~~~i~sndht~k~~~~~~~s~~~~~h~ 156 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL-----VKRYCD--LKFPLNIASNDHTGKTMVVSGDSNKFAVHN 156 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhh-----hhhhcc--cccceeeccCCcceeEEEEecCcccceeec
Confidence 4689999999999999998755422211111110000 011111 123466677888888888774433222211
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-
Q 004969 591 MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR- 667 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~- 667 (721)
..-.+++++++|++ .++++.+....|-.|.+..... ..++..+...+..+.+|+.....+|++..||.+.|||++
T Consensus 157 -~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 157 -QNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred -cccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 11338899999998 8999999999999998876422 222333444455578999999999999999999999998
Q ss_pred -CCcc------c-ccccCeEEEEECCCCC
Q 004969 668 -GDPF------R-DFNMSILAAYTRPSSK 688 (721)
Q Consensus 668 -g~~l------~-~~~~~V~~v~fsP~~~ 688 (721)
+.+. + .|.+.+..+.|+|.+.
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCc
Confidence 2221 2 3577899999998764
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.02 E-value=0.0048 Score=67.42 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=122.7
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcCCCCCcccccccCccee
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
|+|.+.|..+++.+.++.. |.... .+ ++ ++++.++.+. .+..|.+||..+.+..-....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~~P~--~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-- 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GFLPN--PV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-- 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cCCCc--ee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc--
Confidence 8999999999999988874 32222 23 66 6676665554 4789999999997652111111000
Q ss_pred EeccCCCeEEEEEecCCCEEEEEe-C-CCcEEEEECCCCcEEEEEcccc------------------------------C
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASG-Y-SKNIALYDINSGRRLQVFADMH------------------------------K 593 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g-~-Dg~IrlWDl~s~~~v~~l~~~h------------------------------~ 593 (721)
.+.....-..++++|+|..+++.. . +..|.++|+.+++.+.++.-+- .
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 011111234678889999988776 3 7889999999887766443100 0
Q ss_pred CCeEEEE--------------EcC-CCCcEEEEEECCCcEEEEECCCCCcee-----EEEecC------CCCeEEEEEec
Q 004969 594 EHINVVK--------------FSN-HSPSIFATSSFDQDVKLWDLRQKPIQP-----CYTASS------SKGNVMVCFSP 647 (721)
Q Consensus 594 ~~V~sI~--------------fsP-dg~~lLaSgs~DgtIrIWDlrs~~~~~-----~~~~~~------~~~~vsl~fSp 647 (721)
..+.... |.+ +| .++.+... |+|.+.|+....... ...... ..++--++++|
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 0011111 123 55 45544444 999999965432211 111110 11111389999
Q ss_pred CCCEEEEEe----------CCCcEEEEEcCCCc-ccc--cccCeEEEEECCCCC
Q 004969 648 DDHYLLGKG----------SGTSMFVQSLRGDP-FRD--FNMSILAAYTRPSSK 688 (721)
Q Consensus 648 dg~~Lasgs----------~Dg~I~VWDl~g~~-l~~--~~~~V~~v~fsP~~~ 688 (721)
+|+.+++.. ..+.|.++|..... +.. ....+..++++|+++
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCC
Confidence 999888743 12478899987433 332 255889999999995
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=2.5e-05 Score=56.59 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=34.8
Q ss_pred CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 486 ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 486 g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
|+++.++. +|.+.|++|+|+ +++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~--~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR--GHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE--SSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc--CCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 35667777 899999999998 6799999999999999997
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.97 E-value=3e-05 Score=87.91 Aligned_cols=220 Identities=15% Similarity=0.243 Sum_probs=144.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
+.++..+| .|.-+|.++.-| +.+.|+... .....+.. -..-.|-.+.|+|.. ...+++.+...+ .+|++....
T Consensus 27 ~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss 102 (1081)
T KOG0309|consen 27 FNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSS 102 (1081)
T ss_pred ccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCcchh-hhhhhhcCC
Confidence 45677889 788888888887 666676542 33232321 223457778887532 335666655544 489887633
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.. ....+...|...|+.+-|+++.+.+++ ++-|..+..||+++. .++..+.. -......|+|+...++.+|
T Consensus 103 ~~------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 103 SN------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred cc------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhh
Confidence 21 122344456678999999998866555 556999999999985 45666554 4456778999988865555
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEE
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYT 683 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~f 683 (721)
.+..+.|++||++.+. .+...+.+|...+ ++.|.. --..+.+.+.|++++.||..... ..+...++....+
T Consensus 176 -sshg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 176 -SSHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred -hccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 4556779999999874 5677777776666 677765 23456678889999999987322 1122446666666
Q ss_pred CCCCC
Q 004969 684 RPSSK 688 (721)
Q Consensus 684 sP~~~ 688 (721)
-|-+.
T Consensus 254 ~Pfg~ 258 (1081)
T KOG0309|consen 254 LPFGE 258 (1081)
T ss_pred cccCc
Confidence 66653
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.4e-05 Score=83.36 Aligned_cols=211 Identities=14% Similarity=0.131 Sum_probs=137.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCc-ccccccC
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPS-IRGMHYG 541 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~-~~~~~~~ 541 (721)
-.+++.+++.||.++.|--..-..+..+ ....|...|.+++-+ .++-++.|++. |..++++|++.-... ...+...
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 4589999999999999986531211111 123778888888876 78888999787 999999999874431 1111111
Q ss_pred cceeEeccCCCeEEEEEecCCC---EEEEEe-CCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 542 AGTVTFDEFDQLTSVHVNSMDE---LFLASG-YSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 542 ~~~~~~~~~~~V~sv~~sp~~~---~lls~g-~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
.+. +. .++..|+ .++++. .++.+.++|-.... ....+.+.|..+|..+.++|.+ ..+++....|
T Consensus 98 Pg~--------a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~g 166 (558)
T KOG0882|consen 98 PGF--------AE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISG 166 (558)
T ss_pred CCc--------eE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceeeccccc
Confidence 111 11 1112231 333333 47999999988644 5556666799999999999998 7888888889
Q ss_pred cEEEEECCCCCce----eE---------EEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-CcccccccCeEEE
Q 004969 617 DVKLWDLRQKPIQ----PC---------YTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DPFRDFNMSILAA 681 (721)
Q Consensus 617 tIrIWDlrs~~~~----~~---------~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l~~~~~~V~~v 681 (721)
.|.-|.....-.. .. +.+. ....+.++.|+|+|..+.+-+.|..|+++.+++ +..+.+.......
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 9999988731000 01 1111 122334899999999999999999999999884 3333333333333
Q ss_pred EECCCC
Q 004969 682 YTRPSS 687 (721)
Q Consensus 682 ~fsP~~ 687 (721)
++-|..
T Consensus 247 ~~q~ks 252 (558)
T KOG0882|consen 247 QYQPKS 252 (558)
T ss_pred hhcccc
Confidence 333433
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.94 E-value=0.00088 Score=74.00 Aligned_cols=180 Identities=9% Similarity=0.022 Sum_probs=110.9
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCC--CC---eEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--NS---VLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~--~~---V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~ 540 (721)
..++.+..+|.+..+|..+|+.+.......-. .. ...+.-+| ..+..++.++.+|.+..||..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-- 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-- 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--
Confidence 46788888999999999999876554321000 00 00000000 134678888899999999998876432111
Q ss_pred CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI 620 (721)
.. ...... ..++.+++++.+|.+..+|..+|+.+............+... .+ ..+++++.+|.+++
T Consensus 269 --------~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 269 --------AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHW 334 (377)
T ss_pred --------cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEE
Confidence 00 111122 257788888899999999999999887764211222222222 24 47888999999999
Q ss_pred EECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 621 WDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
||..+++..............+..+. +..|+.++.||.|+.|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence 99999866443333221111133333 3457788889998765
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.0004 Score=78.12 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=85.1
Q ss_pred CeEEEEEeeCCCCEEEEE----eCCCeE----EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC
Q 004969 500 SVLGLCWLKKYPSKLIAG----SDNGSL----KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS 571 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSg----s~DGtV----rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D 571 (721)
...++.|+...+..+.|. +.+|.+ .+|++..++. + .....++.....|.+.+++|+...++.|+.|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl--q----rvsvtsipL~s~v~~ca~sp~E~kLvlGC~D 280 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL--Q----RVSVTSIPLPSQVICCARSPSEDKLVLGCED 280 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce--e----EEEEEEEecCCcceEEecCcccceEEEEecC
Confidence 346677774455555553 233432 3455554322 1 1234566677889999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 572 g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~ 626 (721)
|+|.+||...+..... + ..-.++.++|+|+| .++++|+.-|.+.+||+.-.
T Consensus 281 gSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 281 GSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CeEEEEEcCCCeeeee-e--ecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 9999999987754433 2 45668899999999 79999999999999998764
No 304
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.91 E-value=5.9e-06 Score=66.64 Aligned_cols=56 Identities=29% Similarity=0.541 Sum_probs=42.0
Q ss_pred eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV 184 (721)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (721)
+.|+|++|+|+.+. .+..+++|++|+|. +|.|+.++.+.|..||+|+.|.|.+|++
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45777777777776 55677777777777 7777777777777777777777777764
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00018 Score=77.07 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=99.5
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
..|+.++|+|.+..++..++.+..|+|.|+++...+..+. .| ..+++.+|.-.+.+++++|-..|.|.|||++....
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeehee--cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 3589999999777799999999999999999988888776 44 78999999867778999999999999999998765
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.+..+.+........+-.++..-...+.++.++.+..+ ...|.+.. +.....+.-...+...++++.+-...+++|
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 44433321111111000111111222445555544433 44565542 233333332245566667776655455665
Q ss_pred EEC
Q 004969 612 SSF 614 (721)
Q Consensus 612 gs~ 614 (721)
.-.
T Consensus 349 yRs 351 (463)
T KOG1645|consen 349 YRS 351 (463)
T ss_pred ecC
Confidence 544
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.89 E-value=0.0068 Score=64.41 Aligned_cols=221 Identities=12% Similarity=0.116 Sum_probs=133.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCe-EEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGE-IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~-I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi 528 (721)
+...++.+|..+..++.+-.-|+ ..+||..+|+....+.......---.-.|+ +++++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEEC
Confidence 35567889978888888888875 478999999988777642111111134677 78999988644 489999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe------------------CCCcEEEEECCCCcEEEEEc-
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG------------------YSKNIALYDINSGRRLQVFA- 589 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g------------------~Dg~IrlWDl~s~~~v~~l~- 589 (721)
..+-..+..+..+. -.-..+.+.|++..++++- .+.++.+.|..+|+.+....
T Consensus 85 ~~~~~ri~E~~s~G--------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 85 ARGYRRIGEFPSHG--------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred cCCcEEEeEecCCC--------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 94322211111100 0123455667776666551 13456677888888776633
Q ss_pred --cccCCCeEEEEEcCCCCcEEEEEECCC-------cEEEEECCCCCceeEEEec-----CCCCeE-EEEEecCCCEEEE
Q 004969 590 --DMHKEHINVVKFSNHSPSIFATSSFDQ-------DVKLWDLRQKPIQPCYTAS-----SSKGNV-MVCFSPDDHYLLG 654 (721)
Q Consensus 590 --~~h~~~V~sI~fsPdg~~lLaSgs~Dg-------tIrIWDlrs~~~~~~~~~~-----~~~~~v-sl~fSpdg~~Las 654 (721)
..|...|..+++.++| ..++..-..| -+-+++.... ...+..+ .-.+.+ +++++++|.++++
T Consensus 157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 2377789999999998 4443333222 1333433321 1111111 122445 8999999998877
Q ss_pred EeC-CCcEEEEEcC-CCccccccc-CeEEEEECCCC
Q 004969 655 KGS-GTSMFVQSLR-GDPFRDFNM-SILAAYTRPSS 687 (721)
Q Consensus 655 gs~-Dg~I~VWDl~-g~~l~~~~~-~V~~v~fsP~~ 687 (721)
++- .|.+.+||.. |..+..+.. .+..++-.+++
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG 269 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc
Confidence 765 5578999987 433333322 45556666665
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.84 E-value=0.014 Score=60.34 Aligned_cols=184 Identities=13% Similarity=0.143 Sum_probs=116.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CC-CCCCeEEEEEeeCCCCEEEEEeCC--------CeEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FG-AMNSVLGLCWLKKYPSKLIAGSDN--------GSLK 524 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~--~~-H~~~V~sl~fsp~d~~~LaSgs~D--------GtVr 524 (721)
+..+.+...+ ..++.+...+ +.++|..+++....... .. .....+.+++. +++++.++.... |.|.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceE
Confidence 6678888425 4455555555 56669998876554443 12 34668899997 678877776544 4566
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE----EEEEccc--cCCCeE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR----LQVFADM--HKEHIN 597 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~----v~~l~~~--h~~~V~ 597 (721)
.++.. ++. ..........+.++|+|++..++++. ..+.|..+|+..... ...+... ..+...
T Consensus 119 ~~~~~-~~~----------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 119 RIDPD-GKV----------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEETT-SEE----------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred EECCC-CeE----------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 66665 221 11122223468999999999887655 578899999863221 1222211 223478
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEe
Q 004969 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKG 656 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs 656 (721)
.+++..+| ++.++....+.|.++|.. ++......++. ..+++++|. ++.+.|+..+
T Consensus 188 G~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 188 GLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLREIELPV-PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SS-SSEEEEEEESTTSSEEEEEE
T ss_pred cceEcCCC-CEEEEEcCCCEEEEECCC-ccEEEEEcCCC-CCEEEEEEECCCCCEEEEEe
Confidence 89999999 788888889999999988 66555556653 466789994 6767666544
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00037 Score=79.00 Aligned_cols=218 Identities=11% Similarity=0.053 Sum_probs=149.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.-+.|+. ..+.+-+...+|.|.||-+..|.....+......+-|.+++|+ .+|..+...-.||.|.+=.+++.+.-
T Consensus 73 sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIw 150 (1189)
T KOG2041|consen 73 SVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIW 150 (1189)
T ss_pred eEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceec
Confidence 588899999 7788899999999999999888765444433456778999998 89999999999999988777764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-------cEEEEEccc---cCCCeEEEEEc--
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-------RRLQVFADM---HKEHINVVKFS-- 602 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-------~~v~~l~~~---h~~~V~sI~fs-- 602 (721)
-+.+.+ .....+.|+++...++.+-..|.+++||.... .+.....++ ....|..+.|.
T Consensus 151 gKeLkg----------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 151 GKELKG----------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred chhcch----------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 111111 12457889998888888888899999997642 111111111 22345666664
Q ss_pred ------CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEEcC
Q 004969 603 ------NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---------TSMFVQSLR 667 (721)
Q Consensus 603 ------Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---------g~I~VWDl~ 667 (721)
|+. -.++.+-..|.+.|..-.+.. .|+.. ......+...|+++|.+|+++|.+ +.|.+|.--
T Consensus 221 ~~~~v~pdr-P~lavcy~nGr~QiMR~eND~-~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 221 PYQPVPPDR-PRLAVCYANGRMQIMRSENDP-EPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred ccccCCCCC-CEEEEEEcCceehhhhhcCCC-CCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 455 478899999999887665543 33332 223556689999999999988764 256777665
Q ss_pred CCccccc---ccCeEEEEECCCC
Q 004969 668 GDPFRDF---NMSILAAYTRPSS 687 (721)
Q Consensus 668 g~~l~~~---~~~V~~v~fsP~~ 687 (721)
|+-+..+ ...|.++.|--.+
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCc
Confidence 6554433 3456777775544
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0018 Score=71.97 Aligned_cols=225 Identities=9% Similarity=0.098 Sum_probs=128.6
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----------Ce
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----------GS 522 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----------Gt 522 (721)
+.=+-+.||| .|.+|++-...| |.+|--++-..++.+ .|. .|.-+.|+ |..++|+|-|.. ..
T Consensus 211 WTetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp-~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 211 WTETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---YHP-GVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred ceeeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---cCC-CceeeecC-CccceEEEecCCccccCcccCCCce
Confidence 3456689999 999999998888 899986554444444 454 58889998 688999986532 57
Q ss_pred EEEEEcCCCCCcccccc--cC---------------------cceeEec------------cCCCeEEEEEecCCCEEEE
Q 004969 523 LKLYDIRHMPPSIRGMH--YG---------------------AGTVTFD------------EFDQLTSVHVNSMDELFLA 567 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~--~~---------------------~~~~~~~------------~~~~V~sv~~sp~~~~lls 567 (721)
++|||+.+|...-.... .. .+...+. ....|....|+|.+..++.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 89999999765211000 00 0000000 1122444445554444443
Q ss_pred EeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE----------ECCCcEEEEECCCCCceeEE
Q 004969 568 SGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS----------SFDQDVKLWDLRQKPIQPCY 632 (721)
Q Consensus 568 ~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg----------s~DgtIrIWDlrs~~~~~~~ 632 (721)
=.. -..+.+-.+.+++.+++-.- |.-.=..+.|-..| .+|+.- +.=..+.|+.++.. ..++-
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireK-dIpve 440 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREK-DIPVE 440 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeecc-CCCce
Confidence 221 12344444444444443332 22222345566666 344432 11123566666654 34555
Q ss_pred EecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCC--c---cccc-ccCeEEEEECCCCC
Q 004969 633 TASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGD--P---FRDF-NMSILAAYTRPSSK 688 (721)
Q Consensus 633 ~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~--~---l~~~-~~~V~~v~fsP~~~ 688 (721)
.+.-....+..+|-|.|..+++-+. ..++.+|.+... . ++.+ ....+.+.|+|.|+
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGR 505 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCc
Confidence 5555556668999999988776543 347888887722 1 2222 34677899999993
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0036 Score=72.93 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=123.2
Q ss_pred EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC-eEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCc
Q 004969 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-VLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPS 534 (721)
Q Consensus 461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~-V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~ 534 (721)
|++ .+..+|.|+.+|.|.+.+-. -+.++.++ ++... |..+ |.-...++|++.+.|+ .++||+++.-+..
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq--a~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ--AYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EcC-CCceEEEeeccccEEEeccc-ceeeehhe--ecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 566 77899999999988887743 33446666 44444 4444 3324446888887765 5999999874321
Q ss_pred c--cccccCccee--Ee-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--C--CcEEEEEccccCCCeEEEEEcCCC
Q 004969 535 I--RGMHYGAGTV--TF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDIN--S--GRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 535 ~--~~~~~~~~~~--~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~--s--~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
- .-...+. .. .+ ....++.+++++.+-..++.|-.+|.|..+.-. . |... .+......+|+++++..++
T Consensus 106 ~sP~c~~~~r-i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHR-IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-DYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeee-eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-eeeccCCCCceeeEEecCC
Confidence 1 0000000 01 11 134678999998887777777789999988422 1 2211 1221256799999999888
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
...+.++. -..|.+|.+.... .....+..++... +.++++....+++++ +..+++|+..+.
T Consensus 184 ~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 184 KSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred ceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 54333333 3569999998543 2233355555555 777776555455555 568999998754
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.79 E-value=0.0018 Score=79.53 Aligned_cols=199 Identities=15% Similarity=0.157 Sum_probs=129.2
Q ss_pred eEEEEEeCCCCCEEEEEEC---C---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTL---D---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLY 526 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~---D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIW 526 (721)
-..|+|-. ||.++|+.+. . +.|+||+-+ |....+-. .-.+--.+++|- |.|+++++... ...|.+|
T Consensus 212 ~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEE
Confidence 34689999 9999999875 2 589999987 65544332 222334578997 78898888764 3456666
Q ss_pred EcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsP 603 (721)
.-++-+. ..-...+ .....|..+.|++++..+++.-.|. |.+|-..+-. ..+.+.-.....+..+.|+|
T Consensus 287 ErNGLrh-------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 287 ERNGLRH-------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred ecCCcEe-------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 6554221 1111122 2234689999999999998877655 9999988754 22333321334455699999
Q ss_pred CCCcEEEEEECCCcEEEEEC----CCCC------------------------------ceeEEEecCCCCeEEEEEecCC
Q 004969 604 HSPSIFATSSFDQDVKLWDL----RQKP------------------------------IQPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDl----rs~~------------------------------~~~~~~~~~~~~~vsl~fSpdg 649 (721)
..+..+.....+|.+..++. ..+. +...+.+.-...++.++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 98887888777676655443 2110 0011222233344589999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004969 650 HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~ 667 (721)
..+++-..||.+.+|...
T Consensus 439 ~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CeEEEEECCCCEEEEEec
Confidence 889999999999988854
No 312
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.75 E-value=1.6e-05 Score=78.36 Aligned_cols=104 Identities=25% Similarity=0.368 Sum_probs=54.4
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccc-cccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (721)
.+|+++||.++...+ +..|.. =..=+.|+|++|+|..+. +...|++|++|.|. +|.|..+.+ ...+++|+|+.
T Consensus 42 ~~L~~L~Ls~N~I~~--l~~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQITK--LEGLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCcc--ccCccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHHHHcCCCcce
Confidence 378999999965543 332222 011267999999999995 33469999999999 999999998 88999999999
Q ss_pred hccccccchhhhH-HHHHhhcCCcchhhccce
Q 004969 177 LSMCETRVGNLWT-TIAALSKLPSLAELRFQN 207 (721)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (721)
|+|++|-|.+.=. -.-.+.+||+|+-|.++.
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999986511 124578999999997654
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.73 E-value=0.0028 Score=69.98 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=112.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
.+..+++++.+|.|.-+|..+|+.+......+. ...... .++..++.++.+|.+..+|..+++.......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----- 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG---ADGGLVFVGTEKGEVIALDAEDGKELWRAKL----- 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE---EcCCEEEEEcCCCEEEEEECCCCcEeeeecc-----
Confidence 357888999999999999999998877654321 111222 2467788889999999999988765332111
Q ss_pred eEeccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-----EEEEEcCCCCcEEEEEECCCcE
Q 004969 545 VTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-----NVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 545 ~~~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V-----~sI~fsPdg~~lLaSgs~DgtI 618 (721)
...+.+ ... .++.+++++.++.+..||.++|+.+..+.. ..... .+.... ++ .++.+..++.+
T Consensus 134 -----~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v 202 (377)
T TIGR03300 134 -----SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALTLRGSASPVIA-DG--GVLVGFAGGKL 202 (377)
T ss_pred -----CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEE-CC--EEEEECCCCEE
Confidence 111111 111 356788888899999999999999888763 21111 111121 23 57778888999
Q ss_pred EEEECCCCCceeEEEecCCCC---e---EEEEEec--CCCEEEEEeCCCcEEEEEcC
Q 004969 619 KLWDLRQKPIQPCYTASSSKG---N---VMVCFSP--DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 619 rIWDlrs~~~~~~~~~~~~~~---~---vsl~fSp--dg~~Lasgs~Dg~I~VWDl~ 667 (721)
..+|.++++..-........+ . ..+.-+| .+..+++++.+|.++.||..
T Consensus 203 ~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 203 VALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred EEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 999998885432222111000 0 0000011 34566667777888888775
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.71 E-value=0.00034 Score=72.64 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=129.2
Q ss_pred eEEEEEeCC-CCCEEEEEECCCeEEEEECCCCe-------------------------------------EEE----Eee
Q 004969 456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENEN-------------------------------------IVS----YIP 493 (721)
Q Consensus 456 V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~-------------------------------------~i~----~l~ 493 (721)
|..+.|... .-..++..+.|.+|++|.+.... .+. .+.
T Consensus 88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence 666777652 33567777899999999864320 011 011
Q ss_pred cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCC
Q 004969 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYS 571 (721)
Q Consensus 494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~D 571 (721)
...|.-.|.++.|+ .+...++++ .|=.|.+|+++........+.-.+ ..+ .-..-|++..|||.. ..+..+++.
T Consensus 168 aNaH~yhiNSiS~N-sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP--~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 168 ANAHPYHINSISFN-SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKP--HNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred cccceeEeeeeeec-Cchheeeec-cceeeeeccccccCCceEEEeccC--ccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 13677788899997 566666664 567899999886443221111000 000 001237888898875 455566778
Q ss_pred CcEEEEECCCCcE------EEEE---------ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969 572 KNIALYDINSGRR------LQVF---------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS 636 (721)
Q Consensus 572 g~IrlWDl~s~~~------v~~l---------~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~ 636 (721)
|.|++-|++.... +... -..-...|..+.|++.| +++++-. --+|+|||++..+ .++.+.+-
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k-~pikTi~~ 320 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAK-NPIKTIPM 320 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEeccccc-CCceeech
Confidence 9999999994321 1110 01134568889999999 6776554 4689999998753 34544432
Q ss_pred CC------------Ce----EEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 637 SK------------GN----VMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 637 ~~------------~~----vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|. .. ..+.||.|...+++|+..+..-+|...
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 21 11 258899999999999988888777643
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.66 E-value=0.0034 Score=75.55 Aligned_cols=203 Identities=13% Similarity=0.108 Sum_probs=128.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC----C
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR----H 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~----~ 530 (721)
.|.++.|.. ++.-++.+..+|.|.+-|.++......- .-.+.|.+++|+ ++..+++-.+.++++.+.+-. .
T Consensus 70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWS-PDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEec-ccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeec-CCCcEEEEEeCCcEEEEEeccccchh
Confidence 588999999 8888999999999999998876543221 224789999999 788999988888888775442 1
Q ss_pred CCCc----------ccccccCcceeEec----------------------cCCCeEEEEEecCCCEEEEEe----CC-Cc
Q 004969 531 MPPS----------IRGMHYGAGTVTFD----------------------EFDQLTSVHVNSMDELFLASG----YS-KN 573 (721)
Q Consensus 531 ~~~~----------~~~~~~~~~~~~~~----------------------~~~~V~sv~~sp~~~~lls~g----~D-g~ 573 (721)
.++. +..-.+ .....|. ..+.=++++|--+|.++++.+ .+ ..
T Consensus 145 E~~L~~d~~~~sk~v~VGwG-rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWG-RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceeccc-ccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1111 000000 0000111 111224589977777888754 24 78
Q ss_pred EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCCCCceeEE--EecCCCCeE-EEEEec
Q 004969 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS---SFDQDVKLWDLRQKPIQPCY--TASSSKGNV-MVCFSP 647 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg---s~DgtIrIWDlrs~~~~~~~--~~~~~~~~v-sl~fSp 647 (721)
|++||.. |..-.+-.. ..+.-.+++|-|.| .++++- +.|+.|.+|....- ....+ ..+.....+ .++|+.
T Consensus 224 irV~drE-g~Lns~se~-~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEP-VEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEeccc-chhhcccCc-ccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCc-cccccccCCcccccchheeeecC
Confidence 9999987 443222211 33344579999988 677764 34667989885432 11112 223333424 899999
Q ss_pred CCCEEEE---EeCCCcEEEEEcC
Q 004969 648 DDHYLLG---KGSGTSMFVQSLR 667 (721)
Q Consensus 648 dg~~Las---gs~Dg~I~VWDl~ 667 (721)
++..|++ ......|++|-+.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCCceeeeecccccceEEEEEec
Confidence 9999997 4444459999865
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.64 E-value=0.0069 Score=61.77 Aligned_cols=179 Identities=10% Similarity=0.045 Sum_probs=108.1
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969 474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (721)
Q Consensus 474 ~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V 553 (721)
.+|+|..||..+|+.+.......-.....+... .++..+++++.++.+..||..+++.... +.....+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~----------~~~~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWR----------FDLPGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEE----------EECSSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEE----------eeccccc
Confidence 378999999999999988865221222332222 2567788889999999999988765221 1111111
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-cccc--CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969 554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMH--KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 554 ~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l-~~~h--~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~ 630 (721)
.... ...++.++++..++.++.+|..+|+.+... .... ............+ ..++.+..++.|..+|.++++..-
T Consensus 69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE
T ss_pred ccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEE
Confidence 1111 135677777788889999999999999984 3210 0111222222235 578888889999999999996644
Q ss_pred EEEecCCCCe---------E-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 631 CYTASSSKGN---------V-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 631 ~~~~~~~~~~---------v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
.......... . .+.+. ++ .++.++.++.+.-+|+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~t 192 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLAT 192 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTT
T ss_pred EeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCC
Confidence 4444221111 1 22222 34 677777777543338873
No 317
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.64 E-value=1.2e-05 Score=64.92 Aligned_cols=59 Identities=31% Similarity=0.497 Sum_probs=53.0
Q ss_pred ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++|.+|.|+ .|+|+.++.+.|..||+|+.|.|.+|+|..+ .-.++..||+|++|.++.|
T Consensus 1 p~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEET-SSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence 478999999 6799999999999999999999999999877 3357999999999998875
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0013 Score=75.91 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969 444 GNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 444 gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV 523 (721)
|.+..+..+.+++++++||| ..-.++.|-.-|.+.+|...+.+.- ++.. .|..+|..+.|+ ++|+.++|+..-|.|
T Consensus 50 GEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h-tv~~-th~a~i~~l~wS-~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 50 GEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH-TVVE-THPAPIQGLDWS-HDGTVLMTLDNPGSV 125 (1416)
T ss_pred CCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceee-eecc-CCCCCceeEEec-CCCCeEEEcCCCcee
Confidence 45555556777899999999 7788999999999999998765443 3333 789999999998 799999999999999
Q ss_pred EEEEcC
Q 004969 524 KLYDIR 529 (721)
Q Consensus 524 rIWDi~ 529 (721)
.+|...
T Consensus 126 ~lwr~d 131 (1416)
T KOG3617|consen 126 HLWRYD 131 (1416)
T ss_pred EEEEee
Confidence 999876
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0022 Score=74.13 Aligned_cols=144 Identities=11% Similarity=0.160 Sum_probs=103.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC----CCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~----d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~ 540 (721)
+|.++++++.||+|.|-.+-+++...++. -..++.+|+++|. ....+++||.-| +.++.-+--..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn------- 150 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN------- 150 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------
Confidence 78999999999999999998888777664 3478999999853 356899999998 66654332111
Q ss_pred CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-----CeEEEEEcCCCCcEEEEEECC
Q 004969 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-----HINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-----~V~sI~fsPdg~~lLaSgs~D 615 (721)
...++.-...++|.++.| .|+.++-+.++| |++||..+++.+..+...+.. .-..+.|.++. .++.|= .
T Consensus 151 k~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW-~ 224 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGW-G 224 (846)
T ss_pred ccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEec-C
Confidence 112233445678999999 677777777666 899999999988877753321 23457888765 555554 4
Q ss_pred CcEEEEECCC
Q 004969 616 QDVKLWDLRQ 625 (721)
Q Consensus 616 gtIrIWDlrs 625 (721)
.+|+|..++.
