Query 004969
Match_columns 721
No_of_seqs 573 out of 3671
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 2.2E-30 7.5E-35 273.5 35.8 227 455-703 15-249 (304)
2 1got_B GT-beta; complex (GTP-b 100.0 1.2E-29 4.2E-34 272.0 37.0 236 455-703 57-333 (340)
3 4gqb_B Methylosome protein 50; 100.0 4.7E-30 1.6E-34 277.5 31.3 228 455-703 84-321 (344)
4 3ow8_A WD repeat-containing pr 100.0 1.7E-29 5.7E-34 269.7 34.3 225 455-703 82-311 (321)
5 1vyh_C Platelet-activating fac 100.0 9.6E-30 3.3E-34 280.7 32.9 225 455-703 110-359 (410)
6 2pbi_B Guanine nucleotide-bind 100.0 5.2E-29 1.8E-33 269.4 37.3 228 455-703 66-347 (354)
7 1vyh_C Platelet-activating fac 100.0 1.4E-29 4.7E-34 279.4 32.8 226 455-703 152-401 (410)
8 2pm7_B Protein transport prote 100.0 2.1E-29 7.2E-34 265.1 32.4 231 455-703 11-275 (297)
9 3ow8_A WD repeat-containing pr 100.0 5.7E-29 1.9E-33 265.6 33.6 228 455-703 34-269 (321)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-29 1.4E-33 268.8 32.6 230 455-703 18-273 (345)
11 2ynn_A Coatomer subunit beta'; 100.0 4.5E-29 1.6E-33 263.4 32.1 229 455-703 57-293 (304)
12 3frx_A Guanine nucleotide-bind 100.0 3E-28 1E-32 259.1 35.5 226 455-703 19-258 (319)
13 4ery_A WD repeat-containing pr 100.0 7.4E-28 2.5E-32 253.4 37.7 197 455-667 25-222 (312)
14 4gqb_B Methylosome protein 50; 100.0 1.3E-28 4.3E-33 266.3 32.3 202 455-670 129-333 (344)
15 1erj_A Transcriptional repress 100.0 2.7E-28 9.3E-33 267.1 35.3 233 455-703 125-379 (393)
16 3iz6_a 40S ribosomal protein R 100.0 7.7E-29 2.6E-33 270.2 29.1 236 455-703 68-365 (380)
17 3bg1_A Protein SEC13 homolog; 100.0 2E-29 7E-34 267.8 23.5 230 455-703 15-283 (316)
18 3frx_A Guanine nucleotide-bind 100.0 7.3E-28 2.5E-32 256.1 35.5 223 455-703 67-307 (319)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 7E-28 2.4E-32 259.1 33.5 231 455-703 63-325 (345)
20 4e54_B DNA damage-binding prot 100.0 4.3E-29 1.5E-33 276.9 21.3 204 455-667 121-326 (435)
21 2hes_X YDR267CP; beta-propelle 100.0 3.1E-27 1.1E-31 252.5 33.7 232 455-703 16-270 (330)
22 2xzm_R RACK1; ribosome, transl 100.0 5.5E-27 1.9E-31 251.4 35.0 226 455-703 78-330 (343)
23 4g56_B MGC81050 protein; prote 100.0 6.6E-28 2.3E-32 261.2 27.4 234 455-703 44-291 (357)
24 2hes_X YDR267CP; beta-propelle 100.0 2.9E-27 9.8E-32 252.8 31.5 230 455-703 60-318 (330)
25 2xzm_R RACK1; ribosome, transl 100.0 1.3E-26 4.6E-31 248.5 36.1 225 455-702 23-275 (343)
26 3f3f_A Nucleoporin SEH1; struc 100.0 2.8E-27 9.7E-32 247.6 29.6 238 455-703 13-327 (351)
27 4aow_A Guanine nucleotide-bind 100.0 3E-26 1E-30 241.7 37.3 234 455-703 40-327 (340)
28 3dwl_C Actin-related protein 2 100.0 1.9E-28 6.5E-33 263.9 20.0 230 455-703 13-272 (377)
29 1erj_A Transcriptional repress 100.0 8.5E-27 2.9E-31 255.2 32.5 227 455-703 66-331 (393)
30 4g56_B MGC81050 protein; prote 100.0 3.2E-27 1.1E-31 255.8 28.6 199 455-667 141-342 (357)
31 1nr0_A Actin interacting prote 100.0 1E-26 3.5E-31 269.7 34.5 235 455-703 149-512 (611)
32 3jrp_A Fusion protein of prote 100.0 5.8E-27 2E-31 250.1 29.9 230 455-703 13-277 (379)
33 3zwl_B Eukaryotic translation 100.0 9.5E-26 3.3E-30 239.4 37.3 234 455-703 34-336 (369)
34 1nr0_A Actin interacting prote 100.0 9.1E-27 3.1E-31 270.2 31.5 223 455-703 61-345 (611)
35 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-26 8E-31 245.6 31.1 228 455-701 10-263 (372)
36 1gxr_A ESG1, transducin-like e 100.0 8.6E-26 2.9E-30 237.0 34.4 228 455-703 53-286 (337)
37 3k26_A Polycomb protein EED; W 100.0 6.9E-27 2.4E-31 248.3 24.6 226 455-703 71-356 (366)
38 3mmy_A MRNA export factor; mRN 100.0 4.4E-26 1.5E-30 241.9 30.6 228 455-703 41-336 (368)
39 2ymu_A WD-40 repeat protein; u 100.0 6.6E-26 2.3E-30 258.1 33.9 221 455-703 346-570 (577)
40 3vl1_A 26S proteasome regulato 100.0 2.2E-26 7.5E-31 251.1 28.5 236 455-703 141-410 (420)
41 1got_B GT-beta; complex (GTP-b 99.9 5.1E-26 1.7E-30 243.9 30.0 193 455-665 145-340 (340)
42 2pbi_B Guanine nucleotide-bind 99.9 6.9E-26 2.4E-30 244.8 31.3 195 455-665 156-354 (354)
43 4a11_B DNA excision repair pro 99.9 9.7E-26 3.3E-30 243.1 31.7 230 455-703 45-355 (408)
44 4aez_A CDC20, WD repeat-contai 99.9 1.1E-25 3.6E-30 246.5 32.4 225 455-703 136-370 (401)
45 1gxr_A ESG1, transducin-like e 99.9 4.1E-25 1.4E-29 231.9 35.2 224 455-703 99-327 (337)
46 3dm0_A Maltose-binding peripla 99.9 1.5E-25 5E-30 263.4 34.1 227 455-702 384-622 (694)
47 3dm0_A Maltose-binding peripla 99.9 1.5E-25 5E-30 263.5 33.9 227 455-703 432-683 (694)
48 3ei3_B DNA damage-binding prot 99.9 2E-25 6.7E-30 241.4 31.8 202 455-667 75-281 (383)
49 3dw8_B Serine/threonine-protei 99.9 8.9E-26 3E-30 248.0 29.3 236 454-703 29-363 (447)
50 3iz6_a 40S ribosomal protein R 99.9 3.4E-26 1.2E-30 249.2 25.6 206 455-669 159-376 (380)
51 2pm9_A Protein WEB1, protein t 99.9 4.4E-26 1.5E-30 247.6 26.3 238 455-703 69-327 (416)
52 2pm7_B Protein transport prote 99.9 1.6E-25 5.3E-30 235.5 29.2 203 455-667 55-284 (297)
53 1k8k_C P40, ARP2/3 complex 41 99.9 2.3E-25 7.7E-30 237.9 30.6 234 455-703 54-351 (372)
54 2aq5_A Coronin-1A; WD40 repeat 99.9 7E-26 2.4E-30 247.5 26.6 223 455-691 83-329 (402)
55 1r5m_A SIR4-interacting protei 99.9 4.3E-25 1.5E-29 239.1 31.7 232 455-703 110-415 (425)
56 4ggc_A P55CDC, cell division c 99.9 9.2E-25 3.2E-29 228.0 33.1 235 454-703 26-305 (318)
57 2xyi_A Probable histone-bindin 99.9 1.1E-25 3.8E-30 249.3 27.3 236 455-703 130-400 (430)
58 3vl1_A 26S proteasome regulato 99.9 4.2E-25 1.4E-29 240.9 30.6 225 456-703 100-355 (420)
59 2j04_B YDR362CP, TAU91; beta p 99.9 3.1E-26 1.1E-30 261.8 22.4 228 465-703 172-418 (524)
60 3mkq_A Coatomer beta'-subunit; 99.9 5.5E-25 1.9E-29 261.0 33.4 226 455-703 15-249 (814)
61 3i2n_A WD repeat-containing pr 99.9 1.8E-25 6.2E-30 236.9 26.2 233 455-703 67-343 (357)
62 4gga_A P55CDC, cell division c 99.9 2.9E-24 9.9E-29 236.7 36.8 225 455-703 149-385 (420)
63 3dw8_B Serine/threonine-protei 99.9 1.1E-25 3.7E-30 247.3 24.1 232 455-703 95-437 (447)
64 2ymu_A WD-40 repeat protein; u 99.9 2E-24 6.7E-29 245.9 34.6 221 455-703 305-529 (577)
65 1yfq_A Cell cycle arrest prote 99.9 4.8E-25 1.6E-29 232.9 25.9 222 455-703 13-272 (342)
66 3gre_A Serine/threonine-protei 99.9 1.4E-25 4.7E-30 247.0 22.0 209 455-667 65-291 (437)
67 3odt_A Protein DOA1; ubiquitin 99.9 1.1E-23 3.8E-28 218.9 35.2 221 455-687 20-278 (313)
68 4h5i_A Guanine nucleotide-exch 99.9 7.1E-25 2.4E-29 238.3 27.3 196 455-667 135-342 (365)
69 1r5m_A SIR4-interacting protei 99.9 4.8E-24 1.6E-28 230.8 33.2 226 455-703 47-351 (425)
70 4ery_A WD repeat-containing pr 99.9 3.2E-24 1.1E-28 225.5 30.6 225 455-702 67-299 (312)
71 1sq9_A Antiviral protein SKI8; 99.9 1.3E-24 4.4E-29 234.9 28.2 227 455-703 18-312 (397)
72 3ei3_B DNA damage-binding prot 99.9 2.5E-24 8.5E-29 232.8 30.4 224 455-701 120-371 (383)
73 3i2n_A WD repeat-containing pr 99.9 1.6E-24 5.5E-29 229.6 28.3 228 455-703 20-281 (357)
74 1sq9_A Antiviral protein SKI8; 99.9 2E-24 7E-29 233.3 28.9 239 455-703 64-385 (397)
75 3jro_A Fusion protein of prote 99.9 5.4E-25 1.9E-29 261.9 26.3 230 455-703 11-275 (753)
76 2oaj_A Protein SNI1; WD40 repe 99.9 1.6E-24 5.5E-29 262.9 30.3 223 455-703 19-297 (902)
77 2pm9_A Protein WEB1, protein t 99.9 1.8E-25 6.1E-30 242.8 19.7 235 455-703 115-404 (416)
78 2j04_B YDR362CP, TAU91; beta p 99.9 2E-25 7E-30 255.0 20.8 218 455-688 209-456 (524)
79 3v7d_B Cell division control p 99.9 1.2E-23 4E-28 233.4 34.3 229 455-702 164-411 (464)
80 3jrp_A Fusion protein of prote 99.9 4.1E-24 1.4E-28 228.0 28.7 205 455-667 57-286 (379)
81 3lrv_A PRE-mRNA-splicing facto 99.9 5.8E-25 2E-29 235.4 22.1 220 465-702 47-280 (343)
82 3k26_A Polycomb protein EED; W 99.9 1.2E-24 4E-29 231.1 23.7 228 455-703 20-308 (366)
83 3sfz_A APAF-1, apoptotic pepti 99.9 8.8E-24 3E-28 263.1 35.0 227 455-703 617-903 (1249)
84 4h5i_A Guanine nucleotide-exch 99.9 4.9E-24 1.7E-28 231.6 28.5 186 499-704 134-334 (365)
85 3dwl_C Actin-related protein 2 99.9 6.3E-25 2.1E-29 236.3 20.7 198 455-667 57-280 (377)
86 2aq5_A Coronin-1A; WD40 repeat 99.9 2.6E-24 8.9E-29 235.0 25.6 224 456-687 37-279 (402)
87 4e54_B DNA damage-binding prot 99.9 1.5E-24 5E-29 240.4 23.3 229 455-702 166-420 (435)
88 1yfq_A Cell cycle arrest prote 99.9 9E-24 3.1E-28 223.2 27.9 219 455-703 58-313 (342)
89 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-23 4.7E-28 233.4 30.8 223 455-687 104-366 (450)
90 3mkq_A Coatomer beta'-subunit; 99.9 1.2E-23 4E-28 249.5 31.5 219 455-688 57-283 (814)
91 3v7d_B Cell division control p 99.9 6.5E-23 2.2E-27 227.4 35.4 216 456-703 125-371 (464)
92 3f3f_A Nucleoporin SEH1; struc 99.9 1.3E-23 4.6E-28 219.6 28.1 209 455-667 59-336 (351)
93 3gre_A Serine/threonine-protei 99.9 2.8E-24 9.6E-29 236.6 23.5 229 455-703 113-430 (437)
94 3bg1_A Protein SEC13 homolog; 99.9 4.4E-24 1.5E-28 226.6 23.5 204 455-667 59-292 (316)
95 4aez_A CDC20, WD repeat-contai 99.9 3.8E-23 1.3E-27 226.1 31.4 220 455-701 95-322 (401)
96 4gq1_A NUP37; propeller, trans 99.9 2E-24 6.9E-29 236.7 21.2 225 462-703 97-380 (393)
97 4ggc_A P55CDC, cell division c 99.9 8.8E-23 3E-27 212.9 32.3 201 455-667 69-314 (318)
98 1pgu_A Actin interacting prote 99.9 5E-23 1.7E-27 234.9 29.7 229 455-703 20-273 (615)
99 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-23 4.3E-28 225.0 23.2 213 455-685 78-309 (343)
100 2xyi_A Probable histone-bindin 99.9 5.1E-23 1.7E-27 227.9 28.5 204 455-668 183-410 (430)
101 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.3E-23 2.2E-27 228.1 28.7 226 455-701 6-326 (450)
102 4a11_B DNA excision repair pro 99.9 2.2E-22 7.5E-27 216.8 31.2 202 454-668 100-365 (408)
103 4aow_A Guanine nucleotide-bind 99.9 1.8E-22 6.2E-27 212.6 29.2 205 455-667 88-336 (340)
104 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-22 3.6E-27 219.9 27.8 221 455-703 21-326 (355)
105 1pgu_A Actin interacting prote 99.9 9.4E-22 3.2E-26 224.4 35.2 228 455-703 162-604 (615)
106 1p22_A F-BOX/WD-repeat protein 99.9 2.6E-22 8.8E-27 221.9 29.0 216 455-703 175-404 (435)
107 2j04_A TAU60, YPL007P, hypothe 99.9 4.9E-23 1.7E-27 233.7 23.2 222 455-703 87-351 (588)
108 2j04_A TAU60, YPL007P, hypothe 99.9 5.4E-23 1.9E-27 233.3 23.2 219 455-703 17-288 (588)
109 3sfz_A APAF-1, apoptotic pepti 99.9 5.2E-22 1.8E-26 247.2 34.3 228 454-703 658-982 (1249)
110 3odt_A Protein DOA1; ubiquitin 99.9 7.3E-22 2.5E-26 205.2 29.4 191 455-669 106-297 (313)
111 3zwl_B Eukaryotic translation 99.9 1.1E-21 3.9E-26 207.9 30.8 204 455-668 76-346 (369)
112 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.3E-21 7.9E-26 214.5 33.8 214 455-703 201-428 (445)
113 4gga_A P55CDC, cell division c 99.9 9.7E-22 3.3E-26 216.5 30.4 225 454-702 106-340 (420)
114 1p22_A F-BOX/WD-repeat protein 99.9 1.3E-21 4.5E-26 216.3 31.4 213 455-703 135-355 (435)
115 2w18_A PALB2, fancn, partner a 99.9 3.3E-22 1.1E-26 214.5 24.9 199 455-667 113-356 (356)
116 3jro_A Fusion protein of prote 99.9 2.4E-22 8.2E-27 239.1 25.3 203 455-667 55-284 (753)
117 2oaj_A Protein SNI1; WD40 repe 99.9 4.2E-22 1.4E-26 241.7 27.6 145 553-703 438-651 (902)
118 4gq1_A NUP37; propeller, trans 99.9 1.5E-22 5.2E-27 221.7 20.4 208 455-668 138-389 (393)
119 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-20 3.5E-25 209.3 34.7 213 455-703 161-381 (445)
120 3mmy_A MRNA export factor; mRN 99.9 8.3E-22 2.8E-26 208.9 23.8 203 455-666 88-344 (368)
121 1l0q_A Surface layer protein; 99.9 2E-20 6.9E-25 202.1 31.8 214 455-687 33-255 (391)
122 3bws_A Protein LP49; two-domai 99.9 1.3E-20 4.5E-25 206.4 30.2 223 455-702 171-420 (433)
123 3vu4_A KMHSV2; beta-propeller 99.9 2.9E-20 1E-24 200.7 25.5 203 456-667 61-335 (355)
124 1l0q_A Surface layer protein; 99.9 1.3E-19 4.4E-24 195.7 30.3 210 467-701 3-218 (391)
125 3bws_A Protein LP49; two-domai 99.8 1.3E-19 4.4E-24 198.5 25.9 224 456-703 125-365 (433)
126 2w18_A PALB2, fancn, partner a 99.8 1.1E-18 3.8E-23 187.1 27.7 233 456-703 42-347 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 6E-18 2.1E-22 187.0 29.8 212 455-687 180-409 (415)
128 2ojh_A Uncharacterized protein 99.8 8.4E-18 2.9E-22 171.8 22.2 224 455-703 43-292 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 9.7E-17 3.3E-21 177.3 29.3 211 466-703 143-374 (415)
130 1ri6_A Putative isomerase YBHE 99.7 3.2E-16 1.1E-20 164.6 27.8 221 455-687 39-288 (343)
131 2oit_A Nucleoporin 214KDA; NH2 99.7 6.9E-17 2.4E-21 180.0 23.5 208 455-668 38-278 (434)
132 3vgz_A Uncharacterized protein 99.7 1.5E-15 5.2E-20 160.6 30.4 217 456-687 91-325 (353)
133 2ecf_A Dipeptidyl peptidase IV 99.7 2E-16 6.8E-21 186.2 22.9 225 455-703 38-357 (741)
134 3u4y_A Uncharacterized protein 99.7 1.5E-15 5E-20 160.0 26.6 215 456-687 43-284 (331)
135 1nir_A Nitrite reductase; hemo 99.7 9.7E-16 3.3E-20 175.7 27.2 193 461-668 145-355 (543)
136 3vgz_A Uncharacterized protein 99.7 2.1E-15 7.2E-20 159.5 26.9 226 455-688 42-284 (353)
137 3hfq_A Uncharacterized protein 99.7 2.4E-15 8.1E-20 160.1 26.3 239 455-702 41-305 (347)
138 3u4y_A Uncharacterized protein 99.7 7.8E-15 2.7E-19 154.4 29.2 213 461-688 5-233 (331)
139 1nir_A Nitrite reductase; hemo 99.7 2.6E-15 8.8E-20 172.1 26.8 231 456-701 181-439 (543)
140 2oit_A Nucleoporin 214KDA; NH2 99.7 4.4E-16 1.5E-20 173.4 19.3 160 455-626 94-279 (434)
141 2ojh_A Uncharacterized protein 99.7 1.8E-15 6E-20 154.5 22.0 208 471-702 17-236 (297)
142 1ri6_A Putative isomerase YBHE 99.7 6.8E-15 2.3E-19 154.4 24.8 207 467-688 6-243 (343)
143 3scy_A Hypothetical bacterial 99.7 4.8E-14 1.7E-18 151.0 30.2 228 455-687 51-317 (361)
144 1xfd_A DIP, dipeptidyl aminope 99.7 3.6E-15 1.2E-19 174.7 23.0 228 455-687 62-371 (723)
145 1pby_B Quinohemoprotein amine 99.7 8.4E-15 2.9E-19 153.3 23.4 194 456-668 36-310 (337)
146 1pby_B Quinohemoprotein amine 99.7 2E-14 6.7E-19 150.5 26.2 208 467-687 2-291 (337)
147 1xfd_A DIP, dipeptidyl aminope 99.7 5.4E-16 1.9E-20 181.7 15.2 216 456-688 19-318 (723)
148 3o4h_A Acylamino-acid-releasin 99.6 3.3E-15 1.1E-19 171.3 21.1 227 455-703 23-302 (582)
149 2z3z_A Dipeptidyl aminopeptida 99.6 6.9E-15 2.4E-19 172.2 22.9 223 455-687 83-367 (706)
150 1jmx_B Amine dehydrogenase; ox 99.6 1.4E-14 4.7E-19 152.7 21.6 215 459-687 5-306 (349)
151 2ecf_A Dipeptidyl peptidase IV 99.6 5.4E-15 1.9E-19 173.9 20.3 222 456-687 111-391 (741)
152 1jmx_B Amine dehydrogenase; ox 99.6 3E-14 1E-18 150.1 22.6 196 456-668 45-325 (349)
153 2z3z_A Dipeptidyl aminopeptida 99.6 1.7E-14 6E-19 168.7 22.0 218 456-688 123-413 (706)
154 1k32_A Tricorn protease; prote 99.6 1.8E-14 6.2E-19 177.1 23.1 220 456-702 247-491 (1045)
155 3hfq_A Uncharacterized protein 99.6 1.9E-13 6.6E-18 145.3 27.0 204 455-667 87-316 (347)
156 1z68_A Fibroblast activation p 99.5 4.6E-14 1.6E-18 165.7 17.5 214 458-688 20-324 (719)
157 1q7f_A NHL, brain tumor CG1071 99.5 3.9E-12 1.3E-16 131.5 29.8 225 455-700 31-268 (286)
158 1jof_A Carboxy-CIS,CIS-muconat 99.5 3E-13 1E-17 145.9 20.8 231 455-702 41-329 (365)
159 1k32_A Tricorn protease; prote 99.5 3E-13 1E-17 166.3 22.9 211 455-687 297-522 (1045)
160 4a5s_A Dipeptidyl peptidase 4 99.5 3.1E-13 1E-17 160.1 22.1 215 456-688 19-331 (740)
161 3fvz_A Peptidyl-glycine alpha- 99.5 3.9E-12 1.3E-16 135.4 28.1 237 455-703 25-312 (329)
162 3pe7_A Oligogalacturonate lyas 99.5 5.3E-13 1.8E-17 143.5 20.2 234 457-703 39-371 (388)
163 3scy_A Hypothetical bacterial 99.5 7.1E-12 2.4E-16 134.0 27.9 207 455-667 101-336 (361)
164 1z68_A Fibroblast activation p 99.5 1.6E-13 5.5E-18 161.0 15.4 223 456-687 62-367 (719)
165 2dg1_A DRP35, lactonase; beta 99.4 4.8E-11 1.7E-15 125.8 29.1 220 455-687 46-291 (333)
166 3o4h_A Acylamino-acid-releasin 99.4 3.8E-12 1.3E-16 145.8 20.5 185 456-668 112-315 (582)
167 1jof_A Carboxy-CIS,CIS-muconat 99.4 8.4E-12 2.9E-16 134.6 20.9 205 456-669 85-342 (365)
168 3e5z_A Putative gluconolactona 99.4 4.6E-11 1.6E-15 124.3 25.4 216 455-687 29-268 (296)
169 1q7f_A NHL, brain tumor CG1071 99.4 9.7E-11 3.3E-15 120.9 27.4 198 455-667 78-279 (286)
170 3c5m_A Oligogalacturonate lyas 99.4 7.9E-12 2.7E-16 134.1 17.5 217 459-702 86-370 (396)
171 4a5s_A Dipeptidyl peptidase 4 99.4 1.1E-11 3.6E-16 146.9 19.9 209 457-672 65-357 (740)
172 3fvz_A Peptidyl-glycine alpha- 99.4 3.1E-11 1E-15 128.5 20.5 210 455-669 92-323 (329)
173 3c5m_A Oligogalacturonate lyas 99.3 7.7E-12 2.6E-16 134.2 13.5 220 456-687 38-294 (396)
174 3azo_A Aminopeptidase; POP fam 99.3 5E-11 1.7E-15 138.2 21.1 230 455-702 25-313 (662)
175 1rwi_B Serine/threonine-protei 99.3 3.2E-10 1.1E-14 115.5 23.9 225 455-703 25-254 (270)
176 3azo_A Aminopeptidase; POP fam 99.3 5.4E-11 1.8E-15 138.0 20.1 208 458-681 81-341 (662)
177 3dsm_A Uncharacterized protein 99.3 9.7E-10 3.3E-14 117.0 27.7 222 456-700 46-285 (328)
178 2oiz_A Aromatic amine dehydrog 99.3 6.9E-10 2.4E-14 120.0 26.8 224 456-687 53-359 (361)
179 2xdw_A Prolyl endopeptidase; a 99.3 3.9E-10 1.3E-14 132.7 26.4 219 455-688 126-392 (710)
180 3no2_A Uncharacterized protein 99.3 7.5E-10 2.6E-14 115.5 24.0 209 465-701 4-231 (276)
181 2gop_A Trilobed protease; beta 99.2 1.8E-09 6.3E-14 114.0 24.6 200 455-685 60-311 (347)
182 2z2n_A Virginiamycin B lyase; 99.2 1.5E-08 5.3E-13 103.8 30.7 214 455-687 16-236 (299)
183 3dsm_A Uncharacterized protein 99.2 1.9E-09 6.5E-14 114.7 23.6 203 455-674 85-308 (328)
184 2dg1_A DRP35, lactonase; beta 99.2 8.6E-10 2.9E-14 116.2 20.6 214 455-687 7-244 (333)
185 1rwi_B Serine/threonine-protei 99.2 1.4E-09 4.8E-14 110.6 21.3 197 455-668 68-264 (270)
186 1xip_A Nucleoporin NUP159; bet 99.2 5E-10 1.7E-14 122.6 18.6 171 455-654 39-230 (388)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 9.4E-09 3.2E-13 106.8 27.1 222 455-687 19-279 (314)
188 3pe7_A Oligogalacturonate lyas 99.1 2.3E-09 8E-14 114.9 22.1 193 480-688 14-250 (388)
189 2z2n_A Virginiamycin B lyase; 99.1 5E-08 1.7E-12 100.0 30.1 221 455-701 58-284 (299)
190 3e5z_A Putative gluconolactona 99.1 9.2E-09 3.1E-13 106.8 24.2 199 455-674 70-292 (296)
191 3hrp_A Uncharacterized protein 99.1 2.6E-08 9E-13 109.7 29.2 228 455-703 132-400 (409)
192 2bkl_A Prolyl endopeptidase; m 99.1 2E-09 6.9E-14 126.4 20.8 215 455-688 122-375 (695)
193 1qks_A Cytochrome CD1 nitrite 99.1 1.7E-08 5.7E-13 116.1 27.5 191 465-669 166-374 (567)
194 2qc5_A Streptogramin B lactona 99.1 1.7E-07 5.9E-12 95.9 30.6 215 455-687 21-241 (300)
195 3g4e_A Regucalcin; six bladed 99.1 6.4E-08 2.2E-12 101.1 27.5 218 456-687 15-253 (297)
196 2oiz_A Aromatic amine dehydrog 99.1 2.1E-08 7.1E-13 108.4 24.3 186 455-650 109-360 (361)
197 1xip_A Nucleoporin NUP159; bet 99.0 6.4E-09 2.2E-13 113.8 19.1 171 500-687 39-225 (388)
198 2ghs_A AGR_C_1268P; regucalcin 99.0 1.6E-07 5.4E-12 99.7 29.4 216 456-687 51-283 (326)
199 2xdw_A Prolyl endopeptidase; a 99.0 1.5E-08 5.3E-13 119.0 23.5 179 496-687 122-347 (710)
200 2qc5_A Streptogramin B lactona 99.0 2.1E-07 7.1E-12 95.4 28.8 214 455-687 63-283 (300)
201 1qks_A Cytochrome CD1 nitrite 99.0 8.5E-08 2.9E-12 110.2 27.3 232 455-692 198-456 (567)
202 1yr2_A Prolyl oligopeptidase; 99.0 3.9E-08 1.3E-12 116.3 24.9 216 455-688 164-419 (741)
203 2gop_A Trilobed protease; beta 98.9 3.7E-08 1.2E-12 104.0 20.2 180 456-667 106-330 (347)
204 3no2_A Uncharacterized protein 98.9 1.8E-07 6.2E-12 97.3 24.3 187 456-656 39-231 (276)
205 3iuj_A Prolyl endopeptidase; h 98.9 3.9E-08 1.3E-12 115.5 21.6 217 455-688 130-383 (693)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 3.4E-07 1.2E-11 94.8 25.2 195 455-667 72-298 (314)
207 2bkl_A Prolyl endopeptidase; m 98.9 4E-08 1.4E-12 115.3 19.3 194 457-668 171-397 (695)
208 3dr2_A Exported gluconolactona 98.8 4.1E-07 1.4E-11 95.2 22.9 214 456-687 47-288 (305)
209 1a9n_A U2A', U2A'; complex (nu 98.8 2.9E-09 9.9E-14 103.0 5.4 100 100-203 19-118 (176)
210 2qe8_A Uncharacterized protein 98.8 6.6E-07 2.3E-11 95.5 22.6 233 455-703 18-311 (343)
211 1yr2_A Prolyl oligopeptidase; 98.7 5.3E-07 1.8E-11 106.6 22.4 195 457-668 212-441 (741)
212 2hz6_A Endoplasmic reticulum t 98.7 8.8E-09 3E-13 111.8 6.1 185 465-671 8-196 (369)
213 3g4e_A Regucalcin; six bladed 98.7 4.6E-06 1.6E-10 86.9 26.4 187 455-657 55-261 (297)
214 2mad_H Methylamine dehydrogena 98.7 3.4E-06 1.2E-10 91.6 26.3 199 455-668 126-350 (373)
215 2mad_H Methylamine dehydrogena 98.6 1.8E-05 6.2E-10 85.9 29.4 214 458-688 70-330 (373)
216 2qe8_A Uncharacterized protein 98.6 9.4E-07 3.2E-11 94.3 18.8 205 455-664 68-317 (343)
217 3hrp_A Uncharacterized protein 98.6 2.9E-06 1E-10 93.3 23.1 201 456-666 174-408 (409)
218 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.8E-10 83.5 24.4 195 456-667 23-236 (266)
219 2ghs_A AGR_C_1268P; regucalcin 98.6 1.9E-05 6.6E-10 83.5 26.7 184 455-658 91-292 (326)
220 1npe_A Nidogen, entactin; glyc 98.6 3.8E-05 1.3E-09 78.3 28.0 217 455-687 37-262 (267)
221 3sjl_D Methylamine dehydrogena 98.5 3.4E-06 1.2E-10 92.0 20.5 204 455-672 138-368 (386)
222 3c75_H MADH, methylamine dehyd 98.5 3.1E-06 1E-10 93.7 18.1 207 456-668 121-402 (426)
223 2ece_A 462AA long hypothetical 98.4 6.1E-06 2.1E-10 91.2 18.9 195 463-667 93-351 (462)
224 3dr2_A Exported gluconolactona 98.4 1.4E-05 4.6E-10 83.5 20.9 190 455-665 87-303 (305)
225 1yiq_A Quinohemoprotein alcoho 98.4 1E-05 3.5E-10 95.1 21.9 210 474-687 181-529 (689)
226 1kb0_A Quinohemoprotein alcoho 98.4 2E-05 6.8E-10 92.4 22.7 192 458-654 247-536 (677)
227 1kb0_A Quinohemoprotein alcoho 98.4 2.3E-05 7.8E-10 91.9 22.7 204 467-674 175-514 (677)
228 1ds9_A Outer arm dynein; leuci 98.3 1.2E-07 4E-12 93.4 1.5 137 126-365 49-192 (198)
229 1mda_H Methylamine dehydrogena 98.3 9.1E-06 3.1E-10 88.2 16.4 206 456-668 68-346 (368)
230 2fp8_A Strictosidine synthase; 98.3 0.00012 3.9E-09 77.0 24.5 205 455-671 20-272 (322)
231 3sjl_D Methylamine dehydrogena 98.3 4E-05 1.4E-09 83.6 21.2 195 461-669 40-257 (386)
232 1yiq_A Quinohemoprotein alcoho 98.3 1.8E-05 6.3E-10 92.9 19.6 192 458-654 239-534 (689)
233 2je0_A Acidic leucine-rich nuc 98.3 4.8E-07 1.6E-11 84.5 4.4 31 323-353 116-146 (149)
234 3nol_A Glutamine cyclotransfer 98.3 0.00025 8.4E-09 73.0 24.8 183 456-657 45-244 (262)
235 3iuj_A Prolyl endopeptidase; h 98.3 4.5E-05 1.6E-09 89.4 22.1 195 457-668 178-405 (693)
236 3qqz_A Putative uncharacterize 98.2 0.00031 1.1E-08 72.2 25.4 206 455-666 28-251 (255)
237 3c75_H MADH, methylamine dehyd 98.2 4.1E-05 1.4E-09 84.6 20.0 193 465-669 83-296 (426)
238 2ell_A Acidic leucine-rich nuc 98.2 4E-07 1.4E-11 86.8 3.3 102 100-203 24-125 (168)
239 2ece_A 462AA long hypothetical 98.2 0.00014 4.8E-09 80.3 21.9 191 455-656 139-399 (462)
240 2p4o_A Hypothetical protein; p 98.2 0.00076 2.6E-08 70.3 26.8 216 455-687 33-269 (306)
241 3nok_A Glutaminyl cyclase; bet 98.2 0.00021 7.3E-09 73.5 21.8 181 456-656 57-253 (268)
242 3mbr_X Glutamine cyclotransfer 98.1 0.00075 2.6E-08 68.7 25.2 183 455-656 22-222 (243)
243 2iwa_A Glutamine cyclotransfer 98.1 0.00025 8.5E-09 73.3 21.9 194 487-703 10-227 (266)
244 3nol_A Glutamine cyclotransfer 98.1 0.00024 8.4E-09 73.0 20.7 190 488-702 33-245 (262)
245 1fwx_A Nitrous oxide reductase 98.1 0.00011 3.7E-09 83.9 19.7 191 465-668 100-361 (595)
246 3nok_A Glutaminyl cyclase; bet 98.1 0.00042 1.4E-08 71.4 22.3 189 487-701 44-254 (268)
247 3e6j_A Variable lymphocyte rec 98.1 3.2E-06 1.1E-10 85.2 5.7 102 100-206 40-143 (229)
248 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.00048 1.7E-08 73.5 22.3 187 465-670 52-261 (376)
249 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.00023 7.7E-09 76.1 19.1 178 466-665 188-375 (376)
250 1mda_H Methylamine dehydrogena 98.0 0.00017 5.8E-09 78.2 17.9 98 477-581 47-158 (368)
251 3v65_B Low-density lipoprotein 98.0 0.0018 6.1E-08 70.3 26.0 202 455-670 117-321 (386)
252 3mbr_X Glutamine cyclotransfer 98.0 0.0015 5.3E-08 66.4 23.7 191 487-702 10-224 (243)
253 1ijq_A LDL receptor, low-densi 97.9 0.0045 1.5E-07 65.0 28.0 203 455-670 31-241 (316)
254 3v64_C Agrin; beta propeller, 97.9 0.0032 1.1E-07 67.3 26.7 202 455-670 74-278 (349)
255 2hz6_A Endoplasmic reticulum t 97.9 1.3E-06 4.3E-11 94.7 -0.3 142 510-670 8-152 (369)
256 1npe_A Nidogen, entactin; glyc 97.9 0.0022 7.6E-08 65.0 24.1 180 455-650 80-263 (267)
257 4ezg_A Putative uncharacterize 97.9 5.6E-06 1.9E-10 81.1 3.6 101 101-208 45-146 (197)
258 1a9n_A U2A', U2A'; complex (nu 97.9 6.7E-06 2.3E-10 79.1 4.0 130 69-208 17-150 (176)
259 1kv9_A Type II quinohemoprotei 97.9 0.00092 3.1E-08 78.1 22.8 194 458-656 234-520 (668)
260 1xeu_A Internalin C; cellular 97.9 6E-06 2E-10 85.1 3.5 103 100-213 85-187 (263)
261 1fwx_A Nitrous oxide reductase 97.9 0.00068 2.3E-08 77.3 20.7 208 456-671 136-434 (595)
262 2wfh_A SLIT homolog 2 protein 97.8 4.9E-06 1.7E-10 81.7 2.4 103 100-207 31-135 (193)
263 3hxj_A Pyrrolo-quinoline quino 97.8 0.00052 1.8E-08 71.1 17.8 196 466-687 107-306 (330)
264 3p5b_L Low density lipoprotein 97.8 0.01 3.5E-07 64.6 28.9 203 455-670 113-323 (400)
265 1dce_A Protein (RAB geranylger 97.8 4.4E-06 1.5E-10 96.0 1.9 89 111-207 429-517 (567)
266 2ell_A Acidic leucine-rich nuc 97.8 1.1E-05 3.7E-10 76.7 3.9 105 100-208 49-157 (168)
267 1h6t_A Internalin B; cell adhe 97.8 1.6E-05 5.3E-10 83.2 5.4 102 100-211 112-213 (291)
268 4ezg_A Putative uncharacterize 97.8 7.2E-06 2.5E-10 80.3 2.2 99 100-205 88-188 (197)
269 2r9u_A Variable lymphocyte rec 97.7 8.2E-06 2.8E-10 78.7 2.3 98 103-207 15-114 (174)
270 3rw6_A Nuclear RNA export fact 97.7 1.6E-05 5.5E-10 82.3 4.7 93 99-203 126-225 (267)
271 2o6s_A Variable lymphocyte rec 97.7 7.2E-06 2.5E-10 80.8 1.9 78 127-207 54-133 (208)
272 3g39_A Variable lymphocyte rec 97.7 9E-06 3.1E-10 78.0 2.2 77 127-206 32-110 (170)
273 2v9t_B SLIT homolog 2 protein 97.7 6.6E-06 2.3E-10 82.4 1.3 104 100-207 32-137 (220)
274 3m19_A Variable lymphocyte rec 97.7 8.5E-06 2.9E-10 83.0 2.1 77 128-207 86-164 (251)
275 2o6s_A Variable lymphocyte rec 97.7 9E-06 3.1E-10 80.1 2.0 105 100-208 52-158 (208)
276 1h6t_A Internalin B; cell adhe 97.7 1.8E-05 6.2E-10 82.7 4.4 74 128-208 93-166 (291)
277 1m9s_A Internalin B; cell inva 97.7 2.2E-05 7.4E-10 90.9 5.3 104 100-213 109-212 (605)
278 4hw6_A Hypothetical protein, I 97.7 0.0085 2.9E-07 66.1 26.0 201 455-668 140-374 (433)
279 1k3i_A Galactose oxidase precu 97.7 0.0009 3.1E-08 77.8 18.8 231 457-703 246-531 (656)
280 3m19_A Variable lymphocyte rec 97.7 1E-05 3.5E-10 82.3 2.1 106 99-208 34-141 (251)
281 2ca6_A RAN GTPase-activating p 97.7 8.5E-05 2.9E-09 80.3 9.4 135 70-208 93-254 (386)
282 1kv9_A Type II quinohemoprotei 97.7 0.0011 3.8E-08 77.4 19.5 196 475-674 177-495 (668)
283 2o6q_A Variable lymphocyte rec 97.7 1.1E-05 3.9E-10 82.9 2.2 105 100-208 61-167 (270)
284 2o6r_A Variable lymphocyte rec 97.7 1.1E-05 3.7E-10 77.5 1.7 105 100-208 28-134 (177)
285 1h6u_A Internalin H; cell adhe 97.7 2.1E-05 7.3E-10 82.8 4.1 99 100-208 63-161 (308)
286 1w8a_A SLIT protein; signaling 97.7 7.4E-06 2.5E-10 80.1 0.4 98 103-207 11-111 (192)
287 1w8a_A SLIT protein; signaling 97.6 7.6E-06 2.6E-10 80.1 0.3 105 100-207 29-135 (192)
288 1ijq_A LDL receptor, low-densi 97.6 0.031 1.1E-06 58.6 28.4 186 475-670 9-197 (316)
289 2je0_A Acidic leucine-rich nuc 97.6 1.7E-05 5.8E-10 73.7 2.6 108 100-209 17-124 (149)
290 2fp8_A Strictosidine synthase; 97.6 0.0065 2.2E-07 63.4 22.8 196 455-667 81-312 (322)
291 1h6u_A Internalin H; cell adhe 97.6 3.1E-05 1.1E-09 81.5 4.7 121 71-208 63-183 (308)
292 1p9a_G Platelet glycoprotein I 97.6 1.3E-05 4.4E-10 83.8 1.7 103 100-207 77-181 (290)
293 3tc9_A Hypothetical hydrolase; 97.6 0.0091 3.1E-07 65.8 24.7 157 455-625 138-301 (430)
294 2v9t_B SLIT homolog 2 protein 97.6 1.5E-05 5E-10 79.8 1.9 101 100-207 56-161 (220)
295 1flg_A Protein (quinoprotein e 97.6 0.0024 8.2E-08 73.4 20.6 194 458-656 250-548 (582)
296 3rfs_A Internalin B, repeat mo 97.6 1.5E-05 5.1E-10 82.2 2.0 78 128-208 88-167 (272)
297 2v70_A SLIT-2, SLIT homolog 2 97.6 1.1E-05 3.6E-10 80.9 0.6 76 128-206 60-137 (220)
298 1xeu_A Internalin C; cellular 97.6 3.1E-05 1.1E-09 79.7 4.0 98 100-208 63-160 (263)
299 2wfh_A SLIT homolog 2 protein 97.6 2.1E-05 7.2E-10 77.1 2.3 79 126-207 32-111 (193)
300 3sov_A LRP-6, low-density lipo 97.6 0.019 6.5E-07 60.5 25.4 201 456-670 37-241 (318)
301 3rfs_A Internalin B, repeat mo 97.6 3.2E-05 1.1E-09 79.7 3.7 79 127-208 65-143 (272)
302 4fmz_A Internalin; leucine ric 97.5 3.8E-05 1.3E-09 81.6 4.0 103 99-209 220-322 (347)
303 3v64_C Agrin; beta propeller, 97.5 0.022 7.5E-07 60.7 25.8 197 457-670 37-236 (349)
304 2ad6_A Methanol dehydrogenase 97.5 0.004 1.4E-07 71.3 21.1 190 459-654 240-523 (571)
305 2v70_A SLIT-2, SLIT homolog 2 97.5 2.2E-05 7.5E-10 78.5 1.8 104 100-207 57-162 (220)
306 2o6q_A Variable lymphocyte rec 97.5 2.4E-05 8.3E-10 80.4 2.1 105 100-208 85-191 (270)
307 3goz_A Leucine-rich repeat-con 97.5 0.00017 5.8E-09 77.5 8.6 161 46-208 56-235 (362)
308 3e6j_A Variable lymphocyte rec 97.5 2.7E-05 9.2E-10 78.3 2.1 126 71-206 40-167 (229)
309 1m9s_A Internalin B; cell inva 97.5 4.3E-05 1.5E-09 88.4 4.0 73 128-207 90-162 (605)
310 3hxj_A Pyrrolo-quinoline quino 97.5 0.0019 6.3E-08 66.9 16.2 184 457-668 140-324 (330)
311 4glp_A Monocyte differentiatio 97.5 2.9E-05 9.8E-10 81.6 2.2 99 85-184 75-181 (310)
312 2xot_A Amphoterin-induced prot 97.5 2E-05 6.9E-10 84.8 0.8 105 100-208 39-146 (361)
313 3o53_A Protein LRIM1, AGAP0063 97.5 2.6E-05 9E-10 82.2 1.7 102 100-206 144-245 (317)
314 2p4o_A Hypothetical protein; p 97.5 0.014 4.9E-07 60.5 22.6 196 455-659 73-279 (306)
315 2xe4_A Oligopeptidase B; hydro 97.5 0.005 1.7E-07 72.8 21.2 194 455-666 175-398 (751)
316 1wwl_A Monocyte differentiatio 97.5 6.1E-05 2.1E-09 79.2 4.2 100 99-206 200-304 (312)
317 3qqz_A Putative uncharacterize 97.4 0.022 7.5E-07 58.3 23.1 183 496-687 24-235 (255)
318 3zyj_A Leucine-rich repeat-con 97.4 3.2E-05 1.1E-09 85.5 1.3 53 128-181 115-169 (440)
319 1z7x_W Ribonuclease inhibitor; 97.4 0.00016 5.4E-09 79.7 6.8 133 72-208 29-180 (461)
320 3v65_B Low-density lipoprotein 97.4 0.028 9.7E-07 60.7 24.5 189 467-670 88-279 (386)
321 1ozn_A Reticulon 4 receptor; N 97.4 4.3E-05 1.5E-09 79.0 1.8 76 128-206 108-185 (285)
322 3un9_A NLR family member X1; l 97.4 8.8E-05 3E-09 80.5 4.2 133 72-208 73-221 (372)
323 4glp_A Monocyte differentiatio 97.4 3.1E-05 1.1E-09 81.3 0.6 144 61-208 81-234 (310)
324 3goz_A Leucine-rich repeat-con 97.3 0.00032 1.1E-08 75.3 8.3 84 101-185 52-151 (362)
325 1w6s_A Methanol dehydrogenase 97.3 0.0091 3.1E-07 68.8 20.8 193 459-656 246-535 (599)
326 2ast_B S-phase kinase-associat 97.3 0.00017 5.9E-09 75.9 5.9 109 99-209 141-258 (336)
327 3zyj_A Leucine-rich repeat-con 97.3 3.9E-05 1.3E-09 84.7 0.9 80 126-208 186-265 (440)
328 2xwt_C Thyrotropin receptor; s 97.3 2.4E-05 8.3E-10 78.8 -0.7 104 100-208 31-140 (239)
329 2o6r_A Variable lymphocyte rec 97.3 6.4E-05 2.2E-09 72.0 2.2 80 126-208 29-110 (177)
330 2z66_A Variable lymphocyte rec 97.3 3.7E-05 1.3E-09 80.2 0.5 105 100-208 126-233 (306)
331 2ad6_A Methanol dehydrogenase 97.3 0.0057 1.9E-07 70.0 18.7 203 467-674 161-501 (571)
332 4g8a_A TOLL-like receptor 4; l 97.3 5.8E-05 2E-09 86.3 2.1 100 101-207 53-157 (635)
333 1ozn_A Reticulon 4 receptor; N 97.3 7.3E-05 2.5E-09 77.2 2.6 105 100-208 105-211 (285)
334 2z80_A TOLL-like receptor 2, v 97.3 4.1E-05 1.4E-09 81.8 0.7 106 100-208 52-159 (353)
335 2ca6_A RAN GTPase-activating p 97.3 0.00016 5.6E-09 78.1 5.4 153 50-208 13-197 (386)
336 3p5b_L Low density lipoprotein 97.3 0.12 4E-06 56.2 28.2 193 467-670 84-279 (400)
337 3zyi_A Leucine-rich repeat-con 97.3 5E-05 1.7E-09 84.2 1.2 105 100-208 99-206 (452)
338 1ds9_A Outer arm dynein; leuci 97.3 1.6E-05 5.5E-10 77.9 -2.7 77 128-208 73-150 (198)
339 3amr_A 3-phytase; beta-propell 97.3 0.034 1.2E-06 59.4 22.7 194 465-667 39-262 (355)
340 1p9a_G Platelet glycoprotein I 97.3 5.4E-05 1.8E-09 79.1 1.1 102 100-207 55-157 (290)
341 4a2l_A BT_4663, two-component 97.3 0.091 3.1E-06 62.1 29.1 216 455-687 358-597 (795)
342 4fmz_A Internalin; leucine ric 97.3 0.00014 4.8E-09 77.1 4.1 100 99-208 176-275 (347)
343 3m0c_C LDL receptor, low-densi 97.3 0.073 2.5E-06 63.2 27.8 198 455-666 425-630 (791)
344 2z62_A TOLL-like receptor 4, v 97.2 6.4E-05 2.2E-09 77.3 1.3 76 128-206 55-132 (276)
345 1flg_A Protein (quinoprotein e 97.2 0.0099 3.4E-07 68.2 19.4 151 521-674 291-523 (582)
346 3zyi_A Leucine-rich repeat-con 97.2 7.3E-05 2.5E-09 82.8 1.4 79 127-208 198-276 (452)
347 3o6n_A APL1; leucine-rich repe 97.2 8.4E-05 2.9E-09 80.4 1.6 129 68-208 42-175 (390)
348 2z80_A TOLL-like receptor 2, v 97.2 8.5E-05 2.9E-09 79.3 1.6 54 128-182 103-159 (353)
349 4a2l_A BT_4663, two-component 97.2 0.19 6.6E-06 59.2 30.7 221 455-687 264-509 (795)
350 3o6n_A APL1; leucine-rich repe 97.2 0.00016 5.4E-09 78.2 3.3 102 100-208 45-151 (390)
351 1dce_A Protein (RAB geranylger 97.2 0.00014 4.9E-09 83.4 3.0 105 100-211 441-546 (567)
352 2z62_A TOLL-like receptor 4, v 97.1 0.0001 3.5E-09 75.7 1.4 80 126-208 29-110 (276)
353 1wwl_A Monocyte differentiatio 97.1 7.9E-05 2.7E-09 78.4 0.5 108 100-208 95-211 (312)
354 3un9_A NLR family member X1; l 97.1 0.00088 3E-08 72.6 8.6 133 71-208 101-249 (372)
355 4fcg_A Uncharacterized protein 97.1 7.3E-05 2.5E-09 79.4 -0.1 130 68-208 78-216 (328)
356 2id5_A Lingo-1, leucine rich r 97.1 0.00015 5.2E-09 80.6 2.4 77 128-207 107-185 (477)
357 1o6v_A Internalin A; bacterial 97.1 0.00021 7.2E-09 79.4 3.5 98 100-207 68-165 (466)
358 2z66_A Variable lymphocyte rec 97.1 0.00014 4.8E-09 75.8 1.8 107 99-208 100-209 (306)
359 2xwt_C Thyrotropin receptor; s 97.1 0.0001 3.6E-09 74.0 0.8 81 126-208 32-115 (239)
360 3oja_A Leucine-rich immune mol 97.1 0.00016 5.4E-09 81.3 2.2 102 100-206 144-245 (487)
361 4g8a_A TOLL-like receptor 4; l 97.1 0.0001 3.6E-09 84.2 0.6 104 100-206 469-575 (635)
362 4a0p_A LRP6, LRP-6, low-densit 97.0 0.18 6E-06 58.3 27.6 196 455-666 38-235 (628)
363 2p9w_A MAL S 1 allergenic prot 97.0 0.077 2.6E-06 56.2 22.4 211 454-668 13-265 (334)
364 2r9u_A Variable lymphocyte rec 97.0 0.00028 9.7E-09 67.8 3.2 87 100-188 33-121 (174)
365 3v47_A TOLL-like receptor 5B a 97.0 0.00015 5E-09 79.9 1.2 103 100-208 54-164 (455)
366 3sov_A LRP-6, low-density lipo 97.0 0.096 3.3E-06 55.1 22.9 183 475-670 12-199 (318)
367 2xot_A Amphoterin-induced prot 97.0 0.00018 6.2E-09 77.3 1.8 79 127-208 41-122 (361)
368 3v47_A TOLL-like receptor 5B a 97.0 0.00036 1.2E-08 76.7 4.2 79 127-208 277-357 (455)
369 3o53_A Protein LRIM1, AGAP0063 97.0 0.00035 1.2E-08 73.5 3.9 96 101-207 11-108 (317)
370 1z7x_W Ribonuclease inhibitor; 97.0 0.0006 2.1E-08 75.0 5.9 85 100-185 199-297 (461)
371 3oja_B Anopheles plasmodium-re 96.9 0.00021 7.1E-09 82.2 1.7 129 68-208 48-181 (597)
372 2id5_A Lingo-1, leucine rich r 96.9 0.00013 4.3E-09 81.2 -0.2 80 126-208 225-306 (477)
373 4b8c_D Glucose-repressible alc 96.9 0.00022 7.4E-09 84.3 1.8 76 128-208 227-303 (727)
374 3g39_A Variable lymphocyte rec 96.9 0.00026 8.9E-09 67.7 2.0 76 128-207 12-87 (170)
375 3tc9_A Hypothetical hydrolase; 96.9 0.018 6.1E-07 63.4 16.8 156 500-668 138-301 (430)
376 2ft3_A Biglycan; proteoglycan, 96.9 0.00024 8.1E-09 75.2 1.3 78 127-208 174-251 (332)
377 3vq2_A TLR4, TOLL-like recepto 96.9 0.00022 7.4E-09 81.7 1.0 77 128-207 59-137 (606)
378 1xku_A Decorin; proteoglycan, 96.9 0.00031 1.1E-08 74.0 2.1 103 100-208 76-181 (330)
379 1w6s_A Methanol dehydrogenase 96.8 0.052 1.8E-06 62.4 20.8 196 466-670 62-345 (599)
380 3bz5_A Internalin-J, INLJ; leu 96.8 0.00025 8.7E-09 78.9 1.3 94 100-208 64-158 (457)
381 3kya_A Putative phosphatase; s 96.8 0.11 3.6E-06 58.3 22.5 209 455-668 140-410 (496)
382 2z7x_B TOLL-like receptor 1, v 96.8 0.00016 5.6E-09 81.2 -0.4 100 100-208 21-125 (520)
383 3m0c_C LDL receptor, low-densi 96.8 0.34 1.1E-05 57.5 28.0 187 474-670 402-591 (791)
384 3bz5_A Internalin-J, INLJ; leu 96.8 0.00048 1.6E-08 76.7 3.4 96 100-208 42-137 (457)
385 2z63_A TOLL-like receptor 4, v 96.8 0.00028 9.4E-09 79.9 1.4 105 100-207 52-158 (570)
386 1o6v_A Internalin A; bacterial 96.8 0.00052 1.8E-08 76.2 3.4 99 101-209 47-145 (466)
387 1n7d_A LDL receptor, low-densi 96.8 0.0017 5.8E-08 76.3 7.9 200 455-667 407-613 (699)
388 1k3i_A Galactose oxidase precu 96.8 0.011 3.7E-07 68.7 14.6 227 458-703 190-476 (656)
389 2xe4_A Oligopeptidase B; hydro 96.8 0.071 2.4E-06 62.9 21.8 156 500-667 175-353 (751)
390 4fcg_A Uncharacterized protein 96.8 0.00032 1.1E-08 74.4 1.4 105 100-208 150-263 (328)
391 3v9f_A Two-component system se 96.7 0.43 1.5E-05 56.1 27.8 201 455-670 408-613 (781)
392 2ism_A Putative oxidoreductase 96.7 0.33 1.1E-05 51.6 24.4 230 455-703 32-335 (352)
393 1xku_A Decorin; proteoglycan, 96.7 0.00045 1.5E-08 72.8 1.8 105 100-208 145-250 (330)
394 3oja_B Anopheles plasmodium-re 96.7 0.00058 2E-08 78.5 2.8 102 100-208 99-202 (597)
395 2ast_B S-phase kinase-associat 96.7 0.0018 6.1E-08 68.0 6.4 134 70-208 141-282 (336)
396 2z7x_B TOLL-like receptor 1, v 96.7 0.00063 2.1E-08 76.3 3.0 56 147-206 421-476 (520)
397 2p9w_A MAL S 1 allergenic prot 96.7 0.078 2.7E-06 56.2 18.8 165 500-667 14-214 (334)
398 2ft3_A Biglycan; proteoglycan, 96.7 0.00056 1.9E-08 72.2 2.3 76 128-206 105-180 (332)
399 2z81_A CD282 antigen, TOLL-lik 96.7 0.00067 2.3E-08 76.5 3.0 103 100-208 26-133 (549)
400 3oja_A Leucine-rich immune mol 96.6 0.0008 2.7E-08 75.5 3.5 99 100-208 80-179 (487)
401 4b8c_D Glucose-repressible alc 96.6 0.00048 1.6E-08 81.3 1.7 100 100-206 224-324 (727)
402 2z81_A CD282 antigen, TOLL-lik 96.6 0.00029 1E-08 79.5 -0.1 105 100-208 50-158 (549)
403 1ziw_A TOLL-like receptor 3; i 96.6 0.00053 1.8E-08 79.7 2.1 65 143-208 476-546 (680)
404 1io0_A Tropomodulin; LRR prote 96.6 0.0019 6.5E-08 62.6 5.5 108 98-206 34-159 (185)
405 3vq2_A TLR4, TOLL-like recepto 96.6 0.0005 1.7E-08 78.7 1.5 105 100-208 424-531 (606)
406 4ecn_A Leucine-rich repeat pro 96.6 0.00086 2.9E-08 80.6 3.5 103 100-208 515-629 (876)
407 3t6q_A CD180 antigen; protein- 96.6 0.00046 1.6E-08 79.0 1.0 56 128-184 281-337 (606)
408 4a0p_A LRP6, LRP-6, low-densit 96.6 0.66 2.2E-05 53.5 27.5 189 467-669 7-198 (628)
409 1ogq_A PGIP-2, polygalacturona 96.6 0.00064 2.2E-08 71.4 1.9 103 100-207 149-253 (313)
410 2z63_A TOLL-like receptor 4, v 96.5 0.00065 2.2E-08 76.8 2.0 105 100-208 28-134 (570)
411 3v9f_A Two-component system se 96.5 0.16 5.5E-06 59.8 22.7 216 455-687 364-594 (781)
412 3j0a_A TOLL-like receptor 5; m 96.5 0.00046 1.6E-08 82.7 0.4 103 100-208 48-158 (844)
413 3e4g_A ATP synthase subunit S, 96.5 0.00098 3.4E-08 64.5 2.6 85 123-209 59-150 (176)
414 3rw6_A Nuclear RNA export fact 96.5 0.0014 4.9E-08 67.6 4.0 78 126-205 171-258 (267)
415 3t6q_A CD180 antigen; protein- 96.5 0.0019 6.6E-08 73.7 5.4 79 126-208 255-335 (606)
416 1ogq_A PGIP-2, polygalacturona 96.5 0.001 3.5E-08 69.9 2.7 106 100-210 125-233 (313)
417 3a79_B TLR6, VLRB.59, TOLL-lik 96.4 0.00072 2.5E-08 76.9 1.5 57 147-207 450-506 (562)
418 1ziw_A TOLL-like receptor 3; i 96.4 0.0012 4E-08 76.7 3.3 77 128-207 76-154 (680)
419 4ay9_X Follicle-stimulating ho 96.4 0.00065 2.2E-08 72.6 1.0 75 127-203 156-231 (350)
420 3a79_B TLR6, VLRB.59, TOLL-lik 96.4 0.00089 3E-08 76.1 2.1 102 100-207 52-155 (562)
421 3s94_A LRP-6, low-density lipo 96.4 0.29 1E-05 56.4 23.2 198 455-667 41-242 (619)
422 3a9g_A Putative uncharacterize 96.4 0.89 3E-05 48.3 25.4 231 455-701 30-330 (354)
423 2ifg_A High affinity nerve gro 96.3 0.00092 3.1E-08 71.0 1.2 76 127-206 33-111 (347)
424 4ecn_A Leucine-rich repeat pro 96.3 0.0026 8.8E-08 76.5 4.8 103 101-208 674-786 (876)
425 3rgz_A Protein brassinosteroid 96.2 0.0028 9.7E-08 75.0 5.0 79 127-209 180-258 (768)
426 3s94_A LRP-6, low-density lipo 96.2 1.1 3.7E-05 51.6 26.4 198 455-667 350-550 (619)
427 3sre_A PON1, serum paraoxonase 96.2 0.58 2E-05 50.0 22.5 190 457-658 53-287 (355)
428 2xbg_A YCF48-like protein; pho 96.2 1.5 5.3E-05 45.6 27.8 215 455-687 37-261 (327)
429 2xbg_A YCF48-like protein; pho 96.2 1.2 4E-05 46.5 24.5 218 455-702 81-312 (327)
430 3cvr_A Invasion plasmid antige 96.1 0.0039 1.3E-07 71.4 5.1 53 127-186 82-134 (571)
431 2ifg_A High affinity nerve gro 96.1 0.0018 6.1E-08 68.7 2.2 76 130-207 13-89 (347)
432 4eco_A Uncharacterized protein 96.1 0.0017 5.7E-08 75.4 2.1 103 100-208 273-387 (636)
433 4hw6_A Hypothetical protein, I 96.0 0.12 3.9E-06 56.9 16.5 155 499-667 139-303 (433)
434 3j0a_A TOLL-like receptor 5; m 96.0 0.0016 5.3E-08 78.1 1.1 110 98-209 22-134 (844)
435 3g06_A SSPH2 (leucine-rich rep 95.9 0.0034 1.2E-07 72.6 3.8 72 127-208 223-294 (622)
436 2g8s_A Glucose/sorbosone dehyd 95.9 0.94 3.2E-05 48.0 22.5 232 455-700 19-340 (353)
437 1jl5_A Outer protein YOPM; leu 95.9 0.0033 1.1E-07 69.8 3.2 95 100-208 111-205 (454)
438 1jl5_A Outer protein YOPM; leu 95.7 0.004 1.4E-07 69.1 3.1 79 100-186 131-209 (454)
439 3kya_A Putative phosphatase; s 95.7 0.16 5.4E-06 56.9 15.9 160 500-667 140-340 (496)
440 4eco_A Uncharacterized protein 95.7 0.0036 1.2E-07 72.5 2.6 82 102-185 379-470 (636)
441 1n7d_A LDL receptor, low-densi 95.6 0.023 7.7E-07 66.7 8.8 185 475-669 385-572 (699)
442 3g06_A SSPH2 (leucine-rich rep 95.4 0.0037 1.3E-07 72.4 1.4 76 100-187 81-156 (622)
443 2p1m_B Transport inhibitor res 95.4 0.013 4.5E-07 66.3 6.0 61 146-208 455-516 (594)
444 2vpj_A Kelch-like protein 12; 95.4 0.53 1.8E-05 48.0 17.6 190 465-670 62-280 (301)
445 3ogk_B Coronatine-insensitive 95.3 0.023 7.7E-07 64.4 7.2 129 72-207 113-252 (592)
446 2xn4_A Kelch-like protein 2; s 95.2 0.57 1.9E-05 47.8 17.3 188 465-669 61-277 (302)
447 3ei3_A DNA damage-binding prot 95.2 1.7 5.9E-05 53.7 24.1 190 459-664 837-1058(1158)
448 3rgz_A Protein brassinosteroid 95.2 0.0056 1.9E-07 72.5 1.9 106 100-208 343-452 (768)
449 4ay9_X Follicle-stimulating ho 95.2 0.0044 1.5E-07 66.0 0.8 80 127-208 32-114 (350)
450 3sb4_A Hypothetical leucine ri 95.1 0.0061 2.1E-07 64.3 1.7 109 90-205 216-328 (329)
451 1io0_A Tropomodulin; LRR prote 94.9 0.018 6.3E-07 55.5 4.5 127 70-200 35-179 (185)
452 3amr_A 3-phytase; beta-propell 94.9 2 7E-05 45.7 20.4 155 475-633 98-272 (355)
453 3cvr_A Invasion plasmid antige 94.9 0.017 5.7E-07 66.2 4.6 55 127-185 182-243 (571)
454 3pbp_A Nucleoporin NUP82; beta 94.7 1 3.5E-05 49.2 17.8 144 509-663 30-207 (452)
455 3ii7_A Kelch-like protein 7; p 94.6 1.3 4.4E-05 45.2 18.0 188 465-669 55-273 (306)
456 2p1m_B Transport inhibitor res 94.6 0.03 1E-06 63.4 5.9 126 72-206 106-243 (594)
457 3pbp_A Nucleoporin NUP82; beta 94.4 2.5 8.6E-05 46.1 19.9 151 465-620 31-207 (452)
458 2vpj_A Kelch-like protein 12; 94.1 1.8 6E-05 44.0 17.7 189 465-669 14-232 (301)
459 2xzh_A Clathrin heavy chain 1; 93.7 8.1 0.00028 40.8 27.7 196 459-668 72-290 (365)
460 1cru_A Protein (soluble quinop 93.5 3.6 0.00012 45.2 19.8 112 455-570 28-163 (454)
461 3ii7_A Kelch-like protein 7; p 93.4 2.6 9E-05 42.8 17.4 187 466-669 12-226 (306)
462 3a9g_A Putative uncharacterize 93.3 1.9 6.5E-05 45.7 16.6 147 499-655 29-215 (354)
463 2ra8_A Uncharacterized protein 93.2 0.075 2.6E-06 57.1 5.4 59 145-205 217-286 (362)
464 3sre_A PON1, serum paraoxonase 93.1 10 0.00035 40.2 22.8 168 519-700 81-284 (355)
465 2be1_A Serine/threonine-protei 93.0 0.53 1.8E-05 50.0 11.5 154 466-626 10-184 (339)
466 3das_A Putative oxidoreductase 93.0 11 0.00036 40.0 27.5 238 455-703 33-328 (347)
467 3ogk_B Coronatine-insensitive 93.0 0.06 2.1E-06 60.9 4.5 108 100-208 378-498 (592)
468 1zgk_A Kelch-like ECH-associat 93.0 1.8 6.2E-05 44.3 15.5 187 465-669 70-288 (308)
469 2xn4_A Kelch-like protein 2; s 92.9 2.7 9.3E-05 42.6 16.6 187 466-669 16-230 (302)
470 4asc_A Kelch repeat and BTB do 92.7 2.1 7E-05 44.0 15.4 189 465-669 45-278 (315)
471 2ra8_A Uncharacterized protein 92.6 0.054 1.8E-06 58.3 3.1 109 99-208 192-317 (362)
472 1bpo_A Protein (clathrin); cla 92.2 16 0.00055 40.1 27.4 197 458-668 70-289 (494)
473 2ism_A Putative oxidoreductase 92.0 1.2 4.2E-05 47.0 13.0 148 499-656 31-221 (352)
474 4asc_A Kelch repeat and BTB do 92.0 6.1 0.00021 40.3 18.0 183 468-669 7-222 (315)
475 2zwa_A Leucine carboxyl methyl 92.0 5.1 0.00018 46.5 19.3 197 465-670 397-637 (695)
476 1cru_A Protein (soluble quinop 91.7 7.3 0.00025 42.8 19.2 165 499-667 27-258 (454)
477 1zgk_A Kelch-like ECH-associat 91.4 2.9 0.0001 42.7 14.8 188 465-669 24-241 (308)
478 1tl2_A L10, protein (tachylect 91.0 4.6 0.00016 40.2 14.7 182 466-661 4-203 (236)
479 3das_A Putative oxidoreductase 90.8 6.7 0.00023 41.6 17.0 152 498-655 31-219 (347)
480 3ei3_A DNA damage-binding prot 90.7 32 0.0011 42.4 25.3 189 455-656 555-755 (1158)
481 3sb4_A Hypothetical leucine ri 90.7 0.068 2.3E-06 56.1 1.3 75 126-205 227-304 (329)
482 2woz_A Kelch repeat and BTB do 90.6 6.4 0.00022 40.2 16.4 189 465-669 56-288 (318)
483 3rfe_A Platelet glycoprotein I 89.7 0.18 6.2E-06 45.8 3.1 54 129-184 12-67 (130)
484 2g8s_A Glucose/sorbosone dehyd 89.6 8.9 0.00031 40.3 16.9 150 499-654 18-214 (353)
485 3e4g_A ATP synthase subunit S, 89.6 0.16 5.4E-06 48.9 2.7 60 147-209 61-125 (176)
486 2woz_A Kelch repeat and BTB do 89.3 9.3 0.00032 38.9 16.4 185 467-669 17-232 (318)
487 2xzh_A Clathrin heavy chain 1; 88.8 22 0.00076 37.5 18.4 166 455-626 153-333 (365)
488 2uvk_A YJHT; unknown function, 87.3 9.4 0.00032 39.5 15.1 52 617-669 286-343 (357)
489 1bpo_A Protein (clathrin); cla 87.1 39 0.0013 37.0 19.8 166 455-626 152-332 (494)
490 1xi4_A Clathrin heavy chain; a 87.0 13 0.00044 46.6 17.5 196 459-668 71-289 (1630)
491 1tl2_A L10, protein (tachylect 86.3 16 0.00054 36.4 14.8 154 455-624 42-207 (236)
492 2zwa_A Leucine carboxyl methyl 84.3 7.5 0.00026 45.1 13.5 157 465-629 451-639 (695)
493 4fdw_A Leucine rich hypothetic 82.0 0.3 1E-05 53.0 0.4 99 99-206 134-234 (401)
494 2uvk_A YJHT; unknown function, 81.2 18 0.0006 37.4 13.8 59 573-635 286-352 (357)
495 3s25_A Hypothetical 7-bladed b 80.7 54 0.0018 33.6 21.0 189 465-688 24-235 (302)
496 1sqj_A OXG-RCBH, oligoxylogluc 75.2 1.3E+02 0.0045 35.1 23.2 159 455-615 16-190 (789)
497 2be1_A Serine/threonine-protei 71.1 5.1 0.00017 42.4 6.1 111 562-674 10-137 (339)
498 1xi4_A Clathrin heavy chain; a 70.2 44 0.0015 42.0 14.5 133 475-627 47-190 (1630)
499 3s25_A Hypothetical 7-bladed b 69.9 1E+02 0.0035 31.5 18.8 176 461-670 60-257 (302)
500 3b7f_A Glycosyl hydrolase, BNR 69.7 1.1E+02 0.0038 31.9 20.5 219 455-683 116-390 (394)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-30 Score=273.51 Aligned_cols=227 Identities=19% Similarity=0.283 Sum_probs=193.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||+|++||+.++..+..+. +|..+|.+++|+ +++++|++|+.|++|++||+.+++..
T Consensus 15 ~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 15 RVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEe-CCCCEEEEECCCCEEEEEECCCCcEE
Confidence 599999999 99999999999999999999999998887 788999999998 78899999999999999999986541
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.....|...|.+++|+|++..+++++.|++|++||++++. ....+.+ |...|.+++|+|.++.++++|+
T Consensus 91 ---------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 91 ---------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ---------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-CCSCEEEEEECTTCTTEEEEEE
T ss_pred ---------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-cCCcEEEEEECCCCCCEEEEEe
Confidence 1122466789999999999999999999999999999874 4566766 9999999999996558999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec--CCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP--DDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS 686 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp--dg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~ 686 (721)
.|++|++||+++........ .++...+ .+.|+| ++.+|++|+.|+.|++||++.. .+.+|...|..++|+|+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 99999999998875433332 3343444 788876 7889999999999999999843 35667789999999999
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
+ ++|++|+..
T Consensus 240 ~-------~~l~s~s~D 249 (304)
T 2ynn_A 240 L-------PIIISGSED 249 (304)
T ss_dssp S-------SEEEEEETT
T ss_pred C-------CEEEEEcCC
Confidence 9 899999876
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=1.2e-29 Score=272.03 Aligned_cols=236 Identities=19% Similarity=0.248 Sum_probs=198.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||+|+|||..++..+..+. .|...|.+++|+ ++++++++|+.|+.|++|++.+....
T Consensus 57 ~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 57 KIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCc
Confidence 599999999 99999999999999999999999988887 788999999998 68899999999999999999765321
Q ss_pred c---cccccC--------------------------------cceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 535 I---RGMHYG--------------------------------AGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 535 ~---~~~~~~--------------------------------~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
. ..+.++ .....+ .|...|.+++|+|++..+++++.|++|++||
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 0 001000 011122 2567899999999999999999999999999
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS 657 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~ 657 (721)
+++++.+..+.+ |...|.+++|+|++ .++++|+.||+|++||+++++....+....+...+ +++|+|+|++|++|+.
T Consensus 213 ~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 213 VREGMCRQTFTG-HESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTTCSEEEEECC-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCCeeEEEEcC-CcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 999999999987 99999999999999 89999999999999999987543333333333334 8999999999999999
Q ss_pred CCcEEEEEcCC-C---cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 658 GTSMFVQSLRG-D---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 658 Dg~I~VWDl~g-~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
||.|++||+.. . .+.+|...|.+++|+|++ ..||||+..
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-------~~l~s~s~D 333 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-------MAVATGSWD 333 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-------CEEEEEcCC
Confidence 99999999873 2 356778899999999999 899999876
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=277.50 Aligned_cols=228 Identities=13% Similarity=0.158 Sum_probs=189.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe--ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI--PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l--~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|.+++|+| + +.+++|+.||+|+|||+.+++..... ...+|.+.|++++|+ +++++|++|+.||+|++||+.+++
T Consensus 84 ~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 84 GVADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp CEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCc
Confidence 489999999 5 57889999999999999988754433 234899999999998 789999999999999999999864
Q ss_pred CcccccccCcceeEe-ccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969 533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL 609 (721)
. ...+ .|...|.+++|++++. .+++++.|++|++||+++++....+.. .|...+.+++|+|++..++
T Consensus 161 ~----------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 161 V----------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp E----------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred E----------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence 3 2222 3667899999999885 678889999999999999998887752 2566799999999876899
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEEC
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTR 684 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fs 684 (721)
++|+.||+|++||++++++ +..+.+|...+ +++|+|+| ++|++|+.|++|+|||++... +.+|...|.+++|+
T Consensus 231 ~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp EEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence 9999999999999999854 56677888877 89999998 589999999999999998443 45678899999999
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
|++. .+|+|||..
T Consensus 309 p~~~------~llas~s~D 321 (344)
T 4gqb_B 309 PLNH------SLLTTVGWD 321 (344)
T ss_dssp SSST------TEEEEEETT
T ss_pred CCCC------eEEEEEcCC
Confidence 9983 578888865
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=269.74 Aligned_cols=225 Identities=18% Similarity=0.215 Sum_probs=200.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+| ++.++++|+.||+|++||+.+++.+..+. .|...+.+++|+ +++++|++|+.||.|++||+++++..
T Consensus 82 ~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 82 GVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKE 157 (321)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred CEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEe--CCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCcee
Confidence 589999999 89999999999999999999999998887 777889999998 78999999999999999999886542
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....+...|.+++|+|++..+++++.||.|++||+++++.+..+.+ |...|.+++|+|++ .+|++|+.
T Consensus 158 ---------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~-~~l~s~s~ 226 (321)
T 3ow8_A 158 ---------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDS-QLLVTASD 226 (321)
T ss_dssp ---------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTS-CEEEEECT
T ss_pred ---------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCC-CEEEEEcC
Confidence 11123445689999999999999999999999999999999999987 99999999999999 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~ 689 (721)
|++|++||++++.. ...+.+|...+ +++|+|++.+|++++.|+.|++||++. .. +..|...|.+++|+|++
T Consensus 227 dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-- 302 (321)
T 3ow8_A 227 DGYIKIYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-- 302 (321)
T ss_dssp TSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--
T ss_pred CCeEEEEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC--
Confidence 99999999998754 55677888777 899999999999999999999999983 32 45677899999999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
..|++++..
T Consensus 303 -----~~l~s~~~d 311 (321)
T 3ow8_A 303 -----SKIVSVGDD 311 (321)
T ss_dssp -----SEEEEEETT
T ss_pred -----CEEEEEeCC
Confidence 899999876
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=9.6e-30 Score=280.66 Aligned_cols=225 Identities=18% Similarity=0.304 Sum_probs=199.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||+|+|||+.+++....+. +|.+.|++++|+ +++.+|++|+.||+|++||+.+++..
T Consensus 110 ~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 110 PVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 599999999 89999999999999999999999988887 899999999998 68899999999999999999875431
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
..+ ..|...|.+++|+|++..+++++.|++|++||++++..+..+.+ |...|.++.|+|++ .++++|+.
T Consensus 186 -~~~--------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g-~~l~s~s~ 254 (410)
T 1vyh_C 186 -RTM--------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDG-TLIASCSN 254 (410)
T ss_dssp -ECC--------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred -EEE--------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCC-CEEEEEcC
Confidence 111 23556799999999999999999999999999999999999997 99999999999999 89999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--------------------CCEEEEEeCCCcEEEEEcC-CCc--
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--------------------DHYLLGKGSGTSMFVQSLR-GDP-- 670 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--------------------g~~Lasgs~Dg~I~VWDl~-g~~-- 670 (721)
|++|++||++++.+ ...+.+|...+ +++|+|+ |.+|++|+.|+.|++||++ +..
T Consensus 255 D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 255 DQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp TSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999998855 45667777777 8999996 7799999999999999998 332
Q ss_pred -ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 -FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 -l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.+|...|.++.|+|++ ..|++|+..
T Consensus 333 ~~~~h~~~v~~v~~~~~g-------~~l~s~s~D 359 (410)
T 1vyh_C 333 TLVGHDNWVRGVLFHSGG-------KFILSCADD 359 (410)
T ss_dssp EEECCSSCEEEEEECSSS-------SCEEEEETT
T ss_pred EEECCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence 45677889999999999 888888876
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=5.2e-29 Score=269.40 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=187.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---------------------------------------- 494 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---------------------------------------- 494 (721)
.|++++|+| ++.+|++|+.||+|+|||..+++....+..
T Consensus 66 ~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 66 KVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred eEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 599999999 899999999999999999887765544331
Q ss_pred ------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecC--CCEE
Q 004969 495 ------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELF 565 (721)
Q Consensus 495 ------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~l 565 (721)
.+|.+.|.+++|+ +++..|++|+.||+|++||+++++. ...+ .|...|.+++++|. +..+
T Consensus 145 ~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQL----------LQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp GGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCE----------EEEEECCSSCEEEEEECCCSSCCEE
T ss_pred ccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeE----------EEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 1466778888887 5777888888888888888887543 1222 35567899999874 6799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC-CeEEEE
Q 004969 566 LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVC 644 (721)
Q Consensus 566 ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~ 644 (721)
++++.||+|++||+++++.+..+.+ |...|++++|+|++ ..+++|+.|++|++||++++.....+....+. ...+++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 9999999999999999999999987 99999999999999 79999999999999999987544333333332 334899
Q ss_pred EecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 645 FSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 645 fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+|+|++|++|+.|+.|++||+. +.. +.+|...|.+++|+|++ ..||+|+..
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-------~~l~sgs~D 347 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-------TAFCSGSWD 347 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-------CEEEEEcCC
Confidence 99999999999999999999986 433 45678899999999999 899999876
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.4e-29 Score=279.41 Aligned_cols=226 Identities=10% Similarity=0.178 Sum_probs=200.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||+|++||+.+++++..+. +|...|.+++|+ +++++|++|+.||+|++||+.++...
T Consensus 152 ~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 152 SVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCC--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 699999999 89999999999999999999999888876 899999999998 68899999999999999999986541
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC---------
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS--------- 605 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg--------- 605 (721)
. ....|...|.++.+++++..+++++.|++|++||+++++....+.+ |...|.+++|+|++
T Consensus 228 -~--------~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 228 -K--------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp -E--------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCC
T ss_pred -E--------EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhc
Confidence 1 1123556799999999999999999999999999999999999987 99999999999963
Q ss_pred ----------CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C---c
Q 004969 606 ----------PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D---P 670 (721)
Q Consensus 606 ----------~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~---~ 670 (721)
+.++++|+.|++|++||++++.+ +..+.+|...+ +++|+|+|++|++|+.||.|++||++. . .
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 25899999999999999998844 56667788877 899999999999999999999999973 2 3
Q ss_pred ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+..|...|.+++|+|++ ++|++|+..
T Consensus 376 ~~~h~~~v~~l~~~~~~-------~~l~sgs~D 401 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTA-------PYVVTGSVD 401 (410)
T ss_dssp EECCSSCEEEEEECSSS-------SCEEEEETT
T ss_pred EcCCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence 55677899999999999 899999876
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.1e-29 Score=265.05 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=190.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++++||+|+.||+|+|||+.++ +.+.++. +|.++|++++|+++ ++++|++|+.||+|++||++++
T Consensus 11 ~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 11 MIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred ceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 599999999 9999999999999999999753 5566666 89999999999754 4789999999999999999875
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCC--
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHS-- 605 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg-- 605 (721)
.... ......|...|.+++|+|+ +..+++++.|++|++||++++. ....+.+ |...|.+++|+|++
T Consensus 88 ~~~~-------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 88 RWSQ-------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE 159 (297)
T ss_dssp CBCC-------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC--
T ss_pred ceEE-------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec-ccCccceEeecCCccc
Confidence 4210 0112235678999999997 7899999999999999998763 2345555 99999999999973
Q ss_pred ----------CcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecCC---CEEEEEeCCCcEEEEEcCCC
Q 004969 606 ----------PSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDD---HYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 606 ----------~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpdg---~~Lasgs~Dg~I~VWDl~g~ 669 (721)
+.+|++|+.|++|++||++++.. .....+.+|...+ +++|+|++ .+|++++.|++|++||++..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 26899999999999999987642 2345678888887 89999985 89999999999999998742
Q ss_pred -------cc--cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 670 -------PF--RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 670 -------~l--~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+ ..|...|.+++|+|++ ++||+|+..
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~las~~~D 275 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD 275 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSS-------CCEEEEETT
T ss_pred CCccceeeeecccCCCcEEEEEECCCC-------CEEEEEcCC
Confidence 12 3456789999999999 899999876
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.7e-29 Score=265.61 Aligned_cols=228 Identities=12% Similarity=0.139 Sum_probs=194.9
Q ss_pred CeEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+|. ++.+|++|+.||+|+||++.+++........+|...|.+++|+ +++..+++++.||+|++||+.++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~~i~lWd~~~~ 112 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAHIRLWDLENG 112 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTT
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCC
Confidence 5999999983 4679999999999999999887765444445999999999998 68899999999999999999886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
+.. .....+...+.+++|+|++..+++++.||.|++||+++++....+.. |...|.+++|+|++ .++++
T Consensus 113 ~~~---------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg-~~las 181 (321)
T 3ow8_A 113 KQI---------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDG-KYLAS 181 (321)
T ss_dssp EEE---------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTS-SEEEE
T ss_pred CEE---------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCC-CEEEE
Confidence 531 11123445688999999999999999999999999999999998886 89999999999999 89999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS 686 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~ 686 (721)
|+.||.|++||+++++ .+..+.+|...+ +++|+|++++|++|+.|+.|++||++.. .+..|...|.+++|+|+
T Consensus 182 g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 182 GAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp EETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence 9999999999999884 466677887777 9999999999999999999999999832 24567788999999999
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
+ ..|++|+..
T Consensus 260 ~-------~~l~s~s~D 269 (321)
T 3ow8_A 260 D-------THFVSSSSD 269 (321)
T ss_dssp S-------SEEEEEETT
T ss_pred C-------CEEEEEeCC
Confidence 9 889999876
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=268.83 Aligned_cols=230 Identities=16% Similarity=0.216 Sum_probs=192.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| ++++||+|+.||+|+|||+.++...... ...+|...|.+++|+ +++++|++|+.|++|++||+..+..
T Consensus 18 ~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECCC-E
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECCCcEEEEEccCCCe
Confidence 489999999 9999999999999999999988654322 234899999999998 6899999999999999999987532
Q ss_pred cccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---EEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
. ....+ .|...|.+++|+|++..+++++.|++|++||++++. .+..+.+ |...|.+++|+|++ .++
T Consensus 96 ~--------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~-~~l 165 (345)
T 3fm0_A 96 E--------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQ-ELL 165 (345)
T ss_dssp E--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSS-SCE
T ss_pred E--------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCC-CEE
Confidence 1 11222 356789999999999999999999999999998764 4556665 99999999999999 799
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCc----------------
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---------------- 670 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---------------- 670 (721)
++|+.|++|++||.+++.......+.+|...+ +++|+|+|++|++|+.|+.|++|+.. +..
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 99999999999999987655567788888888 89999999999999999999999963 111
Q ss_pred -ccc-cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 -FRD-FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 -l~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.. |...|..++|+|++ ..||+++..
T Consensus 246 ~~~~~h~~~v~~v~~~~~~-------~~l~s~~~d 273 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLT-------GALATACGD 273 (345)
T ss_dssp EECSSCSSCEEEEEECTTT-------CCEEEEETT
T ss_pred EecCCCCCcEEEEEEecCC-------CEEEEEeCC
Confidence 111 56689999999999 778888765
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=4.5e-29 Score=263.40 Aligned_cols=229 Identities=15% Similarity=0.156 Sum_probs=193.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+| +++++++|+.||+|++||+.+++.+..+. +|.+.|++++|+ +++.+|++|+.||+|++||++++...
T Consensus 57 ~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 57 PVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWAL 132 (304)
T ss_dssp CEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred cEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEe--CCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcch
Confidence 589999999 99999999999999999999999998887 899999999998 68899999999999999999875332
Q ss_pred ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC--CCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP--dg~~lLaS 611 (721)
.. ....|...|.+++|+| ++..+++++.|++|++||++++.....+...|...+..+.|+| ++ .++++
T Consensus 133 ~~--------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s 203 (304)
T 2ynn_A 133 EQ--------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT 203 (304)
T ss_dssp EE--------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEE
T ss_pred hh--------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEE
Confidence 11 1223567799999999 4678999999999999999988877777655778999999987 45 69999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPS 686 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~ 686 (721)
|+.|++|++||++++++ +..+.+|...+ +++|+|++++|++|+.||.|++||++. +. +..+...+.+++|+|.
T Consensus 204 ~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EcCCCeEEEEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 99999999999998844 66677888877 899999999999999999999999973 32 3344568999999998
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
+. ..++|+|+..
T Consensus 282 ~~-----~~~~asg~~~ 293 (304)
T 2ynn_A 282 GR-----KNYIASGFDN 293 (304)
T ss_dssp CG-----GGCEEEEETT
T ss_pred CC-----ceEEEEecCC
Confidence 72 1257777654
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=3e-28 Score=259.10 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=189.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++++|+|.++++|++|+.||+|++|++.+ +..+..+. +|...|.+++|+ +++.+|++|+.||+|++||+.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s-~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEEC-CCCCEEEEEeCCCEEEEEECC
Confidence 5999999996668999999999999999864 23455565 899999999998 789999999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC----
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS---- 605 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg---- 605 (721)
+++.. .....|...|.+++|+|++..+++++.|++|++||++ ++.+..+.+ |...|.++.|+|.+
T Consensus 96 ~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 96 TGETY---------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG-HNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TTEEE---------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECCC-----
T ss_pred CCCee---------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec-cCCcEEEEEEccCCCCCC
Confidence 86531 1122466789999999999999999999999999997 567777876 99999999999954
Q ss_pred -CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-cccc--cccCeEE
Q 004969 606 -PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRD--FNMSILA 680 (721)
Q Consensus 606 -~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~--~~~~V~~ 680 (721)
...+++++.|++|++||+++.+ ....+.+|...+ +++|+|+|++|++|+.||.|++||++.. .+.. ....|.+
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 242 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS 242 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE
T ss_pred CccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE
Confidence 2489999999999999999874 355667788777 8999999999999999999999999843 2222 2468999
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++|+|++ ..|++++..
T Consensus 243 ~~~sp~~-------~~la~~~~~ 258 (319)
T 3frx_A 243 LAFSPNR-------YWLAAATAT 258 (319)
T ss_dssp EEECSSS-------SEEEEEETT
T ss_pred EEEcCCC-------CEEEEEcCC
Confidence 9999999 777777653
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=7.4e-28 Score=253.37 Aligned_cols=197 Identities=17% Similarity=0.341 Sum_probs=168.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||.|++|+..+++....+. +|...|.+++|+ +++++|++|+.||.|++||+.+++..
T Consensus 25 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEE
Confidence 599999999 99999999999999999999999888886 899999999998 68899999999999999999886531
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....|...|.+++|+|++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|++ .++++|+.
T Consensus 101 ---------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~ 169 (312)
T 4ery_A 101 ---------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDG-SLIVSSSY 169 (312)
T ss_dssp ---------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred ---------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCC-CEEEEEeC
Confidence 11223556799999999999999999999999999999999999986 99999999999999 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
||.|++||+++++...... ..+...+ .++|+|++++|++++.||.|++||++
T Consensus 170 d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp TSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred CCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999875433222 2333344 78888888888888878888877764
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=266.33 Aligned_cols=202 Identities=18% Similarity=0.152 Sum_probs=170.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||+|++||+.+++.+..+. +|.+.|++++|+|.+..+|++|+.||+|++||+++++..
T Consensus 129 ~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 205 (344)
T 4gqb_B 129 IVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA 205 (344)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE
T ss_pred CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEEecCCCCCceeeecccccccccccccccee
Confidence 599999999 99999999999999999999999999887 899999999999655678999999999999999987652
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
... ....+...+.+++|+|++ ..+++|+.||+|++||+++++.+..+.+ |...|++++|+|++..+|++|+
T Consensus 206 ~~~-------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 206 SQI-------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp EEC-------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred eee-------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEe
Confidence 111 011233458999999865 4667788999999999999999999997 9999999999999867899999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCCc
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~~ 670 (721)
.|++|+|||+++++ +..+.+|...+ +++|+|+++ +|++++.|++|++|++...+
T Consensus 278 ~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 278 EDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999999999874 34567888887 899999986 56789999999999998544
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.7e-28 Score=267.07 Aligned_cols=233 Identities=21% Similarity=0.333 Sum_probs=194.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||+|+|||+.+++.+..+. +|...|.+++|+ +++.+|++|+.||+|++||+++++.
T Consensus 125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~- 199 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQC- 199 (393)
T ss_dssp BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCee-
Confidence 589999999 99999999999999999999999888887 899999999998 7889999999999999999988543
Q ss_pred ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEc------cccCCCeEEEEEcCCCCc
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFA------DMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------~~h~~~V~sI~fsPdg~~ 607 (721)
...+.+...+.+++|+| ++..+++++.|+.|++||+++++.+..+. .+|...|.+++|+|++ .
T Consensus 200 ---------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~ 269 (393)
T 1erj_A 200 ---------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-Q 269 (393)
T ss_dssp ---------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-S
T ss_pred ---------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-C
Confidence 33445667799999999 78899999999999999999998887762 2389999999999999 7
Q ss_pred EEEEEECCCcEEEEECCCCCc----------eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---cc
Q 004969 608 IFATSSFDQDVKLWDLRQKPI----------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FR 672 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~----------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~ 672 (721)
++++|+.|++|++||+++... .....+.+|...+ +++|+|++.+|++|+.|+.|++||++ +.+ +.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 999999999999999986421 1234556777777 89999999999999999999999987 443 45
Q ss_pred ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 ~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|...|.+++|+|...+.. .-++||+|+..
T Consensus 350 ~h~~~v~~v~~~~~~~~~p-~~~~l~sgs~D 379 (393)
T 1erj_A 350 GHRNSVISVAVANGSSLGP-EYNVFATGSGD 379 (393)
T ss_dssp CCSSCEEEEEECSSCTTCT-TCEEEEEEETT
T ss_pred CCCCCEEEEEecCCcCcCC-CCCEEEEECCC
Confidence 6778999999987421100 01899999876
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=7.7e-29 Score=270.22 Aligned_cols=236 Identities=17% Similarity=0.245 Sum_probs=187.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP- 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~- 533 (721)
.|++++|+| ++++|++|+.||+|+|||+.+++....+. +|...|.+++|+ +++++|++|+.|+.|++||+.+...
T Consensus 68 ~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 68 KVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred EEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccc
Confidence 599999999 89999999999999999999999888887 788888888987 6788888888888888888753210
Q ss_pred --------ccccc------------------c-------------cCcceeE------eccCCCeEEEEEec-CCCEEEE
Q 004969 534 --------SIRGM------------------H-------------YGAGTVT------FDEFDQLTSVHVNS-MDELFLA 567 (721)
Q Consensus 534 --------~~~~~------------------~-------------~~~~~~~------~~~~~~V~sv~~sp-~~~~lls 567 (721)
..... . ....... ..|...|.++++++ ++..+++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 00000 0 0000111 13556799999987 6788999
Q ss_pred EeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC-----CCeE
Q 004969 568 SGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-----KGNV 641 (721)
Q Consensus 568 ~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-----~~~v 641 (721)
|+.|++|++||++ .++.+..+.+ |...|++++|+|++ .+|++|+.||+|++||++++.....+..... ...+
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred EECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence 9999999999998 4577888887 99999999999999 7999999999999999999865444332211 1224
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---c----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 642 -MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---F----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 642 -sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+++|+|+|++|++|+.||.|++||+.. .. + ..|...|.+++|+|++ ..|+||+..
T Consensus 302 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D 365 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-------SALCTGSWD 365 (380)
T ss_dssp SEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-------SEEEEECTT
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-------CEEEEeeCC
Confidence 899999999999999999999999862 22 1 4677899999999999 899999876
No 17
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2e-29 Score=267.78 Aligned_cols=230 Identities=13% Similarity=0.144 Sum_probs=189.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++++||+|+.||+|+|||+.++.. +..+. +|.+.|++++|+++ ++++|++|+.||+|++||++++
T Consensus 15 ~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 15 MIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp CEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred eEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 599999999 999999999999999999988754 44555 89999999999754 5889999999999999999875
Q ss_pred CCcccccccCcceeEe-ccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCC
Q 004969 532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg 605 (721)
... ....+ .|...|.+++|+|+ +..+++++.|++|++||++++.. ...+.+ |...|.+++|+|++
T Consensus 92 ~~~--------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 92 TWE--------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAV 162 (316)
T ss_dssp CCC--------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-SSSCBCCCEECCCC
T ss_pred cce--------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-ccCCcceEEEcccc
Confidence 421 11122 36678999999998 67899999999999999987632 233344 99999999999973
Q ss_pred ----------------CcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEE
Q 004969 606 ----------------PSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFV 663 (721)
Q Consensus 606 ----------------~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~V 663 (721)
..+|++|+.|++|++||++... ......+.+|...+ +++|+|++ .+|++++.|++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 1589999999999999997542 23456778888887 89999987 89999999999999
Q ss_pred EEcCC--------CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 664 QSLRG--------DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 664 WDl~g--------~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+++. ..+..|...|.+++|+|++ ++||+|+..
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-------~~las~~~D 283 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-------NILAVSGGD 283 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTT-------CCEEEEESS
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCC-------CEEEEEcCC
Confidence 99863 1245567899999999999 889998875
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=7.3e-28 Score=256.15 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=190.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++.++++|+.||+|++||++....
T Consensus 67 ~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~~~~- 141 (319)
T 3frx_A 67 IVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCL- 141 (319)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTSCEE-
T ss_pred cEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeE-
Confidence 589999999 99999999999999999999999998887 899999999998 7889999999999999999975211
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCC------CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~------~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.....|...|.++.++|.. ..+++++.|+.|++||+++++....+.+ |...|.+++|+|++ .+
T Consensus 142 ---------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g-~~ 210 (319)
T 3frx_A 142 ---------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDG-TL 210 (319)
T ss_dssp ---------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTS-SE
T ss_pred ---------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCC-CE
Confidence 1223456778999998853 4799999999999999999999999987 99999999999999 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc------------cccccc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP------------FRDFNM 676 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~------------l~~~~~ 676 (721)
|++|+.||+|++||+++++. +..+..+....+++|+|++.++++++ ++.+++|++.... ...+..
T Consensus 211 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKA--MYTLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp EEEEETTCEEEEEETTTTEE--EEEEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred EEEEeCCCeEEEEECCCCcE--EEEecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence 99999999999999998754 55555566666999999999999887 4569999987321 122345
Q ss_pred CeEEEEECCCCCcccccccEEEEecCC
Q 004969 677 SILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 677 ~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+.+++|+|++ ..|++|+..
T Consensus 288 ~v~~~~~spdg-------~~l~sg~~D 307 (319)
T 3frx_A 288 HAVSLAWSADG-------QTLFAGYTD 307 (319)
T ss_dssp CEEEEEECTTS-------SEEEEEETT
T ss_pred ceeEEEECCCC-------CEEEEeecC
Confidence 78999999999 899999876
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=259.11 Aligned_cols=231 Identities=15% Similarity=0.202 Sum_probs=187.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+| ++++|++|+.||+|++|+..++. .+..+. +|...|.+++|+ +++++|++|+.||+|++||+..+.
T Consensus 63 ~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 63 TVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS
T ss_pred cEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEcc--CCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC
Confidence 599999999 99999999999999999998775 345554 899999999998 689999999999999999998754
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.... ......|...|.+++|+|++..+++++.|++|++||.++++ ....+.+ |...|.+++|+|+| .+|+
T Consensus 139 ~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g-~~l~ 210 (345)
T 3fm0_A 139 EYEC------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSG-QRLA 210 (345)
T ss_dssp CEEE------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTS-SEEE
T ss_pred CeEE------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCC-CEEE
Confidence 3100 01122356779999999999999999999999999999875 3467776 99999999999999 8999
Q ss_pred EEECCCcEEEEECCCCCc-------------eeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----
Q 004969 611 TSSFDQDVKLWDLRQKPI-------------QPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----- 670 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~-------------~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----- 670 (721)
+|+.|++|++||...... ..+..+.+ |...+ +++|+|++..|++++.|+.|++|+.....
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 999999999999743211 11223333 55555 89999999999999999999999986321
Q ss_pred --------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 --------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 --------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
...|...|.+++|+|++. .+||||+..
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~------~~laS~s~D 325 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEP------GLLASCSDD 325 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSST------TEEEEEETT
T ss_pred eEEEEeeecccccCcEeEeEEeCCCc------eEEEEcCCC
Confidence 235678899999999972 489999876
No 20
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=4.3e-29 Score=276.90 Aligned_cols=204 Identities=24% Similarity=0.347 Sum_probs=171.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+|+||+|||.++++||+|+.||+|+|||+.++.....+...+|.+.|++|+|+|.++++|+||+.||+|++||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 69999999988889999999999999999988776666666999999999999778899999999999999999864321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
..... -.+...+.+++|++++..+++|+.||.|++||++ ++.+..+.+ |...|.+++|+|+++.++++|+.
T Consensus 201 --~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 201 --VFASS-----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRM-HKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp --EEECC-----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBC-CSSCEEEEEECTTCSSEEEEEET
T ss_pred --EEecc-----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEec-ccceEEeeeecCCCceEEEEecC
Confidence 00000 0122347889999999999999999999999997 456667776 99999999999999779999999
Q ss_pred CCcEEEEECCCCCceeE-EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 615 DQDVKLWDLRQKPIQPC-YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~-~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|++|++||+++...... ....+|...+ +++|+|+|.+|++++.||.|++||++
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 99999999998654332 2334566666 89999999999999999999999987
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-27 Score=252.48 Aligned_cols=232 Identities=14% Similarity=0.204 Sum_probs=181.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+| + +|++|+.||+|++||+.++ .....+...+|...|.+++|+ +++.+|++|+.|++|++||+....
T Consensus 16 ~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 16 KIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp CEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSCEEEEEC----
T ss_pred ceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCcEEEEEcccCc
Confidence 599999999 4 9999999999999999875 445555333499999999998 688999999999999999996532
Q ss_pred CcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 533 PSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 533 ~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s----~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.... ....... ..|...|.+++|+|++.++++++.|++|++||++. .+.+..+.+ |...|.+++|+|++ .
T Consensus 92 ~~~~---~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~-~ 166 (330)
T 2hes_X 92 DRTF---EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHVIWHPSE-A 166 (330)
T ss_dssp ---C---CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEEEECSSS-S
T ss_pred Cccc---cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEEEECCCC-C
Confidence 1000 0011112 24667899999999999999999999999999953 256677776 99999999999998 7
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--CCEEEEEeCCCcEEEEEcCCC---------c---cc
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--DHYLLGKGSGTSMFVQSLRGD---------P---FR 672 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--g~~Lasgs~Dg~I~VWDl~g~---------~---l~ 672 (721)
+|++|+.|++|++||.+++....+..+.+|...+ +++|+|+ +.+|++|+.|+.|++||+++. . +.
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876445567788888887 8999998 779999999999999998632 1 12
Q ss_pred -ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 -DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 -~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|...|.+++|+|.+ +|++|+..
T Consensus 247 ~~h~~~v~~v~~s~~~--------~l~s~~~d 270 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG--------LIASVGAD 270 (330)
T ss_dssp SCCSSCEEEEEECTTS--------CEEEEETT
T ss_pred cccccceEEEEEcCCC--------EEEEEeCC
Confidence 267789999999764 45666544
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=5.5e-27 Score=251.44 Aligned_cols=226 Identities=12% Similarity=0.162 Sum_probs=183.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++++|++|+.||+|++||+.....
T Consensus 78 ~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~- 152 (343)
T 2xzm_R 78 FVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECK- 152 (343)
T ss_dssp CEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEE-
T ss_pred ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCce-
Confidence 599999999 99999999999999999999999988887 899999999998 6889999999999999999974211
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD----------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~----------~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
... . ....|...|.+++|+|.+ ..+++++.|+.|++|| .+++....+.+ |...|.+++|+|+
T Consensus 153 ~~~-~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 153 FSS-A-----EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA-HESNVNHLSISPN 224 (343)
T ss_dssp EEC-C-----TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEEC-CSSCEEEEEECTT
T ss_pred eee-e-----cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcC-ccccceEEEECCC
Confidence 000 0 001355678999999886 7899999999999999 45677777876 9999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-cc-----c------
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF-----R------ 672 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l-----~------ 672 (721)
| .+|++|+.||+|++||++.... ....+.......+++|+|++.++++++ |+.|++|++... .. .
T Consensus 225 g-~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 225 G-KYIATGGKDKKLLIWDILNLTY-PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp S-SEEEEEETTCEEEEEESSCCSS-CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred C-CEEEEEcCCCeEEEEECCCCcc-cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchh
Confidence 9 8999999999999999954322 122332333444999999999887654 888999998632 11 1
Q ss_pred -----ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 -----DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 -----~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|...+.+++|+|++ ..|++|+..
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g-------~~l~sg~~D 330 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALG-------KKLFAGFTD 330 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSS-------CCEEEEETT
T ss_pred hhhhcCCCCceEEEEECCCC-------CeEEEecCC
Confidence 455679999999999 889998876
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=6.6e-28 Score=261.20 Aligned_cols=234 Identities=16% Similarity=0.237 Sum_probs=184.3
Q ss_pred CeEEEEEeCCCCCEEEEEEC------CCeEEEEECCCCeEEEEe--ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTL------DGEIVVVNHENENIVSYI--PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~------DG~I~IWdl~tg~~i~~l--~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
.|++++|+| ||.+||+|+. ||.|++|+..++.....+ ...+|...|++++|+ +++ .+++++.||+|++|
T Consensus 44 ~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~d~-~~l~~s~dg~v~lW 120 (357)
T 4g56_B 44 QIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEK-GILVASDSGAVELW 120 (357)
T ss_dssp EEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE-TTT-EEEEEETTSCEEEC
T ss_pred CEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc-CCC-CEEEEECCCEEEEe
Confidence 699999999 9999999997 788999998876543221 112688899999998 454 56788999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
|+.+++.... .......|...|.+++|+|++..+++++.|++|++||+++++.+..+.+ |...|++++|+|++.
T Consensus 121 d~~~~~~~~~-----~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 121 EILEKESLLV-----NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKD 194 (357)
T ss_dssp --------CC-----CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCS
T ss_pred eccccceeEE-----EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCC
Confidence 9988654211 1122335678899999999999999999999999999999999999997 999999999999986
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCCCcEEEEEcCC-C---cccccccCeEE
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSGTSMFVQSLRG-D---PFRDFNMSILA 680 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~g-~---~l~~~~~~V~~ 680 (721)
.++++++.||+|++||+++++.........+...+ +++|+|+ +.+|++|+.|+.|++||++. + .+..|...|.+
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 78999999999999999998765555555555555 8999997 56889999999999999983 2 24556789999
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++|+|++. .+||+|+..
T Consensus 275 l~~sp~~~------~~lasgs~D 291 (357)
T 4g56_B 275 LAYSYHSS------PFLASISED 291 (357)
T ss_dssp EEECSSSS------CCEEEEETT
T ss_pred EEEcCCCC------CEEEEEeCC
Confidence 99999873 578888765
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-27 Score=252.76 Aligned_cols=230 Identities=15% Similarity=0.200 Sum_probs=177.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|++++|+| ++++|++|+.||+|+|||+.. .+.+..+. +|...|.+++|+ +++++|++|+.||+|++||
T Consensus 60 ~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 60 AIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE--GHENEVKGVAWS-NDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEEC-TTSCEEEEEETTSCEEEEE
T ss_pred CEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc--CCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEe
Confidence 599999999 899999999999999999853 34555555 899999999998 6899999999999999999
Q ss_pred cCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--cEEEEEccccCCCeEEEEEcCC
Q 004969 528 IRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~~V~sI~fsPd 604 (721)
+....... ..... ..|...|.+++|+|++..+++++.|++|++||..++ +++..+.+ |...|.+++|+|+
T Consensus 136 ~~~~~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~ 208 (330)
T 2hes_X 136 TDESGEEY------ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKT 208 (330)
T ss_dssp CCTTCCCC------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCS
T ss_pred ccCCCCCe------EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCC
Confidence 95432110 11112 235678999999999999999999999999999876 67788887 9999999999998
Q ss_pred C-CcEEEEEECCCcEEEEECCCCCc------eeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----
Q 004969 605 S-PSIFATSSFDQDVKLWDLRQKPI------QPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----- 670 (721)
Q Consensus 605 g-~~lLaSgs~DgtIrIWDlrs~~~------~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----- 670 (721)
+ ...+++|+.|++|++||++.+.. .....+.. |...+ +++|++++ +|++++.||.|++|+.....
T Consensus 209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence 3 26899999999999999875421 22333443 66666 89999765 88999999999999987431
Q ss_pred --cccccc-CeEEEEECC--CCCcccccccEEEEecCC
Q 004969 671 --FRDFNM-SILAAYTRP--SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 --l~~~~~-~V~~v~fsP--~~~~~~v~v~lLASgs~~ 703 (721)
...|.. .|.+++|+| ++ .+||+|+..
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~~~-------~~las~s~D 318 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELNGK-------TILATGGDD 318 (330)
T ss_dssp EESCTTTTSCEEEEEEC------------CCEEEEETT
T ss_pred ccccccccceEEEEEEecCCCc-------eEEEEecCC
Confidence 234555 899999999 57 789999876
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=1.3e-26 Score=248.46 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=181.9
Q ss_pred CeEEEEE-----eCCCCCEEEEEECCCeEEEEECCCC-------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969 455 RPRQFEY-----HPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (721)
Q Consensus 455 ~V~~laf-----sP~dg~~LasGs~DG~I~IWdl~tg-------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt 522 (721)
.|++++| +|.++.+|++|+.||+|++||+.++ .....+. +|...|.+++|+ +++.++++|+.||+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~-~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALS-QENCFAISSSWDKT 99 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEEC-SSTTEEEEEETTSE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEEC-CCCCEEEEEcCCCc
Confidence 5999999 6658899999999999999998753 3445555 899999999998 68899999999999
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVK 600 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~ 600 (721)
|++||+++++.. .....|...|.+++|+|++..+++++.|++|++||+... ...... ..|...|.+++
T Consensus 100 v~lwd~~~~~~~---------~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 100 LRLWDLRTGTTY---------KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEETTSSCEE---------EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEEEECCCCcEE---------EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999986531 112246678999999999999999999999999999843 333333 13889999999
Q ss_pred EcCCCC---------cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--C
Q 004969 601 FSNHSP---------SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--G 668 (721)
Q Consensus 601 fsPdg~---------~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g 668 (721)
|+|++. .++++++.|++|++||... .....+.+|...+ +++|+|+|++|++|+.||.|++||+. +
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999862 5899999999999999543 3355666777777 89999999999999999999999994 2
Q ss_pred Ccccc--cccCeEEEEECCCCCcccccccEEEEecC
Q 004969 669 DPFRD--FNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 669 ~~l~~--~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
.+... +...|.+++|+|++ .++++|+.
T Consensus 247 ~~~~~~~~~~~v~~v~~sp~~-------~~la~~~d 275 (343)
T 2xzm_R 247 YPQREFDAGSTINQIAFNPKL-------QWVAVGTD 275 (343)
T ss_dssp SCSEEEECSSCEEEEEECSSS-------CEEEEEES
T ss_pred ccceeecCCCcEEEEEECCCC-------CEEEEECC
Confidence 22222 34579999999998 77776643
No 26
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.8e-27 Score=247.61 Aligned_cols=238 Identities=14% Similarity=0.164 Sum_probs=194.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++++|+| ++.+|++|+.||.|++||+.++ +....+. +|...|++++|+|. ++.+|++|+.||+|++||+.
T Consensus 13 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 13 LVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 599999999 9999999999999999999876 3555555 89999999999954 58999999999999999998
Q ss_pred CCCCcccccccCcceeE-eccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEc------------cccCC
Q 004969 530 HMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFA------------DMHKE 594 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------~~h~~ 594 (721)
++......... ..... ..|...|.+++|+|+ +..+++++.||.|++||+++++.+..+. ..|..
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 90 PDQEECSGRRW-NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp TTSCTTSSCSE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCcccccccCc-ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 86532111000 11222 246678999999999 9999999999999999999876543322 13788
Q ss_pred CeEEEEEcCC--CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEEEEcC
Q 004969 595 HINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 595 ~V~sI~fsPd--g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~VWDl~ 667 (721)
.+.+++|+|+ .+..+++++.|+.+.+|+...+.......+.+|...+ +++|+|++ .+|++|+.||.|++||++
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 9999999997 2379999999999999998888766677888888877 99999998 899999999999999987
Q ss_pred CC-----------------------------------------------c---ccccccCeEEEEECCCCCcccccccEE
Q 004969 668 GD-----------------------------------------------P---FRDFNMSILAAYTRPSSKSEIVKVNLL 697 (721)
Q Consensus 668 g~-----------------------------------------------~---l~~~~~~V~~v~fsP~~~~~~v~v~lL 697 (721)
.. . +..|...|.+++|+|++ .+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------~~l 321 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-------TIL 321 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-------CCE
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-------CEE
Confidence 31 1 33466789999999999 899
Q ss_pred EEecCC
Q 004969 698 ASTDHC 703 (721)
Q Consensus 698 ASgs~~ 703 (721)
++|+..
T Consensus 322 ~s~~~d 327 (351)
T 3f3f_A 322 SSAGDD 327 (351)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 999876
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=3e-26 Score=241.68 Aligned_cols=234 Identities=17% Similarity=0.226 Sum_probs=186.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++|+|+|+++++|+||+.||+|+|||+.+++ ....+. +|...|.+++|+ +++.+|++|+.||.|++|+..
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s-~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEEC-CCCCEEEEEcccccceEEeec
Confidence 599999999668999999999999999987653 344554 899999999998 789999999999999999998
Q ss_pred CCCCcccccc-----------------------c--------Cccee---EeccCCCeEEEEEecCC--CEEEEEeCCCc
Q 004969 530 HMPPSIRGMH-----------------------Y--------GAGTV---TFDEFDQLTSVHVNSMD--ELFLASGYSKN 573 (721)
Q Consensus 530 ~~~~~~~~~~-----------------------~--------~~~~~---~~~~~~~V~sv~~sp~~--~~lls~g~Dg~ 573 (721)
.......... + ..... ...+...+..++|++++ ..+++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 6432110000 0 00000 11244668889987764 56788889999
Q ss_pred EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE
Q 004969 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La 653 (721)
|++||+++++.+..+.+ |...|++++|+|++ .+|++|+.||+|++||+++.+. +..+.++....+++|+|++.+++
T Consensus 197 i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIG-HTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH--LYTLDGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp EEEEETTTTEEEEEECC-CSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE--EEEEECSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCceeeEecC-CCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce--eeeecCCceEEeeecCCCCceee
Confidence 99999999999999987 99999999999999 7999999999999999998744 55556666666899999887665
Q ss_pred EEeCCCcEEEEEcCCCc-------------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 654 GKGSGTSMFVQSLRGDP-------------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 654 sgs~Dg~I~VWDl~g~~-------------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++.|+.|++||+++.. ...|...|.+++|+|++ ..|++|+..
T Consensus 273 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D 327 (340)
T 4aow_A 273 -AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-------QTLFAGYTD 327 (340)
T ss_dssp -EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-------SEEEEEETT
T ss_pred -ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-------CEEEEEeCC
Confidence 5569999999997432 23456789999999999 899999876
No 28
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.9e-28 Score=263.86 Aligned_cols=230 Identities=12% Similarity=0.125 Sum_probs=182.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+. +|...|++++|+ +++++|++|+.||+|++||+.++.
T Consensus 13 ~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 13 PSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFS--DHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBC--CCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------
T ss_pred cEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEe--cCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCC
Confidence 489999999 9999999999999999999988 4555554 899999999998 678999999999999999999865
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---EEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
.. ........|...|.+++|+|++..+++++.|+.|++||+++++ ....+.+.|...|.+++|+|++ .++
T Consensus 89 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l 161 (377)
T 3dwl_C 89 TW------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLL 161 (377)
T ss_dssp CC------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEE
T ss_pred ce------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEE
Confidence 10 0112223466789999999999999999999999999999887 3677775599999999999998 899
Q ss_pred EEEECCCcEEEEECCCCC----------------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-c-
Q 004969 610 ATSSFDQDVKLWDLRQKP----------------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-P- 670 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~----------------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~- 670 (721)
++|+.|++|++||++... ......+ +|...+ +++|+|+|++|++++.||.|++||++.. .
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 999999999999986321 1233444 666666 8999999999999999999999999832 2
Q ss_pred ------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 ------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 ------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+..|...|.+++|+|++ .+|++|+..
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~ 272 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANES-------AIVAAGYNY 272 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETT-------EEEEEESSS
T ss_pred ceeeEeecCCCCceEEEEEcCCC-------CEEEEEcCC
Confidence 34566789999999999 888888754
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=8.5e-27 Score=255.17 Aligned_cols=227 Identities=13% Similarity=0.214 Sum_probs=187.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC----------------CCCCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF----------------GAMNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~----------------~H~~~V~sl~fsp~d~~~LaSgs 518 (721)
.|.+++|+| ++++||+|+ +++++||++.+|+.+..+... .+...|.+++|+ +++++|++|+
T Consensus 66 ~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~ 142 (393)
T 1erj_A 66 VVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGA 142 (393)
T ss_dssp CCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEc
Confidence 589999999 999999987 789999999999988777531 122349999998 7899999999
Q ss_pred CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV 598 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s 598 (721)
.||+|++||+.+++.. .....|...|.+++|+|++..+++++.|++|++||+++++....+. +...+.+
T Consensus 143 ~d~~i~iwd~~~~~~~---------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~ 211 (393)
T 1erj_A 143 EDRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT 211 (393)
T ss_dssp TTSCEEEEETTTTEEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred CCCeEEEEECCCCcEE---------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEE
Confidence 9999999999875431 1122356789999999999999999999999999999999888887 6788999
Q ss_pred EEEcC-CCCcEEEEEECCCcEEEEECCCCCceeEEE-----ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--
Q 004969 599 VKFSN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-- 669 (721)
Q Consensus 599 I~fsP-dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~-----~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-- 669 (721)
++|+| ++ .++++|+.|++|++||++++....... ..+|...+ +++|+|+|++|++|+.|+.|++||++..
T Consensus 212 ~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 212 VAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 99999 56 899999999999999999876433221 14566666 8999999999999999999999998631
Q ss_pred --------------cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 670 --------------PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 670 --------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+.+|...|.+++|+|++ ..|++|+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~sgs~D 331 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-------EYILSGSKD 331 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGG-------CEEEEEETT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCC-------CEEEEEeCC
Confidence 234567789999999999 888888876
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=3.2e-27 Score=255.84 Aligned_cols=199 Identities=19% Similarity=0.183 Sum_probs=172.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||+|++||+.+++.+..+. +|...|++++|+|....++++++.||+|++||+++++..
T Consensus 141 ~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 141 IVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 599999999 99999999999999999999999998887 899999999998555568999999999999999986652
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
... ....+...+.+++|+|+++ .+++++.|+.|++||+++++.+..+.+ |...|++++|+|++..+|++|+
T Consensus 218 ~~~-------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 218 TRI-------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp CBC-------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred eee-------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEe
Confidence 111 1112345689999999854 677788999999999999999999987 9999999999999867899999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|++|+|||+++++. . ...+|...+ +++|+| ++.+|++++.||.|++|++.
T Consensus 290 ~D~~i~iwd~~~~~~--~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 290 EDCTVAVLDADFSEV--F-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp TTSCEEEECTTSCEE--E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCCEEEEEECCCCcE--e-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 999999999998753 3 334677777 899999 89999999999999999997
No 31
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=1e-26 Score=269.75 Aligned_cols=235 Identities=12% Similarity=0.157 Sum_probs=188.9
Q ss_pred CeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| ++ .++++|+.|++|++||..+++....+. +|...|++++|+ +++.+|++|+.||+|++||+.+++.
T Consensus 149 ~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 149 AMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcE
Confidence 699999999 55 479999999999999999988888887 899999999998 6899999999999999999987654
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc------------------------
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA------------------------ 589 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------------------ 589 (721)
... +.. .......|...|.+++|+|++..+++++.|++|++||+++++.+..+.
T Consensus 225 ~~~-~~~-~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 225 TGV-FED-DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp EEE-CBC-TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred eee-ecc-ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 211 100 000112467889999999999999999999999999999877654331
Q ss_pred ------------------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-------------------
Q 004969 590 ------------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY------------------- 632 (721)
Q Consensus 590 ------------------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~------------------- 632 (721)
.+|...|.+++|+|+| .++++++.|++|++||+.++......
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 1388999999999999 89999999999999999875321110
Q ss_pred --------------------------------------------------------------EecCCCCeEEEEEecCCC
Q 004969 633 --------------------------------------------------------------TASSSKGNVMVCFSPDDH 650 (721)
Q Consensus 633 --------------------------------------------------------------~~~~~~~~vsl~fSpdg~ 650 (721)
.+.......+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 000001123789999999
Q ss_pred EEEEEeCCCcEEEEEcCCCcc-----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 651 YLLGKGSGTSMFVQSLRGDPF-----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~g~~l-----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|++|+.|+.|++||+.+..+ ..|...|.+++|+|++ .+||+++..
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg-------~~las~s~d 512 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-------AFLVATDQS 512 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-------SEEEEEETT
T ss_pred EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC-------CEEEEEcCC
Confidence 999999999999999975432 3567889999999999 899998875
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-27 Score=250.13 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=189.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++++|++|+.||.|+|||+. +++.+..+. +|...|++++|+++ ++.+|++|+.||.|++||+.++
T Consensus 13 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 13 LIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred cEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 599999999 99999999999999999998 445555555 89999999999743 2899999999999999999885
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcC----
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN---- 603 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsP---- 603 (721)
+.. .......|...|.+++|+|+ +..+++++.|+.|++||++++. ....+.. |...|.+++|+|
T Consensus 90 ~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 90 RWS-------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE 161 (379)
T ss_dssp EEE-------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC-CTTCEEEEEECCCC--
T ss_pred cee-------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC-CCCceEEEEEcCcccc
Confidence 421 01112235678999999999 8999999999999999999873 3445555 999999999999
Q ss_pred ---------CCCcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 004969 604 ---------HSPSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPD---DHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 604 ---------dg~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpd---g~~Lasgs~Dg~I~VWDl~g 668 (721)
++ .++++|+.||.|++||++++... ....+.+|...+ +++|+|+ +.+|++++.||.|++||++.
T Consensus 162 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 46 79999999999999999876532 345667777777 8999999 89999999999999999984
Q ss_pred C------c---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 669 D------P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 669 ~------~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. . ...+...|.+++|+|++ ..|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~d 277 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD 277 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSS-------CCEEEEESS
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCC-------CEEEEecCC
Confidence 2 1 12256789999999999 777777765
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.5e-26 Score=239.41 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=195.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||.|++||+.+++.+..+. +|...|.+++|+ +++++|++++.||+|++||+.+++..
T Consensus 34 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 34 PLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVD-CFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 599999999 99999999999999999999999998887 899999999998 68899999999999999999876542
Q ss_pred cccccc-----------Cc-------------cee------------------------EeccCC--CeEEEEEecCCCE
Q 004969 535 IRGMHY-----------GA-------------GTV------------------------TFDEFD--QLTSVHVNSMDEL 564 (721)
Q Consensus 535 ~~~~~~-----------~~-------------~~~------------------------~~~~~~--~V~sv~~sp~~~~ 564 (721)
...... .. +.+ ...+.. .+.+++|+|++..
T Consensus 110 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 110 ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred EEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE
Confidence 111000 00 000 001111 7899999999999
Q ss_pred EEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEE
Q 004969 565 FLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV 643 (721)
Q Consensus 565 lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl 643 (721)
+++++.||.|++||+++ ++.+..+.. |...|.+++|+|++ .++++++.|+.|++||+++++... .+........+
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~ 265 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLK--KYETDCPLNTA 265 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE--EEECSSCEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceee--eecCCCCceeE
Confidence 99999999999999998 788888886 99999999999999 799999999999999999986543 34444455589
Q ss_pred EEecCCCEEEEEeCCC--------------cEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 644 CFSPDDHYLLGKGSGT--------------SMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 644 ~fSpdg~~Lasgs~Dg--------------~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+|+|+++++++++.++ .+++||+. +.. +..|...|.+++|+|++ .+|++|+..
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~d 336 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-------TSYASGGED 336 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC-------CEEEEEcCC
Confidence 9999999999999888 89999987 333 45567899999999999 899999876
No 34
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=9.1e-27 Score=270.17 Aligned_cols=223 Identities=15% Similarity=0.236 Sum_probs=186.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi 528 (721)
.|++++|+| ++++||+|+.||+|+|||+.+++ ....+. +|.++|.+++|+ +++..|++++.+ +.|++||.
T Consensus 61 ~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~--~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 61 QTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIP--VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEE--CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTT
T ss_pred ceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeec--ccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEeeC
Confidence 599999999 99999999999999999997554 344454 899999999998 688999988865 57888885
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.. . ...+ ..|...|.+++|+|++. .+++++.|++|++||..+++....+.+ |...|.+++|+|+| .
T Consensus 137 ~~--~-~~~l--------~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg-~ 203 (611)
T 1nr0_A 137 GT--S-NGNL--------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDG-S 203 (611)
T ss_dssp CC--B-CBCC--------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTS-S
T ss_pred CC--C-ccee--------cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCC-C
Confidence 33 2 1111 23557899999999987 599999999999999999999999987 99999999999999 7
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEec-------CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc--------
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTAS-------SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP-------- 670 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~-------~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~-------- 670 (721)
++++|+.|++|++||+.+++.. ..+. +|.+.+ +++|+|+|++|++++.|++|++||++. +.
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~--~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKT--GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEE--EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEEEECCCcEEEEECCCCcEe--eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 9999999999999999988653 3332 577777 899999999999999999999999872 11
Q ss_pred --------------------------------------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 671 --------------------------------------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 671 --------------------------------------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.+|...|.+++|+|++ ..|++|+..
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-------~~l~s~s~D 345 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-------KTLFSADAE 345 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-------CEEEEEeCC
Confidence 12466789999999999 899999865
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=2.3e-26 Score=245.60 Aligned_cols=228 Identities=12% Similarity=0.137 Sum_probs=190.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+| +++++++|+.||.|++||+.+++ .+..+. +|...|.+++|+ +++++|++++.||.|++||+.+++
T Consensus 10 ~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 10 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTE
T ss_pred CeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCe
Confidence 589999999 99999999999999999999887 667776 899999999998 689999999999999999998754
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCCCcEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
... ......+...|.+++|+|++..+++++.|+.|++||++.++. ...+...|...|.+++|+|++ .++
T Consensus 86 ~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 157 (372)
T 1k8k_C 86 WKP-------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLL 157 (372)
T ss_dssp EEE-------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEE
T ss_pred eee-------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEE
Confidence 210 111234567899999999999999999999999999998763 444444589999999999998 799
Q ss_pred EEEECCCcEEEEECCC----------------CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc-
Q 004969 610 ATSSFDQDVKLWDLRQ----------------KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP- 670 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs----------------~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~- 670 (721)
++|+.||.|++||++. ........+..|...+ +++|+|++++|++++.||.|++||++ +..
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999999999652 1123456666777766 89999999999999999999999997 443
Q ss_pred --ccccccCeEEEEECCCCCcccccccEEEEec
Q 004969 671 --FRDFNMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 671 --l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
+..+...+.+++|+|++ .++++|+
T Consensus 238 ~~~~~~~~~v~~~~~~~~~-------~~l~~~~ 263 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITES-------SLVAAGH 263 (372)
T ss_dssp EEEECSSCCEEEEEEEETT-------EEEEEET
T ss_pred EEEccCCCCeEEEEEecCC-------CEEEEEe
Confidence 34556789999999999 7888873
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=8.6e-26 Score=237.05 Aligned_cols=228 Identities=15% Similarity=0.193 Sum_probs=191.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++.++++|+ ||.|++||+.++. ....+...+|...|.+++|+ ++++++++++.||.|++||+.++
T Consensus 53 ~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 53 VVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp CCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC
T ss_pred ceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCC
Confidence 589999999 999999999 9999999998765 33444444788999999998 68899999999999999999886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
+... ......+...|.+++|+|++..+++++.||.|++||+++++.+..+.. |...|.+++|+|++ ..+++
T Consensus 130 ~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~ 200 (337)
T 1gxr_A 130 TPRI-------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDG-TKLWT 200 (337)
T ss_dssp --EE-------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTS-SEEEE
T ss_pred Ccce-------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCC-CEEEE
Confidence 5311 111223556799999999999999999999999999999999999987 99999999999998 79999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSK 688 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~ 688 (721)
++.||.|++||+++++. ...........+++|+|+++++++++.++.|++||++... +..|...+.++.|+|++
T Consensus 201 ~~~dg~i~~~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 277 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG- 277 (337)
T ss_dssp EETTSEEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS-
T ss_pred EecCCcEEEEECCCCce--EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCC-
Confidence 99999999999998854 3334444445589999999999999999999999998443 44567789999999999
Q ss_pred cccccccEEEEecCC
Q 004969 689 SEIVKVNLLASTDHC 703 (721)
Q Consensus 689 ~~~v~v~lLASgs~~ 703 (721)
.+|++++..
T Consensus 278 ------~~l~~~~~d 286 (337)
T 1gxr_A 278 ------KWFVSTGKD 286 (337)
T ss_dssp ------SEEEEEETT
T ss_pred ------CEEEEecCC
Confidence 888888765
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=6.9e-27 Score=248.34 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=190.7
Q ss_pred CeEEEEEeCCC----CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSI----SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~d----g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+| + +.++++|+.||.|++||+.+++.+..+. +|...|.+++|+|.++.+|++|+.||+|++||+++
T Consensus 71 ~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 71 NFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 599999999 5 6799999999999999999999998887 89999999999955899999999999999999988
Q ss_pred CCCcccccccCcceeEe----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-----------------
Q 004969 531 MPPSIRGMHYGAGTVTF----DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----------------- 589 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~----~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~----------------- 589 (721)
++. ...+ .|...|.+++|+|++..+++++.||.|++||+++++....+.
T Consensus 148 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 148 DTL----------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ 217 (366)
T ss_dssp TEE----------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred CeE----------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence 543 2222 356789999999999999999999999999999875433221
Q ss_pred ----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc------------eeEEEecCCCCeE-EEEEe
Q 004969 590 ----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI------------QPCYTASSSKGNV-MVCFS 646 (721)
Q Consensus 590 ----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~------------~~~~~~~~~~~~v-sl~fS 646 (721)
..|...|.+++|+ + .++++++.|+.|++||+++... ..+..+..|...+ +++|+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred eeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 1288999999998 4 6999999999999999987643 3355566666666 89999
Q ss_pred cC--CCEEEEEeCCCcEEEEEcCCC--------ccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 647 PD--DHYLLGKGSGTSMFVQSLRGD--------PFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 647 pd--g~~Lasgs~Dg~I~VWDl~g~--------~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+ +++|++|+.||.|++||++.. .+..| ...|.+++|+|++ .+|++|+..
T Consensus 295 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~d 356 (366)
T 3k26_A 295 MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-------SILIAVCDD 356 (366)
T ss_dssp ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-------SEEEEEETT
T ss_pred CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC-------CeEEEEeCC
Confidence 99 999999999999999999842 24444 5789999999999 899999876
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=241.90 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=184.2
Q ss_pred CeEEEEEeCCC--CCEEEEEECCCeEEEEECCC-CeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHEN-ENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~t-g~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+|+. +.+|++|+.||.|++||+.+ +..+ ..+. +|...|++++|+ +++++|++|+.||+|++||+.+
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTT
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--cccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCC
Confidence 69999999943 69999999999999999997 5544 5555 799999999998 6899999999999999999998
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccC---------------
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDELFLASGYSKNIALYDINSGRRLQVFADMHK--------------- 593 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~--sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~--------------- 593 (721)
++. .....|...|.+++| ++++..+++++.||.|++||+++++.+..+.. +.
T Consensus 118 ~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 118 NQA----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIYPMAVVA 186 (368)
T ss_dssp TEE----------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC-SSCEEEEEEETTEEEEE
T ss_pred CCc----------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec-CCCceEEEecCCeeEEE
Confidence 543 234457788999999 88888999999999999999999887766653 22
Q ss_pred --------------------------CCeEEEEEcCCC---CcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCC----
Q 004969 594 --------------------------EHINVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKG---- 639 (721)
Q Consensus 594 --------------------------~~V~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~---- 639 (721)
..+.++.+.++. +..+++|+.||.|++||++.... .....+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 233444444433 12399999999999999998643 33455555553
Q ss_pred ---------eEEEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 640 ---------NVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 640 ---------~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+++|+|++++|++|+.||.|++||++. .. +..|...|.+++|+|++ ..||+|+..
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~s~d 336 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-------NIFAYASSY 336 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-------SCEEEEECC
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-------CeEEEEecc
Confidence 44899999999999999999999999983 32 45667899999999999 899999876
No 39
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=6.6e-26 Score=258.09 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=191.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||.|++||. +++.+..+. +|...|.+++|+ +++++|++++.|++|++||... +.
T Consensus 346 ~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~~~-~~- 418 (577)
T 2ymu_A 346 SVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG-QL- 418 (577)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTC-CE-
T ss_pred CEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEec--CCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCC-CE-
Confidence 589999999 9999999999999999996 467777776 889999999998 7899999999999999999643 21
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
. .....|...|++++|+|++..+++++.|+.|++||. +++.+..+.+ |...|.+++|+|++ .++++++.
T Consensus 419 ~--------~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-~~~~v~~~~~spd~-~~las~~~ 487 (577)
T 2ymu_A 419 L--------QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDG-QTIASASD 487 (577)
T ss_dssp E--------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTS-CEEEEEET
T ss_pred E--------EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC-CCCCEEEEEEcCCC-CEEEEEeC
Confidence 1 122346678999999999999999999999999996 5777888886 99999999999999 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCCcc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSKSE 690 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~ 690 (721)
|++|++||.. ++. +..+.+|...+ +++|+|+|++|++++.|+.|++||..+.. +.+|...|.+++|+|++
T Consensus 488 d~~i~iw~~~-~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg--- 561 (577)
T 2ymu_A 488 DKTVKLWNRN-GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG--- 561 (577)
T ss_dssp TSEEEEEETT-SCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS---
T ss_pred CCEEEEEcCC-CCE--EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC---
Confidence 9999999964 433 45667777777 89999999999999999999999988764 55678899999999999
Q ss_pred cccccEEEEecCC
Q 004969 691 IVKVNLLASTDHC 703 (721)
Q Consensus 691 ~v~v~lLASgs~~ 703 (721)
..|+|++..
T Consensus 562 ----~~l~s~~~D 570 (577)
T 2ymu_A 562 ----QTIASASSD 570 (577)
T ss_dssp ----SCEEEEETT
T ss_pred ----CEEEEEeCC
Confidence 888998865
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=2.2e-26 Score=251.08 Aligned_cols=236 Identities=8% Similarity=0.110 Sum_probs=188.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.+|++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++.+|++|+.||+|++||+++++..
T Consensus 141 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 141 EITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCcee
Confidence 699999999 89999999999999999999999888887 899999999998 68899999999999999999986542
Q ss_pred cccccc---Ccce---eEe----------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969 535 IRGMHY---GAGT---VTF----------DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV 598 (721)
Q Consensus 535 ~~~~~~---~~~~---~~~----------~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s 598 (721)
.. ... +... ..+ .+...+.+++|+|++..+++++.||.|++||+++++.+..+...|...|.+
T Consensus 217 ~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 217 HT-FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred EE-eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 11 111 1000 000 123456667778899999999999999999999999888887668999999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--------
Q 004969 599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-------- 669 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-------- 669 (721)
++|+|++..++++|+.||.|++||++++... +..+. ++...+...+.+++++|++++.|+.|++|++...
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 374 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE 374 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence 9999999449999999999999999987432 22333 3556664446678999999999999999998731
Q ss_pred -----cccccccCeEEEEECCCCCccccccc----EEEEecCC
Q 004969 670 -----PFRDFNMSILAAYTRPSSKSEIVKVN----LLASTDHC 703 (721)
Q Consensus 670 -----~l~~~~~~V~~v~fsP~~~~~~v~v~----lLASgs~~ 703 (721)
.+..+...|..++|+|++ . ++|+|+..
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~-------~~~g~l~a~g~~g 410 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDD-------ESNGEVLEVGKNN 410 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCS-------SSSCEEEEEETTT
T ss_pred ccCccEEccCCcceEEEEEccCC-------CCcceEEEEcCCc
Confidence 133446689999999999 6 77777653
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=5.1e-26 Score=243.87 Aligned_cols=193 Identities=14% Similarity=0.170 Sum_probs=169.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++.|+| ++ .+++|+.||+|++||+.+++.+..+. +|.+.|.+++|+ +++.++++|+.||+|++||++++..
T Consensus 145 ~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~- 218 (340)
T 1got_B 145 YLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC- 218 (340)
T ss_dssp CEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-
T ss_pred cEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEc--CCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCee-
Confidence 589999998 54 58999999999999999999988887 899999999998 6889999999999999999988543
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg 612 (721)
...+ .|...|.+++|+|++..+++++.||+|++||+++++.+..+.. .+...|.+++|+|+| .++++|
T Consensus 219 ---------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g 288 (340)
T 1got_B 219 ---------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAG 288 (340)
T ss_dssp ---------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEE
T ss_pred ---------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEE
Confidence 2222 3567799999999999999999999999999999998887762 133579999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
+.|+.|++||+.++.. ...+.+|...+ +++|+|+|.+|++|+.|+.|++||
T Consensus 289 ~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999998754 55667888887 899999999999999999999996
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=6.9e-26 Score=244.84 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=171.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|.+++|+| ++..+++|+.||+|++||+++++.+..+. +|...|.+++|+|. ++++|++|+.||+|++||+++++.
T Consensus 156 ~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 156 YLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFH--GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred cEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 589999999 88999999999999999999999998887 89999999999854 468999999999999999998654
Q ss_pred cccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEE
Q 004969 534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaS 611 (721)
...+ .|...|.+++|+|++..+++++.|++|++||+++++.+..+.. .+...+.+++|+|++ .++++
T Consensus 233 ----------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~ 301 (354)
T 2pbi_B 233 ----------VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-RLLFA 301 (354)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEE
T ss_pred ----------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEE
Confidence 1222 3567899999999999999999999999999999988877763 134578999999999 89999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
|+.|++|++||++++.. +..+.+|...+ +++|+|+|++|++|+.|+.|++|+
T Consensus 302 g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999998754 55667888887 899999999999999999999996
No 43
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=9.7e-26 Score=243.14 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=191.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-----------CCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----------FGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-----------~~H~~~V~sl~fsp~d~~~LaSgs~DGtV 523 (721)
.|++++|+|.+++++++|+.||.|++||+.++.....+.. .+|...|.+++|+|.++.++++++.||.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 5999999998889999999999999999998765433321 25899999999996588899999999999
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK 600 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~ 600 (721)
++||+.+++. ...+.+...+.++.+++.+. .+++++.|+.|++||+++++.+..+.+ |...|.+++
T Consensus 125 ~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~v~~~~ 193 (408)
T 4a11_B 125 KVWDTNTLQT----------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-HRQEILAVS 193 (408)
T ss_dssp EEEETTTTEE----------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-CCSCEEEEE
T ss_pred EEeeCCCCcc----------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-CCCcEEEEE
Confidence 9999998543 33445667789999988544 899999999999999999999999987 999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe---------------cCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA---------------SSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~---------------~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
|+|++..++++|+.||.|++||++++.. ....+ ..|...+ +++|+|+|++|++++.||.|++|
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999955899999999999999987642 12222 3455556 89999999999999999999999
Q ss_pred EcCC-Cc--------------------------------------------------ccccccCeEEEEECCCCCccccc
Q 004969 665 SLRG-DP--------------------------------------------------FRDFNMSILAAYTRPSSKSEIVK 693 (721)
Q Consensus 665 Dl~g-~~--------------------------------------------------l~~~~~~V~~v~fsP~~~~~~v~ 693 (721)
|++. .. +..|...|.+++|+|++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~------ 346 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF------ 346 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT------
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC------
Confidence 9862 11 13456789999999999
Q ss_pred ccEEEEecCC
Q 004969 694 VNLLASTDHC 703 (721)
Q Consensus 694 v~lLASgs~~ 703 (721)
.+|++|+..
T Consensus 347 -~~l~s~~~d 355 (408)
T 4a11_B 347 -QELYSGSRD 355 (408)
T ss_dssp -TEEEEEETT
T ss_pred -CEEEEECCC
Confidence 889999876
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-25 Score=246.47 Aligned_cols=225 Identities=14% Similarity=0.237 Sum_probs=194.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||.|++||+.+++.+..+. +|...|.+++|. +..+++|+.||.|++||++.....
T Consensus 136 ~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 136 YVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcce
Confidence 599999999 99999999999999999999999998887 899999999995 579999999999999999864432
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS- 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs- 613 (721)
. .....|...|.+++|+|++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|++..++++|+
T Consensus 210 ~--------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 210 I--------GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp E--------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECC
T ss_pred e--------eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecC
Confidence 1 12234667899999999999999999999999999999999999986 9999999999998878888876
Q ss_pred -CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcCCCc------ccccccCeEEEEEC
Q 004969 614 -FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG--SGTSMFVQSLRGDP------FRDFNMSILAAYTR 684 (721)
Q Consensus 614 -~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs--~Dg~I~VWDl~g~~------l~~~~~~V~~v~fs 684 (721)
.|+.|++||+++++. ...+..+....+++|+|+++++++++ .||.|++||+.... +..|...|.+++|+
T Consensus 281 s~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 281 TMDKQIHFWNAATGAR--VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp TTTCEEEEEETTTCCE--EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCE--EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 799999999999865 44444455555999999999999954 89999999987421 34567899999999
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
|++ ..|++|+..
T Consensus 359 ~dg-------~~l~s~~~d 370 (401)
T 4aez_A 359 PDG-------RILSTAASD 370 (401)
T ss_dssp TTS-------SEEEEECTT
T ss_pred CCC-------CEEEEEeCC
Confidence 999 899998876
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=4.1e-25 Score=231.87 Aligned_cols=224 Identities=11% Similarity=0.168 Sum_probs=190.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||.|++||+.+++........+|...|.+++|+ ++++++++++.||.|++||+++++.
T Consensus 99 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~- 175 (337)
T 1gxr_A 99 YIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTL- 175 (337)
T ss_dssp BEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred cEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-
Confidence 599999999 9999999999999999999988743333333888999999998 6889999999999999999987543
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
...+ .|...|.+++|+|++..+++++.||.|++||+++++.+..+. +...+.+++|+|++ ..+++++
T Consensus 176 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~ 243 (337)
T 1gxr_A 176 ---------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTG-EWLAVGM 243 (337)
T ss_dssp ---------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTS-SEEEEEE
T ss_pred ---------eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCC-CEEEEEc
Confidence 1222 356779999999999999999999999999999999988886 88899999999999 7999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Ccc--cccccCeEEEEECCCCCc
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPF--RDFNMSILAAYTRPSSKS 689 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l--~~~~~~V~~v~fsP~~~~ 689 (721)
.|+.|++||+++++. .....|...+ +++|+|++++|++++.||.|++|++.. ... ..+...+.++.|+|++
T Consensus 244 ~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-- 318 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD-- 318 (337)
T ss_dssp TTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS--
T ss_pred CCCcEEEEECCCCCe---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC--
Confidence 999999999998753 3455666666 899999999999999999999999983 332 2356789999999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
..|++++..
T Consensus 319 -----~~l~~~~~d 327 (337)
T 1gxr_A 319 -----KYIVTGSGD 327 (337)
T ss_dssp -----CEEEEEETT
T ss_pred -----CEEEEecCC
Confidence 888988865
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.5e-25 Score=263.45 Aligned_cols=227 Identities=18% Similarity=0.255 Sum_probs=187.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++++|+|.++++|++|+.||+|++|++.++ .....+. +|...|.+++|+ +++++|++|+.||+|++||+.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEECC
Confidence 59999999967789999999999999998753 3445555 899999999998 789999999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEEEcCCC-C
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHS-P 606 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~fsPdg-~ 606 (721)
++... .....|...|.+++|+|++..+++++.|++|++||........... .+|...|.+++|+|++ .
T Consensus 461 ~~~~~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 461 AGVST---------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp TTEEE---------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CCcce---------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 85431 1223466789999999999999999999999999987554433322 2488999999999986 2
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc--cccCeEEEE
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD--FNMSILAAY 682 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~--~~~~V~~v~ 682 (721)
..+++|+.|++|++||+++.+. ...+.+|.+.+ +++|+|+|++|++|+.||.|++||++ ++.+.. +...+.++.
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred ceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence 4899999999999999998754 55667888877 89999999999999999999999997 333332 245799999
Q ss_pred ECCCCCcccccccEEEEecC
Q 004969 683 TRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs~ 702 (721)
|+|++ .++++++.
T Consensus 610 ~sp~~-------~~l~~~~~ 622 (694)
T 3dm0_A 610 FSPNR-------YWLCAATE 622 (694)
T ss_dssp ECSSS-------SEEEEEET
T ss_pred EcCCC-------cEEEEEcC
Confidence 99998 66666653
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.5e-25 Score=263.47 Aligned_cols=227 Identities=15% Similarity=0.199 Sum_probs=189.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||+|+|||+.++.....+. +|...|.+++|+ +++.+|++|+.||+|++||.......
T Consensus 432 ~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~ 507 (694)
T 3dm0_A 432 FVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKY 507 (694)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcce
Confidence 599999999 99999999999999999999999988887 899999999998 78899999999999999998653210
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~--~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
.... ....|...|.+++|+|++ ..+++++.|++|++||+++++....+.+ |.+.|++++|+|++ .++++|
T Consensus 508 -~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg-~~l~sg 579 (694)
T 3dm0_A 508 -TISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDG-SLCASG 579 (694)
T ss_dssp -EECS-----STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEE
T ss_pred -eecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCC-CEEEEE
Confidence 0000 001355679999999986 5799999999999999999999999987 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-cccc-----------------
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF----------------- 674 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~----------------- 674 (721)
+.||+|++||+++++. +..+..+....+++|+|++.++++++ ++.|++||++... +..+
T Consensus 580 ~~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKK--LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp ETTSBCEEEETTTTEE--EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred eCCCeEEEEECCCCce--EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccc
Confidence 9999999999999843 55555555555999999999988776 6679999997432 1111
Q ss_pred -----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 675 -----NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 675 -----~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
...+.+++|+|++ ..|++|+..
T Consensus 657 ~~~~~~~~~~~l~~spdg-------~~l~sgs~D 683 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADG-------STLFSGYTD 683 (694)
T ss_dssp ----CCCCEEEEEECTTS-------SEEEEEETT
T ss_pred cCCceeEEeeeEEEcCCC-------CEEEEEcCC
Confidence 1136789999999 999999887
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=2e-25 Score=241.41 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=170.5
Q ss_pred CeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| ++ .++++|+.||.|+|||+.+++....+...+|...|.+++|+|.++.+|++++.||+|++||+.+...
T Consensus 75 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 75 RVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp CEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred CEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 599999999 66 9999999999999999999988888776689999999999954789999999999999999986221
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.....+ ..+...|.+++|+|++..+++++.|+.|++||+ +++.+..+.+ |...|.+++|+|++..++++|+
T Consensus 154 --~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 154 --QVFAKT-----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp --EEEECC-----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE
T ss_pred --EEEecc-----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEECCCCCCEEEEEe
Confidence 111110 123366999999999999999999999999999 5788888886 9999999999999944999999
Q ss_pred CCCcEEEEECCCCC--ceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969 614 FDQDVKLWDLRQKP--IQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 614 ~DgtIrIWDlrs~~--~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|++|++||+++.. ....... +|...+ +++|+| +|.+|++++.|+.|++||++
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999732 1223333 355555 999999 99999999999999999987
No 49
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=8.9e-26 Score=247.99 Aligned_cols=236 Identities=18% Similarity=0.274 Sum_probs=180.2
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecCCCC------------CCeEEEEEeeCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAM------------NSVLGLCWLKKY 510 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----------~i~~l~~~~H~------------~~V~sl~fsp~d 510 (721)
-.|++++|+| ++++||+|+.||.|+|||+.++. ....+. +|. ..|++++|+| +
T Consensus 29 ~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 29 DIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp GSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--CCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred CcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--cccccccccccccccCceEEEEEcC-C
Confidence 3699999999 99999999999999999999876 466666 787 8899999994 5
Q ss_pred C--CEEEEEeCCCeEEEEEcCCCCCccccc--ccC---------------------------cc--eeEeccCCCeEEEE
Q 004969 511 P--SKLIAGSDNGSLKLYDIRHMPPSIRGM--HYG---------------------------AG--TVTFDEFDQLTSVH 557 (721)
Q Consensus 511 ~--~~LaSgs~DGtVrIWDi~~~~~~~~~~--~~~---------------------------~~--~~~~~~~~~V~sv~ 557 (721)
+ ..|++++.||+|++||+.++....... ... .. .....|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 799999999999999997633210000 000 00 11124677899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCC-CcEEEE-------EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce
Q 004969 558 VNSMDELFLASGYSKNIALYDINS-GRRLQV-------FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ 629 (721)
Q Consensus 558 ~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~-------l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~ 629 (721)
|+|++..++++ .|+.|++||+++ ++.+.. +.+ |...|.+++|+|+++.++++|+.||+|++||++++...
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99999999988 899999999994 444443 334 99999999999998679999999999999999987541
Q ss_pred --eEEEecCCCC------------eE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCccc---cccc-------------
Q 004969 630 --PCYTASSSKG------------NV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDPFR---DFNM------------- 676 (721)
Q Consensus 630 --~~~~~~~~~~------------~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~l~---~~~~------------- 676 (721)
....+.++.. .+ +++|+|+|++|++++. +.|++||++ +.++. .|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 1344555553 44 9999999999999998 999999997 33333 2221
Q ss_pred --CeEEEEECCCCCcccccccEEEEecCC
Q 004969 677 --SILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 677 --~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+..++|+|++ ..|++|+..
T Consensus 342 i~~~~~~~~s~~~-------~~l~s~s~d 363 (447)
T 3dw8_B 342 IFDKFECCWNGSD-------SVVMTGSYN 363 (447)
T ss_dssp GGCCCCEEECTTS-------SEEEEECST
T ss_pred cccceEEEECCCC-------CEEEEeccC
Confidence 13348999999 888888865
No 50
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=3.4e-26 Score=249.24 Aligned_cols=206 Identities=19% Similarity=0.267 Sum_probs=173.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|.++.|+|.++..+++|+.||+|++||+.+++.+..+.. .+|...|.+++|++.+++++++|+.||+|++||++..
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence 5778899996677899999999999999999998887732 3789999999998778999999999999999999854
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc------cCCCeEEEEEcCCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM------HKEHINVVKFSNHS 605 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~------h~~~V~sI~fsPdg 605 (721)
...+. ....|...|.+++|+|++..+++++.||+|++||+++++.+..+... +...|.+++|+|+|
T Consensus 239 ~~~~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 239 SRAVR--------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp CCCCE--------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred CcceE--------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 33221 12246678999999999999999999999999999999998888641 12348999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEE--ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYT--ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~--~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
.++++|+.||.|++||+.+++...... ..+|.+.+ +++|+|+|.+|++|+.|+.|++|++.++
T Consensus 311 -~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 311 -RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred -CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 899999999999999998875432221 14677777 9999999999999999999999999854
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-26 Score=247.65 Aligned_cols=238 Identities=16% Similarity=0.278 Sum_probs=192.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+| ++.+|++|+.||.|++||+.+ .+.+..+. +|...|++++|+|.++.+|++++.||+|++||+.+
T Consensus 69 ~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 69 KFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred ceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 699999999 999999999999999999987 34666665 89999999999954489999999999999999998
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEcccc------CCCeEEEEEcC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMH------KEHINVVKFSN 603 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h------~~~V~sI~fsP 603 (721)
+.................|...|.+++|+|+ +..+++++.|+.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-TSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-CCCSSCCCCCEEEEEECS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-cccccccCCceEEEEECC
Confidence 6521100000000111245678999999998 67888889999999999999999998885 4 78999999999
Q ss_pred CCCcEEEEEECCC---cEEEEECCCCCceeEEEec-CCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC-CCc---ccc
Q 004969 604 HSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTAS-SSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR-GDP---FRD 673 (721)
Q Consensus 604 dg~~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~-~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~-g~~---l~~ 673 (721)
+++.++++++.|+ .|++||++++. .+...+. +|...+ +++|+| ++.+|++++.||.|++||++ +.. +..
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 9867999999999 99999999863 2234455 666666 899999 99999999999999999997 333 445
Q ss_pred cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 674 FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 674 ~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|...|.+++|+|+++ .+|++++..
T Consensus 304 ~~~~v~~~~~s~~~~------~~l~s~~~d 327 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAP------DLFACASFD 327 (416)
T ss_dssp SSSCCCCEEECTTCT------TEEEECCSS
T ss_pred CCCceEEEEECCCCC------CEEEEEecC
Confidence 677899999999873 477777765
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.6e-25 Score=235.48 Aligned_cols=203 Identities=13% Similarity=0.176 Sum_probs=164.7
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+|. ++.+|++|+.||+|+|||+.+++ .+..+. +|...|.+++|+|.. +.+|++|+.||+|++||++.
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee--cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 5999999862 48999999999999999999875 344444 789999999999542 78999999999999999987
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCc----EEEEEccccC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-------------DELFLASGYSKNIALYDINSGR----RLQVFADMHK 593 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-------------~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~ 593 (721)
+... .......|...|.+++|+|+ +..+++++.|++|++||+++++ ....+.+ |.
T Consensus 133 ~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~-H~ 204 (297)
T 2pm7_B 133 NGTT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HS 204 (297)
T ss_dssp SSCB-------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CS
T ss_pred CCce-------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC-CC
Confidence 5321 01223346678999999986 4689999999999999998876 5667776 99
Q ss_pred CCeEEEEEcCCC--CcEEEEEECCCcEEEEECCCCCce-eEEEe--cCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 594 EHINVVKFSNHS--PSIFATSSFDQDVKLWDLRQKPIQ-PCYTA--SSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 594 ~~V~sI~fsPdg--~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~--~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
..|.+++|+|++ +.+|++|+.|++|++||+++.... ....+ ..+...+ +++|+|+|++|++++.|+.|++|+..
T Consensus 205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999985 479999999999999999874311 11222 3455556 89999999999999999999999976
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=2.3e-25 Score=237.95 Aligned_cols=234 Identities=14% Similarity=0.065 Sum_probs=193.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||.|++||+.+++....+...+|...|.+++|+ +++.+|++|+.||.|++||+..+...
T Consensus 54 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 54 QVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp CEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred cccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 599999999 9999999999999999999999877766656899999999998 68899999999999999999886531
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEccccCCCe
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI------------------NSGRRLQVFADMHKEHI 596 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl------------------~s~~~v~~l~~~h~~~V 596 (721)
.. .......|...|.+++|+|++..+++++.||.|++||+ .+++.+..+.+ |...|
T Consensus 132 ~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 205 (372)
T 1k8k_C 132 WV-----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWV 205 (372)
T ss_dssp EE-----EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCE
T ss_pred ee-----eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeE
Confidence 00 00111235678999999999999999999999999995 46788888886 99999
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-------
Q 004969 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG------- 668 (721)
Q Consensus 597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g------- 668 (721)
.+++|+|++ .++++++.|+.|++||+++++. +..+..+...+ +++|+|++.++++| .|+.|++|+++.
T Consensus 206 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 206 HGVCFSANG-SRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp EEEEECSSS-SEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred EEEEECCCC-CEEEEEeCCCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 999999999 7999999999999999998865 45555666565 89999999999887 899999999875
Q ss_pred -------------------------------------Ccc-cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 669 -------------------------------------DPF-RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 669 -------------------------------------~~l-~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+ ..|...|.+++|+|... ....+|+||+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g---~~~~~l~s~~~D 351 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---AKCSQFCTTGMD 351 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT---TSCSEEEEEETT
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC---cceeeEEEecCC
Confidence 223 37788999999774430 011588888876
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=7e-26 Score=247.45 Aligned_cols=223 Identities=16% Similarity=0.204 Sum_probs=184.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|++++|+|.++.+|++|+.||+|+|||+.++ +.+..+. +|...|.+++|+|....+|++|+.||+|++||
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence 69999999988899999999999999999987 4566666 89999999999954447999999999999999
Q ss_pred cCCCCCcccccccCcceeEe---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-ccccCCC-eEEEEEc
Q 004969 528 IRHMPPSIRGMHYGAGTVTF---DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMHKEH-INVVKFS 602 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~---~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l-~~~h~~~-V~sI~fs 602 (721)
+.+++. ...+ .|...|.+++|+|++..+++++.||.|++||+++++.+..+ .+ |.+. +.++.|+
T Consensus 161 ~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 229 (402)
T 2aq5_A 161 VGTGAA----------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFV 229 (402)
T ss_dssp TTTTEE----------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS-SCSSSCCEEEEC
T ss_pred CCCCCc----------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC-CCCCcceEEEEc
Confidence 998543 2222 35678999999999999999999999999999999999998 54 7765 8999999
Q ss_pred CCCCcEEEEE---ECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCCCEEEE-EeCCCcEEEEEcCCCc-----cc
Q 004969 603 NHSPSIFATS---SFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLG-KGSGTSMFVQSLRGDP-----FR 672 (721)
Q Consensus 603 Pdg~~lLaSg---s~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg~~Las-gs~Dg~I~VWDl~g~~-----l~ 672 (721)
|++ .++++| +.|+.|++||+++... .............+++|+|++++|++ |+.||.|++||+.... +.
T Consensus 230 ~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 230 SEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp STT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 998 789888 7899999999998653 33444445555669999999999975 5579999999998332 33
Q ss_pred cc--ccCeEEEEECCCCCccc
Q 004969 673 DF--NMSILAAYTRPSSKSEI 691 (721)
Q Consensus 673 ~~--~~~V~~v~fsP~~~~~~ 691 (721)
.+ ...+.+++|+|++...+
T Consensus 309 ~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EECCSSCCSEEEECCGGGSCG
T ss_pred ccccCCcccceEEecccccce
Confidence 33 47899999999985443
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.3e-25 Score=239.06 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=193.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||.|++|| .+++.+..+. +|...|.+++|+ +++.+|++++.||.|++||+.+++..
T Consensus 110 ~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 110 QVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN--FHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC--CCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc--CCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEE
Confidence 699999999 999999999999999999 5677877776 889999999998 68899999999999999999875432
Q ss_pred cccccc----------------------------------------------CcceeEe-ccCCCeEEEEEecCCCEEEE
Q 004969 535 IRGMHY----------------------------------------------GAGTVTF-DEFDQLTSVHVNSMDELFLA 567 (721)
Q Consensus 535 ~~~~~~----------------------------------------------~~~~~~~-~~~~~V~sv~~sp~~~~lls 567 (721)
...... ......+ .|...|.+++|+|++..+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 110000 0001111 35677999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969 568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS 646 (721)
Q Consensus 568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS 646 (721)
++.|+.|++||+++++.+..+.+ |...|.+++|+|++ .+++++.|+.|++||+++++. ...+..+...+ +++|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL--LALSIVDGVPIFAGRIS 339 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE--EEEEECTTCCEEEEEEC
T ss_pred EcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE--eEecccCCccEEEEEEc
Confidence 99999999999999999999986 99999999999988 899999999999999998754 45555666666 89999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC-CC--------------------c---cccccc--CeEEEEECCCCCcccccccEEEEe
Q 004969 647 PDDHYLLGKGSGTSMFVQSLR-GD--------------------P---FRDFNM--SILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 647 pdg~~Lasgs~Dg~I~VWDl~-g~--------------------~---l~~~~~--~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
|++++|++++.||.|++||++ +. . +..+.. .|.++.|+|++ ..|++|
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~ 412 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-------NKISVA 412 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-------SEEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-------ceEEEE
Confidence 999999999999999999987 22 2 233434 89999999999 889888
Q ss_pred cCC
Q 004969 701 DHC 703 (721)
Q Consensus 701 s~~ 703 (721)
+..
T Consensus 413 ~~d 415 (425)
T 1r5m_A 413 YSL 415 (425)
T ss_dssp ESS
T ss_pred ecC
Confidence 866
No 56
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=9.2e-25 Score=227.99 Aligned_cols=235 Identities=11% Similarity=0.231 Sum_probs=187.0
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
++..+|+||+ + ++||+|. |++|+|||+.+|+.+..+..++|...|++++|+ +++++|++|+.||+|++||+++++.
T Consensus 26 ~y~~~l~WS~-~-~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 26 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ccceEEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCcee
Confidence 3567899999 5 4777765 999999999999999999888899999999998 7899999999999999999998654
Q ss_pred cccccccC--------------------------------cc-eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969 534 SIRGMHYG--------------------------------AG-TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (721)
Q Consensus 534 ~~~~~~~~--------------------------------~~-~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~ 580 (721)
.. ...++ .. .....|...+..+.+++.+..+++++.|+.|++||++
T Consensus 102 ~~-~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 102 LR-NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EE-EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EE-EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 21 11111 00 1122356678999999999999999999999999999
Q ss_pred CCcE----EEEEccccCCCeEEEEEcCCCCcEEE--EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 581 SGRR----LQVFADMHKEHINVVKFSNHSPSIFA--TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 581 s~~~----v~~l~~~h~~~V~sI~fsPdg~~lLa--Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
+++. ...... |.+.|.+++++|+++..+. +++.+++|++||.+.... ............+.|+|++..+++
T Consensus 181 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp CBTTBSCCSEEECC-CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCEEEEEEETTTTEEEE
T ss_pred CCcccccceeeecc-cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeeeeeeeecccccceEE
Confidence 8653 334443 8889999999999866654 566789999999998754 333344445558999999999887
Q ss_pred Ee--CCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 655 KG--SGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 655 gs--~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++ .|+.|++||++ +.. +.+|...|.+++|+|++ .+|||||..
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-------~~l~S~s~D 305 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-------ATVASAAAD 305 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-------CEEEEEecC
Confidence 65 78999999998 333 56778899999999999 899999976
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.1e-25 Score=249.28 Aligned_cols=236 Identities=21% Similarity=0.321 Sum_probs=189.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr 524 (721)
.|++++|+|+++.++++|+.||.|++|++.+ ......+. +|...|++++|+|....+|++|+.||+|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 4899999995478999999999999999976 45566666 88999999999954444999999999999
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC---cEEEEEccccCCCeEEEE
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVK 600 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~ 600 (721)
+||+..+........ .......|...|.+++|+| .+..+++++.||.|++||++++ +.+..+.. |...|++++
T Consensus 208 vwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~ 284 (430)
T 2xyi_A 208 LWDINATPKEHRVID--AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLS 284 (430)
T ss_dssp EEETTSCCBGGGEEE--CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEE
T ss_pred EEeCCCCCCCCceec--cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEE
Confidence 999988543111100 0111224667899999999 5678888889999999999987 57777775 999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC----------
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG---------- 668 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g---------- 668 (721)
|+|+++.++++|+.||+|++||+++.. .++..+..|...+ +++|+|+++ +|++++.||.|++||+..
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 999996789999999999999999843 3355666676666 899999995 689999999999999973
Q ss_pred -----Cc---ccccccCeEEEEECCCCCccccccc-EEEEecCC
Q 004969 669 -----DP---FRDFNMSILAAYTRPSSKSEIVKVN-LLASTDHC 703 (721)
Q Consensus 669 -----~~---l~~~~~~V~~v~fsP~~~~~~v~v~-lLASgs~~ 703 (721)
.. +.+|...|..++|+|++ + ++++++..
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~-------~~~l~s~s~d 400 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNE-------PWIICSVSED 400 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSS-------TTEEEEEETT
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCC-------CCEEEEEECC
Confidence 22 23456689999999999 6 88888866
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=4.2e-25 Score=240.92 Aligned_cols=225 Identities=13% Similarity=0.174 Sum_probs=181.6
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+....|+| +++++++|+.||.|++||+.+++....+. +|...|++++|+ +++++|++|+.||+|++||+.+++..
T Consensus 100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~- 174 (420)
T 3vl1_A 100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNP- 174 (420)
T ss_dssp EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETT--SSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCC-
T ss_pred eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecc--cccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCc-
Confidence 44456788 99999999999999999999998877765 899999999998 68899999999999999999986542
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--ccCCCeEEEE-------------
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVK------------- 600 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--~h~~~V~sI~------------- 600 (721)
.....|...|.+++|+|++..+++++.|+.|++||+++++.+..+.. .|...+.+++
T Consensus 175 --------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 175 --------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp --------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred --------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence 11224667899999999999999999999999999999999998874 2444555555
Q ss_pred --------EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC--
Q 004969 601 --------FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG-- 668 (721)
Q Consensus 601 --------fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g-- 668 (721)
|+|++ .++++|+.||.|++||++++...... ...|...+ +++|+|++. +|++|+.||.|++||++.
T Consensus 247 ~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 247 TSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred cCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 56777 79999999999999999987543222 23455555 999999999 999999999999999983
Q ss_pred Cc---ccc-cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 669 DP---FRD-FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 669 ~~---l~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+ +.. +...+..+.+ |++ .+|++|+..
T Consensus 325 ~~~~~~~~~~~~~v~~~~~-~~~-------~~l~s~~~d 355 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYF-AAG-------ALFVSSGFD 355 (420)
T ss_dssp SCSEEEEESTTSCEEEEEE-ETT-------EEEEEETTT
T ss_pred CchhhhhccCCCCceEEEe-CCC-------CEEEEecCC
Confidence 22 233 3456777755 566 788888765
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-26 Score=261.84 Aligned_cols=228 Identities=12% Similarity=0.078 Sum_probs=167.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEE----EEeecCCCCCCeEEEEEeeC-----CCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIV----SYIPSFGAMNSVLGLCWLKK-----YPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i----~~l~~~~H~~~V~sl~fsp~-----d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
++..+++|+.||+|+||++.+++.. ..+. +|.+.|.+++|+|. ++.+|++|+.||+|++||+.++....
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~--~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV--HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEE--ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEE--ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3445566778999999999877642 2233 67789999999964 35799999999999999998764310
Q ss_pred c-ccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEE--EEcCCCCcEEE
Q 004969 536 R-GMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVV--KFSNHSPSIFA 610 (721)
Q Consensus 536 ~-~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI--~fsPdg~~lLa 610 (721)
. ..........+ .|...|++++|+++ ..+++|+.||+|++||++++ .+...+.+ |...|.+| .|+|+++.+|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEE
Confidence 0 00000111122 35678999999875 58999999999999999976 44556776 99999999 56777546999
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C---cccccccCeEEEEECC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D---PFRDFNMSILAAYTRP 685 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~---~l~~~~~~V~~v~fsP 685 (721)
||+.|++|+|||++++++............+ +++|+|+++.+++++.|++|++||++. . .+.+|...|.+++|+|
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence 9999999999999987554333322221223 799999999999999999999999983 2 3567888999999999
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
++ +.||+|+..
T Consensus 408 ~g-------~~l~Sgs~D 418 (524)
T 2j04_B 408 LH-------PMVLAGSAD 418 (524)
T ss_dssp SC-------CBCEEEETT
T ss_pred CC-------CeEEEEECC
Confidence 99 888998876
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=5.5e-25 Score=260.99 Aligned_cols=226 Identities=19% Similarity=0.301 Sum_probs=194.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||.|+|||+.+++.+..+. +|..+|++++|+ +++++|++|+.||.|++||+.+++.
T Consensus 15 ~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~- 89 (814)
T 3mkq_A 15 RVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEK- 89 (814)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCE-
T ss_pred ceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcE-
Confidence 599999999 99999999999999999999999999888 899999999999 6889999999999999999988654
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcC-CCCcEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSN-HSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsP-dg~~lLaS 611 (721)
...+ .|...|.+++|+|++..+++++.||.|++||+.++ .....+.+ |...|.+++|+| ++ ..+++
T Consensus 90 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~-~~l~~ 158 (814)
T 3mkq_A 90 ---------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDP-STFAS 158 (814)
T ss_dssp ---------EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-CSSCEEEEEEETTEE-EEEEE
T ss_pred ---------EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-CCCcEEEEEEEcCCC-CEEEE
Confidence 2222 36678999999999999999999999999999987 66677776 999999999999 66 89999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec--CCCEEEEEeCCCcEEEEEcCCC-c---ccccccCeEEEEECC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP--DDHYLLGKGSGTSMFVQSLRGD-P---FRDFNMSILAAYTRP 685 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp--dg~~Lasgs~Dg~I~VWDl~g~-~---l~~~~~~V~~v~fsP 685 (721)
++.||+|++||++++................++|+| ++.++++++.||.|++||++.. . +..|...|.++.|+|
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 999999999999887554333322223444899999 9999999999999999998733 2 445677899999999
Q ss_pred CCCcccccccEEEEecCC
Q 004969 686 SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs~~ 703 (721)
++ +++++|+..
T Consensus 239 ~~-------~~l~~~~~d 249 (814)
T 3mkq_A 239 TL-------PIIISGSED 249 (814)
T ss_dssp SS-------SEEEEEETT
T ss_pred CC-------CEEEEEeCC
Confidence 99 888888865
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=236.92 Aligned_cols=233 Identities=15% Similarity=0.196 Sum_probs=186.6
Q ss_pred CeEEEEEeCCC--CCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEee-----CCCCEEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLK-----KYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp-----~d~~~LaSgs~DGtVrIW 526 (721)
.|++++|+|.. +.++++|+.||.|++||+.+++ .+..+. +|...|.+++|.+ +++++|++|+.||+|++|
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 59999999942 7999999999999999999887 777776 8999999997753 578899999999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEE----EecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH----VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~----~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs 602 (721)
|+.++.........+.. .....+.+++ |++++..+++++.||.|++||+++++...... |...|.+++|+
T Consensus 145 d~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~ 218 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQG----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFD 218 (357)
T ss_dssp CTTSCSSCSEEECCCTT----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEES
T ss_pred eCCCCCCcceeccccCC----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcC
Confidence 99987632222221111 0123678888 77899999999999999999999998866644 89999999999
Q ss_pred C---CCCcEEEEEECCCcEEEEECCCCCceeEE---EecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCC-----
Q 004969 603 N---HSPSIFATSSFDQDVKLWDLRQKPIQPCY---TASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGD----- 669 (721)
Q Consensus 603 P---dg~~lLaSgs~DgtIrIWDlrs~~~~~~~---~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~----- 669 (721)
| ++ ..+++|+.||.|++||++++.....+ ...+|...+ +++|+|+++ ++++++.||.|++||++..
T Consensus 219 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 219 RKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp CSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 9 77 79999999999999999876443322 233666666 899999999 8999999999999998621
Q ss_pred ------------------cccccccCeEEEEECCCCCcccccccEEE-EecCC
Q 004969 670 ------------------PFRDFNMSILAAYTRPSSKSEIVKVNLLA-STDHC 703 (721)
Q Consensus 670 ------------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLA-Sgs~~ 703 (721)
.+..|...|.+++|+|++ ..|+ +|+..
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~s~~~d 343 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-------RGLCVCSSFD 343 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-------TTEEEEEETT
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCC-------CeEEEEecCC
Confidence 134467789999999999 7776 67755
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=2.9e-24 Score=236.73 Aligned_cols=225 Identities=13% Similarity=0.236 Sum_probs=192.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++|+|+| ++++|++|+.||+|+|||+.+++.+..+. +|...|.+++|+ +..+++|+.|+.+++||.......
T Consensus 149 ~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 149 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE
T ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCceEEEeeC---CCEEEEEeCCCceeEeeeccccee
Confidence 599999999 99999999999999999999999998887 899999999885 679999999999999999875542
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc----EEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR----RLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
+.. ...|...+..+.+++++..+++++.|+.+++||..+++ .+..... |...|.+++|+|.++.+++
T Consensus 223 ~~~--------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~-~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 223 VAT--------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp EEE--------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC-CSSCEEEEEECTTCTTEEE
T ss_pred eEE--------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc-cCCceeeeeeCCCcccEEE
Confidence 221 22455678999999999999999999999999998765 3455555 9999999999999878887
Q ss_pred EE--ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcC-CCc---ccccccCeEEEE
Q 004969 611 TS--SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG--SGTSMFVQSLR-GDP---FRDFNMSILAAY 682 (721)
Q Consensus 611 Sg--s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs--~Dg~I~VWDl~-g~~---l~~~~~~V~~v~ 682 (721)
++ +.|++|++||++++.+ ...+..+...+++.|+|++..+++++ .|+.|+|||++ +.+ +.+|...|.+++
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~--~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~ 371 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371 (420)
T ss_dssp EEECTTTCEEEEEETTTTEE--EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEeecCCCEEEEEeCCcccc--ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 75 4799999999999854 55556677777999999999998875 68999999997 333 567788999999
Q ss_pred ECCCCCcccccccEEEEecCC
Q 004969 683 TRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 683 fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+|++ ..||||+..
T Consensus 372 ~spdg-------~~l~S~s~D 385 (420)
T 4gga_A 372 MSPDG-------ATVASAAAD 385 (420)
T ss_dssp ECTTS-------SCEEEEETT
T ss_pred EcCCC-------CEEEEEecC
Confidence 99999 899999976
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=247.33 Aligned_cols=232 Identities=16% Similarity=0.200 Sum_probs=179.7
Q ss_pred CeEEEEEeCCCC--CEEEEEECCCeEEEEECCCCeEEE---------------------------------------Eee
Q 004969 455 RPRQFEYHPSIS--CLMVFGTLDGEIVVVNHENENIVS---------------------------------------YIP 493 (721)
Q Consensus 455 ~V~~lafsP~dg--~~LasGs~DG~I~IWdl~tg~~i~---------------------------------------~l~ 493 (721)
.|++++|+| ++ .++++|+.||+|++||+.++.... .+
T Consensus 95 ~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (447)
T 3dw8_B 95 KINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF- 172 (447)
T ss_dssp CCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-
T ss_pred ceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-
Confidence 589999999 66 799999999999999987644321 11
Q ss_pred cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCC
Q 004969 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSK 572 (721)
Q Consensus 494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg 572 (721)
..+|...|++++|+ +++++|++| .||+|++||++............. .....|...|.+++|+|++ ..+++++.||
T Consensus 173 ~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 173 ANAHTYHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp CSCCSSCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred ccCCCcceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc-ccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 24799999999999 688999998 799999999985332111110000 0112456779999999998 8999999999
Q ss_pred cEEEEECCCCcE----EEEEccccCC------------CeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEec
Q 004969 573 NIALYDINSGRR----LQVFADMHKE------------HINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTAS 635 (721)
Q Consensus 573 ~IrlWDl~s~~~----v~~l~~~h~~------------~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~ 635 (721)
.|++||+++++. +..+.+ |.. .|.+++|+|+| .++++++. +.|++||+++ ++.. ..+.
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~--~~~~ 324 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPV--ETYQ 324 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECC-C-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCS--CCEE
T ss_pred eEEEEECcCCccccceeeEecc-CCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcccc--ceee
Confidence 999999999887 778876 765 89999999999 79999998 9999999997 5443 3334
Q ss_pred CCCCeE----------------EEEEecCCCEEEEEeCCCcEEEEEcCCCcc-c--------------------------
Q 004969 636 SSKGNV----------------MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF-R-------------------------- 672 (721)
Q Consensus 636 ~~~~~v----------------sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l-~-------------------------- 672 (721)
+|.... .++|+|+|++|++|+.||.|++||+..... .
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 444322 389999999999999999999999873321 1
Q ss_pred ---------ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 ---------DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 ---------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+...|..++|||++ ++||+++..
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~-------~~la~~~~~ 437 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKE-------NIIAVATTN 437 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSS-------SEEEEECSS
T ss_pred cccccccccccCCceeEEEECCCC-------CEEEEEecc
Confidence 234568899999999 999988764
No 64
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=2e-24 Score=245.92 Aligned_cols=221 Identities=18% Similarity=0.264 Sum_probs=188.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++++.||+|++||.... .+..+. +|...|.+++|+ +++.++++|+.||+|++||... +.
T Consensus 305 ~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-~~~~~~--~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~~~-~~- 377 (577)
T 2ymu_A 305 SVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-HLQTLT--GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QL- 377 (577)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTC-CE-
T ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEe--CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcCCC-CE-
Confidence 589999999 9999999999999999998754 445555 889999999998 7899999999999999999654 21
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
+ .....|...|.+++|+|++..+++++.|+.|++||. +++.+..+.+ |...|.+++|+|++ .++++++.
T Consensus 378 ~--------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~-~~l~~~~~ 446 (577)
T 2ymu_A 378 L--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDD-QTIASASD 446 (577)
T ss_dssp E--------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred E--------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCC-CEEEEEcC
Confidence 1 112245678999999999999999999999999995 5778888886 99999999999999 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCCcc
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSKSE 690 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~ 690 (721)
|++|++||.... ....+.+|...+ +++|+|++++|++++.|+.|++||..++. +..|...|.+++|+|++
T Consensus 447 d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg--- 520 (577)
T 2ymu_A 447 DKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG--- 520 (577)
T ss_dssp TSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTS---
T ss_pred CCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCC---
Confidence 999999997542 244566777777 89999999999999999999999988765 45567899999999999
Q ss_pred cccccEEEEecCC
Q 004969 691 IVKVNLLASTDHC 703 (721)
Q Consensus 691 ~v~v~lLASgs~~ 703 (721)
.+||+|+..
T Consensus 521 ----~~l~s~~~d 529 (577)
T 2ymu_A 521 ----QTIASASDD 529 (577)
T ss_dssp ----SCEEEEETT
T ss_pred ----CEEEEEECc
Confidence 788888865
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=4.8e-25 Score=232.95 Aligned_cols=222 Identities=12% Similarity=0.124 Sum_probs=183.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEEEc-C
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDI-R 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIWDi-~ 529 (721)
.|++++|+| ++.++++|+.||.|++|++.++. ....+. +|...|++++|+ +++. +|++|+.||.|++||+ .
T Consensus 13 ~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 13 YISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI-DNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE-ESSSEEEEEEETTSCEEEECSSS
T ss_pred cEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC-CCCCcEEEEEcCCCeEEEEEecc
Confidence 599999999 99999999999999999998876 233333 788999999999 5788 9999999999999999 7
Q ss_pred CCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CcEEEEEccccCCCeEE
Q 004969 530 HMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINS---------GRRLQVFADMHKEHINV 598 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---------~~~v~~l~~~h~~~V~s 598 (721)
++.. ..... |...|.+++|+| +..+++++.|+.|++||+++ ++++..+. |...|.+
T Consensus 89 ~~~~----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 155 (342)
T 1yfq_A 89 SPSF----------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFT 155 (342)
T ss_dssp SSSE----------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEE
T ss_pred CCce----------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEE
Confidence 7532 11123 567899999999 99999999999999999997 66666665 8899999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCC------
Q 004969 599 VKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGD------ 669 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~------ 669 (721)
++|+|++ +++++.|+.|++||+++ +..........+...+ +++|+| +++++++++.||.|++|+++..
T Consensus 156 ~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 156 MDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 9999875 99999999999999998 5433333334455555 899999 9999999999999999998743
Q ss_pred -c---cccccc---------CeEEEEECCCCCcccccccEEEEecCC
Q 004969 670 -P---FRDFNM---------SILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 670 -~---l~~~~~---------~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. +..|.. .|.+++|+|++ .+|++|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~d 272 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-------KFLYTAGSD 272 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTT-------CCEEEEETT
T ss_pred ccceeeecccccccccccceeEEEEEEcCCC-------CEEEEecCC
Confidence 1 334433 89999999999 788888865
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=247.02 Aligned_cols=209 Identities=12% Similarity=0.231 Sum_probs=162.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC--
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR-- 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~-- 529 (721)
.|++++|+|.++.+|++|+.||+|+|||+.+ +.........+|...|++++|+ +++.+|++|+.||+|++||+.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccc
Confidence 5999999997789999999999999999876 4321111111588999999998 688999999999999999995
Q ss_pred -CCCCcccccccC-cceeEec---cCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cCCCeEEEEE
Q 004969 530 -HMPPSIRGMHYG-AGTVTFD---EFDQLTSVH--VNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HKEHINVVKF 601 (721)
Q Consensus 530 -~~~~~~~~~~~~-~~~~~~~---~~~~V~sv~--~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~~~V~sI~f 601 (721)
.++. ......+ .....+. +...+.++. +++++..+++++.|+.|++||+++++.+..+.+. |...|++++|
T Consensus 144 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 222 (437)
T 3gre_A 144 QQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI 222 (437)
T ss_dssp EETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred cCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence 3332 1111111 1111111 445677777 5678899999999999999999999999999853 7899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe----cCCCEEEEEeCCCcEEEEEcC
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS----PDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS----pdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+|++ .++++|+.||+|++||+++++....+.. .+...+ +++|+ |++.+|++|+.||.|++||++
T Consensus 223 s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 223 DEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CTTS-CEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCC-CEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 9998 8999999999999999999754333333 344445 88555 568899999999999999997
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-23 Score=218.92 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=181.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP- 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~- 533 (721)
.|++++| | ++.++++|+.||.|++||+.++.....+. .|...|.+++|+ +++.++++|+.||.|++|++.....
T Consensus 20 ~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 20 DVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYD-SEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp CEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCC
Confidence 5999999 8 88999999999999999999998888877 788999999998 6899999999999999999876431
Q ss_pred -cccccccCcc-----------------------------ee-EeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 004969 534 -SIRGMHYGAG-----------------------------TV-TFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINS 581 (721)
Q Consensus 534 -~~~~~~~~~~-----------------------------~~-~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s 581 (721)
......++.. .. ...+...+.+++++| ++..+++++.||.|++|| .
T Consensus 95 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~ 172 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N 172 (313)
T ss_dssp CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c
Confidence 1111111110 00 113567799999988 889999999999999999 5
Q ss_pred CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS 660 (721)
Q Consensus 582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~ 660 (721)
++....+...|...+.+++|+|++ . +++++.||.|++||+++++. +..+.+|...+ +++|+|++ .+++++.||.
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 247 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRT 247 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSE
T ss_pred CceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCE
Confidence 667777776689999999999998 4 99999999999999998854 55566677776 89999999 5889999999
Q ss_pred EEEEEcC-CCc---ccccccCeEEEEECCCC
Q 004969 661 MFVQSLR-GDP---FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 661 I~VWDl~-g~~---l~~~~~~V~~v~fsP~~ 687 (721)
|++||++ +.. +..+...|.++.|+|++
T Consensus 248 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 248 VRIWSKENGSLKQVITLPAISIWSVDCMSNG 278 (313)
T ss_dssp EEEECTTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred EEEEECCCCceeEEEeccCceEEEEEEccCC
Confidence 9999987 333 34556789999999999
No 68
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=7.1e-25 Score=238.26 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=160.3
Q ss_pred CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
++++++|+| ||+++++++ .|++|+|||+++++.+..+. |...|.+|+|+ +++.++++++.+ .+++|+..++.
T Consensus 135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~---~~~~V~~v~fs-pdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---TRGEVKDLHFS-TDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE---CSSCCCEEEEC-TTSSEEEEECSS-CEEEEETTTCC
T ss_pred CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC---CCCceEEEEEc-cCCceEEeccce-eEEEEEeccCc
Confidence 589999999 999876544 78999999999999988874 66789999998 789999999866 45566665544
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcE----EEEEccccCCCeEEEEEcCC
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRR----LQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~----v~~l~~~h~~~V~sI~fsPd 604 (721)
.... .....|...|.+++|+|++..+++++.|+ .+++||+..+.. ...+.+ |...|++++|+|+
T Consensus 209 ~~~~-------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spd 280 (365)
T 4h5i_A 209 CIAR-------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMK 280 (365)
T ss_dssp EEEE-------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTT
T ss_pred ceee-------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCC
Confidence 3211 11123445689999999999999998776 688999887653 344555 8999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEE-ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYT-ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~-~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
| .+||+|+.|++|+|||++++++ +.. ..+|...+ +++|||||++|++|+.|++|+||++.
T Consensus 281 g-~~lasgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 281 G-ELAVLASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp S-CEEEEEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred C-CceEEEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9 8999999999999999999843 554 46788887 99999999999999999999999997
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.8e-24 Score=230.78 Aligned_cols=226 Identities=16% Similarity=0.214 Sum_probs=179.8
Q ss_pred CeEEEEEeCCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEeec--C------CCCCCeEEEEEeeCCCCEEE
Q 004969 455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNH----ENEN------IVSYIPS--F------GAMNSVLGLCWLKKYPSKLI 515 (721)
Q Consensus 455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl----~tg~------~i~~l~~--~------~H~~~V~sl~fsp~d~~~La 515 (721)
.|++++|+| ++. ++++|+.||.|++|++ .+++ ....+.. . +|.+.|++++|+ +++++|+
T Consensus 47 ~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~ 124 (425)
T 1r5m_A 47 NIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDGNSIV 124 (425)
T ss_dssp CCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTSSEEE
T ss_pred ceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCCCEEE
Confidence 489999999 788 9999999999999999 8887 4444432 1 267799999998 6899999
Q ss_pred EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-----
Q 004969 516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----- 590 (721)
Q Consensus 516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----- 590 (721)
+|+.||.|++||... .. . .....|...|.+++|+|++..+++++.|+.|++||+.+++.+..+..
T Consensus 125 ~~~~dg~i~i~~~~~-~~-~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 125 TGVENGELRLWNKTG-AL-L--------NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp EEETTSCEEEEETTS-CE-E--------EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EEeCCCeEEEEeCCC-Ce-e--------eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 999999999999332 21 1 11123567799999999999999999999999999987765543321
Q ss_pred --------------------------------------------------ccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969 591 --------------------------------------------------MHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (721)
Q Consensus 591 --------------------------------------------------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI 620 (721)
.|...|.+++|+|++ .++++++.|+.|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEE
Confidence 277889999999999 79999999999999
Q ss_pred EECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCccccccc
Q 004969 621 WDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKSEIVKVN 695 (721)
Q Consensus 621 WDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~~~v~v~ 695 (721)
||+++++. ...+..|...+ +++|+|++ ++++++.|+.|++||++. .. +..+...+.++.|+|++ .
T Consensus 274 ~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-------~ 343 (425)
T 1r5m_A 274 WHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG-------Q 343 (425)
T ss_dssp ECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-------S
T ss_pred EECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-------C
Confidence 99998754 44556666666 89999999 999999999999999973 32 34556789999999999 8
Q ss_pred EEEEecCC
Q 004969 696 LLASTDHC 703 (721)
Q Consensus 696 lLASgs~~ 703 (721)
+|++|+..