T Consensus 225 d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 DSVKICSIKK 234 (846)
T ss_pred CeEEEEEEec
Confidence 4688888873
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.47 E-value=0.0013 Score=76.76 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~ 589 (721)
++..++.|+....+..+|+++.+........ ...|.-+. .++..+.+|...|+|.+-|.++.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---------a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---------ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc---------CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee
Confidence 4567788887778888899886542111111 11233333 356778888889999999999999999999
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecC-CCEEEEEeCCC
Q 004969 590 DMHKEHINVVKFSNHSPSIFATSSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD-DHYLLGKGSGT 659 (721)
Q Consensus 590 ~~h~~~V~sI~fsPdg~~lLaSgs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpd-g~~Lasgs~Dg 659 (721)
. |.+.|..+.. .| ++++++|. |..|+|||+|..+. +..+.-+.++.-+.|+|. ...+++.+..|
T Consensus 215 a-Hs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 215 A-HSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred c-cccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccCchhhhhcccccceEEEEeccc
Confidence 6 9999987766 46 78888875 66799999998643 333333444445778884 35667778889
Q ss_pred cEEEEEcC--CCc------ccccccCeEEEEECCCCCcccccccEEEEecCCCccc
Q 004969 660 SMFVQSLR--GDP------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC 707 (721)
Q Consensus 660 ~I~VWDl~--g~~------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~ 707 (721)
...+-|.. +.| +.+-...+....+++.+ ..+|.|......+
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-------~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-------DALAFGDHEGHVN 337 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCC-------ceEEEecccCcEe
Confidence 88888832 222 11223348888999999 9999998884433
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.38 E-value=0.0045 Score=69.87 Aligned_cols=111 Identities=8% Similarity=0.056 Sum_probs=77.2
Q ss_pred eEEEEEecC-CCEEEEEe----CCCc----EEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969 553 LTSVHVNSM-DELFLASG----YSKN----IALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW 621 (721)
Q Consensus 553 V~sv~~sp~-~~~lls~g----~Dg~----IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW 621 (721)
..++.|+.. +..+.+.. .+|. ..+|++..++. +....-..+..|.+.+++|+. ..++.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEE
Confidence 355666553 33344432 2332 45677665432 222222378899999999998 799999999999999
Q ss_pred ECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 622 DLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 622 Dlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|...+.. ... ...-.+..++|+|+|.++++|+..|.+.+||+.
T Consensus 287 D~~~~~t--~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 287 DTTRGVT--LLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EcCCCee--eee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 9987632 221 233345589999999999999999999999976
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0013 Score=70.78 Aligned_cols=161 Identities=9% Similarity=0.111 Sum_probs=100.4
Q ss_pred EEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEE
Q 004969 478 IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH 557 (721)
Q Consensus 478 I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~ 557 (721)
|++.+..+-+....++ +|...|.+++|+|....++..++.+.+|+|.|+++... ...+....++++++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----------vssy~a~~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----------VSSYIAYNQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEeccccee----------eeheeccCCceeee
Confidence 6666666555555444 77889999999977777999999999999999998432 34455557899999
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCcE-EEEEcc-ccCCCeEEEEE------cCCCCcEEEEEECCCcEEEEECCCC--
Q 004969 558 VNSMDELFLASG-YSKNIALYDINSGRR-LQVFAD-MHKEHINVVKF------SNHSPSIFATSSFDQDVKLWDLRQK-- 626 (721)
Q Consensus 558 ~sp~~~~lls~g-~Dg~IrlWDl~s~~~-v~~l~~-~h~~~V~sI~f------sPdg~~lLaSgs~DgtIrIWDlrs~-- 626 (721)
|.-+...++.+| ..|.|.+||++..+. +..+.+ ....+|..++. .+.| .+++..+.+ ...|.+...
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc
Confidence 988887776666 589999999996542 223321 12234444333 2233 244444433 456666432
Q ss_pred CceeEEEecCCCCeEEEEEecCCCEEE
Q 004969 627 PIQPCYTASSSKGNVMVCFSPDDHYLL 653 (721)
Q Consensus 627 ~~~~~~~~~~~~~~vsl~fSpdg~~La 653 (721)
...++..+......+++.+++-.+.++
T Consensus 320 ~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 320 CLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCCcccccCCCcceeeeeecCccceEE
Confidence 222233333333334666666444444
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.37 E-value=0.013 Score=65.28 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=111.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCC--CC---eEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--NS---VLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~--~~---V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~ 540 (721)
..++.++.+|.+..+|..+|+.+...+..... .. ...+.-+| -.++.++.++.+|.+..+|..+++.......+
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 45777888999999999999876554321100 00 00111111 12456777888999999999987653321110
Q ss_pred CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI 620 (721)
....+. ..++.+++++.+|.+..+|..+|+.+............+.... + ..++.++.||.+..
T Consensus 286 -----------~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ 349 (394)
T PRK11138 286 -----------SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHW 349 (394)
T ss_pred -----------CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEE
Confidence 011122 2567888888999999999999988776542111112222222 3 36788899999999
Q ss_pred EECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 621 WDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 621 WDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
.|..+++..-...+.+ .... +..+ .+..|+.++.||.++.++.
T Consensus 350 ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999986544443322 1222 2222 2457888899999988764
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.01 Score=68.45 Aligned_cols=199 Identities=17% Similarity=0.270 Sum_probs=123.6
Q ss_pred CeEEEEEeCC-----------CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--C-CEEEEEeCC
Q 004969 455 RPRQFEYHPS-----------ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--P-SKLIAGSDN 520 (721)
Q Consensus 455 ~V~~lafsP~-----------dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~-~~LaSgs~D 520 (721)
.|+.+.|.|. ..-+||++...|.|.+||...+..+..+. .|.++|..++|.+.. . .+|++-...
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--~~~~~~qdl~W~~~rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--HSNDSVQDLCWVPARDDSRDVLLAIHGS 134 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc--CCCcchhheeeeeccCcchheeEEecCC
Confidence 5888888872 22467888889999999999888877776 678899999997532 2 567777778
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-------CcEEEEEcccc
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINS-------GRRLQVFADMH 592 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s-------~~~v~~l~~~h 592 (721)
.++-+|+..+|+...+.-..+. ...++.+.|-+ .++...|..|.+.+-+.-. |+..+.-.. |
T Consensus 135 s~lvLwntdtG~k~Wk~~ys~~---------iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd-~ 204 (1062)
T KOG1912|consen 135 STLVLWNTDTGEKFWKYDYSHE---------ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD-H 204 (1062)
T ss_pred cEEEEEEccCCceeeccccCCc---------ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC-c
Confidence 8999999999876433322222 23445555533 3344444444444443321 111111111 1
Q ss_pred CC----------------C---------eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec
Q 004969 593 KE----------------H---------INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP 647 (721)
Q Consensus 593 ~~----------------~---------V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp 647 (721)
.. . ....+|+|.-.++++ ....+.+.++|+.-..+..+..++..... -+.|-|
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvpier~~ak-fv~vlP 282 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVPIERGGAK-FVDVLP 282 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEEeccCCcc-eeEecc
Confidence 11 0 113567887633333 44567799999988766555444432222 345555
Q ss_pred --CCCEEEEEeCCCcEEEEEcC
Q 004969 648 --DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 648 --dg~~Lasgs~Dg~I~VWDl~ 667 (721)
....|+++..||.+.+|-.+
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEee
Confidence 55689999999999999755
No 325
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.27 E-value=3.8e-05 Score=85.93 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=68.0
Q ss_pred ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHH-HHHhhcCCcchhh
Q 004969 127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT-IAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 203 (721)
=++|+|++|+|..|- -+-.+.||++|||. -|+|++++|+-|-||.||..|.+-.|+++=.-++ .+|..-||+|+.|
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs-~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLS-HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhccc-ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 367999999999885 34478999999999 8999999999999999999999999999843344 4556679999999
Q ss_pred ccce
Q 004969 204 RFQN 207 (721)
Q Consensus 204 ~~~~ 207 (721)
||+.
T Consensus 398 ~l~g 401 (873)
T KOG4194|consen 398 RLTG 401 (873)
T ss_pred eecC
Confidence 9873
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.19 E-value=6.5e-05 Score=84.40 Aligned_cols=163 Identities=15% Similarity=0.252 Sum_probs=108.3
Q ss_pred CccCeEEEEEeCCCCCEEEEEE----CCCeEEEEECCCC--eEEEEeecC-CCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 452 RSFRPRQFEYHPSISCLMVFGT----LDGEIVVVNHENE--NIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 452 ~~~~V~~lafsP~dg~~LasGs----~DG~I~IWdl~tg--~~i~~l~~~-~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
+....++++|++-|.+.||+|- .|..+.|||+.++ .+....... +-.....+++|. .+..++++|.....++
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVH 179 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhh
Confidence 3346889999998888888885 3678999999876 222221111 233456689997 7788889999899999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCC-CcEEEEEcc---ccCCCeEEE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD-INS-GRRLQVFAD---MHKEHINVV 599 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD-l~s-~~~v~~l~~---~h~~~V~sI 599 (721)
++|++..... ........+..+.+.|-....++...||.|-+|| .+. ..+++.+.. .....+..+
T Consensus 180 ifdlRqs~~~----------~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 180 IFDLRQSLDS----------VSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhh----------hhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 9999852221 1111223456677777444444445599999999 443 223333321 122358999
Q ss_pred EEcCCCCcEEEEEECC-CcEEEEECCC
Q 004969 600 KFSNHSPSIFATSSFD-QDVKLWDLRQ 625 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~D-gtIrIWDlrs 625 (721)
+|.|..+.++++...| ++|+++|+..
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred EeccCCcchhhhhccCcceEEEecccc
Confidence 9999876677777765 6899999874
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.10 E-value=0.044 Score=66.47 Aligned_cols=181 Identities=12% Similarity=0.178 Sum_probs=117.0
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
+.|.++.|. .+++.++.+..+|.|.+-|.++..... .-.....|.+++|+|++..++..+..+++.+-+
T Consensus 69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~ei----------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEI----------VGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEe-cccceEEEEecCCcEEEEcccccceee----------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 689999998 788888888999999999888754321 111235689999999999998888777765543
Q ss_pred C----CCCcEE-------------------EEEccc--------------------cCCCeEEEEEcCCCCcEEEEE---
Q 004969 579 I----NSGRRL-------------------QVFADM--------------------HKEHINVVKFSNHSPSIFATS--- 612 (721)
Q Consensus 579 l----~s~~~v-------------------~~l~~~--------------------h~~~V~sI~fsPdg~~lLaSg--- 612 (721)
- -..+++ ..|.|. -.+.=++|.|--|| .++|+.
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~ 216 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVE 216 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEe
Confidence 2 111111 122210 00112358999999 677773
Q ss_pred --ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE---eCCCcEEEEEcCCCccccc-------ccCeEE
Q 004969 613 --SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK---GSGTSMFVQSLRGDPFRDF-------NMSILA 680 (721)
Q Consensus 613 --s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg---s~Dg~I~VWDl~g~~l~~~-------~~~V~~ 680 (721)
...+.|+|||.. +....... +...-.-+++|-|.|..+++- +.|+.|.++.-+|-.-..+ ...+..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 223789999987 43322111 111111279999999999975 3466799998775321111 234889
Q ss_pred EEECCCCCcccccccEEEEe
Q 004969 681 AYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASg 700 (721)
++|+.++ .+||.-
T Consensus 295 L~Wns~s-------diLAv~ 307 (1265)
T KOG1920|consen 295 LAWNSNS-------DILAVV 307 (1265)
T ss_pred eeecCCC-------Cceeee
Confidence 9999999 676663
No 328
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0078 Score=69.41 Aligned_cols=151 Identities=14% Similarity=0.197 Sum_probs=111.0
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-----------CCEEEEEeCCCeEEE
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-----------PSKLIAGSDNGSLKL 525 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-----------~~~LaSgs~DGtVrI 525 (721)
.++.|+| +.+||-|+.. .|.|-|..+-+.++.+. .|...|+.|.|.|.. .-.++++...|.|.+
T Consensus 19 ~A~Dw~~--~GLiAygshs-lV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 19 NAADWSP--SGLIAYGSHS-LVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccCc--cceEEEecCc-eEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 4578888 3667777654 68888988888888887 788999999997521 125777788899999
Q ss_pred EEcCCCCCcccccccCcceeEec-cCCCeEEEEEecC---C-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSM---D-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK 600 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~---~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~ 600 (721)
||...+.. ...+. +.+++..++|-+. . +.+++-....++.+|+..+|+..+.... ......|+.
T Consensus 94 ~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~ 162 (1062)
T KOG1912|consen 94 VDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFR 162 (1062)
T ss_pred EEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeee
Confidence 99987543 12222 2345677777543 2 4566667788999999999999998875 455677899
Q ss_pred EcCCCCcEEEEEECCCcEEEEEC
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDl 623 (721)
+.|-.++.+..-+..|.+-+-+.
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEec
Confidence 99988777777777777766654
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.012 Score=67.50 Aligned_cols=202 Identities=11% Similarity=0.150 Sum_probs=118.1
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~ 539 (721)
+++. .+++++.|+.-|.+++|+-..|.... ++..+..+.+.....+ ....++|.|+..|.|.++-+..+.+.-....
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 3344 66999999999999999988665433 3322333444455555 6677888899999999998887544211111
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG----RRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~----~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D 615 (721)
.+. ...|...|++++|++++-.+++|...|.|.+-.+.+. ...+.+.. ..+.|-.+.... + .++++...
T Consensus 117 t~~---d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~q-~-~LLVStl~- 189 (726)
T KOG3621|consen 117 TPC---DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYLQ-S-YLLVSTLT- 189 (726)
T ss_pred ccc---cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeeccc-c-eehHhhhh-
Confidence 111 1125677999999999999999999999999888762 11222222 456777776653 3 34444332
Q ss_pred CcEEEEECCCCCceeEEEecC-CCCeEEEEEec-----CCCEEEEEeCCCcEEEEE--cCCCccccc
Q 004969 616 QDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSP-----DDHYLLGKGSGTSMFVQS--LRGDPFRDF 674 (721)
Q Consensus 616 gtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSp-----dg~~Lasgs~Dg~I~VWD--l~g~~l~~~ 674 (721)
. ..++++..+....+-.-+. .......+|-| +...|+++--. .++|. +.|..+++|
T Consensus 190 r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 190 R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTH 253 (726)
T ss_pred h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEee
Confidence 2 3355555443222211111 11122344444 33466655443 45554 445555444
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.032 Score=65.41 Aligned_cols=175 Identities=11% Similarity=0.189 Sum_probs=111.0
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-----cE
Q 004969 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-----NI 574 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-----~I 574 (721)
.|+++. +.+..++.|+.+|.|-+.+-.- .......... + +.|..+........+++.+.|+ .+
T Consensus 27 ~isc~~---s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~------~-siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 27 AISCCS---SSTGSVVIGTADGRVVILNSSF--QLIRGFQAYE------Q-SIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred ceeEEc---CCCceEEEeeccccEEEecccc--eeeehheecc------h-hhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 455443 5778899999999987776443 2112211111 1 1234444433345777777653 59
Q ss_pred EEEECCCC------cEE---EEEc--c-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC---CCCCceeEEEecCCCC
Q 004969 575 ALYDINSG------RRL---QVFA--D-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL---RQKPIQPCYTASSSKG 639 (721)
Q Consensus 575 rlWDl~s~------~~v---~~l~--~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl---rs~~~~~~~~~~~~~~ 639 (721)
++||+..- .++ +.+. . ....++.+++.+.+- ..+|.|-.+|.|..+.- |.......+...+...
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP 173 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence 99999742 223 2222 1 135678889999886 79999999999988852 2222233445556666
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCCC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~~ 687 (721)
++.+++..++.-++-...-..|.+|.+.|++ +..++.++.+..+++..
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence 6689999988874334446789999998776 23446688999998877
No 331
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.0011 Score=76.92 Aligned_cols=172 Identities=23% Similarity=0.245 Sum_probs=115.1
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--Cc
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KN 573 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--g~ 573 (721)
.|...-++++|+ .+.+.|+.|+..|.|+++++.+|... ...-.|..+|+-+.-+.+|..+++.+.- .-
T Consensus 1099 d~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e---------~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1099 DETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSME---------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccccceeeEEee-cCCceEEeeeccceEEEEEccCcccc---------ccccccccccccccccCCcceeeeeccccCch
Confidence 677889999998 78899999999999999999997652 1223355677888777888888877643 35
Q ss_pred EEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-Ee--cCCCCeEEEEEecCC
Q 004969 574 IALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-TA--SSSKGNVMVCFSPDD 649 (721)
Q Consensus 574 IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-~~--~~~~~~vsl~fSpdg 649 (721)
..+|++.+ +.+.++|.+ -.++.|+... ..-+.|..-....+||+.++.....+ .. ..........|+|+.
T Consensus 1169 saLW~~~s~~~~~Hsf~e-----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE-----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHHhccccccCccccccc-----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 78999874 566666653 4567888765 34444555566899999987432221 11 111122368899998
Q ss_pred CEEEEEeCCCcEEEEEcCCC-ccccccc--CeEEEEECCCCC
Q 004969 650 HYLLGKGSGTSMFVQSLRGD-PFRDFNM--SILAAYTRPSSK 688 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~g~-~l~~~~~--~V~~v~fsP~~~ 688 (721)
..++- || -+||++.. .++.|.. .-....|||.+.
T Consensus 1243 ~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1243 TLILN---DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGN 1279 (1516)
T ss_pred ceEee---Cc--eeeeeccHHHHhhhhhheecccccccCCCc
Confidence 88873 33 37999832 1222211 223357999983
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.95 E-value=0.17 Score=54.69 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=108.7
Q ss_pred CCEEEEEEC----------CCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 466 SCLMVFGTL----------DGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 466 g~~LasGs~----------DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
..++++|+. .|.|.++++... ..+..+......++|++++-. .+ .|+.+. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence 467887764 299999999874 233333223457899999864 44 444443 379999999986
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEE-ccccCCCeEEEEEcCCCCcEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVF-ADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l-~~~h~~~V~sI~fsPdg~~lL 609 (721)
+.. .....+.....+.++.. .++.+++|..-+.+.++..+. +..+..+ .......++++.|-+++ ..+
T Consensus 118 ~~l-------~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~ 187 (321)
T PF03178_consen 118 KTL-------LKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTI 187 (321)
T ss_dssp SSE-------EEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEE
T ss_pred ccc-------hhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEE
Confidence 611 11222223335666665 467899888777777764432 2222222 22245678999999777 589
Q ss_pred EEEECCCcEEEEECCC-------C--CceeEEEecCCCCeEEE---EEec--CCC------EEEEEeCCCcEE-EEE
Q 004969 610 ATSSFDQDVKLWDLRQ-------K--PIQPCYTASSSKGNVMV---CFSP--DDH------YLLGKGSGTSMF-VQS 665 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs-------~--~~~~~~~~~~~~~~vsl---~fSp--dg~------~Lasgs~Dg~I~-VWD 665 (721)
+.+..+|.+.++.... + .......+.-+...+++ ++.| .+. .++.++.+|.|. +-.
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 9999999999988763 1 22334444444444444 3344 122 477788899887 444
No 333
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.95 E-value=0.00019 Score=80.58 Aligned_cols=105 Identities=24% Similarity=0.336 Sum_probs=85.4
Q ss_pred HHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc-cccccccceeeEEeccccccccccccccc
Q 004969 90 FALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNMIGEFKRIHTLNLDYSTSLTSFKEDCF 168 (721)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 168 (721)
+.+...++-.++++..+.++ .++.+++ -....|+.++||.|.|.+ +|-.+.|..||.|+|. +|.|+.+... .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l 114 (414)
T KOG0531|consen 42 LLLQLVPSDLEEIDLIFNLD-GSDEDLV----ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-L 114 (414)
T ss_pred cccccccchhhhhcchhccc-cchhhhH----HHhHhHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-h
Confidence 56677777777777777766 2334442 456678899999999999 7779999999999999 9999999765 8
Q ss_pred ccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
.+|++|..|++++|+|..+ -.|.+|+.|.+|.+
T Consensus 115 ~~~~~L~~L~ls~N~I~~i----~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL----EGLSTLTLLKELNL 147 (414)
T ss_pred hhhhcchheeccccccccc----cchhhccchhhhee
Confidence 8999999999999999988 66777777888854
No 334
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0003 Score=76.69 Aligned_cols=121 Identities=23% Similarity=0.341 Sum_probs=99.7
Q ss_pred ecCCccccchHHHHHHHHHhcccceEeeccCC-chhhHHHH-HhhcCCccceEeecccccccccc---cccccceeeEEe
Q 004969 79 RSGTSCMLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLN 153 (721)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ 153 (721)
.+=++|.|+|.-++.++-.+- -|.+++|+.| ..++...+ +.+|+ =|.|||++|.+..+. ..|.|++|..||
T Consensus 202 L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~---L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQT---LQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhH---HhhccccCCcccccccccccccccchhhhh
Confidence 456899999999998887774 4778899887 33333222 33332 367999999999887 678999999999
Q ss_pred cccccccccccc-cc-----cccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 154 LDYSTSLTSFKE-DC-----FSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 154 ~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+. ++.|+++.+ || -...|+|++|....|.|. =|..+.-|.+|++|+.|||
T Consensus 278 ls-~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 278 LS-STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cc-ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhc
Confidence 99 999999987 77 677999999999999998 7999999999999999974
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.086 Score=57.01 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=108.0
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEee--C----CCCEEEEEeC----------CCeEEEEEcCCCCCcccccc
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK--K----YPSKLIAGSD----------NGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp--~----d~~~LaSgs~----------DGtVrIWDi~~~~~~~~~~~ 539 (721)
+.|++.|..+.+.+..+....+ ..+++++... . ...+++.|.. .|.|.++++.........
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~-- 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK-- 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E--
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE--
Confidence 4689999988888777765432 3455444332 1 1456776653 289999999884110000
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI 618 (721)
-.........++|++++-- ++.++++. ++.|.+|++...+ ....-.......+.++... + ++++.|.....+
T Consensus 79 -l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv 151 (321)
T PF03178_consen 79 -LKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred -EEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence 0112233446778888864 55544444 5889999999877 4433321133456666554 4 588889888888
Q ss_pred EEEECCC--CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 619 KLWDLRQ--KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 619 rIWDlrs--~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.++..+. .+...+..-......+++.|-++++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8774443 323333322222223378888677799999999999999876
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.91 E-value=0.16 Score=57.49 Aligned_cols=195 Identities=12% Similarity=0.217 Sum_probs=101.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE-EcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY-DIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW-Di~~~~~ 533 (721)
.|+.+.++| +++++++ +.||.-.|+.....+.... +.-....|. . .+.+|+-...++|.|+ +++....
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEe-c-CccEEEEECCCeEEEEEcCccccc
Confidence 588999999 8888888 5588888888554444332 234567897 3 5567777778899996 4433110
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. .+.....+..+- . |..++..+. +.|.+||+.+++.++.+.. . +|..|.|+++| .+++-.+
T Consensus 103 ---------k--~i~~~~~~~~If--~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--~-~vk~V~Ws~~g-~~val~t 163 (443)
T PF04053_consen 103 ---------K--SIKLPFSVEKIF--G-GNLLGVKSS-DFICFYDWETGKLIRRIDV--S-AVKYVIWSDDG-ELVALVT 163 (443)
T ss_dssp ----------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTS-SEEEEE-
T ss_pred ---------e--EEcCCcccceEE--c-CcEEEEECC-CCEEEEEhhHcceeeEEec--C-CCcEEEEECCC-CEEEEEe
Confidence 0 111111122222 2 666666554 4899999999999999873 2 38999999998 6777776
Q ss_pred CCCcEEEEECCCC------------CceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--cccccccCeE
Q 004969 614 FDQDVKLWDLRQK------------PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFRDFNMSIL 679 (721)
Q Consensus 614 ~DgtIrIWDlrs~------------~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~~~~~~V~ 679 (721)
.+ .+.|++.... ....+... ...+.+.+|..+ -++++.. . .++-+ +.|. .++.+..++.
T Consensus 164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d-~fiYtT~-~-~lkYl-~~Ge~~~i~~ld~~~y 236 (443)
T PF04053_consen 164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED-CFIYTTS-N-HLKYL-VNGETGIIAHLDKPLY 236 (443)
T ss_dssp S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT-EEEEE-T-T-EEEEE-ETTEEEEEEE-SS--E
T ss_pred CC-eEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC-EEEEEcC-C-eEEEE-EcCCcceEEEcCCceE
Confidence 54 6777765443 22222221 222227888866 4444443 2 66552 3333 2344444555
Q ss_pred EEEECCC
Q 004969 680 AAYTRPS 686 (721)
Q Consensus 680 ~v~fsP~ 686 (721)
=+...|.
T Consensus 237 llgy~~~ 243 (443)
T PF04053_consen 237 LLGYLPK 243 (443)
T ss_dssp EEEEETT
T ss_pred EEEEEcc
Confidence 5555553
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.89 E-value=0.21 Score=56.08 Aligned_cols=174 Identities=11% Similarity=0.160 Sum_probs=90.4
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEE
Q 004969 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTS 555 (721)
Q Consensus 477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~s 555 (721)
.|+||+.. |+.+..+.... +.|.++.|. +...|+....||+++++|+.+.. ... . ........ ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt--~~e~LvvV~~dG~v~vy~~~G~~-~fs-l--~~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWT--DDEELVVVQSDGTVRVYDLFGEF-QFS-L--GEEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCC-CCEeEEEEECC--CCEEEEEEC--CCCeEEEEEcCCEEEEEeCCCce-eec-h--hhhccccCcccccccc
Confidence 59999976 77788777644 789999997 45677788899999999997533 100 0 00000000 0011122
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEc---c----c--cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 556 VHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA---D----M--HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 556 v~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~---~----~--h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
..+ ...+.++. ..++.+.+..--... ..+.+. + . +........++.++ ...+....++.+.+-+-..
T Consensus 133 ~~~-~~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 133 IWF-YKNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENS 209 (410)
T ss_pred ccc-CCCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccc
Confidence 222 12233333 333444333222111 111111 0 0 00000012234344 3444444555566444332
Q ss_pred CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.. .+......+.++.||+|+++|.-..+|.+.|.+..
T Consensus 210 ~~-----~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 210 FK-----QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred cc-----cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 11 12233455689999999999999999999888755
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.87 E-value=0.08 Score=61.40 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=72.0
Q ss_pred CCcEEEEECCC-----CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----------eeEEEec
Q 004969 571 SKNIALYDINS-----GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----------QPCYTAS 635 (721)
Q Consensus 571 Dg~IrlWDl~s-----~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----------~~~~~~~ 635 (721)
++.|.+.|.++ .+.+..+. -......+.++|||.++++++..+.+|.|.|+.+.+. ..+.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 45688999887 34445454 5667888999999976777777899999999987431 1133444
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 636 SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 636 ~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
...++.-.+|+++|....+--.|..|-.|++.
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 45667778999999888888889999999986
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.85 E-value=0.092 Score=58.51 Aligned_cols=185 Identities=11% Similarity=-0.013 Sum_probs=109.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC--------e-EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS--------V-LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~--------V-~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
.+..+++++.+|.+.-+|..+|+.+........... + ..+.. .++.++.++.+|.+.-+|.++++...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 346788888899999999999998877654221110 0 01121 35677888899999999999987644
Q ss_pred cccccCcceeEeccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC----CeEEEEEcCCCCcEEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE----HINVVKFSNHSPSIFA 610 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~----~V~sI~fsPdg~~lLa 610 (721)
..... ..+.+ -.+ .++.++++..++.+.-+|..+|+.+..+...... ...+.... ++ .++
T Consensus 145 ~~~~~----------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~--~v~ 209 (394)
T PRK11138 145 QTKVA----------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG--GAI 209 (394)
T ss_pred cccCC----------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--EEE
Confidence 32211 11111 111 2567777888999999999999999888631110 00111111 22 466
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCe------EEEEEec--CCCEEEEEeCCCcEEEEEcC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGN------VMVCFSP--DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~------vsl~fSp--dg~~Lasgs~Dg~I~VWDl~ 667 (721)
.++.+|.+..+|..+++..-........+. ..+.-+| .+..+++++.+|.++.+|..
T Consensus 210 ~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 210 VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 677889999999888754322221111000 0011122 24455566667777766665
No 340
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.81 E-value=0.55 Score=49.12 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=88.3
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
+.+. +|++||.- .|..|.|=..++. .++...+.... ...-.-++|+ +++..||.+...|+|+++|+.+...- .
T Consensus 4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred eecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeE-E
Confidence 3445 77776664 5667777665432 23333332222 2345689998 79999999999999999999874331 1
Q ss_pred ccccCcceeEeccCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCC-----cEEEE--EccccCCCeEEEEEcC
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSM------DELFLASGYSKNIALYDINSG-----RRLQV--FADMHKEHINVVKFSN 603 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~------~~~lls~g~Dg~IrlWDl~s~-----~~v~~--l~~~h~~~V~sI~fsP 603 (721)
...... ....-...|..+.|-.. ...+++...+|.++=|-+..+ +..++ |...+...|.++.++|
T Consensus 80 I~p~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred cCcccc--cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 111110 01112234566655322 236777788888877765322 22333 3333577899999999
Q ss_pred CCCcEEEEEEC
Q 004969 604 HSPSIFATSSF 614 (721)
Q Consensus 604 dg~~lLaSgs~ 614 (721)
.. ++|++||.