T Consensus 344 ~l~~~~~d 351 (425)
T 1r5m_A 344 KYAVAFMD 351 (425)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 88888865
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.93 E-value=3.2e-24 Score=225.51 Aligned_cols=225 Identities=18% Similarity=0.317 Sum_probs=192.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+| ++++|++|+.||.|++||+.+++.+..+. +|...|.+++|+ ++++++++|+.||+|++||+++++..
T Consensus 67 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 67 GISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCL 142 (312)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEE
Confidence 589999999 99999999999999999999999998887 889999999998 68899999999999999999886531
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....|..+|.+++|+|++..+++++.||.|++||+++++.+..+...+...+..++|+|++ .++++++.
T Consensus 143 ---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 212 (312)
T 4ery_A 143 ---------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATL 212 (312)
T ss_dssp ---------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEET
T ss_pred ---------EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcC
Confidence 11123556799999999999999999999999999999999888865577889999999999 79999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCe---EEEEEe-cCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGN---VMVCFS-PDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS 686 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~---vsl~fS-pdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~ 686 (721)
|+.|++||+++++. ...+.+|... +...++ +++.++++|+.||.|++||++.. .+.+|...|..++|+|+
T Consensus 213 d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 213 DNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp TTEEEEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 99999999998854 4444444432 234444 68899999999999999999843 24567789999999999
Q ss_pred CCcccccccEEEEecC
Q 004969 687 SKSEIVKVNLLASTDH 702 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~ 702 (721)
+ +++++++.
T Consensus 291 ~-------~~l~s~~~ 299 (312)
T 4ery_A 291 E-------NIIASAAL 299 (312)
T ss_dssp S-------SEEEEEEC
T ss_pred C-------CceEEEEc
Confidence 9 99999874
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.3e-24 Score=234.93 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=184.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCC----C---CEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKY----P---SKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d----~---~~LaSgs~DG 521 (721)
.|++++|+| ++|++|+.||+|++|++.+++ .+..+. +|...|++++|+ ++ + .+|++++.||
T Consensus 18 ~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 18 DIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVL-QAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEE-EEEETTTEEEEEEEEEETTS
T ss_pred CeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEe-cccccCCccccEEEEEcCCC
Confidence 599999999 899999999999999999887 666666 899999999999 45 7 8999999999
Q ss_pred eEEEEEcCCCCCcccccccCcceeEec-c-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------CcE
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFD-E-----FDQLTSVHVN----SMDEL-FLASGYSKNIALYDINS------GRR 584 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~-~-----~~~V~sv~~s----p~~~~-lls~g~Dg~IrlWDl~s------~~~ 584 (721)
.|++||+.++...... ....+. + ...|.+++|+ |++.. +++++.||.|++||+++ ++.
T Consensus 92 ~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 92 DLLFYRITREDETKKV-----IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp CEEEEEEEECTTTCCE-----EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred CEEEEEccCCcccccc-----cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 9999999886531000 011222 2 3779999999 99999 99999999999999998 665
Q ss_pred EE-----EEc------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC---C---CCeE-EEEEe
Q 004969 585 LQ-----VFA------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---S---KGNV-MVCFS 646 (721)
Q Consensus 585 v~-----~l~------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~---~---~~~v-sl~fS 646 (721)
+. .+. ..|...|.+++|+|++ ++++|+.||.|++||+++++. +..+.. | ...+ +++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEEC
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce--eEEEeccccccccCCccceEEEC
Confidence 55 553 2388999999999988 899999999999999998744 555555 5 5555 89999
Q ss_pred cCCCEEEEEeCC---CcEEEEEcC-CCc---ccc-------------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 647 PDDHYLLGKGSG---TSMFVQSLR-GDP---FRD-------------FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 647 pdg~~Lasgs~D---g~I~VWDl~-g~~---l~~-------------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|++.+|++++.| |.|++||++ +.. +.. |...|.++.|+|++ .+|++|+..
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d 312 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-------ETLCSAGWD 312 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-------SEEEEEETT
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC-------CEEEEEeCC
Confidence 999999999999 999999997 332 344 77889999999999 888988865
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=2.5e-24 Score=232.77 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=176.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|+|.++.++++|+.||.|++||+.+..........+|...|.+++|+ +++.+|++|+.||.|++||++. +.
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~~- 196 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLDG-HE- 196 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEETTS-CE-
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEECCC-CE-
Confidence 69999999977799999999999999999964443333334566889999998 7889999999999999999953 21
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC----CcEEEEEccccCCCeEEEEEcC-CCCcE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSN-HSPSI 608 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s----~~~v~~l~~~h~~~V~sI~fsP-dg~~l 608 (721)
. .....|...|.+++|+|++. .+++++.|+.|++||+++ +..+..+. |...|.+++|+| ++ .+
T Consensus 197 ~--------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~-~~ 265 (383)
T 3ei3_B 197 I--------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDS-TK 265 (383)
T ss_dssp E--------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTS-CE
T ss_pred E--------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCC-CE
Confidence 1 11224667899999999998 899999999999999998 66777773 999999999999 88 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEec-----CCC-----------CeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTAS-----SSK-----------GNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF 671 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-----~~~-----------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l 671 (721)
+++++.|+.|++||++++......... .+. ..+.++|+|+|++ +|+.||.|++||+. +..+
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~ 343 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV 343 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence 999999999999999987654433321 111 2224666666666 66789999999997 4433
Q ss_pred c---c--cccCeEEEEECCCCCcccccccEEEEec
Q 004969 672 R---D--FNMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 672 ~---~--~~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
. . +...+..++|+|++ .+||+|+
T Consensus 344 ~~l~~~~~~~~~~~~~~s~~g-------~~l~s~s 371 (383)
T 3ei3_B 344 HQLRDPNAAGIISLNKFSPTG-------DVLASGM 371 (383)
T ss_dssp EEECBTTBCSCCCEEEECTTS-------SEEEEEE
T ss_pred eeecCCCCCceEEEEEEecCc-------cEEEEec
Confidence 2 2 24566777999999 8999996
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=229.62 Aligned_cols=228 Identities=11% Similarity=0.191 Sum_probs=180.2
Q ss_pred CeEEEEEeCCCC-CEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEc
Q 004969 455 RPRQFEYHPSIS-CLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg-~~LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi 528 (721)
.|++++|+| ++ .++++|+. ||.|++||+.+++....... +|...|++++|+|.. +.+|++|+.||.|++||+
T Consensus 20 ~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 20 TVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp CEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred ceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 599999999 55 56667766 99999999998887655443 788999999999543 699999999999999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCC----CeE
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHV------NSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKE----HIN 597 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~------sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~----~V~ 597 (721)
.+++..... ...|...|.+++| +|++..+++++.||.|++||+++++ .+..+.. |.+ .+.
T Consensus 98 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~ 168 (357)
T 3i2n_A 98 EAPEMPVYS--------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCW 168 (357)
T ss_dssp TSCSSCSEE--------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEE
T ss_pred CCCCccEEE--------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceE
Confidence 986522221 1235567888855 6789999999999999999999887 6777764 443 899
Q ss_pred EEE----EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCC-
Q 004969 598 VVK----FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP---DDHYLLGKGSGTSMFVQSLRGD- 669 (721)
Q Consensus 598 sI~----fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp---dg~~Lasgs~Dg~I~VWDl~g~- 669 (721)
+++ |+|++ .++++++.||.|++||+++++. ...........+++|+| ++.++++++.||.|++||++..
T Consensus 169 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 169 TVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEEEEeccCCCC-CEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 998 67888 7999999999999999999754 33333333444999999 9999999999999999998722
Q ss_pred c---cc-----ccccCeEEEEECCCCCccccccc-EEEEecCC
Q 004969 670 P---FR-----DFNMSILAAYTRPSSKSEIVKVN-LLASTDHC 703 (721)
Q Consensus 670 ~---l~-----~~~~~V~~v~fsP~~~~~~v~v~-lLASgs~~ 703 (721)
. +. .|...|.+++|+|++ . ++++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~d 281 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQN-------RELFLTAGGA 281 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTE-------EEEEEEEETT
T ss_pred cccceeeeccCCCcCCEEEEEECCCC-------CcEEEEEeCC
Confidence 2 22 677899999999998 6 78888876
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=2e-24 Score=233.34 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=188.5
Q ss_pred CeEEEEEeCCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEeecCCC-----CCCeEEEEEee---CCCCE-
Q 004969 455 RPRQFEYHPSI----S---CLMVFGTLDGEIVVVNHENENI-----VSYIPSFGA-----MNSVLGLCWLK---KYPSK- 513 (721)
Q Consensus 455 ~V~~lafsP~d----g---~~LasGs~DG~I~IWdl~tg~~-----i~~l~~~~H-----~~~V~sl~fsp---~d~~~- 513 (721)
.|++++|+| + + .+|++|+.||.|++|++.+++. ...+. +| ...|.+++|++ +++..
T Consensus 64 ~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 64 GLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEE
T ss_pred cEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCceE
Confidence 599999999 7 8 9999999999999999998875 66666 66 58999999982 36778
Q ss_pred EEEEeCCCeEEEEEcCC------CCCcccccccCcceeE------eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 004969 514 LIAGSDNGSLKLYDIRH------MPPSIRGMHYGAGTVT------FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS 581 (721)
Q Consensus 514 LaSgs~DGtVrIWDi~~------~~~~~~~~~~~~~~~~------~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s 581 (721)
|++++.||.|++||+.+ +..... ....... ..+...|.+++|+|++ .+++++.||.|++||+++
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 216 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNW---SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 216 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCC---CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred EEEEeCCCcEEEEeCCccccccccceeec---cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC
Confidence 99999999999999987 433110 0000111 2356779999999999 999999999999999999
Q ss_pred CcEEEEEccc--c---CCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecC-------------CCCe
Q 004969 582 GRRLQVFADM--H---KEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASS-------------SKGN 640 (721)
Q Consensus 582 ~~~v~~l~~~--h---~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~-------------~~~~ 640 (721)
++.+..+... | ...|.+++|+|++ .++++++.| |.|++||+++++. +..+.. |...
T Consensus 217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 217 LRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSC
T ss_pred CceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCc
Confidence 9999888731 7 8999999999998 799999999 9999999998854 444554 6666
Q ss_pred E-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---cc------cc---------------ccCeEEEEECCCCCccccc-
Q 004969 641 V-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FR------DF---------------NMSILAAYTRPSSKSEIVK- 693 (721)
Q Consensus 641 v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~------~~---------------~~~V~~v~fsP~~~~~~v~- 693 (721)
+ +++|+|++++|++++.||.|++||++. .. +. .| ...|.+++|+|+++....+
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 6 899999999999999999999999973 22 34 45 6789999999997211110
Q ss_pred --ccEEEEecCC
Q 004969 694 --VNLLASTDHC 703 (721)
Q Consensus 694 --v~lLASgs~~ 703 (721)
-++|++|+..
T Consensus 374 ~~~~~l~s~~~d 385 (397)
T 1sq9_A 374 DLNESLCCVCLD 385 (397)
T ss_dssp TTSCEEEEEETT
T ss_pred cccceEEEecCC
Confidence 1378888765
No 75
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.4e-25 Score=261.86 Aligned_cols=230 Identities=17% Similarity=0.166 Sum_probs=190.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| +++++++|+.||+|+|||+.++ ..+..+. +|.++|++++|+|.. +++|++|+.||+|++||+.++
T Consensus 11 ~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 11 LIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred eeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 599999999 8999999999999999999844 4555555 899999999998432 899999999999999999885
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCC---
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNH--- 604 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPd--- 604 (721)
... .......|...|.+++|+|+ +..+++++.||.|++||++++. ....+.+ |...|.+++|+|.
T Consensus 88 ~~~-------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 88 RWS-------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE 159 (753)
T ss_dssp EEE-------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC--
T ss_pred ccc-------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-CCCceEEEEecCcccc
Confidence 420 11122346678999999999 9999999999999999999873 3445555 9999999999994
Q ss_pred ----------CCcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 004969 605 ----------SPSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPD---DHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 605 ----------g~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpd---g~~Lasgs~Dg~I~VWDl~g 668 (721)
+ ..+++|+.||+|++||++++.. .....+.+|...+ +++|+|+ +.++++|+.||.|++||++.
T Consensus 160 ~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 160 EDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp -------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5 7999999999999999988643 3345667787777 8999999 99999999999999999984
Q ss_pred C------c---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 669 D------P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 669 ~------~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. . ...+...|.+++|+|++ ..+++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg-------~~l~s~s~D 275 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD 275 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTT-------CCEEEECSS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCC-------CEEEEEcCC
Confidence 2 1 22356789999999999 888888775
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-24 Score=262.91 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=180.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.+||+|+.||+|+||+..+++....+ .|..+|.+++|+| +.+|++++.|++|++||+.+++.
T Consensus 19 ~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~---~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~- 91 (902)
T 2oaj_A 19 KPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKL---EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKV- 91 (902)
T ss_dssp CEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEEC---SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSE-
T ss_pred CcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEc---CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcE-
Confidence 599999999 9999999999999999999887766554 5778999999995 67999999999999999998653
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEccccCCCeEEEEEcC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-----------QVFADMHKEHINVVKFSN 603 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v-----------~~l~~~h~~~V~sI~fsP 603 (721)
...+.+...|++++|+|++.++++|+.||+|++||+++++.. ..+. +|.+.|.+++|+|
T Consensus 92 ---------~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp 161 (902)
T 2oaj_A 92 ---------LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNP 161 (902)
T ss_dssp ---------EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEET
T ss_pred ---------EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEcc
Confidence 233446678999999999999999999999999999988764 1223 3889999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecCC------------------CCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS------------------KGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~------------------~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
++...+++|+.||+| +||+++++.. ..+..+ ...+ +++|+|+|.+|++|+.||.|++|
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIK--QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEE--EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceE--EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 755789999999999 9999998543 333333 3444 99999999999999999999999
Q ss_pred EcC-CCccc--c-------------------cccCeEEEEECC----CCCcccccccEEEEecCC
Q 004969 665 SLR-GDPFR--D-------------------FNMSILAAYTRP----SSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 665 Dl~-g~~l~--~-------------------~~~~V~~v~fsP----~~~~~~v~v~lLASgs~~ 703 (721)
|++ ++.+. . +...|.+++|+| ++. .++++|+..
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~------~ll~sg~~~ 297 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT------SLLISHKSI 297 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE------EEEEEEECS
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC------EEEEeCCCC
Confidence 997 44322 1 133699999954 431 467777543
No 77
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-25 Score=242.84 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=186.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|++++|+|+++.++++|+.||.|++||+.+++ ....+ ...+|...|.+++|+|..+.++++++.||.|++||
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 589999999448999999999999999999876 32222 12378899999999954488999999999999999
Q ss_pred cCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCC---cEEEEECCCC-cEEEEEc-cccCCCeEEEEE
Q 004969 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSK---NIALYDINSG-RRLQVFA-DMHKEHINVVKF 601 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg---~IrlWDl~s~-~~v~~l~-~~h~~~V~sI~f 601 (721)
+++++.... ...+.. ...+...|.+++|+|++ ..+++++.|+ .|++||++++ +++..+. + |...|.+++|
T Consensus 195 ~~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~ 270 (416)
T 2pm9_A 195 LKAKKEVIH-LSYTSP--NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG-HQKGILSLDW 270 (416)
T ss_dssp TTTTEEEEE-ECCCCC--SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-CSSCEEEEEE
T ss_pred CCCCCcceE-Eecccc--ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-ccCceeEEEe
Confidence 988543111 110000 00115679999999997 5788888888 9999999986 5667776 5 9999999999
Q ss_pred cC-CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCcc-c---c-
Q 004969 602 SN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDPF-R---D- 673 (721)
Q Consensus 602 sP-dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l-~---~- 673 (721)
+| ++ .++++++.||+|++||+++++. +..+.+|...+ +++|+|++ .+|++++.|+.|++|++..... . .
T Consensus 271 s~~~~-~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 271 CHQDE-HLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp CSSCS-SCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred CCCCC-CeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence 99 66 8999999999999999998854 55666777766 89999999 8999999999999999973221 0 0
Q ss_pred ----------------------------------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 674 ----------------------------------FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 674 ----------------------------------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+...+.+++|+|++ .+||+|+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~la~~~~d 404 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-------KLVQITPDG 404 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-------EEECBCTTS
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-------eEEEEeCCC
Confidence 34566788999999 899999865
No 78
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-25 Score=255.04 Aligned_cols=218 Identities=9% Similarity=0.075 Sum_probs=175.1
Q ss_pred CeEEEEEeCC-----CCCEEEEEECCCeEEEEECCCCeEE-----------EEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969 455 RPRQFEYHPS-----ISCLMVFGTLDGEIVVVNHENENIV-----------SYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518 (721)
Q Consensus 455 ~V~~lafsP~-----dg~~LasGs~DG~I~IWdl~tg~~i-----------~~l~~~~H~~~V~sl~fsp~d~~~LaSgs 518 (721)
.|++++|+|. ++.+||+|+.||+|+|||+.++... ..+. +|...|++++|++ +..|++|+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~--~h~~~v~sv~~s~--~~~lasgs 284 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS--LADSLITTFDFLS--PTTVVCGF 284 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC--CTTTCEEEEEESS--SSEEEEEE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE--cCCCCEEEEEecC--CCeEEEEe
Confidence 4899999993 2579999999999999999876421 2333 7899999999984 35899999
Q ss_pred CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEE--EEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCC-
Q 004969 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSV--HVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKE- 594 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv--~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~- 594 (721)
.||+|++||++++.... .....|...|.++ .|++++ ..+++++.|++|+|||+++++.+..+.+ |..
T Consensus 285 ~DgtV~lWD~~~~~~~~--------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-~~~~ 355 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPS--------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-RFRG 355 (524)
T ss_dssp TTSEEEEEETTBCSSCS--------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE-ECSC
T ss_pred CCCEEEEEECCCCCCce--------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc-cccc
Confidence 99999999998753311 1122466789999 466666 7899999999999999999887777765 543
Q ss_pred -CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969 595 -HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR 672 (721)
Q Consensus 595 -~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~ 672 (721)
.|.+++|+|++ ..+++++.|++|++||++++.+. ..+.+|.+.+ +++|+|+|++|++|+.||+|++||+.++.+.
T Consensus 356 ~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~--~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 356 SNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV--HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp CSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC--EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred CcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc--eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 58899999998 68999999999999999997653 3455677777 9999999999999999999999999866555
Q ss_pred cccc--------CeEEEEECCCCC
Q 004969 673 DFNM--------SILAAYTRPSSK 688 (721)
Q Consensus 673 ~~~~--------~V~~v~fsP~~~ 688 (721)
.+.. .+..++|+|++.
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp CC------CCCCEEEECBCCSSSC
T ss_pred ccccCccceeeeEEEEeccCCCCC
Confidence 4421 467899999983
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=1.2e-23 Score=233.43 Aligned_cols=229 Identities=16% Similarity=0.245 Sum_probs=186.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| ++ ++++|+.||+|++||+.+++.+..+. +|...|.+++|++ +++.++++|+.||+|++||+.++..
T Consensus 164 ~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 164 GVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp CEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 699999999 55 99999999999999999999988887 8999999999986 4668999999999999999998654
Q ss_pred cccccccC------------c--ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 534 SIRGMHYG------------A--GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 534 ~~~~~~~~------------~--~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
........ . ......|...|.++ ++++..+++++.||.|++||+++++.+..+.+ |...|.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~ 316 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYST 316 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEE
Confidence 21110000 0 11122344566666 46889999999999999999999999999987 99999999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc--cc-ccc
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP--FR-DFN 675 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l~-~~~ 675 (721)
+|+|++ ..+++|+.||+|++||+++++ .+..+.+|...+ +++|+ +.++++|+.||.|++||++... .. .+.
T Consensus 317 ~~~~~~-~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 317 IYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp EEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 999999 799999999999999999884 466777888877 78886 6899999999999999998322 11 234
Q ss_pred cCeEEEEECCCCCcccccccEEEEecC
Q 004969 676 MSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 676 ~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
..+..+.|+|++ .++++|+.
T Consensus 392 ~~~~~~~~~~~~-------~~l~~~~d 411 (464)
T 3v7d_B 392 NLSAITTFYVSD-------NILVSGSE 411 (464)
T ss_dssp TCCCEEEEEECS-------SEEEEEET
T ss_pred CCccEEEEEeCC-------CEEEEecC
Confidence 567778999999 88888873
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-24 Score=228.05 Aligned_cols=205 Identities=13% Similarity=0.170 Sum_probs=166.7
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.|++++|+|. ++.+|++|+.||.|++||+.+++........+|...|.+++|+|.. +.++++++.||.|++||+....
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 5999999972 2899999999999999999998733333334889999999999432 8899999999999999998864
Q ss_pred CcccccccCcceeEeccCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCCc----EEEEEccccCCC
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNS-------------MDELFLASGYSKNIALYDINSGR----RLQVFADMHKEH 595 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp-------------~~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~ 595 (721)
.. .......|...|.+++|+| ++..+++++.||.|++||++++. .+..+.+ |...
T Consensus 137 ~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h~~~ 208 (379)
T 3jrp_A 137 TT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDW 208 (379)
T ss_dssp CC-------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSC
T ss_pred ce-------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-ccCc
Confidence 31 1122335667899999999 58999999999999999998764 4456665 9999
Q ss_pred eEEEEEcCCC--CcEEEEEECCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 596 INVVKFSNHS--PSIFATSSFDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 596 V~sI~fsPdg--~~lLaSgs~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|.+++|+|++ +.++++++.||.|++||++++... .......+...+ +++|+|+|++|++++.||.|++|++.
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999993 389999999999999999986422 222223355555 89999999999999999999999987
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-25 Score=235.45 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=170.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccC-cc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AG 543 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-~~ 543 (721)
++.++++|+.||+|++||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+.............. ..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 67899999999999999999999888776 35677888874 3 9999999999999887522111111111 11
Q ss_pred eeEeccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969 544 TVTFDEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW 621 (721)
Q Consensus 544 ~~~~~~~~~V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW 621 (721)
.....|..+|.+++|+| ++..+++++.||+|++||+++++.+......|...+.+++|+|++ .++++|+.||.|++|
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVY 197 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence 22234557799999999 999999999999999999999999877765467789999999999 899999999999999
Q ss_pred ECCCCCceeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-cc---cc---cccCeE--EEEECCCCCcc
Q 004969 622 DLRQKPIQPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF---RD---FNMSIL--AAYTRPSSKSE 690 (721)
Q Consensus 622 Dlrs~~~~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l---~~---~~~~V~--~v~fsP~~~~~ 690 (721)
|+++++.. ...+.. |...+ +++|+|+|.+|++++ ++.|++||++.. .. .. +...+. +++|+|++
T Consensus 198 d~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 272 (343)
T 3lrv_A 198 NLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG--- 272 (343)
T ss_dssp ESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS---
T ss_pred ECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC---
Confidence 99998653 134555 77777 999999999999999 559999999832 22 22 113333 59999999
Q ss_pred cccccEEEEecC
Q 004969 691 IVKVNLLASTDH 702 (721)
Q Consensus 691 ~v~v~lLASgs~ 702 (721)
..|++|+.
T Consensus 273 ----~~l~~~s~ 280 (343)
T 3lrv_A 273 ----KNMIAYSN 280 (343)
T ss_dssp ----SEEEEEET
T ss_pred ----CEEEEecC
Confidence 88888665
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.2e-24 Score=231.10 Aligned_cols=228 Identities=12% Similarity=0.185 Sum_probs=182.7
Q ss_pred CeEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCC---CCEEEEEeCCCeEEE
Q 004969 455 RPRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKY---PSKLIAGSDNGSLKL 525 (721)
Q Consensus 455 ~V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d---~~~LaSgs~DGtVrI 525 (721)
.|++++|+|. ....+++++.+|.|++||+.+++.+..+.. ..|...|++++|+|.. +.+|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 6999999983 356677777778999999998877666553 2367889999999532 569999999999999
Q ss_pred EEcCCCCCcccccccCcceeEe-ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEE---ccccCCCeEEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVF---ADMHKEHINVVK 600 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l---~~~h~~~V~sI~ 600 (721)
||+.+++. ...+ .|...|.+++|+| ++..+++++.||.|++||+++++.+..+ .+ |...|.+++
T Consensus 100 ~d~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~ 168 (366)
T 3k26_A 100 INPITMQC----------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSAD 168 (366)
T ss_dssp ECTTTCCE----------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEE
T ss_pred EEchhceE----------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEE
Confidence 99988653 2223 3667899999999 8899999999999999999999999988 44 999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCcee--------------------------EEEecCCCCeE-EEEEecCCCEEE
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQP--------------------------CYTASSSKGNV-MVCFSPDDHYLL 653 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--------------------------~~~~~~~~~~v-sl~fSpdg~~La 653 (721)
|+|++ .++++++.||.|++||+++++... ......|...+ +++|+ +++++
T Consensus 169 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 169 YDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp ECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred ECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 99998 799999999999999999753321 11222356666 89998 78999
Q ss_pred EEeCCCcEEEEEcCCCc------------------ccccccCeEEEEECCC--CCcccccccEEEEecCC
Q 004969 654 GKGSGTSMFVQSLRGDP------------------FRDFNMSILAAYTRPS--SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 654 sgs~Dg~I~VWDl~g~~------------------l~~~~~~V~~v~fsP~--~~~~~v~v~lLASgs~~ 703 (721)
+++.||.|++||++... +..|...|.+++|+|+ + .+|++|+..
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------~~l~~~~~d 308 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-------KMLALGNQV 308 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-------SEEEEECTT
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-------cEEEEEecC
Confidence 99999999999987321 1233456777888888 8 889988776
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=8.8e-24 Score=263.11 Aligned_cols=227 Identities=15% Similarity=0.172 Sum_probs=194.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| +++++++|+.||+|++||+.+++.+..+. +|.+.|++++|+ ++++++++|+.||+|++||+.+++..
T Consensus 617 ~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 617 AVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceE
Confidence 699999999 99999999999999999999999998887 899999999998 78899999999999999999986541
Q ss_pred ccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
.....|...|.+++|+|+ +..+++++.|+.|++||+++++.+..+.+ |...|.+++|+|++ .++++|
T Consensus 693 ---------~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~sp~~-~~l~s~ 761 (1249)
T 3sfz_A 693 ---------HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDD-ELLASC 761 (1249)
T ss_dssp ---------EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-CSSCEEEEEECSST-TEEEEE
T ss_pred ---------EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-CCCCEEEEEEecCC-CEEEEE
Confidence 111245678999999994 55788899999999999999999999987 99999999999999 799999
Q ss_pred ECCCcEEEEECCCCCceeEEE-----------------------------------------------------ecCCCC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYT-----------------------------------------------------ASSSKG 639 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~-----------------------------------------------------~~~~~~ 639 (721)
+.||+|++||++++....... ..+|..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence 999999999997753221111 113444
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+ +++|+|++.++++++.||.|++|++... .+..|...|.+++|+|++ ..+++++..
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-------~~l~s~s~d 903 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-------SSFLTASDD 903 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-------CEEEEEeCC
Confidence 45 8999999999999999999999999833 245677899999999999 888888876
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=4.9e-24 Score=231.61 Aligned_cols=186 Identities=6% Similarity=0.063 Sum_probs=148.8
Q ss_pred CCeEEEEEeeCCCCEEEEE--eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969 499 NSVLGLCWLKKYPSKLIAG--SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL 576 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSg--s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl 576 (721)
..+.+++|+ +++++++++ +.|++|+|||+.+++. ...+.+...|.+++|+|++..+++++. +.+++
T Consensus 134 ~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~----------~~~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~ 201 (365)
T 4h5i_A 134 DYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTE----------KFEIETRGEVKDLHFSTDGKVVAYITG-SSLEV 201 (365)
T ss_dssp CCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEE----------EEEEECSSCCCEEEECTTSSEEEEECS-SCEEE
T ss_pred cCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcE----------EEEeCCCCceEEEEEccCCceEEeccc-eeEEE
Confidence 447789998 688887654 4789999999998543 344567778999999999999888875 55777
Q ss_pred EECCCCcEEEEE-ccccCCCeEEEEEcCCCCcEEEEEECCC----cEEEEECCCCCcee--EEEecCCCCeE-EEEEecC
Q 004969 577 YDINSGRRLQVF-ADMHKEHINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPD 648 (721)
Q Consensus 577 WDl~s~~~v~~l-~~~h~~~V~sI~fsPdg~~lLaSgs~Dg----tIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpd 648 (721)
|+..+++.+... ...|...|.+++|+|++ ..+++++.|+ .+++||+....... ...+.+|...+ +++|+||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence 777777765433 33488899999999999 7899998887 68899988764322 34566777766 8999999
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969 649 DHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCD 704 (721)
Q Consensus 649 g~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ 704 (721)
|++||+|+.|+.|+|||++ +++ +..|...|.+++|+|++ .+|||||...
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-------~~laS~S~D~ 334 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-------TYVASVSAAN 334 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-------CEEEEEETTS
T ss_pred CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-------CEEEEEeCCC
Confidence 9999999999999999997 443 34678899999999999 9999999873
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=6.3e-25 Score=236.32 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=154.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++++|++|+.||+|++||+.++. ....+. +|...|++++|+ +++++|++|+.||+|++||++++
T Consensus 57 ~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 57 IVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL--RLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp CEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECC--CCSSCEEEEECC-TTSSCCEEEESSSCEEECCC---
T ss_pred eEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEec--ccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCc
Confidence 699999999 89999999999999999999877 344444 899999999998 68899999999999999999886
Q ss_pred CCcccccccCcceeEe-c-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECC------------------CCcEEEEEccc
Q 004969 532 PPSIRGMHYGAGTVTF-D-EFDQLTSVHVNSMDELFLASGYSKNIALYDIN------------------SGRRLQVFADM 591 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~-~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~------------------s~~~v~~l~~~ 591 (721)
.... ....+ . |...|.+++|+|++..+++++.|+.|++||++ .++.+..+ +
T Consensus 133 ~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 203 (377)
T 3dwl_C 133 NDWW-------VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P- 203 (377)
T ss_dssp --CC-------CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C-
T ss_pred ccce-------eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c-
Confidence 5200 01112 2 66789999999999999999999999999985 34566666 4
Q ss_pred cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee--EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
|...|.+++|+|++ .++++++.||+|++||++++...+ +..+.+|...+ +++|+|+|++|++|+.++.+ +|+..
T Consensus 204 ~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 204 SGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999999999999 799999999999999999886521 44556677766 89999999999988765555 77654
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=2.6e-24 Score=235.00 Aligned_cols=224 Identities=16% Similarity=0.270 Sum_probs=176.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI----VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~----i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
...++++|....++++|+.||.|+||++..... +..+ .+|.+.|++++|+|.++++|++|+.||+|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 445888884334555688999999999965432 2223 3899999999999548899999999999999999886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEE--ccccCCCeEEEEEcCCCCcE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l--~~~h~~~V~sI~fsPdg~~l 608 (721)
...... . ........|...|.+++|+|++ ..+++++.||.|++||+++++.+..+ .+ |...|.+++|+|++ .+
T Consensus 115 ~~~~~~-~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~ 190 (402)
T 2aq5_A 115 GLVLPL-R-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDG-AL 190 (402)
T ss_dssp CCSSCB-C-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-CCSCEEEEEECTTS-SC
T ss_pred CCcccc-C-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-CCCceEEEEECCCC-CE
Confidence 431100 0 0111223466789999999998 68999999999999999999999999 55 99999999999998 79
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEe-cCCCCe--EEEEEecCCCEEEEE---eCCCcEEEEEcCC-Cc-cc----cccc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGN--VMVCFSPDDHYLLGK---GSGTSMFVQSLRG-DP-FR----DFNM 676 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~-~~~~~~--vsl~fSpdg~~Lasg---s~Dg~I~VWDl~g-~~-l~----~~~~ 676 (721)
+++++.||.|++||+++++. +..+ ..|.+. .++.|+|++.++++| +.|+.|++||++. .. +. .+..
T Consensus 191 l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 268 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS 268 (402)
T ss_dssp EEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred EEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC
Confidence 99999999999999999754 4444 455543 489999999999999 7899999999983 21 11 3456
Q ss_pred CeEEEEECCCC
Q 004969 677 SILAAYTRPSS 687 (721)
Q Consensus 677 ~V~~v~fsP~~ 687 (721)
.+..+.|+|++
T Consensus 269 ~v~~~~~s~~~ 279 (402)
T 2aq5_A 269 GVLLPFFDPDT 279 (402)
T ss_dssp SCEEEEEETTT
T ss_pred ceeEEEEcCCC
Confidence 79999999999
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=1.5e-24 Score=240.42 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=175.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++|+|+|.++.+|++|+.||+|++||++++..........+...+.+++|+ +++.+|++|+.||+|++||+++...
T Consensus 166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~~~~- 243 (435)
T 4e54_B 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDGKEL- 243 (435)
T ss_dssp CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSSCBC-
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCccee-
Confidence 69999999978899999999999999999877655555444555678899998 7899999999999999999976321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.. ...|...|.+++|+|+++ .+++++.|+.|++||+++++....+. .+|...|++++|+|+| .+|++
T Consensus 244 -~~--------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s 313 (435)
T 4e54_B 244 -WN--------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLT 313 (435)
T ss_dssp -CC--------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEE
T ss_pred -EE--------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEE
Confidence 11 123567899999999886 56678899999999999876543332 2399999999999999 89999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCC-----CCeEEEEEecCCCEEEEEeC------------CCcEEEEEcC-CCcc--
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSS-----KGNVMVCFSPDDHYLLGKGS------------GTSMFVQSLR-GDPF-- 671 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~-----~~~vsl~fSpdg~~Lasgs~------------Dg~I~VWDl~-g~~l-- 671 (721)
|+.||+|++||++++..........+ ...+...|+|++.++++++. ++.|++||.. |..+
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 99999999999998765332221111 12235678888877776642 3579999987 4332
Q ss_pred --cccccCeEEE-EECCCCCcccccccEEEEecC
Q 004969 672 --RDFNMSILAA-YTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 672 --~~~~~~V~~v-~fsP~~~~~~v~v~lLASgs~ 702 (721)
.+|...|.++ +|||++ .+||+|+.
T Consensus 394 l~~~~~~~v~s~~~fspdg-------~~lasg~d 420 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMG-------DTLASAMG 420 (435)
T ss_dssp ECCSSCCCCCCEEEECTTS-------SCEEEECS
T ss_pred EeCCCCCcEEEEEEECCCC-------CEEEEEcC
Confidence 2445567776 799999 88998864
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=9e-24 Score=223.18 Aligned_cols=219 Identities=18% Similarity=0.198 Sum_probs=179.9
Q ss_pred CeEEEEEeCCCCC-EEEEEECCCeEEEEEC-CCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNH-ENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl-~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+| ++. ++++|+.||.|++||+ .++.. ..+. + |...|.+++|+| ++.+++++.||.|++||+++
T Consensus 58 ~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~--~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 58 PLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALT--NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp CEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECB--SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHH
T ss_pred ceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-Eecc--ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccc
Confidence 599999999 899 9999999999999999 87765 4444 6 999999999994 89999999999999999986
Q ss_pred ---------CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcE-EEEEccccCCCeEEE
Q 004969 531 ---------MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRR-LQVFADMHKEHINVV 599 (721)
Q Consensus 531 ---------~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~-v~~l~~~h~~~V~sI 599 (721)
++. ...+.+...|.+++|++++ +++++.|+.|++||+++ +.. .......|...|.++
T Consensus 132 ~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i 199 (342)
T 1yfq_A 132 YGDGVIAVKNLN----------SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199 (342)
T ss_dssp HTTBCEEEEESC----------SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred cccccccccCCe----------eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence 332 1123356789999998766 99999999999999998 543 222222388999999
Q ss_pred EEcC-CCCcEEEEEECCCcEEEEECCCC------CceeEEEecCCCC---------eE-EEEEecCCCEEEEEeCCCcEE
Q 004969 600 KFSN-HSPSIFATSSFDQDVKLWDLRQK------PIQPCYTASSSKG---------NV-MVCFSPDDHYLLGKGSGTSMF 662 (721)
Q Consensus 600 ~fsP-dg~~lLaSgs~DgtIrIWDlrs~------~~~~~~~~~~~~~---------~v-sl~fSpdg~~Lasgs~Dg~I~ 662 (721)
+|+| ++ .++++|+.||.|++||++.. .. ...+..|.. .+ +++|+|++++|++++.||.|+
T Consensus 200 ~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 200 ALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EECCCCC-CEEEEEecCCcEEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 9999 88 79999999999999999876 33 344444432 55 899999999999999999999
Q ss_pred EEEcC-CCc---cccc-ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 663 VQSLR-GDP---FRDF-NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 663 VWDl~-g~~---l~~~-~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+||+. +.. +..| ...|.+++ |++ .+|++|+..
T Consensus 277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-------~~l~s~s~D 313 (342)
T 1yfq_A 277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSD-------NILCLATSD 313 (342)
T ss_dssp EEETTTTEEEEECCCCSSSEEEEEE--ECS-------SEEEEEEEC
T ss_pred EEcCccHhHhhhhhcccCCCceEec--CCC-------CeEEEEecC
Confidence 99998 332 4555 67888888 999 899999887
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=233.40 Aligned_cols=223 Identities=10% Similarity=0.117 Sum_probs=182.2
Q ss_pred CeEEEEEeCCCCCEE-EEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| ++++| ++|+.||.|+|||+. +++.+..+....|...|.+++|+ +++.+|++|+.||.|++|++.++
T Consensus 104 ~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTSC
T ss_pred ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCEEEEEeCCCcEEEEecCCc
Confidence 599999999 88885 899999999999999 88888888755678899999998 78899999999999999999876
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
...... ......|...|.+++|+|+ +..+++++.|+.|++||+++++.+..+..+|...|.+++|+ ++ .+
T Consensus 182 ~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~-~~ 254 (450)
T 2vdu_B 182 PEEKFT-----QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD-YL 254 (450)
T ss_dssp CCSSCC-----CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST-TE
T ss_pred cccccc-----ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC-CE
Confidence 542100 0012245678999999999 88999999999999999999998888554499999999999 87 89
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEec-----------------------CC-CCeEEEEEecCCCEEEEEe-CCCcEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTAS-----------------------SS-KGNVMVCFSPDDHYLLGKG-SGTSMFV 663 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-----------------------~~-~~~vsl~fSpdg~~Lasgs-~Dg~I~V 663 (721)
|++|+.|++|++||+++++........ .. .....++|+|+++++++++ .++.|++
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 999999999999999998765444321 11 2233899999999999998 8999999
Q ss_pred EEc--C-CC---c---ccccccCeEEEEECCCC
Q 004969 664 QSL--R-GD---P---FRDFNMSILAAYTRPSS 687 (721)
Q Consensus 664 WDl--~-g~---~---l~~~~~~V~~v~fsP~~ 687 (721)
|++ . +. . +.. ...+.+++|+|++
T Consensus 335 w~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 335 LEMSEKQKGDLALKQIITF-PYNVISLSAHNDE 366 (450)
T ss_dssp EEECSSSTTCEEEEEEEEC-SSCEEEEEEETTE
T ss_pred EEeccCCCCceeeccEecc-CCceEEEEecCCc
Confidence 999 3 21 1 222 3689999999954
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=1.2e-23 Score=249.53 Aligned_cols=219 Identities=14% Similarity=0.157 Sum_probs=189.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++++|++|+.||.|++||+.+++.+..+. +|.+.|++++|+ +++.+|++|+.||+|++||+.++...
T Consensus 57 ~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 57 PVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp CEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred cEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceE
Confidence 599999999 99999999999999999999999998887 899999999998 78899999999999999999875321
Q ss_pred ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC--CCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP--dg~~lLaS 611 (721)
. .....|...|.+++|+| ++..+++++.||.|++||+++++....+...+...+.+++|+| ++ .++++
T Consensus 133 ~--------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~ 203 (814)
T 3mkq_A 133 E--------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT 203 (814)
T ss_dssp E--------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEE
T ss_pred E--------EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEE
Confidence 1 12224567899999999 7789999999999999999998888888764668999999999 77 79999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPS 686 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~ 686 (721)
|+.||.|++||++++.. ...+.+|...+ +++|+|+|+++++++.||.|++||+.. .. +..+...+.+++|+|+
T Consensus 204 ~~~dg~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp ECTTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EeCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 99999999999998744 55666677766 899999999999999999999999983 33 3444678999999999
Q ss_pred CC
Q 004969 687 SK 688 (721)
Q Consensus 687 ~~ 688 (721)
+.
T Consensus 282 ~~ 283 (814)
T 3mkq_A 282 GR 283 (814)
T ss_dssp CG
T ss_pred CC
Confidence 84
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=6.5e-23 Score=227.43 Aligned_cols=216 Identities=15% Similarity=0.262 Sum_probs=179.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+.++.+++ +++++|+.||+|++||+.+++.+..+. +|.+.|++++|+ +++ .+++|+.||+|++||+++++.
T Consensus 125 ~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~-~~~-~l~s~s~dg~i~vwd~~~~~~-- 195 (464)
T 3v7d_B 125 ITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYA-HGG-ILVSGSTDRTVRVWDIKKGCC-- 195 (464)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-STT-EEEEEETTSCEEEEETTTTEE--
T ss_pred EEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEc-CCC-EEEEEeCCCCEEEEECCCCcE--
Confidence 56777755 799999999999999999999998887 899999999997 444 999999999999999988643
Q ss_pred cccccCcceeEe-ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCcE-----------------------EEEEc
Q 004969 536 RGMHYGAGTVTF-DEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRR-----------------------LQVFA 589 (721)
Q Consensus 536 ~~~~~~~~~~~~-~~~~~V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s~~~-----------------------v~~l~ 589 (721)
...+ .|...|.+++|++ ++..+++++.||.|++||++++.. +..+.
T Consensus 196 --------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 196 --------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp --------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred --------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 2223 3667899999984 668899999999999999997653 44555
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-
Q 004969 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR- 667 (721)
Q Consensus 590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~- 667 (721)
+ |...|.++ ++++ .++++|+.||.|++||+++++ .+..+.+|...+ +++|+|+++++++|+.||.|++||++
T Consensus 268 ~-~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 268 G-HMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp C-CSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred C-ccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 5 88888887 4566 799999999999999999874 466677777777 89999999999999999999999997
Q ss_pred CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 668 GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 668 g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.. +..|...|.++.|++ ..|++|+..
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~~---------~~l~s~s~d 371 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLSD---------KFLVSAAAD 371 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECS---------SEEEEEETT
T ss_pred CcEEEEEeCCCCcEEEEEEcC---------CEEEEEeCC
Confidence 433 456678899999974 567777765
No 92
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=1.3e-23 Score=219.61 Aligned_cols=209 Identities=12% Similarity=0.149 Sum_probs=170.7
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCC---------eEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCe
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENE---------NIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGS 522 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg---------~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGt 522 (721)
.|++++|+|. ++.+|++|+.||+|++||+.++ +.+..+. +|...|.+++|+ ++ +.++++++.||.
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN--DSKGSLYSVKFA-PAHLGLKLACLGNDGI 135 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC--CCSSCEEEEEEC-CGGGCSEEEEEETTCE
T ss_pred cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec--ccCCceeEEEEc-CCCCCcEEEEecCCCc
Confidence 5999999995 4899999999999999999877 4455665 889999999998 55 889999999999
Q ss_pred EEEEEcCCCCCccccccc----CcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCcE--EEEEccccC
Q 004969 523 LKLYDIRHMPPSIRGMHY----GAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSGRR--LQVFADMHK 593 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~----~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~ 593 (721)
|++||+++++........ ........+...+.+++|+|+ +..+++++.|+.+.+|+...++. +..+.+ |.
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~ 214 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HK 214 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CC
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CC
Confidence 999999887652111100 000111135567999999997 89999999999998888887765 566665 99
Q ss_pred CCeEEEEEcCCCC---cEEEEEECCCcEEEEECCCCC-------------------------------------------
Q 004969 594 EHINVVKFSNHSP---SIFATSSFDQDVKLWDLRQKP------------------------------------------- 627 (721)
Q Consensus 594 ~~V~sI~fsPdg~---~lLaSgs~DgtIrIWDlrs~~------------------------------------------- 627 (721)
..|++++|+|+++ .++++|+.||.|++||++++.
T Consensus 215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (351)
T 3f3f_A 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL 294 (351)
T ss_dssp SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence 9999999999974 699999999999999998742
Q ss_pred -ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 628 -IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 628 -~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
...+..+.+|...+ +++|+|++++|++|+.||.|++|++.
T Consensus 295 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 13455667777777 89999999999999999999999998
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.8e-24 Score=236.57 Aligned_cols=229 Identities=17% Similarity=0.205 Sum_probs=180.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC---CCeEEEEee--------cCC--CCCCeEEEEEee-CCCCEEEEEeCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE---NENIVSYIP--------SFG--AMNSVLGLCWLK-KYPSKLIAGSDN 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~---tg~~i~~l~--------~~~--H~~~V~sl~fsp-~d~~~LaSgs~D 520 (721)
.|++++|+| ++.++++|+.||+|++||+. +++...... ... +...+.++.+.. +++.++++|+.|
T Consensus 113 ~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 113 TVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 699999999 99999999999999999994 555444332 112 566777777431 567899999999
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN 597 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~ 597 (721)
|+|++||+++++. ...+. |...|++++|+|++..+++++.||.|++||+++++.+..+...|...|.
T Consensus 192 ~~i~iwd~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 192 SRVIIFDIRTLER----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp SEEEEEETTTCCE----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred CeEEEEeCCCCee----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 9999999988654 22222 5678999999999999999999999999999999999988633888999
Q ss_pred EEEEcC----CCCcEEEEEECCCcEEEEECCCCCceeEEEec----------------------C--CCCeE-EEEEecC
Q 004969 598 VVKFSN----HSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS----------------------S--SKGNV-MVCFSPD 648 (721)
Q Consensus 598 sI~fsP----dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~----------------------~--~~~~v-sl~fSpd 648 (721)
+++|+| ++ .++++|+.||+|++||++++++...+... + |...+ +++|+ +
T Consensus 262 ~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 262 HVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp EEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred EEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 997765 45 69999999999999999987654333311 1 33334 78999 7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCc----ccc-------------------------------------cccCeEEEEECCC-
Q 004969 649 DHYLLGKGSGTSMFVQSLRGDP----FRD-------------------------------------FNMSILAAYTRPS- 686 (721)
Q Consensus 649 g~~Lasgs~Dg~I~VWDl~g~~----l~~-------------------------------------~~~~V~~v~fsP~- 686 (721)
+++|++|+.|+.|++||+.... +.. |...|.+++|+|+
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 8999999999999999987321 222 6678899999888
Q ss_pred -CCcccccccEEEEecCC
Q 004969 687 -SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 -~~~~~v~v~lLASgs~~ 703 (721)
+ .+|++|+..
T Consensus 420 ~~-------~~l~s~~~d 430 (437)
T 3gre_A 420 ET-------PLLVACDNS 430 (437)
T ss_dssp SS-------EEEEEEETT
T ss_pred Cc-------eEEEEEcCC
Confidence 5 899999876
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=4.4e-24 Score=226.65 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=160.1
Q ss_pred CeEEEEEeC-CCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHP-SISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP-~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~ 530 (721)
.|++++|+| .++++|++|+.||+|++||+.++. ....+. +|...|.+++|+|.. +.+|++|+.||+|++||+..
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 599999986 248999999999999999999874 444444 899999999999542 78999999999999999987
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecC-----------------CCEEEEEeCCCcEEEEECCCC---cEEEEEcc
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-----------------DELFLASGYSKNIALYDINSG---RRLQVFAD 590 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-----------------~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~ 590 (721)
+..... . .....|...|.+++|+|+ +..+++++.|++|++||++.+ +.+..+.+
T Consensus 137 ~~~~~~-~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 137 EGQWEV-K-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp SSCEEE-C-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred CCCcce-e-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 532100 0 001124456788899886 368899999999999999865 45667776
Q ss_pred ccCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969 591 MHKEHINVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW 664 (721)
|...|.+++|+|++ ..+|++|+.|++|++||+++... .....+..|...+ +++|+|+|++|++++.|+.|++|
T Consensus 211 -h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 -HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp -CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred -CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999999985 36899999999999999986211 0111223445555 99999999999999999999999
Q ss_pred EcC
Q 004969 665 SLR 667 (721)
Q Consensus 665 Dl~ 667 (721)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 976
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.8e-23 Score=226.12 Aligned_cols=220 Identities=16% Similarity=0.231 Sum_probs=181.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.+++|++ ..+++++.||.|++||+.+++....+.. .|...|++++|+ +++.+|++|+.||.|++||+.+++..
T Consensus 95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 95 YLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWS-HDGSFLSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEEC-CCCCEEEEECCCCeEEEEECcCCeEE
Confidence 467788887 4578888999999999999998887764 488999999998 68999999999999999999886531
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. ....|...|.+++| ++..+++++.||.|++||++ .+..+..+.+ |...|.+++|+|++ .++++|+
T Consensus 170 -~--------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~ 236 (401)
T 4aez_A 170 -R--------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDG-LQLASGG 236 (401)
T ss_dssp -E--------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTS-SEEEEEE
T ss_pred -E--------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCC-CEEEEEe
Confidence 1 11245678999999 46799999999999999999 5667777876 99999999999998 8999999
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEe--CCCcEEEEEcC-CCcccc--cccCeEEEEECCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKG--SGTSMFVQSLR-GDPFRD--FNMSILAAYTRPS 686 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs--~Dg~I~VWDl~-g~~l~~--~~~~V~~v~fsP~ 686 (721)
.||.|++||++++.. ...+..|...+ +++|+|++. ++++|+ .|+.|++||++ +..+.. +...+.++.|+|+
T Consensus 237 ~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~ 314 (401)
T 4aez_A 237 NDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH 314 (401)
T ss_dssp TTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred CCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC
Confidence 999999999998744 55666777777 999999775 555554 69999999997 444333 3568999999999
Q ss_pred CCcccccccEEEEec
Q 004969 687 SKSEIVKVNLLASTD 701 (721)
Q Consensus 687 ~~~~~v~v~lLASgs 701 (721)
+ ..+++++
T Consensus 315 ~-------~~l~~~~ 322 (401)
T 4aez_A 315 S-------KEIMSTH 322 (401)
T ss_dssp S-------SEEEEEE
T ss_pred C-------CeEEEEe
Confidence 9 7777754
No 96
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=2e-24 Score=236.69 Aligned_cols=225 Identities=13% Similarity=0.090 Sum_probs=165.1
Q ss_pred eCCCCCEEEEEECCCeEEEEECCCCeEEEEe---ecCCCCCCeEEEEEee-------CCCCEEEEEeCCCeEEEEEcCCC
Q 004969 462 HPSISCLMVFGTLDGEIVVVNHENENIVSYI---PSFGAMNSVLGLCWLK-------KYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 462 sP~dg~~LasGs~DG~I~IWdl~tg~~i~~l---~~~~H~~~V~sl~fsp-------~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|.++.++++|+.|++|+|||..++...... ...+|.+.|++|+|+| .++++|+|||.|++|+|||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3337789999999999999999988764422 2358999999999986 26789999999999999999875
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc---------------------
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--------------------- 589 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~--------------------- 589 (721)
.+ ....+.|..+|.+++|+|++. .+++++.|++|++||+++++......
T Consensus 177 ~~---------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 177 GP---------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EE---------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred ce---------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 43 233556778899999999885 68888899999999999876543221
Q ss_pred ---cccCCCeEEEEEc-CCCCcEEEEEECCCcEEEEECCCCCceeEEE-----------------ecCCCCeEEEEEec-
Q 004969 590 ---DMHKEHINVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----------------ASSSKGNVMVCFSP- 647 (721)
Q Consensus 590 ---~~h~~~V~sI~fs-Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~-----------------~~~~~~~vsl~fSp- 647 (721)
.+|...+.++.|. |++ ..+++++.|+++++||++.++...... ...+...+...|+|
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 1377788899987 677 899999999999999998764321110 11111112234544
Q ss_pred -CCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 648 -DDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 648 -dg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++.++++|+.||.|++||+. +.. ...|..+|.+++|||++ .+||+++..
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-------~~LA~as~~ 380 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-------SHLAIATEG 380 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-------SEEEEEESS
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence 44567788899999999987 333 34567799999999999 999999865
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=8.8e-23 Score=212.94 Aligned_cols=201 Identities=12% Similarity=0.165 Sum_probs=163.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---------------------------------------C
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---------------------------------------F 495 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---------------------------------------~ 495 (721)
.|++++|+| +++++++|+.||+|++||+++++.+..+.. .
T Consensus 69 ~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 69 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred eEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 599999999 999999999999999999998887665542 1
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE---EEeCCC
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL---ASGYSK 572 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll---s~g~Dg 572 (721)
+|...+..+.|. +++.++++++.||+|++||+.+++..... ......+...|.++.+++.+..++ +++.++
T Consensus 148 ~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 148 GHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVP-----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCC-----SEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred CccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccc-----eeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 566777788886 67889999999999999999876542111 122334556789999998876554 334589
Q ss_pred cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC
Q 004969 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS--SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD 649 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg--s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg 649 (721)
+|++||.+......... +...+..+.|+|++ ..++++ +.|+.|++||+++++. +..+.+|.+.+ +++|+|+|
T Consensus 222 ~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVD--AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp EEEEEETTTCCEEEEEE--CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTS
T ss_pred EEEEEeccccccccccc--ceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCC
Confidence 99999999988877766 78889999999999 455544 3799999999999854 66778888888 89999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004969 650 HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~ 667 (721)
++|++|+.||+|+|||+.
T Consensus 297 ~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCF 314 (318)
T ss_dssp SCEEEEETTTEEEEECCS
T ss_pred CEEEEEecCCeEEEEECC
Confidence 999999999999999986
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=5e-23 Score=234.91 Aligned_cols=229 Identities=16% Similarity=0.161 Sum_probs=189.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCC-eEEEEEeeC--CCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNS-VLGLCWLKK--YPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~-V~sl~fsp~--d~~~LaSgs~DGtVrIWD 527 (721)
.|.+++|+| +++++++|+ ++.|+|||+.++ +....+. +|... |++++|+ + ++++|++|+.||+|++||
T Consensus 20 ~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~s-p~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 20 FTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFS-PIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEEC-SSTTCCEEEEEETTSEEEEEE
T ss_pred ceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEe--cCCCceEEEEEEC-cCCCCCEEEEecCCCEEEEEe
Confidence 589999999 999999998 889999999988 7888877 89999 9999998 6 899999999999999999
Q ss_pred cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969 528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs 602 (721)
+.++... .... ......+ .+..+|.+++|+|++..+++++.+ +.|++|| +++.+..+.+ |...|.+++|+
T Consensus 95 ~~~~~~~-~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~ 169 (615)
T 1pgu_A 95 WTFDKES-NSVE-VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLK 169 (615)
T ss_dssp EEEEGGG-TEEE-EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEEC
T ss_pred CCCCccc-cccc-ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEEC
Confidence 9754100 0000 0111122 356789999999999999999987 6888888 6778888886 99999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCC---eE-EEEEecC-CCEEEEEeCCCcEEEEEcC-CCc---c-c
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG---NV-MVCFSPD-DHYLLGKGSGTSMFVQSLR-GDP---F-R 672 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~---~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~-g~~---l-~ 672 (721)
|+++.++++++.|+.|++||+++++ ....+.+|.. .+ +++|+|+ +++|++++.||.|++||++ +.. + .
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence 9995589999999999999998874 3556677776 56 9999999 9999999999999999987 333 3 3
Q ss_pred ---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 673 ---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 673 ---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.|...|.++.|+ ++ ..|++++..
T Consensus 248 ~~~~~~~~v~~~~~~-~~-------~~l~~~~~d 273 (615)
T 1pgu_A 248 DQEPVQGGIFALSWL-DS-------QKFATVGAD 273 (615)
T ss_dssp TTBCCCSCEEEEEES-SS-------SEEEEEETT
T ss_pred cccccCCceEEEEEc-CC-------CEEEEEcCC
Confidence 667799999999 88 888888865
No 99
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-23 Score=225.03 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=161.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC---------CCeEEEEeecCCCCCCeEEEEEeeC--CCCEEEEEeCCCeE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE---------NENIVSYIPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSL 523 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~---------tg~~i~~l~~~~H~~~V~sl~fsp~--d~~~LaSgs~DGtV 523 (721)
.|.++.|+| + +++|+.||+|++|+.. +++.+..+.. +|.+.|.+++|+ + +++++++|+.||+|
T Consensus 78 ~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i 151 (343)
T 3lrv_A 78 NPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV-DSANEIIYMYGH-NEVNTEYFIWADNRGTI 151 (343)
T ss_dssp CCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC-CCSSCEEEEECC-C---CCEEEEEETTCCE
T ss_pred CceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec-CCCCCEEEEEcC-CCCCCCEEEEEeCCCcE
Confidence 366778888 3 9999999999999765 5554555443 677899999998 6 78999999999999
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-EEEccccCCCeEEEEEc
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-QVFADMHKEHINVVKFS 602 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v-~~l~~~h~~~V~sI~fs 602 (721)
++||+++++.. . .....+...|.+++|+|++..+++|+.||.|++||+++++.+ ..+...|...|++++|+
T Consensus 152 ~~wd~~~~~~~-~-------~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 152 GFQSYEDDSQY-I-------VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp EEEESSSSCEE-E-------EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred EEEECCCCcEE-E-------EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 99999986541 1 011123456899999999999999999999999999999887 77775599999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEE-EecCCCCe---EEEEEecCCCEEEEEeC-CCcEEEEEcCCCc--ccccc
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCY-TASSSKGN---VMVCFSPDDHYLLGKGS-GTSMFVQSLRGDP--FRDFN 675 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-~~~~~~~~---vsl~fSpdg~~Lasgs~-Dg~I~VWDl~g~~--l~~~~ 675 (721)
|++ .++++++ |++|++||+++.+..... .+..+... .+++|+|+|++|++++. |+.+++|++.... ...
T Consensus 224 ~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-- 299 (343)
T 3lrv_A 224 DNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-- 299 (343)
T ss_dssp TTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--
T ss_pred CCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--
Confidence 999 7999999 559999999987543211 11112222 35999999999999998 9999999996321 111
Q ss_pred cCeEEEEECC
Q 004969 676 MSILAAYTRP 685 (721)
Q Consensus 676 ~~V~~v~fsP 685 (721)
.++..+.|+|
T Consensus 300 ~~~~~~~~~~ 309 (343)
T 3lrv_A 300 DEESALCLQS 309 (343)
T ss_dssp EEEEECCC--
T ss_pred cCceeEecCc
Confidence 4556677777
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=5.1e-23 Score=227.88 Aligned_cols=204 Identities=18% Similarity=0.293 Sum_probs=168.9
Q ss_pred CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeE-------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENI-------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~-------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
.|++++|+| ++. +|++|+.||.|++|++.++.. ...+. +|...|.+++|+|.++.+|++++.||.|++|
T Consensus 183 ~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 183 EGYGLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp CCCCEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CeEEEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 588999999 555 999999999999999987322 23333 8899999999996688999999999999999
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
|++++... ........|...|++++|+|++. .+++++.||.|++||+++ +.++..+.. |...|.+++|+|+
T Consensus 260 d~~~~~~~------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 260 DTRNNNTS------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPH 332 (430)
T ss_dssp ETTCSCSS------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSS
T ss_pred ECCCCCCC------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCC
Confidence 99986310 00111224667899999999887 577888999999999998 567888886 9999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCC------------ceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKP------------IQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~------------~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g 668 (721)
+..++++++.|+.|++||++... ...++...+|...+ .++|+|++. ++++++.||.|++|++..
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 97789999999999999998722 24466677777766 899999999 899999999999999974
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.3e-23 Score=228.08 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=178.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecC------------------------------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSF------------------------------------ 495 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~------------------------------------ 495 (721)
.+.+++|+| +|++++++ .++.|++||+.+|+ .+..+...
T Consensus 6 p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 6 PLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999 88866665 57899999999998 55555421
Q ss_pred ----------------CCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcC--CCCCcccccccCcceeEeccCCCeEEE
Q 004969 496 ----------------GAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIR--HMPPSIRGMHYGAGTVTFDEFDQLTSV 556 (721)
Q Consensus 496 ----------------~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~--~~~~~~~~~~~~~~~~~~~~~~~V~sv 556 (721)
+|.+.|++++|+ +++.+| ++|+.||+|++||+. ++... .. .....+...|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~------~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVL-KL------RKRFCFSKRPNAI 155 (450)
T ss_dssp ----------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCE-EE------EEEEECSSCEEEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCcee-ee------eecccCCCCceEE
Confidence 344479999998 677875 899999999999998 54431 11 1112455779999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEE----EEccccCCCeEEEEEcCC---CCcEEEEEECCCcEEEEECCCCCce
Q 004969 557 HVNSMDELFLASGYSKNIALYDINSGRRLQ----VFADMHKEHINVVKFSNH---SPSIFATSSFDQDVKLWDLRQKPIQ 629 (721)
Q Consensus 557 ~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~----~l~~~h~~~V~sI~fsPd---g~~lLaSgs~DgtIrIWDlrs~~~~ 629 (721)
+|+|++..+++++.||.|++||+.+++... .+.+ |...|.+++|+|+ + .++++|+.|++|++||++++...
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee
Confidence 999999999999999999999999876543 5565 9999999999999 7 89999999999999999987653
Q ss_pred eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----------------------------ccCeE
Q 004969 630 PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----------------------------NMSIL 679 (721)
Q Consensus 630 ~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----------------------------~~~V~ 679 (721)
..+ ..+|...+ +++|+ ++++|++++.|+.|++||++ ++.+..+ ...|.
T Consensus 234 ~~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 222 45676666 89999 99999999999999999997 3322211 24688
Q ss_pred EEEECCCCCcccccccEEEEec
Q 004969 680 AAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 680 ~v~fsP~~~~~~v~v~lLASgs 701 (721)
.++|+|++ ..|++++
T Consensus 312 ~i~~~~~~-------~~l~~~~ 326 (450)
T 2vdu_B 312 KIIKSKNL-------PFVAFFV 326 (450)
T ss_dssp EEEECSSS-------SEEEEEE
T ss_pred EEEEeCCC-------CEEEEEE
Confidence 99999999 7777776
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=2.2e-22 Score=216.82 Aligned_cols=202 Identities=11% Similarity=0.152 Sum_probs=167.5
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC--CCCEEEEEeCCCeEEEEEcCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~--d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
..|++++|+|.++.++++|+.||.|++||+.+++....+. +...+.++.|+|. ++.++++++.||.|++||+.++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 3699999999778899999999999999999999888775 5678999999853 3449999999999999999886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc-EEEEEc--------------cccCCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR-RLQVFA--------------DMHKEH 595 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~-~v~~l~--------------~~h~~~ 595 (721)
... .....|...|.+++|+|++.. +++++.||.|++||++++. .+..+. ..|...
T Consensus 177 ~~~---------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 177 SCS---------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp CCC---------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred cee---------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 542 111235678999999999984 8889999999999999765 444441 238899
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc---------------------------------------------ee
Q 004969 596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI---------------------------------------------QP 630 (721)
Q Consensus 596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~---------------------------------------------~~ 630 (721)
|.+++|+|++ .++++++.||.|++||+++++. ..
T Consensus 248 v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 248 VNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred eeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999998 7999999999999999987532 22
Q ss_pred EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 631 CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 631 ~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+..+.+|...+ +++|+|++++|++|+.||.|++||++.
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 34456677777 899999999999999999999999983
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=1.8e-22 Score=212.63 Aligned_cols=205 Identities=17% Similarity=0.234 Sum_probs=164.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|+| ++.++++|+.||.|++|+...+....... .+...+..+.++ +.+..+++|+.||.+++||+......
T Consensus 88 ~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 88 FVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred CEEEEEECC-CCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceE
Confidence 599999999 99999999999999999999888877766 667788888887 78889999999999999998753221
Q ss_pred cccccc-----------------------------------CcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 535 IRGMHY-----------------------------------GAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 535 ~~~~~~-----------------------------------~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
.....+ ...... ..|..+|++++|+|++..+++++.||.|++||
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 100000 000111 12567899999999999999999999999999
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-------EecCCCCeE-EEEEecCCC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-------TASSSKGNV-MVCFSPDDH 650 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-------~~~~~~~~v-sl~fSpdg~ 650 (721)
+++++.+..+. +...|.++.|+|++ .+++++.|+.|++||++++...... ...+|...+ +++|+|+|+
T Consensus 244 ~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 244 LNEGKHLYTLD--GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp TTTTEEEEEEE--CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred eccCceeeeec--CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 99999999887 56789999999987 4566778999999999986432221 223455666 899999999
Q ss_pred EEEEEeCCCcEEEEEcC
Q 004969 651 YLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~ 667 (721)
+|++|+.||.|+|||++
T Consensus 320 ~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCEEEEEeCC
Confidence 99999999999999987
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.1e-22 Score=219.93 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=162.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| +++++++|+.+| ++||++.+++....... ..+..++|. ++++.+ ++++.|++|++||+.+++.
T Consensus 21 ~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 21 PVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM----RHLSKVRML-HRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp CCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC----SCCCEEEEC-TTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec----CCeEEEEEc-CCCCEEEEEECCccEEEEEECCCCcE
Confidence 589999999 999999998776 78999998776655432 247778887 455555 6788899999999988654
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCC-----------------------------------CEEEEE--eCCCcEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMD-----------------------------------ELFLAS--GYSKNIAL 576 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-----------------------------------~~lls~--g~Dg~Irl 576 (721)
.. .+.+...|.+++++++. ..++++ +.||.|++
T Consensus 94 ~~----------~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 94 VS----------RIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EE----------EEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred EE----------EEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence 21 12222333333333211 345553 56899999
Q ss_pred EECCCCc---------------E-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeEEEec-C-C
Q 004969 577 YDINSGR---------------R-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPCYTAS-S-S 637 (721)
Q Consensus 577 WDl~s~~---------------~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~~~~~-~-~ 637 (721)
||+++++ + +..+.+ |...|++++|+|+| .++++|+.|++ |++||+++++.. ..+. + |
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~--~~~~~g~h 239 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLV--REFRRGLD 239 (355)
T ss_dssp EECCC------------------CCEEECC-CSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEE--EEEECTTC
T ss_pred EECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE--EEEEcCCC
Confidence 9999865 2 677776 99999999999999 89999999998 999999998654 4444 3 6
Q ss_pred CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc------ccc---------------------cccCeEEEEECCCCCc
Q 004969 638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP------FRD---------------------FNMSILAAYTRPSSKS 689 (721)
Q Consensus 638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~------l~~---------------------~~~~V~~v~fsP~~~~ 689 (721)
...+ +++|+|+|++|++++.|+.|++||++... +.. .......++|+|++
T Consensus 240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-- 317 (355)
T 3vu4_A 240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-- 317 (355)
T ss_dssp CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--
T ss_pred CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--
Confidence 6666 99999999999999999999999997321 111 01122568999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
..|++++..
T Consensus 318 -----~~l~~~~~d 326 (355)
T 3vu4_A 318 -----SLVVVWPHT 326 (355)
T ss_dssp -----EEEEEETTT
T ss_pred -----CEEEEEeCC
Confidence 788888765
No 105
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=9.4e-22 Score=224.35 Aligned_cols=228 Identities=11% Similarity=0.086 Sum_probs=180.1
Q ss_pred CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCC-CCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKY-PSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++++|+| ++. ++++|+.||.|++||+.+++.+..+. +|.. .|++++|+ ++ +++|++++.||.|++||+.
T Consensus 162 ~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 162 RINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp CEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT
T ss_pred cEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeec--ccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC
Confidence 599999999 665 89999999999999999999988887 7888 99999999 56 8999999999999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--------------------
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-------------------- 589 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-------------------- 589 (721)
+++........ ...|...|.+++|+ ++..+++++.|+.|++||+++++.+..+.
T Consensus 238 ~~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (615)
T 1pgu_A 238 SGEFLKYIEDD-----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311 (615)
T ss_dssp TCCEEEECCBT-----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred CCCEeEEeccc-----ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence 86542111000 00345567777777 67777777777777777766443221110
Q ss_pred --------------------------------------------------------------------------------
Q 004969 590 -------------------------------------------------------------------------------- 589 (721)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (721)
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004969 590 -------------------------------------------------------------------------------- 589 (721)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (721)
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 471 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEE
Confidence
Q ss_pred -------------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-CCCeE-EEEEec-------
Q 004969 590 -------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNV-MVCFSP------- 647 (721)
Q Consensus 590 -------------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~v-sl~fSp------- 647 (721)
..|...|.+++|+|++ .++++|+.||.|++||+.+++. +..+.+ |...+ +++|+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC-----
T ss_pred EECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccc
Confidence 1256678899999999 7999999999999999998744 555565 66666 999999
Q ss_pred ---CCCEEEEEeCCCcEEEEEcCC--Cc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 648 ---DDHYLLGKGSGTSMFVQSLRG--DP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 648 ---dg~~Lasgs~Dg~I~VWDl~g--~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++++|++++.||.|++||+.. .. +..|...|.+++|+|++ . |++++..
T Consensus 549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-------~-l~s~~~d 604 (615)
T 1pgu_A 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-------T-LVSSGAD 604 (615)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-------E-EEEEETT
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-------C-eEEecCC
Confidence 999999999999999999984 23 45677899999999999 8 8888876
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=2.6e-22 Score=221.93 Aligned_cols=216 Identities=13% Similarity=0.223 Sum_probs=180.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++| +++++++|+.||+|++||+.+++.+..+. +|...|.+++|+ ++.+++|+.||+|++||+.++...
T Consensus 175 ~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 175 SVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp CEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCC
T ss_pred cEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCc
Confidence 5889988 45899999999999999999999998887 889999999985 469999999999999999886542
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.. ......|...|.++++ ++..+++++.||.|++||+++++.+..+.+ |...|.+++|+ + .++++|+.
T Consensus 247 ~~------~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~-~~l~~g~~ 314 (435)
T 1p22_A 247 TL------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQYR--D-RLVVSGSS 314 (435)
T ss_dssp EE------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEE--T-TEEEEEET
T ss_pred ee------eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEeC--C-CEEEEEeC
Confidence 10 0122345677899998 788999999999999999999999999997 99999999995 4 68999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C------------cccccccCeEE
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D------------PFRDFNMSILA 680 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~------------~l~~~~~~V~~ 680 (721)
||+|++||+++++. +..+.+|...+ +++| ++.+|++|+.||.|++||++. . .+..|...|.+
T Consensus 315 dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 315 DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp TSCEEEEETTTCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred CCeEEEEECCCCCE--EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 99999999999854 56667787777 7777 799999999999999999852 1 24456778888
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++| ++ ..|++|+..
T Consensus 391 l~~--~~-------~~l~s~s~D 404 (435)
T 1p22_A 391 LQF--DE-------FQIVSSSHD 404 (435)
T ss_dssp EEE--CS-------SCEEECCSS
T ss_pred EEe--CC-------CEEEEEeCC
Confidence 888 45 567888765
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.9e-23 Score=233.69 Aligned_cols=222 Identities=14% Similarity=0.204 Sum_probs=173.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-----CeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-----~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|++++|+| +|.+||+++.||+|+|||.++ .+..+. |.. .|.+++|+ +++++|++|+.||+|++||+.
T Consensus 87 ~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 87 YPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC---CSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECC
T ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc---CCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECC
Confidence 699999999 999999999999999999654 555443 333 59999998 799999999999999999999
Q ss_pred CCCC------cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEE
Q 004969 530 HMPP------SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVK 600 (721)
Q Consensus 530 ~~~~------~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~ 600 (721)
++.. .+..+..+ .-.|...|.+++|+|++ +++++.|++|++||+.+++. .+++..+|...|.+++
T Consensus 160 ~~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp CCTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred CCccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 8642 01111100 01245689999999988 88999999999999998773 4567534889999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEE--ecCCCEEEEEeCCCcEEEEEcC----------
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF--SPDDHYLLGKGSGTSMFVQSLR---------- 667 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~f--Spdg~~Lasgs~Dg~I~VWDl~---------- 667 (721)
|+ | ..+|+++ +++|++||+.++... .... +|...+ .++| +|++..+++++.||. ++|...
T Consensus 234 Fs--g-~~LASa~-~~tIkLWd~~~~~~~-~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l 306 (588)
T 2j04_A 234 IV--D-YKVVLTC-PGYVHKIDLKNYSIS-SLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNII 306 (588)
T ss_dssp EE--T-TEEEEEC-SSEEEEEETTTTEEE-EEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSS
T ss_pred EE--C-CEEEEEe-CCeEEEEECCCCeEE-EEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceE
Confidence 99 5 6888887 699999999987432 3333 577766 8999 999999999999999 888862
Q ss_pred --------------CCccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 668 --------------GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 668 --------------g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.++..+ ...|.+++|+|+| .++|+++..
T Consensus 307 ~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG-------~~lA~~~~i 351 (588)
T 2j04_A 307 APYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDG-------YSIAIVYDM 351 (588)
T ss_dssp HHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTS-------SEEEEEEEE
T ss_pred EEEcCCEEEEEECCCCceeeeccceEEEEEEECCCC-------CEEEEEEec
Confidence 1111111 2358999999999 999999887
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.4e-23 Score=233.33 Aligned_cols=219 Identities=8% Similarity=0.021 Sum_probs=173.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-----------------------------EEeecCCCCCCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-----------------------------SYIPSFGAMNSVLGLC 505 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-----------------------------~~l~~~~H~~~V~sl~ 505 (721)
.|.+++|+| ||+++|+|+.|++|+ |...++.+ ..+. ..|...|.+++
T Consensus 17 ~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~-~~~~~~V~~va 92 (588)
T 2j04_A 17 WKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN-SQPVCYPRVCK 92 (588)
T ss_dssp SSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST-TSCSCCEEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEee-cCCCCcEEEEE
Confidence 378899999 999999999999996 54433311 1111 15578899999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969 506 WLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-----DQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (721)
Q Consensus 506 fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~-----~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~ 580 (721)
|+ +++..|++++.||+|++||..+ . ...+.|. ..|.+++|+|+|+.+++|+.||+|++||+.
T Consensus 93 wS-PdG~~LAs~s~dg~V~iwd~~~---~---------l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 93 PS-PIDDWMAVLSNNGNVSVFKDNK---M---------LTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EC-SSSSCEEEEETTSCEEEEETTE---E---------EEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EC-CCCCEEEEEeCCCcEEEEeCCc---e---------eeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 99 7999999999999999999544 1 1112222 248999999999999999999999999999
Q ss_pred CCc-------EEEEEc---cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce-eEEEe-cCCCCeE-EEEEec
Q 004969 581 SGR-------RLQVFA---DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTA-SSSKGNV-MVCFSP 647 (721)
Q Consensus 581 s~~-------~v~~l~---~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~-~~~~~~v-sl~fSp 647 (721)
++. .+.++. .+|..+|.+++|+|+| +++++.|++|++||+.++... ...++ .+|...+ +++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 885 356763 2388999999999987 888999999999999887643 22344 3565555 89999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcc---c-ccccCeEEEEE--CCCCCcccccccEEEEecCC
Q 004969 648 DDHYLLGKGSGTSMFVQSLRGDPF---R-DFNMSILAAYT--RPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 648 dg~~Lasgs~Dg~I~VWDl~g~~l---~-~~~~~V~~v~f--sP~~~~~~v~v~lLASgs~~ 703 (721)
|++|++++ ++.|++||+.+... . +|...+..++| +|++ ..|++++..
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-------~~La~a~ed 288 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-------TILLMSNKT 288 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-------EEEEECSSC
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-------CEEEEEcCC
Confidence 68999887 69999999986543 2 67789999999 9999 889998866
No 109
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=5.2e-22 Score=247.20 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=190.9
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
..|++++|+| +++++++|+.||+|+|||+.+++.+..+. +|...|.+++|+|. +..++++|+.||+|++||+.++.
T Consensus 658 ~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 658 DEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 3699999999 99999999999999999999999999888 89999999999853 45689999999999999998865
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE------------------------
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF------------------------ 588 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l------------------------ 588 (721)
.. .....|...|.+++|+|++..+++++.||.|++||+++++....+
T Consensus 735 ~~---------~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 735 CR---------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EE---------EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred hh---------heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 31 112246678999999999999999999999999999876544332
Q ss_pred ------------------------------ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC
Q 004969 589 ------------------------------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK 638 (721)
Q Consensus 589 ------------------------------~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~ 638 (721)
..+|...|.+++|+|++ .++++++.||.|++||+.++. ....+.+|.
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~h~ 882 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL--KVADCRGHL 882 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE--EEEEECCCS
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--eeeecCCCc
Confidence 21478889999999999 799999999999999999874 466677888
Q ss_pred CeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-----------------------------------------ccccccc
Q 004969 639 GNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-----------------------------------------PFRDFNM 676 (721)
Q Consensus 639 ~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-----------------------------------------~l~~~~~ 676 (721)
..+ +++|+|+|.++++++.||.|++|++... .......
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 877 8999999999999999999999996420 0011134
Q ss_pred CeEEEEECCCCCcccccccEEEEecCC
Q 004969 677 SILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 677 ~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.+.+++|+|++ ..+++|+..
T Consensus 963 ~i~~~~~sp~g-------~~l~~g~~~ 982 (1249)
T 3sfz_A 963 QVSCCCLSPHL-------EYVAFGDED 982 (1249)
T ss_dssp CEEEEEECTTS-------SEEEEEETT
T ss_pred cEEEEEEcCCC-------CEEEEEcCC
Confidence 68899999999 788888765
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.3e-22 Score=205.15 Aligned_cols=191 Identities=14% Similarity=0.196 Sum_probs=161.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|++ +++++|+.||.|++|| .+.....+. .|...|.+++|+|.+++.+++++.||.|++||.....
T Consensus 106 ~i~~~~~~~---~~l~~~~~d~~i~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 176 (313)
T 3odt_A 106 NVCSLSFQD---GVVISGSWDKTAKVWK--EGSLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI-- 176 (313)
T ss_dssp CEEEEEEET---TEEEEEETTSEEEEEE--TTEEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE--
T ss_pred CEEEEEecC---CEEEEEeCCCCEEEEc--CCcEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE--
Confidence 589999954 7999999999999999 677777776 7899999999997799999999999999999943311
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
......+...|.+++|+|++. +++++.||.|++||+++++.+..+.+ |...|.+++|+|++ .+++++.
T Consensus 177 --------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~l~~~~~ 244 (313)
T 3odt_A 177 --------KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG--DIVSCGE 244 (313)
T ss_dssp --------EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS--CEEEEET
T ss_pred --------EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC--CEEEEec
Confidence 111222567799999999887 99999999999999999999999987 99999999999998 4889999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
||.|++||+++++. ...+..+...+ +++|+|+++ +++++.||.|++||++..
T Consensus 245 dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 245 DRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred CCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999999999865 44445566555 899999999 556889999999999843
No 111
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=207.93 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=164.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~ 529 (721)
.|++++|+| +++++++|+.||.|++||+.+++.+..+. |...|.+++|+ +++.++++++.+ |.|++||+.
T Consensus 76 ~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 76 TIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEec
Confidence 599999999 99999999999999999999998887775 55677777776 566677777766 777777765
Q ss_pred CCCCc----------------------cccc-----------------------cc-CcceeEe-ccCCCeEEEEEecCC
Q 004969 530 HMPPS----------------------IRGM-----------------------HY-GAGTVTF-DEFDQLTSVHVNSMD 562 (721)
Q Consensus 530 ~~~~~----------------------~~~~-----------------------~~-~~~~~~~-~~~~~V~sv~~sp~~ 562 (721)
..... +... .. ......+ .+...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 44210 0000 00 0111122 255779999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--------------cEEEEECCCCCc
Q 004969 563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--------------DVKLWDLRQKPI 628 (721)
Q Consensus 563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--------------tIrIWDlrs~~~ 628 (721)
..+++++.|+.|++||+++++.+..+. +...+.+++|+|++ ..+++++.++ .+++||..+++.
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred CEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 999999999999999999999999987 78899999999999 7899998888 899999999854
Q ss_pred eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 629 QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 629 ~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
...+.+|...+ +++|+|+|++|++++.||.|++|+++.
T Consensus 308 --~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 308 --IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp --EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred --hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 55566777777 899999999999999999999999983
No 112
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=2.3e-21 Score=214.48 Aligned_cols=214 Identities=14% Similarity=0.245 Sum_probs=177.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++|++ +.+++|+.||+|++||+.+++.+..+. +|...|.+++| ++..+++|+.||.|++||+++++.
T Consensus 201 ~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~- 271 (445)
T 2ovr_B 201 TVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM--GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC- 271 (445)
T ss_dssp CEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE--CCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred cEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc--CCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-
Confidence 588888876 779999999999999999888888877 78889999987 567899999999999999887543
Q ss_pred ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
...+ .|...|.++++ ++..+++++.||.|++||+++++.+..+.+ |...+.++.++ + .++++|+
T Consensus 272 ---------~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~-~~l~~~~ 336 (445)
T 2ovr_B 272 ---------LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELK--D-NILVSGN 336 (445)
T ss_dssp ---------EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEE--T-TEEEEEE
T ss_pred ---------eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-CcccEEEEEEe--C-CEEEEEe
Confidence 1222 35567899998 789999999999999999999999999987 99999998885 4 5899999
Q ss_pred CCCcEEEEECCCCCceeEEEecC---CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcc--------cccccCeEE
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASS---SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF--------RDFNMSILA 680 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~---~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l--------~~~~~~V~~ 680 (721)
.||.|++||+++++. ...+.+ |...+ +++|+ ++++++|+.||.|++||++ +..+ ..+...|.+
T Consensus 337 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TTSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999998865 344443 55555 78885 6899999999999999998 4332 244668999
Q ss_pred EEECCCCCcccccccEEEEecCC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
++|+|++ .++|+|+..
T Consensus 413 ~~~s~~~-------~~la~~~~d 428 (445)
T 2ovr_B 413 IRASNTK-------LVCAVGSRN 428 (445)
T ss_dssp EEECSSE-------EEEEEECSS
T ss_pred EEecCCE-------EEEEEcccC
Confidence 9999999 999999876
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=9.7e-22 Score=216.53 Aligned_cols=225 Identities=13% Similarity=0.201 Sum_probs=180.3
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
+++..|+|++ + ++||+|. |++|+|||..+|+....+...+|...|++|+|+ +++++|++|+.||+|++||+.+++.
T Consensus 106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcE
Confidence 5788899998 4 5777776 999999999999999988877899999999998 7899999999999999999998654
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. .. ...|...+.++++ ++..+++++.|+.+++||.+.. ..+..+.+ |...+..+.|+|++ ..++++
T Consensus 182 ~-~~--------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 182 L-RN--------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp E-EE--------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTS-SEEEEE
T ss_pred E-EE--------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-cccceeeeeecCCC-Ceeeee
Confidence 1 11 1234566788877 5678999999999999999874 45566776 99999999999999 899999
Q ss_pred ECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecCCC-EEEEE--eCCCcEEEEEcCC-Ccccc--cccCeEEEEE
Q 004969 613 SFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPDDH-YLLGK--GSGTSMFVQSLRG-DPFRD--FNMSILAAYT 683 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpdg~-~Lasg--s~Dg~I~VWDl~g-~~l~~--~~~~V~~v~f 683 (721)
+.|+.|++||..++... .......+...+ +++|+|++. .++++ +.|+.|++||++. ..... ....+..+.|
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~ 328 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee
Confidence 99999999999876432 344556677777 899999664 55543 4799999999983 33222 2467899999
Q ss_pred CCCCCcccccccEEEEecC
Q 004969 684 RPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 684 sP~~~~~~v~v~lLASgs~ 702 (721)
+|++ ..++++++
T Consensus 329 ~~~~-------~~lv~~sg 340 (420)
T 4gga_A 329 SPHY-------KELISGHG 340 (420)
T ss_dssp ETTT-------TEEEEEEC
T ss_pred cCCC-------CeEEEEEe
Confidence 9998 66666654
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=1.3e-21 Score=216.27 Aligned_cols=213 Identities=16% Similarity=0.290 Sum_probs=176.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++| +++++++|+.||+|++||+.+++....+. +|.+.|++++| +++++++|+.||+|++||+.+++..
T Consensus 135 ~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 135 GVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred cEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 4777776 56999999999999999999999998887 89999999997 5789999999999999999986541
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
. ....|...|.+++|+ ++.+++++.||.|++||+++++.. ..+.+ |...|.+++| ++ ..+++
T Consensus 207 -~--------~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~--~~-~~l~s 271 (435)
T 1p22_A 207 -N--------TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DD-KYIVS 271 (435)
T ss_dssp -E--------EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEEEEEE--ET-TEEEE
T ss_pred -E--------EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC-CCCcEEEEEe--CC-CEEEE
Confidence 1 112355678999995 569999999999999999987755 55665 9999999999 45 69999
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPS 686 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~ 686 (721)
|+.||.|++||+++++. +..+.+|...+ ++.| ++.++++|+.||.|++||++ +.. +..|...|.+++| +
T Consensus 272 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp EETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred EeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 99999999999999854 55566777766 7777 57899999999999999998 433 4556778999988 4
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
+ ..|++|+..
T Consensus 346 ~-------~~l~sg~~d 355 (435)
T 1p22_A 346 N-------KRIVSGAYD 355 (435)
T ss_dssp S-------SEEEEEETT
T ss_pred C-------CEEEEEeCC
Confidence 5 678888765
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=3.3e-22 Score=214.47 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=144.6
Q ss_pred CeEEEEEeCCC----CCEEEEEEC--------------------CCeEEEEEC-CCCeEEEEeecCCCCCCeEEEEEee-
Q 004969 455 RPRQFEYHPSI----SCLMVFGTL--------------------DGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLK- 508 (721)
Q Consensus 455 ~V~~lafsP~d----g~~LasGs~--------------------DG~I~IWdl-~tg~~i~~l~~~~H~~~V~sl~fsp- 508 (721)
.|++++|+| + +..+++++. |++|++|++ ++|+.+..+. +|...+..++|++
T Consensus 113 ~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 113 EIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEV 189 (356)
T ss_dssp EEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEE
T ss_pred ceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec--cCCCceeeEEeecc
Confidence 467777777 6 666666553 889999998 5577777776 6666777777774
Q ss_pred -CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE------------EEEeCCCcEE
Q 004969 509 -KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF------------LASGYSKNIA 575 (721)
Q Consensus 509 -~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l------------ls~g~Dg~Ir 575 (721)
.++..|++|+.|++|+|||+.+++.. ..+.++.. +...+.+++|+|++..+ ++|+.|++|+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l-~tL~g~~~-----~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLL-KKMHIDDS-----YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEE-EEEECCC--------CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEE-EEEcCCCc-----ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 36789999999999999999997752 21211110 11357788899988776 4566799999
Q ss_pred EEECCCCcEEEEEc----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-E-EEEEecCC
Q 004969 576 LYDINSGRRLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-V-MVCFSPDD 649 (721)
Q Consensus 576 lWDl~s~~~v~~l~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-v-sl~fSpdg 649 (721)
+||..+++.+..+. .+|...+.+..++ + .++++|+.|++|+|||+.++++ +.++.+|... + +++|||||
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSS
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCC
Confidence 99999999887662 2376666555554 5 6899999999999999999965 5566666553 4 58999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004969 650 HYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~ 667 (721)
++|++|+.|++|+|||+.
T Consensus 339 ~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SEEEEECTTSCEEEEEEC
T ss_pred CEEEEEECCCcEEEecCC
Confidence 999999999999999963
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-22 Score=239.07 Aligned_cols=203 Identities=13% Similarity=0.166 Sum_probs=168.0
Q ss_pred CeEEEEEeCCC--CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.|++++|+| + ++++++|+.||+|++||+.+++........+|...|++++|+|.. +..+++|+.||+|++||+.++
T Consensus 55 ~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 55 PVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred ceEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 599999998 5 899999999999999999998743333334899999999999432 899999999999999999886
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCC----cEEEEEccccCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNS-------------MDELFLASGYSKNIALYDINSG----RRLQVFADMHKE 594 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-------------~~~~lls~g~Dg~IrlWDl~s~----~~v~~l~~~h~~ 594 (721)
... .......|...|.+++|+| ++..+++++.||.|++||++++ .....+.+ |..
T Consensus 134 ~~~-------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h~~ 205 (753)
T 3jro_A 134 GTT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSD 205 (753)
T ss_dssp SCC-------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSS
T ss_pred CCc-------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-CCC
Confidence 431 1122345667899999999 4889999999999999999987 45566776 999
Q ss_pred CeEEEEEcCC---CCcEEEEEECCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 595 HINVVKFSNH---SPSIFATSSFDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 595 ~V~sI~fsPd---g~~lLaSgs~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
.|.+++|+|+ + .++++|+.||+|++||++++... .......+...+ +++|+|+|+++++|+.||.|++|+++
T Consensus 206 ~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 206 WVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred cEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 9999999999 6 89999999999999999986321 122333455555 89999999999999999999999987
No 117
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.2e-22 Score=241.72 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=114.4
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE----EEE--c----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRL----QVF--A----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v----~~l--~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD 622 (721)
+.+++|+|+++.+++++.|++|++||+.++... ... . .+|...|.+++|+|++ .+||+|+.||+|+|||
T Consensus 438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFK 516 (902)
T ss_dssp CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEE
Confidence 334455678889999999999999999887421 111 1 1388999999999999 8999999999999999
Q ss_pred CCCCCc-------------------------------------------eeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969 623 LRQKPI-------------------------------------------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 623 lrs~~~-------------------------------------------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D 658 (721)
+.+++. .++..+.+|.+.+ +++||||| +||+|+.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence 976521 2355677788777 89999999 99999999
Q ss_pred CcEEEEEcCCCcc---------c-ccccCeEEEEEC-----CCCCcccccccEEEEecCC
Q 004969 659 TSMFVQSLRGDPF---------R-DFNMSILAAYTR-----PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 659 g~I~VWDl~g~~l---------~-~~~~~V~~v~fs-----P~~~~~~v~v~lLASgs~~ 703 (721)
++|++||+++..+ . +|...|.+++|+ |++. .-..|++|+..
T Consensus 596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~----~~~~l~sgs~D 651 (902)
T 2oaj_A 596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY----SSILMVCGTDM 651 (902)
T ss_dssp SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS----EEEEEEEEETT
T ss_pred CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC----cceEEEEEecC
Confidence 9999999986432 1 566779999999 8741 01688888876
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=1.5e-22 Score=221.74 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=141.8
Q ss_pred CeEEEEEeC-------CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHP-------SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP-------~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
.|.+++|+| .++++||+|+.|++|+|||+.++..+..+. +|...|.+++|+|.++.+|++|+.||+|++||
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 699999997 367899999999999999998887776665 78899999999965667899999999999999
Q ss_pred cCCCCCccccccc----------------CcceeEeccCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969 528 IRHMPPSIRGMHY----------------GAGTVTFDEFDQLTSVHVN-SMDELFLASGYSKNIALYDINSGRRLQVFAD 590 (721)
Q Consensus 528 i~~~~~~~~~~~~----------------~~~~~~~~~~~~V~sv~~s-p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~ 590 (721)
+.+++........ ........+...+.++.|+ +++..+++++.|+++++||+.+++....+..
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~ 295 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD 295 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence 9987652211110 0001112355678899987 6788999999999999999998877666654
Q ss_pred ccCCCeEEEEEcC-------------------CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC
Q 004969 591 MHKEHINVVKFSN-------------------HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH 650 (721)
Q Consensus 591 ~h~~~V~sI~fsP-------------------dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~ 650 (721)
|...+..+.+.| .+..++++|+.||+|++||+.++.... ....+...+ +++|+|||+
T Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 296 -STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--IPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp ---------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--EEEECSSCEEEEEECTTSS
T ss_pred -ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--EecCCCCcEEEEEEcCCCC
Confidence 544444443333 232467788899999999999886543 333444555 999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 004969 651 YLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 651 ~Lasgs~Dg~I~VWDl~g 668 (721)
+||+++.+ .+.+|.+.|
T Consensus 373 ~LA~as~~-Gv~lvrL~g 389 (393)
T 4gq1_A 373 HLAIATEG-SVLLTRLMG 389 (393)
T ss_dssp EEEEEESS-EEEEEEEGG
T ss_pred EEEEEeCC-CeEEEEEeC
Confidence 99999854 576776653
No 119
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=1e-20 Score=209.34 Aligned_cols=213 Identities=13% Similarity=0.260 Sum_probs=178.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|++++|++ +++++|+.||+|++||+.+++.+..+. +|...|.+++|+ ++.+++|+.||+|++||+.+++..
T Consensus 161 ~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 161 GVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp CEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEE
T ss_pred CEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEE
Confidence 589999986 799999999999999999999998887 899999999985 578999999999999999986541
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.....|...|.++++ ++..+++++.||.|++||+++++.+..+.+ |...|.+++| ++ ..+++|+.
T Consensus 233 ---------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~-~~l~~~~~ 297 (445)
T 2ovr_B 233 ---------HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DG-IHVVSGSL 297 (445)
T ss_dssp ---------EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CS-SEEEEEET
T ss_pred ---------EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CC-CEEEEEeC
Confidence 112245677899998 788999999999999999999999999987 9999999999 55 78999999
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcc---cc---cccCeEEEEECCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF---RD---FNMSILAAYTRPS 686 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l---~~---~~~~V~~v~fsP~ 686 (721)
||.|++||+++++. +..+.+|...+ ++.+ ++.++++|+.||.|++||++ +..+ .. |...|.+++|++
T Consensus 298 d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~- 372 (445)
T 2ovr_B 298 DTSIRVWDVETGNC--IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 372 (445)
T ss_dssp TSCEEEEETTTCCE--EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-
T ss_pred CCeEEEEECCCCCE--EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-
Confidence 99999999999854 55666777666 4554 67899999999999999997 4332 22 566899999964
Q ss_pred CCcccccccEEEEecCC
Q 004969 687 SKSEIVKVNLLASTDHC 703 (721)
Q Consensus 687 ~~~~~v~v~lLASgs~~ 703 (721)
..|++|+..
T Consensus 373 --------~~l~s~~~d 381 (445)
T 2ovr_B 373 --------NFVITSSDD 381 (445)
T ss_dssp --------SEEEEEETT
T ss_pred --------CEEEEEeCC
Confidence 567777765
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=8.3e-22 Score=208.90 Aligned_cols=203 Identities=15% Similarity=0.168 Sum_probs=159.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|++++|+| ++++|++|+.||.|++||+.+++.+... +|...|++++|++ +++.+|++++.||.|++||+++++.
T Consensus 88 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 88 PVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred CEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeec---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 599999999 9999999999999999999999877643 6889999999931 6778899999999999999998764
Q ss_pred cccccccCccee---------------------------------EeccCCCeEEEEEecCCCE----EEEEeCCCcEEE
Q 004969 534 SIRGMHYGAGTV---------------------------------TFDEFDQLTSVHVNSMDEL----FLASGYSKNIAL 576 (721)
Q Consensus 534 ~~~~~~~~~~~~---------------------------------~~~~~~~V~sv~~sp~~~~----lls~g~Dg~Irl 576 (721)
... ...+.... .......+.++.+.+.... +++++.||.|++
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 164 MMV-LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp SEE-EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EEE-EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 211 11111000 0011233555665555544 999999999999
Q ss_pred EECCCC---cEEEEEccccCC------------CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE
Q 004969 577 YDINSG---RRLQVFADMHKE------------HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV 641 (721)
Q Consensus 577 WDl~s~---~~v~~l~~~h~~------------~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v 641 (721)
||++.. ..+..+.+ |.. .|.+++|+|++ .++++|+.||.|++||+++++ .+..+.+|...+
T Consensus 243 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 318 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART--KLKTSEQLDQPI 318 (368)
T ss_dssp EESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE--EEEECCCCSSCE
T ss_pred EecCCCCccccceeeee-eecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc--EEEEecCCCCCc
Confidence 999987 56677775 665 79999999999 799999999999999999874 466777777777
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 642 -MVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 642 -sl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
+++|+|+|++|++++.|+..+.|++
T Consensus 319 ~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 319 SACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred eEEEECCCCCeEEEEecccccccccc
Confidence 8999999999999999886555543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=2e-20 Score=202.08 Aligned_cols=214 Identities=7% Similarity=0.085 Sum_probs=169.7
Q ss_pred CeEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~ 532 (721)
.+.+++|+| +++++ ++++.|++|++||+.+++.+..+.. + ..+.+++|+ ++++++ ++++.|+.|++||+.+++
T Consensus 33 ~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~-~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 33 NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPA--G-SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--S-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEEC--C-CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCe
Confidence 388999999 77766 6777999999999999999888863 3 389999998 577766 555677999999999854
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
. ...+.+...+.+++|+|++..+ ++++.|+.|++||+.+++.+..+.. ...+.+++|+|++..++++
T Consensus 108 ~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 108 V----------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp E----------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEE
T ss_pred E----------EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEE
Confidence 3 2233445678999999999988 4566799999999999999988874 4567999999999545578
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe---CCCcEEEEEcCC-Cccccc--ccCeEEEEECC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG---SGTSMFVQSLRG-DPFRDF--NMSILAAYTRP 685 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs---~Dg~I~VWDl~g-~~l~~~--~~~V~~v~fsP 685 (721)
++.|+.|++||+++++.. ..+..+....+++|+|+|+++++++ .++.|++||++. +.+..+ ...+..++|+|
T Consensus 176 ~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 253 (391)
T 1l0q_A 176 NFDSMSISVIDTVTNSVI--DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP 253 (391)
T ss_dssp ETTTTEEEEEETTTTEEE--EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred eCCCCEEEEEECCCCeEE--EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEcc
Confidence 888999999999988543 3344444445899999999999888 689999999983 332222 34678899999
Q ss_pred CC
Q 004969 686 SS 687 (721)
Q Consensus 686 ~~ 687 (721)
++
T Consensus 254 dg 255 (391)
T 1l0q_A 254 DG 255 (391)
T ss_dssp TS
T ss_pred CC
Confidence 99
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.88 E-value=1.3e-20 Score=206.36 Aligned_cols=223 Identities=10% Similarity=0.076 Sum_probs=180.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~ 533 (721)
.|.+++|+| ++.++++++.||.|++||+.+++.+..+. .|...+.+++|+ +++..+ ++++.|+.|++||+.+++.
T Consensus 171 ~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 171 FVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE
Confidence 589999999 89999999999999999999999988887 778899999998 566666 5556899999999987543
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
...+.....+.+++|+|++..+++++ .|+.|++||+++++.+..+. |...+.+++|+|++
T Consensus 247 ----------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g 314 (433)
T 3bws_A 247 ----------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTE 314 (433)
T ss_dssp ----------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSST
T ss_pred ----------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCC
Confidence 22233345589999999999999988 48899999999998887775 67789999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---------------CCcEEEEEcCC-C
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---------------GTSMFVQSLRG-D 669 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---------------Dg~I~VWDl~g-~ 669 (721)
..++++++.|+.|++||+.+++.. ..+.....+.+++|+|+|+++++++. ||.|++||+.. .
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEKKVQ--KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CEEEEEecCCCEEEEEECCCCcEE--EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 667788899999999999987543 34444455569999999999998876 57999999973 3
Q ss_pred ccccc--ccCeEEEEECCCCCcccccccEEEEecC
Q 004969 670 PFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 670 ~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
....+ ...+..++|+|++ ..|++++.
T Consensus 393 ~~~~~~~~~~~~~~~~s~dg-------~~l~~~~~ 420 (433)
T 3bws_A 393 VKEFWEAGNQPTGLDVSPDN-------RYLVISDF 420 (433)
T ss_dssp EEEEEECSSSEEEEEECTTS-------CEEEEEET
T ss_pred EEEEecCCCCCceEEEcCCC-------CEEEEEEC
Confidence 32222 4578999999999 77776654
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=2.9e-20 Score=200.70 Aligned_cols=203 Identities=8% Similarity=0.084 Sum_probs=148.5
Q ss_pred eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---
Q 004969 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM--- 531 (721)
Q Consensus 456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~--- 531 (721)
+..+++.+ +++.+ ++|+.|++|++||..+++.+..+. |...|.+++|++ + .++++ .|+.|++||+.++
T Consensus 61 ~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 61 LSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp CCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCB
T ss_pred eEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCcee
Confidence 56678888 55555 678889999999999999988875 456899999863 2 22222 2445555555443
Q ss_pred -------------------------------------CCccccccc------Cc-ceeEeccCCCeEEEEEecCCCEEEE
Q 004969 532 -------------------------------------PPSIRGMHY------GA-GTVTFDEFDQLTSVHVNSMDELFLA 567 (721)
Q Consensus 532 -------------------------------------~~~~~~~~~------~~-~~~~~~~~~~V~sv~~sp~~~~lls 567 (721)
......... .. ......|...|.+++|+|++..+++
T Consensus 133 ~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 133 ITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp SSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 200000000 00 1122346678999999999999999
Q ss_pred EeCCCc-EEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe-----------
Q 004969 568 SGYSKN-IALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA----------- 634 (721)
Q Consensus 568 ~g~Dg~-IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~----------- 634 (721)
++.|++ |++||+++++.+..+.. .|...|.+++|+|++ .++++++.|++|++||++.........+
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQS 291 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeecccccc
Confidence 999998 99999999999999983 499999999999999 7999999999999999986532222111
Q ss_pred ---------cCC--CCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 635 ---------SSS--KGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 635 ---------~~~--~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
... .....++|+++|.++++++.||.+++|++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 292 EWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 111 111368999999999999999999999987
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.86 E-value=1.3e-19 Score=195.71 Aligned_cols=210 Identities=13% Similarity=0.137 Sum_probs=168.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
.++++++.||.|++||+.+++.+..+. .| ..+.+++|+ ++++++ ++++.|++|++||+.+++. ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~----------~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNV----------IA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEE----------EE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeE----------EE
Confidence 568899999999999999999988886 44 458999998 677765 7777999999999988543 23
Q ss_pred EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr 624 (721)
.+.+...+.+++|+|++..+++++ .++.|++||+.+++.+..+. +...+.+++|+|++..++++++.|+.|++||++
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 344455899999999999887766 57999999999999988887 456789999999994455788889999999999
Q ss_pred CCCceeEEEecCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEcCCCcc-c--ccccCeEEEEECCCCCcccccccEEEEe
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDDHYL-LGKGSGTSMFVQSLRGDPF-R--DFNMSILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~I~VWDl~g~~l-~--~~~~~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
+++. ...+..+.....++|+|+|+++ ++++.++.|++||++.... . .+...+..++|+|++ ..++++
T Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-------~~l~~~ 217 (391)
T 1l0q_A 147 TKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG-------TKAYVT 217 (391)
T ss_dssp TTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS-------SEEEEE
T ss_pred CCcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC-------CEEEEE
Confidence 8854 4445556666789999999988 5677889999999984332 1 234578899999999 555555
Q ss_pred c
Q 004969 701 D 701 (721)
Q Consensus 701 s 701 (721)
+
T Consensus 218 ~ 218 (391)
T 1l0q_A 218 N 218 (391)
T ss_dssp E
T ss_pred e
Confidence 4
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=1.3e-19 Score=198.52 Aligned_cols=224 Identities=8% Similarity=0.071 Sum_probs=177.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
+.+++|+| ++.++++++.++.|++||+.+++....... .+|...|.+++|+ +++.++++++.|+.|++||+++++
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCC
T ss_pred ceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCce
Confidence 66899999 889999999999999999999988875432 3788899999996 788999999999999999998754
Q ss_pred CcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.. ..+ .+...+.+++|+|++..+++++ .|+.|++||+++++.+..+. +...+.+++|+|++ ..++
T Consensus 203 ~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g-~~l~ 269 (433)
T 3bws_A 203 YK----------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDG-KELY 269 (433)
T ss_dssp EE----------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTS-SEEE
T ss_pred EE----------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCC-CEEE
Confidence 31 122 3456789999999999887666 68999999999999988887 44569999999999 6777
Q ss_pred EEE--------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEcCCCc-cc--ccccCe
Q 004969 611 TSS--------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL-LGKGSGTSMFVQSLRGDP-FR--DFNMSI 678 (721)
Q Consensus 611 Sgs--------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~I~VWDl~g~~-l~--~~~~~V 678 (721)
+++ .|+.|++||+++++..... ........++|+|+++++ ++++.++.|++||+.... .. .+...+
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 777 5889999999987543333 222244589999999865 556889999999998432 22 235678
Q ss_pred EEEEECCCCCcccccccEEEEecCC
Q 004969 679 LAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 679 ~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..++|+|++ ..+++++..
T Consensus 348 ~~~~~s~dg-------~~l~~~~~~ 365 (433)
T 3bws_A 348 NTIALSPDG-------KYLYVSCRG 365 (433)
T ss_dssp EEEEECTTS-------SEEEEEECC
T ss_pred CeEEEcCCC-------CEEEEEecC
Confidence 999999999 666666543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=1.1e-18 Score=187.13 Aligned_cols=233 Identities=9% Similarity=0.019 Sum_probs=149.9
Q ss_pred eEEEEEeCCCCC--EEEEEECCCeEEEEECCCC---eEEEEeecCCCCCC-------------------------eEEEE
Q 004969 456 PRQFEYHPSISC--LMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNS-------------------------VLGLC 505 (721)
Q Consensus 456 V~~lafsP~dg~--~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~-------------------------V~sl~ 505 (721)
+.++-|-..+.+ -+++++ ..+|++|+..++ +.++++. .|..+ |.+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWH--FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEE--CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEe--ccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 556666552221 455555 568999999988 6777766 45444 45555
Q ss_pred EeeCC----CCEEEEEeCCCeEEEEEcCCCCCcccccccCcc--------------eeEeccCCCeEEEEEec---CCCE
Q 004969 506 WLKKY----PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG--------------TVTFDEFDQLTSVHVNS---MDEL 564 (721)
Q Consensus 506 fsp~d----~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~--------------~~~~~~~~~V~sv~~sp---~~~~ 564 (721)
|+ ++ +.++++++. .+++|++.+++.......++.. .....|...+..++|++ ++..
T Consensus 119 ~s-pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 119 CS-SDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp C-------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred EC-CCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCce
Confidence 55 45 567777663 2444444332221111111111 11223455678888888 6789
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEcccc--CCCeEEEEEcCCCCcEE------------EEEECCCcEEEEECCCCCcee
Q 004969 565 FLASGYSKNIALYDINSGRRLQVFADMH--KEHINVVKFSNHSPSIF------------ATSSFDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 565 lls~g~Dg~IrlWDl~s~~~v~~l~~~h--~~~V~sI~fsPdg~~lL------------aSgs~DgtIrIWDlrs~~~~~ 630 (721)
+++++.|++|+|||+++|+.++++.+.| ...+.+++|+|+| .++ ++|+.|++|++||..+++...
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 9999999999999999999999998522 3467888999998 554 678899999999999986544
Q ss_pred EEEe---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeE-EEEECCCCCcccccccEEEEecC
Q 004969 631 CYTA---SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSIL-AAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 631 ~~~~---~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~-~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
+... .+|.... +..+.++.++++|+.|++|+|||+. |+. +.+|...+. .++|+|++ .+|+||+.
T Consensus 275 v~~~~~p~Gh~~~~-lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG-------~~LaSGS~ 346 (356)
T 2w18_A 275 VMLYCLPPGQAGRF-LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD-------SHLLAGQK 346 (356)
T ss_dssp EEEECCCTTCCCCE-EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS-------SEEEEECT
T ss_pred EEEeeccCCCccee-EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC-------CEEEEEEC
Confidence 4332 3444332 2333348899999999999999998 443 444555444 58999999 99999997
Q ss_pred C
Q 004969 703 C 703 (721)
Q Consensus 703 ~ 703 (721)
.
T Consensus 347 D 347 (356)
T 2w18_A 347 D 347 (356)
T ss_dssp T
T ss_pred C
Confidence 6
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=6e-18 Score=186.99 Aligned_cols=212 Identities=15% Similarity=0.076 Sum_probs=165.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCe--EEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDG---EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGS--LKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG---~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGt--VrIWDi 528 (721)
.|.+++|+| ++++|++++.++ .|++||+.+++... +. .|...+.+++|+ ++++.|+ +++.||. |.+||+
T Consensus 180 ~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~--~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 180 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-VA--SFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE-EE--CCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEET
T ss_pred cceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE-ee--cCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEEC
Confidence 589999999 999999999885 99999999988754 33 677889999999 6888777 6776655 999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.+++. . ....+...+.+++|+|++..+++++. ++ .|++||+.+++.. .+.. +...+.+++|+|+|
T Consensus 255 ~~~~~--~--------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG 322 (415)
T 2hqs_A 255 ASGQI--R--------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG 322 (415)
T ss_dssp TTCCE--E--------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTS
T ss_pred CCCCE--E--------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCC
Confidence 87543 1 11223456899999999999998886 44 6888899887743 3443 77789999999999
Q ss_pred CcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCc---cccccc
Q 004969 606 PSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDP---FRDFNM 676 (721)
Q Consensus 606 ~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~---l~~~~~ 676 (721)
.++++++.+ +.|++||+.+++.. .+..+....+++|+|+|++|++++.++ .|++||+.+.. +..+..
T Consensus 323 -~~l~~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~ 398 (415)
T 2hqs_A 323 -KFMVMVSSNGGQQHIAKQDLATGGVQ---VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 398 (415)
T ss_dssp -SEEEEEEECSSCEEEEEEETTTCCEE---ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS
T ss_pred -CEEEEEECcCCceEEEEEECCCCCEE---EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC
Confidence 677766654 58999999987642 334444455899999999999888777 79999998654 445567
Q ss_pred CeEEEEECCCC
Q 004969 677 SILAAYTRPSS 687 (721)
Q Consensus 677 ~V~~v~fsP~~ 687 (721)
.|..++|+|..
T Consensus 399 ~v~~~~~~~~~ 409 (415)
T 2hqs_A 399 QVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEECCCC
T ss_pred CCcCCcccccc
Confidence 89999999986
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=8.4e-18 Score=171.79 Aligned_cols=224 Identities=8% Similarity=0.014 Sum_probs=163.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEe--CCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs--~DGtVrIWDi~~ 530 (721)
.|.+++|+| +++++++++ ++.|++||+.+ ++...... +| ...+.+++|+ +++++|++++ .++.++||.+..
T Consensus 43 ~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 43 LFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp CCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEET
T ss_pred ceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEEC
Confidence 489999999 999999987 78999999998 77765554 33 4678899998 7889999988 445666666543
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDIN--SGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg~IrlWDl~--s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.... ...+.....+..++|+|++..++ +++.++.+++|++. +++ ...+.. +...+.+++|+|++ .
T Consensus 118 ~~~~---------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~s~dg-~ 185 (297)
T 2ojh_A 118 TGGT---------PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH-GEGRNDGPDYSPDG-R 185 (297)
T ss_dssp TCCC---------CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC-SSSCEEEEEECTTS-S
T ss_pred CCCc---------eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc-CCCccccceECCCC-C
Confidence 2111 11222333578899999999888 56678999999864 344 344544 78899999999999 5
Q ss_pred EEEEE-ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC-----------CcEEEEEcCCCcc---
Q 004969 608 IFATS-SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG-----------TSMFVQSLRGDPF--- 671 (721)
Q Consensus 608 lLaSg-s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D-----------g~I~VWDl~g~~l--- 671 (721)
.++.+ ..++.+++|++.... .....+..+...+ .++|+|+|++|++++.+ +.|++||+.+...
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 55554 469999999986321 1234455555555 79999999999988765 5699999985432
Q ss_pred c---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 672 R---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 672 ~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
. .+...+..+.|+|++ ..|++++..
T Consensus 265 ~~~~~~~~~~~~~~~spdg-------~~l~~~~~~ 292 (297)
T 2ojh_A 265 FDLFGGQGTMNSPNWSPDG-------DEFAYVRYF 292 (297)
T ss_dssp EEEEESTTTSCSCCBCTTS-------SEEEEEEEC
T ss_pred eccCCCCcccccceECCCC-------CEEEEEEec
Confidence 1 345578889999999 777777665
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=9.7e-17 Score=177.30 Aligned_cols=211 Identities=11% Similarity=0.040 Sum_probs=157.5
Q ss_pred CCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCCCccc
Q 004969 466 SCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRHMPPSIR 536 (721)
Q Consensus 466 g~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~~~~~~~ 536 (721)
+..++.++.+ ++|++||+..+ ....+. +|...|.+++|+ ++++.|++++.++ .|++||+.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~--~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~--- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAV--- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEE--EESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEe--CCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence 4566666554 79999999854 445555 678899999999 7899999999885 999999998653
Q ss_pred ccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
.....+...+.+++|+|++..++ +++.++ .|++||+.+++. ..+.. |...+.+++|+|+| +.+++++
T Consensus 216 -------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg-~~l~~~s 285 (415)
T 2hqs_A 216 -------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDS-QNLAFTS 285 (415)
T ss_dssp -------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTS-SEEEEEE
T ss_pred -------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCC-CEEEEEE
Confidence 11223445789999999999888 445554 499999998876 45554 88899999999999 6777666
Q ss_pred C-CC--cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc--ccCeEEEEEC
Q 004969 614 F-DQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF--NMSILAAYTR 684 (721)
Q Consensus 614 ~-Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~--~~~V~~v~fs 684 (721)
. ++ .|.+||+.+++.. .+..+...+ .++|+|+|++|++++.+ +.|++||+.+...... ...+..++|+
T Consensus 286 ~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s 362 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA 362 (415)
T ss_dssp CTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEE---EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence 5 45 6777899887532 233344455 89999999999988764 5899999985433222 2378999999
Q ss_pred CCCCcccccccEEEEecCC
Q 004969 685 PSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 685 P~~~~~~v~v~lLASgs~~ 703 (721)
|++ ..|++++..
T Consensus 363 pdg-------~~l~~~s~~ 374 (415)
T 2hqs_A 363 PNG-------TMVIYSSSQ 374 (415)
T ss_dssp TTS-------SEEEEEEEE
T ss_pred CCC-------CEEEEEEcC
Confidence 999 666666643
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=3.2e-16 Score=164.63 Aligned_cols=221 Identities=11% Similarity=0.157 Sum_probs=154.0
Q ss_pred CeEEEEEeCCCCCEEEEEECC-CeEEEEECC--CCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLD-GEIVVVNHE--NENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D-G~I~IWdl~--tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi 528 (721)
.|.+++|+| +++++++++.+ +.|.+|++. ++.. +..+. .+ ..+..++|+ ++++++++++ .++.|.+||+
T Consensus 39 ~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 39 QVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LP-GSLTHISTD-HQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CS-SCCSEEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cC-CCCcEEEEc-CCCCEEEEEecCCCeEEEEEC
Confidence 477899999 89988888876 999999997 5653 33443 23 378899998 6777776655 5899999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CcEEE----EEccccCCCeEEEEEc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRRLQ----VFADMHKEHINVVKFS 602 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s-~~~v~----~l~~~h~~~V~sI~fs 602 (721)
..+.. ............+.+++|+|++..+++++ .++.|++||+.+ ++... .+.......+..++|+
T Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 1ri6_A 114 EDGLP-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186 (343)
T ss_dssp ETTEE-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred CCCcc-------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence 52211 01122233445688999999999888888 789999999987 65432 2232234578899999
Q ss_pred CCCCcEEEEEECCCcEEEEECCC--CCceeEEEe---cCC----CCeEEEEEecCCCEEEEEe-CCCcEEEEEcC--CCc
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYTA---SSS----KGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR--GDP 670 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~---~~~----~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~--g~~ 670 (721)
|++..+++++..++.|++||+.. +........ ... .....++|+|+|++|+++. .++.|++|++. +..
T Consensus 187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~ 266 (343)
T 1ri6_A 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 266 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc
Confidence 99943555566899999999954 433222222 111 1233799999999887554 78999999997 222
Q ss_pred cc---cc--ccCeEEEEECCCC
Q 004969 671 FR---DF--NMSILAAYTRPSS 687 (721)
Q Consensus 671 l~---~~--~~~V~~v~fsP~~ 687 (721)
.. .. ...+..++|+|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~s~dg 288 (343)
T 1ri6_A 267 LSKEGFQPTETQPRGFNVDHSG 288 (343)
T ss_dssp EEEEEEEECSSSCCCEEECTTS
T ss_pred eEEeeeecCCCccceEEECCCC
Confidence 11 11 2347789999999
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=6.9e-17 Score=179.96 Aligned_cols=208 Identities=11% Similarity=0.023 Sum_probs=148.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----------eEEEEee---cCCCCCCeEEEEEeeCCCCEEE----EE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----------NIVSYIP---SFGAMNSVLGLCWLKKYPSKLI----AG 517 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----------~~i~~l~---~~~H~~~V~sl~fsp~d~~~La----Sg 517 (721)
.+..+++++ ++.++++|+.+| |+||+.... ....... ...+...|.+++|+ +++++|+ +|
T Consensus 38 ~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~sg 114 (434)
T 2oit_A 38 RSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMMSS 114 (434)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEEET
T ss_pred CccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEecc
Confidence 367899999 889999999998 999875310 0111110 01356789999998 6888888 78
Q ss_pred eCCCeEEEEEcCCCCCcc-cccccCcceeE-eccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEccccCC
Q 004969 518 SDNGSLKLYDIRHMPPSI-RGMHYGAGTVT-FDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHKE 594 (721)
Q Consensus 518 s~DGtVrIWDi~~~~~~~-~~~~~~~~~~~-~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~ 594 (721)
+.|++|++||+.+..... ........... ..|...|.+++|+|+ +..+++++.||+|++||++++..+....+ |..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence 899999999997641000 00000000111 125678999999998 78899999999999999999977766665 899
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-----CCCeE-EEEEecCCCEEEEE-eCCC------cE
Q 004969 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----SKGNV-MVCFSPDDHYLLGK-GSGT------SM 661 (721)
Q Consensus 595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-----~~~~v-sl~fSpdg~~Lasg-s~Dg------~I 661 (721)
.|.+++|+|+| .+|++|+.||+|++||++ +........+. |...+ +++|++++.++++. +.+| .+
T Consensus 194 ~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 194 AVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp CEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred ceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 99999999998 899999999999999998 43332222211 11234 89999999888654 3443 38
Q ss_pred EEEEcCC
Q 004969 662 FVQSLRG 668 (721)
Q Consensus 662 ~VWDl~g 668 (721)
++|+++.
T Consensus 272 ~i~~l~~ 278 (434)
T 2oit_A 272 VMALLPK 278 (434)
T ss_dssp EEEECCC
T ss_pred EEEEecc
Confidence 9999984
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.73 E-value=1.5e-15 Score=160.58 Aligned_cols=217 Identities=10% Similarity=0.051 Sum_probs=162.1
Q ss_pred eEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCC-------CeEEEEEeeCCCCEEEEEe--CCCeEEE
Q 004969 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-------SVLGLCWLKKYPSKLIAGS--DNGSLKL 525 (721)
Q Consensus 456 V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-------~V~sl~fsp~d~~~LaSgs--~DGtVrI 525 (721)
+..++|+| +++ +++++..++.|.+||..+++.+..+....... .+.+++|+ ++++++++++ .++.|.+
T Consensus 91 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEE
T ss_pred cceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEE
Confidence 66789999 777 45555668999999999999988877421111 27889998 6777666665 5889999
Q ss_pred EEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKF 601 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~f 601 (721)
||..+++. ...+. +...+.+++|+|++..+++++.++.|.+||+.+++.+..+.. ++...+..++|
T Consensus 169 ~d~~~~~~----------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 169 VDGGNIKL----------KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EETTTTEE----------EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EcCCCCce----------EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 99987543 12222 233468889999999999999999999999999998887763 24556888999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC-ccccc--ccC
Q 004969 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD-PFRDF--NMS 677 (721)
Q Consensus 602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~-~l~~~--~~~ 677 (721)
+|++..++++...++.|.+||..+++......... ...++|+|+|+++++++ .++.|.+||.... ....+ ...
T Consensus 239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence 99995455555556999999999886644444322 24689999999776665 6899999999733 33222 346
Q ss_pred eEEEEECCCC
Q 004969 678 ILAAYTRPSS 687 (721)
Q Consensus 678 V~~v~fsP~~ 687 (721)
+..++|+|++
T Consensus 316 ~~~~~~s~dg 325 (353)
T 3vgz_A 316 PNSLALSADG 325 (353)
T ss_dssp EEEEEECTTS
T ss_pred CCeEEEcCCC
Confidence 7889999999
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.72 E-value=2e-16 Score=186.17 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=165.8
Q ss_pred CeEEEEEeCCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEeecCCCC----------------------CCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTL-DG-----EIVVVNHENENIVSYIPSFGAM----------------------NSVLGLCW 506 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-DG-----~I~IWdl~tg~~i~~l~~~~H~----------------------~~V~sl~f 506 (721)
.|.+++|+| ||++|++++. || +|++||+.+++....+...++. ..|.+++|
T Consensus 38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 488999999 9999999998 88 9999999999887777643332 33789999
Q ss_pred eeCCCCEEEEEeCCCeEEEEEcCCC---CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969 507 LKKYPSKLIAGSDNGSLKLYDIRHM---PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR 583 (721)
Q Consensus 507 sp~d~~~LaSgs~DGtVrIWDi~~~---~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~ 583 (721)
+ +++++|++++. +.|.+||+.++ .. ..+ ..+...+..++|+|+|..++.++ ++.|++||+.+++
T Consensus 117 S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l--------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 117 S-PDAQRLLFPLG-GELYLYDLKQEGKAAV--RQL--------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp C-TTSSEEEEEET-TEEEEEESSSCSTTSC--CBC--------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred C-CCCCEEEEEeC-CcEEEEECCCCCcceE--EEc--------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 8 78999998887 89999999886 32 111 12335689999999999998887 4689999999887
Q ss_pred EEEEEccccCCC----------------eEEEEEcCCCCcEEEEEECCC-------------------------------
Q 004969 584 RLQVFADMHKEH----------------INVVKFSNHSPSIFATSSFDQ------------------------------- 616 (721)
Q Consensus 584 ~v~~l~~~h~~~----------------V~sI~fsPdg~~lLaSgs~Dg------------------------------- 616 (721)
....... +... +..++|+||| +.|++++.|+
T Consensus 184 ~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 QMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEEeccC-CccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 7655443 3322 4779999999 6777777665
Q ss_pred --cEEEEECCC-CCceeEEEecCCCCeE-EEEEecCCCEEEEEeC-----CCcEEEEEcCCCccc----cccc----CeE
Q 004969 617 --DVKLWDLRQ-KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS-----GTSMFVQSLRGDPFR----DFNM----SIL 679 (721)
Q Consensus 617 --tIrIWDlrs-~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~-----Dg~I~VWDl~g~~l~----~~~~----~V~ 679 (721)
.|++||+.+ ++...+.....+...+ .++| |||++|++++. +..|++||+.+.... .+.. .+.
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999988 7654332221344455 8999 99999997754 467999999843321 1111 345
Q ss_pred EEEECCCCCcccccccEEEEecCC
Q 004969 680 AAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 680 ~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
.++|+|++ .++++++..
T Consensus 341 ~~~~spdg-------~~~~~~~~~ 357 (741)
T 2ecf_A 341 SLRFLDDG-------SILWSSERT 357 (741)
T ss_dssp CCEECTTS-------CEEEEECTT
T ss_pred ceEECCCC-------eEEEEecCC
Confidence 78999999 666666544
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.71 E-value=1.5e-15 Score=159.95 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=152.4
Q ss_pred eEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCC
Q 004969 456 PRQFEYHPSISCLMVFGTL-DGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRH 530 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~ 530 (721)
+ +++|+| +++++++++. ++.|.+||..+++. ...+. .+..+..+++|+ +++++++++..++ .|.+||+.+
T Consensus 43 ~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 43 V-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp E-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTT
T ss_pred c-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCC
Confidence 5 899999 8886665555 89999999999887 66655 444555559998 7888888555553 999999987
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCc-EEEEECCCCcEE-----EEEccccCCCeEEEEEcC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKN-IALYDINSGRRL-----QVFADMHKEHINVVKFSN 603 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~-IrlWDl~s~~~v-----~~l~~~h~~~V~sI~fsP 603 (721)
++. ...+.......+++|+|++..+++++ .++. |.+|++.....+ ..+. ....+..++|+|
T Consensus 118 ~~~----------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~sp 185 (331)
T 3u4y_A 118 NKF----------ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTP 185 (331)
T ss_dssp TEE----------EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECT
T ss_pred CCe----------EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECC
Confidence 543 12233344568999999998766665 5588 999999864332 2222 456689999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCccc---cc----
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDPFR---DF---- 674 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~l~---~~---- 674 (721)
+|..+++++..++.|++||+.+++. ..+..+..+..+..++|+|+|+++++++ .++.|.+||+....+. .+
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 9944566666789999999998765 1133444444555799999999887665 4778999999843331 00
Q ss_pred ---c---cCeEEEEECCCC
Q 004969 675 ---N---MSILAAYTRPSS 687 (721)
Q Consensus 675 ---~---~~V~~v~fsP~~ 687 (721)
. .....++|+|++
T Consensus 266 ~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp CCCCGGGTTCCCEEECTTS
T ss_pred ccCCCCcccccceEECCCC
Confidence 1 122457999999
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.71 E-value=9.7e-16 Score=175.66 Aligned_cols=193 Identities=13% Similarity=0.119 Sum_probs=155.2
Q ss_pred EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc--CCCCCccccc
Q 004969 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI--RHMPPSIRGM 538 (721)
Q Consensus 461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi--~~~~~~~~~~ 538 (721)
|+| ++.++++++.|++|.+||..+++++.++.. ++. +.+++|+ +++++|++++.|++|++||+ .+++.
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~----- 214 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTK----- 214 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcE-----
Confidence 678 788999999999999999999999998873 332 8899998 79999999999999999999 55332
Q ss_pred ccCcceeEeccCCCeEEEEEec----CCCEEEEEeC-CCcEEEEECCCCcEEEEEccc---------cC-CCeEEEEEcC
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNS----MDELFLASGY-SKNIALYDINSGRRLQVFADM---------HK-EHINVVKFSN 603 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~---------h~-~~V~sI~fsP 603 (721)
...+.....+..++|+| ++.++++++. +++|.+||..+++++..+... |. ..+.++.++|
T Consensus 215 -----~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 215 -----VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp -----EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred -----EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 22333445578999999 9999999885 899999999999999887631 22 3789999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG 668 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g 668 (721)
+++.++++...++.|.+||..+.+...+..+........++|+|+|+++++++ .+++|.+||+..
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence 98788888899999999999886544333444333334789999999887665 588999999974
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=2.1e-15 Score=159.53 Aligned_cols=226 Identities=11% Similarity=0.053 Sum_probs=163.1
Q ss_pred CeEEEEEeCCCCCEEEEEEC-------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTL-------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIW 526 (721)
.+..++|+| +++++++++. ++.|.+||..+++.+..+.. ...+.+++|+ ++++ .++++..++.|.+|
T Consensus 42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATIN-NTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEEC-CCCCEEEEEecCCCEEEEE
Confidence 478899999 8888887774 56899999999998888764 2347788998 5666 55556668999999
Q ss_pred EcCCCCCcccccccCcce-eEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 527 DIRHMPPSIRGMHYGAGT-VTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~-~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
|..+++.... ...+... ........+.+++|+|+++.+++++ .++.|.+||..+++.+..+.. +...+..++|+|
T Consensus 117 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~ 194 (353)
T 3vgz_A 117 DAKTGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDS 194 (353)
T ss_dssp ETTTCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEET
T ss_pred eCCCCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECC
Confidence 9988664211 1110000 0000011268899999999888876 478899999999999988874 556688999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEecC--CCC-eEEEEEecCCCEEEEEeCC-CcEEEEEcC-CCcccccc-cC
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS--SKG-NVMVCFSPDDHYLLGKGSG-TSMFVQSLR-GDPFRDFN-MS 677 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~--~~~-~vsl~fSpdg~~Lasgs~D-g~I~VWDl~-g~~l~~~~-~~ 677 (721)
+| ..+++++.++.|.+||+.+++......... +.. ...++|+|+|+++++++.+ +.|++||+. +....... ..
T Consensus 195 dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 195 EG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 99 688888889999999999986544443311 222 3379999999988777654 899999997 33332221 12
Q ss_pred eEEEEECCCCC
Q 004969 678 ILAAYTRPSSK 688 (721)
Q Consensus 678 V~~v~fsP~~~ 688 (721)
...+.|+|+++
T Consensus 274 ~~~~~~s~dg~ 284 (353)
T 3vgz_A 274 SLAVLFNPARN 284 (353)
T ss_dssp CCCEEEETTTT
T ss_pred CceEEECCCCC
Confidence 35689999983
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.70 E-value=2.4e-15 Score=160.11 Aligned_cols=239 Identities=10% Similarity=0.132 Sum_probs=153.6
Q ss_pred CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~~ 531 (721)
.+..++|+| ++++++++.. ++.|++|++.++.....-....+...+..++|+ +++++|++++ .++.|.+|++...
T Consensus 41 ~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 41 NPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTT
T ss_pred CcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCC
Confidence 367899999 8884444432 689999999877643222212456778899998 7888888877 7899999999642
Q ss_pred CC-cc-ccccc-CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEE--EEccccCCCeEEEEEcCCC
Q 004969 532 PP-SI-RGMHY-GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQ--VFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 532 ~~-~~-~~~~~-~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~--~l~~~h~~~V~sI~fsPdg 605 (721)
.. .. ..... ............+.+++|+|++..+++...++.|++||+. +++... .+.......+..++|+|+|
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 21 10 00000 0000000112347889999999944444458899999998 554332 2222133467889999999
Q ss_pred CcEEEEEECCCcEEEEECCC--CCceeEEEecCC-------CCeEEEEEecCCCEEE-EEeCCCcEEEEEcC--CC--cc
Q 004969 606 PSIFATSSFDQDVKLWDLRQ--KPIQPCYTASSS-------KGNVMVCFSPDDHYLL-GKGSGTSMFVQSLR--GD--PF 671 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~~~~-------~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~--g~--~l 671 (721)
..+++++..++.|++|++.. ++.......... ..+..++|+|||++|+ +...++.|.+|++. +. .+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 43556667789999999874 433223222211 2244799999999885 45568999999986 21 11
Q ss_pred cc---cccCeEEEEECCCCCcccccccEEEEecC
Q 004969 672 RD---FNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 672 ~~---~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
.. +...+..++|+|++ ..|++++.
T Consensus 279 ~~~~~~~~~~~~~~~spdg-------~~l~v~~~ 305 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTE-------AFVVVVNQ 305 (347)
T ss_dssp EEEECSSSCCCEEEECTTS-------SEEEEEET
T ss_pred EEEecCCCCcCeEEECCCC-------CEEEEEEc
Confidence 11 13357889999999 65555544
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=7.8e-15 Score=154.36 Aligned_cols=213 Identities=12% Similarity=0.128 Sum_probs=153.4
Q ss_pred EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCcccccc
Q 004969 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~~~~~~ 539 (721)
|.+..+..+++++.++.|.+||..+++....+. .+...+ +++|+ ++++++++++. ++.|.+||..+++..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~----- 75 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPK----- 75 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCE-----
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCcee-----
Confidence 455345568888899999999999999988776 334556 99998 67776665554 899999999886531
Q ss_pred cCcceeEec-cCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969 540 YGAGTVTFD-EFDQLTSVHVNSMDELFLASGYS-K--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 540 ~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~D-g--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D 615 (721)
..... +..+..+++|+|++..++++..+ + .|++||+.+++.+..+. +...+.+++|+|+|..+++++..+
T Consensus 76 ----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 76 ----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp ----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT
T ss_pred ----EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC
Confidence 11122 22333449999999999955444 3 89999999999988877 455679999999995567777777
Q ss_pred Cc-EEEEECCCCCcee---EEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC-CCc---cccc--ccCeEEEEEC
Q 004969 616 QD-VKLWDLRQKPIQP---CYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR-GDP---FRDF--NMSILAAYTR 684 (721)
Q Consensus 616 gt-IrIWDlrs~~~~~---~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~-g~~---l~~~--~~~V~~v~fs 684 (721)
+. |++|++....... .........+..++|+|+|+++++++ .++.|++||+. +.. +..+ ...+..++|+
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s 229 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVS 229 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence 88 9999998643211 12233344556899999999776555 68899999997 333 3222 3467789999
Q ss_pred CCCC
Q 004969 685 PSSK 688 (721)
Q Consensus 685 P~~~ 688 (721)
|+++
T Consensus 230 pdg~ 233 (331)
T 3u4y_A 230 RDGS 233 (331)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9995
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.69 E-value=2.6e-15 Score=172.13 Aligned_cols=231 Identities=11% Similarity=0.058 Sum_probs=165.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEEC--CCCeEEEEeecCCCCCCeEEEEEeeC----CCCEEEEEe-CCCeEEEEEc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGS-DNGSLKLYDI 528 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl--~tg~~i~~l~~~~H~~~V~sl~fsp~----d~~~LaSgs-~DGtVrIWDi 528 (721)
+.+++|+| +++++++++.|++|++||+ .+++.+..+. +...+.+++|+ + +++++++++ .+++|.+||.
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEET
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEec
Confidence 78999999 9999999999999999999 8898888886 23568999998 6 888888887 5899999999
Q ss_pred CCCCCcccccccCcc---eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEE--EEccccCCCeEEEEEc
Q 004969 529 RHMPPSIRGMHYGAG---TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ--VFADMHKEHINVVKFS 602 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~--~l~~~h~~~V~sI~fs 602 (721)
.+.+.. ..+..... ...+.....+.++.++++++.++++. .++.|.+||..+++.+. .+. +...+..+.|+
T Consensus 256 ~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~s 332 (543)
T 1nir_A 256 ETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWD 332 (543)
T ss_dssp TTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEEC
T ss_pred cccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceEC
Confidence 886542 11111100 00111223688999999888776665 58999999999866544 443 66778899999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecC-CCEEEEEe-CCCcEEEEEcCC--------Cc
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPD-DHYLLGKG-SGTSMFVQSLRG--------DP 670 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpd-g~~Lasgs-~Dg~I~VWDl~g--------~~ 670 (721)
|+|..+++++..+++|.+||+.++++....... .|.+.....++|+ |..+++++ .|++|.+||+.. +.
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 999434555667899999999998665444321 1322221125787 66666665 589999999873 11
Q ss_pred ---ccccccCeEEEEECCCCCcccccccEEEEec
Q 004969 671 ---FRDFNMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 671 ---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
+..+...+..+.+||++ +.|.+++
T Consensus 413 v~~l~~~g~~~~~v~~~pdg-------~~l~v~~ 439 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKS-------SHLYVDT 439 (543)
T ss_dssp EEEEECSCSCCCCEECCTTC-------CEEEECC
T ss_pred EEEEEcCCCCceEEEcCCCC-------CcEEEec
Confidence 22334567789999999 6666665
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=4.4e-16 Score=173.44 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=124.1
Q ss_pred CeEEEEEeCCCCCEEE----EEECCCeEEEEECCCC--------eEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969 455 RPRQFEYHPSISCLMV----FGTLDGEIVVVNHENE--------NIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~La----sGs~DG~I~IWdl~tg--------~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DG 521 (721)
.|++++|+| ++++|+ +|+.||+|+|||+.++ +.+..+ ...+|...|.+++|+|.++.+|++++.||
T Consensus 94 ~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 599999999 899999 7889999999998654 221111 22378999999999966689999999999
Q ss_pred eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc------ccCCC
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEH 595 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~------~h~~~ 595 (721)
+|++||++++... .....|...|.+++|+|++..+++|+.||+|++||++ ++....+.. .|...
T Consensus 173 ~v~iwD~~~~~~~---------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 173 SIAVLQVTETVKV---------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp CEEEEEESSSEEE---------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred eEEEEEcCCCcce---------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence 9999999885321 1123356689999999999999999999999999999 666666543 12338
Q ss_pred eEEEEEcCCCCcEEE-EEECCCc------EEEEECCCC
Q 004969 596 INVVKFSNHSPSIFA-TSSFDQD------VKLWDLRQK 626 (721)
Q Consensus 596 V~sI~fsPdg~~lLa-Sgs~Dgt------IrIWDlrs~ 626 (721)
|.+++|++++ .+++ .++.||. +++||++..
T Consensus 243 v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 243 VLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999999987 4443 3445543 899999865
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=1.8e-15 Score=154.45 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=146.5
Q ss_pred EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CCCcccccccCcceeEecc
Q 004969 471 FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-MPPSIRGMHYGAGTVTFDE 549 (721)
Q Consensus 471 sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~~~~~~~~~~~~~~~~~~~ 549 (721)
.++.|++|++||+.+++..... .|...|.+++|+ +++++|++++ ++.|.+||+.+ ++.... ... .+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~-------~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DTG-------FA 83 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE---EESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEEC-CCT-------TC
T ss_pred CCCcceeEEEEeCCCCceeeec---cCCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEe-ccc-------cc
Confidence 3567899999999998876544 567899999998 7888888876 78999999988 654211 110 11
Q ss_pred CCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 550 FDQLTSVHVNSMDELFLASGY--SKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 550 ~~~V~sv~~sp~~~~lls~g~--Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
...+.+++|+|++..+++++. ++...+ ||..+++ ...+. +...+..++|+|++..++++++.|+.+++|++..
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 245788999999999999983 344444 5555554 34444 3345899999999944455888999999999643
Q ss_pred CCceeEEEecCCCCeE-EEEEecCCCEEEEEe-CCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEE
Q 004969 626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKG-SGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLA 698 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs-~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLA 698 (721)
.... ...+..+...+ .++|+|+|++++.++ .++.+.+|++. +.. +..+...+..+.|+|++ ..|+
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~l~ 232 (297)
T 2ojh_A 161 DSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-------DKVV 232 (297)
T ss_dssp TTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-------SEEE
T ss_pred CCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-------CEEE
Confidence 2111 23344444444 899999999888766 58889999875 333 33345578889999999 5555
Q ss_pred EecC
Q 004969 699 STDH 702 (721)
Q Consensus 699 Sgs~ 702 (721)
+++.
T Consensus 233 ~~~~ 236 (297)
T 2ojh_A 233 FVSY 236 (297)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5443
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.67 E-value=6.8e-15 Score=154.45 Aligned_cols=207 Identities=12% Similarity=0.126 Sum_probs=145.0
Q ss_pred CEEEEEECCCeEEEEECC-CCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-CeEEEEEcC--CCCCccccccc
Q 004969 467 CLMVFGTLDGEIVVVNHE-NEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKLYDIR--HMPPSIRGMHY 540 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~-tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-GtVrIWDi~--~~~~~~~~~~~ 540 (721)
.++++++.|+.|++|++. ++. .+..+ .|...+.+++|+ +++++|++++.+ +.|.+|++. ++...
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV---DVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE---ecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence 345555789999999995 343 23333 466788999998 688888888876 999999998 33321
Q ss_pred CcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC---CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CC
Q 004969 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FD 615 (721)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~---s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~D 615 (721)
....+.....+..++|+|++..+++++. ++.|.+||+. +++.+..+. ....+.+++|+|+| ..+++++ .+
T Consensus 76 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~~~~~ 150 (343)
T 1ri6_A 76 --FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDN-RTLWVPALKQ 150 (343)
T ss_dssp --EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTS-SEEEEEEGGG
T ss_pred --eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCC-CEEEEecCCC
Confidence 1112222346789999999998888775 7889999994 444555555 34568899999999 5666665 89
Q ss_pred CcEEEEECCC-CCceeEE----EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC--Ccc---ccc---------c
Q 004969 616 QDVKLWDLRQ-KPIQPCY----TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG--DPF---RDF---------N 675 (721)
Q Consensus 616 gtIrIWDlrs-~~~~~~~----~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g--~~l---~~~---------~ 675 (721)
+.|++||+.+ ++..... .......+..++|+|+|+++++++ .++.|.+|++.. ..+ ... .
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 9999999987 5443322 222333455899999999876655 789999999952 111 111 1
Q ss_pred cCeEEEEECCCCC
Q 004969 676 MSILAAYTRPSSK 688 (721)
Q Consensus 676 ~~V~~v~fsP~~~ 688 (721)
..+..++|+|+++
T Consensus 231 ~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 231 RWAADIHITPDGR 243 (343)
T ss_dssp CCEEEEEECTTSS
T ss_pred CCccceEECCCCC
Confidence 2456799999994
No 143
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.66 E-value=4.8e-14 Score=150.96 Aligned_cols=228 Identities=11% Similarity=0.104 Sum_probs=150.7
Q ss_pred CeEEEEEeCCCCCEEEEEECC----CeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLD----GEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D----G~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWD 527 (721)
.+..++|+| ++++|++++.+ |.|.+|++.. |+.........+......+++ +++++++++ .++.|.+|+
T Consensus 51 ~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 51 NPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEE
T ss_pred CCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEE
Confidence 477899999 89999998886 8999998865 544322222234556777776 567666665 689999999
Q ss_pred cCCCCCccccc--ccCcc--ee-EeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcE------E------EEEc
Q 004969 528 IRHMPPSIRGM--HYGAG--TV-TFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRR------L------QVFA 589 (721)
Q Consensus 528 i~~~~~~~~~~--~~~~~--~~-~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~------v------~~l~ 589 (721)
+.......... ..... .. ...+...+.+++|+|++..+++++. ++.|++|++..... + ....
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 97543211100 00000 00 0011233688999999998877764 78999998875431 1 1222
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCceeEEEecC---C-CCeEEEEEecCCCEEEEEeCC--CcEE
Q 004969 590 DMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCYTASS---S-KGNVMVCFSPDDHYLLGKGSG--TSMF 662 (721)
Q Consensus 590 ~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~~~~~~~---~-~~~vsl~fSpdg~~Lasgs~D--g~I~ 662 (721)
..+...+..++|+|+| +++++++ .++.|++||+.++.......... + .....++|+|||++|+++..+ +.|.
T Consensus 207 ~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 207 VAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp CCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred cCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 2255678899999999 5665555 68999999998775443333322 1 234489999999999777654 8999
Q ss_pred EEEcC---CC--ccccc--ccCeEEEEECCCC
Q 004969 663 VQSLR---GD--PFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 663 VWDl~---g~--~l~~~--~~~V~~v~fsP~~ 687 (721)
+|++. +. .+... ...+..++|+|++
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg 317 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNG 317 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEEECTTS
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEEECCCC
Confidence 99995 22 11111 2367789999999
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.66 E-value=3.6e-15 Score=174.70 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=156.5
Q ss_pred CeEEEEEeCCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL 525 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrI 525 (721)
.|.+++||| ||++|++++.+ +.|.+||+.+++........+|...+..++|+ ++++.|+.++. +.|++
T Consensus 62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~ 138 (723)
T 1xfd_A 62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYY 138 (723)
T ss_dssp TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEE
T ss_pred ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC-CCCCEEEEEEC-CeEEE
Confidence 488999999 99999999874 78889999988763222223455568899998 78899998886 79999
Q ss_pred EEcCCCCCcccccccCcceeEecc---------CCCeEEEEEecCCCEEEEEeCCC------------------------
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDE---------FDQLTSVHVNSMDELFLASGYSK------------------------ 572 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~---------~~~V~sv~~sp~~~~lls~g~Dg------------------------ 572 (721)
||+.+++.......+....+.... ...+.+++|+|++..+++++.|+
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 999886542111111111100000 11347899999999999887542
Q ss_pred ----------cEEEEECCCCcEEEEEccc-----cCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCCceeEEE
Q 004969 573 ----------NIALYDINSGRRLQVFADM-----HKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYT 633 (721)
Q Consensus 573 ----------~IrlWDl~s~~~v~~l~~~-----h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~~~~~~~ 633 (721)
.|++||+.+++....+... +...+..++|+||| +++++.+. +..|++||+.+++...+..
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 7999999988865666531 25678999999999 67766543 3579999999987654443
Q ss_pred ecCCCCe-----EEEEEecCCCEEEE--EeCCC------cEEEEE-cCCCc---cccc---ccCeEE-EEECCCC
Q 004969 634 ASSSKGN-----VMVCFSPDDHYLLG--KGSGT------SMFVQS-LRGDP---FRDF---NMSILA-AYTRPSS 687 (721)
Q Consensus 634 ~~~~~~~-----vsl~fSpdg~~Las--gs~Dg------~I~VWD-l~g~~---l~~~---~~~V~~-v~fsP~~ 687 (721)
.. +.+. ..++|+|||++|+. +..++ .|++|| ..+.. .+.. ...+.. ++|+|++
T Consensus 298 ~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 298 DE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG 371 (723)
T ss_dssp EE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred ec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC
Confidence 22 1121 25799999997775 44566 577788 44333 3322 234554 6899999
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=8.4e-15 Score=153.33 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=145.3
Q ss_pred eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEe------------C
Q 004969 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGS------------D 519 (721)
Q Consensus 456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs------------~ 519 (721)
+..++|+| +++++ +++..++.|.+||+.+++.+..+.... |...+.+++|+ ++++++++++ .
T Consensus 36 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEEC
T ss_pred ccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC-CCCCEEEEEeccccccccccccc
Confidence 67799999 77655 566678999999999999887776422 12257789998 6888888876 5
Q ss_pred CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc-------
Q 004969 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH------- 592 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h------- 592 (721)
++.|.+||+.+++. ...+.....+.+++|+|++..++++ ++.|++||+.+++.+..+...+
T Consensus 114 ~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 181 (337)
T 1pby_B 114 PTRVALYDAETLSR----------RKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYA 181 (337)
T ss_dssp CCEEEEEETTTTEE----------EEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred CceEEEEECCCCcE----------EEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCcee
Confidence 79999999987543 1122223456788999999988887 6889999999887765554211
Q ss_pred ----------------------------------------------------------CCCeEEEEEcCCCCcEEEEEEC
Q 004969 593 ----------------------------------------------------------KEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 593 ----------------------------------------------------------~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
...+.+++|+|+| ..++++
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~-- 258 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA-- 258 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--
Confidence 1234568999999 677776
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++.|++||+.+++... .+.....+.+++|+|+|+++++++.++.|++||+..
T Consensus 259 ~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 259 YNVLESFDLEKNASIK--RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp ESEEEEEETTTTEEEE--EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred CCeEEEEECCCCcCcc--eecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 7999999999875433 333334455899999999999999999999999973
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=2e-14 Score=150.49 Aligned_cols=208 Identities=12% Similarity=0.060 Sum_probs=148.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-CeEEEEEeeCCCCE-EEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-~V~sl~fsp~d~~~-LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+++++++.++.|.+||..+++.+..+.. ++.. .+.+++|+ ++++. +++++.++.|.+||+.+++............
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4789999999999999999998888764 2222 47889998 56655 4666678999999998865421100000000
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASG------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
+...+.+++|+|++..+++++ .++.|.+||+.+++.+..+. ....+.+++|+|+| +.++++
T Consensus 80 ----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~ 152 (337)
T 1pby_B 80 ----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDG-SKLYGL 152 (337)
T ss_dssp ----EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTS-SCEEEE
T ss_pred ----ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCC-CEEEEe
Confidence 011467889999999988886 57999999999998888776 34567889999999 556665
Q ss_pred ECCCcEEEEECCCCCceeEEEecC--------------------------------------------------------
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASS-------------------------------------------------------- 636 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~-------------------------------------------------------- 636 (721)
++.|++||+.+++.........
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6889999998764322211111
Q ss_pred --------C-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-ccccc--ccCeEEEEECCCC
Q 004969 637 --------S-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 637 --------~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~~--~~~V~~v~fsP~~ 687 (721)
+ .....++|+|+|++++++ ++.|++||+... ....+ ...+..++|+|++
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 291 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG 291 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCC
Confidence 0 012258999999999988 799999999743 22222 3467889999999
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.65 E-value=5.4e-16 Score=181.71 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=157.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCCCCEEEEEeCC---------CeE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSDN---------GSL 523 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d~~~LaSgs~D---------GtV 523 (721)
+.+++|+| +++++++ +.||+|++||+.+++....+. +|.. .|.+++|+ +++++|++++.+ +.+
T Consensus 19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEEC-CCCCEEEEEecCccceeecceeeE
Confidence 66789999 8887766 789999999999998877765 4443 49999998 789999999874 788
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC--------
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-------- 595 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~-------- 595 (721)
.+||+.+++.. .+.... .+...+..++|+|+|..++.++. +.|++||+.+++..+.... +...
T Consensus 94 ~~~d~~~~~~~--~l~~~~-----~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~ 164 (723)
T 1xfd_A 94 VLSKIPHGDPQ--SLDPPE-----VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST-GKEGVIYNGLSD 164 (723)
T ss_dssp EEEESSSCCCE--ECCCTT-----CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC-CBTTTEEEEECC
T ss_pred EEEECCCCceE--eccCCc-----cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC-CCCCceECcccc
Confidence 89999986541 111110 12234788999999999998886 7899999999887766654 3333
Q ss_pred ----------eEEEEEcCCCCcEEEEEECCC----------------------------------cEEEEECCCCCceeE
Q 004969 596 ----------INVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQPC 631 (721)
Q Consensus 596 ----------V~sI~fsPdg~~lLaSgs~Dg----------------------------------tIrIWDlrs~~~~~~ 631 (721)
+.+++|+||| +.|++++.|+ .|++||+.+++. .
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~ 241 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--D 241 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--C
T ss_pred eeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--e
Confidence 3789999999 7788776543 799999988753 2
Q ss_pred EEecCC------CCeE-EEEEecCCCEEEEEeCC----CcEEEEEcCCCcccc-----cccCe----EEEEECCCCC
Q 004969 632 YTASSS------KGNV-MVCFSPDDHYLLGKGSG----TSMFVQSLRGDPFRD-----FNMSI----LAAYTRPSSK 688 (721)
Q Consensus 632 ~~~~~~------~~~v-sl~fSpdg~~Lasgs~D----g~I~VWDl~g~~l~~-----~~~~V----~~v~fsP~~~ 688 (721)
..+..+ ...+ .++|||||+++++.... ..|++||+.+..... +...+ ..+.|+|+++
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence 233322 3344 79999999999776533 478999997433221 12223 2789999993
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.65 E-value=3.3e-15 Score=171.34 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=162.3
Q ss_pred CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~ 529 (721)
.|.+++|+| ||+.||+++. ||+++||++.+++..+ +. .|. ..+..++|+ ++ ..+++++. +...++|.+.
T Consensus 23 ~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~-lt--~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 23 EKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVK-LN--REPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp CEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEE-CC--SSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEEE
T ss_pred chheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEe-ee--cccccccccccCC-CC-eEEEEeccCCCCcceEEEEEe
Confidence 589999999 9999999887 9999999997665543 33 344 678999998 45 67776664 4555665543
Q ss_pred C----CCCccccccc---------Cc----------cee----------EeccCCCeEEEEEecCCCEEEEEeCC----C
Q 004969 530 H----MPPSIRGMHY---------GA----------GTV----------TFDEFDQLTSVHVNSMDELFLASGYS----K 572 (721)
Q Consensus 530 ~----~~~~~~~~~~---------~~----------~~~----------~~~~~~~V~sv~~sp~~~~lls~g~D----g 572 (721)
. ....+....+ .. ... .+... +..+++|+|+|..+++++.+ +
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PGFGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SSCEEEEEEETTEEEEEEEEETTEE
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CCceEEECCCCCEEEEEEEcCCCCe
Confidence 3 2111100000 00 000 00000 11678999999999988766 7
Q ss_pred cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCCeE-EEE-----
Q 004969 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVC----- 644 (721)
Q Consensus 573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~----- 644 (721)
.|++||+.+++.. .+.. |...+..++|+||| +.++++..++ .|++||+.+++.. .+.++...+ .++
T Consensus 176 ~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDS-GEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEETTTCCCE-EECC-SSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEE
T ss_pred EEEEEcCCCCCce-Eeec-CCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhcccc
Confidence 8999999988765 5554 88889999999999 7888888888 8999999988653 444554444 455
Q ss_pred ---EecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 645 ---FSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 645 ---fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|+|||.++++++.++.+++|++ |+........+..++|+ ++ .++++++..
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~~v~~~~~s-dg-------~~l~~~s~~ 302 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID-GERVEAPQGNHGRVVLW-RG-------KLVTSHTSL 302 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET-TEEECCCSSEEEEEEEE-TT-------EEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccCCCceEEEEec-CC-------EEEEEEcCC
Confidence 9999999999999999999999 76655556678889999 88 566655543
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.64 E-value=6.9e-15 Score=172.16 Aligned_cols=223 Identities=10% Similarity=0.096 Sum_probs=158.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC----
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH---- 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~---- 530 (721)
.|.+++|+| + +.++.+. +++|++||+.+++..... .+...+.+++|+ ++++.|+++ .|+.|++||+.+
T Consensus 83 ~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 83 PSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVTYLF---DTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEEEEE---CCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred CceeEEECC-C-CeEEEEE-CCEEEEEECCCCceEEcc---CCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCccccc
Confidence 489999999 6 5555554 599999999988765544 455678889998 788888885 689999999988
Q ss_pred -CCCcccccccCcce-----eEeccCCCeEEEEEecCCCEEEEEe---------------------------------CC
Q 004969 531 -MPPSIRGMHYGAGT-----VTFDEFDQLTSVHVNSMDELFLASG---------------------------------YS 571 (721)
Q Consensus 531 -~~~~~~~~~~~~~~-----~~~~~~~~V~sv~~sp~~~~lls~g---------------------------------~D 571 (721)
++.......+.... +.-.+...+.++.|+|++..+++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 65421111111100 0001112358899999999999987 34
Q ss_pred CcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCCC-CceeEEEecCCCC---e-
Q 004969 572 KNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQK-PIQPCYTASSSKG---N- 640 (721)
Q Consensus 572 g~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~Dg-----tIrIWDlrs~-~~~~~~~~~~~~~---~- 640 (721)
..|++||+.+++....... .|...+..++|+|+| +.+++++.++ .|++||+.++ ....+.... +.. .
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~~~~ 312 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-DKHYVEPL 312 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-CSSCCCCC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-CCCeECcc
Confidence 6799999998886554432 367789999999999 7788877775 8999999988 333333221 221 1
Q ss_pred EEEEEec--CCCEEEEEeCCCcEEEEEcC--CCcc---cccccCeEE-EEECCCC
Q 004969 641 VMVCFSP--DDHYLLGKGSGTSMFVQSLR--GDPF---RDFNMSILA-AYTRPSS 687 (721)
Q Consensus 641 vsl~fSp--dg~~Lasgs~Dg~I~VWDl~--g~~l---~~~~~~V~~-v~fsP~~ 687 (721)
..++|+| ||+++++++.++.+++|.+. +... ..+...+.. ++|+|++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg 367 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG 367 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC
Confidence 2579999 99999999999988888764 4433 333445766 7999999
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=1.4e-14 Score=152.70 Aligned_cols=215 Identities=8% Similarity=0.056 Sum_probs=149.0
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
+++++ ++.++++++.+++|++||..+++.+..+.. +....+..++|+ ++++.+ +++..++.|.+||+.+++.....
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s-~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEEC-CCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45666 788999999999999999999998888764 222257789998 677654 56667899999999875432110
Q ss_pred cccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------------CcEEEEECCCCc---EEEEEccccCCCeEEEEEc
Q 004969 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------------KNIALYDINSGR---RLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------------g~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fs 602 (721)
........ ....+..++|+|++..+++++.+ +.|.+||+.+++ .+..+. +...+.+++|+
T Consensus 82 ~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s 156 (349)
T 1jmx_B 82 NLSSVPGE---VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAA 156 (349)
T ss_dssp ESCCSTTE---EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEEC
T ss_pred Eccccccc---ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeEC
Confidence 00000000 01236789999999999998865 899999999844 334444 44568899999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEecC----------------------------------------------
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---------------------------------------------- 636 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~---------------------------------------------- 636 (721)
|+| ++ ++++ +.|++||+.+++.........
T Consensus 157 ~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 157 DDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp TTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 999 54 4444 349999998876443322211
Q ss_pred ---------------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCc-ccc--cccCeEEEEECCCC
Q 004969 637 ---------------------SKGNVMVCFSP-DDHYLLGKGSGTSMFVQSLRGDP-FRD--FNMSILAAYTRPSS 687 (721)
Q Consensus 637 ---------------------~~~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~-l~~--~~~~V~~v~fsP~~ 687 (721)
......++|+| +|++++++ ++.|++||+.... ... ....+..++|+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 306 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG 306 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCC
Confidence 00122567789 99999988 8899999998433 222 23457789999998
No 151
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.63 E-value=5.4e-15 Score=173.88 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
|.+++|+| |+++|++++. +.|++||+.++ ... .+. .|...+..++|+ +++++|+.++. +.|.+||+.+++
T Consensus 111 v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~--~~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR-QLT--HGEGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC-BCC--CSSSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTE
T ss_pred cceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE-Ecc--cCCcccccccCC-CCCCEEEEEeC-CcEEEEecCCCC
Confidence 67899999 9999999986 99999999987 433 333 667889999999 78999988874 699999998854
Q ss_pred CcccccccCcceeEec--------cCCCeEEEEEecCCCEEEEEeCCC--------------------------------
Q 004969 533 PSIRGMHYGAGTVTFD--------EFDQLTSVHVNSMDELFLASGYSK-------------------------------- 572 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~--------~~~~V~sv~~sp~~~~lls~g~Dg-------------------------------- 572 (721)
..... ..+...+... ....+.+++|+|++..+++++.|+
T Consensus 184 ~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 184 QMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 32111 1111101000 011257899999999999987665
Q ss_pred -cEEEEECCC-CcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEECCCCCceeEEEecCCCC--eE-
Q 004969 573 -NIALYDINS-GRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQKPIQPCYTASSSKG--NV- 641 (721)
Q Consensus 573 -~IrlWDl~s-~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~-----DgtIrIWDlrs~~~~~~~~~~~~~~--~v- 641 (721)
.|++||+.+ ++....... .|...+..++| |+| +.|++++. +..|++||+.+++...+........ .+
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999998 876554432 37788999999 999 56665543 5679999999987655544322111 12
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcC--CC--cccccccCeEEE-EECCCC
Q 004969 642 MVCFSPDDHYLLGKGSGTSMFVQSLR--GD--PFRDFNMSILAA-YTRPSS 687 (721)
Q Consensus 642 sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~--~l~~~~~~V~~v-~fsP~~ 687 (721)
.++|+|||+++++++.+|.++||.+. +. .+..+...+..+ .|+|++
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTT
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCC
Confidence 68999999999999999977777654 44 223334567776 599999
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.62 E-value=3e-14 Score=150.09 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=144.2
Q ss_pred eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCC----CCCeEEEEEeeCCCCEEEEEeCC----------
Q 004969 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGA----MNSVLGLCWLKKYPSKLIAGSDN---------- 520 (721)
Q Consensus 456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H----~~~V~sl~fsp~d~~~LaSgs~D---------- 520 (721)
+..++|+| +++++ +++..++.|.+||+.+++....+..... ...+.+++|+ ++++++++++.+
T Consensus 45 ~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 45 PGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEE
T ss_pred CceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC-CCCCEEEEEccccccccccccc
Confidence 67899999 77755 5556789999999999998877763211 2347789998 788888888865
Q ss_pred --CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc------
Q 004969 521 --GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH------ 592 (721)
Q Consensus 521 --GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h------ 592 (721)
+.|.+||+.+++.. .....+.+...+.+++|+|++. +++++. .|.+||+.+++.+..+....
T Consensus 123 ~~~~i~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~ 192 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEA-------KPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGY 192 (349)
T ss_dssp CCCEEEEEEGGGGGGB-------CCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred CCCeEEEEECCCcccc-------ceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccc
Confidence 89999999874321 0112233444688899999998 666543 49999999998877665311
Q ss_pred -------------------------------------------------------------CCCeEEEEEcC-CCCcEEE
Q 004969 593 -------------------------------------------------------------KEHINVVKFSN-HSPSIFA 610 (721)
Q Consensus 593 -------------------------------------------------------------~~~V~sI~fsP-dg~~lLa 610 (721)
...+..++|+| ++ .+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~ 271 (349)
T 1jmx_B 193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIY 271 (349)
T ss_dssp CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEE
T ss_pred cCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEE
Confidence 01345677889 88 6777
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++ ++.|++||+.+++..... ........++|+|+|++|++++.++.|++||+..
T Consensus 272 ~~--~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRKLIKAA--NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EE--ESEEEEEETTTTEEEEEE--ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EE--cCeEEEEECccCeEEEEE--cCCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 77 889999999987543333 3333445899999999999888899999999973
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.61 E-value=1.7e-14 Score=168.75 Aligned_cols=218 Identities=11% Similarity=0.164 Sum_probs=154.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCC--------------eEEEEEeeCCCCEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNS--------------VLGLCWLKKYPSKLIA 516 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~--------------V~sl~fsp~d~~~LaS 516 (721)
+.+++|+| +|++|+++ .++.|++|++.+ ++...... .+... +.++.|+ +++++|++
T Consensus 123 ~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~--~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~ 197 (706)
T 2z3z_A 123 TASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI--DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAF 197 (706)
T ss_dssp CTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS--CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEE
T ss_pred ccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEecc--CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEE
Confidence 66789999 99999985 689999999998 77655433 22222 4789998 78999999
Q ss_pred Ee---------------------------------CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC
Q 004969 517 GS---------------------------------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE 563 (721)
Q Consensus 517 gs---------------------------------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~ 563 (721)
++ .++.|.+||+.+++...... ...+...+.+++|+|++.
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-------GEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-------CSCTTCEEEEEEECTTSS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-------CCCCceeEeeEEEECCCC
Confidence 87 45789999998754311100 012334589999999999
Q ss_pred EEEEEeCCC-----cEEEEECCCCcEEEEEc-cccCC---CeEEEEEcC--CCCcEEEEEECCCcEEEEECC-CCCceeE
Q 004969 564 LFLASGYSK-----NIALYDINSGRRLQVFA-DMHKE---HINVVKFSN--HSPSIFATSSFDQDVKLWDLR-QKPIQPC 631 (721)
Q Consensus 564 ~lls~g~Dg-----~IrlWDl~s~~~v~~l~-~~h~~---~V~sI~fsP--dg~~lLaSgs~DgtIrIWDlr-s~~~~~~ 631 (721)
.+++++.++ .|++||+.+++....+. ..+.. .+..++|+| +| .++++++.|+.+++|++. ++. ..
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EE
Confidence 999887665 89999999984433332 21222 246789999 98 789999999999999876 332 23
Q ss_pred EEecCCCCeE-E-EEEecCCCEEEEEeCC-C----cEEEEEcCCCccc--ccccCeEEEEECCCCC
Q 004969 632 YTASSSKGNV-M-VCFSPDDHYLLGKGSG-T----SMFVQSLRGDPFR--DFNMSILAAYTRPSSK 688 (721)
Q Consensus 632 ~~~~~~~~~v-s-l~fSpdg~~Lasgs~D-g----~I~VWDl~g~~l~--~~~~~V~~v~fsP~~~ 688 (721)
..+..+...+ . ++|+|+|+.|+.++.+ + .|+.||+.+.... .+...+..++|+|+++
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGS 413 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSS
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCC
Confidence 4445555545 4 7999999988766544 3 5677777643322 2345788999999993
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.61 E-value=1.8e-14 Score=177.14 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=166.1
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC---------CCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG---------AMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~---------H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
+...+|+| ++++++.+. ++.|.+|++..+... .+.... |...+.+++|+|+++..+++++ ++.|.+|
T Consensus 247 ~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~ 322 (1045)
T 1k32_A 247 YYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQ 322 (1045)
T ss_dssp SCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEE
T ss_pred cceeeEcC-CCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEE
Confidence 45679999 889888874 899999999654443 444211 3446899999845778888777 7899999
Q ss_pred EcCCCCCcccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCCCcEE-EEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYSKNIA-LYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~Dg~Ir-lWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
++.++... . ...+.. .+..++|+ ++..+++++.++.+. +||+.+++... +.+ |...+..++|+|+
T Consensus 323 ~~~~~~~~--~--------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~-~~~~~~~~~~SpD 389 (1045)
T 1k32_A 323 DVSGTYVL--K--------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEE-NLGNVFAMGVDRN 389 (1045)
T ss_dssp CTTSSBEE--E--------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCC-CCCSEEEEEECTT
T ss_pred cCCCCceE--E--------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecC-CccceeeeEECCC
Confidence 99875321 1 112333 57889999 888999988888888 99998776543 444 8889999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC----------cEEEEEcCCCcc--
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT----------SMFVQSLRGDPF-- 671 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----------~I~VWDl~g~~l-- 671 (721)
| ..+++++.++.|++||+.+++...+ ..++.+.+ .++|||||++|++++.++ .|++||+.+...
T Consensus 390 G-~~la~~~~~~~v~~~d~~tg~~~~~--~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~ 466 (1045)
T 1k32_A 390 G-KFAVVANDRFEIMTVDLETGKPTVI--ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 466 (1045)
T ss_dssp S-SEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred C-CEEEEECCCCeEEEEECCCCceEEe--ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE
Confidence 9 7999999999999999998865433 33455554 799999999999887654 899999985433
Q ss_pred -cccccCeEEEEECCCCCcccccccEEEEecC
Q 004969 672 -RDFNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 672 -~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
..+...+..++|+|++ ..|++++.
T Consensus 467 l~~~~~~~~~~~~spdG-------~~l~~~s~ 491 (1045)
T 1k32_A 467 ATTENSHDYAPAFDADS-------KNLYYLSY 491 (1045)
T ss_dssp CSCSSSBEEEEEECTTS-------CEEEEEES
T ss_pred eeCCCcccCCceEcCCC-------CEEEEEec
Confidence 3345568889999999 66666654
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.60 E-value=1.9e-13 Score=145.27 Aligned_cols=204 Identities=8% Similarity=0.078 Sum_probs=140.4
Q ss_pred CeEEEEEeCCCCCEEEEEE-CCCeEEEEECC-CCe--EEEEeecCC-------CCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969 455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHE-NEN--IVSYIPSFG-------AMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~-tg~--~i~~l~~~~-------H~~~V~sl~fsp~d~~~LaSgs~DGtV 523 (721)
.+..++|+| +++++++++ .++.|.+|++. +|. .+..+...+ +...+.+++|+ ++++++++...++.|
T Consensus 87 ~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v 164 (347)
T 3hfq_A 87 PPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKV 164 (347)
T ss_dssp CCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEE
T ss_pred CCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEE
Confidence 478899999 899888887 78999999995 333 233332211 12358899998 577777777778999
Q ss_pred EEEEcCC-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC--CcE--EEEEccccC----
Q 004969 524 KLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS--GRR--LQVFADMHK---- 593 (721)
Q Consensus 524 rIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s--~~~--v~~l~~~h~---- 593 (721)
.+|++.. +..... ..........+..++|+|++..+++++ .++.|.+|++.. ++. +..+.. ..
T Consensus 165 ~~~~~~~~g~~~~~------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~ 237 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQ------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IPADYT 237 (347)
T ss_dssp EEEEECTTSCEEEE------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SCTTCC
T ss_pred EEEEECCCCcEEEe------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cCCCCC
Confidence 9999983 321100 011111223567899999999777765 578999999874 543 223322 22
Q ss_pred --CCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCC-eEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004969 594 --EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKG-NVMVCFSPDDHYLLGKGSG-TSMFVQSLR 667 (721)
Q Consensus 594 --~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~D-g~I~VWDl~ 667 (721)
..+..++|+|+|..+++++..++.|.+||+.. +....+.....+.. +..++|+|||++|++++.+ +.|.+|++.
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 45889999999944556777899999999973 23334444444333 4489999999999888765 899999665
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=165.71 Aligned_cols=214 Identities=10% Similarity=0.002 Sum_probs=150.6
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCCCCEEEEEeC---------CCeEEE
Q 004969 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSD---------NGSLKL 525 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d~~~LaSgs~---------DGtVrI 525 (721)
.++|+| ++.+++ .+.||+|++||+.+++....+. +|.. .+.+++|+ +++++|++++. ++.|++
T Consensus 20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEE
Confidence 678999 776554 4579999999999998877665 3322 48899998 79999998876 799999
Q ss_pred EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe---------
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI--------- 596 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V--------- 596 (721)
||+.+++.... ..+ ...+..++|+|+|..++.+. ++.|++||+.+++..+....++...|
T Consensus 95 ~d~~~g~~~~~--------~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 95 YDLSNGEFVRG--------NEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp EETTTTEECCS--------SCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred EECCCCccccc--------eec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 99988643100 000 13578899999999998875 78999999998876554322233322
Q ss_pred --------EEEEEcCCCCcEEEEEECCC----------------------------------cEEEEECCCCCce---eE
Q 004969 597 --------NVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQ---PC 631 (721)
Q Consensus 597 --------~sI~fsPdg~~lLaSgs~Dg----------------------------------tIrIWDlrs~~~~---~~ 631 (721)
.+++|+||| +.|++++.|. .|++||+.+++.. .+
T Consensus 164 ~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 164 EEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 489999999 7888877552 7889999887532 11
Q ss_pred ---EEecCCCCeE-EEEEecCCCEEEEEeCCC----cEEEEE----cCCCc----c----cccccCeE-----EEEECCC
Q 004969 632 ---YTASSSKGNV-MVCFSPDDHYLLGKGSGT----SMFVQS----LRGDP----F----RDFNMSIL-----AAYTRPS 686 (721)
Q Consensus 632 ---~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----~I~VWD----l~g~~----l----~~~~~~V~-----~v~fsP~ 686 (721)
..+.++...+ .++||||++++++....+ .|++|| +.+.. + ..+...+. .+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1122455555 899999988777754332 488899 65322 2 12334454 7889999
Q ss_pred CC
Q 004969 687 SK 688 (721)
Q Consensus 687 ~~ 688 (721)
++
T Consensus 323 g~ 324 (719)
T 1z68_A 323 AI 324 (719)
T ss_dssp SS
T ss_pred CC
Confidence 94
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=3.9e-12 Score=131.48 Aligned_cols=225 Identities=11% Similarity=0.152 Sum_probs=161.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----FGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~ 529 (721)
.|.+++++| ++.++++...++.|.+||.. ++.+..+.. .+|...+.++++.++++.++++... ++.|.+||..
T Consensus 31 ~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 31 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 599999999 88988888899999999987 666666643 1345678999995456666666543 8899999943
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~l 608 (721)
. +.. ... ...+...+.++++++++..+++...++.|.+||.. ++.+..+.. .+...+..++++|+| ++
T Consensus 109 g-~~~-~~~-------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l 177 (286)
T 1q7f_A 109 G-QFV-RKF-------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EI 177 (286)
T ss_dssp S-CEE-EEE-------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EE
T ss_pred C-cEE-EEe-------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CE
Confidence 3 221 110 01122457899999988877666678899999964 666666642 245678999999998 78
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCC-cEEEEEcCCCcccccc-----cCeEEE
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGT-SMFVQSLRGDPFRDFN-----MSILAA 681 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg-~I~VWDl~g~~l~~~~-----~~V~~v 681 (721)
+++...++.|++||.... ....+...++ ..+..++++++|+++++...++ .|.+|+..+..+..+. ..+..+
T Consensus 178 ~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE
T ss_pred EEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeE
Confidence 888888999999998543 2222222222 3455899999999988888776 9999998876544331 237789
Q ss_pred EECCCCCcccccccEEEEe
Q 004969 682 YTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 682 ~fsP~~~~~~v~v~lLASg 700 (721)
+++|++ .++++.
T Consensus 257 ~~~~~g-------~l~vs~ 268 (286)
T 1q7f_A 257 ALMDDG-------SVVLAS 268 (286)
T ss_dssp EEETTT-------EEEEEE
T ss_pred EECCCC-------cEEEEC
Confidence 999999 788774
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=3e-13 Score=145.91 Aligned_cols=231 Identities=9% Similarity=0.012 Sum_probs=152.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCE--EEEEe-------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSK--LIAGS------------- 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~--LaSgs------------- 518 (721)
.+..++|+| +++++++++.+ .|.+|++. +|+.........+ +.+.+++|+ +++++ +++++
T Consensus 41 ~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 41 PISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC-CCCCEEEEEEecCCcceeccceeec
Confidence 377899999 89999988888 99999997 7876544332111 234557887 67773 45553
Q ss_pred CCCeEEEEEcCC-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC-CCcEE--EEEcc-cc
Q 004969 519 DNGSLKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN-SGRRL--QVFAD-MH 592 (721)
Q Consensus 519 ~DGtVrIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~-s~~~v--~~l~~-~h 592 (721)
.+|++.+|++.. +.. .... ......+...+.+++|+|++..++++.. ++.|++||+. +++.. ..+.. .|
T Consensus 117 ~~g~v~v~~~~~~g~~-~~~~----~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL-EKNV----QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SCCEEEEEEECTTCCE-EEEE----EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CCceEEEEccCCCCcC-cceE----eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 689999999974 322 1100 0001123456899999999998887764 6899999998 77653 33331 14
Q ss_pred CCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECC--CCCcee----EEEecC----CC-------CeEEEE-EecCCCEEE
Q 004969 593 KEHINVVKFSNHSPSIFATSS-FDQDVKLWDLR--QKPIQP----CYTASS----SK-------GNVMVC-FSPDDHYLL 653 (721)
Q Consensus 593 ~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlr--s~~~~~----~~~~~~----~~-------~~vsl~-fSpdg~~La 653 (721)
...+..++|+|+| +++++++ .++.|.+|++. +++... +..+.. +. ....++ |+|||++|+
T Consensus 192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 5679999999999 5666665 47899999875 454321 112221 12 234899 999999988
Q ss_pred EEeCC-C-----cEEEEEcC-CCcccc-------cccCeEEEEECC---CCCcccccccEEEEecC
Q 004969 654 GKGSG-T-----SMFVQSLR-GDPFRD-------FNMSILAAYTRP---SSKSEIVKVNLLASTDH 702 (721)
Q Consensus 654 sgs~D-g-----~I~VWDl~-g~~l~~-------~~~~V~~v~fsP---~~~~~~v~v~lLASgs~ 702 (721)
+++.+ + .|.+|++. ...+.. +...+..++|+| ++ ..|++++.
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-------~~l~v~~~ 329 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-------EWMAITDD 329 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-------TEEEEECS
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-------CEEEEEEc
Confidence 77543 2 89999985 222221 222455678888 67 56666554
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.52 E-value=3e-13 Score=166.30 Aligned_cols=211 Identities=12% Similarity=0.155 Sum_probs=163.2
Q ss_pred CeEEEEEe-CCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-CeEEEEEeeCCCCEEEEEeCCCeEE-EEEcCCC
Q 004969 455 RPRQFEYH-PSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSKLIAGSDNGSLK-LYDIRHM 531 (721)
Q Consensus 455 ~V~~lafs-P~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-~V~sl~fsp~d~~~LaSgs~DGtVr-IWDi~~~ 531 (721)
.+.+++|+ | +++++++++ ++.|.+|+..++.... +. .|.. .+..++|+ +++.+++++.++.+. +||+.++
T Consensus 297 ~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 297 SKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp GGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC
T ss_pred ccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC
Confidence 47899999 9 899888888 8899999998877543 33 5666 89999997 788899998888888 9998875
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
... ... .+...+..++|+|++..+++++.++.|++||+.+++....+.+ |...+.+++|+|+| +++++
T Consensus 370 ~~~---------~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG-~~la~ 437 (1045)
T 1k32_A 370 KAE---------KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNS-RFIAY 437 (1045)
T ss_dssp CEE---------ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTS-CEEEE
T ss_pred Cce---------Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCC-CeEEE
Confidence 421 111 3345689999999999999999999999999999998877765 88999999999999 67777
Q ss_pred EECCC----------cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcc-cccccCeE
Q 004969 612 SSFDQ----------DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF-RDFNMSIL 679 (721)
Q Consensus 612 gs~Dg----------tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l-~~~~~~V~ 679 (721)
++.++ .|++||+.+++ ...+..+.... .++|+|||++|+.++.++...+|+.....+ ......+.
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred EecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 76544 89999999874 34455555544 899999999999999999888998652211 11123444
Q ss_pred EEEECCCC
Q 004969 680 AAYTRPSS 687 (721)
Q Consensus 680 ~v~fsP~~ 687 (721)
.+.++++.
T Consensus 515 ~~~~~~~~ 522 (1045)
T 1k32_A 515 VIPLIPGS 522 (1045)
T ss_dssp EEESSTTC
T ss_pred EEEeCCCC
Confidence 55555444
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=3.1e-13 Score=160.11 Aligned_cols=215 Identities=9% Similarity=0.009 Sum_probs=148.4
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-----CeEEEEEeeCCCCEEEEEeCC---------C
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDN---------G 521 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-----~V~sl~fsp~d~~~LaSgs~D---------G 521 (721)
..++.|+| ++.+++++ ||+|++||+.+|+....+. +|.. ...+++|+ +++++|+.++.+ +
T Consensus 19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccce
Confidence 45789999 88888886 9999999999999877766 4432 23457888 789999998886 5
Q ss_pred eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-----
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI----- 596 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V----- 596 (721)
.+.+||+.+++.. .+. .+...+...+|+|+|..++.+. ++.|++||+.+++..+....++...+
T Consensus 93 ~~~~~d~~~~~~~--~l~--------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 93 SYDIYDLNKRQLI--TEE--------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEETTTTEEC--CSS--------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEEEECCCCcEE--Ecc--------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 6679999986531 111 1334688999999999998874 68999999998875543222233222
Q ss_pred ------------EEEEEcCCCCcEEEEEECCC------------------------------------cEEEEECCC---
Q 004969 597 ------------NVVKFSNHSPSIFATSSFDQ------------------------------------DVKLWDLRQ--- 625 (721)
Q Consensus 597 ------------~sI~fsPdg~~lLaSgs~Dg------------------------------------tIrIWDlrs--- 625 (721)
..+.|+||| +.||.++.|. +|++||+.+
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred cccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 348999999 6777765332 478899887
Q ss_pred CCceeEEEec------CCCCeE-EEEEecCCCEEEEEeC----CCcEEEEEcCCCc-------cc-----ccccCe----
Q 004969 626 KPIQPCYTAS------SSKGNV-MVCFSPDDHYLLGKGS----GTSMFVQSLRGDP-------FR-----DFNMSI---- 678 (721)
Q Consensus 626 ~~~~~~~~~~------~~~~~v-sl~fSpdg~~Lasgs~----Dg~I~VWDl~g~~-------l~-----~~~~~V---- 678 (721)
+.......+. ++...+ .++|+|||+.++.... +..|++||+.+.. .. .+...+
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~ 320 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence 6321222332 244555 8999999997765533 2368999987432 22 233333
Q ss_pred -EEEEECCCCC
Q 004969 679 -LAAYTRPSSK 688 (721)
Q Consensus 679 -~~v~fsP~~~ 688 (721)
....|+|+++
T Consensus 321 ~~~p~fspDG~ 331 (740)
T 4a5s_A 321 PSEPHFTLDGN 331 (740)
T ss_dssp CCCCEECTTSS
T ss_pred CCCceEcCCCC
Confidence 3678999994
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=3.9e-12 Score=135.40 Aligned_cols=237 Identities=12% Similarity=0.116 Sum_probs=166.2
Q ss_pred CeEEEEEeCCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLD------------------------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY 510 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D------------------------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d 510 (721)
.|.+++++| +++++++...+ ++|.+||..+|+.+..+.. ++.....++++. ++
T Consensus 25 ~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d-~~ 101 (329)
T 3fvz_A 25 QVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFYLPHGLSID-TD 101 (329)
T ss_dssp CEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCSSEEEEEEC-TT
T ss_pred CceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccCCceEEEEC-CC
Confidence 589999999 89999888877 4799999999988766542 455688999998 68
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCcccccccCcc-eeEeccCCCeEEEEEec-CCCEEEEEe-CCCcEEEEECCCCcEEEE
Q 004969 511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG-TVTFDEFDQLTSVHVNS-MDELFLASG-YSKNIALYDINSGRRLQV 587 (721)
Q Consensus 511 ~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~-~~~~~~~~~V~sv~~sp-~~~~lls~g-~Dg~IrlWDl~s~~~v~~ 587 (721)
++++++...++.|++||.......+..+..... -....+......++++| ++..+++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 888888888999999998764211111110000 00011223578999999 566666665 589999999 56777777
Q ss_pred Ecc---------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-EEEEEecCCCEEEE---
Q 004969 588 FAD---------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLG--- 654 (721)
Q Consensus 588 l~~---------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-vsl~fSpdg~~Las--- 654 (721)
+.. ++-.....++++|+++.++++...++.|++||..+++.........+... ..++|+| +..+++
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 752 12234899999999448888888999999999997765444433333333 3889999 433333
Q ss_pred ----EeCCCcEEEEEcC-CCcccc------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 655 ----KGSGTSMFVQSLR-GDPFRD------FNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 655 ----gs~Dg~I~VWDl~-g~~l~~------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
...+..|++|+.. +..+.. +...+..++++|++ .++++....
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-------~lyvad~~~ 312 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-------TVYIGDAHT 312 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-------EEEEEESSS
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-------CEEEEECCC
Confidence 3334589999976 443332 23468899999999 788877665
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.50 E-value=5.3e-13 Score=143.52 Aligned_cols=234 Identities=10% Similarity=0.034 Sum_probs=154.4
Q ss_pred EEEEEeCCCCCEEEEEEC-CC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 457 RQFEYHPSISCLMVFGTL-DG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~-DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
...+|+| |+++|+.++. +| .|.+||+.+++...... ++...+.++.|+ ++++.|+.++.++.|.+||+.+++.
T Consensus 39 ~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 39 YQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp TSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcc
Confidence 3467999 9999998887 67 48889999888766554 555555567898 7899999999999999999988654
Q ss_pred cccc-cc-------------------------------------------cC-ccee-----------EeccCCCeEEEE
Q 004969 534 SIRG-MH-------------------------------------------YG-AGTV-----------TFDEFDQLTSVH 557 (721)
Q Consensus 534 ~~~~-~~-------------------------------------------~~-~~~~-----------~~~~~~~V~sv~ 557 (721)
.... .. .. .... ...+...+..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 194 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPI 194 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccE
Confidence 2100 00 00 0011 112334578899
Q ss_pred Eec-CCCEEEEEeCC------CcEEEEECCCCcEEEEEccccC--CCeEEEEEcCCCCcEEEEEECCC----cEEEEECC
Q 004969 558 VNS-MDELFLASGYS------KNIALYDINSGRRLQVFADMHK--EHINVVKFSNHSPSIFATSSFDQ----DVKLWDLR 624 (721)
Q Consensus 558 ~sp-~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h~--~~V~sI~fsPdg~~lLaSgs~Dg----tIrIWDlr 624 (721)
|+| ++..++.+..+ ..|.++|...++. ..+.. +. ..+..++|+|+|..+++++..++ .|++||+.
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT-HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC-CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee-CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 999 88888877753 3788888876554 33433 33 35788999999944434443322 39999999
Q ss_pred CCCceeEEEecCCCCeE----EEEEecCCCEEEEE---------eCCCcEEEEEcCCCccc---cccc-----------C
Q 004969 625 QKPIQPCYTASSSKGNV----MVCFSPDDHYLLGK---------GSGTSMFVQSLRGDPFR---DFNM-----------S 677 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~v----sl~fSpdg~~Lasg---------s~Dg~I~VWDl~g~~l~---~~~~-----------~ 677 (721)
+++...+....++.... ...|+|||++|+.. ..+..|++||+.+.... .+.. .
T Consensus 273 ~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 352 (388)
T 3pe7_A 273 TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVT 352 (388)
T ss_dssp TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTT
T ss_pred CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccC
Confidence 98765555544311111 13799999988854 44668999999865433 2222 3
Q ss_pred eEEEEECCCCCcccccccEEEEecCC
Q 004969 678 ILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 678 V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+..++|+|++ ..|+..+..