T Consensus 158 ~h-~LLlVgG~ 167 (282)
T PF15492_consen 158 KH-RLLLVGGC 167 (282)
T ss_pred CC-CEEEEecc
Confidence 98 67666654
No 341
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00048 Score=70.78 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=61.1
Q ss_pred ccceEeecccccccccccccccceeeEEeccccc--ccccccccccccccccchhccccccchhhhHHHHHhhcCCcchh
Q 004969 125 LMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYST--SLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE 202 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (721)
-+-|-|.+++.+.-.+-.++.++.|.+|.|. +| ++..==+---.+.|+|+.|.+++|+|..+ .|+++|.+|..|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhh
Confidence 3344455777778888888999999999998 77 55432222233449999999999999974 89999999999988
Q ss_pred hccce
Q 004969 203 LRFQN 207 (721)
Q Consensus 203 ~~~~~ 207 (721)
|..++
T Consensus 121 Ldl~n 125 (260)
T KOG2739|consen 121 LDLFN 125 (260)
T ss_pred hhccc
Confidence 85433
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.80 E-value=0.082 Score=47.90 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=68.0
Q ss_pred eEEEEEeCCC---CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSI---SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~d---g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
|+++++...+ .+-|++|+.|..|+||+-+ ..+..+.. ...|++++-. .+..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e---~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE---TDKVTSLCSL--GGGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec---ccceEEEEEc--CCCEEEEEecCCEEEEEeCccee
Confidence 5666666533 3689999999999999854 56666652 4678888865 45789999999999999875422
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCC----CEEEEEeCCCcEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMD----ELFLASGYSKNIA 575 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~----~~lls~g~Dg~Ir 575 (721)
.+...+..+.++++..-+ ..+++|=.+|.|-
T Consensus 75 ------------WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ------------WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ------------eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222333345666553322 2577766777654
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.79 E-value=0.66 Score=48.64 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccC--
Q 004969 465 ISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-- 541 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-- 541 (721)
.++.++.|+.+| +.+++.. ......... ...|..+... ++-+.+++-+ ||.+.++++..-..........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEe-cccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 568899999999 9999983 333333332 3349999988 4445555443 4999999998744422110000
Q ss_pred ---cceeEeccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCC-----cEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 542 ---AGTVTFDEFDQLTSVH--VNSMDELFLASGYSKNIALYDINSG-----RRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 542 ---~~~~~~~~~~~V~sv~--~sp~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
...........+...+ -...+...++....+.|.+|..... +..+.+. -...+.+++|.+ +.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---NKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC---CEEEE
Confidence 0001112222344444 2234455566666678888887653 4556665 568899999984 45777
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCC----------CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSK----------GNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR 672 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~----------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~ 672 (721)
|..++ ..+.|+.++....+....... .+..+.--+++.+|++- +..-.+-+..|.+.+
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r 221 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSR 221 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCc
Confidence 76554 778899977655554332211 23333334456777753 444455566666544
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.78 E-value=0.13 Score=57.52 Aligned_cols=203 Identities=9% Similarity=0.064 Sum_probs=109.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------CCCCeEEEEEee----CCC---CEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG------AMNSVLGLCWLK----KYP---SKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~------H~~~V~sl~fsp----~d~---~~LaSgs~DG 521 (721)
.|++++.| +-.++|.|..+|.+.|.|++....+..-.... ....|+++.|.- .++ -.+++|...|
T Consensus 88 ~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 88 PVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred cEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 58889886 56899999999999999998888776643322 345688898862 111 3788899999
Q ss_pred eEEEEEcCC-CCCcccccccCcceeEeccCCCeEEEE-EecC--------------------CCEEEEEeCCCcEEEEEC
Q 004969 522 SLKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVH-VNSM--------------------DELFLASGYSKNIALYDI 579 (721)
Q Consensus 522 tVrIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~-~sp~--------------------~~~lls~g~Dg~IrlWDl 579 (721)
.+.+|.+-- ...... .........+.++|..+. ++.+ -+.+++...+..+|++..
T Consensus 166 ~v~~fkIlp~~~g~f~---v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFS---VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp EEEEEEEEE-GGG-EE---EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CEEEEEEecCCCCceE---EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999998852 111000 000001112334444443 2211 123555556788999999
Q ss_pred CCCcEEEEEccccCCCeEEEEEc-----CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC--CeE-EEEEecCCCE
Q 004969 580 NSGRRLQVFADMHKEHINVVKFS-----NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--GNV-MVCFSPDDHY 651 (721)
Q Consensus 580 ~s~~~v~~l~~~h~~~V~sI~fs-----Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~~v-sl~fSpdg~~ 651 (721)
.+.+..++... .......+.+- ..+ ..|++-..+|.|++|.+..-+......+.... ... ..+++++|+.
T Consensus 243 ~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 243 PKSKGAHKSFD-DPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp T---EEEEE-S-S-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred CCCcccceeec-cccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 98877665543 33333444442 234 67888899999999999886544333332111 111 4678999998
Q ss_pred EEEEeCCCcEEEEE
Q 004969 652 LLGKGSGTSMFVQS 665 (721)
Q Consensus 652 Lasgs~Dg~I~VWD 665 (721)
++-.+ ...+.++.
T Consensus 321 ~~~~g-psE~~l~s 333 (395)
T PF08596_consen 321 FYWTG-PSEIQLFS 333 (395)
T ss_dssp EEE-S-SSEEEEEE
T ss_pred EEEeC-cccEEEEE
Confidence 87665 33444443
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.37 Score=53.62 Aligned_cols=221 Identities=10% Similarity=0.131 Sum_probs=135.5
Q ss_pred eEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+..+.+.| ++ +..++-.....+.+.+............ +- ..-.+++.++......+....++.|.+.|..+....
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVTQSLSV-GG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeecccccceeeeeccC-CC-ccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 55677788 55 4444433333566655552222221211 11 233466666444446666667789999996664331
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.. ... ......+++++++..+.++.. ++++.+.|..+++.+..... -..+ ..+++.|+|...+++
T Consensus 110 ~~--------~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 110 GS--------IPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred eE--------eee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECCCCCeEEEE
Confidence 11 111 113467889899988888765 68899999999998888553 2233 889999999556666
Q ss_pred EECCCcEEEEECCCCCceeEE----EecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccccc-----CeE
Q 004969 612 SSFDQDVKLWDLRQKPIQPCY----TASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDFNM-----SIL 679 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~----~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~~~-----~V~ 679 (721)
-..++.|.+.|........ . .......+..+.++|+|.++.+.... +.+...|........... ...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~ 256 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPR 256 (381)
T ss_pred ecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCC
Confidence 6689999999977653321 1 12233444578999999977766544 478888877433322211 344
Q ss_pred EEEECCCCCcccc
Q 004969 680 AAYTRPSSKSEIV 692 (721)
Q Consensus 680 ~v~fsP~~~~~~v 692 (721)
.+..+|+++.-++
T Consensus 257 ~v~~~p~g~~~yv 269 (381)
T COG3391 257 GVAVDPAGKAAYV 269 (381)
T ss_pred ceeECCCCCEEEE
Confidence 5788888854444
No 346
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.74 E-value=0.18 Score=53.73 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=112.2
Q ss_pred eEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcE
Q 004969 501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNI 574 (721)
Q Consensus 501 V~sl~fsp~d~~~LaSgs~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~I 574 (721)
..+++.+|..+..++.+-.-|+ ..+||..+++... .+........+. ...|+++|.+++++=. .|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-~~~a~~gRHFyG------Hg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-RLWAPPGRHFYG------HGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-EEcCCCCCEEec------CEEEcCCCCEEEEeccccCCCcEEE
Confidence 3456667656777777776665 6789998877532 222222222222 3578899999998853 4889
Q ss_pred EEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEEECCCCCceeEEEec
Q 004969 575 ALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF------------------DQDVKLWDLRQKPIQPCYTAS 635 (721)
Q Consensus 575 rlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~------------------DgtIrIWDlrs~~~~~~~~~~ 635 (721)
-|||.. +-+.+.++.. |.-....+.+.|+|+ .|+++.. +..+-.-|.++++......+.
T Consensus 80 gVyd~~~~~~ri~E~~s-~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPS-HGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred EEEECcCCcEEEeEecC-CCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 999999 6677888886 777778889999994 4544421 234555566666654444452
Q ss_pred --CCCCeE-EEEEecCCCEEEEEeCCC-------cEEEEEcCCC---------cccccccCeEEEEECCCC
Q 004969 636 --SSKGNV-MVCFSPDDHYLLGKGSGT-------SMFVQSLRGD---------PFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 636 --~~~~~v-sl~fSpdg~~Lasgs~Dg-------~I~VWDl~g~---------~l~~~~~~V~~v~fsP~~ 687 (721)
.|.-.+ -+++.++|..++..-..| .+.+++..+. ....+...+-++++++++
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 244444 688888888777654443 2334433211 123345678888888887
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.74 E-value=0.083 Score=61.24 Aligned_cols=104 Identities=12% Similarity=0.139 Sum_probs=70.3
Q ss_pred CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcE------------EEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 550 FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRR------------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 550 ~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~------------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
......+.++|++.++++++. +.+|.++|+.+.+. +.+.. -.......+|.++| +...|-.-|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G-~aytslf~ds 396 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRG-NAYTTLFLDS 396 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCC-CEEEeEeecc
Confidence 345678999999999998885 89999999997552 33333 23344567899998 7888888999
Q ss_pred cEEEEECCCC------C-c-eeEEEecCCCCeEE------EEEecCCCEEEEEe
Q 004969 617 DVKLWDLRQK------P-I-QPCYTASSSKGNVM------VCFSPDDHYLLGKG 656 (721)
Q Consensus 617 tIrIWDlrs~------~-~-~~~~~~~~~~~~vs------l~fSpdg~~Lasgs 656 (721)
.|-.||+... . . ..+..+..|..+-- =.-.|||+||++..
T Consensus 397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 9999998761 1 0 11222333332221 23367899988753
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.73 E-value=0.22 Score=52.07 Aligned_cols=181 Identities=8% Similarity=0.150 Sum_probs=97.7
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNI 574 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~I 574 (721)
+-...+.+++|.|.++.++++....+.|...+.++ +. + ..+.+...+..-.+++-.++ .++.+. .++.+
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~v-l-------r~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L 88 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KV-L-------RRIPLDGFGDYEGITYLGNG-RYVLSEERDQRL 88 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-E-------EEEE-SS-SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CE-E-------EEEeCCCCCCceeEEEECCC-EEEEEEcCCCcE
Confidence 55567999999965666777778888888888753 22 1 23344444567788885444 555555 48899
Q ss_pred EEEECCCCc------EEEEEc----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC---CCceeEEEe---c---
Q 004969 575 ALYDINSGR------RLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ---KPIQPCYTA---S--- 635 (721)
Q Consensus 575 rlWDl~s~~------~v~~l~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs---~~~~~~~~~---~--- 635 (721)
.++++.... ....+. ..+...+-.++|+|.+. .++.+-...-.++|.++. ......... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 999884321 112222 12456789999999884 444555565566776654 111111111 1
Q ss_pred CC-CCeEEEEEecC-CCEEEEEeCCCcEEEEEcCCCcccccc------------cCeEEEEECCCC
Q 004969 636 SS-KGNVMVCFSPD-DHYLLGKGSGTSMFVQSLRGDPFRDFN------------MSILAAYTRPSS 687 (721)
Q Consensus 636 ~~-~~~vsl~fSpd-g~~Lasgs~Dg~I~VWDl~g~~l~~~~------------~~V~~v~fsP~~ 687 (721)
.. ....+++++|. |++++-+..+..+..+|..|++...+. ...-.++|.|+|
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 11 12237899995 455566666778888888777543221 147779999999
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0031 Score=73.05 Aligned_cols=106 Identities=8% Similarity=0.082 Sum_probs=82.7
Q ss_pred EEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE
Q 004969 556 VHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC 631 (721)
Q Consensus 556 v~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~ 631 (721)
.+|||..+.+++++ ..|+|.|| ..+|++.+... ..-.+++++|+|.. -.++.|-.-|.+.+|...+.+. ..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt--~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT--YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc--cceehhhhccChHH-HHHhhccccceeEEEecCCcee-ee
Confidence 47999999998887 36889888 46677665544 44567789999987 7888999999999999887542 22
Q ss_pred EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
. ...|..++ .+.|||+|..++++..-|.+.+|...
T Consensus 96 v-~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 V-VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred e-ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2 23344444 89999999999999999999999765
No 350
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.011 Score=64.45 Aligned_cols=163 Identities=11% Similarity=0.021 Sum_probs=111.1
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecCCCEEEEEeC-CCc
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSMDELFLASGY-SKN 573 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~~~~lls~g~-Dg~ 573 (721)
-|...|+.+.- ...+++++++.||.++.|.-..-.. + .-+. ...|-..|.+++.+.++-.+.+++. |..
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isG-v------EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISG-V------EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccc-e------eehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 47777887764 4678999999999999998654111 0 0000 1123355778888788888888777 999
Q ss_pred EEEEECCCCcEEEEEccc-cCCCeEEEEEcCCCC-cEEE-EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC
Q 004969 574 IALYDINSGRRLQVFADM-HKEHINVVKFSNHSP-SIFA-TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD 649 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~-h~~~V~sI~fsPdg~-~lLa-Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg 649 (721)
++++|+.+-..+..++.. -.+.+.. ..+|... ..++ +.-.++.|.++|-+...+...+.-.-|..++ .+.+.|.+
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 999999875544333210 1222221 1222211 1333 3445789999999987766666666677777 89999999
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 004969 650 HYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~g 668 (721)
.-.++....|.|.-|...+
T Consensus 157 Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred cceeeccccceeEeecCCC
Confidence 9999999999999999875
No 351
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0017 Score=67.29 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhCccccccCCCCcChHHHHhhhcc
Q 004969 334 FEKHYRDYMIASLPKLKFLDNLPIRKVDRERATIT 368 (721)
Q Consensus 334 ~~~~yRe~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~ 368 (721)
.-..||..++..||+|+-|||.+++..+-+.|.+.
T Consensus 104 ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred cchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 45789999999999999999999999988877664
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.67 E-value=0.073 Score=48.23 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=71.3
Q ss_pred eEEEEEeeCCC---CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969 501 VLGLCWLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (721)
Q Consensus 501 V~sl~fsp~d~---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW 577 (721)
|++++++..++ +.|++||.|..||+|+-.. ....+...+.|++++-.. ...|+.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEITETDKVTSLCSLG-GGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEecccceEEEEEcC-CCEEEEEecCCEEEEE
Confidence 67777765443 6899999999999998765 133444556677777644 4789999999999999
Q ss_pred ECCCCcEEEEEccccCCCeEEEEEcC---CCCcEEEEEECCCcEE
Q 004969 578 DINSGRRLQVFADMHKEHINVVKFSN---HSPSIFATSSFDQDVK 619 (721)
Q Consensus 578 Dl~s~~~v~~l~~~h~~~V~sI~fsP---dg~~lLaSgs~DgtIr 619 (721)
+- ...++..+ .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 69 ~~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DR--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eC--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 75 44455555 334466665543 3444788898888764
No 353
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.65 E-value=0.00067 Score=51.10 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=29.3
Q ss_pred ceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL 187 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (721)
++|++|.|. .|.|+.|+. -|..||+|+.|++.+|+|.++
T Consensus 1 ~~L~~L~l~-~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLS-NNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEET-SSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEcc-CCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 367888888 778888865 478888888888888888865
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.64 E-value=0.17 Score=56.53 Aligned_cols=207 Identities=15% Similarity=0.116 Sum_probs=113.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-------------------------EEee----------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-------------------------SYIP---------------- 493 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-------------------------~~l~---------------- 493 (721)
.|+.+.|.+ +..-+++|...|.|.||.+...+.. ..+.
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999 7777999999999999975321110 0000
Q ss_pred cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-----CC---CEE
Q 004969 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MD---ELF 565 (721)
Q Consensus 494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~---~~l 565 (721)
.+...++|++++.+ +-.+++.|..+|.+.|.|+++........-.. ....-.....|+++.|.. ++ -.+
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 01346889999975 67799999999999999998754432211100 000111223466676652 11 357
Q ss_pred EEEeCCCcEEEEECC-C--CcEEEEEcc---ccCCCeEEEE-EcCCCC-------------------cEEEEEECCCcEE
Q 004969 566 LASGYSKNIALYDIN-S--GRRLQVFAD---MHKEHINVVK-FSNHSP-------------------SIFATSSFDQDVK 619 (721)
Q Consensus 566 ls~g~Dg~IrlWDl~-s--~~~v~~l~~---~h~~~V~sI~-fsPdg~-------------------~lLaSgs~DgtIr 619 (721)
++|...|.+.+|.+. . +.....+.+ .+.++|..|. |+.+.+ .-++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 788888999999775 1 222222221 2556666655 432210 1234444577899
Q ss_pred EEECCCCCceeEEEecCCCCeE--EEEE-----ecCCCEEEEEeCCCcEEEEEcCC
Q 004969 620 LWDLRQKPIQPCYTASSSKGNV--MVCF-----SPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 620 IWDlrs~~~~~~~~~~~~~~~v--sl~f-----Spdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++...+.+.. ++.. ..... .+.+ ...+..|++-..+|.++++.+.+
T Consensus 239 v~~~~~~k~~--~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 239 VFKPPKSKGA--HKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EE-TT---EE--EEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred EEeCCCCccc--ceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 9999887542 2222 22222 3445 33677888889999999999873
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.2 Score=54.04 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=117.6
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--cccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRG 537 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~--~~~~ 537 (721)
.|.|..+.++.+--..+.|.-|+..+|+... +. +.+.+.++... ..+..|+++... +.+++.+.+.. ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~---~p~~~~~~~~~-d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP---SPGGFSSGALI-DAGGRLIACEHG--VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE---CCCCcccceee-cCCCeEEEEccc--cEEEeccCCceeEEecc
Confidence 4777445567777788999999998775432 22 22334555543 445566665443 55666654332 1111
Q ss_pred cccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
...... ....+.+.+.|+|...+.... -|.++.+|. .+..++.+.. +-...+.|+|+||+.
T Consensus 104 ~~~~~~------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~ 175 (307)
T COG3386 104 PEDGLP------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGK 175 (307)
T ss_pred ccCCCC------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCC
Confidence 110110 122466777787776665433 133445554 4666665554 566778999999995
Q ss_pred cEEEEEECCCcEEEEECCC--C---CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC-cEEEEEcCCCcccccccC
Q 004969 607 SIFATSSFDQDVKLWDLRQ--K---PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT-SMFVQSLRGDPFRDFNMS 677 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs--~---~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg-~I~VWDl~g~~l~~~~~~ 677 (721)
.++++=+..+.|.-|++.. + ............+.- .++...+|.+.+++..+| .|.+|+..|+.+..+..+
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP 253 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP 253 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECC
Confidence 4555555568888887752 1 111122222222332 688888999886555554 899999988776655443
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.58 Score=52.06 Aligned_cols=198 Identities=11% Similarity=0.086 Sum_probs=131.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~ 531 (721)
.+..++.++...+..+....++.|.+.|..+.+....... +. ....+++. +++..+..+.. ++++.+.|..+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCC
Confidence 4677888884444666666779999999888777776653 32 56678887 55555555444 688888888775
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEE-E---EccccCCCeEEEEEcCCCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ-V---FADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~-~---l~~~h~~~V~sI~fsPdg~ 606 (721)
..... .+....+ ..+++.|++..++++. .++.|.+.|.......+ . ... -......+.++|+|.
T Consensus 151 ~~~~~---------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~ 219 (381)
T COG3391 151 KVTAT---------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGN 219 (381)
T ss_pred eEEEE---------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCC
Confidence 54221 1112233 7889999999777776 68999999977665553 1 011 233456789999995
Q ss_pred cEEEEEECC--CcEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCC-CcEEEEEcCC
Q 004969 607 SIFATSSFD--QDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSG-TSMFVQSLRG 668 (721)
Q Consensus 607 ~lLaSgs~D--gtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~g 668 (721)
+..++-..+ +.+...|..++..... ...... ....+..+|+|.++.+.... +.+.+-|...
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTAT-DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEe-ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 455544444 6899999988754322 112222 34478999999999888544 7888888763
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.56 E-value=0.0064 Score=41.20 Aligned_cols=39 Identities=33% Similarity=0.581 Sum_probs=33.2
Q ss_pred CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (721)
Q Consensus 582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD 622 (721)
++++..+.. |...|.++.|+|.+ ..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKG-HTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEe-cCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 345566665 88999999999988 7999999999999996
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.53 E-value=0.039 Score=65.98 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=102.9
Q ss_pred CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee----CCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK----KYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp----~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|..+-.+..+.++|+.. .....|+-.|++.|+++..+... ...+|..++-.. ..+...+.|-.+..+..||.+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 344444455466666654 34578999999999999999852 234466664210 123455667788899999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
-....+.. .....+.......|++- ..+++|++|+.+|.||+||- .|+..++.-.+-+.+|..|..+.||. ++
T Consensus 561 ~~~~k~v~----~~~k~Y~~~~~Fs~~aT-t~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGk-wi 633 (794)
T PF08553_consen 561 LSGNKLVD----SQSKQYSSKNNFSCFAT-TEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGK-WI 633 (794)
T ss_pred CCCCceee----ccccccccCCCceEEEe-cCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCc-EE
Confidence 64321110 01112333345677766 56789999999999999994 44444443333789999999999994 44
Q ss_pred EEEECCCcEEEEEC
Q 004969 610 ATSSFDQDVKLWDL 623 (721)
Q Consensus 610 aSgs~DgtIrIWDl 623 (721)
++.+ +..+-++++
T Consensus 634 laTc-~tyLlLi~t 646 (794)
T PF08553_consen 634 LATC-KTYLLLIDT 646 (794)
T ss_pred EEee-cceEEEEEE
Confidence 4333 456777775
No 359
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.45 E-value=0.0058 Score=65.35 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=77.3
Q ss_pred cccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccc------cccccc-ceeeEEeccccccccc----cc
Q 004969 99 DQKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKL------NMIGEF-KRIHTLNLDYSTSLTS----FK 164 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~l~~~~~~~~~~----~~ 164 (721)
+.+|+.++|.++.|.. .++..+.+. -.-+.|+|+.|++... ..++.+ .+|..|+|. .+.++. --
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHH
Confidence 6799999999988853 445555555 5688899998888631 233456 788999999 566662 11
Q ss_pred ccccccccccchhccccccchh-hhHH-HHHhhcCCcchhhccceee
Q 004969 165 EDCFSCMPNLICLSMCETRVGN-LWTT-IAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 209 (721)
...|..+++|+.|.|.+|.+.. -... .+++.++++|++|.+..|-
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 2467788899999999998873 1222 3467788899999877663
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.012 Score=66.76 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=73.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE-EEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~-sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~ 630 (721)
.+.-+.|+|.-+.+|.+..+|.+.++-+. .+.++++.- |+..++ +++|.||| +++|.|-.||+|++-|+.++....
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCcee
Confidence 46788999999999999999999999888 888888885 677777 99999999 899999999999999999885433
Q ss_pred EEEecCCCCeEEEEEe
Q 004969 631 CYTASSSKGNVMVCFS 646 (721)
Q Consensus 631 ~~~~~~~~~~vsl~fS 646 (721)
-+.+.......++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 2223333333366665
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.85 Score=47.21 Aligned_cols=128 Identities=10% Similarity=0.044 Sum_probs=88.2
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~ 539 (721)
...++...+++.|+..|.+.--|.++|+.+..-.. ...|-+-+.. -+++++.|...|.+.+.+.+++....
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w---- 87 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIW---- 87 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE--ECCEEEEEEccCcEEEEEecchhhee----
Confidence 34454567889999999999999999988765332 2334433332 46789999999999999999976522
Q ss_pred cCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 540 YGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
.|...+.|. .....++++.+..++.|++.+..|.++...+.+.+- ..+...+-+..|
T Consensus 88 ------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~ 145 (354)
T KOG4649|consen 88 ------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAP 145 (354)
T ss_pred ------eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecC
Confidence 221111111 122346889999999999999999999999988773 233333445555
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.08 Score=59.66 Aligned_cols=185 Identities=14% Similarity=0.073 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCCEEEEEE---CC-CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE--EcC
Q 004969 456 PRQFEYHPSISCLMVFGT---LD-GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY--DIR 529 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs---~D-G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW--Di~ 529 (721)
+..-.|+| ++..++--+ .. ..+.++++.+++........++. ..-+|+|....++++...||...|| |+.
T Consensus 195 ~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 195 ILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 55567888 555544332 22 46999999988876666544443 3456885444455666778876665 554
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
++.. ..+....+.. ..=.|+|+|..++-+++ .| .|.++|+..+...+... ..+.-..-.|+|+|.
T Consensus 271 ~~~~--~~Lt~~~gi~--------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~ 338 (425)
T COG0823 271 GKNL--PRLTNGFGIN--------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGD 338 (425)
T ss_pred CCcc--eecccCCccc--------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCC
Confidence 4331 2122221111 24468899999988875 44 47777777665533322 222222778999994
Q ss_pred cEEEEEECCCc--EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 607 SIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 607 ~lLaSgs~Dgt--IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
.++.....+|. |.+.|+.++.. ...+......-.-.|.|+|..+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEeccC
Confidence 44444433454 67777776643 2222222222246788888877655433
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.14 Score=57.76 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=90.5
Q ss_pred CCeEEEEEeeCCCCEEEEE---eCC-CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCc
Q 004969 499 NSVLGLCWLKKYPSKLIAG---SDN-GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKN 573 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSg---s~D-GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~ 573 (721)
..+..-+|+ +++..++-. ... ..+.++|+.+++.... ..+ ...-..-+|+|+|..++.+.. ||.
T Consensus 193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------~~~--~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------LNF--NGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCcccee--------ecc--CCccCCccCCCCCCEEEEEECCCCC
Confidence 455566777 444433322 122 4589999998765211 111 122234578899998887764 554
Q ss_pred --EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE--EEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969 574 --IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK--LWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 574 --IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr--IWDlrs~~~~~~~~~~~~~~~vsl~fSpdg 649 (721)
|.+.|+.++...+ +.. ..+.-..-.|+|+|..++.+.+..|.-. ++|...+.. ...+...... ..-.|+|||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCCccee-ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCC
Confidence 7777888776333 542 2222336679999976777777777644 455555433 2223322222 267899999
Q ss_pred CEEEEEeCC-Cc--EEEEEcC
Q 004969 650 HYLLGKGSG-TS--MFVQSLR 667 (721)
Q Consensus 650 ~~Lasgs~D-g~--I~VWDl~ 667 (721)
++++..+.. |. |.+.|+.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CEEEEEeccCCceeeEEeccC
Confidence 999877643 43 5556554
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.31 E-value=0.4 Score=49.51 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=52.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
-+++++.|...|.+++.+.++|.....+... +.|.+-+-..+++..+..|+.|++....|..+.....+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 3578999999999999999999877766542 22332222346789999999999999999998665433
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.30 E-value=0.013 Score=39.56 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=31.4
Q ss_pred eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.....+. .|...|.++.|. +.+..+++++.||.+++|+
T Consensus 3 ~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK--GHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE--ecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 4455555 678899999998 5668999999999999996
No 366
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.28 E-value=0.0098 Score=63.56 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=97.0
Q ss_pred cccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhccc--ceEeeccCCchhh--HHHH---HhhcCC
Q 004969 52 YLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQK--LRVVDLHDSSFGK--DFIR---NLSQRG 124 (721)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~---~~~~~~ 124 (721)
++.+.|...++.-+.. ++.+++. .|.++++.+..+-..+... |+.+++.++.+++ +.++ .....-
T Consensus 9 ~l~~~~~~~~~~~l~~-----L~~l~l~---~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 9 LLKTERATELLPKLLC-----LQVLRLE---GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccchHHHHHHHhh-----ccEEeec---CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3445555555555544 5666663 4677777776666555444 9999999988883 3333 223334
Q ss_pred ccceEeecccccccc--cccccccce---eeEEeccccccccccc----ccccccc-cccchhccccccchh--hhHHHH
Q 004969 125 LMCEVLNLRSSRFRK--LNMIGEFKR---IHTLNLDYSTSLTSFK----EDCFSCM-PNLICLSMCETRVGN--LWTTIA 192 (721)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 192 (721)
-.=+.|+|+++++.. -..++.+.+ |+.|+|. ++.++.-. ...+..+ |+|+.|.|.+|++.. +=.-..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 567889999999873 223344555 9999999 66676311 2345666 999999999999872 212234
Q ss_pred HhhcCCcchhhcccee
Q 004969 193 ALSKLPSLAELRFQNW 208 (721)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (721)
.+..+++|++|++..|
T Consensus 160 ~~~~~~~L~~L~l~~n 175 (319)
T cd00116 160 ALRANRDLKELNLANN 175 (319)
T ss_pred HHHhCCCcCEEECcCC
Confidence 6777888999987654
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.041 Score=63.31 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=84.0
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE-
Q 004969 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC- 631 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~- 631 (721)
|.--++...+.+++.|++-|.+++|+-..++....-.++..+.+.....+++. +++|.|+..|.|.++-+........
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcce
Confidence 33445556889999999999999999887765443332244556677788887 8999999999999998877432222
Q ss_pred EEecC---CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 632 YTASS---SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 632 ~~~~~---~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+..+. |...| +++|++++..+++|...|.|..-.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21121 33344 899999999999999999998776653
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.12 E-value=1.3 Score=48.53 Aligned_cols=238 Identities=13% Similarity=0.142 Sum_probs=123.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC----------------CCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----------------MNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H----------------~~~V~sl~fsp~d~~~LaSgs 518 (721)
.+....|+| +|+.+|... ++.|.+++..++...+ +...|- -+.-.++-|+ +++++|+...
T Consensus 44 ~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~ 119 (353)
T PF00930_consen 44 KLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLR 119 (353)
T ss_dssp TBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEE
T ss_pred ccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEE
Confidence 467789999 899988876 5789999988774433 322220 1123467798 6777776654
Q ss_pred C-CCeEEEEEcC---CCC---Cccccc-------------------ccCc-ceeEe-----ccCCCeEEEEEecCCCEEE
Q 004969 519 D-NGSLKLYDIR---HMP---PSIRGM-------------------HYGA-GTVTF-----DEFDQLTSVHVNSMDELFL 566 (721)
Q Consensus 519 ~-DGtVrIWDi~---~~~---~~~~~~-------------------~~~~-~~~~~-----~~~~~V~sv~~sp~~~~ll 566 (721)
. +..|+.+.+. ... +..... .... ..+.. .....+..+.|.+++..++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 3 3334443322 111 000000 0000 01111 1123378899988888455
Q ss_pred EEe--CC---CcEEEEECCCCcEEEEEccccCCCe---EEEEEc-CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969 567 ASG--YS---KNIALYDINSGRRLQVFADMHKEHI---NVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS 637 (721)
Q Consensus 567 s~g--~D---g~IrlWDl~s~~~v~~l~~~h~~~V---~sI~fs-Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~ 637 (721)
+.- .+ ..+.++|..++.............| ....|. +++..++.....||.-+||-+........ .+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC
Confidence 443 22 3477788887765444432233333 255554 77766777777888766654443222222 33333
Q ss_pred CCeE--EEEEecCCCEEE-EEeCCC----cEEEEEcC-CCccccc---ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 638 KGNV--MVCFSPDDHYLL-GKGSGT----SMFVQSLR-GDPFRDF---NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 638 ~~~v--sl~fSpdg~~La-sgs~Dg----~I~VWDl~-g~~l~~~---~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.-.+ .+.|+++++.|+ ++..++ .++.-++. +...+.. ......+.|+|+++ .++.++++.
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~------y~v~~~s~~ 349 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK------YYVDTYSGP 349 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS------EEEEEEESS
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC------EEEEEEcCC
Confidence 3334 588999887665 444322 34444555 4333322 12225899999985 455555543
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.028 Score=63.86 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=63.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+.-+.|+| .-.++|.+..+|.|.+..+. -+.+.+++. |...++ +++|. ++|+.++.|-.||+|++.|++++..