T Consensus 353 ~~~~~~spDg-------~~l~~~s~~ 371 (388)
T 3pe7_A 353 HPHPSFTPDD-------KQILFTSDV 371 (388)
T ss_dssp CCCCEECTTS-------SEEEEEECT
T ss_pred CCCccCCCCC-------CEEEEEecC
Confidence 6778999999 666666544
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.49 E-value=7.1e-12 Score=134.02 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=135.9
Q ss_pred CeEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCeEEE----EeecCC--------CCCCeEEEEEeeCCCCEEEEEe-CC
Q 004969 455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVS----YIPSFG--------AMNSVLGLCWLKKYPSKLIAGS-DN 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~tg~~i~----~l~~~~--------H~~~V~sl~fsp~d~~~LaSgs-~D 520 (721)
.+..+++ +++++++++ .++.|.+|++.....+. .....+ +...+.+++|+ ++++++++++ .+
T Consensus 101 ~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~ 176 (361)
T 3scy_A 101 DPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGT 176 (361)
T ss_dssp CEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTT
T ss_pred CcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCC
Confidence 3666777 556666665 68999999997543221 111111 22346889998 6787665544 58
Q ss_pred CeEEEEEcCCCCC----c-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE--EEEEcc--
Q 004969 521 GSLKLYDIRHMPP----S-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR--LQVFAD-- 590 (721)
Q Consensus 521 GtVrIWDi~~~~~----~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~--v~~l~~-- 590 (721)
+.|.+|++..... . +... +...............++|+|++..+++++ .++.|.+||+.+++. +..+..
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~ 255 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTK-GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT 255 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred CEEEEEEEcCCCCcccccceeec-ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence 9999999886432 0 1000 000122233344578999999999888887 589999999997754 233321
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEE-C-CCcEEEEECC--CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 004969 591 MHKEHINVVKFSNHSPSIFATSS-F-DQDVKLWDLR--QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQS 665 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg~~lLaSgs-~-DgtIrIWDlr--s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWD 665 (721)
.+...+..++|+|+| ++++++. . ++.|.+|++. ++....+........+..++|+|+|++|++++ .++.|.+|+
T Consensus 256 ~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 256 VNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp SCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 134557899999999 5665554 4 5899999996 45444444444433344899999999998887 578999976
Q ss_pred cC
Q 004969 666 LR 667 (721)
Q Consensus 666 l~ 667 (721)
+.
T Consensus 335 ~d 336 (361)
T 3scy_A 335 RD 336 (361)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=161.05 Aligned_cols=223 Identities=10% Similarity=0.038 Sum_probs=147.3
Q ss_pred eEEEEEeCCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969 456 PRQFEYHPSISCLMVFGTL---------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~---------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW 526 (721)
+.+++||| ||++|++++. +++|++||+.+++.+...+ ....+..++|+ ++++.|+.++ ++.|++|
T Consensus 62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l~~~~~~~~~S-PDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWS-PVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCSSBCCEEEC-SSTTCEEEEE-TTEEEEE
T ss_pred eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee---cCcccccceEC-CCCCEEEEEE-CCeEEEE
Confidence 78999999 9999999876 7999999999887631111 12468889998 7888888875 7899999
Q ss_pred EcCCCCCcccccccCcceeEeccC---------CCeEEEEEecCCCEEEEEeCCC-------------------------
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYSK------------------------- 572 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~sp~~~~lls~g~Dg------------------------- 572 (721)
|+.+++.......++...+...+. ....+++|+|+|..|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 998876532111121111111111 1225899999999999987542
Q ss_pred ---------cEEEEECCCCcEE--EE------EccccCCCeEEEEEcCCCCcEEEEEECC----CcEEEEE----CCCCC
Q 004969 573 ---------NIALYDINSGRRL--QV------FADMHKEHINVVKFSNHSPSIFATSSFD----QDVKLWD----LRQKP 627 (721)
Q Consensus 573 ---------~IrlWDl~s~~~v--~~------l~~~h~~~V~sI~fsPdg~~lLaSgs~D----gtIrIWD----lrs~~ 627 (721)
.|++||+.+++.. .. +.+ |...+..++|+||+ .++++.... ..|.+|| ..+++
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS-SDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT-SCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCC-CcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999987752 11 223 77889999999997 777775432 2488899 77765
Q ss_pred ceeEEE--ecCCCCeE------EEEEecCCCEEEE--EeCCC--cEEEEEcCCCccc---ccccCeEEEEECCCC
Q 004969 628 IQPCYT--ASSSKGNV------MVCFSPDDHYLLG--KGSGT--SMFVQSLRGDPFR---DFNMSILAAYTRPSS 687 (721)
Q Consensus 628 ~~~~~~--~~~~~~~v------sl~fSpdg~~Las--gs~Dg--~I~VWDl~g~~l~---~~~~~V~~v~fsP~~ 687 (721)
...+.. ..++.+.+ .+.|+|||+.++. +..+| .|++||+.+...+ .....+..+.+. ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CS
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eC
Confidence 443321 02233322 5789999996554 44555 5677777654332 223356665555 54
No 165
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.44 E-value=4.8e-11 Score=125.84 Aligned_cols=220 Identities=10% Similarity=0.101 Sum_probs=153.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~ 530 (721)
.+.+++|+| ++++++++..++.|.+||..+++...... .+...+.+++|. +++++++++..+ +.|.+||..+
T Consensus 46 ~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 46 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 378899999 88888888899999999999887765543 345789999998 677877777666 6899999887
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
+..... ... ......+.+++++|++..+++... .+.|..||..+++...... +...+..++|+|+
T Consensus 122 ~~~~~~-~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~d 192 (333)
T 2dg1_A 122 DNLQDI-IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTD 192 (333)
T ss_dssp CSCEEE-ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTT
T ss_pred CEEEEE-Ecc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCC
Confidence 553200 000 012245789999998877766543 2556777766555443322 3456889999999
Q ss_pred CCcEEEEEECCCcEEEEECCC-CCceeE------EEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccc-
Q 004969 605 SPSIFATSSFDQDVKLWDLRQ-KPIQPC------YTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNM- 676 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs-~~~~~~------~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~- 676 (721)
+..++++.+.++.|.+||+.+ +..... ....++..+..++++++|+++++...++.|.+||..+..+..+..
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~ 272 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP 272 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence 843556666788999999964 222111 122222233479999999988888888999999987665443321
Q ss_pred --------CeEEEEECCCC
Q 004969 677 --------SILAAYTRPSS 687 (721)
Q Consensus 677 --------~V~~v~fsP~~ 687 (721)
.+..++|+|++
T Consensus 273 ~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp TGGGTCSCBCCEEEECTTS
T ss_pred CCccccccCcceEEECCCC
Confidence 47889999987
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.42 E-value=3.8e-12 Score=145.79 Aligned_cols=185 Identities=7% Similarity=-0.017 Sum_probs=138.1
Q ss_pred eEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969 456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH 530 (721)
Q Consensus 456 V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~ 530 (721)
+...+|+| ++ ..+++.+.++.+.+||+.+++....... + . .+++|+ ++++++++++.| +.|.+||+.+
T Consensus 112 ~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~--~-~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 112 MRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARL--P-G--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSS 184 (582)
T ss_dssp BEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEE--S-S--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTT
T ss_pred ceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecC--C-C--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence 34568888 54 3444444455566999998877655542 2 2 788998 689999988877 8899999988
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEccccCCCeEEEE--------
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIALYDINSGRRLQVFADMHKEHINVVK-------- 600 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~-------- 600 (721)
++.. ....+...+..++|+|+|..++++..++ .|++||+.+++.. .+.+ |...+..++
T Consensus 185 g~~~----------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 185 GGLR----------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-PSKDFSSYRPTAITWLG 252 (582)
T ss_dssp CCCE----------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-SCSHHHHHCCSEEEEEE
T ss_pred CCce----------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-CCcChhhhhhcccccee
Confidence 6542 1122345578999999999999777788 8999999998877 5554 777777777
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC---cEEEEEcCC
Q 004969 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT---SMFVQSLRG 668 (721)
Q Consensus 601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg---~I~VWDl~g 668 (721)
|+|+| .++++++.|+++++|++ ++... ...+.+ +++|+ +|+++++++.+. .+++|+..+
T Consensus 253 ~spdg-~~~~~~~~~g~~~l~~~--g~~~~-----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 253 YLPDG-RLAVVARREGRSAVFID--GERVE-----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ECTTS-CEEEEEEETTEEEEEET--TEEEC-----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EcCCC-cEEEEEEcCCcEEEEEE--CCeec-----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 89999999999999999 43322 122444 89999 999999888775 467777654
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=8.4e-12 Score=134.57 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=137.5
Q ss_pred eEEEEEeCCCCCE--EEEEE-------------CCCeEEEEECC-CCeEEEEeec--CCCCCCeEEEEEeeCCCCEEEEE
Q 004969 456 PRQFEYHPSISCL--MVFGT-------------LDGEIVVVNHE-NENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAG 517 (721)
Q Consensus 456 V~~lafsP~dg~~--LasGs-------------~DG~I~IWdl~-tg~~i~~l~~--~~H~~~V~sl~fsp~d~~~LaSg 517 (721)
+..++|+| ++++ ++++. .+|++.+|++. +|+....+.. ..+...+.+++|+ +++++++++
T Consensus 85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~ 162 (365)
T 1jof_A 85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSA 162 (365)
T ss_dssp GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEE
T ss_pred CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEE
Confidence 44578899 8884 44542 68999999997 4665544432 1245679999998 688888776
Q ss_pred e-CCCeEEEEEcC-CCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCcEE---EEE
Q 004969 518 S-DNGSLKLYDIR-HMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGY-SKNIALYDIN--SGRRL---QVF 588 (721)
Q Consensus 518 s-~DGtVrIWDi~-~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~--s~~~v---~~l 588 (721)
. .++.|++||+. +++.... ...... +...+..++|+|++..+++++. ++.|.+|++. +++.. ..+
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELV------GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEE------EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred cCCCCEEEEEEECCCCCEEEe------eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 5 46899999998 5442110 011111 2345789999999999988875 7899999865 56543 222
Q ss_pred cc------ccCC------CeEEEE-EcCCCCcEEEEEEC-CC-----cEEEEECC-CCCceeEEE-ecCC-CCeEEEEEe
Q 004969 589 AD------MHKE------HINVVK-FSNHSPSIFATSSF-DQ-----DVKLWDLR-QKPIQPCYT-ASSS-KGNVMVCFS 646 (721)
Q Consensus 589 ~~------~h~~------~V~sI~-fsPdg~~lLaSgs~-Dg-----tIrIWDlr-s~~~~~~~~-~~~~-~~~vsl~fS 646 (721)
.. +|.. .+..++ |+|+| ++++++.. +. +|++|++. +++...+.. ...+ .....++|+
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s 315 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence 21 0222 588999 99999 56655543 33 89999996 554433221 2222 223368999
Q ss_pred c---CCCEEEEEeCC-CcEEEEEcCCC
Q 004969 647 P---DDHYLLGKGSG-TSMFVQSLRGD 669 (721)
Q Consensus 647 p---dg~~Lasgs~D-g~I~VWDl~g~ 669 (721)
| ||++|++++.+ +.|.+|++...
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9 89999998864 89999999755
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.40 E-value=4.6e-11 Score=124.29 Aligned_cols=216 Identities=10% Similarity=0.035 Sum_probs=149.6
Q ss_pred CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+.+++|+| +++ +++++..++.|..|+..++ ...+. .+...+.++++. +++.++++...++.|.+||..+++.
T Consensus 29 ~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 29 WTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp SEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcE
Confidence 378899999 777 8888999999999999877 45555 456789999998 6788887777789999999977653
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEccccCCCe
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-----------------YSKNIALYDINSGRRLQVFADMHKEHI 596 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-----------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V 596 (721)
.... ..... .....+..++++|+|..+++.+ ..+.|..+|.. ++.. .+.. +....
T Consensus 103 ~~~~-~~~~~----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~-~~~~~ 174 (296)
T 3e5z_A 103 ESIA-DSFEG----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIR-DRVKP 174 (296)
T ss_dssp EEEE-CEETT----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEEC-CCSSE
T ss_pred EEEe-eccCC----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eeec-CCCCC
Confidence 2110 00000 0113467899999988777632 13456666655 5443 3333 66778
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECC-CCCc-eeEEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc
Q 004969 597 NVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPI-QPCYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRD 673 (721)
Q Consensus 597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~-~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~ 673 (721)
..++|+|++ +.+++.+.++.|++||+. ++.. .....+..+.. +..++++++|+++++. ++.|.+|+..|+.+..
T Consensus 175 ~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~ 251 (296)
T 3e5z_A 175 NGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGR 251 (296)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEE
T ss_pred ccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEE
Confidence 999999999 566778888999999997 4443 11122222222 2378999999977766 8899999998766544
Q ss_pred cc--cCeEEEEE-CCCC
Q 004969 674 FN--MSILAAYT-RPSS 687 (721)
Q Consensus 674 ~~--~~V~~v~f-sP~~ 687 (721)
+. ..+.+++| .|++
T Consensus 252 ~~~~~~~~~~~f~~~d~ 268 (296)
T 3e5z_A 252 VLTPQTTSNLCFGGPEG 268 (296)
T ss_dssp EECSSCCCEEEEESTTS
T ss_pred EECCCCceeEEEECCCC
Confidence 32 12788888 6887
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.40 E-value=9.7e-11 Score=120.90 Aligned_cols=198 Identities=10% Similarity=0.150 Sum_probs=141.3
Q ss_pred CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+..+++++.++.++++... ++.|++|| .+++.+..+.. .+...+.++++. ++++++++...++.|.+||.... .
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~-~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~-~ 153 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA-TILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGN-V 153 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT-TTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC-E
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC-ccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCCCC-E
Confidence 58899996437776666643 89999999 56777766643 345678999998 67788888888899999996542 1
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg 612 (721)
..... ...+...+.++++++++..+++...++.|++||.. ++.+..+.. ++...+..++++|+| +++++.
T Consensus 154 -~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~ 224 (286)
T 1q7f_A 154 -LHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG-EILIAD 224 (286)
T ss_dssp -EEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC-CEEEEE
T ss_pred -EEEeC------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC-CEEEEe
Confidence 11000 00122457899999988766666678999999974 666666653 123678999999999 788888
Q ss_pred ECCC-cEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 613 SFDQ-DVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 613 s~Dg-tIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
..++ .|++||... +....+...... .+..++++|+|+++++ +.++.|++|++.
T Consensus 225 ~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 225 NHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp CSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 8776 999999654 333333332222 3458999999987776 679999999986
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=7.9e-12 Score=134.11 Aligned_cols=217 Identities=10% Similarity=-0.032 Sum_probs=142.5
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEE-------------------EEEeeCCCCEEEEE--
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-------------------LCWLKKYPSKLIAG-- 517 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~s-------------------l~fsp~d~~~LaSg-- 517 (721)
+.|+| ++++|+.++.++.|++||+.+++...... .+...... +.|+ ++++.++.+
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~ 161 (396)
T 3c5m_A 86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEF 161 (396)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHH
T ss_pred ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeee
Confidence 67999 99999999999999999999887765554 22222222 2344 344444433
Q ss_pred ---eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCC------CcEEEEECCCCcEEEE
Q 004969 518 ---SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYDINSGRRLQV 587 (721)
Q Consensus 518 ---s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~D------g~IrlWDl~s~~~v~~ 587 (721)
..+..|.+||+.+++.. ....+...+..+.|+| ++..++.++.+ ..|.+||+..++.. .
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~----------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELE----------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K 230 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEE----------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred ccCCCcceEEEEECCCCcEE----------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence 45678999999875431 1123445678999999 67777766543 46899998765533 3
Q ss_pred Ecccc-CCCeEEEEEcCCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEec-CCCEEEEEe----
Q 004969 588 FADMH-KEHINVVKFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-DDHYLLGKG---- 656 (721)
Q Consensus 588 l~~~h-~~~V~sI~fsPdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs---- 656 (721)
+.... ...+..++|+|+| ..|+.++.+ +.|++||+.+++...+....+ . .+.|+| +|+++++++
T Consensus 231 l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---~-~~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP---C-SHLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS---E-EEEEECSSSSEEEEEECCC-
T ss_pred eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC---C-CCCccCCCCceEEEecCCcc
Confidence 33211 2357889999999 555544433 449999999886554443332 2 289999 999888765
Q ss_pred ------------CCCcEEEEEcCCCccc---cccc-----------CeEEEEECCCCCcccccccEEEEecC
Q 004969 657 ------------SGTSMFVQSLRGDPFR---DFNM-----------SILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 657 ------------~Dg~I~VWDl~g~~l~---~~~~-----------~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
.++.|++||+.+.... .+.. .+....|+|++ ..|+.++.
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~l~~~s~ 370 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND-------DGVLFTSD 370 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTS-------SEEEEEEC
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCC-------CeEEEEec
Confidence 3468999998754332 2222 14557899999 55665554
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.37 E-value=1.1e-11 Score=146.86 Aligned_cols=209 Identities=7% Similarity=0.019 Sum_probs=140.4
Q ss_pred EEEEEeCCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969 457 RQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~D---------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD 527 (721)
..++||| |+++|+.++.+ +.+.+||+.+++... +. .|...+...+|+ ++++.|+.++ |+.|.+|+
T Consensus 65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~--~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE--RIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS--CCCTTEEEEEEC-SSTTCEEEEE-TTEEEEES
T ss_pred cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc--cCCCcceeeEEC-CCCCEEEEEE-CCeEEEEE
Confidence 4589999 99999999876 667799999987643 33 667889999999 7888888874 68999999
Q ss_pred cCCCCCcccccccCcceeEeccC---------CCeEEEEEecCCCEEEEEeCCC--------------------------
Q 004969 528 IRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYSK-------------------------- 572 (721)
Q Consensus 528 i~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~sp~~~~lls~g~Dg-------------------------- 572 (721)
+.++........+....+...+. .....+.|+|+|..|+.++.|.
T Consensus 139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 98876532222222211111111 2234589999999998875321
Q ss_pred ----------cEEEEECCC---Cc--EEEEEcc-----ccCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCC-
Q 004969 573 ----------NIALYDINS---GR--RLQVFAD-----MHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKP- 627 (721)
Q Consensus 573 ----------~IrlWDl~s---~~--~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~- 627 (721)
+|++||+.+ ++ ....+.. .|...+..++|+|+| ++++.... +..|++||+.+++
T Consensus 219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 588899988 73 2233331 267789999999999 55554432 3479999999886
Q ss_pred ---ceeEEEe--cCCCCe------EEEEEecCCCEEE-EEeC-CC--cEEEEEcCCCccc
Q 004969 628 ---IQPCYTA--SSSKGN------VMVCFSPDDHYLL-GKGS-GT--SMFVQSLRGDPFR 672 (721)
Q Consensus 628 ---~~~~~~~--~~~~~~------vsl~fSpdg~~La-sgs~-Dg--~I~VWDl~g~~l~ 672 (721)
+..+..+ ..+... ...+|+|||+.++ ..+. +| .|++||+.+...+
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 2221111 223322 2578999999877 6653 33 6888998865433
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.35 E-value=3.1e-11 Score=128.46 Aligned_cols=210 Identities=6% Similarity=0.039 Sum_probs=145.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeec-------CCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPS-------FGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKL 525 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~-------~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrI 525 (721)
.+..++++| +++++++...++.|++|+..... .+..+.. .++.....+|++.|.++.++++.+ .++.|++
T Consensus 92 ~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 92 LPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 589999999 88999999999999999986442 4444421 244557899999844788888886 6999999
Q ss_pred EEcCCCCCcccccc--cCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEE
Q 004969 526 YDIRHMPPSIRGMH--YGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFAD-MHKEHINVVKF 601 (721)
Q Consensus 526 WDi~~~~~~~~~~~--~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~f 601 (721)
||... ... .... +........+......++++|+++.++++ ..++.|++||..+++.+..+.. .+...+..++|
T Consensus 171 ~~~~g-~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 171 FSPSG-KFV-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp ECTTS-CEE-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EcCCC-CEE-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 99543 221 1110 00000000011236899999985555554 4688999999999999888852 25678899999
Q ss_pred cCCCCcEEEEEE-------CCCcEEEEECCCCCceeEEEe-cCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 602 SNHSPSIFATSS-------FDQDVKLWDLRQKPIQPCYTA-SSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 602 sPdg~~lLaSgs-------~DgtIrIWDlrs~~~~~~~~~-~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
+| + ..+++.+ .+..|++||..+++....+.. ..+ ..+..++++|+|..+++...++.|++|++.+.
T Consensus 249 ~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 249 IP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred cC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99 4 4444443 345899999998865433211 122 33458999999988888888999999998753
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=7.7e-12 Score=134.19 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=138.3
Q ss_pred eEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
+..++|+| +|++|+.+... ..|.+||+.+++...... ++......+.|+ ++++.|+.++.++.|.+||+.+++
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFIS-TDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEEC-TTSSEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceEC-CCCCEEEEEEcCCcEEEEECCCCC
Confidence 55678999 89988877553 478899999887654332 222223337788 789999999999999999998865
Q ss_pred CcccccccCccee------EeccCCCeE-----EEEEecCCCEEEEE-----eCCCcEEEEECCCCcEEEEEccccCCCe
Q 004969 533 PSIRGMHYGAGTV------TFDEFDQLT-----SVHVNSMDELFLAS-----GYSKNIALYDINSGRRLQVFADMHKEHI 596 (721)
Q Consensus 533 ~~~~~~~~~~~~~------~~~~~~~V~-----sv~~sp~~~~lls~-----g~Dg~IrlWDl~s~~~v~~l~~~h~~~V 596 (721)
..... ....... .+....... .+.|+|++..++.+ ..+..|++||+.+++...... +...+
T Consensus 114 ~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~ 190 (396)
T 3c5m_A 114 EQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DTAWL 190 (396)
T ss_dssp EEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ESSCE
T ss_pred cEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CCccc
Confidence 32111 0010000 000000000 02456666665544 346689999999888765553 67789
Q ss_pred EEEEEcC-CCCcEEEEEECC------CcEEEEECCCCCceeEEEecCCC-C-eE-EEEEecCCCEEEEEeCC-----CcE
Q 004969 597 NVVKFSN-HSPSIFATSSFD------QDVKLWDLRQKPIQPCYTASSSK-G-NV-MVCFSPDDHYLLGKGSG-----TSM 661 (721)
Q Consensus 597 ~sI~fsP-dg~~lLaSgs~D------gtIrIWDlrs~~~~~~~~~~~~~-~-~v-sl~fSpdg~~Lasgs~D-----g~I 661 (721)
..+.|+| ++ ..++..+.+ ..|.+||+.++....+ ..+. . .+ .++|+|+|++|+.++.+ +.|
T Consensus 191 ~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 191 GHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKI---KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEES---SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred ccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEe---eccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 9999999 67 555555443 3688899876643222 2222 2 23 78999999988776543 349
Q ss_pred EEEEcCCCccccc-cc-CeEEEEECC-CC
Q 004969 662 FVQSLRGDPFRDF-NM-SILAAYTRP-SS 687 (721)
Q Consensus 662 ~VWDl~g~~l~~~-~~-~V~~v~fsP-~~ 687 (721)
++||+.+...... .. ... ..|+| ++
T Consensus 267 ~~~d~~~g~~~~l~~~~~~~-~~~s~~dg 294 (396)
T 3c5m_A 267 YKANPETLENEEVMVMPPCS-HLMSNFDG 294 (396)
T ss_dssp EEECTTTCCEEEEEECCSEE-EEEECSSS
T ss_pred EEEECCCCCeEEeeeCCCCC-CCccCCCC
Confidence 9999974332221 11 223 88999 98
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.31 E-value=5e-11 Score=138.24 Aligned_cols=230 Identities=8% Similarity=-0.005 Sum_probs=146.5
Q ss_pred CeEEEEEeCCCCCEEEEE--ECCCeEEEEECCCCeEEEEeecCCCCCCeE---------EEEEee-CCCCE-EEEEeC-C
Q 004969 455 RPRQFEYHPSISCLMVFG--TLDGEIVVVNHENENIVSYIPSFGAMNSVL---------GLCWLK-KYPSK-LIAGSD-N 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasG--s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~---------sl~fsp-~d~~~-LaSgs~-D 520 (721)
.+..++|++ +.-+++++ +.++...||....+.....+. .|...+. ...|+. ++++. |+.++. +
T Consensus 25 ~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 25 RPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp CCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred ccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 588999998 66666666 458899999965455455554 4555555 666762 67777 665543 5
Q ss_pred CeEEEEEcC--C-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCC------
Q 004969 521 GSLKLYDIR--H-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----------KNIALYDINS------ 581 (721)
Q Consensus 521 GtVrIWDi~--~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----------g~IrlWDl~s------ 581 (721)
..|.+|++. + +.. ..+.... ...+...+.+++|+|++..+++++.+ ..|++||+.+
T Consensus 102 ~~l~~~~~~~~g~~~~--~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVP--RPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp CCEEEECTTSTTCCCC--EECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CeEEEEcCCCCCCCCC--EeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 566666665 2 222 1111100 00022346889999999999998876 5899999987
Q ss_pred CcEEEEEc-cccCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECC-CCCceeEEE-ecCCCCe-EEEEEecCC
Q 004969 582 GRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLR-QKPIQPCYT-ASSSKGN-VMVCFSPDD 649 (721)
Q Consensus 582 ~~~v~~l~-~~h~~~V~sI~fsPdg~~lLaSgs~D--------gtIrIWDlr-s~~~~~~~~-~~~~~~~-vsl~fSpdg 649 (721)
++. ..+. . +...+..++|+||| +.|+.++.+ ..|++||+. ++....... ..++... ..++|+|||
T Consensus 177 ~~~-~~l~~~-~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 177 SAV-RELSDD-AHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp GGS-EESSCS-CSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred Cce-eEEEec-CCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 554 3444 3 55678889999999 677766644 379999998 452111122 2233333 489999999
Q ss_pred CEEEEEeCCC--cEEEEEcCCCccc---ccccC---------eEEEEECCCCCcccccccEEEEecC
Q 004969 650 HYLLGKGSGT--SMFVQSLRGDPFR---DFNMS---------ILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 650 ~~Lasgs~Dg--~I~VWDl~g~~l~---~~~~~---------V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
+++++++.++ .|++||+.+...+ .+... +..++|+|++ .++++++.
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-------~~~~~~~~ 313 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-------LIAVVHGK 313 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-------CEEEEEBS
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-------EEEEEEEc
Confidence 9888888788 5666776433221 11111 4567888888 66666543
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=3.2e-10 Score=115.48 Aligned_cols=225 Identities=9% Similarity=0.077 Sum_probs=153.8
Q ss_pred CeEEEEEeCCCCCEEE-EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~La-sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+.+++++| ++.+++ +.+.++.|.+|+..++... .+. ..+...+.++++. ++++++++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLP-FNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-ECC-CCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-eEe-eCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceE
Confidence 588999999 888777 5477899999997655432 222 1334567889997 5677666655 88999999876433
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
... .......+.++++++++..+++...++.|.+||..+......... ....+.+++++|+| +++++..
T Consensus 100 ~~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g-~l~v~~~ 168 (270)
T 1rwi_B 100 TVL---------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSG-NVYVTDT 168 (270)
T ss_dssp EEC---------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTC-CEEEEEG
T ss_pred eee---------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCC-CEEEEEC
Confidence 110 111224578999999888666666788999998766544332222 33467889999998 6777777
Q ss_pred CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc----ccCeEEEEECCCCCc
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF----NMSILAAYTRPSSKS 689 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~----~~~V~~v~fsP~~~~ 689 (721)
.++.|.+||....... .........+..++++++|..+++...++.|.+|+..+...... ...+..++++|++
T Consensus 169 ~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-- 245 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-- 245 (270)
T ss_dssp GGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC--
T ss_pred CCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC--
Confidence 7889999998876432 11112224455899999998888777788999999886543221 1368889999999
Q ss_pred ccccccEEEEecCC
Q 004969 690 EIVKVNLLASTDHC 703 (721)
Q Consensus 690 ~~v~v~lLASgs~~ 703 (721)
.++++....
T Consensus 246 -----~l~v~~~~~ 254 (270)
T 1rwi_B 246 -----TVYVADRGN 254 (270)
T ss_dssp -----CEEEEEGGG
T ss_pred -----CEEEEECCC
Confidence 777776554
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.30 E-value=5.4e-11 Score=137.98 Aligned_cols=208 Identities=8% Similarity=0.035 Sum_probs=138.5
Q ss_pred EEEEe--CCCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEeCC-------
Q 004969 458 QFEYH--PSISCL-MVFGTL-DGEIVVVNHE--N-ENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGSDN------- 520 (721)
Q Consensus 458 ~lafs--P~dg~~-LasGs~-DG~I~IWdl~--t-g~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs~D------- 520 (721)
.+.|+ | |++. |+.++. +..|.+|++. + +. ...+.... |...+.+++|+ ++++.|++++.|
T Consensus 81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTT
T ss_pred cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCC
Confidence 34555 8 7777 666554 5667777765 3 43 33444211 56778999999 789999988877
Q ss_pred ---CeEEEEEcCC------CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECC-CC
Q 004969 521 ---GSLKLYDIRH------MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDIN-SG 582 (721)
Q Consensus 521 ---GtVrIWDi~~------~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~-s~ 582 (721)
..|.+||+.+ +.. ..+. ..+...+..++|+|+|..++.++.+ ..|++||+. ++
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~--~~l~-------~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV--RELS-------DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS--EESS-------CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred CceeEEEEEECCCCccccCCce--eEEE-------ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 6899999987 332 1111 0123456778999999999988754 379999999 57
Q ss_pred --cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCC---------eEEEEEecCC
Q 004969 583 --RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKG---------NVMVCFSPDD 649 (721)
Q Consensus 583 --~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~---------~vsl~fSpdg 649 (721)
.....+...|...+..+.|+|+| +++++++.++ .|.+||+.+++...+. ..+.. ...++|+|++
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLC--RREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESS--CCSSBSSCCCCSTTCCSEEECTTS
T ss_pred cccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecc--cccccccCccccccCceEeEeCCC
Confidence 13333433267889999999999 5888888888 5666666566433222 12211 1258899999
Q ss_pred CEEEEEeCCCcEEEE--EcCCCcccc---cccCeEEE
Q 004969 650 HYLLGKGSGTSMFVQ--SLRGDPFRD---FNMSILAA 681 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VW--Dl~g~~l~~---~~~~V~~v 681 (721)
+++++++. +.+++| |+.+...+. +...+..+
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT 341 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE
Confidence 99999998 999998 555443332 23345544
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=9.7e-10 Score=117.04 Aligned_cols=222 Identities=7% Similarity=0.020 Sum_probs=152.7
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
+..+.+.. +.++++...++.|.+||..+++.+..+.. ......++++ +++..+++...++.|.+||..+++...
T Consensus 46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~---~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITG---FTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEEC---CSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCC---CCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 67777754 45666666789999999999999888852 3568899997 455444444489999999998854311
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. ...... .........+++ +++.++++. .++.|.+||+.+++.+..+.. ......+.++|+| ++++++.
T Consensus 120 ~-i~~g~~---~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG-~l~v~~~ 190 (328)
T 3dsm_A 120 Y-IECPDM---DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYN-KMWTITD 190 (328)
T ss_dssp E-EECTTC---CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTS-EEEEEBC
T ss_pred E-EEcCCc---cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCC-CEEEEEC
Confidence 1 100000 000013455666 456666665 388999999999998888763 3456789999998 6777665
Q ss_pred CC----------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc--cc----ccC
Q 004969 614 FD----------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR--DF----NMS 677 (721)
Q Consensus 614 ~D----------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~--~~----~~~ 677 (721)
.+ +.|.+||..+++............+..++|+|++++++++.. .|++||.....+. .+ ...
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 54 789999999886544444433345668999999999988764 8999998743321 11 246
Q ss_pred eEEEEECCCCCcccccccEEEEe
Q 004969 678 ILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 678 V~~v~fsP~~~~~~v~v~lLASg 700 (721)
...++++|++. .+.++.
T Consensus 269 p~gi~vdp~~g------~lyva~ 285 (328)
T 3dsm_A 269 YYGLTVNPNNG------EVYVAD 285 (328)
T ss_dssp EEEEEECTTTC------CEEEEE
T ss_pred eEEEEEcCCCC------eEEEEc
Confidence 88899999442 566665
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.29 E-value=6.9e-10 Score=120.05 Aligned_cols=224 Identities=9% Similarity=-0.005 Sum_probs=143.4
Q ss_pred eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCC----CCCCeEEEEEeeCCCCEEEEEeC--
Q 004969 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFG----AMNSVLGLCWLKKYPSKLIAGSD-- 519 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~----H~~~V~sl~fsp~d~~~LaSgs~-- 519 (721)
+ .++|+| ++++++++. .+++|.+||..+++.+..+.... +......++++ +++++|+++..
T Consensus 53 p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~ 129 (361)
T 2oiz_A 53 G-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASP 129 (361)
T ss_dssp E-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESS
T ss_pred C-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCC
Confidence 5 899999 999988886 36789999999999888876421 22456678898 78898888864
Q ss_pred CCeEEEEEcCCCCCcccc-cccCcc------------eeEeccCCCeEEEEE---------------------------e
Q 004969 520 NGSLKLYDIRHMPPSIRG-MHYGAG------------TVTFDEFDQLTSVHV---------------------------N 559 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~~-~~~~~~------------~~~~~~~~~V~sv~~---------------------------s 559 (721)
+++|.+||+.+++.. .. +..... .+.....+.+..+.+ .
T Consensus 130 ~~~v~v~d~~~~~~~-~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 208 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYV-EDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA 208 (361)
T ss_dssp SEEEEEEETTTTEEE-EEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred CCeEEEEECCCCcEE-EEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence 689999999986542 11 111000 011111111111111 2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcE--EEEEcc-----cc----CCCeEEEEEcCCCCcEEEEEEC----------CCcE
Q 004969 560 SMDELFLASGYSKNIALYDINSGRR--LQVFAD-----MH----KEHINVVKFSNHSPSIFATSSF----------DQDV 618 (721)
Q Consensus 560 p~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~-----~h----~~~V~sI~fsPdg~~lLaSgs~----------DgtI 618 (721)
+++..++..+.++.+.++|+..+.. +..+.- .+ ......++|+|++..++++.+. .++|
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v 288 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI 288 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence 3344455555667788888765432 122110 00 0111237899998555555441 3479
Q ss_pred EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC---Ccccc---cccCeEEEEECCCC
Q 004969 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG---DPFRD---FNMSILAAYTRPSS 687 (721)
Q Consensus 619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g---~~l~~---~~~~V~~v~fsP~~ 687 (721)
.+||+.+++. +..+..+. +..++|+|||++|++++. +.|.+||... +.+.. .......+.++|++
T Consensus 289 ~viD~~t~~~--v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 289 WVMDTKTKQR--VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEETTTTEE--EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEEECCCCcE--EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 9999999854 44555555 669999999999998886 9999999884 33333 34567889999987
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.28 E-value=3.9e-10 Score=132.69 Aligned_cols=219 Identities=9% Similarity=0.035 Sum_probs=149.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS------- 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt------- 522 (721)
.+..++||| ||++||.+..++ +|++||+.+|+...... .+ ..+.+++|+ ++++.|+.++.++.
T Consensus 126 ~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~-~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER-VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE-ECSCCEEEC-TTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cC-cccceEEEE-eCCCEEEEEEECCcccccccc
Confidence 478899999 999998776644 89999999998766432 11 236679998 78899988888766
Q ss_pred ---------EEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCC----
Q 004969 523 ---------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGY-----SKNIALYDINS---- 581 (721)
Q Consensus 523 ---------VrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s---- 581 (721)
|++|++.+++... ...+. +...+.++.|+|++..++.++. +..|++||+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~--------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSED--------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccCCCCEEEEEECCCCcccc--------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 9999998754210 11111 2234678999999999888764 56899999986
Q ss_pred --Cc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCC-C-CeE-EEEEecCCCEE
Q 004969 582 --GR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSS-K-GNV-MVCFSPDDHYL 652 (721)
Q Consensus 582 --~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~-~-~~v-sl~fSpdg~~L 652 (721)
+. ....+.. +...+.. .|+|+|..+++.+..+ +.|.+||+.++.......+..+ . ..+ .++|++++.++
T Consensus 273 ~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 273 ITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp SCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred cCCccceEEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 53 3455554 5555555 4888884444444433 3699999987642111222223 2 244 68899888888
Q ss_pred EEEeCCCc--EEEEEc-CCCcccc---cccCeEEEEECCCCC
Q 004969 653 LGKGSGTS--MFVQSL-RGDPFRD---FNMSILAAYTRPSSK 688 (721)
Q Consensus 653 asgs~Dg~--I~VWDl-~g~~l~~---~~~~V~~v~fsP~~~ 688 (721)
++...++. |++|++ .|...+. ....+..+.++|++.
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 88888884 567787 4543332 245677888999873
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.25 E-value=7.5e-10 Score=115.48 Aligned_cols=209 Identities=12% Similarity=0.059 Sum_probs=156.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG 543 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~ 543 (721)
.+++|++++.++.|++||.++|+.+..+.. +. ..+.++.+. +++++++ +.++.|..||. +++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~--------- 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--EKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGREL--------- 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC--CTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEE---------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--CccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEE---------
Confidence 358899999999999999999999998874 33 467888887 6888888 45778999998 55432
Q ss_pred eeEecc--CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEcc-----ccCCCeEEEEEcCCCCcEEEEEECC
Q 004969 544 TVTFDE--FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD-----MHKEHINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 544 ~~~~~~--~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~D 615 (721)
..+.. ...+.++.+.+++..+++.+. ++.+..+|. +|+.++.+.. .+......+++.++| +++++...+
T Consensus 69 -W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~ 145 (276)
T 3no2_A 69 -WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFAT 145 (276)
T ss_dssp -EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTT
T ss_pred -EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCC
Confidence 12221 235778889899999998887 778888886 6888877652 122245567789998 799999999
Q ss_pred CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc---------cCeEEEEECC
Q 004969 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN---------MSILAAYTRP 685 (721)
Q Consensus 616 gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~---------~~V~~v~fsP 685 (721)
+.|..||.. ++. +.++.....+.++...++|+++++++.++.|..+|.. |+.+..+. ..+..+...|
T Consensus 146 ~~v~~~d~~-G~~--~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 146 SEVREIAPN-GQL--LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TEEEEECTT-SCE--EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CEEEEECCC-CCE--EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 999999998 755 3444433344467888999999998888899999988 77644432 1267788888
Q ss_pred CCCcccccccEEEEec
Q 004969 686 SSKSEIVKVNLLASTD 701 (721)
Q Consensus 686 ~~~~~~v~v~lLASgs 701 (721)
++ +++++..
T Consensus 223 ~G-------~i~v~~~ 231 (276)
T 3no2_A 223 NG-------GLYICNW 231 (276)
T ss_dssp TS-------CEEEEEE
T ss_pred CC-------CEEEEec
Confidence 88 7777774
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.21 E-value=1.8e-09 Score=114.02 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=131.6
Q ss_pred CeEEEEEeCCCCCEEEEEECC---C--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---------
Q 004969 455 RPRQFEYHPSISCLMVFGTLD---G--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------- 520 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D---G--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------- 520 (721)
.+..++|+| +|++|+.++.+ + .|.+|++.+++...... . .. +..++|+ ++++.|+.++.+
T Consensus 60 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~-~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 60 NATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE--A-KN-IRSLEWN-EDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp SCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--E-SE-EEEEEEC-TTSSEEEEEEECCCC------
T ss_pred cCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc--C-CC-ccceeEC-CCCCEEEEEEccCCCcCCcEE
Confidence 377899999 99988887754 3 48888998887665544 2 23 9999998 688888877642
Q ss_pred ------------------CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------C-cEE
Q 004969 521 ------------------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------K-NIA 575 (721)
Q Consensus 521 ------------------GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g-~Ir 575 (721)
..|.+||+.+++.. . .... . .+..+.|+|++ .++++..+ . ...
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~-------~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~ 201 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI-E-------EFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWD 201 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEE-E-------EEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEE-e-------eecC--C-CcccccCCCCe-EEEEEeccccccccccccc
Confidence 57889999875420 1 1111 2 57889999998 66666543 2 334
Q ss_pred EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeE-E-EEE
Q 004969 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNV-M-VCF 645 (721)
Q Consensus 576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~v-s-l~f 645 (721)
+|.+.+++. ..+.. + ..+..+ +|+| ..++.++.+ ..|.+|| +++. ......+...+ . +.|
T Consensus 202 l~~~d~~~~-~~l~~-~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~~~~~~~~~~~~~~ 271 (347)
T 2gop_A 202 IYIWEDGKE-EKMFE-K-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGILDEVDRGVGQAKIK 271 (347)
T ss_dssp EEEEETTEE-EEEEE-E-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESSTTCCSEEEEEEEE
T ss_pred EEEeCCCce-EEecc-C-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCce--EeccccCCcccCCccEE
Confidence 444445543 44443 4 455544 9999 566655543 3688888 4432 22233444555 4 899
Q ss_pred ecCCCEEEEEeCCCcEEEEEcC-CCc--ccccccCeEEEEECC
Q 004969 646 SPDDHYLLGKGSGTSMFVQSLR-GDP--FRDFNMSILAAYTRP 685 (721)
Q Consensus 646 Spdg~~Lasgs~Dg~I~VWDl~-g~~--l~~~~~~V~~v~fsP 685 (721)
+ +| ++++++.++.+++| +. +.. +......|..++|+|
T Consensus 272 s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 272 D-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp T-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred c-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 9 88 88889999999999 76 332 222355788899998
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.21 E-value=1.5e-08 Score=103.83 Aligned_cols=214 Identities=10% Similarity=0.063 Sum_probs=152.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.+++++| ++.++++...++.|.+||.. +.... +....+...+.++++. +++.++++...++.|..||... ..
T Consensus 16 ~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g-~~- 89 (299)
T 2z2n_A 16 GPYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKKG-II- 89 (299)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTS-CE-
T ss_pred CccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCCC-cE-
Confidence 589999999 88888776668999999988 65433 3322345779999997 6778777777788999999763 21
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. ..... ....+.++++.+++..+++...++.|..||. +++........+...+..+++.++| +++++..
T Consensus 90 -~-------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~ 159 (299)
T 2z2n_A 90 -K-------EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTEN 159 (299)
T ss_dssp -E-------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred -E-------EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence 1 11111 2345788999888877776667889999998 5654433222245678999999998 7777777
Q ss_pred CCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSS 687 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~ 687 (721)
.++.|..||. +++... ..... ...+..++++++|...++...++.|.+|+..+. +..+ ...+..++++|++
T Consensus 160 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGE-ITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECSTT
T ss_pred CCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCc-EEEEECCCCCCCceeEEECCCC
Confidence 7889999999 654332 22332 233458999999998777767889999998543 2222 2468889999998
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.19 E-value=1.9e-09 Score=114.74 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=137.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEe--CCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs--~DGtVrIWDi~ 529 (721)
.+..++++| ++.++++...++.|.+||..+++....+.... .......+++ .+ ..++.+. .++.|.+||..
T Consensus 85 ~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~-~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 85 SPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG-KYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp SEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET-TEEEEEECTTCCEEEEEETT
T ss_pred CCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC-CEEEEEcCCCCCEEEEEECC
Confidence 488999999 67555555489999999999999887776422 1114556776 23 4444444 48999999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----------KNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----------g~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
+++... .+........+.+++++..++++..+ +.|.+||..+++....+..........+
T Consensus 161 t~~~~~----------~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 161 TDKVVD----------ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp TTEEEE----------EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CCeEEE----------EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 864311 11112234677888887765555444 7899999999988877653123478999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEec-CCCEEEEE----eCCCcEEEEEcCCCcccc
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSP-DDHYLLGK----GSGTSMFVQSLRGDPFRD 673 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSp-dg~~Lasg----s~Dg~I~VWDl~g~~l~~ 673 (721)
+|+|++ ..+.++.. .|.+||..+++......... ...+..++++| ++..+++. ..++.|.+||..|+.+..
T Consensus 231 a~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~ 307 (328)
T 3dsm_A 231 QLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE 307 (328)
T ss_dssp EECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEE
T ss_pred EEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEE
Confidence 999998 56655544 89999998875422111121 23455899999 55555655 568899999999776554
Q ss_pred c
Q 004969 674 F 674 (721)
Q Consensus 674 ~ 674 (721)
+
T Consensus 308 i 308 (328)
T 3dsm_A 308 F 308 (328)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.19 E-value=8.6e-10 Score=116.20 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=147.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++.|+| ++..++..+.++.++.| .+.....+. ++...+.+++|. +++++++++..++.|.+||..+++..
T Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 7 DLPTLFYSG-KSNSAVPIISESELQTI---TAEPWLEIS--KKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCBCCSCG-GGGCSSCCCCGGGSCEE---ECEEEEEEE--SSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred ccceeeecC-CccceeEEeecccCccc---ccceeEEEe--ccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 366778888 66666666788999999 355555555 556678999998 67888888889999999999875431
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----g~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL 609 (721)
.....+...+.++++++++..++++..+ +.|.+||..+++....+.. .+...+..++++|+| +++
T Consensus 80 ---------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~ 149 (333)
T 2dg1_A 80 ---------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFY 149 (333)
T ss_dssp ---------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEE
T ss_pred ---------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEE
Confidence 1111234568999999998877766655 6899999988776544431 245678999999998 677
Q ss_pred EEEEC------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC--CCcccc-------
Q 004969 610 ATSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR--GDPFRD------- 673 (721)
Q Consensus 610 aSgs~------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~--g~~l~~------- 673 (721)
++... .+.|..||..+++..... ........++|+|+|++++.+ +.++.|++|++. +..+..
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 76653 355666666655433222 112234579999999866544 557899999995 333211
Q ss_pred -cc--cCeEEEEECCCC
Q 004969 674 -FN--MSILAAYTRPSS 687 (721)
Q Consensus 674 -~~--~~V~~v~fsP~~ 687 (721)
+. ..+..++++|++
T Consensus 228 ~~~~~~~~~~i~~d~~G 244 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDD 244 (333)
T ss_dssp ECCSSSEEEEEEEBTTC
T ss_pred ecCCCCCCCceEECCCC
Confidence 11 256778899988
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.18 E-value=1.4e-09 Score=110.62 Aligned_cols=197 Identities=9% Similarity=0.109 Sum_probs=140.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.+++++| ++.++++.. ++.|.+||..++... .+.. .....+.++++. +++.++++...++.|.+|+..+....
T Consensus 68 ~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 68 QPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-VLPF-DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp SCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-ECCC-CSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-eeec-CCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeE
Confidence 478899999 788666665 889999998765433 3321 233578999997 57787777778899999976553321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.. .......+.++++++++..+++...++.|.+||...+........ +...+.+++++++| +++++...
T Consensus 143 ~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g-~l~v~~~~ 211 (270)
T 1rwi_B 143 VL---------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAG-TVYVTEHN 211 (270)
T ss_dssp EC---------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTC-CEEEEETT
T ss_pred ee---------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCC-CEEEEECC
Confidence 10 111223467899988888666666678999999987665443322 44678999999998 78888888
Q ss_pred CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++.|.+||....... .....+...+..++++++|+.+++...++.|+++++..
T Consensus 212 ~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 212 TNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp TSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 899999999765322 11112223455899999999888888899999999874
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=5e-10 Score=122.59 Aligned_cols=171 Identities=9% Similarity=0.091 Sum_probs=125.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV 523 (721)
++..+++++ ...++++|+.++ +++|+++..+ ..... .+.+ |+.|+| ++++|+++ .+|.|
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f---d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF---HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE---ETTEEEEE-ESSEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE---CCCEEEEE-cCCcE
Confidence 478899999 889999999986 6679865332 11122 3455 999999 67888888 88999
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
++||+.+.... .....+..++.++.+.+. .++++..||.+.+||+.++.... +...|++++|+|
T Consensus 109 ~v~dv~sl~~~---------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp 172 (388)
T 1xip_A 109 YSLDLEELSEF---------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN 172 (388)
T ss_dssp EEEESSSTTCE---------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECS
T ss_pred EEEEchhhhcc---------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcC
Confidence 99999885421 112233445777766543 48889999999999999887653 345799999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEe------c---CCCCeE-EEEEecCCCEEEE
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTA------S---SSKGNV-MVCFSPDDHYLLG 654 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~------~---~~~~~v-sl~fSpdg~~Las 654 (721)
+| ++.|..||++++|+...........+ . +|...+ ++.|.+++.++++
T Consensus 173 kG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 173 SQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred Cc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 98 67799999999999887653212223 1 234445 9999999999986
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.17 E-value=9.4e-09 Score=106.76 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=147.2
Q ss_pred CeEEEEEeCCCCCEEEE-------EECCCeEEEEECCCCeEEEEeec--CCCCCCeEEEEEeeCC-CCEEEEEeCCCeEE
Q 004969 455 RPRQFEYHPSISCLMVF-------GTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKY-PSKLIAGSDNGSLK 524 (721)
Q Consensus 455 ~V~~lafsP~dg~~Las-------Gs~DG~I~IWdl~tg~~i~~l~~--~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVr 524 (721)
.+.+++|++ ++.++++ +..++.|.+||..+++....... .++...+.++++. ++ +.++++. ..+.|.
T Consensus 19 ~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~l~v~~-~~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVAD-MRLGLL 95 (314)
T ss_dssp TCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEE-TTTEEE
T ss_pred CccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-cCCCcEEEEE-CCCCEE
Confidence 478899998 8888888 67789999999888876433210 1245678999997 55 5545444 444788
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCcEEEEEc
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------KNIALYDINSGRRLQVFA 589 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D---------------g~IrlWDl~s~~~v~~l~ 589 (721)
+||.. ++........... .....+.++++++++..+++...+ +.|..||.. ++......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEeCC-CCEEEEEeccCCC----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 99987 4431110000000 011347899999988777766554 567778776 55443332
Q ss_pred cccCCCeEEEEEc----CCCCcEEEEEECCCcEEEEECC-CCCce---eEEEecCC--CCeEEEEEecCCCEEEEEeCCC
Q 004969 590 DMHKEHINVVKFS----NHSPSIFATSSFDQDVKLWDLR-QKPIQ---PCYTASSS--KGNVMVCFSPDDHYLLGKGSGT 659 (721)
Q Consensus 590 ~~h~~~V~sI~fs----Pdg~~lLaSgs~DgtIrIWDlr-s~~~~---~~~~~~~~--~~~vsl~fSpdg~~Lasgs~Dg 659 (721)
+......++|+ |++..++++...++.|.+||.. ++... ....+..+ ..+..++++++|+++++...++
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 44567889999 9983345555678999999986 33221 12233333 2344899999999999888889
Q ss_pred cEEEEEcC-CCccccc---ccCeEEEEECCCC
Q 004969 660 SMFVQSLR-GDPFRDF---NMSILAAYTRPSS 687 (721)
Q Consensus 660 ~I~VWDl~-g~~l~~~---~~~V~~v~fsP~~ 687 (721)
.|.+||.. +..+... ...+.+++++|++
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence 99999988 5543332 3568899999998
No 188
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.15 E-value=2.3e-09 Score=114.89 Aligned_cols=193 Identities=14% Similarity=0.118 Sum_probs=132.0
Q ss_pred EEECCCCeEEEEeecCCCCCCeEE-----EEEeeCCCCEEEEEeC-CC--eEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969 480 VVNHENENIVSYIPSFGAMNSVLG-----LCWLKKYPSKLIAGSD-NG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (721)
Q Consensus 480 IWdl~tg~~i~~l~~~~H~~~V~s-----l~fsp~d~~~LaSgs~-DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~ 551 (721)
.++..+|..+..+. .|...... .+|+ +++++|+.++. +| .|.+||+.+++... + ...+..
T Consensus 14 ~~~~~~g~~~~~lt--~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--l-------t~~~~~ 81 (388)
T 3pe7_A 14 YQDASTGAQVTRLT--PPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--L-------TEGRGD 81 (388)
T ss_dssp EECTTTCCEEEECS--CTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEE--C-------CCSSCB
T ss_pred EecCCCCcceEEec--CCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEE--e-------eeCCCC
Confidence 45667777777766 55555555 7898 78898888887 77 47888887754311 1 111112
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE--EcCCCCcEEEEE-----------------
Q 004969 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK--FSNHSPSIFATS----------------- 612 (721)
Q Consensus 552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~--fsPdg~~lLaSg----------------- 612 (721)
.+..+.|+|++..++.++.++.|++||+.+++....+.. +...+.... ++|++ ..++..
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCC-CeeccccccCcccccccccchhh
Confidence 234568999999999999999999999999987766664 555554444 48988 566532
Q ss_pred -----ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec-CCCEEEEEeCC------CcEEEEEcCCCccccc---c--
Q 004969 613 -----SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-DDHYLLGKGSG------TSMFVQSLRGDPFRDF---N-- 675 (721)
Q Consensus 613 -----s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs~D------g~I~VWDl~g~~l~~~---~-- 675 (721)
..+..|.+||+.+++...+... ......+.|+| ||+.|+....+ ..|+++|..+...+.. .
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVILQE--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCceEEeecC--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 2346799999999865444322 22234799999 99999877653 3788888875443322 2
Q ss_pred cCeEEEEECCCCC
Q 004969 676 MSILAAYTRPSSK 688 (721)
Q Consensus 676 ~~V~~v~fsP~~~ 688 (721)
..+....|+|+++
T Consensus 238 ~~~~~~~~spdg~ 250 (388)
T 3pe7_A 238 ESCTHEFWVPDGS 250 (388)
T ss_dssp EEEEEEEECTTSS
T ss_pred cccccceECCCCC
Confidence 2477789999994
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.13 E-value=5e-08 Score=99.99 Aligned_cols=221 Identities=5% Similarity=-0.059 Sum_probs=153.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.++++++ ++.++++...++.|..|+.. ++. ..+........+.++++. +++.++++...++.|.+||. ++...
T Consensus 58 ~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 58 KVMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEE
Confidence 488999999 88888887778999999986 443 333322345678999997 57777777777889999998 43321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
... .......+..+++.+++..+++...++.|..||. +++........+...+..++++++| .++++...
T Consensus 133 ~~~--------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~ 202 (299)
T 2z2n_A 133 EYE--------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEII 202 (299)
T ss_dssp EEE--------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETT
T ss_pred Eec--------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccC
Confidence 000 0012245789999888876666656789999999 6665543222245678899999998 67777767
Q ss_pred CCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCCC
Q 004969 615 DQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSSK 688 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~~ 688 (721)
++.|.+||. ++... .+.... ...+..++++++|+.+++...++.|..||..+. +..+ ...+.++.+ +++
T Consensus 203 ~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~-~~g- 277 (299)
T 2z2n_A 203 GNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI-IEEYPIQIKSAEPHGICF-DGE- 277 (299)
T ss_dssp TTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE-EEEEECSSSSCCEEEEEE-CSS-
T ss_pred CceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc-eEEEeCCCCCCccceEEe-cCC-
Confidence 889999999 65433 233332 234458999999997777667889999998643 2222 246788888 888
Q ss_pred cccccccEEEEec
Q 004969 689 SEIVKVNLLASTD 701 (721)
Q Consensus 689 ~~~v~v~lLASgs 701 (721)
.+.++.+
T Consensus 278 ------~l~v~~~ 284 (299)
T 2z2n_A 278 ------TIWFAME 284 (299)
T ss_dssp ------CEEEEET
T ss_pred ------CEEEEec
Confidence 6666643
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=9.2e-09 Score=106.77 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=133.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-C-CCCCeEEEEEeeCCCCEEEEEeC-------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-G-AMNSVLGLCWLKKYPSKLIAGSD------------- 519 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~-H~~~V~sl~fsp~d~~~LaSgs~------------- 519 (721)
.+.+++++| ++.++++...++.|.+||..+|+........ + ....+.++++. ++++++++.+.
T Consensus 70 ~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 70 HQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp SEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCcccccccccccccc
Confidence 488999999 8898888777889999999888765443211 1 12356788997 68888887321
Q ss_pred ----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcE---EEEEccc
Q 004969 520 ----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRR---LQVFADM 591 (721)
Q Consensus 520 ----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~---v~~l~~~ 591 (721)
.+.|..++.. +.. .....+......++|+|++..+++.+.++.|.+||+. +++. ...+ ..
T Consensus 148 ~~~~~~~l~~~~~~-g~~----------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~ 215 (296)
T 3e5z_A 148 MELPGRWVFRLAPD-GTL----------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV 215 (296)
T ss_dssp CCSSSCEEEEECTT-SCE----------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC
T ss_pred ccCCCcEEEEECCC-CCE----------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC
Confidence 2344444443 211 1112233456889999999988655668899999997 5554 3444 33
Q ss_pred cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEEcCCCc
Q 004969 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCF-SPDDHYLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~f-Spdg~~Lasgs~Dg~I~VWDl~g~~ 670 (721)
+...+.+++++++| +++++. ++.|.+||.. ++....+ ..+..+.+++| +|+++.|++++.+ .+.-++...+.
T Consensus 216 ~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~~~~--~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 216 EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDELGRV--LTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEEEEE--ECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred CCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEEEEE--ECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 56677889999999 666655 7889999987 4333333 33333458889 5899999988865 55556666555
Q ss_pred cccc
Q 004969 671 FRDF 674 (721)
Q Consensus 671 l~~~ 674 (721)
++.|
T Consensus 289 ~~~~ 292 (296)
T 3e5z_A 289 LEHH 292 (296)
T ss_dssp CCC-
T ss_pred cccc
Confidence 5544
No 191
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=2.6e-08 Score=109.72 Aligned_cols=228 Identities=7% Similarity=0.030 Sum_probs=154.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~ 532 (721)
.+..++|+| ++.++++...++.|++||..++........ . .... ++|. ++++.|+++..++ .|.+|+...+.
T Consensus 132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~-~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG--F-KGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET--C-CBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc--C-CCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCc
Confidence 589999999 888888888889999999998877665542 2 2233 8887 6788888888766 78888887643
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE----EccccCCCe-E-EEEEcCCCC
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV----FADMHKEHI-N-VVKFSNHSP 606 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~----l~~~h~~~V-~-sI~fsPdg~ 606 (721)
.. ... ..........+.+++++|+++.++++..++.|+.||..++..... ..+ +...- . .++|+|+++
T Consensus 206 ~~-~~~----g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 206 AP-TRI----GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp CE-EEE----EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEETTTT
T ss_pred ee-EEe----eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeCCCC
Confidence 21 000 000000224467899999777777777788999999987764322 121 22222 3 999999654
Q ss_pred cEEEEEECCCcEEEEECCCCCceeEEEecC--------------CCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCcc
Q 004969 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASS--------------SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDPF 671 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~--------------~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~l 671 (721)
.++++-..++.|+.||.... ........ -..+..++++|+|+++++-. .++.|+.|++....+
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 78888888899999998754 21221111 12355899999999777777 788999999542222
Q ss_pred ccc------------------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 672 RDF------------------NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 672 ~~~------------------~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+ -.....++++|++ .++++....
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-------~lyVad~~n 400 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-------GYWIAEAWG 400 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-------EEEEEESTT
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-------CEEEEECCC
Confidence 211 1257889999988 777766544
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=2e-09 Score=126.36 Aligned_cols=215 Identities=7% Similarity=-0.018 Sum_probs=143.0
Q ss_pred CeEEEEEeCCCCCEEE-----EEECCCeEEEEECCCCeEEEEeecCCCCCCe--EEEEEeeCCCCEEEEEeCCCe-----
Q 004969 455 RPRQFEYHPSISCLMV-----FGTLDGEIVVVNHENENIVSYIPSFGAMNSV--LGLCWLKKYPSKLIAGSDNGS----- 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~La-----sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V--~sl~fsp~d~~~LaSgs~DGt----- 522 (721)
.+.+++||| ||++|| .|+.+.+|++||+.+|+.+. . .+...+ .+++|+ ++++.|+.++.|..
T Consensus 122 ~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~--~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 122 SLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--V--DVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--S--CCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSCG
T ss_pred EEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC--C--cccCcccccceEEe-cCCCEEEEEEecCCCCCcc
Confidence 588999999 999998 44455789999999987641 1 122222 678998 78899999988776
Q ss_pred --------EEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcEEEE
Q 004969 523 --------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRRLQV 587 (721)
Q Consensus 523 --------VrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~v~~ 587 (721)
|++|++.++.... ...+. +...+.++.|+|+|..++.++.++ .|++||..+++.. .
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~ 266 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKD--------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-L 266 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGC--------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-E
T ss_pred ccCCCCCEEEEEECCCCchhc--------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-E
Confidence 9999998865310 11111 224578999999999998887655 6777876666543 3
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCCCCcee-EEEecCC-CCeE-EEEEecCCCEEEEEeCCCcE
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSS---FDQDVKLWDLRQKPIQP-CYTASSS-KGNV-MVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs---~DgtIrIWDlrs~~~~~-~~~~~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I 661 (721)
+.. +...+....+ ++|. +++++. .++.|.+||+.++.... ...+..+ ...+ .++|+ ++.++++...|+..
T Consensus 267 l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 267 LVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp EEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred eec-CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 433 5556666666 6774 555544 25889999998764311 1122222 3334 67888 77788888889887
Q ss_pred EEEEc--CCCccccc----ccCeEEEEECCCCC
Q 004969 662 FVQSL--RGDPFRDF----NMSILAAYTRPSSK 688 (721)
Q Consensus 662 ~VWDl--~g~~l~~~----~~~V~~v~fsP~~~ 688 (721)
++|.+ .|...+.. ...+..++++|+++
T Consensus 343 ~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD 375 (695)
T ss_dssp EEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred EEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence 77754 45433322 33466677788773
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.10 E-value=1.7e-08 Score=116.13 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=145.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC--CCCCcccccccCc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR--HMPPSIRGMHYGA 542 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~--~~~~~~~~~~~~~ 542 (721)
.+.++++...+++|.++|..+++.+..+.. ...+..+.|+ ++++++++++.|+.|.+||+. +.+. +
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~-v------- 233 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTT-V------- 233 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCE-E-------
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcE-e-------
Confidence 445677778899999999999999988863 2357789998 799999999999999999996 4322 1
Q ss_pred ceeEeccCCCeEEEEEe----cCCCEEEEEeC-CCcEEEEECCCCcEEEEEccc---------cCC-CeEEEEEcCCCCc
Q 004969 543 GTVTFDEFDQLTSVHVN----SMDELFLASGY-SKNIALYDINSGRRLQVFADM---------HKE-HINVVKFSNHSPS 607 (721)
Q Consensus 543 ~~~~~~~~~~V~sv~~s----p~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~---------h~~-~V~sI~fsPdg~~ 607 (721)
...........++++ |++.+++++.. +++|.++|..+.+.+..+... |.. .+..+..+++++.
T Consensus 234 --~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 234 --AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp --EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred --EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 122222235789999 69999988875 699999999999998876521 112 6788999999877
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD 669 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~ 669 (721)
++++...+|.|.++|........+..+......-.+.|+|+|++++++. .++.|.++|+...
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 7777777899999999876544444444333344789999999987765 5789999999843
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.06 E-value=1.7e-07 Score=95.94 Aligned_cols=215 Identities=7% Similarity=-0.004 Sum_probs=151.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.++++.+ ++.+.++...++.|.+||.. ++... +....+...+.++++. +++.++++...++.|..||.. ++..
T Consensus 21 ~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 21 GPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeE
Confidence 589999999 88888877778999999988 65543 3332444678999987 677777777778899999987 3321
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. .... ....+.++++.+++..+++...++.|..||.. ++............+..+++.++| +++++..
T Consensus 96 ~---------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~ 164 (300)
T 2qc5_A 96 E---------YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTEN 164 (300)
T ss_dssp E---------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred E---------ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEec
Confidence 0 1111 12457889998888777666667899999988 655432221145678999999998 6777776
Q ss_pred CCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc----ccccCeEEEEECCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR----DFNMSILAAYTRPSS 687 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~----~~~~~V~~v~fsP~~ 687 (721)
.++.|..||. ++.... +..... ..+..++++++|...++....+.|.+|+..+.... .....+..+++.|++
T Consensus 165 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 165 QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS 241 (300)
T ss_dssp TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCC
Confidence 6889999998 544332 333322 33448999999988887777788999998644221 113457889999998
No 195
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.05 E-value=6.4e-08 Score=101.08 Aligned_cols=218 Identities=8% Similarity=0.087 Sum_probs=142.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
.-+..|+|.++.++++...++.|..||..++... .+. ....+.++++. ++++++++ . ++.|.+||..+++...
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 5678899966777888888999999999887653 333 34679999998 67775554 4 5689999988754311
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC---------CcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D---------g~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
....... .....+..++++|++..+++.... ....+|.+.. ++...... +....+.++|+|++
T Consensus 88 ~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~pngi~~spdg 160 (297)
T 3g4e_A 88 LATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVDISNGLDWSLDH 160 (297)
T ss_dssp EEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EESBEEEEEECTTS
T ss_pred EEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccccccceEEcCCC
Confidence 1000000 011236889999988866654321 2334554442 44333222 44567899999999
Q ss_pred CcEEEEEECCCcEEEEEC--CCCCcee---EEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc---
Q 004969 606 PSIFATSSFDQDVKLWDL--RQKPIQP---CYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN--- 675 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDl--rs~~~~~---~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~--- 675 (721)
..++++.+.++.|.+||+ .++.... ...+....+ +-.++++++|++.++...++.|.+||.. |+.+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 545566777899999997 4443321 222222222 3379999999988888888899999997 66544432
Q ss_pred cCeEEEEEC-CCC
Q 004969 676 MSILAAYTR-PSS 687 (721)
Q Consensus 676 ~~V~~v~fs-P~~ 687 (721)
..+.+++|. |++
T Consensus 241 ~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 241 DKTTSCCFGGKNY 253 (297)
T ss_dssp SBEEEEEEESGGG
T ss_pred CCceEEEEeCCCC
Confidence 468899998 877
No 196
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.05 E-value=2.1e-08 Score=108.39 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=125.7
Q ss_pred CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.+..++++| ++++++++.. +++|.+||+.+++.+.. +... ....+.+.|.....+++.+.||.+.+|+....
T Consensus 109 ~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 109 YDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 477899999 9999988864 68999999999998887 6531 12234445444466777777777777776542
Q ss_pred CCcc-c-----cccc------------C--------cc-eeEecc------------------------CCCeEEEEEec
Q 004969 532 PPSI-R-----GMHY------------G--------AG-TVTFDE------------------------FDQLTSVHVNS 560 (721)
Q Consensus 532 ~~~~-~-----~~~~------------~--------~~-~~~~~~------------------------~~~V~sv~~sp 560 (721)
.... . .... . .. ...+.. ......++++|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 1111 0 0000 0 00 000000 00111267889
Q ss_pred CCCEEEEEeC-----------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce
Q 004969 561 MDELFLASGY-----------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ 629 (721)
Q Consensus 561 ~~~~lls~g~-----------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~ 629 (721)
+++.++++.. ++.|.+||+.+++.+..+.. +. +.+++|+|+| +++++++. ++|.+||..+++.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcce
Confidence 8888887643 34799999999999999985 44 9999999999 67777776 99999999998444
Q ss_pred eEEEe-cCCCCeEEEEEecCCC
Q 004969 630 PCYTA-SSSKGNVMVCFSPDDH 650 (721)
Q Consensus 630 ~~~~~-~~~~~~vsl~fSpdg~ 650 (721)
.+..+ .....+..++++|+|+
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEeccCCCCcEEEEecCCCC
Confidence 45554 3445666899999986
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.03 E-value=6.4e-09 Score=113.82 Aligned_cols=171 Identities=13% Similarity=0.043 Sum_probs=124.0
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc-ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~-~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD 578 (721)
++..++++ +...++++|+.+ .+.+|++........ ............... |+.++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68889998 678889999988 455699765321000 000011112334455 999999 78888887 889999999
Q ss_pred CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
+++......... |...+.++.+.+. .+++++.||.+.+||+.++..... .....+++|||+| ++.|..|
T Consensus 113 v~sl~~~~~~~~-~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~~-----~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTS-FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL-----AQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEE-CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE-----EESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccce-eecceeeEEecCC---CEEEEECCCCEEEEEccCCccccc-----cCCceEEEEcCCc--eEEEEcC
Confidence 987665555554 7778888877653 388899999999999998754321 1244599999999 6789999
Q ss_pred CcEEEEEcCCCcc------------c---ccccCeEEEEECCCC
Q 004969 659 TSMFVQSLRGDPF------------R---DFNMSILAAYTRPSS 687 (721)
Q Consensus 659 g~I~VWDl~g~~l------------~---~~~~~V~~v~fsP~~ 687 (721)
|.+++|+..+... . .+...|.++.|.+++
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 9999998876553 1 245789999999988
No 198
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.03 E-value=1.6e-07 Score=99.75 Aligned_cols=216 Identities=12% Similarity=0.061 Sum_probs=141.5
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
..+..|+|.++.+++++..++.|..||..+++.. .+. ....+.+++|. ++++++++. .+ .|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE---CCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 5678899955667777778899999999887653 333 23579999998 566666554 44 48999987765311
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL 609 (721)
+...... .....+.++++++++..+++... .+.|..+| +++... +.. +....+.++|+|++..++
T Consensus 124 --~~~~~~~---~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~-~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 124 --HAELESD---LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA-DISIPNSICFSPDGTTGY 194 (326)
T ss_dssp --EECSSTT---CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE-EESSEEEEEECTTSCEEE
T ss_pred --EeeCCCC---CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC-CCcccCCeEEcCCCCEEE
Confidence 1000000 01124788999999886665432 24566666 455433 322 345678999999994345
Q ss_pred EEEECCCcEEEEECC--CC-Cce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc---ccCeE
Q 004969 610 ATSSFDQDVKLWDLR--QK-PIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF---NMSIL 679 (721)
Q Consensus 610 aSgs~DgtIrIWDlr--s~-~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~---~~~V~ 679 (721)
++.+.++.|.+||+. ++ ... ....+....... .++++++|.+.++...++.|.+|+..++.+..+ ...+.
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTT 274 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEE
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcE
Confidence 555667899999986 44 321 122232222333 799999999888877778999999877654443 23588
Q ss_pred EEEEC-CCC
Q 004969 680 AAYTR-PSS 687 (721)
Q Consensus 680 ~v~fs-P~~ 687 (721)
+++|. |++
T Consensus 275 ~~af~g~d~ 283 (326)
T 2ghs_A 275 CPAFIGPDA 283 (326)
T ss_dssp EEEEESTTS
T ss_pred EEEEecCCC
Confidence 89998 887
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.02 E-value=1.5e-08 Score=119.02 Aligned_cols=179 Identities=6% Similarity=-0.007 Sum_probs=119.9
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY 570 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~ 570 (721)
+|...+.+++|+ +++++|+.++.++ .|++||+.+++.... ... ...+.+++|+|++..|+.++.
T Consensus 122 ~~~~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~---------~~~-~~~~~~~~wspDg~~l~~~~~ 190 (710)
T 2xdw_A 122 DGTVALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---------VLE-RVKFSCMAWTHDGKGMFYNAY 190 (710)
T ss_dssp TSCEEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---------EEE-EECSCCEEECTTSSEEEEEEC
T ss_pred CCCEEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc---------ccc-CcccceEEEEeCCCEEEEEEE
Confidence 344568899999 7888888766543 899999998654210 111 112567999999999999987
Q ss_pred CCc----------------EEEEECCCCcE--EEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEECCC-
Q 004969 571 SKN----------------IALYDINSGRR--LQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQ- 625 (721)
Q Consensus 571 Dg~----------------IrlWDl~s~~~--v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~-----DgtIrIWDlrs- 625 (721)
++. |++|++.+++. ...+.. .|...+..+.|+|+| +.++.++. +..|++||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~ 269 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQE 269 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccc
Confidence 765 99999998762 233332 145668899999999 56655543 56899999976
Q ss_pred -----CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC----cEEEEEcCCC------ccccccc--CeEEEEECCCC
Q 004969 626 -----KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT----SMFVQSLRGD------PFRDFNM--SILAAYTRPSS 687 (721)
Q Consensus 626 -----~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg----~I~VWDl~g~------~l~~~~~--~V~~v~fsP~~ 687 (721)
+.. ....+..+.......|+|+|..|+..+..+ .|.+||+.+. .+..+.. .+..+.|+|++
T Consensus 270 ~~~~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 270 SNGITGIL-KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSCSSC-CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccccCCcc-ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 421 122233333333346899999887766533 5999998742 2333322 56678888776
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.01 E-value=2.1e-07 Score=95.35 Aligned_cols=214 Identities=5% Similarity=-0.034 Sum_probs=148.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.++++.+ ++.+.++...++.|..||.. ++.. .+........+.++++. +++.++++...++.|..||.. ++..
T Consensus 63 ~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 63 KVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEE
T ss_pred cceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEE
Confidence 588999999 88888877778899999988 6553 33322344678999987 577777777778899999987 3321
Q ss_pred ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
. .... ....+.++++.+++..+++...++.|..||. +++........+...+..+++.++| +++++..
T Consensus 138 ~---------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~ 206 (300)
T 2qc5_A 138 E---------YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEI 206 (300)
T ss_dssp E---------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred E---------ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEcc
Confidence 0 0111 2245788999888886665555788999998 5655432221245678999999988 7777776
Q ss_pred CCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCC
Q 004969 614 FDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSS 687 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~ 687 (721)
..+.|.+||. ++... ..... ....+..++++++|+..++...++.|..|+..+.. ..+ ...+.+++..|++
T Consensus 207 ~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 207 MGNKIGRITT-TGEIS-EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI-QEYQLQTENAEPHGITFGKDG 283 (300)
T ss_dssp TTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-EEEECCSTTCCCCCEEECTTS
T ss_pred CCCEEEEEcC-CCcEE-EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcE-EEEECCccCCccceeEeCCCC
Confidence 7788999998 44332 22233 23345589999999977776667899999986432 221 2356777888887
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.99 E-value=8.5e-08 Score=110.23 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=150.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEee---CCCCEEEEEe-CCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLK---KYPSKLIAGS-DNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp---~d~~~LaSgs-~DGtVrIWDi 528 (721)
.+..+.|+| +++++++++.||.|.+||+. +++.+..+.. + .....++|++ ++++++++++ .+++|.++|.
T Consensus 198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 477899999 99999999999999999995 8888888763 2 3467899985 5888777766 4599999998
Q ss_pred CCCCCcccccccCcc---eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 529 RHMPPSIRGMHYGAG---TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
.+.+.. ........ ...+.....+..+..++++..+++.- .+|.|.++|..+.+...............+.|+|+
T Consensus 274 ~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd 352 (567)
T 1qks_A 274 ETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS 352 (567)
T ss_dssp TTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred CCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence 876542 11110000 00001112467788888777766655 46999999998764332222114556778999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEe-c--CCCC-eEEEEEecCCCEE-EEEe-CCCcEEEEEcCC--C------c
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTA-S--SSKG-NVMVCFSPDDHYL-LGKG-SGTSMFVQSLRG--D------P 670 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~-~--~~~~-~vsl~fSpdg~~L-asgs-~Dg~I~VWDl~g--~------~ 670 (721)
|..++++...++.|.++|+.+++....... . .|.+ ... -++|++..+ +++. .++.|.++|... + .
T Consensus 353 gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv 431 (567)
T 1qks_A 353 HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 431 (567)
T ss_dssp SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence 954555566789999999999865444433 1 1221 212 268875444 4553 468999999873 1 1
Q ss_pred ccccc---cCeEEEEECCCCCcccc
Q 004969 671 FRDFN---MSILAAYTRPSSKSEIV 692 (721)
Q Consensus 671 l~~~~---~~V~~v~fsP~~~~~~v 692 (721)
++... ..-..+..||+++..++
T Consensus 432 v~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 432 LDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEEEECSCSCCCCEECCTTCSEEEE
T ss_pred EEEEecCCCCCEEEEeCCCCCeEEE
Confidence 12211 12233667898864444
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.98 E-value=3.9e-08 Score=116.31 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=140.4
Q ss_pred CeEEEEEeCCCCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-------
Q 004969 455 RPRQFEYHPSISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS------- 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt------- 522 (721)
.+..++||| ||++||.++.+ .+|++||+.+|+.+.... +...+..++|+ ++ +.|+.++.|+.
T Consensus 164 ~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 164 ALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---KWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---EEEESCCCEES-TT-SEEEEEECCCC-------
T ss_pred EEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---CCceeccEEEE-CC-CEEEEEEecCcccccccc
Confidence 478899999 99999887654 469999999998765321 11223578898 56 77877776654
Q ss_pred -------EEEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--cEE
Q 004969 523 -------LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSK-----NIALYDINSG--RRL 585 (721)
Q Consensus 523 -------VrIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg-----~IrlWDl~s~--~~v 585 (721)
|.+|++.++... ....+.. ...+.++.|+|+|..++.++.++ .|++||+.++ +..
T Consensus 238 ~~~~~~~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSA--------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -CCCCCEEEEEETTSCGGG--------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cCCCCCEEEEEECCCCchh--------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 889998775421 1112221 12478999999999988877543 7999999877 414
Q ss_pred EEEccccCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969 586 QVFADMHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS 660 (721)
Q Consensus 586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~ 660 (721)
..+.. +...+.... .|+| ..|+..+. ++.|.+||+.++.......+..+...+ .++|+ ++.++++...|+.
T Consensus 310 ~~l~~-~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 310 TALIP-DLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEEEC-SSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred EEecC-CCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 45544 444455543 4888 45555554 345999999874201122224444445 67777 5667778888887
Q ss_pred EEEE--EcCCCccccc----ccCeEEEEECCCCC
Q 004969 661 MFVQ--SLRGDPFRDF----NMSILAAYTRPSSK 688 (721)
Q Consensus 661 I~VW--Dl~g~~l~~~----~~~V~~v~fsP~~~ 688 (721)
.+|| ++.|...+.. ...+..+.++|+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 6666 4445543322 34677888999874
No 203
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.94 E-value=3.7e-08 Score=103.96 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=120.8
Q ss_pred eEEEEEeCCCCCEEEEEECC---------------------------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEee
Q 004969 456 PRQFEYHPSISCLMVFGTLD---------------------------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK 508 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~D---------------------------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp 508 (721)
+..++|+| +++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+
T Consensus 106 ~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~s- 179 (347)
T 2gop_A 106 IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWH- 179 (347)
T ss_dssp EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEE-
T ss_pred ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCC-
Confidence 67899999 88888887632 5799999998887455553 2 68889998
Q ss_pred CCCCEEEEEeCCC-------eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------Cc
Q 004969 509 KYPSKLIAGSDNG-------SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KN 573 (721)
Q Consensus 509 ~d~~~LaSgs~DG-------tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~ 573 (721)
+++ ++++++.++ ...||.+.+++. ..+ ..+ ..+..+ +|++..++.++.+ ..
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l--------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKM--------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEE--------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred CCe-EEEEEecccccccccccccEEEeCCCce--EEe--------ccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence 677 777776542 445555543221 111 111 233443 8999988887753 36
Q ss_pred EEEEECCCCcEEEEEccccCCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCE
Q 004969 574 IALYDINSGRRLQVFADMHKEHINV-VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHY 651 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~h~~~V~s-I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~ 651 (721)
|.+|| +++......+ +...+.. +.|+ ++ ++++++.++.+++| +.+++. .....+ .+.+ +++|+| .+
T Consensus 246 l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~--~~~~~~-~~~v~~~~~s~--~~ 313 (347)
T 2gop_A 246 LYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI--KPIAKG-RHWIMGFDVDE--IV 313 (347)
T ss_dssp EEEEC--SSCEEESSTT-CCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE--EEEECS-SSEEEEEEESS--SE
T ss_pred EEEEC--CCceEecccc-CCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce--EEEecC-CCeEEeeeeeC--cE
Confidence 88888 5554433333 6778886 9999 76 88899999999999 875543 222233 4455 899999 67
Q ss_pred EEEEeCCCcE-EEEEcC
Q 004969 652 LLGKGSGTSM-FVQSLR 667 (721)
Q Consensus 652 Lasgs~Dg~I-~VWDl~ 667 (721)
+++++.++.. .+|.+.
T Consensus 314 ~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEECSSSCCEEEEES
T ss_pred EEEEcCCCChHHheEeC
Confidence 7777767654 666654
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.92 E-value=1.8e-07 Score=97.30 Aligned_cols=187 Identities=8% Similarity=-0.003 Sum_probs=133.9
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~ 534 (721)
+.++.++| ++++++ +.++.|+.||. +|+.+..+.. ++...+.++.+. ++++.+++.+. ++.|..+|.. ++..
T Consensus 39 ~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~-Gk~l 111 (276)
T 3no2_A 39 CNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNMK-GEVL 111 (276)
T ss_dssp CCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECTT-SCEE
T ss_pred CcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEEC-CCCCEEEEecCCCCEEEEEeCC-CCEE
Confidence 67889999 899888 45788999999 7999988874 223468888887 78899998887 7788777763 3321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~ 614 (721)
.. ....... ..+......+++.++++.+++...++.|..||.. |+.++++.. ...+.++...++| +++++++.
T Consensus 112 ~~-~~~~~~~--~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g-~~~v~~~~ 184 (276)
T 3no2_A 112 SK-TEFETGI--ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNG-DCLVACGD 184 (276)
T ss_dssp EE-EEECCSC--SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTS-CEEEECBT
T ss_pred EE-EeccCCC--CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCC-CEEEEeCC
Confidence 11 1100000 0111234455677889999888889999999998 999999984 3456678888988 78888888
Q ss_pred CCcEEEEECCCCCceeEEEecC----CCC-eEEEEEecCCCEEEEEe
Q 004969 615 DQDVKLWDLRQKPIQPCYTASS----SKG-NVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 615 DgtIrIWDlrs~~~~~~~~~~~----~~~-~vsl~fSpdg~~Lasgs 656 (721)
++.|..+|..+++..-.+.... ... +..+...++|..+++..
T Consensus 185 ~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 185 AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 8899999999886543333211 111 23788889999888874
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=3.9e-08 Score=115.52 Aligned_cols=217 Identities=11% Similarity=0.127 Sum_probs=140.3
Q ss_pred CeEEEEEeCCCCCEEEEE-----ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--------
Q 004969 455 RPRQFEYHPSISCLMVFG-----TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-------- 521 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasG-----s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-------- 521 (721)
.+..++||| |++++|-+ +...+|++||+.+|+.+.... .+ ....+++|+ +++.|+.++.+.
T Consensus 130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~--~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD--VKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE--EESCCCEEE--TTTEEEEEESSCCC------
T ss_pred EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC--ceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 588899999 99988843 334689999999998654321 01 112467897 778888877774
Q ss_pred -----eEEEEEcCCCCCcccccccCcceeEecc----CCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCc-EEEE
Q 004969 522 -----SLKLYDIRHMPPSIRGMHYGAGTVTFDE----FDQLTSVHVNSMDELFLASGY----SKNIALYDINSGR-RLQV 587 (721)
Q Consensus 522 -----tVrIWDi~~~~~~~~~~~~~~~~~~~~~----~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~~-~v~~ 587 (721)
.|++|++.++... ....+.. ...+.++.|+|++..++.... ...|+++|+.++. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~--------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQED--------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -CCCCEEEEEETTSCGGG--------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cCCCcEEEEEECCCCccc--------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 3999998875431 1111211 223678899999998866543 2589999998764 3445
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cE
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SM 661 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I 661 (721)
+.. +....... ++++|..+++++..+ +.|..||+.++.......+..+...+. .|++++++|+....++ .|
T Consensus 276 l~~-~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 276 VQG-DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EEC-SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEEEE
T ss_pred EeC-CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCeeEE
Confidence 554 55555555 666675666666554 679999998865421122222333333 8999999888776544 68
Q ss_pred EEEEcCCCccccc----ccCeEEEEECCCCC
Q 004969 662 FVQSLRGDPFRDF----NMSILAAYTRPSSK 688 (721)
Q Consensus 662 ~VWDl~g~~l~~~----~~~V~~v~fsP~~~ 688 (721)
++|++.|...+.. ...+..+.++|++.
T Consensus 353 ~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 353 EQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp EEECTTSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred EEEECCCCeeEEeecCCCceEEeeecCCCCC
Confidence 8999886554332 23455666777763
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.89 E-value=3.4e-07 Score=94.83 Aligned_cols=195 Identities=9% Similarity=0.085 Sum_probs=129.4
Q ss_pred CeEEEEEeCCC-CCEEEEEECCCeEEEEECCCCeEEEE-eecC--CCCCCeEEEEEeeCCCCEEEEEeCC----------
Q 004969 455 RPRQFEYHPSI-SCLMVFGTLDGEIVVVNHENENIVSY-IPSF--GAMNSVLGLCWLKKYPSKLIAGSDN---------- 520 (721)
Q Consensus 455 ~V~~lafsP~d-g~~LasGs~DG~I~IWdl~tg~~i~~-l~~~--~H~~~V~sl~fsp~d~~~LaSgs~D---------- 520 (721)
.+.++++++ + +.++++. ..+.|.+||.. ++.... .... .....+.++++. ++++++++...+
T Consensus 72 ~~~~i~~~~-~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 72 IPAGCQCDR-DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp CEEEEEECS-SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBT
T ss_pred CCceEEEec-CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCccccccccccc
Confidence 488999999 6 6655544 44579999998 765433 2211 112458899997 677777776655
Q ss_pred -----CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe----cCCCEEEEEe-CCCcEEEEECC-CCcE-----
Q 004969 521 -----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN----SMDELFLASG-YSKNIALYDIN-SGRR----- 584 (721)
Q Consensus 521 -----GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s----p~~~~lls~g-~Dg~IrlWDl~-s~~~----- 584 (721)
+.|..||.. ++. . ....+......++++ ++++.++++. .++.|.+||.. +++.
T Consensus 148 ~~~~~~~l~~~~~~-g~~--~--------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~ 216 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQM--I--------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp TSSSCEEEEEECTT-SCE--E--------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred ccCCCCeEEEECCC-CCE--E--------EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence 566666654 221 1 111122345788998 8887666665 57899999986 4542
Q ss_pred EEEEccccC-CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEE
Q 004969 585 LQVFADMHK-EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMF 662 (721)
Q Consensus 585 v~~l~~~h~-~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~ 662 (721)
...+.+ +. ..+..++++++| +++++...++.|.+||..+++........ ...+.+++|+|+|++|+++ ..++.|.
T Consensus 217 ~~~~~~-~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 217 WGHIPG-THEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEECCC-CSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEECCC-CCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 222322 33 568899999999 78888888899999999866543333322 2344589999999966544 4567899
Q ss_pred EEEcC
Q 004969 663 VQSLR 667 (721)
Q Consensus 663 VWDl~ 667 (721)
.|++.
T Consensus 294 ~~~~~ 298 (314)
T 1pjx_A 294 KFEWQ 298 (314)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 99986
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.87 E-value=4e-08 Score=115.29 Aligned_cols=194 Identities=11% Similarity=-0.033 Sum_probs=128.6
Q ss_pred EEEEEeCCCCCEEEEEECCCe-------------EEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969 457 RQFEYHPSISCLMVFGTLDGE-------------IVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~-------------I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG 521 (721)
..++|+| |++.|+.++.|.. |++|++.++. ....+....|...+.++.|+ +++++|+.++.++
T Consensus 171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS-RDGKYLFVYILRG 248 (695)
T ss_dssp CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC-TTSCCEEEEEEET
T ss_pred cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC-CCCCEEEEEEeCC
Confidence 5789999 9999999998876 9999999876 23334434566789999998 6888887777665
Q ss_pred ----eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCcE---EEEEcc
Q 004969 522 ----SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SKNIALYDINSGRR---LQVFAD 590 (721)
Q Consensus 522 ----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~~~---v~~l~~ 590 (721)
.|.+|+..++.. . ....+...+....+ ++++ ++..+. ++.|.+||+.+++. ...+..
T Consensus 249 ~~~~~l~~~~~~~~~~--~--------~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDF--R--------LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp TTEEEEEEECTTCSSC--E--------EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred CCceEEEEEcCCCCce--E--------EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 566665443321 1 11122334455556 5666 555553 57899999987753 333332
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-CCCceeEEEecCC-CCeE-EEEEecCCCEEEEEe----CCCcEEE
Q 004969 591 MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPIQPCYTASSS-KGNV-MVCFSPDDHYLLGKG----SGTSMFV 663 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~~-~~~v-sl~fSpdg~~Lasgs----~Dg~I~V 663 (721)
.....+..++|+ ++ .++++...|+..++|.+. ++.. ...+..+ .+.+ .++++|++..++... ..+.|++
T Consensus 317 ~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 317 DSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKP--VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCE--EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCe--eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 114567888888 45 789999999998888654 2322 2333333 4444 688899998776433 2468999
Q ss_pred EEcCC
Q 004969 664 QSLRG 668 (721)
Q Consensus 664 WDl~g 668 (721)
||+.+
T Consensus 393 ~d~~~ 397 (695)
T 2bkl_A 393 TSVST 397 (695)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99874
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.82 E-value=4.1e-07 Score=95.19 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=137.5
Q ss_pred eEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+....|+| +++ +++++..++.|..|+. +++. ..+. .+...+.++++. ++++++++...++.|.+|+.. +...
T Consensus 47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEE
Confidence 66789999 776 7778888899999998 4553 3333 344678999997 677766665566889999986 3321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEEccccCCCeE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA----SGY-------------SKNIALYDINSGRRLQVFADMHKEHIN 597 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls----~g~-------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~ 597 (721)
.+...... .....+.++++++++..+++ +.. .+.|..||..+++..... .....+
T Consensus 120 --~~~~~~~~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~ 191 (305)
T 3dr2_A 120 --LLVGRYAG---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN 191 (305)
T ss_dssp --EEECEETT---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred --EEEeccCC---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence 11000000 01134678899998887775 221 256888888777654433 234568
Q ss_pred EEEEcCCCCcEEEEEECC------CcEEEEECCCCCcee--EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 598 VVKFSNHSPSIFATSSFD------QDVKLWDLRQKPIQP--CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~D------gtIrIWDlrs~~~~~--~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
.++|+|++ ..++.+... +.|++||+..+.... .+.......+-.++++++|++.++. .+.|.+|+..|+
T Consensus 192 gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~ 268 (305)
T 3dr2_A 192 GLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ 268 (305)
T ss_dssp EEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSEEEEECTTSC
T ss_pred ceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCcEEEECCCCC
Confidence 89999999 556555554 789999987643111 1111111122268999999965544 345999999877
Q ss_pred ccccc--ccCeEEEEECCCC
Q 004969 670 PFRDF--NMSILAAYTRPSS 687 (721)
Q Consensus 670 ~l~~~--~~~V~~v~fsP~~ 687 (721)
.+..+ ...+..++|.|++
T Consensus 269 ~~~~~~~~~~~~~~~f~~d~ 288 (305)
T 3dr2_A 269 LLGHIPTPGTASNCTFDQAQ 288 (305)
T ss_dssp EEEEEECSSCCCEEEECTTS
T ss_pred EEEEEECCCceeEEEEeCCC
Confidence 65443 2257788999887
No 209
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=2.9e-09 Score=102.97 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=76.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|+++.+.. +.++...--.-+.|+|++|+|..+..++.+.+|.+|+|+ .|.|+.++.+.|..+|+|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEEC
Confidence 367888888877653 233333222567899999999999888899999999999 78899998899999999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhh
Q 004969 180 CETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.+|+|..+ ..+..+.++++|++|
T Consensus 96 ~~N~i~~~-~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 96 TNNSLVEL-GDLDPLASLKSLTYL 118 (176)
T ss_dssp CSCCCCCG-GGGGGGGGCTTCCEE
T ss_pred CCCcCCcc-hhhHhhhcCCCCCEE
Confidence 99998754 334456677777555
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.76 E-value=6.6e-07 Score=95.50 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=145.3
Q ss_pred CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeec-----CCCCCCeEEEEEeeCCCCEEEEEeC-----CCe
Q 004969 455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKKYPSKLIAGSD-----NGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~-----~~H~~~V~sl~fsp~d~~~LaSgs~-----DGt 522 (721)
.|..++++| +++++++.. .+|.++||.+.+++.. .++. .+|...+.++++. +++.++++-.. ++.