T Consensus 22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~--p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI--PGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC--CCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCc
Confidence 477899999 88999999999999999988 666777763 445565 99998 7899999999999999999999654
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.99 E-value=3 Score=46.63 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=113.7
Q ss_pred CeEEEEEeCCCCCEEEEE-ECCC----eEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCC--------
Q 004969 455 RPRQFEYHPSISCLMVFG-TLDG----EIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDN-------- 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasG-s~DG----~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~D-------- 520 (721)
.+..+.++| +++++|.+ +..| +|+++|+++|+.+... .. ..-..+.|. ++++.|+....+
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----~~~~~~~W~-~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----PKFSSVSWS-DDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----EESEEEEEC-TTSSEEEEEECSTTTSS-CC
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----cccceEEEe-CCCCEEEEEEeCcccccccC
Confidence 355788999 88888865 3333 5999999999776532 21 112239998 565555444322
Q ss_pred ---CeEEEEEcCCCCCcccccccCcceeEeccCC--C-eEEEEEecCCCEEEEEeC---C-CcEEEEECCCC----cEEE
Q 004969 521 ---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD--Q-LTSVHVNSMDELFLASGY---S-KNIALYDINSG----RRLQ 586 (721)
Q Consensus 521 ---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~--~-V~sv~~sp~~~~lls~g~---D-g~IrlWDl~s~----~~v~ 586 (721)
..|..|.+.+.... ....+.... . ...+..++++.+++.... + ..+.+.|+..+ ....
T Consensus 199 ~~~~~v~~~~~gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp GCCEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred CCCcEEEEEECCCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 23778888775431 122332222 2 467888899988776543 3 45888898875 2233
Q ss_pred EEccccCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCCCCce--eEEEecCCCCeEEEEEecCCCEEEEEe-CCC-
Q 004969 587 VFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQ--PCYTASSSKGNVMVCFSPDDHYLLGKG-SGT- 659 (721)
Q Consensus 587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~---DgtIrIWDlrs~~~~--~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg- 659 (721)
.+.....+....+... .+ .+++.... .+.|.-.++...... ....+.......-..+...+.+|+... .++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS 348 (414)
T ss_dssp EEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred EEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence 3332123333344444 33 44444432 456777787776431 112222222223334445566666544 343
Q ss_pred -cEEEEEcC-CCccccc----ccCeEEEEECCCC
Q 004969 660 -SMFVQSLR-GDPFRDF----NMSILAAYTRPSS 687 (721)
Q Consensus 660 -~I~VWDl~-g~~l~~~----~~~V~~v~fsP~~ 687 (721)
.|+++++. +...... .+.|..+...+.+
T Consensus 349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~ 382 (414)
T PF02897_consen 349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS 382 (414)
T ss_dssp EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-
T ss_pred cEEEEEECCCCcEEeeecCCcceEEeccCCCCCC
Confidence 67889998 6543333 2234444444444
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.99 E-value=0.12 Score=61.92 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=89.1
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc
Q 004969 510 YPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGR 583 (721)
Q Consensus 510 d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~~~lls~g~Dg~IrlWDl~s~~ 583 (721)
+.++|+.- .....|.-.|++.|+. +..+. +....+|..++-.. .....+.|-.+..+..||.|-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKV-V~eW~-------~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKV-VEEWK-------VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcE-EEEee-------cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC
Confidence 33444443 3457788888888764 12111 11112233332211 13456677788899999999532
Q ss_pred --EEEEE--ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969 584 --RLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 584 --~v~~l--~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D 658 (721)
.+..- ........+|++-..+| .+|+|+.+|.||+||--. . .....+++-+.++ .+..+.||+|+++.+ +
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ 638 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-K-RAKTALPGLGDPIIGIDVTADGKWILATC-K 638 (794)
T ss_pred CceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-h-hhhhcCCCCCCCeeEEEecCCCcEEEEee-c
Confidence 33211 11245567888888887 899999999999999533 2 2233445544444 999999999999777 5
Q ss_pred CcEEEEEc
Q 004969 659 TSMFVQSL 666 (721)
Q Consensus 659 g~I~VWDl 666 (721)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 66666664
No 372
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.81 E-value=0.006 Score=75.92 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=39.2
Q ss_pred eEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
++|+|++|++... +.++.+.+|.+|+|. .|.++..-.+.|..|++|+.|.+.+|++... --..+.+|++|++|.+
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYL 219 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEEC
Confidence 4455555555321 224555566666666 4444444444555666666666666554321 1134555566666655
Q ss_pred ce
Q 004969 206 QN 207 (721)
Q Consensus 206 ~~ 207 (721)
..
T Consensus 220 ~~ 221 (968)
T PLN00113 220 GY 221 (968)
T ss_pred cC
Confidence 44
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.70 E-value=0.41 Score=55.12 Aligned_cols=158 Identities=11% Similarity=0.046 Sum_probs=94.9
Q ss_pred EEEeCCCCCEEEEEECCC------------------eEEEEECCCCeEEEEeecCCCCCC----eEEEEEe---eCCCC-
Q 004969 459 FEYHPSISCLMVFGTLDG------------------EIVVVNHENENIVSYIPSFGAMNS----VLGLCWL---KKYPS- 512 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG------------------~I~IWdl~tg~~i~~l~~~~H~~~----V~sl~fs---p~d~~- 512 (721)
.++.+ .+.+++.++.++ .|.-+|..+|+.+-.++...|... ....... ..++.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 34454 456777777665 799999999999888764333110 0000111 01232
Q ss_pred --EEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE------------------eCCC
Q 004969 513 --KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS------------------GYSK 572 (721)
Q Consensus 513 --~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~------------------g~Dg 572 (721)
.++.++.+|.+...|..+++........ ...++..| +.++++ ..+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee------------ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 6788889999999999998764332111 01112212 223322 2367
Q ss_pred cEEEEECCCCcEEEEEccc-cC------CCe--EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe
Q 004969 573 NIALYDINSGRRLQVFADM-HK------EHI--NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~~~-h~------~~V--~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~ 634 (721)
.+.-.|+.+|+.+.+.... +. ... ..+.. .+ ..++.++.||.++.+|..+++..-.+.+
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8999999999998887631 00 111 12222 33 4788888999999999999976444444
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=1.1 Score=47.32 Aligned_cols=168 Identities=12% Similarity=0.149 Sum_probs=110.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+.++.|+| +.+.|++....+.-.||=...|+.+.+++..+-. ..-++.|. .++.++++--.++.+.++.+.......
T Consensus 88 vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence 88999999 6666666666777777777779999999876633 34467776 566777777788999998887654322
Q ss_pred cccccCcceeEecc-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEcc------ccCCCeEEEEEcCCC
Q 004969 536 RGMHYGAGTVTFDE-FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFAD------MHKEHINVVKFSNHS 605 (721)
Q Consensus 536 ~~~~~~~~~~~~~~-~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~------~h~~~V~sI~fsPdg 605 (721)
.........-...+ ......++|.|.+..++.+-.-.-+.||....+.. +..... -.-..|+++.|++..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11110000111112 34578999999999999888766667766553321 111111 012357788999877
Q ss_pred CcEEEEEECCCcEEEEECCCC
Q 004969 606 PSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~ 626 (721)
+.+++-+..++.+.-.|....
T Consensus 245 ~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CcEEEEecCCceEEEEecCCC
Confidence 678888888888888887764
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.64 E-value=0.85 Score=52.52 Aligned_cols=199 Identities=11% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCC----CCCe--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----MNSV--LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H----~~~V--~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~ 539 (721)
+..++.++.+|.|.-.|..+|+.+..+..... ...+ ..+.. .++..++.++.+|.|.-+|.++++.......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 45677788899999999999998876653211 0011 11121 1236888889999999999999876433221
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEe---------CCCcEEEEECCCCcEEEEEccccCC----------------
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASG---------YSKNIALYDINSGRRLQVFADMHKE---------------- 594 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---------~Dg~IrlWDl~s~~~v~~l~~~h~~---------------- 594 (721)
.......+... .+..+ .++.+++++ .++.+..+|..+|+.+..+......
T Consensus 139 ~~~~~~~~~i~---ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 139 NDQVPPGYTMT---GAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred CCCcCcceEec---CCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 11100000000 11111 134555553 3678999999999999887631110
Q ss_pred ---Ce-EEEEEcCCCCcEEEEEECCC------------------cEEEEECCCCCceeEEEecCCCCe-----EEEEEe-
Q 004969 595 ---HI-NVVKFSNHSPSIFATSSFDQ------------------DVKLWDLRQKPIQPCYTASSSKGN-----VMVCFS- 646 (721)
Q Consensus 595 ---~V-~sI~fsPdg~~lLaSgs~Dg------------------tIrIWDlrs~~~~~~~~~~~~~~~-----vsl~fS- 646 (721)
.+ ...++.+.+ .+++.++.++ .|.-+|..+++..-.+....+... ......
T Consensus 214 ~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 01 123444444 4666676554 688899999876544433322111 011111
Q ss_pred ---cCCC---EEEEEeCCCcEEEEEcC-CCccc
Q 004969 647 ---PDDH---YLLGKGSGTSMFVQSLR-GDPFR 672 (721)
Q Consensus 647 ---pdg~---~Lasgs~Dg~I~VWDl~-g~~l~ 672 (721)
-+|. .+++++.+|.++..|.+ |+.+-
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 2343 67778889999988876 55443
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.47 Score=53.36 Aligned_cols=139 Identities=16% Similarity=0.189 Sum_probs=86.2
Q ss_pred EEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-------CEEEEEeCCCcEEEEECCC-Cc-E
Q 004969 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-------ELFLASGYSKNIALYDINS-GR-R 584 (721)
Q Consensus 514 LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-------~~lls~g~Dg~IrlWDl~s-~~-~ 584 (721)
+.++..-..++-.|++.|+. +-.+.....|.-+.+.|+. ..-+.|-++..|.-||+|- +. .
T Consensus 349 l~~~~~~~~l~klDIE~GKI----------VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI----------VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred eeCCCCcCcceeeeccccee----------eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 34445555677778887654 2223333335555555543 2234566788999999984 33 1
Q ss_pred EEEEcc---ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969 585 LQVFAD---MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS 660 (721)
Q Consensus 585 v~~l~~---~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~ 660 (721)
+..-++ .......|.+-..+| ++|+||.+|.||+||- .+.. ....+++-..++ -+..+.+|.+|++.+ +..
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~-AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRR-AKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhh-hhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 111111 123445666666666 8999999999999997 3322 223455655666 788899999999766 666
Q ss_pred EEEEEcC
Q 004969 661 MFVQSLR 667 (721)
Q Consensus 661 I~VWDl~ 667 (721)
+-+-++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 6666654
No 377
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.55 E-value=0.0099 Score=62.25 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=74.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
|-|..+||.-|+. .-+.+=-.--..-++|||+.|+|+......++.+|.-|.|+ .|-++++ ++--.-+-|+++|-+
T Consensus 284 q~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhh-hhhHhhhcCEeeeeh
Confidence 4566677766432 22333333344568899999999999999999999999999 6777776 356677899999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhh
Q 004969 180 CETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.+|.|..| ..|.||=||+-|
T Consensus 360 a~N~iE~L----SGL~KLYSLvnL 379 (490)
T KOG1259|consen 360 AQNKIETL----SGLRKLYSLVNL 379 (490)
T ss_pred hhhhHhhh----hhhHhhhhheec
Confidence 99988777 999999999888
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.38 Score=54.55 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
.....+.++ |+++.++. +.||...|+.....+. . ..+.-...+|.+ .+.+++-...++|.++.
T Consensus 33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~-----------k---~~G~g~~~vw~~-~n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRN-----------K---AFGSGLSFVWSS-RNRYAVLESSSTIKIYK 95 (443)
T ss_dssp S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEE-----------E---EEEE-SEEEE-T-SSEEEEE-TTS-EEEEE
T ss_pred cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCcc-----------c---ccCceeEEEEec-CccEEEEECCCeEEEEE
Confidence 346788888 67777777 5566777777333111 1 112346778877 56677777788899973
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
--+.+....+. ....+..|-. | .+|...+.+ .|.+||+.+++. +..+... +.-.+.|+++|.+++..+ +
T Consensus 96 n~~~~~~k~i~--~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~--i~~i~v~-~vk~V~Ws~~g~~val~t-~ 164 (443)
T PF04053_consen 96 NFKNEVVKSIK--LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKL--IRRIDVS-AVKYVIWSDDGELVALVT-K 164 (443)
T ss_dssp TTEE-TT-------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--E--EEEESS--E-EEEEE-TTSSEEEEE--S
T ss_pred cCccccceEEc--CCcccceEEc---C-cEEEEECCC-CEEEEEhhHcce--eeEEecC-CCcEEEEECCCCEEEEEe-C
Confidence 33333333444 2223444433 6 566666654 899999999854 4444432 223799999999999887 5
Q ss_pred CcEEEEEcC
Q 004969 659 TSMFVQSLR 667 (721)
Q Consensus 659 g~I~VWDl~ 667 (721)
..++|++..
T Consensus 165 ~~i~il~~~ 173 (443)
T PF04053_consen 165 DSIYILKYN 173 (443)
T ss_dssp -SEEEEEE-
T ss_pred CeEEEEEec
Confidence 578887765
No 379
>PHA02713 hypothetical protein; Provisional
Probab=95.42 E-value=0.34 Score=56.69 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=96.9
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCC
Q 004969 465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPP 533 (721)
Q Consensus 465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~ 533 (721)
++.+++.|+.+ ..+..||..+..... ++.......-.+++. .++...+.||.++ ++..||..+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56778888754 357788887765432 211111111123332 3566777777654 478888876432
Q ss_pred cccccccCcceeEeccC-CCeEEEEEecCCCEEEEEeCC-----------------------CcEEEEECCCCcEEE--E
Q 004969 534 SIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYS-----------------------KNIALYDINSGRRLQ--V 587 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~-~~V~sv~~sp~~~~lls~g~D-----------------------g~IrlWDl~s~~~v~--~ 587 (721)
.. .. .+... .....+.. ++...+.||.+ ..+..||..+.+-.. .
T Consensus 380 ~~--~~------~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~ 449 (557)
T PHA02713 380 KM--LP------DMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN 449 (557)
T ss_pred EE--CC------CCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC
Confidence 11 10 00000 01112222 45566666644 247788888765432 2
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSSFD------QDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT- 659 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs~D------gtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg- 659 (721)
+.. .......+.+ +| .+.+.|+.+ ..+..||..+ .+...+..++.......++. -+|...++||.+|
T Consensus 450 m~~-~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 450 FWT-GTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESY 524 (557)
T ss_pred CCc-ccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecce
Confidence 211 1111112222 34 677777764 2467899998 66654444443322222222 2778888888888
Q ss_pred -cEEEEEcCC
Q 004969 660 -SMFVQSLRG 668 (721)
Q Consensus 660 -~I~VWDl~g 668 (721)
.+..||...
T Consensus 525 ~~~e~yd~~~ 534 (557)
T PHA02713 525 MLQDTFNVYT 534 (557)
T ss_pred eehhhcCccc
Confidence 566677653
No 380
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.33 E-value=0.011 Score=44.51 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=32.2
Q ss_pred eEeeccccccccccc-ccccceeeEEeccccccccccc
Q 004969 128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFK 164 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 164 (721)
++|+|++|+|.+|.- ++.+++|.+|+|+ .|.|++|+
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~-~N~i~~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLS-NNPISDIS 40 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEET-SSCCSBEG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEec-CCCCCCCc
Confidence 679999999999999 9999999999999 77999774
No 381
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.28 E-value=0.0077 Score=59.95 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=77.2
Q ss_pred ceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-ccc-ccceeeEEecccccccccccc-cccccccccchhc
Q 004969 102 LRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIG-EFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLS 178 (721)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (721)
.-.+||.|+-.++ +.+|.+. -.=+.|.|.+|+|-.++ .++ -|+.|++|.|. +|||..|.+ +=-..+|+|+.|+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccchhh--cccCCCc-cccceEEecCCcceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccceee
Confidence 4578888855444 3444432 23345999999998775 334 45679999999 999999988 8888999999999
Q ss_pred cccccchhhhH-HHHHhhcCCcchhhcccee
Q 004969 179 MCETRVGNLWT-TIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (721)
+=+|.|...=- -.=.|-|||+|+-|.||+=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999986500 0124789999999999873
No 382
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.28 E-value=0.0087 Score=67.70 Aligned_cols=165 Identities=27% Similarity=0.371 Sum_probs=104.5
Q ss_pred CCCchhhhhhhhhhcccccCCcceEEEeeccccCCCchhHHHHHh------------hc-----CCCcceeeEeecCCcc
Q 004969 22 LPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCM------------QI-----GATEIEAVDVRSGTSC 84 (721)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~ 84 (721)
-|+-+-|.+|+--.+ .++.+--+.|.++||.-..++.. +| +++.++..|+.|.--.
T Consensus 66 a~~~~~l~g~lp~~t-------~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~ 138 (873)
T KOG4194|consen 66 AIDKSRLKGFLPSQT-------QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS 138 (873)
T ss_pred cccccccCCcCccce-------eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc
Confidence 344444555554332 35777777888888875554421 11 3455777777664444
Q ss_pred ccchHH--HHHHHHHhcccceEeeccCCchhhHHHH-HhhcCCccceEeeccccccccccc--ccccceeeEEecccccc
Q 004969 85 MLTGEF--ALSLMHAIDQKLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTS 159 (721)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 159 (721)
..+.|- |+.. ||++||.-|.. ..++ .=+-+|..=+-|||++|+|-.||. +..|..|-||.|. .|+
T Consensus 139 sv~se~L~~l~a-------lrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNr 208 (873)
T KOG4194|consen 139 SVTSEELSALPA-------LRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNR 208 (873)
T ss_pred cccHHHHHhHhh-------hhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc-cCc
Confidence 444442 2222 45666654321 1222 123456777888888888888764 4466778888888 888
Q ss_pred cccccccccccccccchhccccccchhh-hHHHHHhhcCCcchhhccc
Q 004969 160 LTSFKEDCFSCMPNLICLSMCETRVGNL-WTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 206 (721)
||-++---|+.+|+|+.|.+.-|+|.-. |-|.. -||||+-|..|
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~nlklq 253 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQNLKLQ 253 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhhhhhh
Confidence 8888888888888888888888888755 65554 45666666544
No 383
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0058 Score=66.96 Aligned_cols=103 Identities=22% Similarity=0.331 Sum_probs=86.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc----cccccccceeeEEecccccccccccc-ccccccccc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK----LNMIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNL 174 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 174 (721)
.|||+|-|++..-+--+....++.=..|.-|||+.|=|.+ +.++-.|++|+.|||+ +|.+.++.+ .--...+.|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhh
Confidence 4899999999887777777888888999999999887766 4567889999999999 999988766 444578999
Q ss_pred chhccccccchhhhHHHHHhh-cCCcchhhcc
Q 004969 175 ICLSMCETRVGNLWTTIAALS-KLPSLAELRF 205 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 205 (721)
+.|++..+++. |..+.-+. -.|+|.+|-.
T Consensus 200 K~L~l~~CGls--~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 200 KQLVLNSCGLS--WKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred heEEeccCCCC--HHHHHHHHHhCCcHHHhhh
Confidence 99999999999 98887544 4699988854
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.11 Score=62.33 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--
Q 004969 561 MDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-- 637 (721)
Q Consensus 561 ~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-- 637 (721)
.+..+++|++.|.+-..|++..-. ...=. .-+++|++++|+.+| .+++.|-.+|.|.+||+..++........++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 456678888889999999875311 11111 146799999999999 8999999999999999998766555544333
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcE
Q 004969 638 KGNVMVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 638 ~~~vsl~fSpdg~~Lasgs~Dg~I 661 (721)
.+.+.+.+..++..++++...|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCce
Confidence 333456777777888888877763
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.83 E-value=7.3 Score=47.33 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=115.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC------CeEEEEEee---------------CCCCEEEEEeCCCeEE
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN------SVLGLCWLK---------------KYPSKLIAGSDNGSLK 524 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~------~V~sl~fsp---------------~d~~~LaSgs~DGtVr 524 (721)
+..+..++.++.|.-.|..+|+.+-.+....... ....+.+.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4667778888999999999999888776422111 123344431 1234788899999999
Q ss_pred EEEcCCCCCcccccccCcceeEecc----CC----CeEEE-EEecCCCEEEEEeC----------CCcEEEEECCCCcEE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDE----FD----QLTSV-HVNSMDELFLASGY----------SKNIALYDINSGRRL 585 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~----~~----~V~sv-~~sp~~~~lls~g~----------Dg~IrlWDl~s~~~v 585 (721)
-.|.++++.....-. .+.+.+.. .. .+++- .+ .++.+++++. +|.|+-+|.++|+.+
T Consensus 274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V--~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLV--AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEE--ECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999876432111 01111100 00 00110 11 2456776643 588999999999999
Q ss_pred EEEcccc--------CCC--------e-EEEEEcCCCCcEEEEEE------------------CCCcEEEEECCCCCcee
Q 004969 586 QVFADMH--------KEH--------I-NVVKFSNHSPSIFATSS------------------FDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 586 ~~l~~~h--------~~~--------V-~sI~fsPdg~~lLaSgs------------------~DgtIrIWDlrs~~~~~ 630 (721)
..+.... .+. + ...++.|.. .++..+. ..++|.-.|.++++.+-
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 8875211 000 1 223444443 2332221 12456667777776654
Q ss_pred EEEecCCCC--------eEEEEEec-CCC---EEEEEeCCCcEEEEEcC-CCcccc
Q 004969 631 CYTASSSKG--------NVMVCFSP-DDH---YLLGKGSGTSMFVQSLR-GDPFRD 673 (721)
Q Consensus 631 ~~~~~~~~~--------~vsl~fSp-dg~---~Lasgs~Dg~I~VWDl~-g~~l~~ 673 (721)
.+....|.. .+-+.+.. +|+ .++.++.+|.+++.|-+ |+++..
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 444433321 22122333 563 78889999999999987 665543
No 386
>PHA03098 kelch-like protein; Provisional
Probab=94.73 E-value=1.3 Score=51.46 Aligned_cols=190 Identities=8% Similarity=0.053 Sum_probs=92.1
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCC
Q 004969 465 ISCLMVFGTLDG------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP 533 (721)
Q Consensus 465 dg~~LasGs~DG------~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~ 533 (721)
++.+++.|+.++ .+..||..+++....-......... +++. .++..++.||.+ ..+..||..+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 457777777543 5778888876653321111111112 2232 256677777765 3567788776443
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.. .. .......-.+++. -++..++.||.+ ..+..||..+++-...-.-.....-.++.. .++ .
T Consensus 371 ~~--~~------~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~-~ 439 (534)
T PHA03098 371 RE--EP------PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDG-K 439 (534)
T ss_pred ee--CC------CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECC-E
Confidence 11 10 0001111111222 245556666631 458899988765432211000111112222 234 6
Q ss_pred EEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 608 IFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 608 lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
+++.|+.+ ..+.+||..+.+...+..........+++. .++..++.||.+ +.+.+||...+
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 77777653 238899998876544322221111112222 266777777654 35677777643
No 387
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.65 E-value=9.7 Score=42.88 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=90.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC-----eEEEEEeeCCCCEEEEEeCCCeEEEE-Ec
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-----VLGLCWLKKYPSKLIAGSDNGSLKLY-DI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~-----V~sl~fsp~d~~~LaSgs~DGtVrIW-Di 528 (721)
++.++.|+. +.. |++-..||.++++|+. |+....+........ +....+. .+|-.+++ .++.+.+. +.
T Consensus 82 ~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 82 RIVGMGWTD-DEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVLT--GNNRFYVVNNI 155 (410)
T ss_pred CEEEEEECC-CCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC-CCCEEEEC--CCCeEEEEeCc
Confidence 488999988 544 5566789999999987 443111111111112 2222221 23323333 23333332 22
Q ss_pred CCCCCcccccccCcceeE-eccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 529 RHMPPSIRGMHYGAGTVT-FDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~-~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
.... ............. ......... ..++.+....+....++.+.+.+-...+. +. ..+++..++.||+|
T Consensus 156 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng- 228 (410)
T PF04841_consen 156 DEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNG- 228 (410)
T ss_pred cccc-hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCC-
Confidence 2210 1111100000000 000001111 22333444455555556666444332211 21 34689999999999
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL 652 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L 652 (721)
+.+|.-..+|.+.+....-.+....+.......+..+.|.-+...+
T Consensus 229 ~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 229 KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 7888888999998887665544333333333444467777654433
No 388
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.58 E-value=0.015 Score=54.73 Aligned_cols=84 Identities=27% Similarity=0.369 Sum_probs=66.0
Q ss_pred hHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHH
Q 004969 114 KDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI 191 (721)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (721)
-|.+++|+. |.--..++|+.|.|+|+ .+.-.|+-+.||||. +|.|.-+++. |..||-|+.|.+..|.+.-+=.-+
T Consensus 43 ~davy~l~~-~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 43 ADAVYMLSK-GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HHHHHHHhC-CceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccCccccchHHH
Confidence 345555553 33334467777888754 234578889999999 9999999999 999999999999999999888888
Q ss_pred HHhhcCCcc
Q 004969 192 AALSKLPSL 200 (721)
Q Consensus 192 ~~~~~~~~~ 200 (721)
+.|-||-.|
T Consensus 120 ~~L~~l~~L 128 (177)
T KOG4579|consen 120 APLIKLDML 128 (177)
T ss_pred HHHHhHHHh
Confidence 887777766
No 389
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=94.42 E-value=0.023 Score=70.77 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=52.5
Q ss_pred cceEeeccCCchhhH---HHHHhhcCCccceEeecccccccc-c-ccccccceeeEEecccccccccccccccccccccc
Q 004969 101 KLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRK-L-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (721)
+||+++|.++.+... .+.+|. .-++|+|++|.+.. + .-++.+.+|++|+|. +|.++..-..-|..|++|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFS----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA-SNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCC----CCCEEECccCcccccCChhhhhCcCCCeeecc-CCCCcCcCChHHcCcCCcc
Confidence 455666665554321 122221 34567777666542 1 234556666666666 4455443334455666666
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+.+|++... --.++.+|++|++|.+..|
T Consensus 216 ~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 216 WIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECcCCccCCc--CChhHhcCCCCCEEECcCc
Confidence 666666655421 1234555566666655544
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.34 E-value=0.97 Score=51.73 Aligned_cols=119 Identities=9% Similarity=0.064 Sum_probs=74.5
Q ss_pred ccCCCeEEEEEecC----CCEEEEEeCCCcEEEEECC-----CCcEEEEEcc----ccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 548 DEFDQLTSVHVNSM----DELFLASGYSKNIALYDIN-----SGRRLQVFAD----MHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 548 ~~~~~V~sv~~sp~----~~~lls~g~Dg~IrlWDl~-----s~~~v~~l~~----~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....|..+.|.|. -..+++.-..+.|.+|-+. +++.+..-.. ...--.....|+|.. .++++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence 34466899999886 3578888888999999886 2233222111 111122356799998 56665555
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-TSMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~ 667 (721)
...-.+++++.........+.++.-+.+.+|.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 44445677776544333444444344499999999988776433 355899854
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.32 E-value=8 Score=45.05 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=115.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC--Ce-------EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SV-------LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~--~V-------~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
+..++.++.++.|+-.|..+|+.+-.+....... .+ ..++. .+..++.++.|+.+.-.|..+++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4677778888999999999999887765321111 10 11222 235677888999999999999876433
Q ss_pred ccccCcceeEeccCCCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCC---------------
Q 004969 537 GMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE--------------- 594 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~--------------- 594 (721)
....... ....+.+ -.+ .++.++++.. +|.|.-+|.++|+.+..+......
T Consensus 146 ~~~~~~~-----~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 146 KKNGDYK-----AGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred ccccccc-----ccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 2111000 0001111 011 1345565542 689999999999998876531111
Q ss_pred ---------------CeE-EEEEcCCCCcEEEEEECC-----C-----------cEEEEECCCCCceeEEEecCCCC---
Q 004969 595 ---------------HIN-VVKFSNHSPSIFATSSFD-----Q-----------DVKLWDLRQKPIQPCYTASSSKG--- 639 (721)
Q Consensus 595 ---------------~V~-sI~fsPdg~~lLaSgs~D-----g-----------tIrIWDlrs~~~~~~~~~~~~~~--- 639 (721)
.+. .+++.|.. .++..+... + +|.--|+++++.+-.++...|..
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence 111 24566655 344444321 2 56667888887765565544432
Q ss_pred -----eEEEEEecCCC---EEEEEeCCCcEEEEEcC-CCcc
Q 004969 640 -----NVMVCFSPDDH---YLLGKGSGTSMFVQSLR-GDPF 671 (721)
Q Consensus 640 -----~vsl~fSpdg~---~Lasgs~Dg~I~VWDl~-g~~l 671 (721)
.+-+....+|+ .++.+..+|.+++.|-+ |+++
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22233335776 77789999999999976 5554
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.58 Score=52.67 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=98.5
Q ss_pred eEEEEEeCCCCCEEE-EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC------CCEEEEEeCCCeEEEEEc
Q 004969 456 PRQFEYHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY------PSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 456 V~~lafsP~dg~~La-sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d------~~~LaSgs~DGtVrIWDi 528 (721)
|..+-.+..+.++|+ +|.....++-.|++.|+++..+.. |.. |+-+.+.|.. ...-+.|-.|..|.-||.
T Consensus 335 P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 335 PHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred cchhhhhccccceEeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 333333333445444 555666788899999999999874 333 6666665321 122344667788999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
+-....... ......+.......|.+- ..++++++||.+|.||+||- .+...++...+-..+|..|..+.+|. +
T Consensus 412 Rv~~~~kl~---~~q~kqy~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-w 485 (644)
T KOG2395|consen 412 RVQGKNKLA---VVQSKQYSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-W 485 (644)
T ss_pred cccCcceee---eeeccccccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc-E
Confidence 853321100 011112222334556655 45789999999999999997 55544443334889999999999994 4
Q ss_pred EEEEECCCcEEEEECC
Q 004969 609 FATSSFDQDVKLWDLR 624 (721)
Q Consensus 609 LaSgs~DgtIrIWDlr 624 (721)
++ |..+.++.+-++.
T Consensus 486 il-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 486 IL-ATCKTYLLLIDTL 500 (644)
T ss_pred EE-EecccEEEEEEEe
Confidence 43 3335667777654
No 393
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.04 E-value=7.8 Score=42.19 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=116.5
Q ss_pred eEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
...+++++ +++++...- ---.|.|-|+..++.+..+...| +..+ + |..+.-+.+-+.||++.-..+.....
T Consensus 97 ~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 97 KNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE-E-EEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE-E-ecCCCceEEEecCCceEEEEECCCCC
Confidence 34467777 778777653 34578889999999988887533 3333 2 44556788999999999999985333
Q ss_pred cccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEcc---c------cCCCeEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQ--VFAD---M------HKEHINVVKF 601 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~--~l~~---~------h~~~V~sI~f 601 (721)
.... +. .+.+...+++ ..-.+...++.++-.+..|.|+--|+....... .+.- . ..+.-.-+++
T Consensus 170 ~~~~---~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 170 EAQK---ST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp EEEE---EE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred EeEe---ec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 2211 11 1111222222 233444556667768889999998888654322 2210 0 1122334778
Q ss_pred cCCCCcEEEEEE--CC-----C--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcC-CC
Q 004969 602 SNHSPSIFATSS--FD-----Q--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLR-GD 669 (721)
Q Consensus 602 sPdg~~lLaSgs--~D-----g--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~-g~ 669 (721)
++..+++++.-. .+ + .|-+||+.+++......+. ....++..+.+.+ .|++.+ .++.+.+||.. |+
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 776634433321 12 2 2667788887554433332 2233888898765 665554 57899999987 54
Q ss_pred ccc
Q 004969 670 PFR 672 (721)
Q Consensus 670 ~l~ 672 (721)
.++
T Consensus 324 ~~~ 326 (342)
T PF06433_consen 324 LVR 326 (342)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 394
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.96 E-value=2.8 Score=43.84 Aligned_cols=142 Identities=11% Similarity=0.221 Sum_probs=85.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF- 588 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l- 588 (721)
.++.|+.|..+| +.+++...... .........|..+..-+.-+.+++-+ |+.++++++.+-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~----------~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK----------PTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc----------ceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 567899999998 88999833211 22222333488888888878777765 499999999864433310
Q ss_pred ------------ccccCCCeEEEE--EcCCCCcEEEEEECCCcEEEEECCCC--Cc-eeEEEecCCCCeEEEEEecCCCE
Q 004969 589 ------------ADMHKEHINVVK--FSNHSPSIFATSSFDQDVKLWDLRQK--PI-QPCYTASSSKGNVMVCFSPDDHY 651 (721)
Q Consensus 589 ------------~~~h~~~V~sI~--fsPdg~~lLaSgs~DgtIrIWDlrs~--~~-~~~~~~~~~~~~vsl~fSpdg~~ 651 (721)
.-.....+...+ -.+.+...++ ......|.+|..... .. .....+.-...+.+++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCE
Confidence 101223344444 1223323444 444558998887663 22 334445555566688888 666
Q ss_pred EEEEeCCCcEEEEEcC
Q 004969 652 LLGKGSGTSMFVQSLR 667 (721)
Q Consensus 652 Lasgs~Dg~I~VWDl~ 667 (721)
++.|. .....+.|+.
T Consensus 151 i~v~~-~~~f~~idl~ 165 (275)
T PF00780_consen 151 ICVGT-SKGFYLIDLN 165 (275)
T ss_pred EEEEe-CCceEEEecC
Confidence 77776 4446777776
No 395
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.90 E-value=1.7 Score=47.88 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=89.5
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe---CCCe-EEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS---DNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs---~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
..|.-.|+.+|+....+. ....+..+.|+|.++..|.-|- .+.. -|||-+++.......+..... ..
T Consensus 168 ~~i~~idl~tG~~~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~------~e 238 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME------GE 238 (386)
T ss_dssp EEEEEEETTT--EEEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T------TE
T ss_pred ceEEEEECCCCceeEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC------Cc
Confidence 456666788887665554 2467889999988888777653 3443 488988764432222221111 11
Q ss_pred CeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC----------
Q 004969 552 QLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ---------- 616 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg---------- 616 (721)
.+..=-|.++|..+..-+. +..|.-+|+.+++...... ..+.....-+++| .+++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME---MPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE---E-SEEEEEE-TTS-SEEEEEE-------------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe---CCceeeeEEcCCC-CEEEecCCCCCccccccccc
Confidence 2344467788877665432 4467778888876644322 2244556667888 6665433332
Q ss_pred ------cEEEEECCCCCceeEEEe-------cCCCCe--EEEEEecCCCEEEEE-eCCCcEEEEEc
Q 004969 617 ------DVKLWDLRQKPIQPCYTA-------SSSKGN--VMVCFSPDDHYLLGK-GSGTSMFVQSL 666 (721)
Q Consensus 617 ------tIrIWDlrs~~~~~~~~~-------~~~~~~--vsl~fSpdg~~Lasg-s~Dg~I~VWDl 666 (721)
.|+++++..+....+... .++... --..|+|||++++-. ...|...||=+
T Consensus 315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 466788877644332221 111111 157999999987654 45666666543
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.64 E-value=2 Score=50.49 Aligned_cols=188 Identities=13% Similarity=0.158 Sum_probs=104.2
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCC
Q 004969 465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMP 532 (721)
Q Consensus 465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~ 532 (721)
.+.+++.|+.+ ..+..+|..++.....-.. .+...-.+++.. ++...++||.| .++-.||..+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 45667777776 4678889888755443332 233345556654 56788889988 356677777755
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-----NIALYDINSGRRLQV--FADMHKEHINVVKFSNHS 605 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-----~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg 605 (721)
.. ... .+.....-.+++. -.|...++||.|| ++-.||..+.+.-.. +.. .......+.+ +|
T Consensus 361 W~--~~a------~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~--~g 428 (571)
T KOG4441|consen 361 WT--PVA------PMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL--GG 428 (571)
T ss_pred ee--ccC------CccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE--CC
Confidence 31 110 1111111111222 2566677777764 588888887553222 111 1112222223 34
Q ss_pred CcEEEEEECCC------cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969 606 PSIFATSSFDQ------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~Dg------tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~ 669 (721)
.+.++||.++ ++..||..++.+.....+........++. -++...+.||.|+ ++..||...+
T Consensus 429 -~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 429 -KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred -EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 7888888654 57889999887655444333222223332 3567777787776 2566776643
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.56 E-value=0.21 Score=38.17 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN 487 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~ 487 (721)
.|.+++|+| ..+++|.|+.+|.|.++.+ +++
T Consensus 13 ~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 13 RVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence 589999999 8999999999999999998 444
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.43 E-value=12 Score=39.43 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
...+.|.. ++.++-+.+.-| .|+.+|+.+|+......... .----+++.. ++....-.=.++...+||..+-+.
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 55688866 677888877766 88999999999877665422 1222344443 333333444678999999987433
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg~~lL 609 (721)
..++.....=+.++ .++..++.+.....++++|..+-+.+..+.- ..-..++-+.|- +| .+.
T Consensus 123 ----------~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~Iy 188 (264)
T PF05096_consen 123 ----------IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIY 188 (264)
T ss_dssp ----------EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEE
T ss_pred ----------EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEE
Confidence 22232233335555 4778888887788999999988776665542 122345566675 45 566
Q ss_pred EEEECCCcEEEEECCCCCceeEEEec---------CC----CCeE-EEEEecCCCEEEEEe
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTAS---------SS----KGNV-MVCFSPDDHYLLGKG 656 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~---------~~----~~~v-sl~fSpdg~~Lasgs 656 (721)
|-.=....|...|..++.......+. .. .... .++|+|.+..+...|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66656667777788888655443221 11 2233 799999776655544
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.42 E-value=1.5 Score=50.21 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCeEEEEEeeCC---CCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCC--eEEEEEecCCCEEEEEeCCCc
Q 004969 499 NSVLGLCWLKKY---PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ--LTSVHVNSMDELFLASGYSKN 573 (721)
Q Consensus 499 ~~V~sl~fsp~d---~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~--V~sv~~sp~~~~lls~g~Dg~ 573 (721)
..|.++.|.|.. ...+++......|.||.+.........+. ..........-+ -....|||....+++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l-~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLL-MSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccce-eeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 358999998752 22455666778999999863221100000 000111111111 256789999888877665554
Q ss_pred EEEEECCCC-cEE-EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969 574 IALYDINSG-RRL-QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 574 IrlWDl~s~-~~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~ 626 (721)
-.+++++.. ..+ ..+. ..+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 136 SV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 456666643 223 3333 67899999999999665555555555678986543
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=0.95 Score=54.87 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=55.9
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+|++++|+. +|.+++.|-.+|.|.+||+.+++..+.+...+|. ..|..+.|. .++..++++..-|. +|...-
T Consensus 131 ~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t-~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 131 GPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT-SQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred CcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe-CCCcEEEEccCCCc--eEEEEe
Confidence 3699999999 9999999999999999999999998888754442 234444554 45557888877776 676543
No 401
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.34 E-value=5.8 Score=43.13 Aligned_cols=169 Identities=10% Similarity=0.078 Sum_probs=98.0
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeec--CCCCCCeE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPS--FGAMNSVL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~--~~H~~~V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.-.-|..+..+.+-+.||.+.-..+. .|+....... .....++. .=++. ..+..++-.+..|.|+--|+......
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEE
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCccc
Confidence 33345444678888999999988887 5555432211 11122332 22333 44556666789999999998876532
Q ss_pred cccccc----CcceeEeccCCCeEEEEEecCCCEEEEEe---C-----C--CcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969 535 IRGMHY----GAGTVTFDEFDQLTSVHVNSMDELFLASG---Y-----S--KNIALYDINSGRRLQVFADMHKEHINVVK 600 (721)
Q Consensus 535 ~~~~~~----~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~-----D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~ 600 (721)
...... ......+ -++.-.-+++|+..+.+++-- . | ..|.++|+.+++.+..+.. ..++.+|+
T Consensus 219 ~~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~ 295 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIA 295 (342)
T ss_dssp EEEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEE
T ss_pred ccCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEE
Confidence 111000 0000000 012234567777766666542 1 2 3588999999999998873 44677999
Q ss_pred EcCCCCcEEEE-EECCCcEEEEECCCCCceeE
Q 004969 601 FSNHSPSIFAT-SSFDQDVKLWDLRQKPIQPC 631 (721)
Q Consensus 601 fsPdg~~lLaS-gs~DgtIrIWDlrs~~~~~~ 631 (721)
.+.+..-+|++ ...++.+.+||..+++....
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 99877445554 45689999999999965443
No 402
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.08 E-value=0.034 Score=64.51 Aligned_cols=71 Identities=25% Similarity=0.395 Sum_probs=50.1
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
=|.||||.|.|.|--++-.++.||+|.|.|| .++-++--=-..+ +|..|.+-|| --||...+-||.+|..|
T Consensus 189 le~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN----~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN----ALTTLRGIENLKSLYGL 259 (1096)
T ss_pred hhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhh-hheeeeeccc----HHHhhhhHHhhhhhhcc
Confidence 3679999999999999999999999999965 3333321000011 1555555555 44666999999999888
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.99 E-value=2.3 Score=50.04 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred EEEEeCCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-----EEEE
Q 004969 458 QFEYHPSISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-----LKLY 526 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt-----VrIW 526 (721)
+++.. ++.+.++|+.| .++..||..+++....-+... ...-.+++- -++...+.||.||. |-.|
T Consensus 327 ~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 327 GVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeEE--ECCEEEEEeccccccccccEEEe
Confidence 34444 45888899988 467788887776544221111 112223333 36788889998864 6667
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEE--EEccccCCCeEE
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQ--VFADMHKEHINV 598 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~--~l~~~h~~~V~s 598 (721)
|..+.+......-.. . ......+.+ .+...++||.+ .++..||..+++... .+.. .... ..
T Consensus 402 Dp~~~~W~~va~m~~---~----r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~-~g 470 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLT---R----RSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSG-FG 470 (571)
T ss_pred cCCCCcccccCCCCc---c----eeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-cccc-ce
Confidence 777755421110000 0 011122222 56666667643 467899998776432 2221 1111 12
Q ss_pred EEEcCCCCcEEEEEECCCc-----EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCc
Q 004969 599 VKFSNHSPSIFATSSFDQD-----VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS 660 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~Dgt-----IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~ 660 (721)
++.. ++ .+.+.||.|+. |..||..+.+...+...........++ .-++...++|+.||.
T Consensus 471 ~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 471 VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGN 534 (571)
T ss_pred EEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCc
Confidence 3333 34 68888888763 788999998765553333333332222 225666777777763
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.71 E-value=8.5 Score=45.43 Aligned_cols=157 Identities=8% Similarity=0.011 Sum_probs=83.4
Q ss_pred CeEEEEEeCCCCCEEEEEE------CCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-CeEEE
Q 004969 455 RPRQFEYHPSISCLMVFGT------LDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKL 525 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs------~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-GtVrI 525 (721)
.+...+++| +++.++... .|+ .|.+++.. +.. ..+.. +. ..+.-.|+ +++..+.+.+.. ..+++
T Consensus 351 ~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~--~~t~PsWs-pDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GH--SLTRPSWS-LDADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CC--CCCCceEC-CCCCceEEEecCcceEEE
Confidence 477889999 788776655 244 44444542 323 33321 32 36777888 677766666533 22333
Q ss_pred EEcCCCCCc-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE---EECCCCcE-E---EEEccccCCCeE
Q 004969 526 YDIRHMPPS-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL---YDINSGRR-L---QVFADMHKEHIN 597 (721)
Q Consensus 526 WDi~~~~~~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl---WDl~s~~~-v---~~l~~~h~~~V~ 597 (721)
.+-...... .....+.. ... .....|..+.|+|+|..++... ++.|.+ -....|.. + +.+...-...+.
T Consensus 424 ~~~~~~gql~~~~vd~ge-~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 424 IRDPATGQLARTPVDASA-VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred eccCCCceEEEEeccCch-hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 322111110 00111111 111 2235699999999999988776 466766 44344541 1 112221334468
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969 598 VVKFSNHSPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~DgtIrIWDl 623 (721)
.+.|.+++ .+ +++..++...+|.+
T Consensus 501 ~l~W~~~~-~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 501 SLDWRTGD-SL-VVGRSDPEHPVWYV 524 (591)
T ss_pred cceEecCC-EE-EEEecCCCCceEEE
Confidence 89999988 44 45555554445544
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.68 E-value=1.9 Score=48.21 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred EEEEEecCCCEEEEEe-CC----CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC----------CcE
Q 004969 554 TSVHVNSMDELFLASG-YS----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD----------QDV 618 (721)
Q Consensus 554 ~sv~~sp~~~~lls~g-~D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D----------gtI 618 (721)
....++|++.+++.+- .. ..++++|+.+|+.+..... ......+.|.+++..++.+...+ ..|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4677889999888763 22 3599999999987654321 11223499999984455554333 237
Q ss_pred EEEECCCCCce--eEEEecCCCC-eEEEEEecCCCEEEEEeCC----CcEEEEEcCC
Q 004969 619 KLWDLRQKPIQ--PCYTASSSKG-NVMVCFSPDDHYLLGKGSG----TSMFVQSLRG 668 (721)
Q Consensus 619 rIWDlrs~~~~--~~~~~~~~~~-~vsl~fSpdg~~Lasgs~D----g~I~VWDl~g 668 (721)
+.|.+.+.... .++....... .+.+..++|+++++..... ..+++.++..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 88888876544 3454444444 5589999999998865433 3467777764
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.53 E-value=0.32 Score=49.39 Aligned_cols=140 Identities=13% Similarity=0.150 Sum_probs=80.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccc
Q 004969 513 KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADM 591 (721)
Q Consensus 513 ~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~ 591 (721)
.+...+.||+|+-++++..+...+... +.... ..+ -..+..++.|+.+|.|.+|...- +.....+..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~-------~~~e~--~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s- 99 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSER-------FIDEG--QRV--VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS- 99 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhh-------hhhcc--eee--cccCceEEeecccceEEEecCCccchHHHhhhc-
Confidence 355567889999888876443221111 10001 111 12467788899999999998872 111111111
Q ss_pred cCCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC-C-eEEEEEecCCCEEEEE--eCCCcEEEEEc
Q 004969 592 HKEHINV-VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-G-NVMVCFSPDDHYLLGK--GSGTSMFVQSL 666 (721)
Q Consensus 592 h~~~V~s-I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~-~vsl~fSpdg~~Lasg--s~Dg~I~VWDl 666 (721)
-...|.+ |.-..++ .+..+++.||.||.|++.-.+.. -....|. . ......+..+++++.+ |.|..++.|++
T Consensus 100 ~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~--g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVL--GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccceecccccccc-ceeEEeccCCceeeeccccCcee--eeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 1122222 2222333 58899999999999999876432 2222232 2 2245555667777777 77778888887
Q ss_pred C
Q 004969 667 R 667 (721)
Q Consensus 667 ~ 667 (721)
.
T Consensus 177 e 177 (238)
T KOG2444|consen 177 E 177 (238)
T ss_pred h
Confidence 5
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=92.52 E-value=5.6 Score=45.74 Aligned_cols=184 Identities=11% Similarity=0.016 Sum_probs=90.5
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--CeEEEEEcCCCCCcccc
Q 004969 465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 465 dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--GtVrIWDi~~~~~~~~~ 537 (721)
++.++++|+.++ ++..||..++.....-+....... .+++. .++...+.||.+ .++..||..+++. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EE
Confidence 456777787643 567788877654432221111111 22232 356666777754 3577788655322 11
Q ss_pred cccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEccccC-CCeEEEEEcCCCCcEEEEE
Q 004969 538 MHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 538 ~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D---g~IrlWDl~s~~~v~~l~~~h~-~~V~sI~fsPdg~~lLaSg 612 (721)
.. .+.... ....+.. ++...+.||.+ ..+..||.++.+-...-.-... .....+.+ +| .+.+.|
T Consensus 346 ~~------~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G 414 (480)
T PHA02790 346 MP------SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG 414 (480)
T ss_pred CC------CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC
Confidence 10 111111 1122222 55666666654 3577899887654332110011 11122223 34 566666
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRG 668 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g 668 (721)
+ .+.+||..+++...+..+.......+++. -+|+..+.||.+ ..+..||...
T Consensus 415 G---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 415 R---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred C---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 4 57889998876654433322222223332 366777777754 2455666653
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.37 E-value=23 Score=39.97 Aligned_cols=156 Identities=10% Similarity=0.119 Sum_probs=89.1
Q ss_pred eCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecCCCCCCeEEEEEee---CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 462 HPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWLK---KYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 462 sP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~~H~~~V~sl~fsp---~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
++++...|++|+..|.++||+...+. .+-.. .-..+|..|+.-+ ......++.=.-..+.||.+.....
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 34466899999999999999986433 22222 2347888887632 1223333445566788888843221
Q ss_pred cccccccCcceeEeccC--CCeEEEEEecC-----CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 534 SIRGMHYGAGTVTFDEF--DQLTSVHVNSM-----DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~--~~V~sv~~sp~-----~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
....-....-...+.|. .....+++-|- .+.+.+-+.||.+.+|+-+.-...+.+.+ ---...+.|.|..
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~t- 186 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRT- 186 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecC-
Confidence 10000000001122222 22333333232 25677778899999999775444444432 2222346777776
Q ss_pred cEEEEEECCCcEEEEEC
Q 004969 607 SIFATSSFDQDVKLWDL 623 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDl 623 (721)
..|++++.+..+.-|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 68889988888888875
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.36 E-value=0.47 Score=48.21 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=62.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQV 587 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~ 587 (721)
..+..++.|+.+|.|.+|....... +...+... ...| ..+..-.++....+++.||.||.|++.-++.+-.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~-------~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGA-------HSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred ccCceEEeecccceEEEecCCccch-------HHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence 3457899999999999999874221 11111111 1111 2222222344677778899999999987776655
Q ss_pred EccccC-CCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCC
Q 004969 588 FADMHK-EHINVVKFSNHSPSIFATS--SFDQDVKLWDLRQ 625 (721)
Q Consensus 588 l~~~h~-~~V~sI~fsPdg~~lLaSg--s~DgtIrIWDlrs 625 (721)
... |. .++.....+..+ ..++.+ |.|..++.|++..
T Consensus 140 ~g~-h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 140 VGQ-HNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ecc-ccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 543 65 344333333333 455555 6666777777654
No 410
>PLN03150 hypothetical protein; Provisional
Probab=92.32 E-value=0.083 Score=62.65 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=58.0
Q ss_pred Eeecccccccc--cccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 129 VLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 129 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.|+|++|.+.- -..++.+++|++|+|. .|.++..-...|..|++|+.|.+.+|++...- -..+.+|++|+.|.+.
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i--P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI--PESLGQLTSLRILNLN 498 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCCC--chHHhcCCCCCEEECc
Confidence 57788777641 1235678999999999 77887555566899999999999999887321 2457889999999766
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.+
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 54
No 411
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.20 E-value=0.097 Score=66.57 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=64.8
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchh
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
-.+||.+++..+.+ +..-.+.....| +.|+|+.|++.+|- -++.+++|.+|+|.+++.++.++. ++.+|||+.|
T Consensus 588 p~~Lr~L~~~~~~l-~~lP~~f~~~~L--~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPL-RCMPSNFRPENL--VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCC-CCCCCcCCccCC--cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence 35788888877532 111111122223 45888888888773 345678888888887777777764 5667888888
Q ss_pred cccccc-chhhhHHHHHhhcCCcchhhccceee
Q 004969 178 SMCETR-VGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
.|.++. ...+ -..+.+|++|+.|.|..|-
T Consensus 663 ~L~~c~~L~~l---p~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 663 KLSDCSSLVEL---PSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EecCCCCcccc---chhhhccCCCCEEeCCCCC
Confidence 887643 2222 1345667777777777654
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.05 E-value=5.2 Score=47.23 Aligned_cols=169 Identities=12% Similarity=0.002 Sum_probs=88.8
Q ss_pred CCeEEEEEeeCCCCEEEEEe------CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-
Q 004969 499 NSVLGLCWLKKYPSKLIAGS------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS- 571 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D- 571 (721)
..+.+.+.+ ++++.++..- .|+.-.+|-...+... . ... .......-.|+|+++.+.+....
T Consensus 350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~-------~lt--~g~~~t~PsWspDG~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-V-------QVL--EGHSLTRPSWSLDADAVWVVVDGN 418 (591)
T ss_pred cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-e-------eee--cCCCCCCceECCCCCceEEEecCc
Confidence 467788888 5777665554 2444445543322211 1 111 11125666788887766665432
Q ss_pred -----------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE---EECCCCCceeE---EEe
Q 004969 572 -----------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL---WDLRQKPIQPC---YTA 634 (721)
Q Consensus 572 -----------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI---WDlrs~~~~~~---~~~ 634 (721)
+.+.+.++..+.... . ..+.|..+.|+|||. .++.-. ++.|.+ -....+. ..+ ..+
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l 491 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQ-YALTNPREV 491 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCc-eeecccEEe
Confidence 233333444443322 1 356799999999994 444433 466666 4433443 111 112
Q ss_pred -cCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEc--CCCcccc-----cccCeEEEEECCC
Q 004969 635 -SSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSL--RGDPFRD-----FNMSILAAYTRPS 686 (721)
Q Consensus 635 -~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl--~g~~l~~-----~~~~V~~v~fsP~ 686 (721)
..-.. ..++.|.+++..+ ++..++...+|.+ .|..-.. ....+..++-.|.
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred ecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 22223 3478999999865 4554554555554 4443211 2346666776664
No 413
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.02 E-value=0.09 Score=66.86 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=41.4
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
...|++..++++.|-..-.+.+|..|+|. .+.|+.++++ +..+++|+.|++.+++- + +.+..++++++|.+|.+.
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~--l-~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWDG-VHSLTGLRNIDLRGSKN--L-KEIPDLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECc-Cccccccccc-cccCCCCCEEECCCCCC--c-CcCCccccCCcccEEEec
Confidence 34455555555555443345566666666 3446665543 34566666666654421 1 222445566666666665
Q ss_pred eee
Q 004969 207 NWL 209 (721)
Q Consensus 207 ~~~ 209 (721)
.|.
T Consensus 666 ~c~ 668 (1153)
T PLN03210 666 DCS 668 (1153)
T ss_pred CCC
Confidence 543
No 414
>PHA02713 hypothetical protein; Provisional
Probab=92.02 E-value=1.5 Score=51.41 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=79.9
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC------------------
Q 004969 465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG------------------ 521 (721)
Q Consensus 465 dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG------------------ 521 (721)
++.+.+.||.+| +|..||..+.+....-+. .+...-.+++- .++...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-PIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC-CcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 567788888764 478899887654332111 11111112222 3566777777653
Q ss_pred -----eEEEEEcCCCCCcccccccCcceeEeccC-CCeEEEEEecCCCEEEEEeCC------CcEEEEECCC-CcE--EE
Q 004969 522 -----SLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYS------KNIALYDINS-GRR--LQ 586 (721)
Q Consensus 522 -----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s-~~~--v~ 586 (721)
++..||..+.+..... .+... .....+.+ ++...+.||.+ ..+..||..+ .+- +.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~--------~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLP--------NFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccceEEEECCCCCeEeecC--------CCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 4666777664431110 01000 01112222 45556666643 2467899987 443 33
Q ss_pred EEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeE
Q 004969 587 VFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPC 631 (721)
Q Consensus 587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~ 631 (721)
.+.. .......+.+ +| .+.++|+.|| ++..||..+.+...+
T Consensus 498 ~m~~-~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 498 TTES-RLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred ccCc-ccccceeEEE--CC-EEEEEeeecceeehhhcCcccccccch
Confidence 3332 2222333333 44 7999999998 788899988766433
No 415
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.94 E-value=0.064 Score=60.30 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=42.3
Q ss_pred eEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
+.|+|..|.|++++. .+.+.+|.+|+|. .|.|++| ...+++++|..|.+-+|.|+.+ ..+.-|++|..|.+.
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~----~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKL--EGLSTLTLLKELNLSGNLISDI----SGLESLKSLKLLDLS 170 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheecc-ccccccc--cchhhccchhhheeccCcchhc----cCCccchhhhcccCC
Confidence 346666666666666 6666666666666 5666666 5555666666666666665543 444445555544433
No 416
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.70 E-value=14 Score=43.08 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=25.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969 561 MDELFLASGYSKNIALYDINSGRRLQVFAD 590 (721)
Q Consensus 561 ~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~ 590 (721)
.+..+++++.+|.++.+|.++|+.+..+.-
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 456777777799999999999999998873
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.57 E-value=7.7 Score=40.98 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=69.9
Q ss_pred eEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcE
Q 004969 501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNI 574 (721)
Q Consensus 501 V~sl~fsp~d~~~LaSgs~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~I 574 (721)
...|+|+|..+.-++-+-.-|+ ..++|..+.+..+.... ......+.| =.||++|.+++++-.| |.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeecc------cccCCCCcEEEeecCCCCCCCceE
Confidence 3457777767777777766665 56789888766332221 222222322 2578999999887543 789
Q ss_pred EEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 575 ALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 575 rlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
-+||.+.+ +.+-++.. |.-....+.|.+|| +.++.+.
T Consensus 143 GvYd~r~~fqrvgE~~t-~GiGpHev~lm~DG-rtlvvan 180 (366)
T COG3490 143 GVYDAREGFQRVGEFST-HGIGPHEVTLMADG-RTLVVAN 180 (366)
T ss_pred EEEecccccceeccccc-CCcCcceeEEecCC-cEEEEeC
Confidence 99999854 45566665 88788889999999 6666554
No 418
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=91.14 E-value=0.15 Score=61.50 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHh-cccceEeeccCCchhhHHHH-HhhcCCccceEeecccccccccccccccceeeEEeccccccccccc
Q 004969 91 ALSLMHAI-DQKLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFK 164 (721)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (721)
|++-|+.- .-+-.++||.++.+.. +- .+.. ..+.|+|+.|+|.+|.. ..+.|.+|+|. +|.|++++
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~Lts--LP~~l~~---~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs-~N~LtsLP 258 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTT--LPDCLPA---HITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLP 258 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCc--CCcchhc---CCCEEEccCCcCCCCCC--CCCCCcEEEec-CCccCccc
Confidence 45555433 3345566666654431 11 1111 23456666666665543 23556666665 45555554
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=2.5 Score=51.68 Aligned_cols=135 Identities=9% Similarity=0.007 Sum_probs=87.0
Q ss_pred CCeEEEEEecCCCEEEEE--eCCCcEEEEECCCCcEE-----EEEcc-----ccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969 551 DQLTSVHVNSMDELFLAS--GYSKNIALYDINSGRRL-----QVFAD-----MHKEHINVVKFSNHSPSIFATSSFDQDV 618 (721)
Q Consensus 551 ~~V~sv~~sp~~~~lls~--g~Dg~IrlWDl~s~~~v-----~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~DgtI 618 (721)
-++..+...++....++. +.+-.|..||+++-..- .-+.. .......++.|+|.-+...++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 344555555664443333 34446999999853211 11111 0234556789999877778889999999
Q ss_pred EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--------cccccccCeEEEEECCCC
Q 004969 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD--------PFRDFNMSILAAYTRPSS 687 (721)
Q Consensus 619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~--------~l~~~~~~V~~v~fsP~~ 687 (721)
++..+..... .+..++.....++++|+|.|..++.|-..|++.-|.-... +... ...|.++.|--..
T Consensus 181 ~V~~~~~~~~-~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQ-NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhh-hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecce
Confidence 9988765322 1233444444558999999999999999999988865432 1222 4678889987665
No 420
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.62 E-value=0.11 Score=62.04 Aligned_cols=91 Identities=22% Similarity=0.381 Sum_probs=56.2
Q ss_pred eEeeccCCchhhHHHHHhhcCCccceEeeccccc------ccccccccccceeeEEeccccccccccc-ccccccccccc
Q 004969 103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR------FRKLNMIGEFKRIHTLNLDYSTSLTSFK-EDCFSCMPNLI 175 (721)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 175 (721)
..||..+ +.++.+.+=+++-|.+ ||+++++ ++|.+. .||.|.+|.+. +..+..-+ ..-+...|||.
T Consensus 104 ~~idi~~--lL~~~Ln~~sr~nL~~--LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~ 176 (699)
T KOG3665|consen 104 ATIDIIS--LLKDLLNEESRQNLQH--LDISGSELFSNGWPKKIGT--MLPSLRSLVIS-GRQFDNDDFSQLCASFPNLR 176 (699)
T ss_pred hhccHHH--HHHHHHhHHHHHhhhh--cCccccchhhccHHHHHhh--hCcccceEEec-CceecchhHHHHhhccCccc
Confidence 3455444 5566666656666655 6666432 223322 46666666665 33333222 13446788888
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
.|...+|+|.|| ..+|.|.+|..|-
T Consensus 177 sLDIS~TnI~nl----~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 177 SLDISGTNISNL----SGISRLKNLQVLS 201 (699)
T ss_pred eeecCCCCccCc----HHHhccccHHHHh
Confidence 888888888888 7888888888884
No 421
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=90.50 E-value=0.15 Score=33.71 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCccccccCCCC
Q 004969 336 KHYRDYMIASLPKLKFLDNLP 356 (721)
Q Consensus 336 ~~yRe~~I~~Lp~Lk~Ldn~~ 356 (721)
++||++++..||+|+.||...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 479999999999999999754
No 422
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=0.037 Score=58.18 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=69.5
Q ss_pred cceEeeccCCchhhHHHHHhhcCCccceEeeccccc--c----cccccccccceeeEEecccccccccccc-cccccccc
Q 004969 101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR--F----RKLNMIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPN 173 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 173 (721)
|+...|+.||++-.=-+.+=+..-.+-+++.|..++ + .+-++.-.|+++..+-+. .+.|...+. -=|.-.|-
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~-e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC-EGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-cCcccchhhcccCCCCCc
Confidence 666677777654322222222222333444444222 1 233444579999999888 777766654 56888888
Q ss_pred cchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 174 LICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+-+|.+..|+|. =|..+-||-+.|+|+-||.