T Consensus 18 ~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 18 APGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp CEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCE
T ss_pred CcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCe
Confidence 488999999 888888864 2343566655556533 3321 2355789999997 55665555433 578
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccC-----
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHK----- 593 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~----- 593 (721)
|.+||+.+++.. ......... ..+...+..++++++++.++.+. .++.|.+||+.+++..+.+.+ |.
T Consensus 95 i~~~d~~tg~~~-~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~-~~~~~~~ 170 (343)
T 2qe8_A 95 LVAWDTLNNQLS-RVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG-YPGIAPE 170 (343)
T ss_dssp EEEEETTTTEEE-EEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT-CTTTSCC
T ss_pred EEEEECCCCeEE-EEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC-CCccccc
Confidence 999999876531 111000000 01123468899988766665554 468899999998887665532 21
Q ss_pred ------------------------CCeEEEEEcCCCCcEEEEEECCC-cEEEEECC---CCCc-----eeEEEecCCC-C
Q 004969 594 ------------------------EHINVVKFSNHSPSIFATSSFDQ-DVKLWDLR---QKPI-----QPCYTASSSK-G 639 (721)
Q Consensus 594 ------------------------~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDlr---s~~~-----~~~~~~~~~~-~ 639 (721)
..++.|+|+|+| +.++.+..++ .+..++.. .+.. .......++. .
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 236889999999 6677766655 44444432 1110 0000111111 2
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEc-CCCccccc-----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSL-RGDPFRDF-----NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl-~g~~l~~~-----~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+..++++++|.++++...++.|.+||. .|.. ... -..+..+++.|++ .++++.+..
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g-------~l~v~~~~~ 311 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDG-------YLYFDCNQL 311 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTS-------CEEEEECCG
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCC-------cEEEEeCcc
Confidence 226899999999999888999999999 5542 211 2357889999988 777777654
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.72 E-value=5.3e-07 Score=106.60 Aligned_cols=195 Identities=9% Similarity=0.071 Sum_probs=126.7
Q ss_pred EEEEEeCCCCCEEEEEECCCe--------------EEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969 457 RQFEYHPSISCLMVFGTLDGE--------------IVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~--------------I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D 520 (721)
..++|+| | +.|+.++.++. |++|++.++.. ...+....+...+.++.|+ +++++|+..+.+
T Consensus 212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~ 288 (741)
T 1yr2_A 212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS-SDGRWVVITSSE 288 (741)
T ss_dssp CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEEC
T ss_pred ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEc
Confidence 4688999 7 88888877654 89999987652 3334433444568899998 788888877755
Q ss_pred C-----eEEEEEcCCCCCc-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCC--cEEEEE
Q 004969 521 G-----SLKLYDIRHMPPS-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SKNIALYDINSG--RRLQVF 588 (721)
Q Consensus 521 G-----tVrIWDi~~~~~~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~--~~v~~l 588 (721)
+ .|.+||+.++... ...+ ..+...+.... +++++.++..+. .+.|.+||+.++ +....+
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l--------~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTAL--------IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEE--------ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred cCCCcceEEEEECCCCCCcccEEe--------cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 4 8999999875111 1111 11222333333 378888888875 345999999875 333334
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-CCCceeEEEecC-CCCeE-EEEEecCCCEEEEEe----CCCcE
Q 004969 589 ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPIQPCYTASS-SKGNV-MVCFSPDDHYLLGKG----SGTSM 661 (721)
Q Consensus 589 ~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs----~Dg~I 661 (721)
.. +...+..++|. ++ .++++...|+..+||.+. ++.. ...+.. ..+.+ .++++|++..++... ..+.|
T Consensus 360 ~~-~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 360 PE-SKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP--AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp CC-CSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE--EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred cC-CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc--eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 33 55567778887 34 688999999988877654 2322 233332 23444 788999988665332 24689
Q ss_pred EEEEcCC
Q 004969 662 FVQSLRG 668 (721)
Q Consensus 662 ~VWDl~g 668 (721)
++||+.+
T Consensus 435 ~~~d~~t 441 (741)
T 1yr2_A 435 LALDPAT 441 (741)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999864
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.71 E-value=8.8e-09 Score=111.81 Aligned_cols=185 Identities=14% Similarity=0.106 Sum_probs=101.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
++..+++|+.||.|+.||..+|+.+..+.. +.+.+..+. .++..+++++.||.|+.||..+++............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 568899999999999999999999988764 334443343 456677888899999999998876532211100000
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr 624 (721)
. ...++. ..++.+++++.|+.++.||..+|+.++.+.. +. ...++|++ ..+++++.|+.|+.||.+
T Consensus 83 ~---~~sp~~-----~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 83 V---QASPCR-----SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPST-SLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp H---TTCSCC----------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSS
T ss_pred c---ccCceE-----ecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccC-CEEEEEecCCEEEEEECC
Confidence 0 011111 1356777788899999999999999988874 32 23456766 688889999999999999
Q ss_pred CCCceeEEEecCCCCeEEEEEecCC---CEEEEEeCCCcEEEEEcC-CCcc
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDD---HYLLGKGSGTSMFVQSLR-GDPF 671 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg---~~Lasgs~Dg~I~VWDl~-g~~l 671 (721)
+++..-.+..... ...++++++ ..+++++.+|.++.||.+ |+.+
T Consensus 149 tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 149 TRELRWNATYFDY---AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp SSSCCCEEEEEEE---CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred CCCEEEeEecccc---cCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 9865433332211 122333332 556778889999999986 5543
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.70 E-value=4.6e-06 Score=86.87 Aligned_cols=187 Identities=9% Similarity=0.022 Sum_probs=123.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC---------CeE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN---------GSL 523 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D---------GtV 523 (721)
.|.+++++| +++++++ . ++.|.+||..+++......... ....+.++++. ++++++++.... ..-
T Consensus 55 ~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 55 PVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp CEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCE
T ss_pred ceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCc
Confidence 588999999 8885554 4 5679999999887654333211 22457889997 677766654322 234
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcEE--E---EEccccCCC
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDI--NSGRRL--Q---VFADMHKEH 595 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl--~s~~~v--~---~l~~~h~~~ 595 (721)
.+|.+...... ............++|+|++..++.+. .++.|.+||+ .++... + .+.. +...
T Consensus 131 ~l~~~d~~g~~---------~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~ 200 (297)
T 3g4e_A 131 ALYSLFPDHHV---------KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQI 200 (297)
T ss_dssp EEEEECTTSCE---------EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCE
T ss_pred EEEEEECCCCE---------EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCC
Confidence 55655432111 11112223457899999998776665 4788999997 455432 2 2222 3457
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEeC
Q 004969 596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGS 657 (721)
Q Consensus 596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~ 657 (721)
+..+++.++| ++.++....+.|..||..+++.......+ ...+.+++|. |+++.|++++.
T Consensus 201 p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 201 PDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence 8899999999 78888888889999999887654444333 2345589998 89888776654
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.70 E-value=3.4e-06 Score=91.61 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=129.0
Q ss_pred CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
.+..+.|+| ++++++++.. ++.|.++| .+++.+.. +... .. +.+.|.....+++.+.||.+.++|. ++
T Consensus 126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---TC---YHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---ce---EEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 367899999 9999998874 57899999 99998887 6532 22 3344455667788889999999999 65
Q ss_pred CCcccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEcc---------ccCCCeEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFAD---------MHKEHINVV 599 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~---------~h~~~V~sI 599 (721)
+....... . .. +....++ ....+.++++.++..+..+.+.+.|+.++. .+..+.- ........+
T Consensus 197 ~~~~~~~~--~-~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 197 GAAGAGLV--G-AM-LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred cEEEEEec--c-cc-ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 43211000 0 00 0111121 223455666666666678899999997653 2222210 012334457
Q ss_pred EEcCCCCcEEEEEE---------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969 600 KFSNHSPSIFATSS---------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG 668 (721)
Q Consensus 600 ~fsPdg~~lLaSgs---------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g 668 (721)
.++|++..++++.. ..+.|.++|..+.+.. ..+.....+..++|+|||+ .++++. .++.|.+||...
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv--~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE--EEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 89999854444433 2357999999988553 3444444566899999999 777776 589999999983
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.63 E-value=1.8e-05 Score=85.91 Aligned_cols=214 Identities=8% Similarity=-0.081 Sum_probs=135.6
Q ss_pred EEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC--C
Q 004969 458 QFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD--N 520 (721)
Q Consensus 458 ~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~--D 520 (721)
.++++| ++++++++. .++.|.+||..+.+.+..+...+. ......+.|+ +++++|++++. +
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAG 147 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCC
Confidence 799999 888888875 367899999999888887764200 1234578898 78888888774 5
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCC
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFAD----MHKEH 595 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~ 595 (721)
+.|.++| .+++.. .. . ..... ++.+.+.+ ..+++.+.||.+.++|. +++.+..... ....+
T Consensus 148 ~~v~viD-~t~~~~-~~------~--i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 148 PAVGLVV-QGGSSD-DQ------L--LSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred CeEEEEE-CCCCEE-eE------E--cCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 7899999 876531 11 0 11111 13334554 34555667999999999 8877633220 01122
Q ss_pred -eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-----------CCCeEEEEEecCCCEEEEEeC------
Q 004969 596 -INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----------SKGNVMVCFSPDDHYLLGKGS------ 657 (721)
Q Consensus 596 -V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-----------~~~~vsl~fSpdg~~Lasgs~------ 657 (721)
.....+.+++..++++. ..+.+.+.|+.+........+.. ..+...++++|++..++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred eeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 12345666664444444 67899999997653222222110 111223788999998887653
Q ss_pred ----CCcEEEEEcCCCc-cccc--ccCeEEEEECCCCC
Q 004969 658 ----GTSMFVQSLRGDP-FRDF--NMSILAAYTRPSSK 688 (721)
Q Consensus 658 ----Dg~I~VWDl~g~~-l~~~--~~~V~~v~fsP~~~ 688 (721)
.+.|.++|..... ++.. ......++|+|+++
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence 3579999987433 3333 34588999999994
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.63 E-value=9.4e-07 Score=94.31 Aligned_cols=205 Identities=9% Similarity=-0.004 Sum_probs=131.8
Q ss_pred CeEEEEEeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecC----CCCCCeEEEEEeeCCCCEEEEEe---CCCe
Q 004969 455 RPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSF----GAMNSVLGLCWLKKYPSKLIAGS---DNGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~----~H~~~V~sl~fsp~d~~~LaSgs---~DGt 522 (721)
.|..++++| ++.++++-.. ++.|.+||+.+++.+..+... .+...+..+++.+.++..+++.. .++.
T Consensus 68 ~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 68 TVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp CEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 699999999 7777766544 578999999999987777542 12345688999744455556655 6889
Q ss_pred EEEEEcCCCCCcccccccCc------ceeEec---------------cCCCeEEEEEecCCCEEEEEeCCC-cEEEEECC
Q 004969 523 LKLYDIRHMPPSIRGMHYGA------GTVTFD---------------EFDQLTSVHVNSMDELFLASGYSK-NIALYDIN 580 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~------~~~~~~---------------~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~ 580 (721)
|.+||..+++. .....++. ...... ....+..++++|++..++++..++ .+..++..
T Consensus 147 i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 147 LIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred EEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 99999987543 11111100 000000 012368899999998888887655 45555432
Q ss_pred ---CCc--------EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969 581 ---SGR--------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 581 ---s~~--------~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg 649 (721)
.+. .+..+ + +......++++++| +++++...++.|.+||..+++...+........+..++|.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-g-~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERY-S-EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEE-E-ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred HhcCCCCChhhhhcceEec-c-cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 111 01111 2 34456779999998 8999988999999999855543333332212334589999999
Q ss_pred CEEEEEeCCCcEEEE
Q 004969 650 HYLLGKGSGTSMFVQ 664 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VW 664 (721)
.++++.+..+.+.+|
T Consensus 303 ~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPL 317 (343)
T ss_dssp CEEEEECCGGGSGGG
T ss_pred cEEEEeCcccccccc
Confidence 888887755554333
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.62 E-value=2.9e-06 Score=93.27 Aligned_cols=201 Identities=7% Similarity=0.003 Sum_probs=131.3
Q ss_pred eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEee-c-CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIP-S-FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~-~-~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~ 531 (721)
+. ++|+| +++.++++..++ .|.+|+..++.....+. . ..+...+.+++++|.++ .|+.+..++.|..||..++
T Consensus 174 ~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 174 GK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp CB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTC
T ss_pred Cc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCC
Confidence 44 89999 888888888766 79999987665443331 1 11345678899984344 4555777899999999875
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEcccc---------------CCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMH---------------KEH 595 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h---------------~~~ 595 (721)
............. ....+...++|+|+++.++++. ..+.|+.||.... +..+.+ + -..
T Consensus 251 ~~~~~~~~~~~g~---~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g-~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 251 EVTLIKQLELSGS---LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCG-SATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp CEEEEEECCCCSC---CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEE-CTTCCSCBCEEGGGCBCSS
T ss_pred CEEEEecccccCC---CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEe-CCCCCCcCCCcccccEeCC
Confidence 4311100000000 0001123899999766666665 5788999997643 333332 2 245
Q ss_pred eEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCceeEEEecC-------------CCCeEEEEEecCCCEEEEEeCCCcE
Q 004969 596 INVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCYTASS-------------SKGNVMVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 596 V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~~~~~~~-------------~~~~vsl~fSpdg~~Lasgs~Dg~I 661 (721)
...++++|+| +++++-+ .++.|+.||+.++....+.-..+ -..+..++++++|.++++-..++.|
T Consensus 325 P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 325 PNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp EEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred CeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence 7899999999 6888877 88999999987764322221100 1235589999998888888888888
Q ss_pred EEEEc
Q 004969 662 FVQSL 666 (721)
Q Consensus 662 ~VWDl 666 (721)
+.+++
T Consensus 404 r~i~~ 408 (409)
T 3hrp_A 404 RKYAV 408 (409)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 218
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=1.1e-05 Score=83.53 Aligned_cols=195 Identities=9% Similarity=0.031 Sum_probs=133.4
Q ss_pred eEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
+..++|+| ++.++++.+. ++.|.++|+.+++.+..+....+ ....++++. .+...++.-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 67899999 6655555443 68999999999999998875332 233456664 334445555789999999988554
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lL 609 (721)
. .. +... ... ...+++++..++++..++.|.++|..+.+.+..+.-+ +. ..++.+.|. +| .++
T Consensus 99 ~-~~-------i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ly 165 (266)
T 2iwa_A 99 I-KN-------FTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVW 165 (266)
T ss_dssp E-EE-------EECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred E-EE-------EECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEE
Confidence 2 11 1111 011 1224457888887777889999999999888877631 11 246788888 66 677
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCC------------CCeEEEEEecCCCEEE-EEeCCCcEEEEEcC
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSS------------KGNVMVCFSPDDHYLL-GKGSGTSMFVQSLR 667 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~------------~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~ 667 (721)
+....++.|.+.|..+++......+.+- .....++|+|+++.++ ++...+.+++-++.
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 6666789999999999977655554311 2335899999987555 55567888888876
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.56 E-value=1.9e-05 Score=83.46 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=117.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-C-CCCeEEEEEeeCCCCEEEEEeC------CCeEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-A-MNSVLGLCWLKKYPSKLIAGSD------NGSLKLY 526 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H-~~~V~sl~fsp~d~~~LaSgs~------DGtVrIW 526 (721)
.|.+++|+| +++++++. .+ .|.+||..+++......... . ...+.++++. ++++++++... .+.|..+
T Consensus 91 ~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 91 MGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp CEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEE
T ss_pred cceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEE
Confidence 488999999 77776654 44 49999998887654332211 1 2468899998 57776665542 2445555
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC--CC-c-----EEEEEccccCCCeE
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN--SG-R-----RLQVFADMHKEHIN 597 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~--s~-~-----~v~~l~~~h~~~V~ 597 (721)
+ +++. ..+ .........++|++++..++.+. .++.|.+||+. ++ + ....+.. ....+.
T Consensus 167 ~--~g~~--~~~--------~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~ 233 (326)
T 2ghs_A 167 A--KGKV--TKL--------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMD 233 (326)
T ss_dssp E--TTEE--EEE--------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEE
T ss_pred e--CCcE--EEe--------eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-CCCCCC
Confidence 5 3221 110 11123457899999998776665 46889999986 55 3 1222322 345678
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEeCC
Q 004969 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGSG 658 (721)
Q Consensus 598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~D 658 (721)
.+++.++| ++.++...++.|.+||.. ++........ ...+.+++|+ ++++.|++++..
T Consensus 234 gi~~d~~G-~lwva~~~~~~v~~~d~~-g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 234 GSVCDAEG-HIWNARWGEGAVDRYDTD-GNHIARYEVP-GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEECTTS-CEEEEEETTTEEEEECTT-CCEEEEEECS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred eeEECCCC-CEEEEEeCCCEEEEECCC-CCEEEEEECC-CCCcEEEEEecCCCCEEEEEecC
Confidence 89999999 777777777899999984 4433333322 2234589998 898877665543
No 220
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.56 E-value=3.8e-05 Score=78.33 Aligned_cols=217 Identities=8% Similarity=0.014 Sum_probs=135.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+..++|+|.++.++++-..++.|.+++..++.....+. .......++++.+..+..+++-...+.|.+++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 478899999445555566667899999998665443332 223467899997434555556566789999998753321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
. ...........++++|+++.++.+.. .+.|..+++.. +....+..........++++|++..++++
T Consensus 115 ~---------~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 115 V---------LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp E---------EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred E---------EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 0 10011134588999997777776664 36888888863 33333321133568899999987566677
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC-CCcccccc----cCeEEEEECC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR-GDPFRDFN----MSILAAYTRP 685 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~-g~~l~~~~----~~V~~v~fsP 685 (721)
-...+.|.++|......... ......+..++.. +..++.+. ..+.|.++|.. ++....+. .....+++.|
T Consensus 185 d~~~~~I~~~~~~g~~~~~~--~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKV--LEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEE--EECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred ECCCCEEEEEecCCCceEEE--ecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 77788999999976432222 2333445566654 45555554 56799999987 44333321 1245566666
Q ss_pred CC
Q 004969 686 SS 687 (721)
Q Consensus 686 ~~ 687 (721)
++
T Consensus 261 ~~ 262 (267)
T 1npe_A 261 SQ 262 (267)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.54 E-value=3.4e-06 Score=92.04 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=131.7
Q ss_pred CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-C
Q 004969 455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-M 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~ 531 (721)
.+..++|+| ||+++.++.. ++.|.++|+.+++.+.++...+ .. .. .|.....+++.+.||.+.+.++.. +
T Consensus 138 ~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~-~~-~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 138 YPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CY-HI-FPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp CGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EE-EE-EEEETTEEEEEETTSCEEEEECCSSS
T ss_pred CCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cc-ee-ecCCCceeEEECCCCCEEEEECCCCC
Confidence 477899999 8998888764 6899999999999999987532 21 22 356677888999999999999976 3
Q ss_pred CCcccccccCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEc---------cccCCCeEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFA---------DMHKEHINVV 599 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~---------~~h~~~V~sI 599 (721)
+.. .... .... ....++. ...|.+.++.++..+.+|.|.+.|..++.. +..+. +-.......+
T Consensus 211 ~v~-~~~~---~~~~-~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~ 285 (386)
T 3sjl_D 211 TPE-ITHT---EVFH-PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 285 (386)
T ss_dssp CCE-EEEC---CCCS-CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred eEE-Eeec---ceec-cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCccee
Confidence 331 1110 0000 0111221 235544445555567789999999986542 22221 1012334457
Q ss_pred EEcCCCCcEEEEEEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcC-
Q 004969 600 KFSNHSPSIFATSSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLR- 667 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~- 667 (721)
+++|++.+++++-.. .+.|-+.|+.+++........ ....++++++|++ +|+++. .++.|.++|..
T Consensus 286 a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 286 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred eECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 789998555554331 256999999998765444332 2344899999997 677654 58999999987
Q ss_pred CCccc
Q 004969 668 GDPFR 672 (721)
Q Consensus 668 g~~l~ 672 (721)
++.++
T Consensus 364 ~k~~~ 368 (386)
T 3sjl_D 364 GEELR 368 (386)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 44333
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.48 E-value=3.1e-06 Score=93.70 Aligned_cols=207 Identities=8% Similarity=-0.063 Sum_probs=130.3
Q ss_pred eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC-
Q 004969 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD- 519 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~- 519 (721)
+ .++++| ++++++++. .++.|.++|..+++.+..+...+. ......+.++ +++++++.+..
T Consensus 121 P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~ 197 (426)
T 3c75_H 121 P-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFS 197 (426)
T ss_dssp C-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECS
T ss_pred C-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecC
Confidence 5 899999 888777765 467899999999999888764211 1234567887 78888888764
Q ss_pred -CCeEEEEEcCCCCCcccccccCcc----------eeEeccCC----------CeE----------------EEEEecCC
Q 004969 520 -NGSLKLYDIRHMPPSIRGMHYGAG----------TVTFDEFD----------QLT----------------SVHVNSMD 562 (721)
Q Consensus 520 -DGtVrIWDi~~~~~~~~~~~~~~~----------~~~~~~~~----------~V~----------------sv~~sp~~ 562 (721)
++.|.+.|+.+.+.. ..+..... .+.+...+ .+. .+.+.+++
T Consensus 198 ~~~~VsVID~~t~kvv-~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 198 PAPAVGVVDLEGKTFD-RMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp SSCEEEEEETTTTEEE-EEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred CCCeEEEEECCCCeEE-EEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 589999999986542 11111000 00110011 111 12345556
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE--EEcc---------ccCCCeEEEEEcCCCCcEEEEEE---------CCCcEEEEE
Q 004969 563 ELFLASGYSKNIALYDINSGRRLQ--VFAD---------MHKEHINVVKFSNHSPSIFATSS---------FDQDVKLWD 622 (721)
Q Consensus 563 ~~lls~g~Dg~IrlWDl~s~~~v~--~l~~---------~h~~~V~sI~fsPdg~~lLaSgs---------~DgtIrIWD 622 (721)
..++.....+.+.+.|...+.... .+.- ........++++|++.+++++.. .++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 666666667778888876543211 1110 00112223789999855555543 135799999
Q ss_pred CCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969 623 LRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG 668 (721)
Q Consensus 623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g 668 (721)
..+.+....... ...+..+.|+|||+ +++++. .++.|.|+|+..
T Consensus 357 ~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 357 AETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 999865443333 23455899999999 888887 589999999983
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.43 E-value=6.1e-06 Score=91.19 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=125.4
Q ss_pred CCCCCE-EEEEECCCeEEEEECCCC----eEEEEeec------CCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEE
Q 004969 463 PSISCL-MVFGTLDGEIVVVNHENE----NIVSYIPS------FGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKL 525 (721)
Q Consensus 463 P~dg~~-LasGs~DG~I~IWdl~tg----~~i~~l~~------~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrI 525 (721)
+ +.++ ++.|..+++|.|+|+.+. +..+++.. .+ ...-..+... +++ .++++..+ |.|.+
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCG-PDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEE
Confidence 5 4444 555667899999999755 66666630 01 1234456666 566 77777666 78999
Q ss_pred EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-------------------CCCcEEEEECCCCcEEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-------------------YSKNIALYDINSGRRLQ 586 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-------------------~Dg~IrlWDl~s~~~v~ 586 (721)
.|..+.+.. ..+..... ...--+.+.|+|+++.++++. .+.+|.+||+.+++.+.
T Consensus 169 lD~~T~~v~-~~~~~~~~-----~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 169 LDHYSFEPL-GKWEIDRG-----DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp ECTTTCCEE-EECCSBCT-----TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred EECCCCeEE-EEEccCCC-----CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 999986542 11110000 011134688899999888874 36889999999998888
Q ss_pred EEccc-cCCCeEEEEE--cCCCCcEEEEEE-----CCCcEEEEECCCCCceeEEE--ecC-----------------CCC
Q 004969 587 VFADM-HKEHINVVKF--SNHSPSIFATSS-----FDQDVKLWDLRQKPIQPCYT--ASS-----------------SKG 639 (721)
Q Consensus 587 ~l~~~-h~~~V~sI~f--sPdg~~lLaSgs-----~DgtIrIWDlrs~~~~~~~~--~~~-----------------~~~ 639 (721)
++.-+ .......+.| +|++...++++- .+++|.+|....+....... +.. ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 87742 1234456666 999954555555 67788877665443222221 111 122
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 004969 640 NVMVCFSPDDHYLLGKGS-GTSMFVQSLR 667 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~ 667 (721)
+..+.+||||++|+++.. .+.|.+||+.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 336899999999988765 6799999985
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.43 E-value=1.4e-05 Score=83.49 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=121.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CC-CCCCeEEEEEeeCCCCEEEE----EeC---------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FG-AMNSVLGLCWLKKYPSKLIA----GSD--------- 519 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~-H~~~V~sl~fsp~d~~~LaS----gs~--------- 519 (721)
.+..++++| +++++++...++.|.+|+.. |+....... .+ ....+.++++. +++.+.+| |..
T Consensus 87 ~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 87 FTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCC
T ss_pred ccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccc
Confidence 478899999 88877766667899999986 654332211 11 12456788887 67887776 332
Q ss_pred ----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcE--EEE
Q 004969 520 ----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRR--LQV 587 (721)
Q Consensus 520 ----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~--v~~ 587 (721)
.+.|..||..+++... .. .......++|+|++..++++... +.|++||+..+.. ...
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~---------~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 232 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQR---------MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH 232 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEE---------EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred cccCCCeEEEEcCCCCcEEE---------Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence 2567777765544311 11 22345789999999988877664 6899999876541 122
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
+..........+++.++| ++.++. .++ |.+||... +....+.. .....+++|+|+++.|..++.+ .++.++
T Consensus 233 ~~~~~~~~pdgi~~d~~G-~lwv~~-~~g-v~~~~~~g-~~~~~~~~--~~~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGG-WLWSSS-GTG-VCVFDSDG-QLLGHIPT--PGTASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EECCSSSCCCSEEECTTS-CEEECC-SSE-EEEECTTS-CEEEEEEC--SSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred EEECCCCCCCeEEECCCC-CEEEec-CCc-EEEECCCC-CEEEEEEC--CCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 221123455678999999 555443 444 99999854 33333333 3345588999999998888865 444333
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=1e-05 Score=95.07 Aligned_cols=210 Identities=7% Similarity=0.036 Sum_probs=128.5
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCC-----------------------------CCeEEEEEeeCCCCEEEEEeCCCe--
Q 004969 474 LDGEIVVVNHENENIVSYIPSFGAM-----------------------------NSVLGLCWLKKYPSKLIAGSDNGS-- 522 (721)
Q Consensus 474 ~DG~I~IWdl~tg~~i~~l~~~~H~-----------------------------~~V~sl~fsp~d~~~LaSgs~DGt-- 522 (721)
.+|.|+.||..+|+.+..+....+. .....+++. ++.+.++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCcc
Confidence 3789999999999998776531100 011245666 56678888888764
Q ss_pred -----------------EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCC
Q 004969 523 -----------------LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSG 582 (721)
Q Consensus 523 -----------------VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~ 582 (721)
|..||..+++........+.....+....++.......++. .++.++.+|.++++|.++|
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 99999999876432211111000111111222222222443 5777788999999999999
Q ss_pred cEEEEEccccCCC--------------------------------------eEEEEEcCCCCcEEEEEEC----------
Q 004969 583 RRLQVFADMHKEH--------------------------------------INVVKFSNHSPSIFATSSF---------- 614 (721)
Q Consensus 583 ~~v~~l~~~h~~~--------------------------------------V~sI~fsPdg~~lLaSgs~---------- 614 (721)
+.+.......... -..++|+|+. .++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecc
Confidence 9885443111001 1126888887 46665422
Q ss_pred -----------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC
Q 004969 615 -----------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT 659 (721)
Q Consensus 615 -----------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg 659 (721)
+|.|+.||+.+++.. .....+.......+...+..++.|+.||
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~~~~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA--WEVPYVTIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE--EEEEESSSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE--eEccCCCCccCccceECCCEEEEECCCC
Confidence 377999999998653 3333333333335667888999999999
Q ss_pred cEEEEEcC-CCcccccccC----eEEEEECCCC
Q 004969 660 SMFVQSLR-GDPFRDFNMS----ILAAYTRPSS 687 (721)
Q Consensus 660 ~I~VWDl~-g~~l~~~~~~----V~~v~fsP~~ 687 (721)
.++.||.+ |+.+..+... ...+.|.+++
T Consensus 497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 99999987 7665544321 2235556666
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.37 E-value=2e-05 Score=92.42 Aligned_cols=192 Identities=8% Similarity=-0.017 Sum_probs=128.0
Q ss_pred EEEEeCCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969 458 QFEYHPSISCLMVFGTLDG-------------------EIVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP 511 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG-------------------~I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~ 511 (721)
.++++| ++++++.++.++ .|..+|..+|+.+..++...|. ....-+... .++
T Consensus 247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG 324 (677)
T 1kb0_A 247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAG 324 (677)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETT
T ss_pred ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCC
Confidence 578899 778888887664 5999999999999888764442 122222322 355
Q ss_pred ---CEEEEEeCCCeEEEEEcCCCCCcccccccCcc---------eeEe--------------c---cCCCeEEEEEecCC
Q 004969 512 ---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG---------TVTF--------------D---EFDQLTSVHVNSMD 562 (721)
Q Consensus 512 ---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~---------~~~~--------------~---~~~~V~sv~~sp~~ 562 (721)
..++.++.+|.+.++|..+++........... ...+ . ....-..++++|+.
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 67899999999999999998764322111100 0000 0 00001256788888
Q ss_pred CEEEEEeC-------------------------------------------CCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 563 ELFLASGY-------------------------------------------SKNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 563 ~~lls~g~-------------------------------------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
+.+++... .|.|..||+.+++.+..+. +...+...
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g 482 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGG 482 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCc
Confidence 88877543 2789999999999999887 44455555
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
.+...+ .+++.++.||.+++||.++++....+.........-+.|.++|+.+++
T Consensus 483 ~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 483 TLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 566677 578888999999999999997654444433222224778888875543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.36 E-value=2.3e-05 Score=91.89 Aligned_cols=204 Identities=9% Similarity=0.054 Sum_probs=127.6
Q ss_pred CEEEEEEC------CCeEEEEECCCCeEEEEeecCCCC------------------------------CCeEEEEEeeCC
Q 004969 467 CLMVFGTL------DGEIVVVNHENENIVSYIPSFGAM------------------------------NSVLGLCWLKKY 510 (721)
Q Consensus 467 ~~LasGs~------DG~I~IWdl~tg~~i~~l~~~~H~------------------------------~~V~sl~fsp~d 510 (721)
..+++++. +|.|+.||..+|+.+..+...... .....+++. ++
T Consensus 175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~ 253 (677)
T 1kb0_A 175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AE 253 (677)
T ss_dssp TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TT
T ss_pred CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-CC
Confidence 45555543 799999999999998877642211 011245665 56
Q ss_pred CCEEEEEeCCC-------------------eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC---CEEEEE
Q 004969 511 PSKLIAGSDNG-------------------SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLAS 568 (721)
Q Consensus 511 ~~~LaSgs~DG-------------------tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~ 568 (721)
.+.++.++.++ +|..+|..+++........+.....+.......-+....++ ..++.+
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence 77888777664 58999999887643221111100001111112222333356 567788
Q ss_pred eCCCcEEEEECCCCcEEEEEccccCC----------Ce------------------------EEEEEcCCCCcEEEEEEC
Q 004969 569 GYSKNIALYDINSGRRLQVFADMHKE----------HI------------------------NVVKFSNHSPSIFATSSF 614 (721)
Q Consensus 569 g~Dg~IrlWDl~s~~~v~~l~~~h~~----------~V------------------------~sI~fsPdg~~lLaSgs~ 614 (721)
+.+|.++++|..+|+.+..+...... .+ ..++++|++ .++++...
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~ 412 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQ 412 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeCh
Confidence 88999999999999998876521111 11 146889987 46655432
Q ss_pred -------------------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCE
Q 004969 615 -------------------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY 651 (721)
Q Consensus 615 -------------------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~ 651 (721)
.|.|..||+.+++.. .............+..++..
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~~~~~~~~g~~~~~g~~ 490 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA--WSVEHVSPWNGGTLTTAGNV 490 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE--EEEEESSSCCCCEEEETTTE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE--eecCCCCCCcCcceEeCCCE
Confidence 278999999998653 33332222234456678888
Q ss_pred EEEEeCCCcEEEEEcC-CCccccc
Q 004969 652 LLGKGSGTSMFVQSLR-GDPFRDF 674 (721)
Q Consensus 652 Lasgs~Dg~I~VWDl~-g~~l~~~ 674 (721)
++.++.||.+++||.+ |+.+..+
T Consensus 491 v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 491 VFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEECCCCceeeee
Confidence 9999999999999987 6655544
No 228
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=1.2e-07 Score=93.40 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=104.8
Q ss_pred cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
..+.|+|++|+|..+..++.+++|++|+|+ .|.|+.++. .|..||+|+.|.+.+|++..+ .++.++++|++|++
T Consensus 49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSS-HHHHHHHCSEEEEEEEECCCH----HHHHHHHHSSEEEE
T ss_pred CCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccc-hhhcCCcCCEEECcCCcCCcC----CccccCCCCCEEEC
Confidence 467899999999999888899999999999 788998875 677789999999999999876 56888888888865
Q ss_pred ceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCcceeecCCCcccccCCCCCccchhcccccchhhhhhhccCCcCC
Q 004969 206 QNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQL 285 (721)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (721)
..+--
T Consensus 123 ~~N~i--------------------------------------------------------------------------- 127 (198)
T 1ds9_A 123 SNNKI--------------------------------------------------------------------------- 127 (198)
T ss_dssp SEEEC---------------------------------------------------------------------------
T ss_pred CCCcC---------------------------------------------------------------------------
Confidence 54310
Q ss_pred CcccccccccccccccCcccCCchHHHHhhhcccccccccccCCCCccch-------HHHHHHHHHhCccccccCCCCcC
Q 004969 286 DGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFE-------KHYRDYMIASLPKLKFLDNLPIR 358 (721)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pi~~~-------~~yRe~~I~~Lp~Lk~Ldn~~I~ 358 (721)
.+.....++. .-..|+++....+|++.. ..|+..++..+|+|+.+|..++.
T Consensus 128 -------------------~~~~~~~~l~---~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 128 -------------------TNWGEIDKLA---ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp -------------------CCHHHHHHHT---TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred -------------------CchhHHHHHh---cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 0000001111 123467777777888766 78999999999999999999998
Q ss_pred hHHHHhh
Q 004969 359 KVDRERA 365 (721)
Q Consensus 359 k~ere~a 365 (721)
..++..+
T Consensus 186 ~~e~~~a 192 (198)
T 1ds9_A 186 VDEREQA 192 (198)
T ss_dssp TTTTTHH
T ss_pred HHHHHHH
Confidence 8877766
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.31 E-value=9.1e-06 Score=88.24 Aligned_cols=206 Identities=7% Similarity=-0.091 Sum_probs=122.9
Q ss_pred eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC-
Q 004969 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD- 519 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~- 519 (721)
+ .+.++| +++++.++. .++.|.+||..+++.+..+...+. ......++++ +++++++++..
T Consensus 68 P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~ 144 (368)
T 1mda_H 68 S-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFG 144 (368)
T ss_dssp C-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECS
T ss_pred C-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEccC
Confidence 5 799999 887777775 378999999999999999874211 1234578888 78888888764
Q ss_pred -CCeEEE--EEcCCCCCcccc------cc-cCcceeEeccCCCeEEEE--------------------------EecCCC
Q 004969 520 -NGSLKL--YDIRHMPPSIRG------MH-YGAGTVTFDEFDQLTSVH--------------------------VNSMDE 563 (721)
Q Consensus 520 -DGtVrI--WDi~~~~~~~~~------~~-~~~~~~~~~~~~~V~sv~--------------------------~sp~~~ 563 (721)
+..|.+ +|..+ ...+.. .. +..........+.+..+. ..++++
T Consensus 145 ~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~ 223 (368)
T 1mda_H 145 SSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG 223 (368)
T ss_dssp SSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred CCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCC
Confidence 467888 88865 111100 00 000000000000000010 135566
Q ss_pred EEEEEeCCCcEEEEECCCCc--EEEEEcc---------ccCCCeEEEEEcCCCCcEEEEEE---C-----CCcEEEEECC
Q 004969 564 LFLASGYSKNIALYDINSGR--RLQVFAD---------MHKEHINVVKFSNHSPSIFATSS---F-----DQDVKLWDLR 624 (721)
Q Consensus 564 ~lls~g~Dg~IrlWDl~s~~--~v~~l~~---------~h~~~V~sI~fsPdg~~lLaSgs---~-----DgtIrIWDlr 624 (721)
.++..+. +.+.+.|..++. .+..+.- ........++++|++.+++++.. . ++.+.++|+.
T Consensus 224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence 6666666 888899986532 2222210 01111222689999955554444 2 2356699999
Q ss_pred CCCceeEEEecCCCCeEEEEEecCCCE-EEEEe-CCCcEEEEEcCC
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDDHY-LLGKG-SGTSMFVQSLRG 668 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg~~-Lasgs-~Dg~I~VWDl~g 668 (721)
+.+.. ..+.....+..++|+|||++ +++.. .++.|.++|+..
T Consensus 303 t~~vv--~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 303 VGQTS--GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SCCEE--ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CCeEE--EEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 98653 33333334558999999984 55556 589999999983
No 230
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.30 E-value=0.00012 Score=76.99 Aligned_cols=205 Identities=10% Similarity=0.090 Sum_probs=125.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----------------CCCCeEEEEEeeCCCCEEEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-----------------AMNSVLGLCWLKKYPSKLIAG 517 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-----------------H~~~V~sl~fsp~d~~~LaSg 517 (721)
.+.+++|++ +++++.++..++.|..|+..++.......... ....+.++++.+.++ .|+.+
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV 97 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence 367789999 78878888899999999988665432211000 013578899873244 45555
Q ss_pred eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeC-----------------CCcEEEEEC
Q 004969 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGY-----------------SKNIALYDI 579 (721)
Q Consensus 518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~-----------------Dg~IrlWDl 579 (721)
...+.|..+|..++.... +...... ........+++.+ ++..+++... ++.|..||.
T Consensus 98 d~~~~i~~~d~~~g~~~~--~~~~~~~---~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQ--LATSVDG---VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp ETTTEEEEECTTCEECEE--EESEETT---EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred ECCCCEEEEeCCCCEEEE--ecccCCC---CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 555558888876543211 1000000 0112357899988 7766655432 367889998
Q ss_pred CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC---ceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969 580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP---IQPCYTASSSKGNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~---~~~~~~~~~~~~~vsl~fSpdg~~Lasgs 656 (721)
.+++...... .....+.++++|++..++++-...+.|.+|++.... ........ ++-.++++++|.+.++..
T Consensus 173 ~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---gP~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 173 STKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---NPGNIKRNADGHFWVSSS 247 (322)
T ss_dssp TTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---SEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---CCCCeEECCCCCEEEEec
Confidence 7776433322 223456799999983355555667899999987532 11112222 255789999999777665
Q ss_pred C----------CCcEEEEEcCCCcc
Q 004969 657 S----------GTSMFVQSLRGDPF 671 (721)
Q Consensus 657 ~----------Dg~I~VWDl~g~~l 671 (721)
. .+.|..+|..|+.+
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~G~~~ 272 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEFGNIL 272 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTTSCEE
T ss_pred CcccccccCCCccEEEEECCCCCEE
Confidence 4 45677887766544
No 231
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.30 E-value=4e-05 Score=83.57 Aligned_cols=195 Identities=9% Similarity=0.052 Sum_probs=128.9
Q ss_pred EeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEE
Q 004969 461 YHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKL 525 (721)
Q Consensus 461 fsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrI 525 (721)
..| +++.+.+... ++.|.+.|..+++.+..++. +. .+ .++++ ++++++++++ .+++|.+
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~-~P--~va~s-pDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GF-LP--NPVVA-DDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CC-CC--cEEEC-CCCCEEEEEcccccccccCCCCCEEEE
Confidence 356 7777777765 68999999999999998874 32 33 38998 6788776665 4678999
Q ss_pred EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP 603 (721)
||..+.+.. ..+....+. .......-..+.++|++.+++++.. ++.|.++|+.+++.+.++.. .+. ....|
T Consensus 114 iD~~t~~v~-~~I~v~~g~-r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g~---~~~~P 186 (386)
T 3sjl_D 114 FDPVTLLPT-ADIELPDAP-RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PDC---YHIFP 186 (386)
T ss_dssp ECTTTCCEE-EEEEETTCC-CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEE
T ss_pred EECCCCeEE-EEEECCCcc-ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CCc---ceeec
Confidence 999986542 111000000 0000113456889999999998864 68999999999999998863 221 22346
Q ss_pred CCCcEEEEEECCCcEEEEECCC-CCceeEEE--ecCCCCeE--EEEEe-cCCCEEEEEeCCCcEEEEEcCCC
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQ-KPIQPCYT--ASSSKGNV--MVCFS-PDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~--~~~~~~~v--sl~fS-pdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
.+.+.+++.+.||.+-+.++.+ ++...... +......+ ...|. ++|++++ .+.+|.+++.|+.+.
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 5657788889999999999976 44321111 11111222 24665 6776665 455899999998754
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.28 E-value=1.8e-05 Score=92.90 Aligned_cols=192 Identities=15% Similarity=0.045 Sum_probs=125.2
Q ss_pred EEEEeCCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969 458 QFEYHPSISCLMVFGTLDGE-------------------IVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP 511 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~-------------------I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~ 511 (721)
.++++| +.++++.++.++. |..||..+|+.+..++...|. .++...... .++
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G 316 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDG 316 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETT
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCC
Confidence 578899 7788899888764 999999999999888754332 122222221 244
Q ss_pred C---EEEEEeCCCeEEEEEcCCCCCcccccccC---------------------------cceeEec---cCCCeEEEEE
Q 004969 512 S---KLIAGSDNGSLKLYDIRHMPPSIRGMHYG---------------------------AGTVTFD---EFDQLTSVHV 558 (721)
Q Consensus 512 ~---~LaSgs~DGtVrIWDi~~~~~~~~~~~~~---------------------------~~~~~~~---~~~~V~sv~~ 558 (721)
. .++.++.+|.++++|..+++......... .....+. ....-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 3 78899999999999999987642111100 0000000 0001223678
Q ss_pred ecCCCEEEEEeC---------------------------------------------CCcEEEEECCCCcEEEEEccccC
Q 004969 559 NSMDELFLASGY---------------------------------------------SKNIALYDINSGRRLQVFADMHK 593 (721)
Q Consensus 559 sp~~~~lls~g~---------------------------------------------Dg~IrlWDl~s~~~v~~l~~~h~ 593 (721)
+|+.+.+++... +|.|+.||+.+|+.+..+.. .
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~ 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--V 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--S
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--C
Confidence 888787776532 37799999999999998873 3
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 594 ~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
..+..-.+...+ .+++.|+.||.++.||.++++..-.+.........-+.|..+|+..++
T Consensus 475 ~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 333434555566 588889999999999999997644444332222224778888875443
No 233
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.26 E-value=4.8e-07 Score=84.46 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=19.1
Q ss_pred cccccCCCCccchHHHHHHHHHhCccccccC
Q 004969 323 KYISCHASPICFEKHYRDYMIASLPKLKFLD 353 (721)
Q Consensus 323 ~~~~~~~~Pi~~~~~yRe~~I~~Lp~Lk~Ld 353 (721)
+++....++++....|+...+..+|+|+.++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 4444555566656666666667777776665
No 234
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.25 E-value=0.00025 Score=72.96 Aligned_cols=183 Identities=15% Similarity=0.108 Sum_probs=123.3
Q ss_pred eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
...+.|+ ++.++.+.+.+| .|+++|+++|+.+..+.... ..---+++.. .+...++.-.++.+.+||..+.+.
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 5678887 357777777776 99999999999999887532 1122345543 334444445689999999998664
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lL 609 (721)
. .++.....=..++ +++..++.+..++.|.++|..+.+.+..+.-. .. ..++.+.|. +| .++
T Consensus 120 ~----------~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~ly 185 (262)
T 3nol_A 120 V----------RSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIF 185 (262)
T ss_dssp E----------EEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred E----------EEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEE
Confidence 2 1121111112333 47777777766788999999999988876631 11 345567776 66 677
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecCC-----------CCeEEEEEecCCCEEEEEeC
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASSS-----------KGNVMVCFSPDDHYLLGKGS 657 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~-----------~~~vsl~fSpdg~~Lasgs~ 657 (721)
+..-.+..|.+.|.++++......+.+- .....++|+|+++.|++.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6666788999999999987666555311 12248999998888777763
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.25 E-value=4.5e-05 Score=89.37 Aligned_cols=195 Identities=11% Similarity=0.087 Sum_probs=122.0
Q ss_pred EEEEEeCCCCCEEEEEECCC-------------eEEEEECCCCeE--EEEeecCC-CCCCeEEEEEeeCCCCEEEEEeC-
Q 004969 457 RQFEYHPSISCLMVFGTLDG-------------EIVVVNHENENI--VSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSD- 519 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG-------------~I~IWdl~tg~~--i~~l~~~~-H~~~V~sl~fsp~d~~~LaSgs~- 519 (721)
..++|+ |++.|+.++.+. .|++|++.++.. ...+.... |...+.++.|+ +++++|+....
T Consensus 178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~ 254 (693)
T 3iuj_A 178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAAN 254 (693)
T ss_dssp CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEES
T ss_pred ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEcc
Confidence 457888 677788777774 399999987642 33444334 55567889998 67877644332
Q ss_pred ---CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C---CcEEEEECCCCcE--EEEEcc
Q 004969 520 ---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S---KNIALYDINSGRR--LQVFAD 590 (721)
Q Consensus 520 ---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D---g~IrlWDl~s~~~--v~~l~~ 590 (721)
++.|.+||+.++......+ ..+....... ++++++.++..+. + +.|..+|+.++.. .+.+..
T Consensus 255 ~~~~~~i~~~d~~~~~~~~~~l--------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 255 STSGNRLYVKDLSQENAPLLTV--------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp SSSCCEEEEEETTSTTCCCEEE--------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred CCCCcEEEEEECCCCCCceEEE--------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 2589999998754211111 1122223333 5567777766653 2 6799999987654 344554
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC----CcEEE
Q 004969 591 MHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG----TSMFV 663 (721)
Q Consensus 591 ~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D----g~I~V 663 (721)
|...+. .|++++..++++...++ .|++||+..+.. ....+.. .+.+ .+.+++++..++....+ +.++.
T Consensus 326 -~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 326 -ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp -CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred -CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 555555 88998854555555565 688999886532 2222332 2333 67788888877665544 78999
Q ss_pred EEcCC
Q 004969 664 QSLRG 668 (721)
Q Consensus 664 WDl~g 668 (721)
||+.+
T Consensus 401 ~d~~~ 405 (693)
T 3iuj_A 401 FEPKS 405 (693)
T ss_dssp ECTTT
T ss_pred EECCC
Confidence 99864
No 236
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00031 Score=72.18 Aligned_cols=206 Identities=9% Similarity=0.086 Sum_probs=135.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+..++|+|.++.++++...++.|...|.. |+.+..++..+. ...-+|++. .++.++++.-.++.+.++++......
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCee
Confidence 488999999555667778889999999998 888888875443 457788887 56666666667789999988764421
Q ss_pred ccccccCc-ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCcEEEEEc------cccCCCeEEEEEcCC
Q 004969 535 IRGMHYGA-GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFA------DMHKEHINVVKFSNH 604 (721)
Q Consensus 535 ~~~~~~~~-~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~~~v~~l~------~~h~~~V~sI~fsPd 604 (721)
....... .............++|+|.++.++++.......+|.+. ....+..+. ..+...+.+++++|.
T Consensus 105 -~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 105 -KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp -EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred -eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 1000000 00011223447899999999888887754444444443 111222221 113456789999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
.+++++.....+.+.++|.... ......+... ..+-.++|.++|+..+ .+.-+.++++.-
T Consensus 184 tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 8778888888889999997754 5555666532 2344799999998554 576777776643
No 237
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.24 E-value=4.1e-05 Score=84.62 Aligned_cols=193 Identities=11% Similarity=0.039 Sum_probs=129.5
Q ss_pred CCCEEEEEEC-C----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcC
Q 004969 465 ISCLMVFGTL-D----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIR 529 (721)
Q Consensus 465 dg~~LasGs~-D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~ 529 (721)
++.++++... + +.|.++|..+++.+..++. +. .+ .+.++ +++++++++. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~-~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GF-LP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CC-CC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 5565555544 2 6999999999999999885 32 34 89998 6777776665 46799999999
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
+.+..-....+... .+........+.++|++.+++++.. ++.|.++|+.+++.+..+.- .+. ....|++..
T Consensus 158 t~~vv~~I~v~g~~--r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~---~~~~p~g~~ 230 (426)
T 3c75_H 158 TFLPIADIELPDAP--RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDC---YHIFPASPT 230 (426)
T ss_dssp TCCEEEEEEETTCC--CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEEEETT
T ss_pred CCcEEEEEECCCcc--ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCc---eeeccCCCc
Confidence 86542111000000 0000122356789999999999874 57899999999999988873 121 345566656
Q ss_pred EEEEEECCCcEEEEECCCCCceeEE--EecCCCCeE--EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCY--TASSSKGNV--MVCFSPDDHYLLGKGSGTSMFVQSLRGD 669 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~--~~~~~~~~v--sl~fSpdg~~Lasgs~Dg~I~VWDl~g~ 669 (721)
.+++.+.||.+.+.+..+++..... .+......+ .+.|++++..++..+..+.+++.|+.+.
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 7788888999888888555432111 111112222 4678999988877788899999998643
No 238
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.24 E-value=4e-07 Score=86.81 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=47.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|+++.+...-+......=-.-+.|+|++|++..+..++.+++|++|+|. .|.|+..-...|..||+|+.|.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEec
Confidence 45666666655443111111111112334555555555555555555555555555 44555543444555555555555
Q ss_pred ccccchhhhHHHHHhhcCCcchhh
Q 004969 180 CETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.+|++..+ ..+.++.+|++|++|
T Consensus 103 s~N~l~~~-~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 103 SGNKLKDI-STLEPLKKLECLKSL 125 (168)
T ss_dssp BSSSCCSS-GGGGGGSSCSCCCEE
T ss_pred cCCccCcc-hhHHHHhcCCCCCEE
Confidence 55555443 112344444444444
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.16 E-value=0.00014 Score=80.34 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=123.7
Q ss_pred CeEEEEEeCCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEe---------
Q 004969 455 RPRQFEYHPSISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGS--------- 518 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs--------- 518 (721)
++..+...| ++ ++++...+ |.|.++|.++++.+..+...... .--..+-|+ ++.+.+++..
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTT
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCcccccc
Confidence 467788889 77 77776555 78999999999999998743222 223457777 6778888874
Q ss_pred ----------CCCeEEEEEcCCCCCcccccccCcceeEeccC-CCeEEEEE--ecCCCEEEEEeC------CCcEEEEEC
Q 004969 519 ----------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHV--NSMDELFLASGY------SKNIALYDI 579 (721)
Q Consensus 519 ----------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~--sp~~~~lls~g~------Dg~IrlWDl 579 (721)
.+.+|.+||+.+++. ...+ ..... .....+.| +|++.+.+++.. +++|.+|..
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI-------~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKR-IHSL-------TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEE-EEEE-------ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccchhhhhhccCCEEEEEECCCCcE-eeEE-------ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 368999999997532 1111 11100 11244545 899998888774 567877766
Q ss_pred CCCcE--EEEE--ccc---------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC-CceeEEEecCC--
Q 004969 580 NSGRR--LQVF--ADM---------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-PIQPCYTASSS-- 637 (721)
Q Consensus 580 ~s~~~--v~~l--~~~---------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~-~~~~~~~~~~~-- 637 (721)
..++. .+.+ ... -......|.++|||..+.++.-..+.|.+||+... ....+..+...
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence 54432 1111 100 02457789999999555555566889999998632 22333332221
Q ss_pred ---------C----CeEEEEEecCCCEEEEEe
Q 004969 638 ---------K----GNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 638 ---------~----~~vsl~fSpdg~~Lasgs 656 (721)
. ++..+.++|||++|+++.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1 345789999999999887
No 240
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.16 E-value=0.00076 Score=70.32 Aligned_cols=216 Identities=11% Similarity=0.026 Sum_probs=130.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC-eEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG-SLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG-tVrIWDi~~~~ 532 (721)
.+..++|+| ++.++++-..++.|..||... .....+.. ...+.++++. ++++++++... ++ .|..+|..+++
T Consensus 33 ~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 33 FLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCe
Confidence 378899999 888877777889999999875 44444432 2468899997 56776555433 22 46666766544
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE-EEEEcc--------ccCCCeEEEEEc
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR-LQVFAD--------MHKEHINVVKFS 602 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~-v~~l~~--------~h~~~V~sI~fs 602 (721)
... + ...........++..+ +..++++. .++.|..+|..+++. +....+ ..-...+.+ +
T Consensus 107 ~~~--~------~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 107 VET--L------LTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEE--E------EECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEE--E------EeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 311 0 0011111123444433 44555554 578999999876532 221110 011234556 7
Q ss_pred CCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc--ccccc---c
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP--FRDFN---M 676 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l~~~~---~ 676 (721)
|++..++++-...+.|..||+.. +.......+.....+-.++++++|+++++....+.|.+++..|.. +.... .
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI 255 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC
Confidence 88755666777788999999875 322111111111122358999999988877778899999987654 21222 3
Q ss_pred CeEEEEEC---CCC
Q 004969 677 SILAAYTR---PSS 687 (721)
Q Consensus 677 ~V~~v~fs---P~~ 687 (721)
.+.+++|. |++
T Consensus 256 ~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 256 GSTAVAFGQTEGDC 269 (306)
T ss_dssp TEEEEEECCSTTTT
T ss_pred CceEEEEecccCCC
Confidence 57889998 886
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.16 E-value=0.00021 Score=73.54 Aligned_cols=181 Identities=13% Similarity=0.025 Sum_probs=123.0
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~ 535 (721)
...+.|+. +.++++.+.+|.|+++|+++|+.+..+ ... ..---+++. ..+...++.-.++.+.+||..+.+..
T Consensus 57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~- 129 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE- 129 (268)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE-
T ss_pred cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE-
Confidence 56788874 577888888999999999999988777 422 222234554 34455556667899999999986542
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEEEE
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lLaS 611 (721)
.++.....-..++ +++..++.+..++.|+++|..+.+.+..+.-. +. ..++.+.|. +| .+++.
T Consensus 130 ---------~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyan 196 (268)
T 3nok_A 130 ---------RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYAN 196 (268)
T ss_dssp ---------EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred ---------EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEE
Confidence 1111111113444 46788888877899999999999988877621 11 245677777 66 67766
Q ss_pred EECCCcEEEEECCCCCceeEEEecC-----------C-CCeEEEEEecCCCEEEEEe
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASS-----------S-KGNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~-----------~-~~~vsl~fSpdg~~Lasgs 656 (721)
.-.+..|.+.|.++++......+.+ . .....++|+|+++.|+..+
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6678899999999997765555431 1 1223899999776555554
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.14 E-value=0.00075 Score=68.69 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=122.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
....+.|++ +.++.+.+.+| .|+++|+++|+.+..+....+. ---+++.. .+...+..-.++.+.+||..+.+
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 366788987 45666666654 9999999999999988753321 22344543 34455555678999999999855
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSI 608 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~l 608 (721)
.. .++.....=..++ +++..++++..++.|.++|..+.+.+..+.-. +. ..++.+.+. +| .+
T Consensus 97 ~~----------~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~l 162 (243)
T 3mbr_X 97 PR----------ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-EL 162 (243)
T ss_dssp EE----------EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred EE----------EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EE
Confidence 42 1222111123444 46777777777889999999999888877631 11 345667765 55 66
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecC----------CC--CeEEEEEecCCCEEEEEe
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASS----------SK--GNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~----------~~--~~vsl~fSpdg~~Lasgs 656 (721)
++..-.+..|.+.|.++++......+.+ .. ....++|+|+++.|+..+
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6666578899999999997765555431 11 223899999877776666
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.13 E-value=0.00025 Score=73.33 Aligned_cols=194 Identities=7% Similarity=-0.010 Sum_probs=119.8
Q ss_pred eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCE
Q 004969 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564 (721)
Q Consensus 487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~--DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ 564 (721)
+.+.+++. +......++.|+ +++.++++.+. ++.|+++|..+++.... +..........+++ .++.
T Consensus 10 ~vv~~~p~-~~~~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------i~l~~~~fgeGi~~--~g~~ 77 (266)
T 2iwa_A 10 EVLNEFPH-DPYAFTQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENI--------HKMDDSYFGEGLTL--LNEK 77 (266)
T ss_dssp EEEEEEEC-CTTCCEEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEE--------EECCTTCCEEEEEE--ETTE
T ss_pred eEEEEEEC-CCCCCcccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEE--------EecCCCcceEEEEE--eCCE
Confidence 45566642 222346899998 45555555443 68999999999764211 11111111234555 4567
Q ss_pred EEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC----C
Q 004969 565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK----G 639 (721)
Q Consensus 565 lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~----~ 639 (721)
++.+. .++.+.++|..+.+.+.++..+ ... ...++++|..++++ ..++.|.++|..+.+........... .
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 77666 4789999999999999988742 121 23355677555554 56889999999987654443332221 2
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc----------------cCeEEEEECCCCCcccccccEEEEecC
Q 004969 640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN----------------MSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~----------------~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
...+.|. +|...+....++.|.+-|.. ++...... .....++|+|+++ .+++++..
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~------~lfVTgk~ 226 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK------RIFVTGKL 226 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT------EEEEEETT
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC------EEEEECCC
Confidence 3367777 77555555567899999987 33322221 2458899999985 45566554
Q ss_pred C
Q 004969 703 C 703 (721)
Q Consensus 703 ~ 703 (721)
.
T Consensus 227 ~ 227 (266)
T 2iwa_A 227 W 227 (266)
T ss_dssp C
T ss_pred C
Confidence 4
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.09 E-value=0.00024 Score=72.99 Aligned_cols=190 Identities=9% Similarity=0.007 Sum_probs=117.0
Q ss_pred EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE
Q 004969 488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565 (721)
Q Consensus 488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l 565 (721)
.+.+++. ....-..++.|+ ++.++.+++.+| .|+++|+.+++.... ..-........+.+.++.+
T Consensus 33 vv~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~FgeGit~~g~~l 99 (262)
T 3nol_A 33 IVHSYPH-DTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFGEGISDWKDKI 99 (262)
T ss_dssp EEEEEEC-CTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCEEEEEEETTEE
T ss_pred EEEEecC-CCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccceeEEEEeCCEE
Confidence 4556642 333446889996 567777888776 999999999765211 1111222232223356677
Q ss_pred EEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe----
Q 004969 566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN---- 640 (721)
Q Consensus 566 ls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~---- 640 (721)
+... .++.+.+||..+.+.+.++.. ...-..++ +++..++++ ..++.|.++|..+.+.............
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~--~~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNY--DGEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEEC--SSCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEEC--CCCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 7666 488999999999999999984 22222333 566444444 4578899999998765544444322222
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc---------------ccCeEEEEECCCCCcccccccEEEEecC
Q 004969 641 VMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF---------------NMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 641 vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~---------------~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
..+.|. +|+..+..-.++.|.+.|.+ |+..... ....+.++|+|+.+ .++++|-.
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~------~lfVTGK~ 245 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH------RLFVTGKL 245 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT------EEEEEETT
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC------EEEEECCC
Confidence 246776 67655555567788888876 3321111 12568899999874 55666543
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.09 E-value=0.00011 Score=83.87 Aligned_cols=191 Identities=6% Similarity=0.047 Sum_probs=131.0
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEe------------------CCCeEE
Q 004969 465 ISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGS------------------DNGSLK 524 (721)
Q Consensus 465 dg~~LasGs-~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs------------------~DGtVr 524 (721)
||+++.... .+++|.+.|+.+.++...+.. .....+.++++.. +++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC-CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 556666655 466899999999998885543 2234588888854 6788888874 356899
Q ss_pred EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--------------------------------
Q 004969 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-------------------------------- 572 (721)
Q Consensus 525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-------------------------------- 572 (721)
+.|..+.+...+. ... ..-..++++|++.++++++.+.
T Consensus 179 vID~~t~~v~~qI--------~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 179 AVDADKWEVAWQV--------LVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEETTTTEEEEEE--------EES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEECCCCeEEEEE--------EeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 9999875432111 110 1224566777888877777432
Q ss_pred ------cEEEEECCC--CcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----------eeEEE
Q 004969 573 ------NIALYDINS--GRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----------QPCYT 633 (721)
Q Consensus 573 ------~IrlWDl~s--~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----------~~~~~ 633 (721)
.|.+.|.++ ++. +..+. -.....++.++|||..+++++..+.+|.++|+.+.+. .....
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 478888887 544 45554 3345678999999966777777899999999986420 12345
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 634 ASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 634 ~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
.....++..++|+|+|...++.-.|+.|.+|++..
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 56667788899999994334556789999999863
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.09 E-value=0.00042 Score=71.37 Aligned_cols=189 Identities=7% Similarity=-0.044 Sum_probs=120.0
Q ss_pred eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE
Q 004969 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL 566 (721)
Q Consensus 487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll 566 (721)
+.+.+++. ....-..++.|. ++.+.++.+.+|.|+++|+.+++..... +....--..+++ .++.++
T Consensus 44 ~Vv~~~ph-d~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------l~~~~FgeGit~--~g~~Ly 109 (268)
T 3nok_A 44 HIIREYPH-ATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME---------RLGNIFAEGLAS--DGERLY 109 (268)
T ss_dssp EEEEEEEC-CTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE---------ECTTCCEEEEEE--CSSCEE
T ss_pred EEEEEEcC-CCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE---------CCCCcceeEEEE--eCCEEE
Confidence 34555542 333456899986 5678888889999999999998763221 111111123444 555665
Q ss_pred EEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe----E
Q 004969 567 ASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN----V 641 (721)
Q Consensus 567 s~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~----v 641 (721)
... .++.+.+||..+.+.+.++.. ...-..++ +++ ..++.+..++.|.++|..+.+............. .
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRERTTRY--SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EEESSSCEEEEEETTTTEEEEEEEC--SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEccCCEEEEEECCcCcEEEEEeC--CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 555 589999999999999999984 22223444 456 4555555689999999999766544444332222 2
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----------------ccCeEEEEECCCCCcccccccEEEEec
Q 004969 642 MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----------------NMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 642 sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----------------~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
.+.|. +|+..+....++.|.+.|.+ |+..... ....+.++++|+++ .++++|-
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~------rlfVTGK 254 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG------RIFMTGK 254 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC------CEEEEET
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC------EEEEeCC
Confidence 46676 77655544467788888876 3321111 13568899999874 6666663
No 247
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=3.2e-06 Score=85.20 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=72.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|+++.+..-. .+.+..=-.-+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhHhCcchhhCeE
Confidence 67888888887665311 011111124567888888888874 36788888888888 678888888888888888888
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.|.+|++..+ -.++.++++|+.|.++
T Consensus 118 ~Ls~N~l~~l---p~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 118 FMCCNKLTEL---PRGIERLTHLTHLALD 143 (229)
T ss_dssp ECCSSCCCSC---CTTGGGCTTCSEEECC
T ss_pred eccCCccccc---CcccccCCCCCEEECC
Confidence 8888888754 2456777888777543
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.01 E-value=0.00048 Score=73.50 Aligned_cols=187 Identities=10% Similarity=0.013 Sum_probs=117.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-------CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA-------MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-------~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
.+..+++++.+|.|..+|..+|+.+........ ...+.+.-. ..+..++.++.++.|..+|..+++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 357788888899999999999998877664221 122322211 24577888999999999999987653221
Q ss_pred cccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe------EEEEEcCCCCcEEE
Q 004969 538 MHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI------NVVKFSNHSPSIFA 610 (721)
Q Consensus 538 ~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V------~sI~fsPdg~~lLa 610 (721)
.. ...+ ..... .++.+++++.++.+..+|..+|+.+..+.. . ..+ ...... ++ .++
T Consensus 130 ~~----------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~-~~~~~~~~~~~~~~~-~~--~v~ 192 (376)
T 3q7m_A 130 KV----------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-D-MPSLSLRGESAPTTA-FG--AAV 192 (376)
T ss_dssp EC----------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-C-C-----CCCCCCEEE-TT--EEE
T ss_pred eC----------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-C-CCceeecCCCCcEEE-CC--EEE
Confidence 11 1111 11112 256888888899999999999999988763 1 111 122222 33 677
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeE------EEEEec--CCCEEEEEeCCCcEEEEEcC-CCc
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV------MVCFSP--DDHYLLGKGSGTSMFVQSLR-GDP 670 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v------sl~fSp--dg~~Lasgs~Dg~I~VWDl~-g~~ 670 (721)
.++.++.+..+|..+++..-........+.. .+.-.| .+..++.++.++.+..+|.+ |+.
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence 7888999999999988654333322111100 000111 35667777788899999986 443
No 249
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.99 E-value=0.00023 Score=76.10 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=116.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC--------eE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS--------VL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~--------V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
+..++.|+.+|.|..+|..+|+.+........... +. .... .+..++.++.+|.+..+|..+++....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEee
Confidence 35788888999999999999998877653211100 10 1111 246788888899999999988765322
Q ss_pred ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
.. ......+.. .++.+++++.++.+..+|..+++.+..........+...... + ..++.++.+|
T Consensus 265 ~~-----------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g 328 (376)
T 3q7m_A 265 RE-----------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEG 328 (376)
T ss_dssp EC-----------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTS
T ss_pred cc-----------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 11 112233333 578888888999999999999999887762122223333332 3 4788888999
Q ss_pred cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS 665 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD 665 (721)
.+..+|.++++......... .... .... .+..|+.++.+|.++.|+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~-~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDS-SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCT-TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCC-CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99999999987644444322 1221 2222 256777888899999887
No 250
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.98 E-value=0.00017 Score=78.20 Aligned_cols=98 Identities=11% Similarity=-0.031 Sum_probs=67.7
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
+|.++|..+++.+.++.. +. .+ .+.++ +++++++++. .+++|.+||..+.+.. ..+...... .
T Consensus 47 ~vsvID~~t~~v~~~i~v-G~-~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-~~I~v~~~~-~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-AF-LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-ADIELPDAP-R 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CT-TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-EEEEETTSC-S
T ss_pred eEEEEECCCCeEEEEEeC-CC-CC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-EEEECCCcc-c
Confidence 889999999999999885 33 34 79998 6777777775 4789999999997652 111100000 0
Q ss_pred eccCCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASGY--SKNIAL--YDINS 581 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g~--Dg~Irl--WDl~s 581 (721)
+........+.++|++.+++++.. +..+.+ +|..+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 000012357889999999998874 467888 99876
No 251
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.97 E-value=0.0018 Score=70.33 Aligned_cols=202 Identities=8% Similarity=0.088 Sum_probs=128.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+..++|++.++.++++-...+.|..++...+.....+. .......++++.+..+.+.++-...+.|.+.++......
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 478999998566666666678899999998665444333 222345667776445566666667788888888754321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
............++++|.++.++.+.. . +.|..+++........... .-...+.|+++|++.+++++-
T Consensus 195 ---------~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 195 ---------VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp ---------EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEE
T ss_pred ---------EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEE
Confidence 111112234688999988888777764 3 6788888874333322222 345678999998775677777
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP 670 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~ 670 (721)
+..+.|..+|+...... .....+...+..+++ ..+..+++-...+.|..++ ..|..
T Consensus 265 ~~~~~I~~~d~dG~~~~-~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 265 AKHHVIERANLDGSHRK-AVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TTTTEEEEECTTSCSCE-EEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEeCCCCeeE-EEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 77788999998754322 222223334557777 3445555555677888888 44544
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.97 E-value=0.0015 Score=66.35 Aligned_cols=191 Identities=8% Similarity=0.026 Sum_probs=116.7
Q ss_pred eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCE
Q 004969 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564 (721)
Q Consensus 487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ 564 (721)
+.+..++. ....-..++.|. ++.++.+.+.+| .|+.+|+.+++... ...-........+...++.
T Consensus 10 ~v~~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~----------~~~l~~~~fgeGi~~~~~~ 76 (243)
T 3mbr_X 10 RVVKRYPH-DTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQ----------RAEVPPPYFGAGIVAWRDR 76 (243)
T ss_dssp EEEEEEEC-CTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEE----------EEECCTTCCEEEEEEETTE
T ss_pred EEEEEcCC-CCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEE----------EEeCCCCcceeEEEEeCCE
Confidence 34556642 334567799997 356667777754 99999999976521 1111122222222234566
Q ss_pred EEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe---
Q 004969 565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--- 640 (721)
Q Consensus 565 lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~--- 640 (721)
++... .++.+.+||..+.+.+.++.. ...-..++ +++..++++ ..++.|.++|..+.+.........+...
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~--~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRY--PGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEEC--SSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeC--CCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 66665 589999999999999999984 22223444 466445554 5588999999998765544443322222
Q ss_pred -EEEEEecCCCEEEEEeCCCcEEEEEcC-CCccc----------------ccccCeEEEEECCCCCcccccccEEEEecC
Q 004969 641 -VMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR----------------DFNMSILAAYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 641 -vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~----------------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~ 702 (721)
..+.|. +|+..+....++.|.+.|.+ |+... .-....+.++++|.++ .++++|-.
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~------~lfVTGK~ 224 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD------RLFVTGKR 224 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT------EEEEEETT
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC------EEEEECCC
Confidence 245555 66655544467788888775 32211 1123568899999874 66666644
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.95 E-value=0.0045 Score=65.03 Aligned_cols=203 Identities=9% Similarity=0.049 Sum_probs=126.1
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+..++|++.++.++++-...+.|..+++.+ ......+. .......++++.+.+++..++-...+.|.+.+...
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 4789999995555666666679999999875 22222222 22234567887634555556666788999999875
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.... ............++++|.++.++.+... +.|..+++. |+....+....-...+.++++|++.++
T Consensus 109 ~~~~---------~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 109 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SSEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred CceE---------EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEE
Confidence 3221 1111122346889999888877777643 678888886 444444432134568899999987566
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP 670 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~ 670 (721)
+++-+..+.|..+|+.......+.... .-..+..+++. .+..+++-...+.|..++.. |..
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 666667789999999864433333321 12345577775 35555555567788888863 443
No 254
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.93 E-value=0.0032 Score=67.33 Aligned_cols=202 Identities=9% Similarity=0.109 Sum_probs=128.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+..++|++.++.++.+-...+.|..++...+.....+. .......++++.+..+.+.++-...+.|.+.++......
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 478999998566666666678899999998665444333 222345677776445566666667789999998764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. ...........++++|.++.++.+.. . +.|..+++... ....+....-...+.++++|++..+.++-
T Consensus 152 ~---------l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 152 V---------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp E---------EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred E---------EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 1 11112234588999988887777664 4 77888888743 33333221345678999998775667776
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP 670 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~ 670 (721)
...+.|..+|+...... .........+..+++. .+..+++-...+.|..++ ..|..
T Consensus 222 ~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 222 AKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 77788999998764322 2222223345567773 445555555677888887 44543
No 255
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.92 E-value=1.3e-06 Score=94.69 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc
Q 004969 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (721)
Q Consensus 510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~ 589 (721)
++..+++++.||.|..||..+++.... +.. ..+.+..+..++..+++++.|+.|+.||..+|+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------LKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE----------EEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE----------ecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 467899999999999999999876322 111 233333333456667777789999999999998877765
Q ss_pred cccC-CCeE-EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 590 DMHK-EHIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 590 ~~h~-~~V~-sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
. +. ..+. +..+. .+ ..+++|+.|+.|+.||.++++... ....+. ...++|++..+++++.++.|+.||.+
T Consensus 77 ~-~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w--~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 77 F-TIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQ--TLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp C-CHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSS
T ss_pred c-cCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEE--EecCCC---cccccccCCEEEEEecCCEEEEEECC
Confidence 3 21 1110 01111 23 367788889999999999986533 332222 23556788999999999999999986
Q ss_pred -CCc
Q 004969 668 -GDP 670 (721)
Q Consensus 668 -g~~ 670 (721)
|+.
T Consensus 149 tG~~ 152 (369)
T 2hz6_A 149 TREL 152 (369)
T ss_dssp SSSC
T ss_pred CCCE
Confidence 443
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.91 E-value=0.0022 Score=65.00 Aligned_cols=180 Identities=8% Similarity=0.001 Sum_probs=110.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHM 531 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~ 531 (721)
.+..++++|..+.++++-...+.|.+++........... .......++++. +++..|+.+.. .+.|..+++...
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--TGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--CCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEEecCCC
Confidence 588999999445555565667899999987443322222 122457899998 44444444443 468888888653
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.... ...........++++++++.++.+.. .+.|..+|.........+. .......++.. +..+++
T Consensus 157 ~~~~---------~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d--~~~lyv 223 (267)
T 1npe_A 157 NRRI---------LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY--GKNLYY 223 (267)
T ss_dssp CCEE---------EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE--TTEEEE
T ss_pred CcEE---------EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe--CCEEEE
Confidence 2210 10011234688999998887777764 6889999998544333333 22344667664 335666
Q ss_pred EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~ 650 (721)
+....+.|..+|..+++............+..+++.|++.
T Consensus 224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6667789999999987543333222112345678888764
No 257
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.88 E-value=5.6e-06 Score=81.13 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred cceEeeccCCchhh-HHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 101 KLRVVDLHDSSFGK-DFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 101 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
+|+.++|+++.+.. +.+..+ -.-+.|+|++|.+..+..++.+++|++|+|. .+.|+......|..||+|+.|.|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l----~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGC----TTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChHHHhcC----CCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEe
Confidence 46666666654431 112222 1346677777777777777777888888887 67777755566777888888888
Q ss_pred ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++... ...++.++++|++|.+..|
T Consensus 120 s~n~i~~~--~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 120 SHSAHDDS--ILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CSSBCBGG--GHHHHTTCSSCCEEECCSC
T ss_pred cCCccCcH--hHHHHhhCCCCCEEEccCC
Confidence 88877651 2366777788887776654
No 258
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.87 E-value=6.7e-06 Score=79.06 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=93.2
Q ss_pred CCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--ccccc
Q 004969 69 GATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEF 146 (721)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 146 (721)
+.+.+..+|+.+-.-..+.+ +...-.+|+.++|.++.+..- +-...--.-+.|+|++|+|..+. +++.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~------~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCCceEEEeeCCCCchhHH------hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 44566677774322222211 222234899999999887652 22222235788999999999885 35889
Q ss_pred ceeeEEecccccccccccc-cccccccccchhccccccchhhhHH-HHHhhcCCcchhhcccee
Q 004969 147 KRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWTT-IAALSKLPSLAELRFQNW 208 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 208 (721)
++|++|+|+ +|.|+.++. +.|..+|+|+.|++.+|.+..+=.. ..++.++|+|+.|.+..+
T Consensus 88 ~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999 889999987 6899999999999999999865221 235888999999976543
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.87 E-value=0.00092 Score=78.10 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=120.4
Q ss_pred EEEEeCCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969 458 QFEYHPSISCLMVFGTLDGE-------------------IVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP 511 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~-------------------I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~ 511 (721)
.+++.| ...+++.++.++. |.-+|..+|+.+..++...|. .+....... .++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G 311 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDG 311 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETT
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCC
Confidence 468888 6778888887764 999999999999888754343 222222222 244
Q ss_pred C---EEEEEeCCCeEEEEEcCCCCCcccccccC----------c-cee-------------EeccC---CCeEEEEEecC
Q 004969 512 S---KLIAGSDNGSLKLYDIRHMPPSIRGMHYG----------A-GTV-------------TFDEF---DQLTSVHVNSM 561 (721)
Q Consensus 512 ~---~LaSgs~DGtVrIWDi~~~~~~~~~~~~~----------~-~~~-------------~~~~~---~~V~sv~~sp~ 561 (721)
+ .++.++.+|.+.++|..+++......... . ..+ .+... ..-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 3 68899999999999999987642111000 0 000 00000 00112567777
Q ss_pred CCEEEEEe------------------------------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969 562 DELFLASG------------------------------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (721)
Q Consensus 562 ~~~lls~g------------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg 605 (721)
.+.+++.. .+|.|..||+.+++.+..... ........+...+
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~g 469 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAG 469 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCC
Confidence 66665421 237899999999999988773 3333333344455
Q ss_pred CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG 656 (721)
Q Consensus 606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs 656 (721)
.++++++.|+.++.||.++++..-.+.........-+.+..+|+ |++.++
T Consensus 470 -g~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 470 -NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp -TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred -CEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 58888999999999999999764444443211111355666776 454443
No 260
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.86 E-value=6e-06 Score=85.11 Aligned_cols=103 Identities=15% Similarity=0.301 Sum_probs=79.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|+.+.+.. +..+.. -.=+.|+|++|+|..+.-++.+.+|++|+|+ .|.|+.++ .|..||+|+.|.|
T Consensus 85 ~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIR-NNKLKSIV--MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECT-TSCCCBCG--GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCChhhcCcccccEEECC-CCcCCCCh--HHccCCCCCEEEC
Confidence 578888888876654 222222 4556788888888888888888888888888 77888884 6888888888888
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccceeeecCC
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD 213 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (721)
.+|++..+ .++.++++|+.|.+..+.+...
T Consensus 158 ~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 88888877 7788888888888887766543
No 261
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.86 E-value=0.00068 Score=77.29 Aligned_cols=208 Identities=9% Similarity=0.035 Sum_probs=136.4
Q ss_pred eEEEEE-e-CCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969 456 PRQFEY-H-PSISCLMVFGT------------------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI 515 (721)
Q Consensus 456 V~~laf-s-P~dg~~LasGs------------------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La 515 (721)
+..+++ + | ++.++++++ .++.+.++|.++.+....+...+ .-..++.+ +++++++
T Consensus 136 phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg---~pd~~~~s-pdGk~~~ 210 (595)
T 1fwx_A 136 IHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDAD-YEGKWAF 210 (595)
T ss_dssp EEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS---CCCCEEEC-SSSSEEE
T ss_pred CcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC---CccceEEC-CCCCEEE
Confidence 778887 4 8 888888884 35689999999999988887533 23456676 6788888
Q ss_pred EEeCCC---------------eEEEEEcCCCC-------Cc----ccccccC----cc-eeEeccCCCeEEEEEecCCCE
Q 004969 516 AGSDNG---------------SLKLYDIRHMP-------PS----IRGMHYG----AG-TVTFDEFDQLTSVHVNSMDEL 564 (721)
Q Consensus 516 Sgs~DG---------------tVrIWDi~~~~-------~~----~~~~~~~----~~-~~~~~~~~~V~sv~~sp~~~~ 564 (721)
+++.+. .|.+.|..... .. +..+... .. ...........++.++|+|.+
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~ 290 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKH 290 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSE
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCE
Confidence 887553 34444433210 00 0000000 01 112222234578899999999
Q ss_pred EEEEeC-CCcEEEEECCCCc------------EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC-----
Q 004969 565 FLASGY-SKNIALYDINSGR------------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK----- 626 (721)
Q Consensus 565 lls~g~-Dg~IrlWDl~s~~------------~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~----- 626 (721)
+++++. +.+|.++|+.+.+ .+.... -......++|+|+| +..++.-.|++|.+||+...
T Consensus 291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~ 367 (595)
T 1fwx_A 291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA 367 (595)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc
Confidence 998884 7899999999653 334443 45678899999999 88888888999999998761
Q ss_pred ---CceeEEEecCCCCe--E----EEEEecCCCEEEEEeCC--CcE-----------EEEEcCCCcc
Q 004969 627 ---PIQPCYTASSSKGN--V----MVCFSPDDHYLLGKGSG--TSM-----------FVQSLRGDPF 671 (721)
Q Consensus 627 ---~~~~~~~~~~~~~~--v----sl~fSpdg~~Lasgs~D--g~I-----------~VWDl~g~~l 671 (721)
....+.++..+..+ . ....+|||++|+++..- ..+ .++|+.+..+
T Consensus 368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 12334455555443 1 23568999999987542 233 7888876543
No 262
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.83 E-value=4.9e-06 Score=81.66 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=79.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+.. +..-+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|+ .|.|+.+..+.|..||+|+.|
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHHhCCCCCCCEE
Confidence 468888888876652 11112222245779999999998864 7888999999999 888999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+|.+|++..+ .-.++..|++|+.|+++.
T Consensus 108 ~L~~N~l~~~--~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGNDISVV--PEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSSCCCBC--CTTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCee--ChhhhhcCccccEEEeCC
Confidence 9999998855 112477888898888763
No 263
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.82 E-value=0.00052 Score=71.12 Aligned_cols=196 Identities=9% Similarity=0.035 Sum_probs=120.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~ 545 (721)
+..+..|+.+|.|..+|.. |+....... +...+.++... .++ .+..++.++.|..+|.. ++......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~-~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~------- 173 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVS-EDG-TIYVGSNDNYLYAINPD-GTEKWRFK------- 173 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEEC-TTS-CEEEECTTSEEEEECTT-SCEEEEEE-------
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEc-CCC-EEEEEcCCCEEEEECCC-CCEeEEEe-------
Confidence 4667888889999999998 777666552 33344555543 344 46678888999999988 44311110
Q ss_pred EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 546 ~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs 625 (721)
.....+.++...+++. +.+++ +.+..|| .+++....+.. ....+.++...++| .+..++.++.+..+|..
T Consensus 174 --~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~- 243 (330)
T 3hxj_A 174 --TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDG--TIYVTSLDGHLYAINPD- 243 (330)
T ss_dssp --CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTS--CEEEEETTTEEEEECTT-
T ss_pred --cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCC--eEEEEcCCCeEEEECCC-
Confidence 0112345555645555 44455 8899999 77888777764 55668888888887 35556778888888853
Q ss_pred CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc---cCeEEEEECCCC
Q 004969 626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN---MSILAAYTRPSS 687 (721)
Q Consensus 626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~---~~V~~v~fsP~~ 687 (721)
+... .......... ++...++|. |..++.+|.++.+|..++.+..+. ..+.++...+++
T Consensus 244 g~~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g 306 (330)
T 3hxj_A 244 GTEK--WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENG 306 (330)
T ss_dssp SCEE--EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTC
T ss_pred CCEe--EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCC
Confidence 3332 2222222222 455555665 555777889999987655433322 223334444555
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.82 E-value=0.01 Score=64.65 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=126.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+..++|++.++.++.+-...+.|+.+++... .....+. .......++++.+..+++.++-...+.|.+.++++
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 48899999955555555566789999998752 2222232 23356778888644566666666778999999876
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.... ............++++|.++.++.+.. .+.|...++........... .-...+.|+++|++.++
T Consensus 191 ~~~~---------~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 191 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRL 260 (400)
T ss_dssp CSEE---------EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEE
T ss_pred CceE---------EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEE
Confidence 4321 111112234688999998888877763 37899999874333333332 34678999999887566
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP 670 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~ 670 (721)
.++-...+.|..+|+.......+..... -..+..+++. .+..+.+-...+.|..++ ..|..
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 6666667889999997654433333221 2344566663 334444555667888888 34544
No 265
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.81 E-value=4.4e-06 Score=95.96 Aligned_cols=89 Identities=18% Similarity=0.292 Sum_probs=73.4
Q ss_pred chhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHH
Q 004969 111 SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT 190 (721)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (721)
.++.+-+..+.... -+.|+|++|+|..+.-++.+.+|.+|+|+ .|.|+.|+. .|..||+|+.|.+.+|++..+
T Consensus 429 ~l~~n~i~~l~~~~--L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l--- 501 (567)
T 1dce_A 429 FLLENSVLKMEYAD--VRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV--- 501 (567)
T ss_dssp HHHHHHHHHHHHTT--CSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC---
T ss_pred hhhcccccccCccC--ceEEEecCCCCCCCcCccccccCcEeecC-cccccccch-hhhcCCCCCEEECCCCCCCCC---
Confidence 34444444444433 46799999999999889999999999999 889999976 899999999999999999976
Q ss_pred HHHhhcCCcchhhccce
Q 004969 191 IAALSKLPSLAELRFQN 207 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~~ 207 (721)
.++.+|++|++|.+..
T Consensus 502 -p~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 502 -DGVANLPRLQELLLCN 517 (567)
T ss_dssp -GGGTTCSSCCEEECCS
T ss_pred -cccCCCCCCcEEECCC
Confidence 5899999999996543
No 266
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.79 E-value=1.1e-05 Score=76.74 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=82.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc-ccc-ccccceeeEEecccccccccccc-cccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNM-IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (721)
.+|++++|..+.+..- .-...--.-+.|+|++|+|.. +.. ++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcCCCCCE
Confidence 5799999999877643 222233356889999999998 433 3358999999999 779999976 78999999999
Q ss_pred hccccccchhhhHH-HHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTT-IAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 208 (721)
|.+.+|++..+-.. ..++.+||+|++|.+..|
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999876321 247889999999976654
No 267
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.79 E-value=1.6e-05 Score=83.19 Aligned_cols=102 Identities=19% Similarity=0.343 Sum_probs=61.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+..- ..+. .--.=+.|+|++|++..+..++.+++|++|+|+ .|.|+.+.. |..+|+|+.|.+
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcchhhccCCCCCEEEcc-CCccccchh--hcCCCccCEEEC
Confidence 4566666666554431 1111 112245566777776666666666777777776 566666654 666777777777
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccceeeec
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCC 211 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (721)
.+|++..+ .++.++++|+.|.+..+-+.
T Consensus 186 ~~N~i~~l----~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISDL----RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCBC----GGGTTCTTCSEEEEEEEEEE
T ss_pred CCCcCCCC----hhhccCCCCCEEECcCCccc
Confidence 77766654 55677777777776666543
No 268
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.76 E-value=7.2e-06 Score=80.33 Aligned_cols=99 Identities=20% Similarity=0.333 Sum_probs=52.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc--cccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|..+.+.......++. =-.=+.|+|++|++.. ...++.+++|++|+|.+|..|+.++ -|..||+|+.|
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L 164 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSL 164 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEE
T ss_pred CCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEE
Confidence 45666666655554322222211 0123456666666655 4555566666666666433366654 35666666666
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
.+.+|+|..+ .++.++|+|++|.+
T Consensus 165 ~l~~n~i~~~----~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 165 NIQFDGVHDY----RGIEDFPKLNQLYA 188 (197)
T ss_dssp ECTTBCCCCC----TTGGGCSSCCEEEE
T ss_pred ECCCCCCcCh----HHhccCCCCCEEEe
Confidence 6666666543 35566666666544
No 269
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.75 E-value=8.2e-06 Score=78.73 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=68.9
Q ss_pred eEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccc
Q 004969 103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180 (721)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (721)
+.|+++++.++. +=..+ +-.-+.|+|++|+|..+ ..++.+++|++|+|+ .|.|+.++.+-|..||+|+.|.|.
T Consensus 15 ~~l~~~~n~l~~-iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCc-cCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECC
Confidence 456666654432 00111 13446788888888887 347788888888888 778888888888888888888888
Q ss_pred cccchhhhHHHHHhhcCCcchhhccce
Q 004969 181 ETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+|++..+= -.++.+|++|+.|++..
T Consensus 90 ~N~l~~l~--~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNHLKSIP--RGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSCCCCCC--TTTTTTCTTCSEEECCS
T ss_pred CCccceeC--HHHhccccCCCEEEeCC
Confidence 88887551 12477788888887653
No 270
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=1.6e-05 Score=82.33 Aligned_cols=93 Identities=20% Similarity=0.321 Sum_probs=62.5
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc----cc-cccceeeEEecccccccccccc--cccccc
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN----MI-GEFKRIHTLNLDYSTSLTSFKE--DCFSCM 171 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~~--~~~~~~ 171 (721)
|.--+..||.. |..| .+|..+|+.+ ..|+...+. .+ ..|++|++|+|. +|.|+.+.. +.|..+
T Consensus 126 n~~~~~LdLs~--l~~d--p~L~~~~l~l-----~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l 195 (267)
T 3rw6_A 126 DGSQQALDLKG--LRSD--PDLVAQNIDV-----VLNRRSCMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKA 195 (267)
T ss_dssp ETTTTEEECTT--GGGC--HHHHHTTCCC-----CTTSHHHHHHHHHHHHHHCTTCCEEECT-TSCCCCCGGGTTHHHHS
T ss_pred chhccccCHHH--cCCC--cchhhcCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEECC-CCCCCCCccchhHHhhC
Confidence 44467788877 5544 3566666543 344322221 22 358899999999 889999875 778899
Q ss_pred cccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 172 PNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
|+|+.|.+.+|+|..+ ..+..|..| +|++|
T Consensus 196 ~~L~~L~Ls~N~i~~~-~~l~~l~~l-~L~~L 225 (267)
T 3rw6_A 196 PNLKILNLSGNELKSE-RELDKIKGL-KLEEL 225 (267)
T ss_dssp TTCCEEECTTSCCCSG-GGGGGGTTS-CCSEE
T ss_pred CCCCEEECCCCccCCc-hhhhhcccC-CcceE
Confidence 9999999999999976 334444433 55444
No 271
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.74 E-value=7.2e-06 Score=80.83 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=44.2
Q ss_pred ceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
=+.|+|++|+|..+.. ++.+++|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+= -.++.++++|++|+
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLR 130 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEE
Confidence 3556666666665543 4455666666666 55566666666666666666666666655431 12245566666665
Q ss_pred cce
Q 004969 205 FQN 207 (721)
Q Consensus 205 ~~~ 207 (721)
++.
T Consensus 131 l~~ 133 (208)
T 2o6s_A 131 LYQ 133 (208)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 272
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.73 E-value=9e-06 Score=78.03 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=55.9
Q ss_pred ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
-+.|+|++|+|..+. .++.+.+|++|+|+ .|.|+.+..+-|..||+|+.|.+.+|++..+=. .++.+|++|++|.
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~ 108 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTHIW 108 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEE
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECCCCccCEeCH--HHhcCCCCCCEEE
Confidence 366888888887773 36777788888888 677888888888888888888888887775411 2466777777776
Q ss_pred cc
Q 004969 205 FQ 206 (721)
Q Consensus 205 ~~ 206 (721)
+.
T Consensus 109 L~ 110 (170)
T 3g39_A 109 LL 110 (170)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 273
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.72 E-value=6.6e-06 Score=82.36 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=76.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
..|+.++|+++.+..-.- +.+..=-.=+.|+|++|+|..+ +.++.+.+|++|+|. .|.|+.++...|..||+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCEE
Confidence 467888888876542100 0111112347799999999888 667888999999999 788999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.|.+|+|..+= ..++.+|++|++|.+..
T Consensus 110 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 110 LLNANKINCLR--VDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCEeC--HHHcCCCCCCCEEECCC
Confidence 99999887651 24677888888887654
No 274
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.72 E-value=8.5e-06 Score=82.96 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=37.2
Q ss_pred eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+....|..+++|+.|.|.+|++..+=. .++.++++|++|.+
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L 162 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSL 162 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcC-CCcCCCcChhHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEEC
Confidence 44555555555443 33445555555555 445555555555555555555555555543310 13444555555544
Q ss_pred ce
Q 004969 206 QN 207 (721)
Q Consensus 206 ~~ 207 (721)
+.