T Consensus 226 ~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 226 LSCLNLGANNID-SWASVDALNGFPQLVDLRV 256 (418)
T ss_pred chhhhhcccccc-cHHHHHHHcCCchhheeec
Confidence 899999999998 7999999999999999984
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.11 E-value=32 Score=37.47 Aligned_cols=233 Identities=15% Similarity=0.199 Sum_probs=115.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE---EEEeec--CCCCCCeEEEEEeeC--CCCEEEEEeC-C------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPS--FGAMNSVLGLCWLKK--YPSKLIAGSD-N------ 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~---i~~l~~--~~H~~~V~sl~fsp~--d~~~LaSgs~-D------ 520 (721)
.+++|+|.| ++.++++ ...|.|++++ ..+.. +..+.. ........+++++|. ...+|..... .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 489999999 7777664 6699999999 44544 222211 133467899999852 2334433332 1
Q ss_pred --CeEEEEEcCCCCCcccccccCcceeEe-c----cCCCeEEEEEecCCCEEEEEeCCCc-------------EEEEECC
Q 004969 521 --GSLKLYDIRHMPPSIRGMHYGAGTVTF-D----EFDQLTSVHVNSMDELFLASGYSKN-------------IALYDIN 580 (721)
Q Consensus 521 --GtVrIWDi~~~~~~~~~~~~~~~~~~~-~----~~~~V~sv~~sp~~~~lls~g~Dg~-------------IrlWDl~ 580 (721)
..|.-|........... ....+.. . ....-..+.|.|++...++.|..+. |.-.+..
T Consensus 80 ~~~~v~r~~~~~~~~~~~~---~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSS---EEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEEETTSCEEEE---EEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred cceeeEEEeccCCcccccc---ceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 23444444443111110 0001100 1 1123567999999977777664322 2222221
Q ss_pred CCcE-------------EEEEccccCCCeEEEEEcCC-CCcEEEEE-ECCCcEEEEECCCCC------------------
Q 004969 581 SGRR-------------LQVFADMHKEHINVVKFSNH-SPSIFATS-SFDQDVKLWDLRQKP------------------ 627 (721)
Q Consensus 581 s~~~-------------v~~l~~~h~~~V~sI~fsPd-g~~lLaSg-s~DgtIrIWDlrs~~------------------ 627 (721)
++. ...+..++. ....++|+|. | .++++= +.|+.=.|--+..+.
T Consensus 157 -G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 157 -GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp -SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred -CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 110 001111122 2457899998 5 555442 333333333222211
Q ss_pred ---------ceeEEEecCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEEcC-CCc-------ccccccCeEEEEE
Q 004969 628 ---------IQPCYTASSSKGNVMVCFSP-------DDHYLLGKGSGTSMFVQSLR-GDP-------FRDFNMSILAAYT 683 (721)
Q Consensus 628 ---------~~~~~~~~~~~~~vsl~fSp-------dg~~Lasgs~Dg~I~VWDl~-g~~-------l~~~~~~V~~v~f 683 (721)
..+.+.+..|..+..+.|-. .|.++++.-..+.|....+. +.. +..+...+..+++
T Consensus 234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 12445566666666666653 45677766666677766665 222 2233447899999
Q ss_pred CCCCCcccccccEEEEecCC
Q 004969 684 RPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 684 sP~~~~~~v~v~lLASgs~~ 703 (721)
.|++ .+.++-+..
T Consensus 314 ~pDG-------~Lyv~~d~~ 326 (331)
T PF07995_consen 314 GPDG-------ALYVSDDSD 326 (331)
T ss_dssp ETTS-------EEEEEE-TT
T ss_pred cCCC-------eEEEEECCC
Confidence 9999 888876643
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.10 E-value=34 Score=37.76 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=79.7
Q ss_pred CeEEEEEeCCCCCEEEEEE-----------CCC-eEEEEECCC--CeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPSISCLMVFGT-----------LDG-EIVVVNHEN--ENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-----------~DG-~I~IWdl~t--g~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs 518 (721)
.++.|+|.+ +|+++++-. ..+ .|.+++-.+ |.. ...+. .......++++. +++ |+.++
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l~~p~Gi~~~-~~G--lyV~~ 88 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EELSMVTGLAVA-VGG--VYVAT 88 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCCCCccceeEe-cCC--EEEeC
Confidence 488999999 888877643 223 787776543 332 22332 223456788886 455 44445
Q ss_pred CCCeEEEEEcCCCCCcc---ccc-ccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------------------CcEE
Q 004969 519 DNGSLKLYDIRHMPPSI---RGM-HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------------------KNIA 575 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~---~~~-~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------------------g~Ir 575 (721)
.....++.|.......- ..+ .+... ....+......+.|.|++...++.+.. |.|.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 55444454654321100 000 00000 000012336788898888776665521 3455
Q ss_pred EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
-+|...++. ..+.. .-.....++|+|+| .++++-..
T Consensus 168 r~~pdg~~~-e~~a~-G~rnp~Gl~~d~~G-~l~~tdn~ 203 (367)
T TIGR02604 168 RYNPDGGKL-RVVAH-GFQNPYGHSVDSWG-DVFFCDND 203 (367)
T ss_pred EEecCCCeE-EEEec-CcCCCccceECCCC-CEEEEccC
Confidence 566654443 33332 22345689999998 67766443
No 425
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.09 E-value=0.17 Score=54.33 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=61.5
Q ss_pred cceEeeccCCchhhHHHHHh---hcCCccceEeeccccccc---------------ccccccccceeeEEeccccccccc
Q 004969 101 KLRVVDLHDSSFGKDFIRNL---SQRGLMCEVLNLRSSRFR---------------KLNMIGEFKRIHTLNLDYSTSLTS 162 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~ 162 (721)
||+++||.||-||-+++|.| -..-.+=|-|.|.++-+- +.+-+|.=++|++++.. .|++..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-RNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-cccccc
Confidence 99999999999999988843 222222233444333221 23333333444444433 333322
Q ss_pred cc--------------------------------ccccccccccchhccccccchhhhH--HHHHhhcCCcchhhcccee
Q 004969 163 FK--------------------------------EDCFSCMPNLICLSMCETRVGNLWT--TIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 163 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 208 (721)
.+ .--|.-+|+|+.|.|-+|--.-.=. -.-||+-+|.|+||+|..|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 11 1235566888888888764331100 0236788899999999888
Q ss_pred ee
Q 004969 209 LC 210 (721)
Q Consensus 209 ~~ 210 (721)
+=
T Consensus 252 ll 253 (382)
T KOG1909|consen 252 LL 253 (382)
T ss_pred cc
Confidence 74
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.82 E-value=32 Score=36.98 Aligned_cols=203 Identities=11% Similarity=0.124 Sum_probs=109.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECC------CC-eEEEEeecCC---CCCCeEEEEEeeCC-----------CCEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE------NE-NIVSYIPSFG---AMNSVLGLCWLKKY-----------PSKL 514 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~------tg-~~i~~l~~~~---H~~~V~sl~fsp~d-----------~~~L 514 (721)
.+.|+++| .+.+-++....+...+||.. .. ..+-+++... .....+.+.|+... ...+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 78899999 77888888888999999986 12 2333443211 23567888887211 1236
Q ss_pred EEEeCCCeEEEEEcCCCCCcccccccCcceeEeccC--CCe-EEEEEe--cCCCEEEEEe-CCCcEEEEECCCCcEEEEE
Q 004969 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF--DQL-TSVHVN--SMDELFLASG-YSKNIALYDINSGRRLQVF 588 (721)
Q Consensus 515 aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~--~~V-~sv~~s--p~~~~lls~g-~Dg~IrlWDl~s~~~v~~l 588 (721)
+.+++||+|.-|.-.-...... ...+.+... ..| ..+++. ..++.++++. ..++|.+||-.-.+.. +
T Consensus 104 if~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~ 176 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--L 176 (336)
T ss_pred EEEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--C
Confidence 7789999999998543222000 011111111 112 234443 3356676665 4789999986533221 1
Q ss_pred ccccCCC-------------------eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec--
Q 004969 589 ADMHKEH-------------------INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-- 647 (721)
Q Consensus 589 ~~~h~~~-------------------V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp-- 647 (721)
.+....+ |+-..-.+++ +-=+.|..-|.|-+||+...-.+....-..-..+..++..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh
Confidence 1111111 1111112222 12223334578999998864322221111112233455543
Q ss_pred ----CCCEEEEEeCCCcEEEEEcC
Q 004969 648 ----DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 648 ----dg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|..|+.--.||+|..||..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCC
Confidence 56778776779999999975
No 427
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.78 E-value=5.3 Score=42.13 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC-
Q 004969 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG- 658 (721)
Q Consensus 582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D- 658 (721)
|+.+.... -......|+|+|..+.-++.+-.-|+ ..++|........+..-....... --.|||||++|++.-.|
T Consensus 58 Gk~v~~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 58 GKIVFATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred Cceeeeee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 55554443 33455678899988777888887777 568998876432222211111112 35799999999987543
Q ss_pred ----CcEEEEEcCCC-----cccccccCeEEEEECCCCCcccccccEEEEecC
Q 004969 659 ----TSMFVQSLRGD-----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 659 ----g~I~VWDl~g~-----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
|.|=|||.+.+ .+.+|......+.|.+++ ..++.+.+
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-------rtlvvanG 181 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-------RTLVVANG 181 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCC-------cEEEEeCC
Confidence 57889998722 355666677888999999 66666555
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.27 E-value=0.84 Score=34.88 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 004969 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL 585 (721)
Q Consensus 551 ~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v 585 (721)
..|..++|+|..+.++.+..+|.|.+|.+ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 45899999999999999999999999998 55543
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.26 E-value=14 Score=41.46 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCCEEEEEE--------------------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC--E
Q 004969 456 PRQFEYHPSISCLMVFGT--------------------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS--K 513 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs--------------------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~--~ 513 (721)
-+.+-|.| ..+.++|.. ...++.+||+.+.+.++++..-........|.|. .++. +
T Consensus 183 gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~ 260 (461)
T PF05694_consen 183 GYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANY 260 (461)
T ss_dssp ---EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--E
T ss_pred CCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccc
Confidence 45577777 666666654 3578999999999999999873333457788886 3332 2
Q ss_pred -EEEEeCCCeEEEE-EcCCCCCcccccccCcceeEec----------c--------CCCeEEEEEecCCCEEEEEeC-CC
Q 004969 514 -LIAGSDNGSLKLY-DIRHMPPSIRGMHYGAGTVTFD----------E--------FDQLTSVHVNSMDELFLASGY-SK 572 (721)
Q Consensus 514 -LaSgs~DGtVrIW-Di~~~~~~~~~~~~~~~~~~~~----------~--------~~~V~sv~~sp~~~~lls~g~-Dg 572 (721)
++.+...++|-.| ..+.+.-. ...++... . ..-|+.+.++.++.++..+.. +|
T Consensus 261 gFvg~aLss~i~~~~k~~~g~W~------a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G 334 (461)
T PF05694_consen 261 GFVGCALSSSIWRFYKDDDGEWA------AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG 334 (461)
T ss_dssp EEEEEE--EEEEEEEE-ETTEEE------EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT
T ss_pred eEEEEeccceEEEEEEcCCCCee------eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC
Confidence 3333344444333 32332211 01111111 0 133789999999999998885 89
Q ss_pred cEEEEECCCC
Q 004969 573 NIALYDINSG 582 (721)
Q Consensus 573 ~IrlWDl~s~ 582 (721)
.||-||+...
T Consensus 335 dvrqYDISDP 344 (461)
T PF05694_consen 335 DVRQYDISDP 344 (461)
T ss_dssp EEEEEE-SST
T ss_pred cEEEEecCCC
Confidence 9999999863
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.02 E-value=11 Score=44.66 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=63.6
Q ss_pred CEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEc--CCCCcEEEEEECCCcEEEEECC-----C--CCceeE-
Q 004969 563 ELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIFATSSFDQDVKLWDLR-----Q--KPIQPC- 631 (721)
Q Consensus 563 ~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs--Pdg~~lLaSgs~DgtIrIWDlr-----s--~~~~~~- 631 (721)
+.++.... ...+.|||.+.+.....-.-...+.|..+.|. |+| ..+++-|..+.|.+|--. . ....++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 44555554 45699999998875443321257889999886 677 567777778888888542 1 111122
Q ss_pred -EEecCCC-CeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 632 -YTASSSK-GNV-MVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 632 -~~~~~~~-~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
..+..++ .++ ...|.++|..++++ ++.++|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 2222222 334 78999999887754 467888764
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.95 E-value=5.3 Score=47.56 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=71.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccc----------ccCcceeEeccCCCeEEEEEe--cCCCEEEEEeCCCcEEEE
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGM----------HYGAGTVTFDEFDQLTSVHVN--SMDELFLASGYSKNIALY 577 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~----------~~~~~~~~~~~~~~V~sv~~s--p~~~~lls~g~Dg~IrlW 577 (721)
+.+.|+.|.+||.|.+|.+++-...+... ........+.....+++++++ .....||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45689999999999999775311000000 001122344445678999998 667777777777777777
Q ss_pred ECCCC--cEEEEEccccCCCeEEEEEcCCC--Cc---EEEEEECCCcEEEEEC
Q 004969 578 DINSG--RRLQVFADMHKEHINVVKFSNHS--PS---IFATSSFDQDVKLWDL 623 (721)
Q Consensus 578 Dl~s~--~~v~~l~~~h~~~V~sI~fsPdg--~~---lLaSgs~DgtIrIWDl 623 (721)
-.... +....-...|..-|.+|+|-++. +. .+++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55431 11111011256678899998764 22 7778888999888887
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.82 E-value=13 Score=38.35 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=64.1
Q ss_pred eEEEEEeeCCCCEEEEEeCCCeEEEEE--cCCCCCcccc-cccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969 501 VLGLCWLKKYPSKLIAGSDNGSLKLYD--IRHMPPSIRG-MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (721)
Q Consensus 501 V~sl~fsp~d~~~LaSgs~DGtVrIWD--i~~~~~~~~~-~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW 577 (721)
-++++|......+.+.-+.+-+|.-|| ..++...-.. +..-.....+.+.. --.+++...|..++++-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCCcEEEEEecCcEEEEE
Confidence 357889744444556677888898888 5554431100 00000001111111 1234445577778887788999999
Q ss_pred ECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 578 DINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 578 Dl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
|..+|+.+.++.- ....|++.+|--.
T Consensus 239 dp~tGK~L~eikl-Pt~qitsccFgGk 264 (310)
T KOG4499|consen 239 DPTTGKILLEIKL-PTPQITSCCFGGK 264 (310)
T ss_pred CCCCCcEEEEEEc-CCCceEEEEecCC
Confidence 9999999999986 6889999999643
No 433
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.71 E-value=18 Score=37.77 Aligned_cols=131 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred CeEEEEEecCCCEEEEEe--C-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE-CCCCC
Q 004969 552 QLTSVHVNSMDELFLASG--Y-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD-LRQKP 627 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g--~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD-lrs~~ 627 (721)
.+.+.++++++..+++.. . ...++++. .+....... ....+..-.|++++ .+.+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 468889999999887776 2 23455554 333333332 22377888999998 6777766677777774 33333
Q ss_pred ceeEE-EecCCC-CeEEEEEecCCCEEEEEe---CCCcEEEEEcC----CCc------cc---ccccCeEEEEECCCC
Q 004969 628 IQPCY-TASSSK-GNVMVCFSPDDHYLLGKG---SGTSMFVQSLR----GDP------FR---DFNMSILAAYTRPSS 687 (721)
Q Consensus 628 ~~~~~-~~~~~~-~~vsl~fSpdg~~Lasgs---~Dg~I~VWDl~----g~~------l~---~~~~~V~~v~fsP~~ 687 (721)
..+.. ...... .+..+.+||||..++... .++.|+|=-+. |.+ .. .....+..+.|.+++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 22221 122222 344899999999887655 35677766543 311 11 113478899999998
No 434
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.56 E-value=0.2 Score=47.30 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEeccccccc
Q 004969 82 TSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSL 160 (721)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 160 (721)
|+|-|---|-+--|-.-|+-|..++|+||.| |+|=..+.+.=..-..|||.+|.|+.+-- +.-.+-|..|||. .|++
T Consensus 35 ssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~-~N~l 112 (177)
T KOG4579|consen 35 SSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR-FNPL 112 (177)
T ss_pred ccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc-cCcc
Confidence 6787664443334456689999999999988 66777777776677889999999987621 3467889999999 7899
Q ss_pred ccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 161 TSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
..+.+-.|. +-||..|..-+|.++.+=++ +--|-+|.|..|+
T Consensus 113 ~~~p~vi~~-L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lg 154 (177)
T KOG4579|consen 113 NAEPRVIAP-LIKLDMLDSPENARAEIDVD-LFYSSLPALIKLG 154 (177)
T ss_pred ccchHHHHH-HHhHHHhcCCCCccccCcHH-HhccccHHHHHhc
Confidence 999998888 99999999999999988666 5567777787774
No 435
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.55 E-value=50 Score=40.55 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=100.8
Q ss_pred cCeEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969 454 FRPRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV 523 (721)
..+.+..|..+.+.++++|+ ..|.|.|+....+..+..+....-.+.+.++.- .++.++|+ -...|
T Consensus 775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~v 850 (1096)
T KOG1897|consen 775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSV 850 (1096)
T ss_pred eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEE
Confidence 34666778884478888887 358899998887555554443334577777764 35555544 44689
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE--ECCCCcEEEEEccccCCCeEEEEE
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY--DINSGRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW--Dl~s~~~v~~l~~~h~~~V~sI~f 601 (721)
++|+..+++.. .....+..++..+...-.++.+++|.-=+++.+- +...|.....-+.-+..+.+++.+
T Consensus 851 rLye~t~~~eL---------r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 851 RLYEWTTEREL---------RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred EEEEcccccee---------hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence 99999886431 1122234566777777789999998866665554 444444444433347888999998
Q ss_pred cCCCCcEEEEEECCCcEEEEECC
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlr 624 (721)
-.+. .++.+..+|.+.+-...
T Consensus 922 l~~d--~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 922 LDDD--TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred ecCc--eEEeecccccEEEEEec
Confidence 8665 55566667776665443
No 436
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=88.53 E-value=0.1 Score=62.26 Aligned_cols=97 Identities=30% Similarity=0.459 Sum_probs=72.0
Q ss_pred ccceEeeccCC---chhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDS---SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (721)
Q Consensus 100 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (721)
.+|||+||.-| +|---++++|.+ =+.|+|++|++..|-- +-...+||||... +|.|.+|+ =+...|.|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~----LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah-sN~l~~fP--e~~~l~qL~ 455 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEE----LEELNLSGNKLTTLPDTVANLGRLHTLRAH-SNQLLSFP--ELAQLPQLK 455 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHH----hHHHhcccchhhhhhHHHHhhhhhHHHhhc-CCceeech--hhhhcCcce
Confidence 37888888876 455667777665 3668888888888763 2377889999988 99999998 478888999
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+|.+.-|++.+. |--+|+-+ |.|++|.|
T Consensus 456 ~lDlS~N~L~~~-~l~~~~p~-p~LkyLdl 483 (1081)
T KOG0618|consen 456 VLDLSCNNLSEV-TLPEALPS-PNLKYLDL 483 (1081)
T ss_pred EEecccchhhhh-hhhhhCCC-cccceeec
Confidence 999998888876 33333333 67888854
No 437
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.05 E-value=48 Score=36.85 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=107.7
Q ss_pred EEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe---eCCCCE--EEEEe-CC---CeEEEEE
Q 004969 459 FEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---KKYPSK--LIAGS-DN---GSLKLYD 527 (721)
Q Consensus 459 lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs---p~d~~~--LaSgs-~D---GtVrIWD 527 (721)
|-.+|. ...+++....++-+.+||+. |+.+..+.. + ..+.|..- +-.+.. |+.++ .+ .+|++|.
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV-G---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S-S----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC-C---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 445543 45678888888999999998 667776652 3 33333321 122332 44444 32 4799998
Q ss_pred cCCCCCcccccccCcceeEeccCCCeEEEEEe--cC-CC-EEEEEeCCCcEEEEECC---CC----cEEEEEccccCCCe
Q 004969 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN--SM-DE-LFLASGYSKNIALYDIN---SG----RRLQVFADMHKEHI 596 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s--p~-~~-~lls~g~Dg~IrlWDl~---s~----~~v~~l~~~h~~~V 596 (721)
+......+.........+ ......++.+++- +. +. +.++.+.+|.+.-|-+. .+ +.++.|. -...+
T Consensus 134 id~~~g~L~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~ 210 (381)
T PF02333_consen 134 IDPDTGELTDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQP 210 (381)
T ss_dssp EETTTTEEEE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-E
T ss_pred ecCCCCcceEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcc
Confidence 875333233222211111 1222456777774 32 33 45556678887777664 33 4678887 45578
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCCCC---ceeEEEecC--CCCeE-EEE--EecCC-CEEEEEe-CCCcEEEEEc
Q 004969 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKP---IQPCYTASS--SKGNV-MVC--FSPDD-HYLLGKG-SGTSMFVQSL 666 (721)
Q Consensus 597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~---~~~~~~~~~--~~~~v-sl~--fSpdg-~~Lasgs-~Dg~I~VWDl 666 (721)
..+...... ..|..|-.+.-|.-|+..-.. ...+....+ -...+ .++ ..++| .||++++ .+++..||+.
T Consensus 211 EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 211 EGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred eEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 888888776 588889888878778776321 122222222 12223 333 34454 3666555 4668999998
Q ss_pred CC
Q 004969 667 RG 668 (721)
Q Consensus 667 ~g 668 (721)
++
T Consensus 290 ~~ 291 (381)
T PF02333_consen 290 EG 291 (381)
T ss_dssp ST
T ss_pred CC
Confidence 85
No 438
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.82 E-value=50 Score=36.74 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=82.8
Q ss_pred EEeCCCCCEEEEEEC-C--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 460 EYHPSISCLMVFGTL-D--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 460 afsP~dg~~LasGs~-D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
.|.+ +|+.|+.++. | ..+.+.|+.+++..+.....+ ....+..++ ++.+.++-......|+-.|+.+.+..
T Consensus 42 ~ft~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~-- 115 (386)
T PF14583_consen 42 CFTD-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEER-- 115 (386)
T ss_dssp -B-T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--EE--
T ss_pred CcCC-CCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEe-cCCCeEEEEECCCeEEEEECCcCcEE--
Confidence 4666 6766555554 4 467777899888776554322 222234445 45566655555568888899885531
Q ss_pred ccccCcceeEecc-CCCeEEEEE--ecCCCEEEEEe-----------------------CCCcEEEEECCCCcEEEEEcc
Q 004969 537 GMHYGAGTVTFDE-FDQLTSVHV--NSMDELFLASG-----------------------YSKNIALYDINSGRRLQVFAD 590 (721)
Q Consensus 537 ~~~~~~~~~~~~~-~~~V~sv~~--sp~~~~lls~g-----------------------~Dg~IrlWDl~s~~~v~~l~~ 590 (721)
..+.- ...+....| +.++.. +++. -...|.-.|+.+|+....+.
T Consensus 116 --------~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~- 185 (386)
T PF14583_consen 116 --------VVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE- 185 (386)
T ss_dssp --------EEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred --------EEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence 11111 111222223 222222 2221 12346667888888766666
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEEC---CCc-EEEEECCC--CCceeEEEecCCCCeE-EEEEecCCCEEEE
Q 004969 591 MHKEHINVVKFSNHSPSIFATSSF---DQD-VKLWDLRQ--KPIQPCYTASSSKGNV-MVCFSPDDHYLLG 654 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg~~lLaSgs~---Dgt-IrIWDlrs--~~~~~~~~~~~~~~~v-sl~fSpdg~~Las 654 (721)
-...+..+.|+|..+.+++-|-. |.. -|||-+++ ....++.... ....+ -=-|.|||..|.-
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence 56788999999999777776654 232 36776654 2222232211 11222 3568899986653
No 439
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=87.72 E-value=0.13 Score=58.79 Aligned_cols=54 Identities=31% Similarity=0.483 Sum_probs=48.5
Q ss_pred Eeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969 129 VLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV 184 (721)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (721)
-|||++|.|.+|+| .|+.-+|+||||+ -|-+|.++ +|---+|+|++|...+|..
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlS-rNQLt~LP-~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLS-RNQLTVLP-DAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccc-cchhccch-HHHhhhHHHHHHHhccCcc
Confidence 48999999999999 4699999999999 89999996 6778899999999999864
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=4.3 Score=49.82 Aligned_cols=138 Identities=8% Similarity=0.043 Sum_probs=82.2
Q ss_pred EEEEeCCCeEEEEEcCCCCCccc--ccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc-EEEEEc
Q 004969 514 LIAGSDNGSLKLYDIRHMPPSIR--GMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR-RLQVFA 589 (721)
Q Consensus 514 LaSgs~DGtVrIWDi~~~~~~~~--~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~-~v~~l~ 589 (721)
++..+.+-.|..||+++-..... ...-......+.......++.|+|.-.. .++...|+.|++.-+.... .+..+.
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p 196 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP 196 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC
Confidence 33444556899999986432110 0000011122223334677888887544 4445578999988776432 233333
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEE
Q 004969 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Las 654 (721)
....+++++|+|.| ..++.|-..|++.-|-..-.....+...+ ....+.+++|-....++++
T Consensus 197 --~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 197 --VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 56788999999999 79999999999988876543111111111 1122338999887777775
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.63 E-value=35 Score=38.53 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=89.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec----CCCEEEEEeCCCcEEEEECCC--C
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS----MDELFLASGYSKNIALYDINS--G 582 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~Dg~IrlWDl~s--~ 582 (721)
.+.+.+++||..|.++||+...+.... ..-....+-..+|..+..-. .....++.=.-..+.+|.+.. |
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~-----~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP-----EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC-----ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 345799999999999999996533210 11123334445666665522 233344445567788887732 1
Q ss_pred c-------EEEEEcccc--CCCeEEEEEcCCC----CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969 583 R-------RLQVFADMH--KEHINVVKFSNHS----PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 583 ~-------~v~~l~~~h--~~~V~sI~fsPdg----~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg 649 (721)
. .+..... | ......++.-|-| ...+.+-+.||.+.+|+-+.-.. ...++..--+-.++|.+..
T Consensus 110 ~~~~g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp~~llPgPl~Y~~~t 186 (418)
T PF14727_consen 110 TVEHGNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLPDFLLPGPLCYCPRT 186 (418)
T ss_pred CcccCcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcCCCCCCcCeEEeecC
Confidence 1 1111111 3 2344455555544 36788899999999999876421 2233332222257888888
Q ss_pred CEEEEEeCCCcEEEEEc
Q 004969 650 HYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl 666 (721)
+.+++++.+..+.-|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 88888888877777764
No 442
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=87.59 E-value=0.31 Score=59.89 Aligned_cols=101 Identities=25% Similarity=0.301 Sum_probs=73.4
Q ss_pred ccceEeeccCCchhhH---HHHHhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (721)
.+|||.||+.+.=|.. ++.+|.+=. -|||+.+.++.| .-+++|+.|.+|||+|...+.++ .+...-|++|+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~Lr----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr 645 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLR----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR 645 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhh----cccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc
Confidence 5799999994443333 466666543 589999988865 23579999999999988888887 77888899999
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+|.+-...+.+==-.+.-|-+|..|+.|.+
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhhee
Confidence 999887774432233455677777777743
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.12 E-value=22 Score=39.31 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=55.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----cE--E-EEEccc---cCCCeEEEEEcCCCCcEEEEEECC-----
Q 004969 552 QLTSVHVNSMDELFLASGYSKNIALYDINSG-----RR--L-QVFADM---HKEHINVVKFSNHSPSIFATSSFD----- 615 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-----~~--v-~~l~~~---h~~~V~sI~fsPdg~~lLaSgs~D----- 615 (721)
....+++.+++ ++++......++.|.... +. + ..+... +......++|.|+| .+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCcee
Confidence 35778887766 555554443444455321 21 1 122221 13447789999999 555543311
Q ss_pred --------------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969 616 --------------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 616 --------------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs 656 (721)
|.|.-+|..++... ....+...+..++|+|+|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e--~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLR--VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEE--EEecCcCCCccceECCCCCEEEEcc
Confidence 34555566554332 2234555566899999999887644
No 444
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.10 E-value=18 Score=39.04 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=88.3
Q ss_pred CeEEEEEeCCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCe
Q 004969 455 RPRQFEYHPSISCLMVFGTL-----------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-----------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGt 522 (721)
+...+...| +|.+.++... -|.|+.++. .+..++.+. .+-..-++|+|+ ++++.|+.+- ..+.
T Consensus 112 r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~S-pDg~tly~aDT~~~~ 186 (307)
T COG3386 112 RPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFS-PDGKTLYVADTPANR 186 (307)
T ss_pred CCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEEC-CCCCEEEEEeCCCCe
Confidence 466677788 6776655333 143444443 455555554 444556789999 5666655554 4578
Q ss_pred EEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVK 600 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~ 600 (721)
|.-|++....... .+....+.+. ..+..-.++...+|...+++..+| .|..|+.. |+.+..+.- ....+++++
T Consensus 187 i~r~~~d~~~g~~---~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~ 261 (307)
T COG3386 187 IHRYDLDPATGPI---GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA 261 (307)
T ss_pred EEEEecCcccCcc---CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence 8888876311100 0111122221 223355667767777776555554 89999998 999888875 447788888
Q ss_pred EcC-CCCcEEEEEECC
Q 004969 601 FSN-HSPSIFATSSFD 615 (721)
Q Consensus 601 fsP-dg~~lLaSgs~D 615 (721)
|-- +...+++|+...
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 853 333455555443
No 445
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.09 E-value=44 Score=35.27 Aligned_cols=190 Identities=12% Similarity=0.033 Sum_probs=100.0
Q ss_pred EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE
Q 004969 488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565 (721)
Q Consensus 488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l 565 (721)
.+..++. ....-..++.|. .++.++-|.|.-| .|+.+|+.+++.... ..+...---..++. -++.+
T Consensus 35 vv~~ypH-d~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~--------~~l~~~~FgEGit~--~~d~l 102 (264)
T PF05096_consen 35 VVETYPH-DPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQS--------VPLPPRYFGEGITI--LGDKL 102 (264)
T ss_dssp EEEEEE---TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEE--------EE-TTT--EEEEEE--ETTEE
T ss_pred EEEECCC-CCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEE--------EECCccccceeEEE--ECCEE
Confidence 4555542 223446688885 4677778887766 799999998764211 11111111123333 24555
Q ss_pred EEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE---
Q 004969 566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV--- 641 (721)
Q Consensus 566 ls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v--- 641 (721)
..-. .++...+||..+-+.+.++. ..+.=..++. ++ ..++.+.....++++|..+-+............++
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE---SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEecCCeEEEEccccceEEEEEe--cCCcceEEEc--CC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 5555 57999999999999999887 4455567773 55 34555555677999998876544443333333332
Q ss_pred -EEEEecCCCEEEEEe----------CCCcE-EEEEcCCC--cc-----c-ccccCeEEEEECCCCCcccccccEEEEec
Q 004969 642 -MVCFSPDDHYLLGKG----------SGTSM-FVQSLRGD--PF-----R-DFNMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 642 -sl~fSpdg~~Lasgs----------~Dg~I-~VWDl~g~--~l-----~-~~~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
-+.|- +|...|=.- ..|.| .++|+.+- .. + +-....+.++|.|... .+++||-
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLFVTGK 250 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEEEEET
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEEEEeC
Confidence 24443 343333222 23333 34444310 00 0 0124578899998874 6777764
No 446
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.08 E-value=23 Score=38.81 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=76.7
Q ss_pred CCCeEEEEEeeCCCCEEEE--EeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe-cCCCEEEEEe-C
Q 004969 498 MNSVLGLCWLKKYPSKLIA--GSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN-SMDELFLASG-Y 570 (721)
Q Consensus 498 ~~~V~sl~fsp~d~~~LaS--gs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s-p~~~~lls~g-~ 570 (721)
..-+..+.|. +++..|+. ...+ ..+.+.|..++............-+ ..-....+. +++..++..+ .
T Consensus 183 ~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-----~~~~~~~~~~~~~~~~l~~s~~ 256 (353)
T PF00930_consen 183 DYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-----DVYDPPHFLGPDGNEFLWISER 256 (353)
T ss_dssp SEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-----SSSSEEEE-TTTSSEEEEEEET
T ss_pred ccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-----eeecccccccCCCCEEEEEEEc
Confidence 3457788887 45552333 2222 3456667766544221111111000 112344443 6666665554 5
Q ss_pred CCc--EEEEECCCCcEEEEEccccCCCeE-EEEEcCCCCcEEEEEECCC----cEEEEECC-CCCceeEEEecCCCCe-E
Q 004969 571 SKN--IALYDINSGRRLQVFADMHKEHIN-VVKFSNHSPSIFATSSFDQ----DVKLWDLR-QKPIQPCYTASSSKGN-V 641 (721)
Q Consensus 571 Dg~--IrlWDl~s~~~v~~l~~~h~~~V~-sI~fsPdg~~lLaSgs~Dg----tIrIWDlr-s~~~~~~~~~~~~~~~-v 641 (721)
||. |.+++...+. .+.+.. ..-.|. -+.+++++..+..++..++ .+..-++. .+. ...+....+. .
T Consensus 257 ~G~~hly~~~~~~~~-~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~ 331 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGK-PRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHY 331 (353)
T ss_dssp TSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTE
T ss_pred CCCcEEEEEcccccc-eecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCce
Confidence 664 5566666555 334443 445564 4778888866777777633 44445555 432 2333333333 3
Q ss_pred EEEEecCCCEEEEEe
Q 004969 642 MVCFSPDDHYLLGKG 656 (721)
Q Consensus 642 sl~fSpdg~~Lasgs 656 (721)
.+.|||+|++++...
T Consensus 332 ~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 332 SASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 799999999988654
No 447
>PLN03150 hypothetical protein; Provisional
Probab=86.87 E-value=0.47 Score=56.31 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=58.8
Q ss_pred ceEeeccCCchhhHHHHHhhcCCccceEeeccccccc-ccc-cccccceeeEEecccccccccccccccccccccchhcc
Q 004969 102 LRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFR-KLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
++.++|.++.+.-..-.+++. =-.=+.|+|++|.|. .+- .++.+.+|++|+|. .|+++..-...|..|++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEEC
Confidence 455566665543222222221 123477999999986 443 57899999999999 77888766678999999999999
Q ss_pred ccccch
Q 004969 180 CETRVG 185 (721)
Q Consensus 180 ~~~~~~ 185 (721)
.+|++.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 999875
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.95 E-value=0.16 Score=59.94 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=86.1
Q ss_pred eEEEEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe----------eCCCCEEEEEeCCCeE
Q 004969 456 PRQFEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL----------KKYPSKLIAGSDNGSL 523 (721)
Q Consensus 456 V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs----------p~d~~~LaSgs~DGtV 523 (721)
+.-|.|+|- +..++..|-.+|+|++.++.+... ..+. +|...++.++|. .+||..+++++.||.+
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r--sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR--SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHH--hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 455666662 457788888899999887764322 2233 566666655542 3688888888888888
Q ss_pred EEEEcCCCCCc----cc---ccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCC
Q 004969 524 KLYDIRHMPPS----IR---GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEH 595 (721)
Q Consensus 524 rIWDi~~~~~~----~~---~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~ 595 (721)
+.|.+.-.... .. ...++.......|...+..+.. +.-.+++++++ ...+++|.....++...+ -...
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i-~~w~~~Itttd~nre~k~w~~a~w~Cll~~---~~d~ 335 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI-GKWVLRITTTDVNREEKFWAEAPWQCLLDK---LIDG 335 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc-ceeEEEEecccCCcceeEeeccchhhhhhh---cccc
Confidence 88876532211 11 1111111111111111111111 11134555554 456999988777665211 1233
Q ss_pred eEEEEEcCCCC-----------cEEEEEECCCcEEEEECCC
Q 004969 596 INVVKFSNHSP-----------SIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 596 V~sI~fsPdg~-----------~lLaSgs~DgtIrIWDlrs 625 (721)
|..|. -++|. ..+++.+.|++|++|.-+.
T Consensus 336 v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 336 VQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 44444 22221 1244567789999997654
No 449
>PHA03098 kelch-like protein; Provisional
Probab=85.53 E-value=12 Score=43.38 Aligned_cols=150 Identities=7% Similarity=0.033 Sum_probs=74.0
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCCC
Q 004969 465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPP 533 (721)
Q Consensus 465 dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~~ 533 (721)
++.+++.||.+ ..+..||..+++....-+. .+...-.+++. .++...+.||.+ ..+..||..+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-p~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL-IFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc-CcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56788888865 3577888877654332111 11111112222 355666667632 4578888877543
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCC
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNH 604 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPd 604 (721)
.. ..... ... .. .++.. .++..++.||.+ ..+.+||..+++....-.... ......+.+ +
T Consensus 419 ~~--~~~~p-~~r----~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 419 SK--GSPLP-ISH----YG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--N 487 (534)
T ss_pred ee--cCCCC-ccc----cC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--C
Confidence 11 11000 000 01 11222 245555556532 238899998765433211001 111122223 4
Q ss_pred CCcEEEEEECC-----CcEEEEECCCCCce
Q 004969 605 SPSIFATSSFD-----QDVKLWDLRQKPIQ 629 (721)
Q Consensus 605 g~~lLaSgs~D-----gtIrIWDlrs~~~~ 629 (721)
+ .+++.|+.+ +.|.+||..+....
T Consensus 488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred C-EEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 4 677777654 46888888876543
No 450
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.86 E-value=75 Score=35.93 Aligned_cols=192 Identities=14% Similarity=0.086 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCCEEEEEE------CCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeC---------
Q 004969 456 PRQFEYHPSISCLMVFGT------LDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSD--------- 519 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs------~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~--------- 519 (721)
+..+-.-| +|.+++++- .-|.+.+.|-++............ ..--..+-|. +..+.++|...
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccC
Confidence 44444456 777777642 236788888888777777654221 2334566676 56677777643
Q ss_pred -----------CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE--ecCCCEEEEEe-CCCcEEEEEC-CCCc-
Q 004969 520 -----------NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDELFLASG-YSKNIALYDI-NSGR- 583 (721)
Q Consensus 520 -----------DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~--sp~~~~lls~g-~Dg~IrlWDl-~s~~- 583 (721)
-.++.+||+.+.+.....--+..... ...+.| .|...+=++++ -.++|..|-- ..++
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~-------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM-------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW 282 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE-------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc-------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence 35899999998665221111111111 222333 24444444443 3445555443 3333
Q ss_pred ---EEEEEccc----------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEe--cC-----
Q 004969 584 ---RLQVFADM----------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTA--SS----- 636 (721)
Q Consensus 584 ---~v~~l~~~----------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~--~~----- 636 (721)
.+..+... -..-|+.|.+|.|+..+.+++=.+|.||.||+.... .+.+.+. .+
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC
Confidence 22222110 024578999999995555666679999999998742 2222211 11
Q ss_pred ----------CCCeEEEEEecCCCEEEEEe
Q 004969 637 ----------SKGNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 637 ----------~~~~vsl~fSpdg~~Lasgs 656 (721)
..++-.+..|-||+.|+..+
T Consensus 363 ~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 363 DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --TTS------S----EEE-TTSSEEEEE-
T ss_pred CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 11234678888998887654
No 451
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=84.57 E-value=0.4 Score=50.62 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=72.9
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
-|+|+.+|.-|. ..-+.+| |.=.+-+-|||+.|-+-++. +--++-+|.||+|. -|-|.++.- ..-+=.|..|.
T Consensus 307 Pkir~L~lS~N~--i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La-~N~iE~LSG--L~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNR--IRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA-QNKIETLSG--LRKLYSLVNLD 380 (490)
T ss_pred cceeEEeccccc--eeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh-hhhHhhhhh--hHhhhhheecc
Confidence 589999998753 3344442 22234578999999988874 33378899999999 898888732 23344577889
Q ss_pred cccccchhhhHHHHHhhcCCcchhhcc
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.+|+|.|| ..+..+-|||-|.-|++
T Consensus 381 l~~N~Ie~l-deV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 381 LSSNQIEEL-DEVNHIGNLPCLETLRL 406 (490)
T ss_pred ccccchhhH-HHhcccccccHHHHHhh
Confidence 999999998 77777888888877754
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.53 E-value=47 Score=35.74 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEE---EEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEcCCC
Q 004969 465 ISCLMVFGTLD-----GEIVVVNHENENIV---SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIRHM 531 (721)
Q Consensus 465 dg~~LasGs~D-----G~I~IWdl~tg~~i---~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi~~~ 531 (721)
++.+++.|+.+ ..+..+|+.+.+.. ..+........-.+++. .++...+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 44677777754 35667777665531 22221111111122232 24566666664 235777888765
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRR 584 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~ 584 (721)
+-. .+.. +.........+..-.+..++.||.++ .+..||..+.+-
T Consensus 150 ~W~--~~~~------~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWF--ELPD------FPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred Cee--ECCC------CCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 432 1110 00000001111123556666676553 356889887654
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.47 E-value=47 Score=40.25 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=54.2
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------CeE--E-EEeec------CCCCCCeEEEEEeeCC--CC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------ENI--V-SYIPS------FGAMNSVLGLCWLKKY--PS 512 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g~~--i-~~l~~------~~H~~~V~sl~fsp~d--~~ 512 (721)
+.|..|..+| +|.+++..|..| |.|..+.. |+. . +++.. ..+...|..+.|+|.. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 5689999999 999999988877 44444321 111 1 11111 1345679999999753 57
Q ss_pred EEEEEeCCCeEEEEEcCCCCC
Q 004969 513 KLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 513 ~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|+.=..|+++|+||+.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 888888999999999986443
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.45 E-value=2.8 Score=31.42 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCC
Q 004969 594 EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 594 ~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~ 626 (721)
+.|.++.|+|... .+|+.+-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998764 58888888999999999963
No 455
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=84.12 E-value=0.44 Score=57.53 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=13.7
Q ss_pred eEeecccccccccccccccceeeEEecccccccccc
Q 004969 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSF 163 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 163 (721)
+.|+|++|+|.+|- +.+.+|.+|+|. .|.|++|
T Consensus 245 k~LdLs~N~LtsLP--~lp~sL~~L~Ls-~N~L~~L 277 (788)
T PRK15387 245 RTLEVSGNQLTSLP--VLPPGLLELSIF-SNPLTHL 277 (788)
T ss_pred cEEEecCCccCccc--Ccccccceeecc-CCchhhh
Confidence 34455444444432 123344444444 3334433
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=27 Score=41.46 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec--cCCC
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD--EFDQ 552 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~--~~~~ 552 (721)
--.|+|++.. |+.+..+.. .| +.+-++.|+ +...|+....||++++|++-....... .+.+. ...-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w-~~-~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~-------svg~e~~~~~I 130 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILW-KH-GELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESN-------SVGFESQMSDI 130 (829)
T ss_pred ceeEEEEecc-ccchHHHHh-cC-CCeeeeccc--CCceEEEEeccceEEEeecchhhhccc-------ccccccccCce
Confidence 3458888875 777665553 23 478899997 567788889999999999976433110 01011 1111
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC--CeEEEEEcCCC--CcEEE-EEECCCcEEEEECCCCC
Q 004969 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE--HINVVKFSNHS--PSIFA-TSSFDQDVKLWDLRQKP 627 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~--~V~sI~fsPdg--~~lLa-Sgs~DgtIrIWDlrs~~ 627 (721)
+.+-.|+ ++..+- ..+|.+.+-.-......+++...... .-+|-...+++ ...++ ..-..+ ..++-.....
T Consensus 131 ~ec~~f~--~GVavl-t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~ 206 (829)
T KOG2280|consen 131 VECRFFH--NGVAVL-TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR 206 (829)
T ss_pred eEEEEec--CceEEE-ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc
Confidence 2333442 233322 22344333322212122232210111 11222222221 01111 110111 1222222222
Q ss_pred ceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 628 IQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 628 ~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.+...-...+..++.++.||++++|+-=...|.|.+-+..
T Consensus 207 ~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 207 VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 1211111234556689999999999988889998887765
No 457
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=83.60 E-value=0.44 Score=52.14 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=60.2
Q ss_pred Eeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhcccc-ccchhhhHHHHHhhcCCcchhhcc
Q 004969 129 VLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
.|+|-.|.|+-+ +-++.++||..|+|. .|.|+-|.++-|..++.|..|.+-+ |+|..|= -.|+-+|.+|+.|-.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~--k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKITDLP--KGAFGGLSSLQRLLL 147 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchhhhh--hhHhhhHHHHHHHhc
Confidence 366778888887 457788899999999 8999999999999999999999988 8898773 356667777777744
Q ss_pred c
Q 004969 206 Q 206 (721)
Q Consensus 206 ~ 206 (721)
-
T Consensus 148 N 148 (498)
T KOG4237|consen 148 N 148 (498)
T ss_pred C
Confidence 3
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.55 E-value=30 Score=41.50 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=68.4
Q ss_pred eEEEEEec--CCCEEEEEeCCCcEEEEECCC-------C-------------cEEEEEccccCCCeEEEEEc--CCCCcE
Q 004969 553 LTSVHVNS--MDELFLASGYSKNIALYDINS-------G-------------RRLQVFADMHKEHINVVKFS--NHSPSI 608 (721)
Q Consensus 553 V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s-------~-------------~~v~~l~~~h~~~V~sI~fs--Pdg~~l 608 (721)
|+.+.+.. ....++++.+||.|.+|...+ . ++-..+. ....+++++++ ... ++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcc-eE
Confidence 45444422 345677788999999997631 0 0112222 35578899998 655 78
Q ss_pred EEEEECCCcEEEEECCCC--CceeEEEecCCCCeE-EEEEecCC-----C-EEEEEeCCCcEEEEEc
Q 004969 609 FATSSFDQDVKLWDLRQK--PIQPCYTASSSKGNV-MVCFSPDD-----H-YLLGKGSGTSMFVQSL 666 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~--~~~~~~~~~~~~~~v-sl~fSpdg-----~-~Lasgs~Dg~I~VWDl 666 (721)
+|+++....|.||-.... +....... .+...+ +++|-++. . ++++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765542 11111111 122333 77776633 2 7888999999998887
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.49 E-value=3.8 Score=30.69 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=27.2
Q ss_pred CeEEEEEeCCCC--CEEEEEECCCeEEEEECCC
Q 004969 455 RPRQFEYHPSIS--CLMVFGTLDGEIVVVNHEN 485 (721)
Q Consensus 455 ~V~~lafsP~dg--~~LasGs~DG~I~IWdl~t 485 (721)
+|+++.|+|..+ ++|+.+-.-|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 489999998666 7999999999999999985
No 460
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.33 E-value=71 Score=39.01 Aligned_cols=160 Identities=11% Similarity=0.167 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeE-------------EEEEeeC--CCCEEEEEeC----------
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-------------GLCWLKK--YPSKLIAGSD---------- 519 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~-------------sl~fsp~--d~~~LaSgs~---------- 519 (721)
.+.+++.++.||.+.-.|.++|+....+... +.|. .+. +++ .++.++.|+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~---G~vdl~~~~g~~~~g~~~~t-s~P~V~~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNN---GTVDLTAGMGTTPPGYYYPT-SPPLVAGTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCC---CceeeecccCcCCCcccccc-cCCEEECCEEEEEecccccccccCC
Confidence 4468889999999999999999988765321 1110 000 011 1346666643
Q ss_pred CCeEEEEEcCCCCCcccccccCcce-------eEeccC-CCe-EEEEEecCCCEEEEEe------------------CCC
Q 004969 520 NGSLKLYDIRHMPPSIRGMHYGAGT-------VTFDEF-DQL-TSVHVNSMDELFLASG------------------YSK 572 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~~~~~~~~~-------~~~~~~-~~V-~sv~~sp~~~~lls~g------------------~Dg 572 (721)
+|.|+-+|.++++.......+.... ..+... ..+ ...++.+..+.++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 6899999999988754332211000 011100 111 1223333333333311 246
Q ss_pred cEEEEECCCCcEEEEEccccCC--------CeEEEEEcC-CCC--cEEEEEECCCcEEEEECCCCCc
Q 004969 573 NIALYDINSGRRLQVFADMHKE--------HINVVKFSN-HSP--SIFATSSFDQDVKLWDLRQKPI 628 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~~~h~~--------~V~sI~fsP-dg~--~lLaSgs~DgtIrIWDlrs~~~ 628 (721)
.|.-.|+++|+....++..|.+ ...-+.+.. +|. ..++.+..+|.+.+.|.++++.
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 6888899999999888742211 111122322 341 2788899999999999999854
No 461
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.16 E-value=13 Score=44.03 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEEcC-----
Q 004969 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS--PDDHYLLGKGSGTSMFVQSLR----- 667 (721)
Q Consensus 595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS--pdg~~Lasgs~Dg~I~VWDl~----- 667 (721)
.+.-+.-+..+ ...++.+....+.|||.+.+.......+..+..+..+.|. |+|+.+++.|-.+.|.+|.-.
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34445555544 3444444456799999999865544455444555577764 699999999999999988642
Q ss_pred -CCc----c-----cccc-cCeEEEEECCCCCcccccccEEEEecCC
Q 004969 668 -GDP----F-----RDFN-MSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 668 -g~~----l-----~~~~-~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..| + ..+. .+|....|.++| .+++.+|++
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-------~LvV~sGNq 149 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-------TLVVGSGNQ 149 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCC-------eEEEEeCCE
Confidence 111 2 2222 366777888888 555555544
No 462
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=83.10 E-value=0.38 Score=55.33 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=69.4
Q ss_pred cceEeeccCCchhhHHHH-HhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhc
Q 004969 101 KLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
.||.|++||+.+----+- |+++- -.--+|||+.|.++.- ....+-+++-+|||+ .|+|.+|+---|-.+--|-.|.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhc
Confidence 466678888765322111 22221 1234799999998753 122344788899999 7899999999999999999999
Q ss_pred cccccchhhhHHHHHhhcCCcc
Q 004969 179 MCETRVGNLWTTIAALSKLPSL 200 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~ 200 (721)
+.+||..-|=-.+.-|+.|.+|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhh
Confidence 9999988776666666665554
No 463
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=82.76 E-value=0.99 Score=54.08 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=81.9
Q ss_pred hcccceEeeccCC-chhhHHHHHhhcCCccceEeeccccccccc---ccccccceeeEEecccccccccccccccccccc
Q 004969 98 IDQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSSRFRKL---NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPN 173 (721)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (721)
-.|+||-.|++.. .|..+..+.+++.=.+=+.|.+++-.|-+- .+...|++|..|++. +|.|+.+ .|=+..+|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL--SGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc--HHHhcccc
Confidence 4567777777653 466777777777666666677776665443 566789999999999 9999999 88899999
Q ss_pred cchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 174 LICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
|..|+|++=.+.+ |..+-.|+.|..|+-|...
T Consensus 197 Lq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 197 LQVLSMRNLEFES-YQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HHHHhccCCCCCc-hhhHHHHhcccCCCeeecc
Confidence 9999999988885 6778888888888888543
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=27 Score=43.90 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=84.5
Q ss_pred EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-------EEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-------KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 472 Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-------~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
-+.|..+.+|+.+++.....+.. -...|..|....+.++ +++.-+.--.|.++-+.-.......-. ....
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~--~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~-f~~~ 171 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDG--LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI-FNTS 171 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccc--hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc-cccc
Confidence 35688999999999877777763 3445666665444432 233333334566666544322110000 0001
Q ss_pred eEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CCC---c-E----------------EEEEccccCCCeEEE
Q 004969 545 VTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDI----NSG---R-R----------------LQVFADMHKEHINVV 599 (721)
Q Consensus 545 ~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl----~s~---~-~----------------v~~l~~~h~~~V~sI 599 (721)
.... ....|.++.. .+++.++-+|.||. +|.+ ..| + + +..+.+.+..+|..+
T Consensus 172 ~~i~~dg~~V~~I~~-t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITY-TENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred eeeecCCceEEEEEe-ccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 1111 2235788885 44455555666664 4433 111 1 0 112233467899999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
...... .++.+-+..|+|++||+..
T Consensus 249 ~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred Eecccc-ceeeeeccCceEEEEEccC
Confidence 998766 7999999999999999986
No 465
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.18 E-value=0.79 Score=50.85 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=52.6
Q ss_pred ceEeecccccccccccccccc--eeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhh-cCCcchhh
Q 004969 127 CEVLNLRSSRFRKLNMIGEFK--RIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALS-KLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 203 (721)
=..|++.+|++-++.-...+. +|..|.+. .+.|..++ ..-..+|+|+.|.|.+|+|..+ .++. ++++|.+|
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~~~L~~L 191 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLP-SPLRNLPNLKNLDLSFNDLSDL----PKLLSNLSNLNNL 191 (394)
T ss_pred eeEEecCCcccccCccccccchhhccccccc-ccchhhhh-hhhhccccccccccCCchhhhh----hhhhhhhhhhhhe
Confidence 355778888888887766554 78888888 77777775 4556778888888888888766 6655 77777777
Q ss_pred c
Q 004969 204 R 204 (721)
Q Consensus 204 ~ 204 (721)
.
T Consensus 192 ~ 192 (394)
T COG4886 192 D 192 (394)
T ss_pred e
Confidence 3
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.71 E-value=24 Score=40.18 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=91.9
Q ss_pred ccCeEEEEEeCCCCCEEEE-EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-------CCCEEEEEeCCCeEE
Q 004969 453 SFRPRQFEYHPSISCLMVF-GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-------YPSKLIAGSDNGSLK 524 (721)
Q Consensus 453 ~~~V~~lafsP~dg~~Las-Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-------d~~~LaSgs~DGtVr 524 (721)
++.|..+-.+.++.++|.. |+.-..++-.|++.|+.+..+.. |.. | -|.|.|. ....|+.-|..+..+
T Consensus 466 Sidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 466 SIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred cCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence 3455566566656666554 55566788889999999988873 333 3 4666642 123455444444333
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
-|.+.....+.... .-.+.......+..- ...++++++|..|.|++||.-.-.....+.+ .+..|-.|..+.+
T Consensus 542 -IDPR~~gNKi~v~e----sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~ 614 (776)
T COG5167 542 -IDPRARGNKIKVVE----SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTAN 614 (776)
T ss_pred -ecccccCCceeeee----ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecC
Confidence 35443222111000 001111122233322 3568999999999999999653333333443 7788999999999
Q ss_pred CCcEEEEEECCCcEEEEECC
Q 004969 605 SPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlr 624 (721)
|..+++||- .++-+-|++
T Consensus 615 Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 615 GKHILATCK--NYLLLTDVP 632 (776)
T ss_pred CcEEEEeec--ceEEEEecc
Confidence 965555553 567777765
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=17 Score=45.63 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=25.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE 484 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~ 484 (721)
.+..++|+| ...++|.|+..|.|+++-..
T Consensus 37 ~~~~~afD~-~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDP-TQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeecc-ccceEEEEEecccEEEeccc
Confidence 466789999 88999999999999999865
No 468
>PRK10115 protease 2; Provisional
Probab=81.12 E-value=1.4e+02 Score=36.19 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=63.1
Q ss_pred cCeEEEEEeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCC-----Ce
Q 004969 454 FRPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDN-----GS 522 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~D-----Gt 522 (721)
..+..+.|+| ++++|+.+.+ ..+|++.|+.+|..+...- .. .-..++|. ++++.| ++...+ ..
T Consensus 127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~--~~~~~~w~-~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN--VEPSFVWA-NDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC--cceEEEEe-eCCCEEEEEEecCCCCCCCE
Confidence 3577899999 8888887643 2468889998886432211 11 11468998 455544 443322 36
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccC-CCeE-EEEEecCCCEEEEEeC---CCcEEEEECC
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLT-SVHVNSMDELFLASGY---SKNIALYDIN 580 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~-sv~~sp~~~~lls~g~---Dg~IrlWDl~ 580 (721)
|..+++.++...- ...+... .... .+..+.++..++..+. ++.+.+|+..
T Consensus 201 v~~h~lgt~~~~d--------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 201 VWRHTIGTPASQD--------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEECCCChhHC--------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 7777887763211 1112111 1112 2233336666555443 5679999953
No 469
>PHA02790 Kelch-like protein; Provisional
Probab=81.03 E-value=34 Score=39.36 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCCCcccccc
Q 004969 465 ISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 465 dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~~~~~~~~~~ 539 (721)
++.+.+.|+.+ ..+..||..+++....-+. .....-.+++. .++...+.||.++ ++..||.++..-... .
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l-~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~ 392 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL-LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFG--P 392 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCC-CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeC--C
Confidence 56777888764 3578888776654332211 11111122222 3566777777653 466788776433111 0
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEEEEEECC---
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFATSSFD--- 615 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lLaSgs~D--- 615 (721)
... ... .....+.+ ++.+++.| |.+.+||..+++-...-.-.+ ......+.+ +| .+.+.||.+
T Consensus 393 ~m~-~~r----~~~~~~~~---~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~-~IYviGG~~~~~ 459 (480)
T PHA02790 393 STY-YPH----YKSCALVF---GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DN-KLLLIGGFYRGS 459 (480)
T ss_pred CCC-Ccc----ccceEEEE---CCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEE--CC-EEEEECCcCCCc
Confidence 000 000 01112222 44555554 457789998765442211001 122222222 44 688888764
Q ss_pred --CcEEEEECCCCC
Q 004969 616 --QDVKLWDLRQKP 627 (721)
Q Consensus 616 --gtIrIWDlrs~~ 627 (721)
.+|..||..+++
T Consensus 460 ~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 460 YIDTIEVYNNRTYS 473 (480)
T ss_pred ccceEEEEECCCCe
Confidence 356777777654
No 470
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=80.54 E-value=1.1 Score=54.17 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=30.1
Q ss_pred cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969 126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL 187 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (721)
+-+.|+|++|+|..+-- .-.++|.+|+|+ +|.|+.+++.-. ++|+.|.+.+|++..|
T Consensus 347 sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs-~N~Lt~LP~~l~---~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 347 ELQVLDVSKNQITVLPE-TLPPTITTLDVS-RNALTNLPENLP---AALQIMQASRNNLVRL 403 (754)
T ss_pred cccEEECCCCCCCcCCh-hhcCCcCEEECC-CCcCCCCCHhHH---HHHHHHhhccCCcccC
Confidence 34556666666654421 112466666666 556666655422 2455566666555543
No 471
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=0.88 Score=48.20 Aligned_cols=208 Identities=22% Similarity=0.222 Sum_probs=104.0
Q ss_pred eeccccccccccccc----ccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHH-hhcCCcchhhc
Q 004969 130 LNLRSSRFRKLNMIG----EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAA-LSKLPSLAELR 204 (721)
Q Consensus 130 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 204 (721)
|||.-|.|.+-+-+| .+++|+||||. +|++.+--..--.-.-||+.|.+.||... ||++.. |+.||.+.||.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhhhhhh
Confidence 455555555544333 56788888888 77776643322233447888888888876 776654 45677777773
Q ss_pred cceeeecCCCCCCCCCCCCCCcccccccc------cCCCCCCC--cceeec--CCCccc----ccCCCCCc-cchhcccc
Q 004969 205 FQNWLCCDDTGNSSGSSDQDDKTDFSQLN------ICSSFGAY--GNVVIN--PDSQIL----VEDSSDDS-EVDFSIQH 269 (721)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~--~~~~~~----~~~~~~~~-~~~~~~~~ 269 (721)
.. -..--+-+.||.|+-.- . .....++. .++-+. -.||.. ++-|+.+. .++-++-+
T Consensus 153 mS--------~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 153 MS--------DNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred hc--------cchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 21 00011123455554320 0 00000000 000000 111211 22333332 12222333
Q ss_pred cchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhcccccccccccCC----CCccchHHHHHHHHHh
Q 004969 270 REYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHA----SPICFEKHYRDYMIAS 345 (721)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~Pi~~~~~yRe~~I~~ 345 (721)
.-...+++.+ .+..+|..++..+ +.-+ |.-++-.. .|+.. ..-|..+|+.
T Consensus 224 p~~~~LnL~~-------~~idswasvD~Ln---------------~f~~---l~dlRv~~~Pl~d~l~~-~err~llIaR 277 (418)
T KOG2982|consen 224 PSLSCLNLGA-------NNIDSWASVDALN---------------GFPQ---LVDLRVSENPLSDPLRG-GERRFLLIAR 277 (418)
T ss_pred Ccchhhhhcc-------cccccHHHHHHHc---------------CCch---hheeeccCCcccccccC-CcceEEEEee
Confidence 4444444333 2334454443333 2211 12222222 23322 2235567899
Q ss_pred CccccccCCCCcChHHHHhhhccccccccC
Q 004969 346 LPKLKFLDNLPIRKVDRERATITYSQYFEH 375 (721)
Q Consensus 346 Lp~Lk~Ldn~~I~k~ere~a~~~~~~~lE~ 375 (721)
|+++++|.+..|...+|+...+.|-.|+-.