T Consensus 163 ~~ 164 (251)
T 3m19_A 163 ST 164 (251)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 275
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.71 E-value=9e-06 Score=80.14 Aligned_cols=105 Identities=15% Similarity=0.262 Sum_probs=82.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+.. .....+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhHhccCCcCCEE
Confidence 579999999887652 112222222345789999999998865 6789999999999 789999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+|++..+=. .++.++++|++|.+..+
T Consensus 130 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 130 RLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSC
T ss_pred ECCCCccceeCH--HHhccCCCccEEEecCC
Confidence 999999885411 34788999999988765
No 276
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.71 E-value=1.8e-05 Score=82.66 Aligned_cols=74 Identities=19% Similarity=0.438 Sum_probs=40.7
Q ss_pred eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+.|+|++|++..+.-++.+++|++|+|. .|.|+.+ ..|..||+|+.|.|.+|++..+ .++.+|++|++|.+..
T Consensus 93 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 93 GWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCS
T ss_pred CEEECCCCcCCCChhhccCCCCCEEECC-CCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccC
Confidence 4455555555555555555555555555 4455555 3355555555555555555544 4455555555555544
Q ss_pred e
Q 004969 208 W 208 (721)
Q Consensus 208 ~ 208 (721)
|
T Consensus 166 N 166 (291)
T 1h6t_A 166 N 166 (291)
T ss_dssp S
T ss_pred C
Confidence 3
No 277
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.70 E-value=2.2e-05 Score=90.87 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=80.6
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+.. +..+. .=-.-+.|+|++|+|..+..++.+++|++|+|+ .|.|+.+.. |..||+|+.|.|
T Consensus 109 ~~L~~L~Ls~N~l~~--l~~l~-~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD--INGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCC--CGGGG-GCTTCSEEECCSSCCCCCGGGGSCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCC--Ccccc-CCCccCEEECCCCccCCchhhcccCCCCEEECc-CCcCCCchh--hccCCCCCEEEC
Confidence 568888888776653 11111 112356788888888888888888899999998 778888866 888999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccceeeecCC
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD 213 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (721)
.+|++..+ .+|.+|++|+.|++..|-+...
T Consensus 183 s~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISDL----RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCBC----GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCCC----hHHccCCCCCEEEccCCcCcCC
Confidence 99988876 6788999999999988877654
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.0085 Score=66.11 Aligned_cols=201 Identities=8% Similarity=0.028 Sum_probs=118.2
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---Ce-EEEEEcC
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GS-LKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---Gt-VrIWDi~ 529 (721)
.+..++|+|. +...|..+...+.|+.++..++....... ......+++|. ++++++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEEC-CCCCEEEEcCCCCcccceEEEEECC
Confidence 5889999993 23444444444899999998887665443 34568899998 677744444311 11 2223322
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEE-ccccCCCeEEEEEcCCCCc
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVF-ADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l-~~~h~~~V~sI~fsPdg~~ 607 (721)
.+.. .............+++++.++.++.+. .++.|+.+|..++.....+ ..........++|+|++..
T Consensus 216 ~~~~---------~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 216 SGFT---------ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GTTC---------CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred CCee---------ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 2111 001111223346788888555555554 5788999999877763333 2112233457999999943
Q ss_pred EEEEEECCCcEEEEECCC--CCcee--EEEec-CC-------------CCeEEEEE---------ecCCCEEEEEeCCCc
Q 004969 608 IFATSSFDQDVKLWDLRQ--KPIQP--CYTAS-SS-------------KGNVMVCF---------SPDDHYLLGKGSGTS 660 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs--~~~~~--~~~~~-~~-------------~~~vsl~f---------Spdg~~Lasgs~Dg~ 660 (721)
++++-...+.|+.++... +.... .+... +. ..+..+++ .++|.+.++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 666666778999988652 32111 11111 11 12346888 677777777666778
Q ss_pred EEEEEcCC
Q 004969 661 MFVQSLRG 668 (721)
Q Consensus 661 I~VWDl~g 668 (721)
|+.++..|
T Consensus 367 I~~~~~~G 374 (433)
T 4hw6_A 367 VRVLTPEG 374 (433)
T ss_dssp EEEECTTS
T ss_pred EEEECCCC
Confidence 88887654
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.69 E-value=0.0009 Score=77.82 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=128.1
Q ss_pred EEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CC-----CeEEEEEcC
Q 004969 457 RQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DN-----GSLKLYDIR 529 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~D-----GtVrIWDi~ 529 (721)
.++++.+ ++.+++.|+. ++.+.+||..+++....-....... -.+++.. +++..++.|+ .+ ..+.+||..
T Consensus 246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 3466777 8899999984 5689999998876544322111111 2233443 4788888888 44 578999998
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccC-------
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHK------- 593 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~------- 593 (721)
+..................+. ..+..++..++.++. ...+..||..+......... +.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~ 396 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAP 396 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECC
T ss_pred CCcceeCCCcccccccccccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCC
Confidence 754321100000000000000 001122333344433 34678899987764433321 21
Q ss_pred --CCeEEEEEcCCCCcEEEEEECCC-----------cEEEEECCCCCceeEE--EecCCCCeEEEEEecCCCEEEEEeCC
Q 004969 594 --EHINVVKFSNHSPSIFATSSFDQ-----------DVKLWDLRQKPIQPCY--TASSSKGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 594 --~~V~sI~fsPdg~~lLaSgs~Dg-----------tIrIWDlrs~~~~~~~--~~~~~~~~vsl~fSpdg~~Lasgs~D 658 (721)
..-.++.|...+..+++.|+.++ .|.+||..+.....+. .+.......+++..|+|+.++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 12345555443337888888543 6888998876543332 22221122256777899999998854
Q ss_pred -----------CcEEEEEcCCCccccc------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 659 -----------TSMFVQSLRGDPFRDF------NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 659 -----------g~I~VWDl~g~~l~~~------~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
..+.+||......... ......+...|++ .+++.||..
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg-------~v~v~GG~~ 531 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDG-------RVFNGGGGL 531 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTS-------CEEEEECCC
T ss_pred cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCc-------EEEecCCCC
Confidence 4678999764332111 1122344556888 889998864
No 280
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.69 E-value=1e-05 Score=82.32 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=79.3
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccch
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
...|+.++|+++.+..-.- ..+..=-.=+.|+|++|+|..+.- ++.+++|++|+|. .|.|+.+..+.|..||+|+.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCE
Confidence 3578888888876643211 111111245779999999988765 6788999999999 88899999999999999999
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.|.+|++..+- ..++.++++|++|.+..+
T Consensus 112 L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 112 LYLGGNQLKSLP--SGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp EECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EEcCCCcCCCcC--hhHhccCCcccEEECcCC
Confidence 999999988551 123678899999988765
No 281
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.68 E-value=8.5e-05 Score=80.34 Aligned_cols=135 Identities=13% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCcceeeEeecCCccccchHHHHHHHH--HhcccceEeeccCCchhhHHHHHhhcC--C----------ccceEeecccc
Q 004969 70 ATEIEAVDVRSGTSCMLTGEFALSLMH--AIDQKLRVVDLHDSSFGKDFIRNLSQR--G----------LMCEVLNLRSS 135 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~ 135 (721)
-..+..+|+.+ +.+..+-+..+.. .-+.+|+.++|.++.++......+... . -.=+.|+|++|
T Consensus 93 ~~~L~~L~Ls~---n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 93 CPKLHTVRLSD---NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CTTCCEEECCS---CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CCcccEEECCC---CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 36677777733 3455543333322 235789999999988875444433321 0 23456888888
Q ss_pred cccccc------cccccceeeEEeccccccccc-----ccccccccccccchhccccccchhh--hHHHHHhhcCCcchh
Q 004969 136 RFRKLN------MIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAE 202 (721)
Q Consensus 136 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 202 (721)
++..-. .++.+++|++|+|. .|.|+. +....|..+|+|+.|.|.+|++..- -.-..+|.++++|++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 886332 44567788999998 667772 3334778889999999999988532 112346788888888
Q ss_pred hcccee
Q 004969 203 LRFQNW 208 (721)
Q Consensus 203 ~~~~~~ 208 (721)
|.++.|
T Consensus 249 L~L~~n 254 (386)
T 2ca6_A 249 LGLNDC 254 (386)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 876654
No 282
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.68 E-value=0.0011 Score=77.35 Aligned_cols=196 Identities=10% Similarity=0.061 Sum_probs=117.0
Q ss_pred CCeEEEEECCCCeEEEEeecCC-CC----------------------------CCeEEEEEeeCCCCEEEEEeCCCe---
Q 004969 475 DGEIVVVNHENENIVSYIPSFG-AM----------------------------NSVLGLCWLKKYPSKLIAGSDNGS--- 522 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~-H~----------------------------~~V~sl~fsp~d~~~LaSgs~DGt--- 522 (721)
+|.|..+|..+|+.+..+.... .. .....+++. +..+.++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccc
Confidence 5899999999999988775311 10 011135665 45678888877764
Q ss_pred ----------------EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCCc
Q 004969 523 ----------------LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSGR 583 (721)
Q Consensus 523 ----------------VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~~ 583 (721)
|..+|..+++........+.....+....+.....+..++. .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 88999998876433221111100111112222222323453 57777889999999999999
Q ss_pred EEEEEccccC-----------CCe------------------------EEEEEcCCCCcEEEEE----------------
Q 004969 584 RLQVFADMHK-----------EHI------------------------NVVKFSNHSPSIFATS---------------- 612 (721)
Q Consensus 584 ~v~~l~~~h~-----------~~V------------------------~sI~fsPdg~~lLaSg---------------- 612 (721)
.+........ .++ ..++++|+.+ ++...
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence 8854432010 000 1267788763 43331
Q ss_pred --------------------ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcc
Q 004969 613 --------------------SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF 671 (721)
Q Consensus 613 --------------------s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l 671 (721)
..+|.|..||+.+++..-.... ........+...+.++++++.|+.++.||.+ |+.+
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 1247899999999865333322 2222233455578889999999999999987 5554
Q ss_pred ccc
Q 004969 672 RDF 674 (721)
Q Consensus 672 ~~~ 674 (721)
..+
T Consensus 493 ~~~ 495 (668)
T 1kv9_A 493 WQF 495 (668)
T ss_dssp EEE
T ss_pred eEe
Confidence 433
No 283
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.67 E-value=1.1e-05 Score=82.91 Aligned_cols=105 Identities=25% Similarity=0.337 Sum_probs=76.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+||.++|.++.+.. .-...+..=-.=+.|+|++|++..+. .++.+++|++|+|. .+.|+.+....|..||+|+.|
T Consensus 61 ~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEE
Confidence 578888888876541 11112222224577889888888776 45778889999998 788888888888999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+.+|++..+- ..++.++++|++|++..+
T Consensus 139 ~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 139 SLGYNELQSLP--KGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCccC--HhHccCCcccceeEecCC
Confidence 99998887552 234778888888887654
No 284
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.67 E-value=1.1e-05 Score=77.52 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=66.0
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+.. .....+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..||+|+.|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccCEE
Confidence 466777777665542 111111111234667777777777654 5677777778877 667777777777777888888
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+|++..+=. .++.++++|++|.++..
T Consensus 106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred ECcCCcceEeCH--HHhcCCcccCEEEecCC
Confidence 887777765411 23566777777766543
No 285
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.66 E-value=2.1e-05 Score=82.79 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=70.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|+++.+..- .. ...=-.=+.|+|+.|++..+.-++.+++|++|+|. .+.|+.+.. |..||+|+.|.|
T Consensus 63 ~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEEC
Confidence 5688888887755421 11 11222456788888888888877888888888888 677888754 888888888888
Q ss_pred ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++..+ .++.++++|++|.+..|
T Consensus 137 ~~n~l~~~----~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 137 DLNQITNI----SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CSSCCCCC----GGGGGCTTCCEEECCSS
T ss_pred CCCccCcC----ccccCCCCccEEEccCC
Confidence 88887765 45778888888876544
No 286
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.66 E-value=7.4e-06 Score=80.13 Aligned_cols=98 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred eEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc---ccccceeeEEecccccccccccccccccccccchhcc
Q 004969 103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
+.|++.++.++. +=.++.. .-+.|+|++|+|..+.. ++.+.+|++|+|+ .|.|+.+..+.|..|++|+.|.|
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc-CccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEEC
Confidence 566777655431 1111221 55778888888888753 6788888888888 77888888888888888888888
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccce
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+|++..+- ..++.+|++|++|+++.
T Consensus 86 s~N~l~~~~--~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 86 GENKIKEIS--NKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CSCCCCEEC--SSSSTTCTTCCEEECCS
T ss_pred CCCcCCccC--HHHhcCCCCCCEEECCC
Confidence 888887652 13367788888887654
No 287
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.65 E-value=7.6e-06 Score=80.06 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=79.6
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|+++.++.-.-..++..=-.=+.|+|++|+|..+ ..++.+.+|++|+|. .|.|+.+...-|..||+|+.|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHHHhcCCCCCCEE
Confidence 37888888887764311111111112357899999999988 567889999999999 889999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+.+|++..+- -.++.++++|++|+++.
T Consensus 108 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 108 NLYDNQISCVM--PGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSSCCCEEC--TTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCeeC--HHHhhcCCCCCEEEeCC
Confidence 99999988652 24577888999887754
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.65 E-value=0.031 Score=58.56 Aligned_cols=186 Identities=10% Similarity=0.025 Sum_probs=115.4
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (721)
...|+..|+.++.....+. ....+.+++|.+.++..+++-...+.|..+++.+.... . ......-.......
T Consensus 9 ~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~----~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S----SYDTVISRDIQAPD 80 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCC
T ss_pred CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-c----ccEEEEeCCCCCcC
Confidence 3569999998876655553 23568899998545556666667789999998762100 0 00001001113457
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeEE
Q 004969 555 SVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPCY 632 (721)
Q Consensus 555 sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~~ 632 (721)
.+++.+.++.++.+. ..+.|.++|+........+.. .......++++|.++.++++.... +.|..+++..... ...
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEE
Confidence 888877677666664 578899999875443333332 345678999999764566665444 7888888865432 222
Q ss_pred EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 633 TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 633 ~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
....-..+..++++|++..|+.+. ..+.|..+|+.|..
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence 212233455899999877776655 45689999988643
No 289
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.64 E-value=1.7e-05 Score=73.74 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+....+......=-.-+.|+|++|++..+..++.+++|.+|+|. .|.|+..-...|..||+|+.|.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECC-CCcccchHHHHhhhCCCCCEEEC
Confidence 56777777776654212222222223456777777777777777777777777777 66777744456666777777777
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccceee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
.+|++..+ ....++..+++|++|++..|-
T Consensus 96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 96 SGNKIKDL-STIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp TTSCCCSH-HHHGGGGGCTTCCEEECTTCG
T ss_pred CCCcCCCh-HHHHHHhhCCCCCEEeCcCCc
Confidence 77777654 233566777777777776653
No 290
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.63 E-value=0.0065 Score=63.43 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=115.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CC-CCCCeEEEEEeeC-CCCEEEEEeC------------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FG-AMNSVLGLCWLKK-YPSKLIAGSD------------ 519 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~-H~~~V~sl~fsp~-d~~~LaSgs~------------ 519 (721)
.+..+++.+.++ .|..+...+.|..+|..++........ .+ .......+++. + +++..++-..
T Consensus 81 ~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceeh
Confidence 488999997344 455555555688898776543221111 01 12356788886 5 6766665432
Q ss_pred -----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc--EEEEEccc
Q 004969 520 -----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGR--RLQVFADM 591 (721)
Q Consensus 520 -----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~--~v~~l~~~ 591 (721)
+|.|..||..+++.. ...........+++++++..++++. ..+.|..||+.... ....+..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~----------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~- 227 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETT----------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK- 227 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEE----------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-
T ss_pred cccCCCceEEEEeCCCCEEE----------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-
Confidence 367888887654321 0011112346789999988776664 46889999987521 1222221
Q ss_pred cCCCeEEEEEcCCCCcEEEEEEC----------CCcEEEEECCCCCceeEEEecCC---CCeEEEEEecCCCEEEEEeCC
Q 004969 592 HKEHINVVKFSNHSPSIFATSSF----------DQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSPDDHYLLGKGSG 658 (721)
Q Consensus 592 h~~~V~sI~fsPdg~~lLaSgs~----------DgtIrIWDlrs~~~~~~~~~~~~---~~~vsl~fSpdg~~Lasgs~D 658 (721)
..+ ...+++.++| ++.++... .+.|..+|.. ++....+..... .....+++ .+++.+++....
T Consensus 228 ~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~ 303 (322)
T 2fp8_A 228 IPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH 303 (322)
T ss_dssp CSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred CCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence 223 7889999999 66666544 4668888875 443333333321 12225555 466666665667
Q ss_pred CcEEEEEcC
Q 004969 659 TSMFVQSLR 667 (721)
Q Consensus 659 g~I~VWDl~ 667 (721)
+.|.++++.
T Consensus 304 ~~i~~~~~~ 312 (322)
T 2fp8_A 304 GSVGILVYD 312 (322)
T ss_dssp SEEEEEEC-
T ss_pred CceEEEecc
Confidence 889999886
No 291
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.63 E-value=3.1e-05 Score=81.53 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=91.6
Q ss_pred CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceee
Q 004969 71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIH 150 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (721)
..+..+|+.+-.-..+.. + .--.+|+.++|+.+.+..- ..+ ..=-.=+.|+|++|++..+..++.+++|+
T Consensus 63 ~~L~~L~L~~n~i~~~~~------~-~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 132 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP------L-KNLTKITELELSGNPLKNV--SAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132 (308)
T ss_dssp TTCCEEECCSSCCCCCGG------G-TTCCSCCEEECCSCCCSCC--GGG-TTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred CCCCEEEccCCcCCCChh------H-ccCCCCCEEEccCCcCCCc--hhh-cCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence 566777774432222222 1 1236899999999876542 221 11234578999999999999999999999
Q ss_pred EEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 151 TLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+|+|+ .|.|+.+.. |..+|+|+.|.|.+|++..+ .++.++++|++|++..|
T Consensus 133 ~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 133 VLYLD-LNQITNISP--LAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDN 183 (308)
T ss_dssp EEECC-SSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred EEECC-CCccCcCcc--ccCCCCccEEEccCCcCCCC----hhhcCCCCCCEEECCCC
Confidence 99999 789999876 99999999999999999876 56999999999987654
No 292
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.63 E-value=1.3e-05 Score=83.83 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=64.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|+++.+.. +-.....--+=+.|+|++|+|..+ +.++.+.+|++|+|. .|.|+.+..+.|..+++|+.|
T Consensus 77 ~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp TTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCCEE
Confidence 457777777765541 111111112336677777777777 346677777777777 667777777777777777777
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+.+|++..+-. .++.+|++|++|.++.
T Consensus 154 ~L~~N~l~~l~~--~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 154 SLANNNLTELPA--GLLNGLENLDTLLLQE 181 (290)
T ss_dssp ECTTSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCH--HHhcCcCCCCEEECCC
Confidence 777777765421 2356677777776554
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.0091 Score=65.77 Aligned_cols=157 Identities=10% Similarity=0.158 Sum_probs=97.3
Q ss_pred CeEEEEEeC-CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC----eEEEEEc
Q 004969 455 RPRQFEYHP-SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG----SLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP-~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG----tVrIWDi 528 (721)
.+..++++| .++.++++ ...+.|+.+|..++....... ......+|+|. ++++.|+.+.. .+ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEEC---CCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEec---CCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeC
Confidence 588999998 24554444 444889999998776554443 34568899998 67775555544 22 3333443
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
.. .... ...+........++++|+++.++++. ..+.|..+|...+................++|+|+|..
T Consensus 213 ~g-~~~~--------~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 213 ES-GFKV--------ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp GG-TSCS--------EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred CC-ceee--------eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 32 2110 01111223357788989555555554 57889999998766533332212345789999999943
Q ss_pred EEEEEECCCcEEEEECCC
Q 004969 608 IFATSSFDQDVKLWDLRQ 625 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs 625 (721)
++++-...+.|..++...
T Consensus 284 lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 666666788899987653
No 294
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.61 E-value=1.5e-05 Score=79.85 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=82.0
Q ss_pred ccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccccc--ccccceeeEEeccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (721)
.+|+.++|+++.+.. +.+..| -.=+.|+|++|+|..+.. ++.+.+|++|+|+ .|.|+.+..+.|..||+|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l----~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGL----RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC----SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCC----cCCCEEECCCCcCCccCHhHccCCCCCCEEECC-CCCCCEeCHHHcCCCCCC
Confidence 579999999987643 222222 235789999999998865 6789999999999 889999999999999999
Q ss_pred chhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+.|.|.+|++..+-. .++..+++|++|.++.
T Consensus 131 ~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECH--HHHhCCCCCCEEEeCC
Confidence 999999999987632 3577889999988764
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.61 E-value=0.0024 Score=73.36 Aligned_cols=194 Identities=12% Similarity=0.044 Sum_probs=115.6
Q ss_pred EEEEeCCCCCEEEEEEC--------------------C----CeEEEEECCCCeEEEEeecCCCC--------CCeEEEE
Q 004969 458 QFEYHPSISCLMVFGTL--------------------D----GEIVVVNHENENIVSYIPSFGAM--------NSVLGLC 505 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~--------------------D----G~I~IWdl~tg~~i~~l~~~~H~--------~~V~sl~ 505 (721)
..++.| ...+++.+.. | +.|.-+|..+|+.+..++...|. .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 356777 5666776663 2 68999999999999888754442 2222 12
Q ss_pred EeeCCC---CEEEEEeCCCeEEEEEcCCCCCcccccccC------------ccee---------------------Eecc
Q 004969 506 WLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG------------AGTV---------------------TFDE 549 (721)
Q Consensus 506 fsp~d~---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~------------~~~~---------------------~~~~ 549 (721)
....++ ..++.++.+|.+.++|..+++......... ...+ .+..
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 110245 378889999999999999887643221111 0000 0000
Q ss_pred ---CCCeEEEEEecCCCEEEEEe---------------------------------CCCcEEEEECCCCcEEEEEccccC
Q 004969 550 ---FDQLTSVHVNSMDELFLASG---------------------------------YSKNIALYDINSGRRLQVFADMHK 593 (721)
Q Consensus 550 ---~~~V~sv~~sp~~~~lls~g---------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~ 593 (721)
...-..++++|..+.+++.. .+|.|..||+.+++.+..... .
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~ 485 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--H 485 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--S
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--C
Confidence 00012345666555555432 257899999999999988763 2
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG 656 (721)
Q Consensus 594 ~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs 656 (721)
..+..-.....+ .+++.|+.|+.++.||.++++..-.+.........-+.|..+|+ |+++.+
T Consensus 486 ~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 486 LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 222221112234 47778999999999999999765444443221111367778887 444433
No 296
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.61 E-value=1.5e-05 Score=82.20 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=41.2
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|+|..+.. ++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+= -.++.++++|++|.+
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDL 164 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEEC
Confidence 445555555555443 4455555555555 45555555555555555555555555554331 112445555555555
Q ss_pred cee
Q 004969 206 QNW 208 (721)
Q Consensus 206 ~~~ 208 (721)
..|
T Consensus 165 ~~n 167 (272)
T 3rfs_A 165 SYN 167 (272)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 297
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.60 E-value=1.1e-05 Score=80.87 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=38.7
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++..+- -.++.+|++|++|++
T Consensus 60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 60 RKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSL 136 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEEC
T ss_pred CEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEEC
Confidence 445555555555442 4455555555555 45555555555555555555555555554331 123444555555544
Q ss_pred c
Q 004969 206 Q 206 (721)
Q Consensus 206 ~ 206 (721)
+
T Consensus 137 ~ 137 (220)
T 2v70_A 137 Y 137 (220)
T ss_dssp T
T ss_pred C
Confidence 3
No 298
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.59 E-value=3.1e-05 Score=79.67 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=77.4
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+..-- . ...=-.-+.|+|++|++..+.-+.. .+|.+|+|+ .|.|+.++ .|..||+|+.|.+
T Consensus 63 ~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~-~N~l~~~~--~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD-NNELRDTD--SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC-SSCCSBSG--GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc-CCccCCCh--hhcCcccccEEEC
Confidence 57899999987664311 1 1122345789999999999877666 999999999 78999984 5999999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++..+ .++.+|++|++|++..|
T Consensus 136 s~N~i~~~----~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 136 RNNKLKSI----VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp TTSCCCBC----GGGGGCTTCCEEECTTS
T ss_pred CCCcCCCC----hHHccCCCCCEEECCCC
Confidence 99999877 58999999999987654
No 299
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.57 E-value=2.1e-05 Score=77.09 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=69.3
Q ss_pred cceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 126 MCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
.-+.|+|++|+|..+ ..++.+.+|++|+|+ .|.|+.+..+-|..|++|+.|.|.+|++..+= -.++.+|++|+.|.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYNRLRCIP--PRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCCccCEeC--HHHhCCCCCCCEEE
Confidence 457899999999988 577888999999999 89999999999999999999999999998762 23688999999997
Q ss_pred cce
Q 004969 205 FQN 207 (721)
Q Consensus 205 ~~~ 207 (721)
++.
T Consensus 109 L~~ 111 (193)
T 2wfh_A 109 LHG 111 (193)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.57 E-value=0.019 Score=60.51 Aligned_cols=201 Identities=9% Similarity=0.055 Sum_probs=126.1
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
+.+++|++.++.++.+-...+.|..++...+... ..+. .......++++.+..+.++++-...+.|.+++.......
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 6789999955666666667789999998765321 1121 112345677776445566666667789999998764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. ...........++++|.++.++.+.. .+.|...++.. +....+....-...+.++++|++..+.++-
T Consensus 115 ~---------l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 115 V---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp E---------EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred E---------EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 1 11122234588999988888777763 57888888863 333333211345678999999775666666
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP 670 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~ 670 (721)
+..+.|..+|+.......+. ......+..+++.. +..+.+-...+.|..++.. |..
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 77889999998754332222 12233455677753 3444444556788888874 543
No 301
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.56 E-value=3.2e-05 Score=79.65 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=54.7
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
-+.|+|+.|++..+..++.+++|++|+|. .+.|+.+....|..||+|+.|.|.+|++..+- -.++.++++|++|.++
T Consensus 65 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 65 VRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVENQLQSLP--DGVFDKLTNLTYLNLA 141 (272)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCCcCCccC--HHHhccCCCCCEEECC
Confidence 35677777777777777777777777777 66777777777777777777777777776441 1225677777777776
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.|
T Consensus 142 ~n 143 (272)
T 3rfs_A 142 HN 143 (272)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 302
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.54 E-value=3.8e-05 Score=81.56 Aligned_cols=103 Identities=13% Similarity=0.226 Sum_probs=73.6
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
..+|+.++|.++.+..--- ...--.=+.|+|++|++..+..++.+++|++|+|+ .+.|+.+ ..|..+|+|+.|.
T Consensus 220 ~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG-SNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCC--GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEcc-CCccCCC--hhhcCCCCCCEEE
Confidence 3678888888876543211 12222346788888888888878888888888888 6678887 4588888888888
Q ss_pred cccccchhhhHHHHHhhcCCcchhhccceee
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
+.+|++... ...++.++++|++|.++.|-
T Consensus 294 L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 294 LNNNQLGNE--DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCGG--GHHHHHTCTTCSEEECCSSS
T ss_pred CcCCcCCCc--ChhHhhccccCCEEEccCCc
Confidence 888887654 33567788888888877663
No 303
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.54 E-value=0.022 Score=60.75 Aligned_cols=197 Identities=7% Similarity=0.025 Sum_probs=123.7
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
+|.+..+ ++ +|+.+ ....|+..++........+. ....+.+++|.+.++.++++-...+.|..+++.+....
T Consensus 37 ~C~~~~~-~~-~ll~~-~~~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-- 108 (349)
T 3v64_C 37 SCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-- 108 (349)
T ss_dssp CEEESSS-CC-EEEEE-CBSCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred ccccccc-Cc-eeEee-cccceEEEeCCCCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce--
Confidence 3444444 33 34433 34568888887655544443 23458899998555555566667789999998875421
Q ss_pred ccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D 615 (721)
.+..........+++.+.++.++.+. ..+.|.+.++........+.. .......++++|.++.++.+-...
T Consensus 109 -------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 109 -------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp -------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-TCSCEEEEEEETTTTEEEEEECSS
T ss_pred -------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC-CCCCcceEEEecCcCeEEEeccCC
Confidence 11111122346788887777776665 467899999875443333332 445678999999765677776666
Q ss_pred -CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 616 -QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 616 -gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
+.|..+++.......+ ...+-..+..++++|++..|+.+. ..+.|..+++.|..
T Consensus 181 ~~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 181 TPRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp SCEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 8899999876432211 112233456899999777776654 45689999988643
No 304
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.54 E-value=0.004 Score=71.33 Aligned_cols=190 Identities=12% Similarity=-0.025 Sum_probs=114.1
Q ss_pred EEEeCCCCCEEEEEECC----------------CeEEEEECCCCeEEEEeecCCCC--------CCeEEEEEeeCCC---
Q 004969 459 FEYHPSISCLMVFGTLD----------------GEIVVVNHENENIVSYIPSFGAM--------NSVLGLCWLKKYP--- 511 (721)
Q Consensus 459 lafsP~dg~~LasGs~D----------------G~I~IWdl~tg~~i~~l~~~~H~--------~~V~sl~fsp~d~--- 511 (721)
+++.+ ....+..++.+ +.|..+|..+|+.+..++...|. .++. +... .++
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~-~~G~~~ 316 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQP-VNGKMT 316 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEE-ETTEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eecc-cCCcEE
Confidence 55677 44556655532 36999999999998888754332 2222 2211 245
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCcccccccC-c-----------ceeE-------------eccC-----CCeEEEEEecC
Q 004969 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-A-----------GTVT-------------FDEF-----DQLTSVHVNSM 561 (721)
Q Consensus 512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-~-----------~~~~-------------~~~~-----~~V~sv~~sp~ 561 (721)
..++.++.+|.+.++|..+++......... . ..+. .... ..-..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 357788999999999999887643221111 0 0000 0000 00134567777
Q ss_pred CCEEEEEe-------------------------------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 562 DELFLASG-------------------------------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 562 ~~~lls~g-------------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
.+.+++.. .+|.+..||+.+++.+.++.. ...+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEEC
Confidence 77776653 247899999999999988863 333333223333
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG 654 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las 654 (721)
+ .+++.++.|+.++.||.++++..-.+..........+.+..+|+.+++
T Consensus 475 g-g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 G-GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp T-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred C-CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 4 467779999999999999997654444332211113456677765543
No 305
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.53 E-value=2.2e-05 Score=78.55 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=81.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+..-. ..-+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..|++|+.|
T Consensus 57 ~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 57 PQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-TSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC-CCcCCeECHhHcCCCccCCEE
Confidence 47999999988654210 0111122235789999999998865 7889999999999 899999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+.+|++..+= -.++.+|++|++|.++.
T Consensus 135 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 135 SLYDNQITTVA--PGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp ECTTSCCCCBC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEEC--HHHhcCCCCCCEEEecC
Confidence 99999998651 14577888999887764
No 306
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.52 E-value=2.4e-05 Score=80.43 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=82.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+..-- ...+..=-.=+.|+|++|++..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 85 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-CCcCCccCHhHccCCccccee
Confidence 58999999988765311 1111222345789999999998865 6789999999999 789999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+|++..+ ...++.++++|++|.+..+
T Consensus 163 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 163 RLYNNQLKRV--PEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ECCSSCCSCC--CTTTTTTCTTCCEEECCSS
T ss_pred EecCCcCcEe--ChhHhccCCCcCEEECCCC
Confidence 9999999865 1235788999999987654
No 307
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.51 E-value=0.00017 Score=77.47 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=80.0
Q ss_pred EEEeeccccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcC--
Q 004969 46 LEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQR-- 123 (721)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 123 (721)
+.+-=.++.+.....+.+++... ...++.+|+.+-.-.....+.....++..+.+|+.++|.++.++......+.+.
T Consensus 56 L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 134 (362)
T 3goz_A 56 LNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT
T ss_pred EECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHH
Confidence 33333445555555555544332 245666666332222222222333333333667777777776665544443321
Q ss_pred --CccceEeeccccccccccc------ccccc-eeeEEeccccccccccccc----cccccc-ccchhccccccchhhh-
Q 004969 124 --GLMCEVLNLRSSRFRKLNM------IGEFK-RIHTLNLDYSTSLTSFKED----CFSCMP-NLICLSMCETRVGNLW- 188 (721)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~l~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~- 188 (721)
.-.=+.|+|++|+|...+. ++.++ +|++|+|. .|.|+..... .+..+| +|+.|.|.+|+|...=
T Consensus 135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence 1234557777776663221 12333 67777777 5566655542 333443 7777777777766410
Q ss_pred -HHHHHhhcCC-cchhhcccee
Q 004969 189 -TTIAALSKLP-SLAELRFQNW 208 (721)
Q Consensus 189 -~~~~~~~~~~-~~~~~~~~~~ 208 (721)
.-..++.+++ +|++|.+..|
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCCCceEEECcCC
Confidence 0123444433 6666666554
No 308
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.50 E-value=2.7e-05 Score=78.30 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=89.7
Q ss_pred CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccce
Q 004969 71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKR 148 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 148 (721)
..++.+|+.+-.-..+... ++ . --.+|+.++|..+.++.- -.+.+..=-.=+.|+|++|+|..+.- ++.+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~-~~---~-~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG-VF---D-SLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT-TT---T-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCccCccCHH-Hh---h-CccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 6677888854332222211 11 1 125899999999887431 11122222345889999999999865 678999
Q ss_pred eeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 149 IHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
|++|+|. +|.|+.++.. |..||+|+.|.+.+|++..+=. .++.++++|++|.+.
T Consensus 114 L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 114 LKELFMC-CNKLTELPRG-IERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCEEECC-SSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECT
T ss_pred hCeEecc-CCcccccCcc-cccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEee
Confidence 9999999 8899999765 5899999999999999986511 467889999998765
No 309
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.50 E-value=4.3e-05 Score=88.40 Aligned_cols=73 Identities=19% Similarity=0.458 Sum_probs=40.1
Q ss_pred eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+.|+|++|+|..+..++.+++|++|+|. .|.|+.++ -|..||+|+.|.|.+|++..+ .+|.+|++|++|.+..
T Consensus 90 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 90 GWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDIN--GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCG--GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCS
T ss_pred CEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCc--cccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcC
Confidence 4455555555555555555555555555 45555552 255555555555555555544 4555555555555443
No 310
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.50 E-value=0.0019 Score=66.86 Aligned_cols=184 Identities=7% Similarity=-0.025 Sum_probs=113.5
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (721)
Q Consensus 457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~ 536 (721)
.++...+ ++. +..|+.++.|..||.. |+....+.. ....+.++... .++. +..++ +.|..+| .++.....
T Consensus 140 ~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~d-~~g~-l~v~t--~~l~~~d-~~g~~~~~ 209 (330)
T 3hxj_A 140 ATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKT--NDAITSAASIG-KDGT-IYFGS--DKVYAIN-PDGTEKWN 209 (330)
T ss_dssp SCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEEC-TTCC-EEEES--SSEEEEC-TTSCEEEE
T ss_pred eeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEec--CCCceeeeEEc-CCCE-EEEEe--CEEEEEC-CCCcEEEE
Confidence 3444555 555 6668888999999998 877766653 23445556653 3444 44555 7888899 55433111
Q ss_pred ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg 616 (721)
.. .....+.++...+++ .+.+++.++.+..+|. +++.+..+.. ....+..+.+.+++ .+..++.+|
T Consensus 210 ~~---------~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~g 275 (330)
T 3hxj_A 210 FY---------AGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKT-GKRIESSPVIGNTD--TIYFGSYDG 275 (330)
T ss_dssp EC---------CSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTS--CEEEECTTC
T ss_pred Ec---------cCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeC-CCCccccceEcCCC--eEEEecCCC
Confidence 10 111346666775554 5666777788888884 5676666663 33444456666666 466788888
Q ss_pred cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
.+..+|. +++....+.. ....+ ++..+++|...+ |+.+|.+++...+.
T Consensus 276 gl~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 276 HLYAINP-DGTEKWNFET--GSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp EEEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred CEEEECC-CCcEEEEEEc--CCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 8999996 5544333333 22333 566777777554 78899999887763
No 311
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.49 E-value=2.9e-05 Score=81.59 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHhc-ccceEeeccCCchhhHHHHHhh-cCCccceEeeccccccccc------ccccccceeeEEeccc
Q 004969 85 MLTGEFALSLMHAID-QKLRVVDLHDSSFGKDFIRNLS-QRGLMCEVLNLRSSRFRKL------NMIGEFKRIHTLNLDY 156 (721)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~ 156 (721)
.+.+.....+++.++ .+|+.++|.++.+....-..++ ..--.=+.|+|++|+|... ..++.+++|.+|+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls- 153 (310)
T 4glp_A 75 QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA- 153 (310)
T ss_dssp CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE-
T ss_pred cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee-
Confidence 344444444444433 2466666666554432222221 2222334556665555541 111245556666665
Q ss_pred ccccccccccccccccccchhccccccc
Q 004969 157 STSLTSFKEDCFSCMPNLICLSMCETRV 184 (721)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (721)
.|.|+.+...-|..||+|+.|.+.+|++
T Consensus 154 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 154 QAHSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred CCCcchhhHHHhccCCCCCEEECCCCCC
Confidence 5555555555555666666666666554
No 312
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.48 E-value=2e-05 Score=84.84 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=77.6
Q ss_pred ccceEeeccCCchhhHHHHHhhc-CCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQ-RGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
..++.++|+++.+..-.- +.+. .=-.=+.|+|++|+|..+. .++.+++|++|+|+ .|.|+.+..+.|..|++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCE
Confidence 457788888876543111 1111 1223477999999998886 47788999999999 77899999999999999999
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.|.+|+|..+ .-.++.+|++|++|.++.+
T Consensus 117 L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 117 LLLYNNHIVVV--DRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EECCSSCCCEE--CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccEE--CHHHhCCcccCCEEECCCC
Confidence 99999998765 2246778888888876654
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.48 E-value=2.6e-05 Score=82.21 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=54.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+..-....+...--.=+.|+|++|+|..+.-...+++|++|+|+ .|.|+.+... |..+|+|+.|.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC-CCcCCcchhh-hcccCcccEEEC
Confidence 45666666655544322222222112335566666666665544456666666666 5566666555 556666666666
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccc
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.+|++..+ -.++..+++|++|.+.
T Consensus 222 ~~N~l~~l---~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 222 RNNKLVLI---EKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTSCCCEE---CTTCCCCTTCCEEECT
T ss_pred cCCcccch---hhHhhcCCCCCEEEcc
Confidence 66666543 1234555666666544
No 314
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.47 E-value=0.014 Score=60.46 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=113.9
Q ss_pred CeEEEEEeCCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.+..+++.| +++++++.... ..|..++..+++....... ........++.. .++..+++-..+|.|.++|..++.
T Consensus 73 ~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 73 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTE
T ss_pred CceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCc
Confidence 488999999 78877665443 2477778788876543332 222334455543 344445554468888888876532
Q ss_pred CcccccccCcce-eEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CcE--EEEEccccCCCeEEEEEcCCCCc
Q 004969 533 PSIRGMHYGAGT-VTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRR--LQVFADMHKEHINVVKFSNHSPS 607 (721)
Q Consensus 533 ~~~~~~~~~~~~-~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s-~~~--v~~l~~~h~~~V~sI~fsPdg~~ 607 (721)
..+......... ...........+ +++++.++++. ..+.|..||+.. ++. ...+. .......+++.++| +
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG-~ 224 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEG-N 224 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTC-C
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCC-C
Confidence 111000000000 000011123455 67887777766 468899999874 331 12222 11345678999999 7
Q ss_pred EEEEEECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEe---cCCCEEEEEeCCC
Q 004969 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFS---PDDHYLLGKGSGT 659 (721)
Q Consensus 608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fS---pdg~~Lasgs~Dg 659 (721)
++++....+.|.+||.. ++...+...... ..+.+++|. |++..|++++..+
T Consensus 225 l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 225 LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 87777778899999976 433223233322 456689998 8988887776543
No 315
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.46 E-value=0.005 Score=72.79 Aligned_cols=194 Identities=9% Similarity=0.081 Sum_probs=111.8
Q ss_pred CeEEEEEe-CCCCCEEEEEEC-CC----eEEEEECCCC-eEEE-EeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----C
Q 004969 455 RPRQFEYH-PSISCLMVFGTL-DG----EIVVVNHENE-NIVS-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----G 521 (721)
Q Consensus 455 ~V~~lafs-P~dg~~LasGs~-DG----~I~IWdl~tg-~~i~-~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----G 521 (721)
.+...+|| | ||++||.+.. +| +|+++|+.+| +.+. .+. ....++.|+ ++++.|+....| .
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Ws-pDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWG-PDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEEC-SSTTEEEEEEECTTCCEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEe-cCCCEEEEEEECCCCCCC
Confidence 47789999 9 8988886543 23 5999999988 6321 111 113467898 677767666654 3
Q ss_pred eEEEEEcCCCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCc-EE--EEEccccC
Q 004969 522 SLKLYDIRHMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGR-RL--QVFADMHK 593 (721)
Q Consensus 522 tVrIWDi~~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~-~v--~~l~~~h~ 593 (721)
.|.++++.++... ....+. ......++.|+|++..++..+. ...|+++|+.++. .. ..+.....
T Consensus 248 ~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 248 KVWRHVMGKLQSE--------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp EEEEEETTSCGGG--------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred EEEEEECCCCchh--------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 6777888764321 111121 1223567899999998887663 3468899998762 22 44443244
Q ss_pred CCeEEEEEcCCCCcEEEEEECC----CcEEEEECCC-CCcee-EEEecCCCCeEEEEEecCCCEE-EEEeCCCc--EEEE
Q 004969 594 EHINVVKFSNHSPSIFATSSFD----QDVKLWDLRQ-KPIQP-CYTASSSKGNVMVCFSPDDHYL-LGKGSGTS--MFVQ 664 (721)
Q Consensus 594 ~~V~sI~fsPdg~~lLaSgs~D----gtIrIWDlrs-~~~~~-~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~--I~VW 664 (721)
....++.|+..+ .+++....+ ..|..+|+.+ +.... +. .......--.+++.+.+| ++...++. ++++
T Consensus 320 ~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li--~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV--DHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEE--CCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEE--CCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 566667665444 556665554 3566677764 22222 22 222222212344445555 45556664 5566
Q ss_pred Ec
Q 004969 665 SL 666 (721)
Q Consensus 665 Dl 666 (721)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 316
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.45 E-value=6.1e-05 Score=79.19 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=75.6
Q ss_pred cccceEeeccCCchhh--HHHHHhhcCCccceEeecccccccccc---cccccceeeEEecccccccccccccccccccc
Q 004969 99 DQKLRVVDLHDSSFGK--DFIRNLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPN 173 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (721)
-.+|+.++|+++.+.. .....++..--.=+.|+|++|+|.... .+..+.+|++|+|+ .|.|+.++...| |+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~---~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGLKQVPKGLP---AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT-TSCCSSCCSSCC---SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC-CCccChhhhhcc---CC
Confidence 3678888888887762 445555554445677999999888844 44456789999999 788888887666 89
Q ss_pred cchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 174 LICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
|+.|.+.+|++..+ ..+.++++|++|++.
T Consensus 276 L~~L~Ls~N~l~~~----p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN----PSPDELPQVGNLSLK 304 (312)
T ss_dssp EEEEECCSSCCCSC----CCTTTSCEEEEEECT
T ss_pred ceEEECCCCCCCCC----hhHhhCCCCCEEecc
Confidence 99999999998876 347888888888764
No 317
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.45 E-value=0.022 Score=58.29 Aligned_cols=183 Identities=10% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (721)
Q Consensus 496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir 575 (721)
+-.+.+.+++|.|..+.++++...++.|...|.. ++. .. ...+........+++.+++.++++.-.++.+.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-~~-------~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-IR-------TIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-EE-------EEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-EE-------EEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 5556799999995444455567778889888987 332 11 12222334567888876665444444577899
Q ss_pred EEECCCCcE---EEEEc-----cccCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECC-CCCceeEEEe-----cCCC-C
Q 004969 576 LYDINSGRR---LQVFA-----DMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDLR-QKPIQPCYTA-----SSSK-G 639 (721)
Q Consensus 576 lWDl~s~~~---v~~l~-----~~h~~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDlr-s~~~~~~~~~-----~~~~-~ 639 (721)
++++..... +.... .........++|+|.+.+++++.-.+. .|..|+-. ......+... .... .
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998875442 22221 113445689999999854555444444 44455410 1111112110 0111 2
Q ss_pred eEEEEEecCC-CEEEEEeCCCcEEEEEcCCCcccccc------------cCeEEEEECCCC
Q 004969 640 NVMVCFSPDD-HYLLGKGSGTSMFVQSLRGDPFRDFN------------MSILAAYTRPSS 687 (721)
Q Consensus 640 ~vsl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l~~~~------------~~V~~v~fsP~~ 687 (721)
.-.++++|.. ++++.+.....+.++|..|+....+. .....++|.|++
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 2379999954 45555566677888998877533221 156789999999
No 318
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.41 E-value=3.2e-05 Score=85.45 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=27.2
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhcccc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE 181 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (721)
+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|.+.+
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHhhhCcccCEeCCCC
Confidence 445555555555432 4445555555555 4445555555555555555555544
No 319
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.40 E-value=0.00016 Score=79.72 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=85.7
Q ss_pred cceeeEeecCCccccchHHHHHHHHHh--cccceEeeccCCchhhHHHHHhhcCCc----cceEeecccccccc------
Q 004969 72 EIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQRGL----MCEVLNLRSSRFRK------ 139 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------ 139 (721)
.+..+|+. .|.+....+-.+-.++ +.+|+.+||+++.++...+..++..=- .=+.|+|++|+|..
T Consensus 29 ~L~~L~L~---~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLD---DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEE---SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEcc---CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45566664 3446655443333333 467888888888887766666554322 35678888888775
Q ss_pred cccccccceeeEEeccccccccc-----ccccccccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969 140 LNMIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 208 (721)
...++.+++|++|+|. .+.|+. +.+.++.+.++|+.|.+.+|++.... .-..++.++++|++|.+..|
T Consensus 106 ~~~l~~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLS-DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHTTSCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHccCCceeEEECC-CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3455677888888888 555653 44455666778888888888777532 12355677788888876654
No 320
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.39 E-value=0.028 Score=60.74 Aligned_cols=189 Identities=7% Similarity=0.027 Sum_probs=120.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
.+|+.+ ....|+.+++..+.....+. ....+.+++|.+.++.++++-...+.|..+++.+.... .+.
T Consensus 88 ~~l~~~-~~~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------~~~ 154 (386)
T 3v65_B 88 PVLLFA-NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------EVV 154 (386)
T ss_dssp CEEEEE-CBSCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------EEE
T ss_pred ceeEee-cCccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------EEE
Confidence 344443 34568889988665544443 23568899998555556666667789999998874321 111
Q ss_pred eccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLR 624 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlr 624 (721)
.........+++.+.++.++.+. ..+.|.+.++........+.. .......+++.|.++.++++-... +.|..+++.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 11112346778877777776665 467899988875443333332 445678999999775666666555 789999987
Q ss_pred CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
..... .....+-..+..++|+|++..|+.+. ..+.|..+++.|..
T Consensus 234 G~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 234 GSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 279 (386)
T ss_dssp SCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred CCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence 64322 22222333456899998777766654 45678999987643
No 321
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.38 E-value=4.3e-05 Score=78.97 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=35.4
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|++..+.. ++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+- ..++.++++|++|.+
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLL 184 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECC-CCcccccCHhHhccCCCccEEECCCCcccccC--HHHhcCccccCEEEC
Confidence 345555555544422 3444555555555 44455555555555555555555555444320 012444455555544
Q ss_pred c
Q 004969 206 Q 206 (721)
Q Consensus 206 ~ 206 (721)
.
T Consensus 185 ~ 185 (285)
T 1ozn_A 185 H 185 (285)
T ss_dssp C
T ss_pred C
Confidence 3
No 322
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.37 E-value=8.8e-05 Score=80.51 Aligned_cols=133 Identities=18% Similarity=0.155 Sum_probs=96.5
Q ss_pred cceeeEeecCCccccchHHHHHHHHHh---cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccc-----
Q 004969 72 EIEAVDVRSGTSCMLTGEFALSLMHAI---DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMI----- 143 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 143 (721)
.+..+|+ +.|.+....+-.+...+ +..|+.++|.++.++..-++.++..=-.++.|||++|+|...+..
T Consensus 73 ~L~~L~L---s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNL---AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEEC---TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEe---cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566666 44566666655555553 378999999999998887777765434689999999988654322
Q ss_pred --cccceeeEEeccccccccccccccc----ccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969 144 --GEFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 144 --~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 208 (721)
....+|.+|+|. .|.|+......+ ..+|+|+.|.|.+|+|.+.= .-..+|.++++|++|.++.|
T Consensus 150 L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 150 LLHDQCQITTLRLS-NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHSTTCCCCEEECC-SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHhcCCccceeeCC-CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 134779999999 667887544333 67899999999999998631 22467888999999987765
No 323
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.37 E-value=3.1e-05 Score=81.34 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=98.2
Q ss_pred HHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHH--HHHhhcCCc-cceEeecccccc
Q 004969 61 LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDF--IRNLSQRGL-MCEVLNLRSSRF 137 (721)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 137 (721)
+.+++..+..+.++.+|+.+- .+.+.....++.+-..+|+.++|+++.+...+ +..+...++ .=+.|+|++|+|
T Consensus 81 ~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 81 LVGALRVLAYSRLKELTLEDL---KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HHHHHHHHHHSCCCEEEEESC---CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred HHHHHHhcccCceeEEEeeCC---EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 445555555566888998432 22221111111134678999999999887521 222222233 557899999999
Q ss_pred cccc--cccccceeeEEeccccccccc---c-cccccccccccchhccccccchhhhHHHHH-hhcCCcchhhcccee
Q 004969 138 RKLN--MIGEFKRIHTLNLDYSTSLTS---F-KEDCFSCMPNLICLSMCETRVGNLWTTIAA-LSKLPSLAELRFQNW 208 (721)
Q Consensus 138 ~~~~--~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 208 (721)
..+. .++.+++|++|+|. .|.++. + ...|+..+|+|+.|.|.+|++..+=....+ +..+++|++|.+..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred chhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 8774 56789999999999 566553 3 247889999999999999999765333344 478899999987654
No 324
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.35 E-value=0.00032 Score=75.28 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=35.8
Q ss_pred cceEeeccCCchhhHHHHHhhc---C-CccceEeeccccccccccc------cccc-ceeeEEecccccccccccccccc
Q 004969 101 KLRVVDLHDSSFGKDFIRNLSQ---R-GLMCEVLNLRSSRFRKLNM------IGEF-KRIHTLNLDYSTSLTSFKEDCFS 169 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 169 (721)
+|+.++|.++.++......+++ . .-.=+.|+|++|++..... +..+ .+|++|+|. .|.|+......|.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHHH
Confidence 4555555555554433332222 1 1222345555555543331 1222 455555555 4445544433322
Q ss_pred cc-----cccchhccccccch
Q 004969 170 CM-----PNLICLSMCETRVG 185 (721)
Q Consensus 170 ~~-----~~~~~~~~~~~~~~ 185 (721)
.+ ++|+.|.|.+|++.
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCceeEEEccCCcCC
Confidence 21 25555555555554
No 325
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.34 E-value=0.0091 Score=68.76 Aligned_cols=193 Identities=14% Similarity=0.063 Sum_probs=113.8
Q ss_pred EEEeCCCCCEEEEEECC----------------CeEEEEECCCCeEEEEeecCCCCC--------CeEEEEEeeCCC---
Q 004969 459 FEYHPSISCLMVFGTLD----------------GEIVVVNHENENIVSYIPSFGAMN--------SVLGLCWLKKYP--- 511 (721)
Q Consensus 459 lafsP~dg~~LasGs~D----------------G~I~IWdl~tg~~i~~l~~~~H~~--------~V~sl~fsp~d~--- 511 (721)
.++.+ ...++..++.+ +.|.-+|..+|+.+..++...|.. ++. +.....++
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 45667 55677777655 489999999999998888654422 222 22211345
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCcccccccC-----------cc-ee---------------Eec---cCCCeEEEEEecC
Q 004969 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-----------AG-TV---------------TFD---EFDQLTSVHVNSM 561 (721)
Q Consensus 512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-----------~~-~~---------------~~~---~~~~V~sv~~sp~ 561 (721)
..++.++.+|.+.++|..+++......... .+ .+ .+. ....-..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 467778999999999999987643221110 00 00 000 0000123455555
Q ss_pred CCEEEEE---------------------------------e------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969 562 DELFLAS---------------------------------G------YSKNIALYDINSGRRLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 562 ~~~lls~---------------------------------g------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs 602 (721)
.+.+++. + ..|.+.-||+.+++.+..... ..+...-...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~ 481 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMA 481 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC--CCCccCcceE
Confidence 5444432 1 347899999999999988762 2222211122
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG 656 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs 656 (721)
..+ .+++.++.|+.++.||.++++..-.+.+.......-+.|..+|+ |+++.+
T Consensus 482 tag-g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 482 TAG-DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp ETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ecC-CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 234 47777999999999999999765444443222111366777886 444433
No 326
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.34 E-value=0.00017 Score=75.94 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=52.3
Q ss_pred cccceEeeccCC-chhhHHHHHhhcCCccceEeecccc-cccc---cccccccc-eeeEEeccccc-cccc-cccccccc
Q 004969 99 DQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSS-RFRK---LNMIGEFK-RIHTLNLDYST-SLTS-FKEDCFSC 170 (721)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~~~~l~~~~~~-~~~~-~~~~~~~~ 170 (721)
..+|+.++|..+ .++...+..+...=-.=+.|+|+.| .+.. ...++.++ +|++|+|.+|. .++. --...+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 356666666665 3443333333222223345666655 5543 22344555 66666666433 3331 11124445
Q ss_pred ccccchhcccccc-chhhhHHHHHhhcCCcchhhccceee
Q 004969 171 MPNLICLSMCETR-VGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 171 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
+|+|+.|.+.+|. +.+ ....++.++++|++|.+..|-
T Consensus 221 ~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence 5666666666655 332 122355555666666555553
No 327
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.34 E-value=3.9e-05 Score=84.75 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=69.0
Q ss_pred cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+=+.|+|++|++..+..++.+.+|++|+|+ .|.|+.+..+.|..|++|+.|.|.+|++..+- ..++.+|++|++|.+
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLS-GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINL 262 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEEC
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECC-CCccCccChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEEC
Confidence 346799999999999888999999999999 77999999999999999999999999998662 356888999999977
Q ss_pred cee
Q 004969 206 QNW 208 (721)
Q Consensus 206 ~~~ 208 (721)
..+
T Consensus 263 ~~N 265 (440)
T 3zyj_A 263 AHN 265 (440)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 328
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.33 E-value=2.4e-05 Score=78.75 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=74.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccc-ccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR-FRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+|+.++|+++.+..-. ...+..=-.=+.|+|+.|+ +..+. .++.+++|++|+|.++|.|+.+..+.|..||+|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36777777776543210 0011111235779999997 88776 56788999999999669999999999999999999
Q ss_pred hccccccchhhhHHHHHhhcCCcch---hhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLA---ELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 208 (721)
|.|.+|++..+ .++.++++|+ +|.++.+
T Consensus 110 L~l~~n~l~~l----p~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 110 LGIFNTGLKMF----PDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEECCCSC----CCCTTCCBCCSEEEEEEESC
T ss_pred EeCCCCCCccc----cccccccccccccEEECCCC
Confidence 99999988764 4466777776 7776654
No 329
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.32 E-value=6.4e-05 Score=72.01 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=66.9
Q ss_pred cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.-+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+++|+.|.|.+|++..+= -.++.++++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHENKLQSLP--NGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEEECCCCCccccC--HHHhhCCcccCEE
Confidence 44789999999998764 6788999999999 78999999999999999999999999988551 1246788999999
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
++..+
T Consensus 106 ~l~~N 110 (177)
T 2o6r_A 106 ALDTN 110 (177)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 77654
No 330
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.32 E-value=3.7e-05 Score=80.25 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=77.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc---cccccccceeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+|+.++|.++.+....-.. +..=-+=+.|+|++|++.. -..++.+++|++|+|. .+.|+.+....|..+|+|+.
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC-CCCcCCcCHHHhcCCCCCCE
Confidence 57889999887665322111 1111234678999888875 4567788899999999 77888888888999999999
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.|.+|++..+= ..++.++++|++|.+..+
T Consensus 204 L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 204 LNMSHNNFFSLD--TFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTSCCSBCC--SGGGTTCTTCCEEECTTS
T ss_pred EECCCCccCccC--hhhccCcccCCEeECCCC
Confidence 999999887651 124778888999888776
No 331
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.32 E-value=0.0057 Score=70.03 Aligned_cols=203 Identities=8% Similarity=-0.044 Sum_probs=116.5
Q ss_pred CEEEEEEC------CCeEEEEECCCCeEEEEeecCCCC-----------------------------------CCe-EEE
Q 004969 467 CLMVFGTL------DGEIVVVNHENENIVSYIPSFGAM-----------------------------------NSV-LGL 504 (721)
Q Consensus 467 ~~LasGs~------DG~I~IWdl~tg~~i~~l~~~~H~-----------------------------------~~V-~sl 504 (721)
..+++++. +|.|..+|..+|+.+..+...... ..+ ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45566654 799999999999998877642211 000 123
Q ss_pred EEeeCCCCEEEEEeCC----------------CeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC---E
Q 004969 505 CWLKKYPSKLIAGSDN----------------GSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE---L 564 (721)
Q Consensus 505 ~fsp~d~~~LaSgs~D----------------GtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~---~ 564 (721)
++. +....++.++.+ +.|..+|..+++........+.....+. ...++. +....++. .
T Consensus 241 a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 241 AYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp EEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 444 334555555432 3688899988775322111100000000 011221 22223553 4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEcccc-C-----------CCe--------------------------EEEEEcCCCC
Q 004969 565 FLASGYSKNIALYDINSGRRLQVFADMH-K-----------EHI--------------------------NVVKFSNHSP 606 (721)
Q Consensus 565 lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~-----------~~V--------------------------~sI~fsPdg~ 606 (721)
++.++.+|.+.++|..+|+.+..+.-.. . .++ ..++++|++
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~- 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES- 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence 5667789999999999999988765311 0 111 235788877
Q ss_pred cEEEEEE-------------------------------------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969 607 SIFATSS-------------------------------------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 607 ~lLaSgs-------------------------------------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg 649 (721)
.++++.. .+|.|..||..+++..-.+.... ...+......+
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~g 475 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKG 475 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECC
Confidence 3554442 35789999999986543333321 22222233456
Q ss_pred CEEEEEeCCCcEEEEEcC-CCccccc
Q 004969 650 HYLLGKGSGTSMFVQSLR-GDPFRDF 674 (721)
Q Consensus 650 ~~Lasgs~Dg~I~VWDl~-g~~l~~~ 674 (721)
..++.++.||.++.||.+ |+.+..+
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 777789999999999987 5554433
No 332
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.32 E-value=5.8e-05 Score=86.31 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=60.6
Q ss_pred cceEeeccCCchhh---HHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccc
Q 004969 101 KLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (721)
Q Consensus 101 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (721)
.+++.||+.+.+-. +.+.+|. .=++|||++|+|+.+. .++.+.+|++|+|. .|+|+.++.+.|..+++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~----~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT----TCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCC----CCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCC
Confidence 46677777654421 1111111 2356777777777664 35666777777777 5667777777777777777
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.|.+.+|++..+= -.++.+|++|++|.+..
T Consensus 128 ~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 128 KLVAVETNLASLE--NFPIGHLKTLKELNVAH 157 (635)
T ss_dssp EEECTTSCCCCST--TCCCTTCTTCCEEECCS
T ss_pred EEECCCCcCCCCC--hhhhhcCcccCeecccc
Confidence 7777777766541 12356677777776544
No 333
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.31 E-value=7.3e-05 Score=77.22 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=59.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|..+.+..-. .+.+..=-+=+.|+|++|++..+.. ++.+++|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 105 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-CCcccccCHHHhcCccccCEE
Confidence 46777777665543210 0111111123556677666666543 5566667777776 556666666666666777777
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+|++..+- ..++.++++|++|.+..+
T Consensus 183 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 183 LLHQNRVAHVH--PHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ECCSSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccC--HhHccCcccccEeeCCCC
Confidence 77666665441 234556666666665553
No 334
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.31 E-value=4.1e-05 Score=81.79 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=61.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|+++.+..--- +-+..=-.=+.|+|++|++..+. .++.+.+|++|+|. .|.|+.+..+.|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEE
Confidence 456666666655432100 00111123456777777776663 36666777777777 566777776667777777777
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+.+|++..+- ...++.++++|++|++..|
T Consensus 130 ~L~~n~l~~l~-~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 130 NLLGNPYKTLG-ETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECTTCCCSSSC-SSCSCTTCTTCCEEEEEES
T ss_pred ECCCCCCcccC-chhhhccCCCCcEEECCCC
Confidence 77777666431 0123566677777766654
No 335
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.30 E-value=0.00016 Score=78.10 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=73.8
Q ss_pred eccccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHh--cccceEeeccCCchhh------HHHHHhh
Q 004969 50 LEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGK------DFIRNLS 121 (721)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~ 121 (721)
++++.+.++.++.+.+.... .+..+|+. .|.+...-+-.+-.++ ..+|+.++|.++..++ +.++.|.
T Consensus 13 ~~~l~~~~~~~l~~~l~~~~--~L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 13 LDAITTEDEKSVFAVLLEDD--SVKEIVLS---GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp ESSCCSHHHHTTSHHHHHCS--CCCEEECT---TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCC--CccEEECC---CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 34555556666666555442 25555553 3445554443333322 4566666666643321 1222221
Q ss_pred ---cCCccceEeeccccccccc------ccccccceeeEEecccccccccccccccccc-------------cccchhcc
Q 004969 122 ---QRGLMCEVLNLRSSRFRKL------NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCM-------------PNLICLSM 179 (721)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 179 (721)
..--.=+.|+|+.|+|..- ..++.+++|++|+|. .|.|+.....-|..+ |+|+.|.+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1222335566666666551 133455666666666 455553332222222 66666666
Q ss_pred ccccchhh-hHH-HHHhhcCCcchhhcccee
Q 004969 180 CETRVGNL-WTT-IAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++.+- ... ..+|.++++|++|++..|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 66666421 111 134556666666655543
No 336
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.30 E-value=0.12 Score=56.20 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=120.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
.+++.+. ...|+..++........+. ....+.+|+|.+.++.++++-...+.|..+++.+.... .....+.
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVI 154 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CCCEEEE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc---ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----CcceEEE
Confidence 3444444 4679999998765554443 34678899998545555555566788999998763210 0001111
Q ss_pred eccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLR 624 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIWDlr 624 (721)
.........+++.+.++.++.+. ..+.|.+.|+........+.. .......|++.|.++.++.+-.. .+.|...++.
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 11223467888887666666665 468899999886554444432 44568899999976456555433 4789999987
Q ss_pred CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
..... ......-..+..+++++++..|+.+. ..+.|..+|+.|..
T Consensus 234 G~~~~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 234 GVDIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp SCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred CCccE-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 64332 22222334556899999888777665 45689999988643
No 337
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.30 E-value=5e-05 Score=84.16 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=59.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+..-.. +.+.+=-.=+.|+|++|+|..+.. ++.+++|++|+|+ .|.|+.+....|..+|+|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEE
Confidence 467777777765432110 011111234567777777766643 5566677777777 566777666666666666666
Q ss_pred cccc-ccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCE-TRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+.+ +.+..+ ...++.+|++|++|.+..|
T Consensus 177 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 177 DLGELKKLEYI--SEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCCCTTCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred eCCCCCCcccc--ChhhccCCCCCCEEECCCC
Confidence 6666 333322 1124556666666665544
No 338
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.28 E-value=1.6e-05 Score=77.91 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=45.6
Q ss_pred eEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
+.|+|++|+|..+.- ++.+++|++|+|. .|.|+.++ -|..||+|+.|.|.+|++..+ ..+..+.++++|++|++.
T Consensus 73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~-~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~-~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 73 RILSLGRNLIKKIENLDAVADTLEELWIS-YNQIASLS--GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp CEEEEEEEEECSCSSHHHHHHHCSEEEEE-EEECCCHH--HHHHHHHSSEEEESEEECCCH-HHHHHHTTTTTCSEEEEC
T ss_pred CEEECCCCCcccccchhhcCCcCCEEECc-CCcCCcCC--ccccCCCCCEEECCCCcCCch-hHHHHHhcCCCCCEEEec
Confidence 456666666665532 2334566666666 55666664 366666666666666666643 333456666666666655
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.|
T Consensus 149 ~N 150 (198)
T 1ds9_A 149 GN 150 (198)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 339
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.034 Score=59.44 Aligned_cols=194 Identities=9% Similarity=0.153 Sum_probs=117.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee---CCCC---EEEEEe-C--CCeEEEEEcCCCCCcc
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK---KYPS---KLIAGS-D--NGSLKLYDIRHMPPSI 535 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp---~d~~---~LaSgs-~--DGtVrIWDi~~~~~~~ 535 (721)
...+++.....+-+.+||+ +|+.++.++. +.++.|..-| -.+. ++++.. . +++|++|++......+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3456666677888999999 7999888862 4566666543 1122 223333 3 5799999885322222
Q ss_pred cccccCcceeEeccCCCeEEEEE--ecCCC--EEEEEeCCCcEEEEECC-------CCcEEEEEccccCCCeEEEEEcCC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHV--NSMDE--LFLASGYSKNIALYDIN-------SGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~--sp~~~--~lls~g~Dg~IrlWDl~-------s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
.........+ -.....+..+++ ++..+ ++++...+|.+..|++. +.+.+++|. -.+.+..+...+.
T Consensus 114 ~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETT
T ss_pred eeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCC
Confidence 2221100000 001144667777 66444 57777788999999883 346678887 4567888889887
Q ss_pred CCcEEEEEECCCcEEEEECCCC---CceeEEEecCC--CCeE-EEEE--ecCCC-EEEEEe-CCCcEEEEEcC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQK---PIQPCYTASSS--KGNV-MVCF--SPDDH-YLLGKG-SGTSMFVQSLR 667 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~---~~~~~~~~~~~--~~~v-sl~f--Spdg~-~Lasgs-~Dg~I~VWDl~ 667 (721)
. ..|..+-.+.-|..+|.+-. ....+...... ...+ .++. .++|+ ||++++ .+++..|||..
T Consensus 191 ~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 Y-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp T-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred C-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7 57888888866666674421 11223333211 1123 4555 56666 777776 56689999996
No 340
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.27 E-value=5.4e-05 Score=79.06 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
.+|+.++|+.+.+..-. .. ..--.=+.|+|++|+|..+.. ++.+++|++|+|. .|.|+.+..+.|..|++|+.|.
T Consensus 55 ~~L~~L~L~~n~l~~~~--~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQ--VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp TTCCEEECTTSCCCEEE--CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccc--CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEE
Confidence 46777777766543210 00 111233567777777776654 3466777777777 6777777777777777777777
Q ss_pred cccccchhhhHHHHHhhcCCcchhhccce
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
|.+|++..+ ...++.++++|++|.++.
T Consensus 131 L~~N~l~~~--~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 131 LKGNELKTL--PPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CTTSCCCCC--CTTTTTTCTTCCEEECTT
T ss_pred CCCCCCCcc--ChhhcccccCCCEEECCC
Confidence 777777654 123356777777776654
No 341
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.27 E-value=0.091 Score=62.05 Aligned_cols=216 Identities=10% Similarity=0.085 Sum_probs=133.9
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.|.++...+ ++.+ -.|+.++-|..|+..++......... -....|.++... .++..|..|+.++-|..||.
T Consensus 358 ~V~~i~~d~-~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDK-DKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SEEEEEECT-TSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEET
T ss_pred eeEEEEECC-CCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeC
Confidence 589998888 6664 45777777999999877655433211 123678898875 55664667777778999998
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-----cccCCCeEEEEEcC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-----DMHKEHINVVKFSN 603 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-----~~h~~~V~sI~fsP 603 (721)
.+++.... ...... .....|.++...+++...+. +. +.+.+||..+++...... ......|.++...+
T Consensus 435 ~~~~~~~~--~~~~~~---l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 507 (795)
T 4a2l_A 435 NSGQVENF--NQRNSQ---LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS 507 (795)
T ss_dssp TTCCEEEE--CTTTSC---CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred CCCcEEEe--ecCCCC---cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence 87543111 100000 12345888888776665554 44 458899988775433221 11236789999998
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCceeEEEe--c---CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc---
Q 004969 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTA--S---SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--- 674 (721)
Q Consensus 604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~--~---~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--- 674 (721)
+| .+.+ |+. +-+..||..++.. .+.. . .....+ ++..+++|...+++. . .+..||.....+..+
T Consensus 508 ~g-~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~ 580 (795)
T 4a2l_A 508 HK-RLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTT 580 (795)
T ss_dssp TC-CEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGG
T ss_pred CC-CEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCC
Confidence 88 4444 444 4588899877643 2110 0 111233 788889998776544 3 688898765544332
Q ss_pred ----ccCeEEEEECCCC
Q 004969 675 ----NMSILAAYTRPSS 687 (721)
Q Consensus 675 ----~~~V~~v~fsP~~ 687 (721)
...|.++...+++
T Consensus 581 ~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 581 NGLPNNVVYGILEDSFG 597 (795)
T ss_dssp GTCSCSCEEEEEECTTS
T ss_pred CCCchhheEEEEECCCC
Confidence 2357778787777
No 342
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.25 E-value=0.00014 Score=77.12 Aligned_cols=100 Identities=11% Similarity=0.184 Sum_probs=62.7
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
-.+|+.++|.++.+..-. . ...--.=+.|+++.|++..+..++.+++|++|+|. .+.++.+.. |..+|+|+.|.
T Consensus 176 l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDIS--P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG-NNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CTTCSEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEccCCcccccc--c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc-CCccCCCcc--hhcCCCCCEEE
Confidence 356788888776554211 1 11122335577777777766666677777777777 566666654 66777777777
Q ss_pred cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.+|++..+ .++..+++|++|.+..|
T Consensus 250 l~~n~l~~~----~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 250 IGTNQISDI----NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred CCCCccCCC----hhHhcCCCcCEEEccCC
Confidence 777766654 55666777777766654
No 343
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.25 E-value=0.073 Score=63.20 Aligned_cols=198 Identities=8% Similarity=0.027 Sum_probs=122.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+..|+|++.++.++++-...+.|+.+++... .....+. .......+|++.+..++++++-...+.|.+.++.+
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 47899999955566666666788999998742 2222232 22345667777644456666667788999999886
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
.... .+..........|+++|.++.|+.+.. .+.|...++.... ...+....-...+.|++.+.++++
T Consensus 503 ~~~~---------~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 503 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp SSEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred CeEE---------EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeE
Confidence 4321 111122234689999998888877764 3679999987443 334432244678999999877566
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL 666 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl 666 (721)
+++-...+.|..+|+.......+..... -..+..+++. +.+|+.+. ..+.|...+.
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence 6665667889999997654433332211 2234466664 34555444 4567777764
No 344
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.25 E-value=6.4e-05 Score=77.28 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=35.4
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|++..+.. ++.+++|++|+|. .|.|+.+..+.|..|++|+.|.+.+|++..+-. .++.++++|++|.+
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l 131 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNV 131 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEEC
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEECCCCCccccCc--hhcccCCCCCEEEC
Confidence 445555555444432 4444555555555 444555544555555555555555554443311 02444445555443
Q ss_pred c
Q 004969 206 Q 206 (721)
Q Consensus 206 ~ 206 (721)
.
T Consensus 132 ~ 132 (276)
T 2z62_A 132 A 132 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 345
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.23 E-value=0.0099 Score=68.20 Aligned_cols=151 Identities=7% Similarity=-0.016 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCcccccccCcceeEecc-CCCeEEEEEe-cCCC---EEEEEeCCCcEEEEECCCCcEEEEEcccc-CC
Q 004969 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDE-FDQLTSVHVN-SMDE---LFLASGYSKNIALYDINSGRRLQVFADMH-KE 594 (721)
Q Consensus 521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~-~~~V~sv~~s-p~~~---~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~~ 594 (721)
+.|.-+|..+++........+.....+.. ..++. +... .++. .++.++.+|.++++|..+|+.+..+.... ..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 68999999988764332111100000100 01221 1221 3453 56777889999999999999988765311 00
Q ss_pred Ce-------------------------------------------EEEEEcCCCCcEEEEEE------------------
Q 004969 595 HI-------------------------------------------NVVKFSNHSPSIFATSS------------------ 613 (721)
Q Consensus 595 ~V-------------------------------------------~sI~fsPdg~~lLaSgs------------------ 613 (721)
.. ..++++|+...+++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 13456666533333221
Q ss_pred --------------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc
Q 004969 614 --------------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF 674 (721)
Q Consensus 614 --------------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~ 674 (721)
.+|.|.-||+.+++..-..... .....-.....+..++.|+.||.++.||.+ |+.+..+
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 2578999999998654333322 111111122356778889999999999987 6665444
No 346
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.22 E-value=7.3e-05 Score=82.84 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=67.2
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
=+.|+|++|++..+..++.+.+|++|+|+ .|.|+.+..+.|..+|+|+.|.+.+|++..+- ..++.+|++|++|.+.
T Consensus 198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMS-GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLA 274 (452)
T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECT-TSCCSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccccccccccccEEECc-CCcCcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECC
Confidence 46789999999999888899999999999 78899999999999999999999999987652 2567888999999776
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.+
T Consensus 275 ~N 276 (452)
T 3zyi_A 275 HN 276 (452)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 347
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.20 E-value=8.4e-05 Score=80.45 Aligned_cols=129 Identities=17% Similarity=0.227 Sum_probs=87.4
Q ss_pred cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--c
Q 004969 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--M 142 (721)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 142 (721)
+.-+.+..+|+.+..-..+.... +.. -.+||+++|+++.+..- .+..+ -.=+.|+|+.|++..+. .
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~----~~~-l~~L~~L~L~~n~i~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTTT
T ss_pred cccCCceEEEecCCchhhCChhH----hcc-cccCcEEECCCCcccccChhhccCC----CCcCEEECCCCCCCcCCHHH
Confidence 44566777777654444444322 111 25688888888765421 11111 23467888888888873 4
Q ss_pred ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++.+++|++|+|. .+.|+.++.+.|..+|+|+.|.+.+|++..+- ..++.++++|++|.+..+
T Consensus 113 ~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 113 FQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSS
T ss_pred hcCCCCCCEEECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCC
Confidence 6788888888888 77888888888888888888888888887541 234778888888876654
No 348
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.19 E-value=8.5e-05 Score=79.32 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=25.1
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccc-cccccccccchhccccc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCET 182 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (721)
+.|+|++|++..+.. ++.+.+|++|+|. .|.|+.++. ..|..+|+|+.|.+.+|
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhhhccCCCCcEEECCCC
Confidence 344444444444432 3344444444444 444444444 44444444444444444
No 349
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.19 E-value=0.19 Score=59.23 Aligned_cols=221 Identities=11% Similarity=0.096 Sum_probs=136.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-----~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~ 529 (721)
.|+++...+ ++.+. .|+.+| |.+|+..++......... -....|.++... .++ .|-.|+.++-|..|+..
T Consensus 264 ~i~~i~~d~-~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g-~lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 264 YIRSLAMDS-QNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQG-GMWLGTYFGGLNYYHPI 338 (795)
T ss_dssp BEEEEEECT-TSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTS-CEEEEESSSCEEEECGG
T ss_pred eEEEEEEcC-CCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCc-CEEEEECCCCeEEeCCC
Confidence 589998888 66654 455555 899998877655433211 123579999874 444 45667777788889876
Q ss_pred CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-------ccCCCeEEEEEc
Q 004969 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-------MHKEHINVVKFS 602 (721)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-------~h~~~V~sI~fs 602 (721)
+...... ...... .-.....|.++...+++. +.+|+.++-+..||..+++....... .....|.++...
T Consensus 339 ~~~~~~~--~~~~~~-~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRFKNI--RNIPYK-NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSSEEE--CCCTTS-SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccceEE--cCCCCC-CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5432110 000000 001124588888866555 55577777799999887764432211 124678999998
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----
Q 004969 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF----- 674 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~----- 674 (721)
++| .++..|+.++-+..||..+++........ .....+ ++...++|...+++. +.+.+|+.....+..+
T Consensus 415 ~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 415 EKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp TTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTT
T ss_pred CCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEcccccc
Confidence 888 54666777777999999887543221100 112234 788888888776543 5688898764433222
Q ss_pred -----ccCeEEEEECCCC
Q 004969 675 -----NMSILAAYTRPSS 687 (721)
Q Consensus 675 -----~~~V~~v~fsP~~ 687 (721)
...|.++...+++
T Consensus 492 ~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp CCBCCCCCEEEEEECTTC
T ss_pred ccccCCceEEEEEECCCC
Confidence 2457788888777
No 350
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.16 E-value=0.00016 Score=78.24 Aligned_cols=102 Identities=17% Similarity=0.314 Sum_probs=83.0
Q ss_pred ccceEeeccCCchh---hHHHHHhhcCCccceEeecccccccccc--cccccceeeEEeccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFG---KDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (721)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (721)
.+||+++|+++.++ ..++..+. .=++|+|+.|++..+. .++.+++|++|+|. .+.|+.+..+.|..||+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFR----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCC----CCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccc----cCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCC
Confidence 57899999887654 34455543 3577999999999884 57899999999999 788999999999999999
Q ss_pred chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.|.+.+|++..+-. .++.++++|++|.+..|
T Consensus 120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCcCCH--HHhcCCCCCcEEECCCC
Confidence 999999999986522 23678999999988764
No 351
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.15 E-value=0.00014 Score=83.37 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=81.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
..|++++|..+.+.. +.++. .=-.=+.|+|++|+|..| ..++.+++|++|+|+ .|.|+.++ -|..||+|+.|.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD--GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEEE
T ss_pred cCceEEEecCCCCCC--CcCcc-ccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEEE
Confidence 368999999987653 22211 111347799999999988 678899999999999 88999997 699999999999
Q ss_pred cccccchhhhHHHHHhhcCCcchhhccceeeec
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQNWLCC 211 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (721)
+.+|++..+= ...++.+|++|+.|.+..+.-+
T Consensus 515 Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 515 LCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCC-CcHHHhcCCCCCEEEecCCcCC
Confidence 9999998651 1356788999999988776443
No 352
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.13 E-value=0.0001 Score=75.75 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=69.2
Q ss_pred cceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.-+.|+|++|++..+. .++.+++|++|+|. .+.|+.+..+.|..+++|+.|.+.+|++..+ ...++.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCCccCcc--ChhhhcCCccccEE
Confidence 3578999999999887 57889999999999 7799999999999999999999999999866 22468899999999
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
.+..+
T Consensus 106 ~l~~n 110 (276)
T 2z62_A 106 VAVET 110 (276)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 87654
No 353
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.13 E-value=7.9e-05 Score=78.35 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=59.7
Q ss_pred ccceEeeccCCchhhHHHHHhh-cCCccceEeecccccccccc-ccccc-----ceeeEEeccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLS-QRGLMCEVLNLRSSRFRKLN-MIGEF-----KRIHTLNLDYSTSLTSFKEDCFSCMP 172 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (721)
.+|+.++|.++.+....-..++ ..--.=+.|+|++|+|..+. .++.+ ++|++|+|. .|.|+.+..+-|..||
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-SCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-CCCCccchHHHhccCC
Confidence 4677777777655432222221 11123356777777666541 12222 667777777 6667777666677777
Q ss_pred ccchhccccccchhhhHHHHHh--hcCCcchhhcccee
Q 004969 173 NLICLSMCETRVGNLWTTIAAL--SKLPSLAELRFQNW 208 (721)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 208 (721)
+|+.|.|.+|++...-.-..++ .++++|++|.++.|
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 7777777777643221222334 66666766665543
No 354
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.11 E-value=0.00088 Score=72.59 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=99.3
Q ss_pred CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhc----CCccceEeeccccccccccc----
Q 004969 71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQ----RGLMCEVLNLRSSRFRKLNM---- 142 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---- 142 (721)
..++.+|+ +.|.+..+-+..+..++. +|+.++|.++.++..-++.|+. ..-.=+.|+|++|+|...+.
T Consensus 101 ~~L~~L~L---s~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNL---ASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEEC---TTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEe---cCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 47888887 445677777666666654 7999999999998877776653 23445789999999876332
Q ss_pred --ccccceeeEEeccccccccccc----ccccccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969 143 --IGEFKRIHTLNLDYSTSLTSFK----EDCFSCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 143 --~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 208 (721)
+...+.|++|+|. .|.|+... ...+..+++|+.|.|.+|+|.+.- .-..+|.+.++|++|++..|
T Consensus 177 ~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2457889999999 67788654 355677899999999999998632 22356778899999987654
No 355
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.10 E-value=7.3e-05 Score=79.43 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=80.0
Q ss_pred cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-ccccc
Q 004969 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEF 146 (721)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (721)
.....+..+|+.+..-..+..+. .. =.+|+.++|.++.+. ..-..+ ..=-.=+.|+|++|+|..+- -++.+
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l-----~~-l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQA-----FR-LSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCG-----GG-GTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccccceeEEEccCCCchhcChhh-----hh-CCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcC
Confidence 34566777777543322332221 01 236788888777655 211111 11123466888888887664 45677
Q ss_pred ceeeEEecccccccccccccc--------cccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 147 KRIHTLNLDYSTSLTSFKEDC--------FSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++|++|+|.+|+.++.++... |..||+|+.|.+.+|++..+- ..+.+|++|++|.+..|
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNS 216 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESS
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCC
Confidence 888888888777777776643 556888888888888877442 34777888888877654
No 356
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.09 E-value=0.00015 Score=80.57 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=42.5
Q ss_pred eEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
+.|+|++|++..+ ..++.+.+|++|+|. .|.|+.+....|..+|+|+.|.+.+|++..+. ..++.++++|++|++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRL 183 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeC
Confidence 4455555555554 234455556666665 55555555555666666666666666555442 234555666666655
Q ss_pred ce
Q 004969 206 QN 207 (721)
Q Consensus 206 ~~ 207 (721)
+.
T Consensus 184 ~~ 185 (477)
T 2id5_A 184 RH 185 (477)
T ss_dssp ES
T ss_pred CC
Confidence 44
No 357
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.09 E-value=0.00021 Score=79.43 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=76.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+||++||.++.+..-. . ...=-.=+.|+|++|++..+.-++.+.+|++|+|. .+.|+.+.. |..+|+|+.|.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF-NNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECC-CCCCCCChH--HcCCCCCCEEEC
Confidence 57899999887654321 1 11112346799999999988888899999999999 678888865 899999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccce
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+|++..+ .++.+|++|++|++.+
T Consensus 142 ~~n~l~~~----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 142 SSNTISDI----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp EEEEECCC----GGGTTCTTCSEEEEEE
T ss_pred CCCccCCC----hhhccCCcccEeecCC
Confidence 99998876 6788999999998754
No 358
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.07 E-value=0.00014 Score=75.80 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=79.9
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc-ccccccccccccc
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS-FKEDCFSCMPNLI 175 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 175 (721)
-.+|+.++|+++.+..--.-..+..=-+=+.|+|++|++... ..++.+++|++|+|. .+.++. +....|..+|+|+
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA-GNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT-TCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC-CCccccccchhHHhhCcCCC
Confidence 368999999987654321101111112346799999998865 346788999999999 778876 5668899999999
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.|.+|++..+ ...++.++++|++|.+..+
T Consensus 179 ~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 179 FLDLSQCQLEQL--SPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EEECTTSCCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCCcCCc--CHHHhcCCCCCCEEECCCC
Confidence 999999998765 1246788999999998875
No 359
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.07 E-value=0.0001 Score=74.03 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=68.6
Q ss_pred cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhcccc-ccchhhhHHHHHhhcCCcchh
Q 004969 126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAE 202 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 202 (721)
.=+.|+|++|+|..+.- ++.+++|++|+|..+..|+.+..+.|..+|+|+.|.|.+ |++..+ ...++.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i--~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI--DPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE--CTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--CHHHhCCCCCCCE
Confidence 45689999999999864 788999999999944459999999999999999999998 888755 1236778999999
Q ss_pred hcccee
Q 004969 203 LRFQNW 208 (721)
Q Consensus 203 ~~~~~~ 208 (721)
|.+..+
T Consensus 110 L~l~~n 115 (239)
T 2xwt_C 110 LGIFNT 115 (239)
T ss_dssp EEEEEE
T ss_pred EeCCCC
Confidence 988775
No 360
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.07 E-value=0.00016 Score=81.29 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=47.9
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+.......++..=-.=+.|+|++|+|..+.-...+++|.+|+|+ .|.|+.++.+ |..+|+|+.|.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC-CCCCCCCCHh-HcCCCCccEEEe
Confidence 34555555555443322222221111234455555555555444445555555555 4555555544 555555555555
Q ss_pred ccccchhhhHHHHHhhcCCcchhhccc
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.+|++..+= .++..+++|..|.+.
T Consensus 222 s~N~l~~lp---~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 222 RNNKLVLIE---KALRFSQNLEHFDLR 245 (487)
T ss_dssp TTSCCCEEC---TTCCCCTTCCEEECT
T ss_pred cCCcCcccc---hhhccCCCCCEEEcC
Confidence 555555321 124444555555444
No 361
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.06 E-value=0.0001 Score=84.17 Aligned_cols=104 Identities=18% Similarity=0.314 Sum_probs=65.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|++.+|.++.+...+..+.++.--+=+.|||++|++..+. .++.+.+|++|+|. .|+|+++....|..+|+|+.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC-CCcCCCCChhHHhCCCCCCEE
Confidence 456666776665444333333333334466777777777763 46667777777777 667777777777777777777
Q ss_pred ccccccchhhhHHHHHhhcC-Ccchhhccc
Q 004969 178 SMCETRVGNLWTTIAALSKL-PSLAELRFQ 206 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 206 (721)
.+.+|++..+- -.++..+ ++|+.|++.
T Consensus 548 ~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 548 DYSLNHIMTSK--KQELQHFPSSLAFLNLT 575 (635)
T ss_dssp ECTTSCCCBCC--SSCTTCCCTTCCEEECT
T ss_pred ECCCCcCCCCC--HHHHHhhhCcCCEEEee
Confidence 77777776441 1345555 357766654
No 362
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.04 E-value=0.18 Score=58.33 Aligned_cols=196 Identities=7% Similarity=0.027 Sum_probs=126.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+..|+|++.++.++.+-..++.|..+++........+.. + .....++++.+..+++.++-...+.|.+.++.+....
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-G-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-C-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 4789999996666666666789999999875544433331 2 2345677775345556666666789999998764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
. ...........++++|..+.++.+.. .+.|...++..... ..+.. .-...+.+++++++.++.++-
T Consensus 116 ~---------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 116 V---------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-NVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp E---------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SCSSEEEEEEETTTTEEEEEE
T ss_pred E---------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-CCCCcceEEEccccCEEEEEE
Confidence 1 11112234589999998888877763 46788888874433 33332 456788999999875666666
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL 666 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl 666 (721)
...+.|..+|+...... +. ......+..+++.. +..+++-...+.|...|.
T Consensus 185 ~~~~~I~~~d~dG~~~~-v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 185 LDTNLIESSNMLGLNRE-VI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp TTTTEEEEEETTSCSCE-EE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEcCCCCceE-Ee-eccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 77889999999765432 22 22334455777764 333344444677887774
No 363
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.04 E-value=0.077 Score=56.19 Aligned_cols=211 Identities=12% Similarity=0.123 Sum_probs=122.7
Q ss_pred cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC----CC--CCeEEEEEe--eCCCCEEEEEe-------
Q 004969 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG----AM--NSVLGLCWL--KKYPSKLIAGS------- 518 (721)
Q Consensus 454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~----H~--~~V~sl~fs--p~d~~~LaSgs------- 518 (721)
.++-++.|++.++.++++.-..|+|..|+...+..... ...+ .. ..+.+|.|. .+++.++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 36788999995555555555899999999986654433 2211 11 146799993 24456666433
Q ss_pred ------CCCeEEEEEcC---CCCCccc-ccccCcce-eEe-c-cCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcE
Q 004969 519 ------DNGSLKLYDIR---HMPPSIR-GMHYGAGT-VTF-D-EFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRR 584 (721)
Q Consensus 519 ------~DGtVrIWDi~---~~~~~~~-~~~~~~~~-~~~-~-~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~ 584 (721)
.+..|..+|+. +++.... .+...... ... . .......++..++|+..++.+.. +.|..++.... .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999998 5554211 11000000 000 0 01236889999999999988877 88888887633 3
Q ss_pred EEEEc-c----ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CC----CCeEE-EEEecCCCE-
Q 004969 585 LQVFA-D----MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SS----KGNVM-VCFSPDDHY- 651 (721)
Q Consensus 585 v~~l~-~----~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~----~~~vs-l~fSpdg~~- 651 (721)
+..+. . ......+.|+++|+| ++|++....|.+..+|+++.... ..... +. ...-. +.--.+|+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence 33221 1 112246799999999 66666655999999999853220 12221 21 11223 333347877
Q ss_pred EEEEeCCCcEEEEEcCC
Q 004969 652 LLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 652 Lasgs~Dg~I~VWDl~g 668 (721)
+++.+..+.+.+.+-.+
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 44445555555555443
No 364
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.01 E-value=0.00028 Score=67.78 Aligned_cols=87 Identities=11% Similarity=0.160 Sum_probs=68.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
..|+.++|.++.+..-. .+.+..=-.=+.|+|++|+|..+.- ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHHhccccCCCEE
Confidence 57888999887764321 1111111235779999999999854 6789999999999 899999999999999999999
Q ss_pred ccccccchhhh
Q 004969 178 SMCETRVGNLW 188 (721)
Q Consensus 178 ~~~~~~~~~~~ 188 (721)
.|.+|.+.-..
T Consensus 111 ~L~~N~~~c~~ 121 (174)
T 2r9u_A 111 YLYNNPWDCEC 121 (174)
T ss_dssp ECCSSCBCTTB
T ss_pred EeCCCCccccc
Confidence 99999877443
No 365
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.01 E-value=0.00015 Score=79.93 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=57.7
Q ss_pred ccceEeeccCCchhh----HHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc--ccccccccc
Q 004969 100 QKLRVVDLHDSSFGK----DFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS--FKEDCFSCM 171 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~ 171 (721)
.+||.++|+++.+.. +.+..| -.=+.|+|++|+|..+ ..++.+.+|++|+|. .+.|+. +..+.|..+
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGL----SSLIILKLDYNQFLQLETGAFNGLANLEVLTLT-QCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTC----TTCCEEECTTCTTCEECTTTTTTCTTCCEEECT-TSCCBTHHHHSSTTTTC
T ss_pred ccccEEECcCCcccceECccccccc----ccCCEEeCCCCccCccChhhccCcccCCEEeCC-CCCCCccccCcccccCc
Confidence 356677776664431 222222 1235567777766655 245666677777776 556655 444556667
Q ss_pred cccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++|+.|.+.+|++..+- ..+.+.++++|++|.+..+
T Consensus 129 ~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTC
T ss_pred ccCCEEECCCCccCccC-cccccCCCCcccEEeCCCC
Confidence 77777777777665431 0111566666666665443
No 366
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.00 E-value=0.096 Score=55.06 Aligned_cols=183 Identities=8% Similarity=0.042 Sum_probs=115.1
Q ss_pred CCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969 475 DGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (721)
Q Consensus 475 DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~ 552 (721)
...|+.+++.... ....+. ....+.+++|.+.++.++.+-...+.|..++..+.... ..+.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------~~~~~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QNVVVSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------CEEEEECCSC
T ss_pred cCeEEEEECCCCceEEEEEec---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------EEEEcCCCCC
Confidence 4679999998653 222221 12356789998556666666667889999998775321 0111112234
Q ss_pred eEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCcee
Q 004969 553 LTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQP 630 (721)
Q Consensus 553 V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~ 630 (721)
...+++.+.++.++.+. ..+.|.++++........+.. .......+++.|.++.++.+-. ..+.|...++......