T Consensus 278 L~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 278 LTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 999999999999999999888888777654
No 472
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.37 E-value=87 Score=33.51 Aligned_cols=164 Identities=10% Similarity=0.178 Sum_probs=89.1
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNI 574 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~I 574 (721)
|-...|.++.|+| +.+.|++......-.||=...|+.. . .+..........+.+.. ++.++.+. .++.+
T Consensus 83 g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~Gdli-r-------tiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLI-R-------TIPLTGFSDPETIEYIG-GNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCC-CcceEEEecCCCceEEEEecCCceE-E-------EecccccCChhHeEEec-CCEEEEEehhcceE
Confidence 4455699999995 5555655555555555544444431 1 11122222334455533 44455554 57888
Q ss_pred EEEECCCCcEEEE-----E--cc-cc-CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCC-----
Q 004969 575 ALYDINSGRRLQV-----F--AD-MH-KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKG----- 639 (721)
Q Consensus 575 rlWDl~s~~~v~~-----l--~~-~h-~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~----- 639 (721)
.++.+..+..+.. + .. .+ ....-.++|.|.+ ..|..+-.-.-++||.+.... .........+..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 8887765432211 1 11 12 5567889999998 556666666667777665432 111111111111
Q ss_pred --eE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc
Q 004969 640 --NV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 640 --~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~ 670 (721)
.+ ++.|++ .+..++-+..++.+--.|..|.+
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 12 577876 45555656666777777777664
No 473
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=80.20 E-value=1.2 Score=53.93 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=48.6
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.|-. +=..+. -..+.|+|++|++..+-. .-+..|.+|+|+ +|+|+.|+...+ ++|+.|.+
T Consensus 220 ~nL~~L~Ls~N~Lts-LP~~l~---~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls-~N~L~~LP~~l~---~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS-IPATLP---DTIQEMELSINRITELPE-RLPSALQSLDLF-HNKISCLPENLP---EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc-CChhhh---ccccEEECcCCccCcCCh-hHhCCCCEEECc-CCccCccccccC---CCCcEEEC
Confidence 478888888876542 111111 245778888887776531 123467778887 777777766443 47777777
Q ss_pred ccccchh
Q 004969 180 CETRVGN 186 (721)
Q Consensus 180 ~~~~~~~ 186 (721)
.+|++..
T Consensus 291 s~N~Lt~ 297 (754)
T PRK15370 291 YDNSIRT 297 (754)
T ss_pred CCCcccc
Confidence 7776654
No 474
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=80.12 E-value=0.83 Score=54.97 Aligned_cols=67 Identities=24% Similarity=0.382 Sum_probs=54.0
Q ss_pred eecccccccc--cccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcC
Q 004969 130 LNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKL 197 (721)
Q Consensus 130 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (721)
|.|-+|++-. .-.+-.|++|..|+|. .|.|++|+.-|+...+-|+-|.+.||+.++|=+|+|++..|
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 4444555432 1223368999999999 68899999999999999999999999999999999976543
No 475
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.27 E-value=1.4e+02 Score=36.25 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC--CCC-ccc---------ccccCcceeEeccCCCeEEEEEecC---CC
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH--MPP-SIR---------GMHYGAGTVTFDEFDQLTSVHVNSM---DE 563 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~--~~~-~~~---------~~~~~~~~~~~~~~~~V~sv~~sp~---~~ 563 (721)
-.|..|..+ +++..++-.|..|.+ |..+.. +.. .+. ...-............|..+.|||. +.
T Consensus 85 f~v~~i~~n-~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLN-PTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEEC-CCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 357788887 788888888876544 444432 110 000 0000011111123346899999997 58
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 004969 564 LFLASGYSKNIALYDINSG 582 (721)
Q Consensus 564 ~lls~g~Dg~IrlWDl~s~ 582 (721)
++++-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999753
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.74 E-value=0.29 Score=54.54 Aligned_cols=147 Identities=11% Similarity=0.201 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+....|-|.+++ ++.++.+..+..||-. |+..-... -++....++|- .+++ .++.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n---~tg~aldm~wD-kegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN---PTGKALDMAWD-KEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC---CchhHhhhhhc-cccchhhhhhhcCCCeeechhhhhhHH
Confidence 456778884545 7888888899999965 44333332 24566778886 3555 4455667889999999874321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.. .+.....-.-+.|++.....+.+-..|.++++...+.+.+...-. |...+.++++.+.+ +.+.++.
T Consensus 111 qL---------E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk-h~RRgtq~av~lEd--~vil~dc 178 (615)
T KOG2247|consen 111 QL---------ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK-HQRRGTQIAVTLED--YVILCDC 178 (615)
T ss_pred HH---------hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc-cccceeEEEecccc--eeeecCc
Confidence 11 111111111256777777777777889999999988776655543 99999999999987 6666766
Q ss_pred CCcEEE
Q 004969 615 DQDVKL 620 (721)
Q Consensus 615 DgtIrI 620 (721)
|..+.+
T Consensus 179 d~~L~v 184 (615)
T KOG2247|consen 179 DNTLSV 184 (615)
T ss_pred HHHHHH
Confidence 655443
No 477
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.69 E-value=16 Score=41.14 Aligned_cols=81 Identities=11% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC-eEEEEEcCCC-----------------CcEEEE
Q 004969 550 FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHS-----------------PSIFAT 611 (721)
Q Consensus 550 ~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~-V~sI~fsPdg-----------------~~lLaS 611 (721)
...+.+++.+|.+.+.+++..-|.|.++|+.++..++.++| ..+. +.=+.....+ ..+++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34589999999987777766669999999999998888876 3221 1111111110 013334
Q ss_pred EECCCcEEEEECCCCCceeE
Q 004969 612 SSFDQDVKLWDLRQKPIQPC 631 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~ 631 (721)
+-.-|.|.||.++++.....
T Consensus 386 aprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred eccCCeEEEEecCCCCEEEE
Confidence 56678899999999865433
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.59 E-value=1e+02 Score=33.14 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred EEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe
Q 004969 480 VVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN 559 (721)
Q Consensus 480 IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s 559 (721)
+|+.......-.+....-.+-+..+.++ +++...+..+.-++|.|+.+... ......+...+-..++..
T Consensus 68 itn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~s-------P~~~~~lnt~gyaygv~v- 136 (370)
T COG5276 68 ITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDS-------PTLIGFLNTDGYAYGVYV- 136 (370)
T ss_pred ccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCC-------cceeccccCCceEEEEEe-
Q ss_pred cCCCEEEEEeCCCcEEEEECC---CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969 560 SMDELFLASGYSKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS 636 (721)
Q Consensus 560 p~~~~lls~g~Dg~IrlWDl~---s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~ 636 (721)
.|++..++..|.-..++|+. +.+....+.. .......++.+ | ++...+..|+-+.+-|+.....-.......
T Consensus 137 -sGn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n 211 (370)
T COG5276 137 -SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN 211 (370)
T ss_pred -cCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe
Q ss_pred CCCeE-EEEEecCCCEEEEEeC
Q 004969 637 SKGNV-MVCFSPDDHYLLGKGS 657 (721)
Q Consensus 637 ~~~~v-sl~fSpdg~~Lasgs~ 657 (721)
..+.+ ++..+++..+++....
T Consensus 212 ~g~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred cCCceEEEEecCCeeEEEEccc
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.52 E-value=1.2e+02 Score=34.65 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC------CEEEEEe------
Q 004969 502 LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASG------ 569 (721)
Q Consensus 502 ~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~------~~lls~g------ 569 (721)
+.|+|. +++++|++--..|.|++++..++. ............-........|+++|+- .++++.-
T Consensus 33 w~mafl-PDG~llVtER~~G~I~~v~~~~~~--~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 33 WALLWG-PDNQLWVTERATGKILRVNPETGE--VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred eEEEEc-CCCeEEEEEecCCEEEEEeCCCCc--eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Q ss_pred ----CCCcEEEEECCCC--------cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE-------------------
Q 004969 570 ----YSKNIALYDINSG--------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV------------------- 618 (721)
Q Consensus 570 ----~Dg~IrlWDl~s~--------~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI------------------- 618 (721)
....|.-|.+... ..+..+.......-..|.|.||| .++++.+..+.-
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG-~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~ 188 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG-KIYYTIGEQGRNQGANFFLPNQAQHTPTQQE 188 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC-cEEEEECCCCCCCcccccCcchhcccccccc
Q ss_pred -----------EEEECCCCCc-----------eeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 619 -----------KLWDLRQKPI-----------QPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 619 -----------rIWDlrs~~~-----------~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
+|+.+...-. .+..-..+|..+..++|+|+|++.++
T Consensus 189 ~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 189 LNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYAS 246 (454)
T ss_pred ccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEE
No 480
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.92 E-value=1.7 Score=45.67 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=82.3
Q ss_pred hhcccccCCcceEEEee---ccccCCCchhHHHHHhhcCCCcceeeEe-ecCCccccchH--HHHHHHH-HhcccceEee
Q 004969 34 ADVRKSQNEPCTLEIIL---EYLKDIDFQPLLEVCMQIGATEIEAVDV-RSGTSCMLTGE--FALSLMH-AIDQKLRVVD 106 (721)
Q Consensus 34 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~ 106 (721)
|-.||..+.| -++.++ +++.+.-..-+ ....+-. ..+..|-| .|+ .+.| --|.+.- +--+-|.|.|
T Consensus 148 a~nKKaa~kp-~Le~vicgrNRlengs~~~~-a~~l~sh-~~lk~vki~qNg----Irpegv~~L~~~gl~y~~~LevLD 220 (388)
T COG5238 148 AYNKKAADKP-KLEVVICGRNRLENGSKELS-AALLESH-ENLKEVKIQQNG----IRPEGVTMLAFLGLFYSHSLEVLD 220 (388)
T ss_pred HHHhhhccCC-CceEEEeccchhccCcHHHH-HHHHHhh-cCceeEEeeecC----cCcchhHHHHHHHHHHhCcceeee
Confidence 5666666655 455443 55555544322 2222222 35666666 332 2222 1112222 2346689999
Q ss_pred ccCCchhhHHHHHhh----------cCCcc-ceEeecc--cccccccccccccceeeEEeccccccccccccccc-----
Q 004969 107 LHDSSFGKDFIRNLS----------QRGLM-CEVLNLR--SSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCF----- 168 (721)
Q Consensus 107 ~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----- 168 (721)
||||-|-+.-=|-|. .-|+. |= |.=+ -+-+|..|=. .|++||+|-+||++.=..+-++-|
T Consensus 221 lqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~-~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 221 LQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEK-FVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred ccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhh-cCCCccccccchhhhcCceeeeechhhhh
Confidence 999999776555332 22221 20 0000 1113333322 689999999999987665555544
Q ss_pred -ccccccchhccccccchhh
Q 004969 169 -SCMPNLICLSMCETRVGNL 187 (721)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~ 187 (721)
..||-|..|-..+||+..+
T Consensus 299 ~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 299 QDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hcccHHHHHHHHccCcchhH
Confidence 5899999999999999876
No 481
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.90 E-value=1.9e+02 Score=35.90 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=100.5
Q ss_pred eEEEE--EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFE--YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~la--fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
++.+. +.+.-.++++.+-.+ .-++..+... +......+-......+..+.-.++.|+=... ..||+++-...
T Consensus 407 ~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e--~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~~~-- 480 (1096)
T KOG1897|consen 407 MWSLKSMVDENYDNYLVLSFIS-ETRVLNISEE--VEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSAGL-- 480 (1096)
T ss_pred eeEeeccccccCCcEEEEEecc-ceEEEEEccc--eEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcchhh--
Confidence 44454 444334456555443 3455555422 2211111222233333333333444333322 35777665521
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC--CCc---E
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH--SPS---I 608 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd--g~~---l 608 (721)
...+.....++....+.+...++.++.++.+...++..+.............|.|+.++|- +++ +
T Consensus 481 ----------~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 481 ----------RSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred ----------hhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceE
Confidence 1122223334444444455677777777888888887665322222124568999999986 344 8
Q ss_pred EEEEECCCcEEEEE-CCCCCceeEEEecCCCC---eEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 609 FATSSFDQDVKLWD-LRQKPIQPCYTASSSKG---NVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 609 LaSgs~DgtIrIWD-lrs~~~~~~~~~~~~~~---~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
++.|..+..+.+-- ...........+.+..- .+...+-.|+.||.++..||.+.-|-+
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 88898877655433 33332222222222222 224556667899999999998865443
No 482
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.20 E-value=1.2 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.2
Q ss_pred cceeeEEeccccccccccccccccc
Q 004969 146 FKRIHTLNLDYSTSLTSFKEDCFSC 170 (721)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~~~~~~ 170 (721)
+.+|++|.|+ +|.|+.|+.+.|.+
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~~ 24 (26)
T smart00370 1 LPNLRELDLS-NNQLSSLPPGAFQG 24 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHccc
Confidence 3578999999 88999999998873
No 483
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.20 E-value=1.2 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.2
Q ss_pred cceeeEEeccccccccccccccccc
Q 004969 146 FKRIHTLNLDYSTSLTSFKEDCFSC 170 (721)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~~~~~~ 170 (721)
+.+|++|.|+ +|.|+.|+.+.|.+
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~~ 24 (26)
T smart00369 1 LPNLRELDLS-NNQLSSLPPGAFQG 24 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHccc
Confidence 3578999999 88999999998873
No 484
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.95 E-value=17 Score=37.28 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=49.3
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEE------cc-------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969 558 VNSMDELFLASGYSKNIALYDINSGRRLQVF------AD-------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 558 ~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l------~~-------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr 624 (721)
+...+.++++...+|.+++||+.+++.+..- -. .....|..+.++.+| .-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccc
Confidence 3357889999999999999999998765432 11 144677888888777 5555544 5778888877
Q ss_pred CCCc
Q 004969 625 QKPI 628 (721)
Q Consensus 625 s~~~ 628 (721)
-+..
T Consensus 96 L~~W 99 (219)
T PF07569_consen 96 LGCW 99 (219)
T ss_pred ccee
Confidence 6543
No 485
>PRK10115 protease 2; Provisional
Probab=76.83 E-value=38 Score=40.86 Aligned_cols=111 Identities=10% Similarity=0.113 Sum_probs=67.4
Q ss_pred eEEEEEecCCCEEEEEeC-C----CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEE
Q 004969 553 LTSVHVNSMDELFLASGY-S----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-----QDVKLWD 622 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g~-D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-----gtIrIWD 622 (721)
+..+.++|++.+++.+.+ + ..|++.|+.+|+.+..... . .-..++|.+++..++.+...+ ..|+.++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-N--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-C--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788899888877653 2 3588999998864432221 1 125699999985555555432 3577888
Q ss_pred CCCC--CceeEEEecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEc
Q 004969 623 LRQK--PIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSL 666 (721)
Q Consensus 623 lrs~--~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl 666 (721)
+.++ .-..++.-......+....+.++++++..+. ++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 3333444222222224444558888775543 346888884
No 486
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.66 E-value=1.4 Score=48.45 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=39.7
Q ss_pred ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
++.+++|.+|||. +|.||.|.++=|.....|.-|.+.+|++... .-.++..|..|+-|
T Consensus 270 f~~L~~L~~lnls-nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v--~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 270 FKKLPNLRKLNLS-NNKITRIEDGAFEGAAELQELYLTRNKLEFV--SSGMFQGLSGLKTL 327 (498)
T ss_pred HhhcccceEeccC-CCccchhhhhhhcchhhhhhhhcCcchHHHH--HHHhhhccccceee
Confidence 4566777777777 7777777777777777777777777777654 33455566666555
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.64 E-value=56 Score=30.89 Aligned_cols=117 Identities=5% Similarity=0.032 Sum_probs=0.0
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECC--------CCcEEEEEccccCCCeEEEE---EcCCCCcEEEEEECCCcEEEE
Q 004969 553 LTSVHVNSMDELFLASGYSKNIALYDIN--------SGRRLQVFADMHKEHINVVK---FSNHSPSIFATSSFDQDVKLW 621 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~--------s~~~v~~l~~~h~~~V~sI~---fsPdg~~lLaSgs~DgtIrIW 621 (721)
|..-.|....+.+++++..|.|.|++.. ....+..+. -...|++++ |.|+..+-++.-+....+-.|
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Q ss_pred ECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 004969 622 DLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF 671 (721)
Q Consensus 622 Dlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l 671 (721)
|+....-.-...++.....+ .-.+.....-++..+.+..|.-||..|...
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
No 488
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=76.46 E-value=0.79 Score=53.77 Aligned_cols=105 Identities=25% Similarity=0.410 Sum_probs=79.9
Q ss_pred ccceEeeccCCchhh-HHHHHhhcCCccceEeeccccccccccccccc-ceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGK-DFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEF-KRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
+-||-.+|+-|-|-| +|+|+|.+- +.|||+.|++|++--+|.- -.|..|||. +|-+|.+. =-..+-+|.-|
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~L----khLDlsyN~L~~vp~l~~~gc~L~~L~lr-nN~l~tL~--gie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKL----KHLDLSYNCLRHVPQLSMVGCKLQLLNLR-NNALTTLR--GIENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccc----cccccccchhccccccchhhhhheeeeec-ccHHHhhh--hHHhhhhhhcc
Confidence 346778888888876 789988753 5699999999987655521 239999999 99999884 34677888899
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccc-eeeecC
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQ-NWLCCD 212 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (721)
.+..|-+.+- .-..+|.-|.+|++|.+| |=+||.
T Consensus 260 DlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 260 DLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred chhHhhhhcc-hhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999998865 555777777788888776 456664
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.87 E-value=2e+02 Score=35.23 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccCCCeEEEEEe---cC---CCEEEEEeCCCcEEEEECC------C---------CcEEEEEcc--ccCCCeEEEEEcCC
Q 004969 548 DEFDQLTSVHVN---SM---DELFLASGYSKNIALYDIN------S---------GRRLQVFAD--MHKEHINVVKFSNH 604 (721)
Q Consensus 548 ~~~~~V~sv~~s---p~---~~~lls~g~Dg~IrlWDl~------s---------~~~v~~l~~--~h~~~V~sI~fsPd 604 (721)
....+|..|+|. .. ....+++-....+.|+... . ..++..+.. ..+.+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 455678888885 21 1134444455566666611 1 123334431 12346778999998
Q ss_pred CCcEEEEEECCCcEEEEECCCC--CceeEE------------EecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 004969 605 SPSIFATSSFDQDVKLWDLRQK--PIQPCY------------TASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~--~~~~~~------------~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~ 670 (721)
....||.-...|...|||+... ...... ......++-.+.|.++-..|+..+ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 8789999999999999999211 100011 011122333789988888887666 6678899988554
Q ss_pred ccc-c-----ccCeEEEEECCC
Q 004969 671 FRD-F-----NMSILAAYTRPS 686 (721)
Q Consensus 671 l~~-~-----~~~V~~v~fsP~ 686 (721)
... . ...|..+.-+|.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ccchhccCCChhheeeEEecCC
Confidence 322 1 235777777776
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.42 E-value=1.1e+02 Score=38.17 Aligned_cols=177 Identities=12% Similarity=0.125 Sum_probs=97.4
Q ss_pred eEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC------------CeEEEEEcCCCCCcccccccCc
Q 004969 477 EIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN------------GSLKLYDIRHMPPSIRGMHYGA 542 (721)
Q Consensus 477 ~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D------------GtVrIWDi~~~~~~~~~~~~~~ 542 (721)
.|++.|..+|+.+..+.... ..-.|.++.|+..+...++.++.+ |.++.|++-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--------- 924 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--------- 924 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc---------
Confidence 48888888888776665421 123466777764444423333322 2344444322111
Q ss_pred ceeEeccCCCe--EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEEEEEECCCcEE
Q 004969 543 GTVTFDEFDQL--TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFATSSFDQDVK 619 (721)
Q Consensus 543 ~~~~~~~~~~V--~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lLaSgs~DgtIr 619 (721)
...+-|...+ .-.++.|-.+.+++ |....+++||+...++++.....+ ...|+.+++.- ..+++|..--.++
T Consensus 925 -~lellh~T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 925 -KLELLHKTEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG---ARIVVGDIQESVH 999 (1205)
T ss_pred -eeeeeeccCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc---eEEEEeeccceEE
Confidence 2223333221 12244466665554 556789999999888877655333 56788888753 3566665544455
Q ss_pred E--EECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 620 L--WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 620 I--WDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+ |+....+. .++.-..-..++...+--|-..++.+..=|.+.+-.+..
T Consensus 1000 ~~~y~~~~n~l-~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1000 FVRYRREDNQL-IVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEEecCCCeE-EEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 4 45444332 223333333444445555677778777777777766553
No 491
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.13 E-value=35 Score=38.87 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=79.2
Q ss_pred CCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC------cEEEEEECCCcEEEEECCCCCc-eeEEE
Q 004969 562 DELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP------SIFATSSFDQDVKLWDLRQKPI-QPCYT 633 (721)
Q Consensus 562 ~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~------~lLaSgs~DgtIrIWDlrs~~~-~~~~~ 633 (721)
...++..| .-..++--|+..|+.+-...- |.. | -+.|.|+.. ..-+.|-.+..|.-.|.|-... ..+..
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~-~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeec-CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 34444443 456688889999999988874 443 3 678888641 1223455555565557664321 11111
Q ss_pred ecCCCC--eEEEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEECCCCCcccccccEEEEecC
Q 004969 634 ASSSKG--NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 634 ~~~~~~--~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
...-.. ..+..-.....|+++|+..|-|++||--|.. +.++...|..+..+.+|+ .+||+|-.
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk------~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGK------HILATCKN 624 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCc------EEEEeecc
Confidence 111111 1122223356799999999999999965432 455567888888888886 66777643
No 492
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.00 E-value=1.4e+02 Score=33.61 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=58.8
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----EEEEEccc-cCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969 550 FDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----RLQVFADM-HKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623 (721)
Q Consensus 550 ~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-----~v~~l~~~-h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl 623 (721)
...++++.+.+++..++++ .+|.+. |....++ ........ -...+..+.|.+++ . ++.++..|.+....-
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRSTD 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeCC
Confidence 3457888887776666554 555543 3344443 22222210 12358889999887 4 455556787766543
Q ss_pred CCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 624 RQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 624 rs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
.............-.... .+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 322222111111111223 78888777777655 47776544
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=74.97 E-value=1.2e+02 Score=32.42 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCEEEEEeC-----CCcEEEEECCCCcEEEE--EccccCCCeEEEEEcCCCCcEEEEEECCC----cEEEEECCCCCce
Q 004969 561 MDELFLASGY-----SKNIALYDINSGRRLQV--FADMHKEHINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQ 629 (721)
Q Consensus 561 ~~~~lls~g~-----Dg~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg----tIrIWDlrs~~~~ 629 (721)
++..++.||. ...+..||+.+.+-... +.. .......+...++ .+.+.|+.++ .+.+||..+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG--EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC--CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCeeE
Confidence 4555566663 24688899887654321 221 1111112222244 6788887764 3568999887554
Q ss_pred eEEEecCCCCeE----EE-EEecCCCEEEEEeCC
Q 004969 630 PCYTASSSKGNV----MV-CFSPDDHYLLGKGSG 658 (721)
Q Consensus 630 ~~~~~~~~~~~v----sl-~fSpdg~~Lasgs~D 658 (721)
.+........+. .. ....++..++.|+.+
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 332211101111 11 122356777777765
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=74.83 E-value=1.3e+02 Score=32.56 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=20.7
Q ss_pred cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
.+.+||..+.+...+..++... ....+..-+++.++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~-~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGL-AYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCc-eeeEEEEcCCEEEEEeccC
Confidence 4678888876554333332211 1122333466666666644
No 495
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.60 E-value=1.6 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=15.7
Q ss_pred eeeEEecccccccccccccccccc
Q 004969 148 RIHTLNLDYSTSLTSFKEDCFSCM 171 (721)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~~~~~~~ 171 (721)
+|+.|+|.+ |.|+.|+++ |..|
T Consensus 1 ~L~~Ldls~-n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSG-NNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETS-SEESEEGTT-TTT-
T ss_pred CccEEECCC-CcCEeCChh-hcCC
Confidence 477888884 488888887 6543
No 496
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.14 E-value=27 Score=35.76 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF------DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~------~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~ 582 (721)
..+.+|++-+.+|.+++||+.+++..+....-.. .... .....|..+.++.+|--+++- .+|....||..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence 4678899999999999999999776433311100 0000 233457888887666555544 4577788887755
Q ss_pred cEEE
Q 004969 583 RRLQ 586 (721)
Q Consensus 583 ~~v~ 586 (721)
.-+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5444
No 497
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.04 E-value=52 Score=37.73 Aligned_cols=75 Identities=8% Similarity=0.096 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEC---------CCCcEEEEE----------ccccCCCeEEEEEcCCC--CcEEE
Q 004969 552 QLTSVHVNSMDELFLASGYSKNIALYDI---------NSGRRLQVF----------ADMHKEHINVVKFSNHS--PSIFA 610 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl---------~s~~~v~~l----------~~~h~~~V~sI~fsPdg--~~lLa 610 (721)
.|..+..++.|..++.+|.+|.+.++=. ..|+++..- .....-.+..++|+|+. ...+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3567778888888888888887665431 234332211 11112245678999987 56788
Q ss_pred EEECCCcEEEEECCCC
Q 004969 611 TSSFDQDVKLWDLRQK 626 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~ 626 (721)
.-+.|.+||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8888999999999875
No 498
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.67 E-value=2.4e+02 Score=34.61 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=102.4
Q ss_pred CeEEEEEe---CC---CCCEEEEEECCCeEEEEECCCC---------------eEEEEeecC-CCCCCeEEEEEeeCCCC
Q 004969 455 RPRQFEYH---PS---ISCLMVFGTLDGEIVVVNHENE---------------NIVSYIPSF-GAMNSVLGLCWLKKYPS 512 (721)
Q Consensus 455 ~V~~lafs---P~---dg~~LasGs~DG~I~IWdl~tg---------------~~i~~l~~~-~H~~~V~sl~fsp~d~~ 512 (721)
.|..|.|. .. ...+|++ -....+.|+...-. .++..+... -...+..+|+|+|.+..
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Confidence 58888888 21 2235544 44556777772211 123333311 11246778999998999
Q ss_pred EEEEEeCCCeEEEEEcCCCCC----cccccccCcceeEe--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 004969 513 KLIAGSDNGSLKLYDIRHMPP----SIRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ 586 (721)
Q Consensus 513 ~LaSgs~DGtVrIWDi~~~~~----~~~~~~~~~~~~~~--~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~ 586 (721)
.||.....|.-.||++..... .+.......+.+.+ ...+.-..+.|.++...++++.. ..+.++|+.+.....
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~ 238 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQTE 238 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCccc
Confidence 999999999999999932221 11111111122201 11233457888777777777664 568999999776533
Q ss_pred -EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC--CceeEEEec
Q 004969 587 -VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK--PIQPCYTAS 635 (721)
Q Consensus 587 -~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~--~~~~~~~~~ 635 (721)
.........|..+.-+|..+..++.-. ...|-..|+... ....+....
T Consensus 239 ~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwk 289 (765)
T PF10214_consen 239 YLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWK 289 (765)
T ss_pred hhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecc
Confidence 222225578889998888433333322 256777777763 233444443
No 499
>PLN02193 nitrile-specifier protein
Probab=71.60 E-value=1.6e+02 Score=33.73 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=76.5
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCC
Q 004969 465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMP 532 (721)
Q Consensus 465 dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~ 532 (721)
++.+++.|+.+ ..+.+||+.+.+....-... .....-.++.. .++...+.|+.++ .+..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 45677777765 36888898876554321110 01111122222 2455666666543 46677776643
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEEEcc---ccCCC-eEEEEEcCC
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFAD---MHKEH-INVVKFSNH 604 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----g~IrlWDl~s~~~v~~l~~---~h~~~-V~sI~fsPd 604 (721)
-........... .......+.+ .+..++.+|.+ ..+.+||+.+.+-...-.. ..... ..++.+ +
T Consensus 306 W~~~~~~~~~~~----~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~ 377 (470)
T PLN02193 306 WFHCSTPGDSFS----IRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--G 377 (470)
T ss_pred EEeCCCCCCCCC----CCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--C
Confidence 211110000000 0011112222 55666666654 4689999988765432210 01111 222333 3
Q ss_pred CCcEEEEEECC--------------CcEEEEECCCCCceeE
Q 004969 605 SPSIFATSSFD--------------QDVKLWDLRQKPIQPC 631 (721)
Q Consensus 605 g~~lLaSgs~D--------------gtIrIWDlrs~~~~~~ 631 (721)
+ ++++.|+.+ ..+.+||+.+.+...+
T Consensus 378 ~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 378 K-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred C-EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 4 677777753 2478999988765443
No 500
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=1.2e+02 Score=30.90 Aligned_cols=174 Identities=11% Similarity=0.058 Sum_probs=83.9
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE-EEEEeCCCeEEEEEcCCCCCcccccccC
Q 004969 465 ISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPSIRGMHYG 541 (721)
Q Consensus 465 dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~-LaSgs~DGtVrIWDi~~~~~~~~~~~~~ 541 (721)
++.++.+.+. ...|++||+.+|+.+...+... ..+.+=-.. .-++. -.-.=.+|.-.++|.++-+..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~t~~~lg------ 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGIT-KLGDYFYQLTWKEGVAFKYDADTLEELG------ 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--cccccccee-eccceEEEEEeccceeEEEChHHhhhhc------
Confidence 3455555554 3479999999998877655321 111110000 11122 2223356777888888744321
Q ss_pred cceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE----EEEEccccCCCeEEEEEcCCCCcEEEEEECCCc
Q 004969 542 AGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR----LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (721)
Q Consensus 542 ~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~----v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt 617 (721)
...+ .+.=+.++ .++..++.+....+++.-|..+-.. ..++.+..-..++-+.|- +| .+.|--=.+..
T Consensus 126 --~~~y--~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG-~lyANVw~t~~ 197 (262)
T COG3823 126 --RFSY--EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG-ELYANVWQTTR 197 (262)
T ss_pred --cccc--CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc-EEEEeeeeecc
Confidence 1122 22223444 3666677776667788888765322 222222112223333343 33 34443333444
Q ss_pred EEEEECCCCCceeEEEec---------C-CCCeE-EEEEecCC-CEEEEE
Q 004969 618 VKLWDLRQKPIQPCYTAS---------S-SKGNV-MVCFSPDD-HYLLGK 655 (721)
Q Consensus 618 IrIWDlrs~~~~~~~~~~---------~-~~~~v-sl~fSpdg-~~Lasg 655 (721)
|-..|..+++......+. . +.... .+++.|++ +++++|
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 444455554433222221 1 11222 68899877 555554
Done!