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~- 158 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF- 158 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-
Confidence 56788877677666665 467899999875433333322 4556789999997645555542 3578888888754322
Q ss_pred EEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 631 CYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 631 ~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
......-..+..++++|++..|+.+. ..+.|..+++.|..
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence 22222334456899999777776654 46789999988643
No 367
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.99 E-value=0.00018 Score=77.29 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=67.5
Q ss_pred ceEeeccccccccccc--cc-ccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 127 CEVLNLRSSRFRKLNM--IG-EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
-+.|+|++|+|..+.. ++ .+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++..+- -.++..|++|++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEE
Confidence 4789999999998864 44 88999999999 88999999999999999999999999998661 2347889999999
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
.+..+
T Consensus 118 ~L~~N 122 (361)
T 2xot_A 118 LLYNN 122 (361)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 87643
No 368
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.99 E-value=0.00036 Score=76.73 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=59.0
Q ss_pred ceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969 127 CEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (721)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (721)
-+.|+|+.|++..+ ..++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+ ...++.++++|++|.
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQNFLGSI--DSRMFENLDKLEVLD 353 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CGGGGTTCTTCCEEE
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCCccCCc--ChhHhcCcccCCEEE
Confidence 45677777777665 336677888888888 7788888888888888888888888887543 124567788888887
Q ss_pred ccee
Q 004969 205 FQNW 208 (721)
Q Consensus 205 ~~~~ 208 (721)
++.|
T Consensus 354 Ls~N 357 (455)
T 3v47_A 354 LSYN 357 (455)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 369
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.99 E-value=0.00035 Score=73.54 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=54.5
Q ss_pred cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhc
Q 004969 101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
++.+.++.++.+ ...+..+++.--.=+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+.. |..||+|+.|.
T Consensus 11 ~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETTCTTCCEEE
T ss_pred ceeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhhcCCCCEEE
Confidence 455556666555 3344555554445556666666666654 35566666666666 555655543 66666666666
Q ss_pred cccccchhhhHHHHHhhcCCcchhhccce
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+.+|++..+ ..+++|++|.+..
T Consensus 87 Ls~n~l~~l-------~~~~~L~~L~l~~ 108 (317)
T 3o53_A 87 LNNNYVQEL-------LVGPSIETLHAAN 108 (317)
T ss_dssp CCSSEEEEE-------EECTTCCEEECCS
T ss_pred CcCCccccc-------cCCCCcCEEECCC
Confidence 666666543 2335555555443
No 370
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.98 E-value=0.0006 Score=75.01 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=38.8
Q ss_pred ccceEeeccCCchhhHHHHHhhc---CCccceEeecccccccccc-------cccccceeeEEeccccccccccc----c
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQ---RGLMCEVLNLRSSRFRKLN-------MIGEFKRIHTLNLDYSTSLTSFK----E 165 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~----~ 165 (721)
.+|+.++|.++.++...+..+.. .--.=+.|+|+.|++...+ +.+.+++|++|+|. .+.|+... .
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHH
Confidence 35666666665555443222221 1122234555555554432 11234555555555 33555421 1
Q ss_pred cccccccccchhccccccch
Q 004969 166 DCFSCMPNLICLSMCETRVG 185 (721)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (721)
..|..+|+|+.|.+.+|++.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCH
T ss_pred HHHhhCCCcceEECCCCCCc
Confidence 22444555555555555554
No 371
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.93 E-value=0.00021 Score=82.23 Aligned_cols=129 Identities=17% Similarity=0.236 Sum_probs=87.4
Q ss_pred cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--c
Q 004969 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--M 142 (721)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 142 (721)
++-+.+..+|+.+..-..+.... +.. -.+||+++|.++.+..- .+..+ -.=+.|+|++|+|..+. .
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~----~~~-l~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHH----Hcc-CCCCcEEECCCCCCCCCChHHhcCC----CCCCEEECCCCcCCCCCHHH
Confidence 34456666776554433343322 111 25788888888765431 11111 13467889888888876 3
Q ss_pred ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++.+++|.+|+|+ .|.|+.++...|..||+|+.|.+.+|++..+-. .++.+|++|++|.+..|
T Consensus 119 ~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 119 FQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTS
T ss_pred HcCCCCCCEEEee-CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCC
Confidence 6788889999998 778888888888999999999999888875521 25778888888876654
No 372
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.93 E-value=0.00013 Score=81.20 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=61.6
Q ss_pred cceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
+=+.|+|++|++..+. .++.+++|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+ ...++.+|++|++|
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 301 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVL 301 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECC-SSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTBTTCTTCCEE
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECC-CCcCCccChhhccccccCCEEECCCCccceE--CHHHhcCcccCCEE
Confidence 5567888888887776 46678888888888 6778888888888888888888888888764 22467788888888
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
.+..+
T Consensus 302 ~L~~N 306 (477)
T 2id5_A 302 NVSGN 306 (477)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 76554
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.93 E-value=0.00022 Score=84.28 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred eEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 128 EVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 128 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
+.|+|++|+|..|. .++.+.+|.+|+|. .|.|+.|+ ..|..|++|+.|.|.+|++..|= ..+.+|++|++|.+.
T Consensus 227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 227 HALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELP-AEIKNLSNLRVLDLSHNRLTSLP---AELGSCFQLKYFYFF 301 (727)
T ss_dssp CEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCC-GGGGGGTTCCEEECTTSCCSSCC---SSGGGGTTCSEEECC
T ss_pred cEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccC-hhhhCCCCCCEEeCcCCcCCccC---hhhcCCCCCCEEECC
Confidence 44555555554442 23344555555555 44455444 33445555555555555554331 223444445555444
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.|
T Consensus 302 ~N 303 (727)
T 4b8c_D 302 DN 303 (727)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 374
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.92 E-value=0.00026 Score=67.65 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=64.0
Q ss_pred eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
+.|++++|++..+-- +-+.+|++|+|. .|.|+.+..+-|..|++|+.|.|.+|++..+=. .++.+|++|++|.+..
T Consensus 12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GIPTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cCCCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCCCcCccCh--hhccCCCCCCEEECCC
Confidence 468999999888752 346899999999 899999999999999999999999999986622 3467899999997654
No 375
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.018 Score=63.37 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=97.1
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC----cE
Q 004969 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK----NI 574 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg----~I 574 (721)
....|+|.|.+...|+.+...+.|+.+|..++... . ..........++++++++.++++.. ++ .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--~--------~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--T--------VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE--E--------EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE--E--------EecCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 45678887423445555555588889998774321 1 1112244688999999997777664 22 23
Q ss_pred EEEECCCCcEE--EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969 575 ALYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL 652 (721)
Q Consensus 575 rlWDl~s~~~v--~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L 652 (721)
..++.. +... ..+. .......++++|+++.++++-..++.|..||...+.............+..++|+|+|++|
T Consensus 208 ~~~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 208 YILTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EEEeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 334432 3221 2222 2234567889994337777777788999999987643234444343446689999999966
Q ss_pred EEE-eCCCcEEEEEcCC
Q 004969 653 LGK-GSGTSMFVQSLRG 668 (721)
Q Consensus 653 asg-s~Dg~I~VWDl~g 668 (721)
+.+ ...+.|+.++..+
T Consensus 285 yv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEEEEEEET
T ss_pred EEEECCCCEEEEEeCCc
Confidence 555 4567899888664
No 376
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.87 E-value=0.00024 Score=75.15 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
=+.|+|+.|++..+.. +-+.+|.+|+|+ .|.|+.+....|..+|+|+.|.+.+|++..+- ..++.++++|++|.+.
T Consensus 174 L~~L~l~~n~l~~l~~-~~~~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPK-DLPETLNELHLD-HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLD 249 (332)
T ss_dssp CSCCBCCSSBCSSCCS-SSCSSCSCCBCC-SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECC
T ss_pred cCEEECcCCCCCccCc-cccCCCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECC
Confidence 3445555555444322 133567777777 66777777777777777777777777776541 1246677777777665
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.|
T Consensus 250 ~N 251 (332)
T 2ft3_A 250 NN 251 (332)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 377
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.86 E-value=0.00022 Score=81.71 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=40.6
Q ss_pred eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
++|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..+++|+.|.+.+|++..+.. .++.+|++|++|.+
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNV 135 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEEC
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeC
Confidence 44555555555552 34555555555555 445555555555555555555555555544321 12455555555554
Q ss_pred ce
Q 004969 206 QN 207 (721)
Q Consensus 206 ~~ 207 (721)
..
T Consensus 136 ~~ 137 (606)
T 3vq2_A 136 AH 137 (606)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 378
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.85 E-value=0.00031 Score=74.05 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=73.1
Q ss_pred ccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+|+.++|.++.+..- .+..| -.=+.|+|++|++..+.. +-+.+|.+|+|. .+.|+.+....|..||+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE-KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTC----TTCCEEECCSSCCSBCCS-SCCTTCCEEECC-SSCCCBBCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCC----CCCCEEECCCCcCCccCh-hhcccccEEECC-CCcccccCHhHhcCCccccE
Confidence 5688888887765421 12221 234678888888876643 245788888888 77888888888888888888
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.|.+|++...-....++.++++|++|++..|
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 88888888654444567788888888876543
No 379
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.84 E-value=0.052 Score=62.43 Aligned_cols=196 Identities=9% Similarity=0.035 Sum_probs=120.8
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEeecCCCCC---------CeEEEEEeeCCCCE----EEEEeCCCeEEEEEcCC
Q 004969 466 SCLMVFGTL-DGEIVVVNH-ENENIVSYIPSFGAMN---------SVLGLCWLKKYPSK----LIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 466 g~~LasGs~-DG~I~IWdl-~tg~~i~~l~~~~H~~---------~V~sl~fsp~d~~~----LaSgs~DGtVrIWDi~~ 530 (721)
+..+++++. ++.|.-+|. .+|+.+-.+....... ....++..| .+.. ++.++.|+.+.-+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 456777777 899999999 8999988776422110 012344432 3334 88889999999999999
Q ss_pred CCCcccccccCcceeEeccCCCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCC---------
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE--------- 594 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~--------- 594 (721)
++........... ....+.+ -.+ .++.+++++. ++.|+-+|.++|+.+..+......
T Consensus 141 G~~~W~~~~~~~~-----~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 141 GETVWKVENSDIK-----VGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp CCEEEEEECCCGG-----GTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CCEEEeecCCCCC-----ccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 8764332111100 0001111 011 1456666553 799999999999999887631110
Q ss_pred ---------------------------Ce-EEEEEcCCCCcEEEEEECC----------------CcEEEEECCCCCcee
Q 004969 595 ---------------------------HI-NVVKFSNHSPSIFATSSFD----------------QDVKLWDLRQKPIQP 630 (721)
Q Consensus 595 ---------------------------~V-~sI~fsPdg~~lLaSgs~D----------------gtIrIWDlrs~~~~~ 630 (721)
.+ ..+++.+.. .++..+..+ +.|.-+|.++++..-
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W 292 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF 292 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceee
Confidence 00 134566666 466666654 379999999997765
Q ss_pred EEEecCCCC--------eEEEEEe-cCC---CEEEEEeCCCcEEEEEcC-CCc
Q 004969 631 CYTASSSKG--------NVMVCFS-PDD---HYLLGKGSGTSMFVQSLR-GDP 670 (721)
Q Consensus 631 ~~~~~~~~~--------~vsl~fS-pdg---~~Lasgs~Dg~I~VWDl~-g~~ 670 (721)
.+....|.. ++-+... .+| ..++.++.+|.+++.|.+ |+.
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 565554422 2222332 577 567778899999999976 544
No 380
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.84 E-value=0.00025 Score=78.94 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=69.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCC-ccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
.+||.++|+++.+..- ...+ -.=+.|+|++|+|..+. ++.+++|++|+|+ .|.|+.++ |..+|+|+.|.
T Consensus 64 ~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~-~N~l~~l~---~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD-TNKLTKLD---VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC-SSCCSCCC---CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECC-CCcCCeec---CCCCCcCCEEE
Confidence 5788888888766542 1112 23467888888888886 6788888888888 66788874 78888888888
Q ss_pred cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.+|++..+ .+.++++|++|.+..|
T Consensus 134 l~~N~l~~l-----~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 134 CARNTLTEI-----DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CTTSCCSCC-----CCTTCTTCCEEECTTC
T ss_pred CCCCcccee-----ccccCCcCCEEECCCC
Confidence 888888765 3777888888877665
No 381
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.83 E-value=0.11 Score=58.33 Aligned_cols=209 Identities=8% Similarity=0.041 Sum_probs=120.8
Q ss_pred CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCCCeEEEEE-------eeCCCCEEEEEeCCC----
Q 004969 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCW-------LKKYPSKLIAGSDNG---- 521 (721)
Q Consensus 455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~~V~sl~f-------sp~d~~~LaSgs~DG---- 521 (721)
.+..|+|+|. ++.++++-...+.|++.|.+++......... +.......++| . ++++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence 4788999993 4566666666678999999987776555421 12346899999 8 6777666665543
Q ss_pred ---eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-------CCcE------
Q 004969 522 ---SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN-------SGRR------ 584 (721)
Q Consensus 522 ---tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~-------s~~~------ 584 (721)
.|.+.+...... +...........+. ....++++|.++.|+++. .++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~-~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 219 ESPSVYIIKRNADGT-FDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GEEEEEEEECCTTSC-CSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cCceEEEEecCCCCc-eeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 255555333111 11000000111222 346778899777766665 57889999997 5543
Q ss_pred -----EEE-EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--CCCce--eEEEec-CC-------------CCe
Q 004969 585 -----LQV-FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQ--PCYTAS-SS-------------KGN 640 (721)
Q Consensus 585 -----v~~-l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~--~~~~~~-~~-------------~~~ 640 (721)
... +........+.++|+|+|..++++-+..+.|+.+|.. .+... .++... +. ..+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 112 2211345578999999993355665677889986653 32110 111111 11 123
Q ss_pred E-EEEEe-------cCCCEEEEEeCCCcEEEEEcCC
Q 004969 641 V-MVCFS-------PDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 641 v-sl~fS-------pdg~~Lasgs~Dg~I~VWDl~g 668 (721)
. .++.. ++|.++++=...+.|+.++..|
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G 410 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG 410 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC
Confidence 3 34444 4566666666677888887554
No 382
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.00016 Score=81.18 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=72.8
Q ss_pred ccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (721)
.+|+.++|+++.+.. +.+..| -.=++|+|++|+|..+ ..++.+++|++|+|. .|.|+.++.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL----SKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVKISCH---PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC----TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCEEECC---CCCCC
T ss_pred ccccEEECCCCcccccChhhcccc----ccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceeecCcc---ccCCc
Confidence 788888888876643 233333 2356788888888887 457788888888888 6788888776 78888
Q ss_pred chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.|.+.+|++..+- --.++.+|++|++|.+..+
T Consensus 93 ~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 93 KHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp SEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEES
T ss_pred cEEeccCCcccccc-chhhhccCCcceEEEecCc
Confidence 88888888876431 1146778888888877663
No 383
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.82 E-value=0.34 Score=57.52 Aligned_cols=187 Identities=10% Similarity=0.019 Sum_probs=116.4
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969 474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (721)
Q Consensus 474 ~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V 553 (721)
....|+..++..+.....+. ....+.+|+|.+.++.++++-...+.|+.+++...... .....+........
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAP 473 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCC
T ss_pred cccceeEeeccCCcceeeec---CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cceeEEEecCCCCc
Confidence 34568888887665544443 34568899998545556666667788999998763210 00011111122345
Q ss_pred EEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeE
Q 004969 554 TSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPC 631 (721)
Q Consensus 554 ~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~ 631 (721)
..|++.+.++.|+.+. ..+.|.+.++........+.. .......|++.|.++.++++-... +.|...++...... +
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~ 551 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S 551 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-E
Confidence 7888887787777766 468899999985443333332 445688999999864566655443 78999998765332 2
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969 632 YTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP 670 (721)
Q Consensus 632 ~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~ 670 (721)
.....-..+..|++++.+..|+.+. ..+.|...++.|..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 2222234566899998777777664 45678888888654
No 384
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.82 E-value=0.00048 Score=76.70 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=77.8
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+||.+||.++.+..- ..+. .=-.=+.|+|+.|+|..+. ++.+.+|++|+|. .|.|+.++ |..||+|+.|.+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEEC
Confidence 5789999999766531 1111 1123467999999999997 8899999999999 78899984 899999999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++..+. +.++++|++|.+..|
T Consensus 114 ~~N~l~~l~-----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 114 DTNKLTKLD-----VSQNPLLTYLNCARN 137 (457)
T ss_dssp CSSCCSCCC-----CTTCTTCCEEECTTS
T ss_pred CCCcCCeec-----CCCCCcCCEEECCCC
Confidence 999999872 889999999987654
No 385
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.00028 Score=79.94 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=58.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+||++||.++.+..-. .+.+..=-.=+.|+|++|++..+. .++.+.+|++|+|. .+.|+.+....|..+++|+.|
T Consensus 52 ~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCccccccccccEE
Confidence 35667777665433210 011111113355677777666663 45666677777776 556666666667777777777
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+.+|++..+ .--+++.+|++|++|.+..
T Consensus 130 ~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 130 NVAHNLIQSF-KLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp ECCSSCCCCC-CCCGGGGGCTTCCEEECTT
T ss_pred ecCCCcccee-cChhhhcccCCCCEEeCcC
Confidence 7777666531 0013456666666666543
No 386
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.80 E-value=0.00052 Score=76.23 Aligned_cols=99 Identities=9% Similarity=0.244 Sum_probs=78.8
Q ss_pred cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccc
Q 004969 101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (721)
+||.++|+++.+.. +..+. .=-.-++|+|++|++..+.-++.+.+|++|+|. .+.++.+.. |..||+|+.|.+.
T Consensus 47 ~l~~L~l~~~~i~~--l~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS--IDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC--CTTGG-GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc--Ccchh-hhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECC
Confidence 57777777754321 11111 112347899999999999889999999999999 788999876 9999999999999
Q ss_pred cccchhhhHHHHHhhcCCcchhhccceee
Q 004969 181 ETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
+|++..+ .++.+|++|++|.+..|-
T Consensus 121 ~n~l~~~----~~~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 121 NNQITDI----DPLKNLTNLNRLELSSNT 145 (466)
T ss_dssp SSCCCCC----GGGTTCTTCSEEEEEEEE
T ss_pred CCCCCCC----hHHcCCCCCCEEECCCCc
Confidence 9999877 569999999999988764
No 387
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.79 E-value=0.0017 Score=76.27 Aligned_cols=200 Identities=8% Similarity=0.008 Sum_probs=114.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~ 530 (721)
.+..++|++..+.++++-...+.|+.+++.+ ......+. .......+|++.+..+.++++-...+.|.++++.+
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 4678999994444444445568899999875 12211111 11123445666534555556656678899999876
Q ss_pred CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l 608 (721)
....... .........++++|.++.|+.+.. .+.|..+++.. .....+....-...+.|+|+|++.++
T Consensus 485 ~~~~~l~---------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 485 VKRKTLF---------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp CCEEEEC---------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred CceEEEE---------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEE
Confidence 4321100 011123467788887777666653 26788887763 32233321123456789999987677
Q ss_pred EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
+++-+..+.|..+|+.......+..... ...+..+++..+ ..+++....+.|..++..
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp EEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred EEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 7777778899999997543322222111 122335666544 333444556789888864
No 388
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.78 E-value=0.011 Score=68.66 Aligned_cols=227 Identities=10% Similarity=0.039 Sum_probs=123.0
Q ss_pred EEEEeCCCCCEEEEEECCC-----------eEEEEECCCCeEE--EEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeE
Q 004969 458 QFEYHPSISCLMVFGTLDG-----------EIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSL 523 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG-----------~I~IWdl~tg~~i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtV 523 (721)
..++.|.++++++.|+.++ .+.+||..+++.. ..+.. .+.....++++. .++..++.|+. ++.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCce
Confidence 4566665778888887643 6889999887642 22221 223334455665 67888888884 5689
Q ss_pred EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEECCCCcEEEEE----ccccC
Q 004969 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YS-----KNIALYDINSGRRLQVF----ADMHK 593 (721)
Q Consensus 524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~D-----g~IrlWDl~s~~~v~~l----~~~h~ 593 (721)
.+||..+.... ... .+.....-.+++..+++..++.|| .+ ..+.+||..+++....- .....
T Consensus 268 ~~yd~~t~~W~--~~~------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 268 SLYDSSSDSWI--PGP------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 339 (656)
T ss_dssp EEEEGGGTEEE--ECC------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred EEecCcCCcee--ECC------CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence 99998875321 110 011111113444546788888888 34 57999999887644320 00000
Q ss_pred CCeEEEEEcCCCCcEEEEEECC---------CcEEEEECCCCCceeEEEecCC--------CCeEEEEEec-CCCEEEEE
Q 004969 594 EHINVVKFSNHSPSIFATSSFD---------QDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSP-DDHYLLGK 655 (721)
Q Consensus 594 ~~V~sI~fsPdg~~lLaSgs~D---------gtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSp-dg~~Lasg 655 (721)
..- ...+..++ .+++.|+.+ ..+..||..+............ ....++.|.. +++.++.|
T Consensus 340 ~~~-~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G 417 (656)
T 1k3i_A 340 ADK-QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG 417 (656)
T ss_dssp CCT-TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred ccc-cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence 000 01122333 455555444 3578899887653322111110 1122455544 77788888
Q ss_pred eCCC-----------cEEEEEcCCCccc-----cc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 656 GSGT-----------SMFVQSLRGDPFR-----DF--NMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 656 s~Dg-----------~I~VWDl~g~~l~-----~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
+.++ .+.+||.....-. .. ...-..+...|++ .+++.|+..
T Consensus 418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g-------~i~v~GG~~ 476 (656)
T 1k3i_A 418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-------STFITGGQR 476 (656)
T ss_dssp CBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-------CEEEECCBS
T ss_pred CCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC-------CEEEECCcc
Confidence 7532 5677776532211 11 1112234556777 788888754
No 389
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.78 E-value=0.071 Score=62.90 Aligned_cols=156 Identities=9% Similarity=0.027 Sum_probs=90.1
Q ss_pred CeEEEEEeeCCCCEEEEEe-CC----CeEEEEEcCCC-CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--
Q 004969 500 SVLGLCWLKKYPSKLIAGS-DN----GSLKLYDIRHM-PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-- 571 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs-~D----GtVrIWDi~~~-~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-- 571 (721)
.+...+|+|+++++|+-+. .+ .+|+++|+.++ +.... ... ....++.|+|++..|+.+..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~----~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS----GTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE----EECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc----CceeeEEEecCCCEEEEEEECCC
Confidence 6778899735777666443 33 35999999987 52100 010 013467899999888887754
Q ss_pred ---CcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCCCcEEEEEEC--CCcEEEEECCCCCcee--EEEecCCCCe-E
Q 004969 572 ---KNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFATSSF--DQDVKLWDLRQKPIQP--CYTASSSKGN-V 641 (721)
Q Consensus 572 ---g~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~--DgtIrIWDlrs~~~~~--~~~~~~~~~~-v 641 (721)
..|.++++.++. ....+..........+.|+|+|..++++... ...|.++|+.++.... .......... .
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY 323 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence 358888988764 2333332233456788999999444444432 3458888988752222 1112222222 2
Q ss_pred EEEEecCCCEEE-EEeCC----CcEEEEEcC
Q 004969 642 MVCFSPDDHYLL-GKGSG----TSMFVQSLR 667 (721)
Q Consensus 642 sl~fSpdg~~La-sgs~D----g~I~VWDl~ 667 (721)
++.|+. |..|+ .+..+ ..|..+++.
T Consensus 324 s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 324 DVQMHG-TSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp EEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred EEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence 444443 55544 44433 266777775
No 390
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.77 E-value=0.00032 Score=74.37 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=72.9
Q ss_pred ccceEeeccCCchhhHHHHHhh--------cCCccceEeeccccccccc-ccccccceeeEEeccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLS--------QRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSC 170 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 170 (721)
.+|+.++|.++.+-...-..+. +.=-.-+.|+|++|+|..+ ..++.+++|++|+|. .|.++.+... |..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~-~N~l~~l~~~-l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPA-IHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE-SSCCCCCCGG-GGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc-CCCCCcCchh-hcc
Confidence 5789999987433222211111 1122457789998888866 346788889999998 7788888774 888
Q ss_pred ccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 171 MPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
||+|+.|.+.+|++.... -.++.++++|++|.+..|
T Consensus 228 l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTC
T ss_pred CCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCC
Confidence 899999999887765432 235778888888888765
No 391
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.69 E-value=0.43 Score=56.08 Aligned_cols=201 Identities=11% Similarity=0.022 Sum_probs=118.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.|.++...+ ++.+. .|+.++-+..++..+++.............|.++... .++ .|..|+. +-|..||..++...
T Consensus 408 ~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g-~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED-KNK-KIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp BEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC-TTS-EEEEEET-TEEEEEESSSSSCC
T ss_pred ceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC-CCC-CEEEEEC-CceEEEeCCCCeEE
Confidence 588888887 66654 4777777999998877654322111134678888764 344 4555555 56888998765431
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEEcCCCCcEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~fsPdg~~lLaS 611 (721)
......... .....|.++...+++...+ ++.++-+..||..+++.. .+.. .....|.++...++| .+.+
T Consensus 483 ~~~~~~~~~----~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~lWi- 554 (781)
T 3v9f_A 483 HHYDTSNSQ----LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKG-QMWL- 554 (781)
T ss_dssp EEECTTTSS----CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTS-CEEE-
T ss_pred ecccCcccc----cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCC-CEEE-
Confidence 110000000 0124588888877666554 554444778998766543 3331 124578999998888 4444
Q ss_pred EECCCcEEEEECCCCCceeEEEecCC-CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSS-KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP 670 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~ 670 (721)
|+.+|.|..||..+++........+- ...+ ++..+++|.+.+++ .+ .|..++.....
T Consensus 555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~-Gl~~~~~~~~~ 613 (781)
T 3v9f_A 555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT-GISCYITSKKC 613 (781)
T ss_dssp EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS-CEEEEETTTTE
T ss_pred EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC-ceEEEECCCCc
Confidence 44467658899887654322111111 1123 78888888877754 34 46677766443
No 392
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.69 E-value=0.33 Score=51.61 Aligned_cols=230 Identities=10% Similarity=0.093 Sum_probs=124.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE--EEeec-CCCCCCeEEEEEeeCC---CCEEEEE-eCC-----Ce
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV--SYIPS-FGAMNSVLGLCWLKKY---PSKLIAG-SDN-----GS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i--~~l~~-~~H~~~V~sl~fsp~d---~~~LaSg-s~D-----Gt 522 (721)
.++.++|.| ++.++++ ..+|.|++++ +++.. ..+.. ........+|+|+ ++ +..|+.+ ... +.
T Consensus 32 ~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccE
Confidence 488999999 8885554 5679999998 45432 22211 1123568899998 44 3444443 332 67
Q ss_pred EEEEEcCCCCCcccccccCcceeE-ec----cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCC--
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVT-FD----EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSG-- 582 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~-~~----~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s~-- 582 (721)
|..|+...+.. . ....... +. .......++|.|++..+++.+.. |.|.-+|....
T Consensus 107 v~r~~~~~~~~--~---~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 107 VVRLRHLGERG--V---LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp EEEEEECSSCE--E---EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred EEEEEeCCCCc--C---ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 77788764321 0 0000111 11 01123678999988766665431 45666665420
Q ss_pred ----------cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE------EEEECCCCC----------------cee
Q 004969 583 ----------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV------KLWDLRQKP----------------IQP 630 (721)
Q Consensus 583 ----------~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI------rIWDlrs~~----------------~~~ 630 (721)
.....+..++ .....++|+|+++.++++-.....+ +|.-+..+. ..+
T Consensus 182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 0111111113 2356789999433666654433331 233322221 123
Q ss_pred EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-------cccc---ccCeEEEEECCCCCcccccccEEEEe
Q 004969 631 CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-------FRDF---NMSILAAYTRPSSKSEIVKVNLLAST 700 (721)
Q Consensus 631 ~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-------l~~~---~~~V~~v~fsP~~~~~~v~v~lLASg 700 (721)
...+..+..+..++| .+|..+++.-..+.|...++.+.. ...+ ...+..+++.|++ .++++.
T Consensus 261 ~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-------~lyv~~ 332 (352)
T 2ism_A 261 LYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-------ALYVTT 332 (352)
T ss_dssp SEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-------CEEEEE
T ss_pred eEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-------cEEEEE
Confidence 445555555667777 467776666666777777665221 1111 2467889999999 777776
Q ss_pred cCC
Q 004969 701 DHC 703 (721)
Q Consensus 701 s~~ 703 (721)
...
T Consensus 333 ~~~ 335 (352)
T 2ism_A 333 SNR 335 (352)
T ss_dssp CST
T ss_pred eCC
Confidence 543
No 393
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.69 E-value=0.00045 Score=72.83 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred ccceEeeccCCchhhH-HHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKD-FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
.+|+.++|.++.+... .....+..=-.=+.|+|++|++..+.. +.+.+|++|+|+ .+.|+.+....|..||+|+.|.
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECT-TSCCCEECTGGGTTCTTCCEEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cccccCCEEECC-CCcCCccCHHHhcCCCCCCEEE
Confidence 4566666666655321 000111111133567777777666542 234667777777 5567776666777777777777
Q ss_pred cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.+|++..+- ..++.++++|++|.+..|
T Consensus 223 Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 223 LSFNSISAVD--NGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCSSCCCEEC--TTTGGGSTTCCEEECCSS
T ss_pred CCCCcCceeC--hhhccCCCCCCEEECCCC
Confidence 7777666431 124666677777766655
No 394
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.69 E-value=0.00058 Score=78.50 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=80.9
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|.++.+..-- ...+..=-.=+.|+|++|+|..+.- ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus 99 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCCC-HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEE
Confidence 58999999998765411 0111111235789999999998864 6889999999999 789999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.+|++..+ .+..+++|..|.+..+
T Consensus 177 ~L~~N~l~~~-----~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 177 QLSSNRLTHV-----DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECTTSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred ECcCCCCCCc-----ChhhhhhhhhhhcccC
Confidence 9999999876 4778888988877654
No 395
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.68 E-value=0.0018 Score=68.05 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=92.1
Q ss_pred CCcceeeEeecCCcc-ccchHHHHHHHHHhcccceEeeccCC-chhhHHHHHhhcCCc-cceEeecccccc----ccc-c
Q 004969 70 ATEIEAVDVRSGTSC-MLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGL-MCEVLNLRSSRF----RKL-N 141 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~-~ 141 (721)
-..++.+|+. .| .+.++-.-.++... .+|+.++|.++ .+....+..+...=- .=+.|+|+.|++ ..+ .
T Consensus 141 ~~~L~~L~L~---~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 141 NSNLVRLNLS---GCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp CTTCSEEECT---TCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred CCCCCEEECC---CCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 3556666663 33 46655444445443 57999999988 777655555444433 567799998853 222 3
Q ss_pred cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 142 MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.++.+++|++|+|.+|..|+.-.-..|..+|+|+.|.+.+|. .-....+.+|.++|+|++|++..|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 556788999999996655776555678888999999999885 112334467888999999998877
No 396
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.00063 Score=76.35 Aligned_cols=56 Identities=20% Similarity=0.327 Sum_probs=26.0
Q ss_pred ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.+|++|+|+ .|.|+.+++..| .||+|+.|.|.+|++..+=.. ++.++++|++|.+.
T Consensus 421 ~~L~~L~Ls-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 421 PRIKVLDLH-SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLH 476 (520)
T ss_dssp TTCCEEECC-SSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECC
T ss_pred ccCCEEECC-CCcccccchhhh-cCCCCCEEECCCCcCCccCHH--HhccCCcccEEECc
Confidence 344555555 444555544444 455555555555555433111 24445555555443
No 397
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.67 E-value=0.078 Score=56.16 Aligned_cols=165 Identities=8% Similarity=0.069 Sum_probs=103.4
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE---ecCCCEEEEEe-------
Q 004969 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV---NSMDELFLASG------- 569 (721)
Q Consensus 500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~---sp~~~~lls~g------- 569 (721)
---+..|.+.++.++++.-..|+|..||...+........+.. ........+..+.| .+++..+++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3446789744455555555899999999975432111111000 00000113578999 57755555433
Q ss_pred ------CCCcEEEEECC---CCcEEEEEccc-c-----------CCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCC
Q 004969 570 ------YSKNIALYDIN---SGRRLQVFADM-H-----------KEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKP 627 (721)
Q Consensus 570 ------~Dg~IrlWDl~---s~~~v~~l~~~-h-----------~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~ 627 (721)
.+..+..||+. +++.+....-. . ......++..++| +..++++.- +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE
Confidence 15779999999 88776655410 1 1247899999999 888888888 887777776543
Q ss_pred ceeEEEecC----CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969 628 IQPCYTASS----SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR 667 (721)
Q Consensus 628 ~~~~~~~~~----~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~ 667 (721)
......-.. ..+...++++|+|..|++....|.+..+|+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 222221110 1123378999999999988779999999987
No 398
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.66 E-value=0.00056 Score=72.22 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
+.|+|+.|++..+... -+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++...-....++..+ +|++|++.
T Consensus 105 ~~L~L~~n~l~~l~~~-~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPN-LPSSLVELRIH-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCSS-CCTTCCEEECC-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCcc-ccccCCEEECC-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 4455555555544321 23555555555 55555555555555666666666655554332333344444 55555443
No 399
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.65 E-value=0.00067 Score=76.51 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=64.7
Q ss_pred ccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--cccccceeeEEeccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (721)
.+||++||+.+.+..- .+..+ -.=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.+....|..|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcC----CcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCC
Confidence 4677777777655421 11111 12356777777777664 36667777777777 667777777777777777
Q ss_pred chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+.|.+.+|++..+- ...++.+|++|++|++..|
T Consensus 101 ~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 101 KYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEES
T ss_pred cEEECCCCcccccc-hhhhhhccCCccEEECCCC
Confidence 77777777766431 1134666777777766554
No 400
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.65 E-value=0.0008 Score=75.51 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=63.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+.. +. .+..=+.|+|++|+|..+.. +.|++|.+|+|+ +|.|+.+....|..||+|+.|.|
T Consensus 80 ~~L~~L~Ls~N~l~~-----l~-~~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 80 STLRTLDLNNNYVQE-----LL-VGPSIETLHAANNNISRVSC-SRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp TTCCEEECCSSEEEE-----EE-ECTTCCEEECCSSCCCCEEE-CCCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCCCEEEecCCcCCC-----CC-CCCCcCEEECcCCcCCCCCc-cccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEEC
Confidence 456666666655431 11 11334556666666666554 357778888887 77788877777788888888888
Q ss_pred ccccchhhhHHHHHhh-cCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALS-KLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 208 (721)
.+|++..+ ...++. +|++|++|.++.|
T Consensus 152 s~N~l~~~--~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 152 KLNEIDTV--NFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp TTSCCCEE--EGGGGGGGTTTCCEEECTTS
T ss_pred CCCCCCCc--ChHHHhhhCCcccEEecCCC
Confidence 88877653 123343 6777777776655
No 401
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.64 E-value=0.00048 Score=81.35 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=71.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (721)
.+|++++|..+.+. ..-.+++ .--.=+.|+|++|+|..|- -++.+.+|.+|+|+ .|.|+.|++ .|..|++|+.|.
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPA-ELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCS-SGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccCh-hhcCCCCCCEEE
Confidence 57888888887664 2112233 2223467888888888774 36788889999999 777888854 478889999999
Q ss_pred cccccchhhhHHHHHhhcCCcchhhccc
Q 004969 179 MCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
|.+|++..|= ..+.+|++|++|.+.
T Consensus 300 L~~N~l~~lp---~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 300 FFDNMVTTLP---WEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSSCCCCCC---SSTTSCTTCCCEECT
T ss_pred CCCCCCCccC---hhhhcCCCccEEeCC
Confidence 9998887552 237788888888644
No 402
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.64 E-value=0.00029 Score=79.51 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=61.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccc-cccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (721)
.+||+++|+++.+..-.-.. +..=-.=+.|+|++|++..+.- ++.+.+|++|+|+ .|.++.+.. ..|..|++|+.
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT-TCCCSSSCSSCSCTTCTTCCE
T ss_pred CcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEECC-CCcccccchhhhhhccCCccE
Confidence 46777777776554211000 0111123567777777776654 5667777777777 566666543 46777777777
Q ss_pred hcccccc-chhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETR-VGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.+.+|+ +..+ ...++.+|++|++|.++.|
T Consensus 128 L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 128 LRIGNVETFSEI--RRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EEEEESSSCCEE--CTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcccccc--CHhhhhcccccCeeeccCC
Confidence 7777776 3322 0135666777777766643
No 403
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.64 E-value=0.00053 Score=79.69 Aligned_cols=65 Identities=17% Similarity=0.360 Sum_probs=49.0
Q ss_pred ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHH------HHhhcCCcchhhcccee
Q 004969 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI------AALSKLPSLAELRFQNW 208 (721)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 208 (721)
++.+.+|++|+|. .|.|+.+..+.|..+++|+.|.+.+|++..+|... ..+..|++|++|.+..+
T Consensus 476 ~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 476 FQPLRNLTILDLS-NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECC-CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 4456778888888 67888888888888888888888888888776532 23677788888876543
No 404
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.61 E-value=0.0019 Score=62.59 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=47.8
Q ss_pred hcccceEeeccCC-chhhHHHHHhhc---CCccceEeecccccccccc------cccccceeeEEeccccccccccc---
Q 004969 98 IDQKLRVVDLHDS-SFGKDFIRNLSQ---RGLMCEVLNLRSSRFRKLN------MIGEFKRIHTLNLDYSTSLTSFK--- 164 (721)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~--- 164 (721)
-+.+|+.++|.++ .+|.+-++.|+. .--.-+.|+|+.|+|..-+ ++...+.|++|+|. .|.|+.-.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcCCHHHHHH
Confidence 3455555555554 554444443332 1122334555555544321 11222445556665 44555421
Q ss_pred -ccccccccccchhcc--ccccchhhh--HHHHHhhcCCcchhhccc
Q 004969 165 -EDCFSCMPNLICLSM--CETRVGNLW--TTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 165 -~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 206 (721)
.......++|+.|.| .+|.|.+-= .-..+|.+.++|++|.++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 122334455666666 555555310 012344555566666543
No 405
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.60 E-value=0.0005 Score=78.66 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=69.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc---cccccccceeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+|+.++|.++.+....-..+ ..=-+=+.|+|++|++.. -..++.+++|++|+|. .+.|+.+....|..||+|+.
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC-CCcCCccChhhhcccccCCE
Confidence 578888888776544221111 111234667888887765 2345677788888888 66777777777888888888
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
|.+.+|++..+ .-.++.+|++|++|.+..|
T Consensus 502 L~Ls~N~l~~~--~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 502 LNMSHNNLLFL--DSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECCSSCCSCE--EGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCc--CHHHccCCCcCCEEECCCC
Confidence 88888877654 1245667777777777654
No 406
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.00086 Score=80.65 Aligned_cols=103 Identities=9% Similarity=0.181 Sum_probs=72.3
Q ss_pred ccceEeeccCCc-hhh----HHHHHhh---cCCccceEeeccccccccccc---ccccceeeEEeccccccccccccccc
Q 004969 100 QKLRVVDLHDSS-FGK----DFIRNLS---QRGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCF 168 (721)
Q Consensus 100 ~~~~~~~~~~~~-~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 168 (721)
.+|+.++|.++. +.. +.+.+|. ..-..=+.|+|++|+|..+-- ++.+++|++|+|. .|.|+.|+ .|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls-~N~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT-TSCCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC-CCCcccch--hh
Confidence 478888888875 443 2334443 222245678888888887654 7788888888888 67788777 78
Q ss_pred ccccccchhccccccchhhhHHHHHhhcCCc-chhhcccee
Q 004969 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNW 208 (721)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 208 (721)
..||+|+.|.+.+|++..+- +.+.++++ |++|.+..|
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSS
T ss_pred cCCCcceEEECcCCccccch---HHHhhccccCCEEECcCC
Confidence 88888888888888877442 34777777 888877665
No 407
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.57 E-value=0.00046 Score=78.95 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969 128 EVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV 184 (721)
Q Consensus 128 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (721)
+.|+|++|++..+ ..++.+++|++|+|. .+.|+.+....|..+|+|+.|.+.+|++
T Consensus 281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 281 QELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp SEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred CEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 4455555555544 223445555555555 4455555444455555555555555443
No 408
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.57 E-value=0.66 Score=53.51 Aligned_cols=189 Identities=8% Similarity=0.008 Sum_probs=122.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT 546 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~ 546 (721)
.+|+.+ ..+.|+..++.+......++. .....+.+|+|.+.++..+++-..++.|..+++...... .+.
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------~v~ 75 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------HVV 75 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------EEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------EEE
Confidence 344444 467899999987655444443 224568899998555555666667899999998764321 111
Q ss_pred eccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECC
Q 004969 547 FDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS-SFDQDVKLWDLR 624 (721)
Q Consensus 547 ~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg-s~DgtIrIWDlr 624 (721)
.........+++...++.++.+.. .+.|.+.++........+.. .-.....|++.|..+.++.+- +..+.|...++.
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d 154 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence 111123567888777777776654 67899999875433222322 445678999999654555554 235778888887
Q ss_pred CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004969 625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD 669 (721)
Q Consensus 625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~ 669 (721)
......+. ..-..+..+++++++..|+.+. ..+.|...++.|.
T Consensus 155 G~~~~~l~--~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 155 GSERTTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SCSCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEE--CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 65433332 3445666899999877777665 4568889998764
No 409
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.55 E-value=0.00064 Score=71.45 Aligned_cols=103 Identities=9% Similarity=0.121 Sum_probs=48.4
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|..+.+....-..++.---.=+.|+|++|++... ..++.+. |.+|+|. .|.|+......|..+|+|+.|
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS-RNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC-SSEEEECCGGGCCTTSCCSEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc-CCcccCcCCHHHhcCCCCCEE
Confidence 46666666666554222222221111234566666655421 1222222 5555555 445555555555555555555
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.|.+|++... +..+..+++|++|.++.
T Consensus 227 ~L~~N~l~~~---~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 227 HLAKNSLAFD---LGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp ECCSSEECCB---GGGCCCCTTCCEEECCS
T ss_pred ECCCCceeee---cCcccccCCCCEEECcC
Confidence 5555555422 22244455555555544
No 410
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.55 E-value=0.00065 Score=76.85 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=78.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
..+|.+||+++.+..--- .-+.+=-.=++|+|++|++..+. .++.+.+|++|+|. .|.|+.+..+.|..+++|+.|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCccccccc
Confidence 467888888875432100 00111123478999999998875 47889999999999 778999999999999999999
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+.+|++..+-. .++.+|++|++|.+..|
T Consensus 106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 106 VAVETNLASLEN--FPIGHLKTLKELNVAHN 134 (570)
T ss_dssp ECTTSCCCCSTT--CSCTTCTTCCEEECCSS
T ss_pred cccccccccCCC--ccccccccccEEecCCC
Confidence 999999887622 13788999999987764
No 411
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.54 E-value=0.16 Score=59.78 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=127.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.|.++...+ ++.+ -.|+.++-|..|+..++....... .......|.++... .++. |..|+.++-+..+|..+++.
T Consensus 364 ~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 364 VVSSVCDDG-QGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD-SEGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp CEEEEEECT-TSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC-TTSC-EEEEETTEEEEEECSSSCEE
T ss_pred ceEEEEEcC-CCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC-CCCC-EEEEeccCCEEEEcCCCCcE
Confidence 588898887 6664 456656669999987554332111 01234678888864 3444 55577777788888876432
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCCCcEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHSPSIF 609 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg~~lL 609 (721)
. ..... ......|.++...+++. +.+++. +-+..||..+++....... .....|.++...++| .+.
T Consensus 440 ~--~~~~~-----~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lW 509 (781)
T 3v9f_A 440 Q--IIELE-----KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFW 509 (781)
T ss_dssp E--ECCST-----TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEE
T ss_pred E--EeccC-----CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEE
Confidence 1 11000 01224578888765554 555555 5689999887765443321 014678999999888 444
Q ss_pred EEEECCCcEEEEECCCCCceeEEEecC--CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-------ccCeE
Q 004969 610 ATSSFDQDVKLWDLRQKPIQPCYTASS--SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-------NMSIL 679 (721)
Q Consensus 610 aSgs~DgtIrIWDlrs~~~~~~~~~~~--~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-------~~~V~ 679 (721)
.|+.++-+..||..+++... +.... ....+ ++...++|...+++. +|.+..||.....+..+ ...|.
T Consensus 510 -igt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~ 586 (781)
T 3v9f_A 510 -IGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIR 586 (781)
T ss_dssp -EEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCC
T ss_pred -EEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEE
Confidence 45553447778987764322 11111 12233 788888998777544 55548888765444332 12466
Q ss_pred EEEECCCC
Q 004969 680 AAYTRPSS 687 (721)
Q Consensus 680 ~v~fsP~~ 687 (721)
++...+++
T Consensus 587 ~i~~d~~g 594 (781)
T 3v9f_A 587 AISEDKNG 594 (781)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
Confidence 67676666
No 412
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.50 E-value=0.00046 Score=82.74 Aligned_cols=103 Identities=23% Similarity=0.371 Sum_probs=55.6
Q ss_pred ccceEeeccCCchh----hHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc--ccccccccc
Q 004969 100 QKLRVVDLHDSSFG----KDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS--FKEDCFSCM 171 (721)
Q Consensus 100 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~ 171 (721)
.+||++||..+.+. .+.+++|. .=++|+|++|+|..+ ..++.+.+|++|+|. .|.++. ...+.|..+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLP----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCT----TCCEEECTTCCCCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCC----CCCEEECCCCcCcccCHhHccCCcccCEeeCc-CCCCCcccccCcccccc
Confidence 45666666665221 11222221 234566666666665 445566666666666 445554 334456666
Q ss_pred cccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
++|+.|.+.+|.+..+- -...+.+|++|++|.+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence 66666666666665431 1124566666666665543
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.50 E-value=0.00098 Score=64.46 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=65.7
Q ss_pred CCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccc----cccchhccccc-cchhhhHHHHHhh
Q 004969 123 RGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCM----PNLICLSMCET-RVGNLWTTIAALS 195 (721)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (721)
.++.=+.|||+.+.|..- ..+..+++|++|+|.+|..||--.-.-.+.| |+|+.|.+.++ +|.+ ..+++|.
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALH 136 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGG
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHh
Confidence 345557777777766543 3346899999999999999997665556654 68999999985 6886 4678999
Q ss_pred cCCcchhhccceee
Q 004969 196 KLPSLAELRFQNWL 209 (721)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (721)
++|+|+.|....|.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 99999999887763
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.49 E-value=0.0014 Score=67.62 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=62.4
Q ss_pred cceEeecccccccccccc----cccceeeEEecccccccccccc-cccccccccchhccccccchhhhH-----HHHHhh
Q 004969 126 MCEVLNLRSSRFRKLNMI----GEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWT-----TIAALS 195 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 195 (721)
..+.|+|++|+|..|.-+ +.|++|++|+|. +|.|+++.+ +.+..+ +|+.|.|.+|.+..-+. ....+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 578899999999998644 489999999999 999999854 555555 99999999999985221 135688
Q ss_pred cCCcchhhcc
Q 004969 196 KLPSLAELRF 205 (721)
Q Consensus 196 ~~~~~~~~~~ 205 (721)
.+|+|+.|..
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 8999988843
No 415
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.48 E-value=0.0019 Score=73.74 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=60.9
Q ss_pred cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
.=+.|+|+.|++..+.. ++.+++|++|+|. .+.|+.+++. |..||+|+.|.+.+|++..+- -.++.++++|++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLT-ATHLSELPSG-LVGLSTLKKLVLSANKFENLC--QISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECT-TSCCSCCCSS-CCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEecc-CCccCCCChh-hcccccCCEEECccCCcCcCc--hhhhhccCcCCEE
Confidence 45678888888877765 6778888889988 6788888765 677888999999888887552 2457788888888
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
.+..|
T Consensus 331 ~l~~n 335 (606)
T 3t6q_A 331 SIKGN 335 (606)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 87765
No 416
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.46 E-value=0.001 Score=69.88 Aligned_cols=106 Identities=9% Similarity=0.138 Sum_probs=78.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccc-cc-ccccccc-eeeEEecccccccccccccccccccccch
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFR-KL-NMIGEFK-RIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
.+|+.++|..+.+....-..+. .=-+=+.|+|+.|+|. .+ ..++.+. +|++|+|. .|.++......|..++ |+.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSE
T ss_pred CCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccE
Confidence 6899999999877632211111 1124577999999986 33 3456676 89999999 8888877777888887 999
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhccceeee
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNWLC 210 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (721)
|.+.+|++... .-.++.++++|++|.+..+--
T Consensus 202 L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 202 VDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSEEEEC--CGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCc--CCHHHhcCCCCCEEECCCCce
Confidence 99999998754 235678899999999887654
No 417
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.45 E-value=0.00072 Score=76.90 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=33.8
Q ss_pred ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+|++|+|+ .|.|+.|+.+.| .||+|+.|.+.+|++..+-.. ++..+++|++|.+..
T Consensus 450 ~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 450 PKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHD 506 (562)
T ss_dssp TTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCS
T ss_pred CcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecC
Confidence 466666666 456666666666 666666666666666644222 355666666665543
No 418
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.44 E-value=0.0012 Score=76.74 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=39.6
Q ss_pred eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
++|+|++|++..+.- ++.+.+|++|+|. .|.|+.+..+.|..|++|+.|.+.+|++..+ ...++.+|++|++|.+
T Consensus 76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLM-SNSIQKIKNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLL 152 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEEC
T ss_pred CEEECCCCccCccChhhhccCCCCCEEECC-CCccCccChhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEc
Confidence 445555555555542 4555555555555 4455555555555555555555555554432 1123345555555554
Q ss_pred ce
Q 004969 206 QN 207 (721)
Q Consensus 206 ~~ 207 (721)
..
T Consensus 153 ~~ 154 (680)
T 1ziw_A 153 SN 154 (680)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 419
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.43 E-value=0.00065 Score=72.56 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=58.2
Q ss_pred ceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 127 CEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
=+.|+|++|+|+.+.- +....+|.+|+|..++.++.|+++.|..|++|+.|.|.+|++..+=. .++.+|++|+.|
T Consensus 156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l 231 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR 231 (350)
T ss_dssp CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECT
T ss_pred hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhc
Confidence 4679999999998743 34567899999987899999999999999999999999999987621 234444444433
No 420
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.43 E-value=0.00089 Score=76.13 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=58.0
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (721)
.+|+.++|+++.+..--- +-+.+=-.=++|+|++|+|..+ +.++.+++|++|+|. .|.|+.++.. .+++|+.|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT-TSCCCEECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC-CCcCCccCcc---ccccCCEE
Confidence 566777776665432100 0011111345677777777666 335666677777777 5566666665 56777777
Q ss_pred ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+.+|++..+. --+++.+|++|++|.++.
T Consensus 127 ~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 127 DLSFNDFDVLP-VCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp ECCSSCCSBCC-CCGGGGGCTTCCEEEEEC
T ss_pred ECCCCCccccC-chHhhcccCcccEEecCC
Confidence 77777666442 013566666676666554
No 421
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.41 E-value=0.29 Score=56.36 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=117.6
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+..++|++.++.++.+=...+.|..+++..... ...+. .......++++.+..+++.++-...+.|.+.++.+...
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 4789999995555555545578899999875432 22232 22356888998744555666666788999999987433
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS 611 (721)
.. ...........++++|.++.++.+.. .+.|...++. |.....+....-...+.+++++++.+++++
T Consensus 119 ~~---------l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 119 KV---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EE---------EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EE---------EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 11 11112233578899998887777764 3567777776 333333322144578999999977566666
Q ss_pred EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR 667 (721)
Q Consensus 612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~ 667 (721)
-...+.|..+|+.......+.. .....+..+++..+ .|+.+ ...+.|...|..
T Consensus 189 D~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp ETTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESS
T ss_pred eCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEEEEECC
Confidence 6677889999987643222211 11122335666544 44444 456678777764
No 422
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.38 E-value=0.89 Score=48.32 Aligned_cols=231 Identities=11% Similarity=0.098 Sum_probs=125.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeec-CCCCCCeEEEEEeeC---CCCEEEEEeC---C----Ce
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPS-FGAMNSVLGLCWLKK---YPSKLIAGSD---N----GS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~-~~H~~~V~sl~fsp~---d~~~LaSgs~---D----Gt 522 (721)
.++.++|.| ++.++ ++..+|.|++++ .+|+ .+..+.. ........+|+++|. ++.+.++-+. + +.
T Consensus 30 ~P~~ia~~p-dG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLG-GGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEE-TTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcC-CCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 488999999 77754 456679999997 4455 2222211 112356889999843 2444444332 3 56
Q ss_pred EEEEEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCCc---
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSGR--- 583 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s~~--- 583 (721)
|..|+.......... ...... +. .......++|.|++..+++.+.. |.|.-+|.. ++
T Consensus 107 v~r~~~~~~~~~~~~---~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~ 182 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKE---VKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA 182 (354)
T ss_dssp EEEEEECSSSCCEEE---EEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred EEEEEECCCCcCcCc---cEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence 777777653211100 000000 11 11124678999988776665431 455555554 22
Q ss_pred -----EEEEEccccCCCeEEEEEcC-CCCcEEEEEECCCc-EEEEECCCCC----------------ceeEEEe-cCCCC
Q 004969 584 -----RLQVFADMHKEHINVVKFSN-HSPSIFATSSFDQD-VKLWDLRQKP----------------IQPCYTA-SSSKG 639 (721)
Q Consensus 584 -----~v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~Dgt-IrIWDlrs~~----------------~~~~~~~-~~~~~ 639 (721)
....+..++. ....++|+| +| .++++-..... -.|.-+..+. ..+...+ ..+..
T Consensus 183 ~npf~~~~i~a~G~r-np~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHR-NPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp TSSSTTCCEEEECCS-CCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCCCCCCcEEEEccC-CcceEEEeCCCC-CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 0111221133 346799999 55 66655433221 1122122211 1234444 34555
Q ss_pred eEEEEEe-------cCCCEEEEEeCCCcEEEEEcCCC-cc---ccc----ccCeEEEEECCCCCcccccccEEEEec
Q 004969 640 NVMVCFS-------PDDHYLLGKGSGTSMFVQSLRGD-PF---RDF----NMSILAAYTRPSSKSEIVKVNLLASTD 701 (721)
Q Consensus 640 ~vsl~fS-------pdg~~Lasgs~Dg~I~VWDl~g~-~l---~~~----~~~V~~v~fsP~~~~~~v~v~lLASgs 701 (721)
+..++|. .+|.++++.-..+.|...++.+. .. ..+ ...+..+++.|++ .+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-------~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-------GILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-------CEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-------cEEEEEe
Confidence 6678883 57877777766778888887732 11 111 2468889999999 7777664
No 423
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.30 E-value=0.00092 Score=70.96 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=54.2
Q ss_pred ceEeeccc-cccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969 127 CEVLNLRS-SRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
=+.|+|++ |+|..+.. ++.+.+|++|+|. .|.|+.+..+-|..|++|+.|.|.+|++..+=.. ++..+ +|++|
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~-~L~~l 108 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK--TVQGL-SLQEL 108 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST--TTCSC-CCCEE
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCCccceeCHH--HcccC-CceEE
Confidence 46688885 88887753 7778888888888 6688888888888888888888888887755211 12223 37776
Q ss_pred ccc
Q 004969 204 RFQ 206 (721)
Q Consensus 204 ~~~ 206 (721)
.+.
T Consensus 109 ~l~ 111 (347)
T 2ifg_A 109 VLS 111 (347)
T ss_dssp ECC
T ss_pred Eee
Confidence 654
No 424
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.0026 Score=76.55 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=49.7
Q ss_pred cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccc---------cccceeeEEeccccccccccccccc-cc
Q 004969 101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMI---------GEFKRIHTLNLDYSTSLTSFKEDCF-SC 170 (721)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 170 (721)
+|+.++|+.+.+. .+-..++..--.-+.|+|++|+|..+... +.+++|.+|+|. .|.|+.++...+ ..
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls-~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECC-SSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECC-CCCCccchHHhhhcc
Confidence 4555555554443 12222222222234466666555533221 011256666666 456666554443 36
Q ss_pred ccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 171 MPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
||+|+.|.+.+|++..+- ..+..|++|++|.+..+
T Consensus 752 l~~L~~L~Ls~N~L~~lp---~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFP---TQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CTTCCEEECCSSCCSSCC---CGGGGCTTCCEEECCCC
T ss_pred CCCcCEEEeCCCCCCccc---hhhhcCCCCCEEECCCC
Confidence 666666666666665431 23445566666655543
No 425
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.23 E-value=0.0028 Score=75.04 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=61.7
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
=+.|+|+.|++....-.+.+++|++|+|. .+.++..... |..+|+|+.|.+.+|++... ...++.++++|++|.+.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVS-SNNFSTGIPF-LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNIS 255 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECC-SSCCCSCCCB-CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECc-CCcCCCCCcc-cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECC
Confidence 45677777777766666788999999999 5666665444 99999999999999998743 23578899999999988
Q ss_pred eee
Q 004969 207 NWL 209 (721)
Q Consensus 207 ~~~ 209 (721)
.|-
T Consensus 256 ~n~ 258 (768)
T 3rgz_A 256 SNQ 258 (768)
T ss_dssp SSC
T ss_pred CCc
Confidence 763
No 426
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.20 E-value=1.1 Score=51.57 Aligned_cols=198 Identities=7% Similarity=0.031 Sum_probs=120.4
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~ 534 (721)
.+.+++|++.++.++++-...+.|+.++.........+. .......++++.+..+++.++-+..+.|.+.++.+....
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~ 427 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK 427 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE
Confidence 478999999555555565568899999987544433333 223456677775345566666667789999998764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
...........+++++|..+.++.+.. .+.|...++. |.....+....-...+.+++++++.++.++=
T Consensus 428 ---------~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD 497 (619)
T 3s94_A 428 ---------ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGD 497 (619)
T ss_dssp ---------EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ---------EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEE
Confidence 111112345689999998777777653 3567777776 3333333322456788999998774566665
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR 667 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~ 667 (721)
+..+.|..+++.......+.. ..-..+..++...+ +|+.+. ..+.|...+..
T Consensus 498 ~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~ 550 (619)
T 3s94_A 498 AKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKR 550 (619)
T ss_dssp TTTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESS
T ss_pred CCCCEEEEEecCCCceEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcC
Confidence 666889999987654332222 22223334555433 555443 34456555544
No 427
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.20 E-value=0.58 Score=50.03 Aligned_cols=190 Identities=10% Similarity=0.178 Sum_probs=107.0
Q ss_pred EEEEEeCCCCCEEEEE------------ECCCeEEEEECCC--CeEEEEeecCC-----CCCCeEEEEEeeC-CCC-EEE
Q 004969 457 RQFEYHPSISCLMVFG------------TLDGEIVVVNHEN--ENIVSYIPSFG-----AMNSVLGLCWLKK-YPS-KLI 515 (721)
Q Consensus 457 ~~lafsP~dg~~LasG------------s~DG~I~IWdl~t--g~~i~~l~~~~-----H~~~V~sl~fsp~-d~~-~La 515 (721)
-.++..| +|..+++. ..+|.|.++|..+ ++. ..+...+ ..-...++.+.+. ++. +|+
T Consensus 53 EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 53 EDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3466667 55443333 1699999999873 332 2333222 2346778887642 333 344
Q ss_pred EE-eC--CCeEEEEEcCCCCCcccccccCcceeEecc--CCCeEEEEEecCCCEEEEEeC-----------------CCc
Q 004969 516 AG-SD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDE--FDQLTSVHVNSMDELFLASGY-----------------SKN 573 (721)
Q Consensus 516 Sg-s~--DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~--~~~V~sv~~sp~~~~lls~g~-----------------Dg~ 573 (721)
.+ .. +.+|.+|++......... ...+.+ ....+.+.+.++|..+++... .|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLH------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEE------EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEE------EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 44 33 568889888764332111 111221 234788999888776655431 244
Q ss_pred EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEec-CCCE
Q 004969 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSP-DDHY 651 (721)
Q Consensus 574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSp-dg~~ 651 (721)
|..+|. ++. ..+.. .-...+.++|+|++..+.++-+..+.|..||+.. +.......+.....+-.++.++ +|.+
T Consensus 205 vyr~d~--~~~-~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 205 VTYYSP--NDV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEECT--TCC-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred EEEEEC--CeE-EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcE
Confidence 555554 332 22222 3346789999999955556666788999999864 3322222222222222789999 5998
Q ss_pred EEEEeCC
Q 004969 652 LLGKGSG 658 (721)
Q Consensus 652 Lasgs~D 658 (721)
.+++..+
T Consensus 281 wva~~~~ 287 (355)
T 3sre_A 281 WVGCHPN 287 (355)
T ss_dssp EEEEESC
T ss_pred EEEecCC
Confidence 8876544
No 428
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.17 E-value=1.5 Score=45.62 Aligned_cols=215 Identities=9% Similarity=0.010 Sum_probs=110.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~--~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~ 532 (721)
.+.+|.|.+ .+..+++ +.+|.|. .....|+.=..... ......+.+|.|. + + .++.++.+|.|.. ..+.++
T Consensus 37 ~~~~v~~~~-~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~-~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 37 TILDMSFID-RHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-N-EGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp CEEEEEESS-SSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-T-T-EEEEEEETTEEEE-ESSTTS
T ss_pred cEEEEEECC-CCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-C-C-eEEEEECCCeEEE-ECCCCC
Confidence 488899887 6666664 4577653 33343432122211 1123468899886 3 3 3444566775543 222222
Q ss_pred CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (721)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg 612 (721)
......... .....+..+.+.+++. +++++.++.|.. ....|+.-......+...+..+.+.|++ .+++.+
T Consensus 110 -tW~~~~~~~-----~~~~~~~~i~~~~~~~-~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g 180 (327)
T 2xbg_A 110 -SWSQIPLDP-----KLPGSPRLIKALGNGS-AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS 180 (327)
T ss_dssp -SCEECCCCT-----TCSSCEEEEEEEETTE-EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE
T ss_pred -CceECcccc-----CCCCCeEEEEEECCCC-EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE
Confidence 121111000 0112356677655554 445555665422 1222332222222256678999999987 666666
Q ss_pred ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc-------cccCeEEEEEC
Q 004969 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD-------FNMSILAAYTR 684 (721)
Q Consensus 613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~-------~~~~V~~v~fs 684 (721)
...+..+-+|-.......+ ..........+.++++++.+++ +.+|.+++++.. |..... ....+..+.+.
T Consensus 181 ~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 181 SRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 4444444445322222222 2222334447889999887654 457888777433 332211 12347888898
Q ss_pred CCC
Q 004969 685 PSS 687 (721)
Q Consensus 685 P~~ 687 (721)
|.+
T Consensus 259 ~~~ 261 (327)
T 2xbg_A 259 TPN 261 (327)
T ss_dssp SSS
T ss_pred CCC
Confidence 876
No 429
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.16 E-value=1.2 Score=46.55 Aligned_cols=218 Identities=8% Similarity=0.031 Sum_probs=111.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~ 533 (721)
.+.+|.|+| +..++ ++.+|.|.. ....|+.-...... .+.+.+..+.+. .++..++ ++.+|.|.. ..+.++.
T Consensus 81 ~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEM-ITNVGAIYR-TKDSGKN 153 (327)
T ss_dssp EEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEE-ETTEEEE-EETTCCEEE-ESSTTSS
T ss_pred cEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEE-CCCCEEE-EeCCccEEE-EcCCCCC
Confidence 478889987 23444 455665544 33334332222211 233557788876 3444444 445664422 1122221
Q ss_pred cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcE-EEEEC--CCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI-ALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (721)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~I-rlWDl--~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa 610 (721)
.... .......+..+.+.+++..+++ +.+|.+ +-+|- .+.+.+ .......+..+.+.+++ .++
T Consensus 154 -W~~~-------~~~~~~~~~~~~~~~~~~~~~~-g~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g-~~~- 219 (327)
T 2xbg_A 154 -WQAL-------VQEAIGVMRNLNRSPSGEYVAV-SSRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDG-RLW- 219 (327)
T ss_dssp -EEEE-------ECSCCCCEEEEEECTTSCEEEE-ETTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTS-CEE-
T ss_pred -CEEe-------ecCCCcceEEEEEcCCCcEEEE-ECCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCC-CEE-
Confidence 1111 1112245788899887665554 444544 44443 233333 22256678899999988 454
Q ss_pred EEECCCcEEEEECCCCCceeEEEec---CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc------cccCeEE
Q 004969 611 TSSFDQDVKLWDLRQKPIQPCYTAS---SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD------FNMSILA 680 (721)
Q Consensus 611 Sgs~DgtIrIWDlrs~~~~~~~~~~---~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~------~~~~V~~ 680 (721)
.++.+|.+++++...++.-...... .......+.+.+++..++++. +|.++ +... |..... ....+..
T Consensus 220 ~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~ 297 (327)
T 2xbg_A 220 MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYK 297 (327)
T ss_dssp EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCE
T ss_pred EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEE
Confidence 4556788877743222110001111 122344788998888777655 67673 3443 333221 1235677
Q ss_pred EEECCCCCcccccccEEEEecC
Q 004969 681 AYTRPSSKSEIVKVNLLASTDH 702 (721)
Q Consensus 681 v~fsP~~~~~~v~v~lLASgs~ 702 (721)
+.|.+++ .+++.|..
T Consensus 298 v~~~~~~-------~~~~~G~~ 312 (327)
T 2xbg_A 298 ILFFSPD-------QGFILGQK 312 (327)
T ss_dssp EEEEETT-------EEEEECST
T ss_pred EEEECCC-------ceEEEcCC
Confidence 7776655 55665543
No 430
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.10 E-value=0.0039 Score=71.43 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=26.2
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchh
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGN 186 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (721)
-+.|+|++|+|..+. +.+.+|.+|+|. .|.|+.|+. |.. +|+.|.|.+|++..
T Consensus 82 L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~l~~ip~--l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 82 ITVLEITQNALISLP--ELPASLEYLDAC-DNRLSTLPE--LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CSEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC--CCT--TCCEEECCSSCCSC
T ss_pred CCEEECcCCCCcccc--cccCCCCEEEcc-CCCCCCcch--hhc--CCCEEECCCCcCCC
Confidence 344555555555444 445555555555 445555544 222 45555555554443
No 431
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.10 E-value=0.0018 Score=68.69 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=63.8
Q ss_pred eecccc-cccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 130 LNLRSS-RFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
++++++ ++..+--++.+.+|.+|+|+.+|.|+.+..+-|..|++|+.|.|.+|++..+= -.++.+|++|++|.+..
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCCEEeCCC
Confidence 577776 78877668888999999999449999999999999999999999999988652 13678999999997654
No 432
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.09 E-value=0.0017 Score=75.36 Aligned_cols=103 Identities=10% Similarity=0.250 Sum_probs=68.4
Q ss_pred ccceEeeccCCc-hhh-HHHHHhhc-----CCccceEeeccccccccccc---ccccceeeEEecccccccc-ccccccc
Q 004969 100 QKLRVVDLHDSS-FGK-DFIRNLSQ-----RGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLT-SFKEDCF 168 (721)
Q Consensus 100 ~~~~~~~~~~~~-~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~~~~~ 168 (721)
.+|+.++|.++. +.. ..-..++. .--.=+.|+|++|++..+-- ++.+.+|++|+|. .|.++ .++ -|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~-~N~l~g~ip--~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL-YNQLEGKLP--AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECC-SCCCEEECC--CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCc-CCcCccchh--hh
Confidence 467777887775 543 22222222 11234668888888876654 6777788888888 66777 776 67
Q ss_pred ccccccchhccccccchhhhHHHHHhhcCCc-chhhcccee
Q 004969 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNW 208 (721)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 208 (721)
..+++|+.|.+.+|++..+ -+.+.++++ |++|.+..+
T Consensus 350 ~~l~~L~~L~L~~N~l~~l---p~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EEEEEESEEECCSSEEEEC---CTTSEEECTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCccccc---cHhhhhhcccCcEEEccCC
Confidence 7888888888888887733 234677777 777776654
No 433
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.03 E-value=0.12 Score=56.95 Aligned_cols=155 Identities=8% Similarity=0.091 Sum_probs=92.2
Q ss_pred CCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----Cc
Q 004969 499 NSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KN 573 (721)
Q Consensus 499 ~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----g~ 573 (721)
....+|+|.|. +...|+.+...+.|+.+|..++... . ..........+++++++. ++++... ..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~--~--------~~~~~~~P~giavd~dG~-lyVad~~~~~~~~ 207 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD--I--------KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNT 207 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE--E--------ECCCCSCEEEEEECTTCC-EEEEECCSCTTSE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE--E--------eecCCCCccEEEECCCCC-EEEEcCCCCcccc
Confidence 34668898742 3445555554488999998664321 1 111223468999999998 5555432 12
Q ss_pred -EEEEECCCCcE-EEEEccccCCCeEEEEEcC-CCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCC
Q 004969 574 -IALYDINSGRR-LQVFADMHKEHINVVKFSN-HSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDD 649 (721)
Q Consensus 574 -IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg 649 (721)
+...+...+.. ...+. .......++++| +| .++++-..++.|+.+|..++.. ..+...........++|+|+|
T Consensus 208 gv~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC--NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp EEEEECGGGTTCCEEEEE--ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred eEEEEECCCCeecccccc--ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 33333322211 11121 223456788999 55 6777777788999999987654 223333222223369999999
Q ss_pred CEEEEEe-CCCcEEEEEcC
Q 004969 650 HYLLGKG-SGTSMFVQSLR 667 (721)
Q Consensus 650 ~~Lasgs-~Dg~I~VWDl~ 667 (721)
++|+.+. ..+.|+.++..
T Consensus 285 ~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SEEEEEETTTTEEEEEEBC
T ss_pred CEEEEEeCCCCEEEEEeCC
Confidence 9665554 56789998865
No 434
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=95.98 E-value=0.0016 Score=78.15 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=79.7
Q ss_pred hcccceEeeccCCchhhHHHHHhhcCCccceEeeccccc-cccc--ccccccceeeEEeccccccccccccccccccccc
Q 004969 98 IDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR-FRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (721)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (721)
+-.+||++||..+.+..-.-.. +..=-.=++|||+.|. +..+ +.++.+.+|++|+|. .|+|+.+..+.|..+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-TCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-CCcCcccCHhHccCCccc
Confidence 4468999999987653211000 1111234789999884 3343 457888999999999 888999999999999999
Q ss_pred chhccccccchhhhHHHHHhhcCCcchhhccceee
Q 004969 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (721)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (721)
+.|.|.+|++...--...++.+|++|++|.+..|-
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 99999999988632222348899999999988763
No 435
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.94 E-value=0.0034 Score=72.63 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=47.8
Q ss_pred ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
=+.|+|++|+|..+. +.+.+|.+|+|+ .|.|++|+. .+|+|+.|.+.+|++..+ -..+.+|++|+.|.+.
T Consensus 223 L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls-~N~L~~lp~----~~~~L~~L~Ls~N~L~~l---p~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 223 LKELIVSGNRLTSLP--VLPSELKELMVS-GNRLTSLPM----LPSGLLSLSVYRNQLTRL---PESLIHLSSETTVNLE 292 (622)
T ss_dssp CCEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCCSC---CGGGGGSCTTCEEECC
T ss_pred CCEEEccCCccCcCC--CCCCcCcEEECC-CCCCCcCCc----ccccCcEEeCCCCCCCcC---CHHHhhccccCEEEec
Confidence 355677777666655 556777777777 557777765 567777777777777744 1346677777777665
Q ss_pred ee
Q 004969 207 NW 208 (721)
Q Consensus 207 ~~ 208 (721)
.+
T Consensus 293 ~N 294 (622)
T 3g06_A 293 GN 294 (622)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 436
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.90 E-value=0.94 Score=48.02 Aligned_cols=232 Identities=12% Similarity=0.106 Sum_probs=122.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-----CCCCCCeEEEEEeeC---CCCEEEEEeC-------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKK---YPSKLIAGSD------- 519 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-----~~H~~~V~sl~fsp~---d~~~LaSgs~------- 519 (721)
.++.|+|.| +++.+.++...|.|++++.. +.....+.. .........|+|+|. ++.+.++-+.
T Consensus 19 ~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 488999999 88834455678999999853 432211110 012346789999842 3444444332
Q ss_pred CCeEEEEEcCCCCCcccccccCcceeE-ec----cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCC
Q 004969 520 NGSLKLYDIRHMPPSIRGMHYGAGTVT-FD----EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINS 581 (721)
Q Consensus 520 DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~----~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s 581 (721)
...|..|+.......+... ..... +. ....-..+.|.|++..+++.+.. |.|.-+|...
T Consensus 97 ~~~v~r~~~~~~~~~~~~~---~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDF---RTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEECTTSSBEEEE---EEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred eeEEEEEEECCCCCCCCce---EEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 2356666665432111100 00000 00 01113578999988665555432 4566667653
Q ss_pred Cc------------EEEEEccccCCCeEEEEEcC-CCCcEEEEEEC-CCcEEEEECCCC---------------------
Q 004969 582 GR------------RLQVFADMHKEHINVVKFSN-HSPSIFATSSF-DQDVKLWDLRQK--------------------- 626 (721)
Q Consensus 582 ~~------------~v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~-DgtIrIWDlrs~--------------------- 626 (721)
.- ....+..++ .....++|+| +| .++++-.. ++.=+|.-+..+
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 20 111222113 3467899999 55 55554332 222223222211
Q ss_pred --------CceeEEEecCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEEcCCCc-c------cccccCeEEEEEC
Q 004969 627 --------PIQPCYTASSSKGNVMVCFSP-------DDHYLLGKGSGTSMFVQSLRGDP-F------RDFNMSILAAYTR 684 (721)
Q Consensus 627 --------~~~~~~~~~~~~~~vsl~fSp-------dg~~Lasgs~Dg~I~VWDl~g~~-l------~~~~~~V~~v~fs 684 (721)
...+...+..+..+..++|.. +|.++++.-..+.|...++.+.. . ......+..+++.
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 012334444455566777764 57777777677788777776422 1 1112478899999
Q ss_pred CCCCcccccccEEEEe
Q 004969 685 PSSKSEIVKVNLLAST 700 (721)
Q Consensus 685 P~~~~~~v~v~lLASg 700 (721)
|++ .+.++.
T Consensus 332 pdG-------~lyv~t 340 (353)
T 2g8s_A 332 PDG-------YLYVLT 340 (353)
T ss_dssp TTS-------CEEEEE
T ss_pred CCC-------cEEEEE
Confidence 999 666653
No 437
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.87 E-value=0.0033 Score=69.75 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=71.7
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|+.++|.++.+.. +..---.-+.|+|++|++..+.-++.+.+|++|+|+ .|.|+.++. .+++|+.|.+
T Consensus 111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~----~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPD----LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred CCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCC----CcccccEEEC
Confidence 688888888876542 111112567799999988888778888889999998 668888764 3468999999
Q ss_pred ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.+|++..+ .++.+|++|++|.+..|
T Consensus 181 ~~n~l~~l----~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 181 GNNQLEEL----PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CSSCCSSC----CCCTTCTTCCEEECCSS
T ss_pred cCCcCCcC----ccccCCCCCCEEECCCC
Confidence 99988875 46888888888887765
No 438
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.74 E-value=0.004 Score=69.11 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=46.5
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|++++|.++.+.. +-++ ..=-+=+.|+|++|++..+. ..+.+|++|+|. .+.++.+++ |..||+|+.|.+
T Consensus 131 ~~L~~L~L~~n~l~~--lp~~-~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--Cccc-CCCCCCCEEECCCCcCcccC--CCcccccEEECc-CCcCCcCcc--ccCCCCCCEEEC
Confidence 577888887776543 2111 11113456777777766543 234567777777 556666652 666777777777
Q ss_pred ccccchh
Q 004969 180 CETRVGN 186 (721)
Q Consensus 180 ~~~~~~~ 186 (721)
.+|++..
T Consensus 203 ~~N~l~~ 209 (454)
T 1jl5_A 203 DNNSLKK 209 (454)
T ss_dssp CSSCCSS
T ss_pred CCCcCCc
Confidence 6666653
No 439
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.71 E-value=0.16 Score=56.89 Aligned_cols=160 Identities=12% Similarity=0.064 Sum_probs=96.4
Q ss_pred CeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE-------ecCCCEEEEEeCC
Q 004969 500 SVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV-------NSMDELFLASGYS 571 (721)
Q Consensus 500 ~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~-------sp~~~~lls~g~D 571 (721)
....|+|.|. .++++++....+.|++.|..++...... .... ........++| ++++..++++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~-----~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINT-----IPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTT-----SSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCc-----cccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 4568898853 3444444444467888888774431110 0000 01124688999 9999977777654
Q ss_pred C-------cEEEEECCC-CcEE-----EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------CCCc---
Q 004969 572 K-------NIALYDINS-GRRL-----QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-------QKPI--- 628 (721)
Q Consensus 572 g-------~IrlWDl~s-~~~v-----~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-------s~~~--- 628 (721)
+ .|.+++... +... ..+.. . .....++++|+++.++++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeecc-C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 3 266776443 2221 22221 1 2345778999665788888888999999987 4432
Q ss_pred ---------eeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969 629 ---------QPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR 667 (721)
Q Consensus 629 ---------~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~ 667 (721)
..++.......+..++|+|+|++|+.+ ...+.|+.++..
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 123444333445589999999965555 456688886654
No 440
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.70 E-value=0.0036 Score=72.53 Aligned_cols=82 Identities=7% Similarity=0.208 Sum_probs=39.5
Q ss_pred ceEeeccCCchhhHHHHHhhcCCc-cceEeeccccccccc--cccc-------ccceeeEEecccccccccccccccccc
Q 004969 102 LRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKL--NMIG-------EFKRIHTLNLDYSTSLTSFKEDCFSCM 171 (721)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (721)
|+.++|.++.+. .+-..+....+ .=+.|+|++|+|... ..++ ...+|++|+|. .|.|+.++...|..|
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFSTG 456 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHTT
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHccC
Confidence 666666665554 11111111100 234556666555442 1122 33455555555 455555555555555
Q ss_pred cccchhccccccch
Q 004969 172 PNLICLSMCETRVG 185 (721)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (721)
|+|+.|.+.+|++.
T Consensus 457 ~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 457 SPLSSINLMGNMLT 470 (636)
T ss_dssp CCCSEEECCSSCCS
T ss_pred CCCCEEECCCCCCC
Confidence 55555555555555
No 441
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.58 E-value=0.023 Score=66.70 Aligned_cols=185 Identities=9% Similarity=0.016 Sum_probs=104.7
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (721)
.+.|++.++.+......+. ....+.+|+|.+..+.++++-...+.|+.+++.+.... ......+ ........
T Consensus 385 ~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i-~~~~~~P~ 456 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVI-SRDIQAPD 456 (699)
T ss_dssp TTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBC-CSCC--CC
T ss_pred ccceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEE-eCCCCCcc
Confidence 4578888888766544433 22456788997434444444456688999998751100 0000000 00111235
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeEE
Q 004969 555 SVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPCY 632 (721)
Q Consensus 555 sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~~ 632 (721)
.+++.+.++.|+.+. ..+.|.++++........+.. .......|++.|.++.++++-... +.|.++++...... +.
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l 534 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL 534 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE
Confidence 567765555555554 468899999875543333322 334567889999764556554333 77888887653221 22
Q ss_pred EecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 004969 633 TASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGD 669 (721)
Q Consensus 633 ~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~ 669 (721)
....-..+..++|+|++..|+.+ +..+.|.++++.|.
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11122234479999976655544 45678999998753
No 442
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.43 E-value=0.0037 Score=72.37 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=42.3
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (721)
.+|++++|.++.+.. +...=..=+.|+|++|+|..+.. .+.+|.+|+|. .|.|+.|+.. +|+|+.|.+
T Consensus 81 ~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~-~N~l~~lp~~----l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-----LPVLPPGLLELSIFSNPLTHLPA--LPSGLCKLWIF-GNQLTSLPVL----PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSC-----CCCCCTTCCEEEECSCCCCCCCC--CCTTCCEEECC-SSCCSCCCCC----CTTCCEEEC
T ss_pred CCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCCcCCCCCC--CCCCcCEEECC-CCCCCcCCCC----CCCCCEEEC
Confidence 466666666665431 11111233456666666666544 45666666666 5556666543 366666666
Q ss_pred ccccchhh
Q 004969 180 CETRVGNL 187 (721)
Q Consensus 180 ~~~~~~~~ 187 (721)
.+|++..+
T Consensus 149 s~N~l~~l 156 (622)
T 3g06_A 149 SDNQLASL 156 (622)
T ss_dssp CSSCCSCC
T ss_pred cCCcCCCc
Confidence 66666544
No 443
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.42 E-value=0.013 Score=66.33 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=29.9
Q ss_pred cceeeEEeccccccccccccccc-ccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 146 FKRIHTLNLDYSTSLTSFKEDCF-SCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
+++|++|+|. ++.|+...-..+ ..+|+|+.|.+.+|++. -+.-.+.+.++++|++|.++.|
T Consensus 455 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 455 AKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-DKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCC-HHHHHHTGGGGGGSSEEEEESS
T ss_pred chhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCc-HHHHHHHHHhCCCCCEEeeeCC
Confidence 4455666665 333443322222 44566666666666652 1121222334666666665555
No 444
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.38 E-value=0.53 Score=47.96 Aligned_cols=190 Identities=15% Similarity=0.177 Sum_probs=99.1
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCC
Q 004969 465 ISCLMVFGTLD-----GEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHM 531 (721)
Q Consensus 465 dg~~LasGs~D-----G~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~ 531 (721)
++.+++.|+.+ ..+.+||..+++ ....-......... +++. .++..++.|+.+ ..+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT--LGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE--ECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 45777777755 468999998766 43332211111122 2222 255666677654 36788888764
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHS 605 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg 605 (721)
.-.. +. .......-.+++. .++..++.||.+ ..+.+||+.+.+-...-.... ......+.+ ++
T Consensus 139 ~W~~--~~------~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 207 (301)
T 2vpj_A 139 QWSM--LG------DMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND 207 (301)
T ss_dssp EEEE--EE------ECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred eEEE--CC------CCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC
Confidence 4211 10 1111111112222 255566666643 468999998876543311101 112222333 44
Q ss_pred CcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCc
Q 004969 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGDP 670 (721)
Q Consensus 606 ~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~~ 670 (721)
.+++.|+.+ ..+.+||+.+.+...+...+......+++. -+++.++.|+.+ ..+.+||.....
T Consensus 208 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 208 -HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 677888764 468999999876544432222211112222 267777777655 356788877543
No 445
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.26 E-value=0.023 Score=64.44 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCc-hhhHHHHHhhcCCccceEeecccccccccc------ccc
Q 004969 72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSS-FGKDFIRNLSQRGLMCEVLNLRSSRFRKLN------MIG 144 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 144 (721)
.++.+|+.. |.+.++-.-.+-+....+|+..+|.... +....+..+...=-.=+.|+|+.|++...+ +..
T Consensus 113 ~L~~L~L~~---~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 113 QLKSVHFRR---MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TCCEEEEES---CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCeEEeec---cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 455555532 2455544444444444456776666544 333334433322222355677766654432 334
Q ss_pred ccceeeEEecccccccccccc----cccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969 145 EFKRIHTLNLDYSTSLTSFKE----DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (721)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (721)
.+++|++|+|. .+.++.+.. .-+..+|+|+.|.+.++.+..+- ..+.++++|++|.+..
T Consensus 190 ~~~~L~~L~L~-~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---GFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECT-TCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---HHHHHCTTCCEEEECB
T ss_pred cCCCccEEEee-ccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---HHHhhhhHHHhhcccc
Confidence 56777777776 555653332 22445677777777777766542 4556667777776554
No 446
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.24 E-value=0.57 Score=47.82 Aligned_cols=188 Identities=13% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCc
Q 004969 465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPS 534 (721)
Q Consensus 465 dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~ 534 (721)
++.+++.|+.+ ..+.+||..+.+....-......... +++. .++..++.|+.++ .+.+||..+..-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 45777777754 36889999887654432221111122 2222 2566777777553 5777887764321
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------KNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS 605 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg 605 (721)
.... ......-.+++. -++..++.||.+ ..+.+||+.+.+-... +.. .......+.+ ++
T Consensus 138 --~~~~------~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~ 205 (302)
T 2xn4_A 138 --HVAP------MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NN 205 (302)
T ss_dssp --EECC------CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TT
T ss_pred --ecCC------CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CC
Confidence 1110 001111112222 245555555532 4589999988764432 211 1112222333 44
Q ss_pred CcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~ 669 (721)
.+++.|+.+ ..+.+||+.+.+...+..........+++. .++..++.|+.++ .+.+||....
T Consensus 206 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 206 -LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 678888765 368999999876544332222111112222 3677777777553 4788888744
No 447
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.20 E-value=1.7 Score=53.69 Aligned_cols=190 Identities=13% Similarity=0.178 Sum_probs=112.2
Q ss_pred EEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 459 FEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 459 lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
+.|......++++|+ ..|.|+++++..++.. .+......++|++++-. .+ +|++|- ..+|++|++
T Consensus 837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l 911 (1158)
T 3ei3_A 837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEW 911 (1158)
T ss_dssp ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEE
T ss_pred EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEEC
Confidence 344333357899987 3589999999755433 22222456889999854 45 454443 368999999
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~ 606 (721)
...+.. . .....+ ..|..+.....++.+++|..-..|.+ |+...++....-...+..+++++.|-.++
T Consensus 912 ~~~~~L-~-----~~~~~~---~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~- 981 (1158)
T 3ei3_A 912 TTEKEL-R-----TECNHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD- 981 (1158)
T ss_dssp CTTSCE-E-----EEEEEC---CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-
T ss_pred CCCceE-E-----EEeecc---ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-
Confidence 865421 1 011111 12333333346788888886555555 55555554444444467789999998665
Q ss_pred cEEEEEECCCcEEEEECCCC--------CceeEEEecCCCCeEEEE---EecC---------CCEEEEEeCCCcEEEE
Q 004969 607 SIFATSSFDQDVKLWDLRQK--------PIQPCYTASSSKGNVMVC---FSPD---------DHYLLGKGSGTSMFVQ 664 (721)
Q Consensus 607 ~lLaSgs~DgtIrIWDlrs~--------~~~~~~~~~~~~~~vsl~---fSpd---------g~~Lasgs~Dg~I~VW 664 (721)
.++.+..+|.+.+...... +......+..+....++. +.+. ...++-|+.+|.|.+.
T Consensus 982 -t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 982 -NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp -EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred -cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 6777899999998876542 122223333333333443 2222 2346677889988654
No 448
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=95.18 E-value=0.0056 Score=72.48 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc--cccccc--cceeeEEecccccccccccccccccccccc
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGE--FKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (721)
.+|+.++|.++.+....-..+..---.=+.|+|++|++.. ...++. +.+|++|+|+ .+.++..-...|..|++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-NNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC-SSEEEEECCGGGGGCTTCC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC-CCccccccCHHHhcCCCCC
Confidence 4677777777665422111111111134556666666542 222222 4456666666 5555544445555566666
Q ss_pred hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
.|.|.+|++...- -.++.++++|++|++..|
T Consensus 422 ~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 422 SLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EEECCSSEEESCC--CGGGGGCTTCCEEECCSS
T ss_pred EEECcCCcccCcc--cHHHhcCCCCCEEECCCC
Confidence 6666666554211 123455555555555543
No 449
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.15 E-value=0.0044 Score=65.97 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=49.3
Q ss_pred ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch-hccccccchhhhHHHHHhhcCCcchhh
Q 004969 127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC-LSMCETRVGNLWTTIAALSKLPSLAEL 203 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (721)
-+.|+|++|+|+.+. .++.+++|++|+|++|.-++.++.+.|..+|+|.. |.+..|++..+ .-.++..|++|+.|
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l--~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI--NPEAFQNLPNLQYL 109 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE--CTTSBCCCTTCCEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc--Cchhhhhccccccc
Confidence 356777777777774 35677777777777333345566777777777665 33444555543 11345667777777
Q ss_pred cccee
Q 004969 204 RFQNW 208 (721)
Q Consensus 204 ~~~~~ 208 (721)
.+..+
T Consensus 110 ~l~~n 114 (350)
T 4ay9_X 110 LISNT 114 (350)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 66554
No 450
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.12 E-value=0.0061 Score=64.27 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCc-cceEeeccccccccccc--ccccceee-EEecccccccccccc
Q 004969 90 FALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLNM--IGEFKRIH-TLNLDYSTSLTSFKE 165 (721)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~ 165 (721)
.....++..-.+|+.++|.++.. ..+.+-...|+ +=+.|+|.+| +..++- +....+|+ +|.|. + +|+.|++
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~i--~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~ 290 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTNA--TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEF 290 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBCC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECT
T ss_pred HHHHHHHHhcCCCeEEECCCCCc--ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEch
Confidence 34455666678999999998532 12222233343 5577888876 655542 34556677 88887 4 8999999
Q ss_pred cccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969 166 DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (721)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (721)
++|..+++|+.|.+.+|+|..+- -.|...+++|++|.|
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 99999999999999888887662 246778888887754
No 451
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.94 E-value=0.018 Score=55.51 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCcceeeEeecCCcc-ccchHHHHHHHHHh--cccceEeeccCCchhhHHHHHhhc---CCccceEeecccccccc----
Q 004969 70 ATEIEAVDVRSGTSC-MLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQ---RGLMCEVLNLRSSRFRK---- 139 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---- 139 (721)
...+..+|+ +.| .+..+-+..+..++ |..|+.++|.++.+|.+-.+.|++ ..-.=+.|+|++|+|..
T Consensus 35 ~~~L~~L~L---~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNL---NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEEC---TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEe---cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 355777777 456 77777766666654 788999999999998877665543 22234679999999887
Q ss_pred --cccccccceeeEEec--ccccccccccc----cccccccccchhccccccchhhhHHHHHhhcCCcc
Q 004969 140 --LNMIGEFKRIHTLNL--DYSTSLTSFKE----DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSL 200 (721)
Q Consensus 140 --~~~~~~~~~~~~l~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (721)
...+..-..|++|+| . .|.|+.-.. ..+...++|+.|.+.+|.|..-=--..+|.+=..|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~~~L~~N~~l 179 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDL 179 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHHHHHHhhHHH
Confidence 344556678999999 5 788887443 34445599999999999987441113444443333
No 452
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.88 E-value=2 Score=45.67 Aligned_cols=155 Identities=12% Similarity=0.161 Sum_probs=98.2
Q ss_pred CCeEEEEEC--CCCeEEEEeecC----CCC-CCeEEEEE--eeCCCC-EEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969 475 DGEIVVVNH--ENENIVSYIPSF----GAM-NSVLGLCW--LKKYPS-KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (721)
Q Consensus 475 DG~I~IWdl--~tg~~i~~l~~~----~H~-~~V~sl~f--sp~d~~-~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~ 544 (721)
+++|.+|++ .++. +..+... +.. ..+.+++. +|..+. ++++...+|.+..|++...... .......
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g---~~~~~lV 173 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG---YISGKKV 173 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS---CEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC---cccceEE
Confidence 579999976 4443 4444210 011 55677777 433444 6888889999999998542110 0011223
Q ss_pred eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-----CCcEEEEEcccc-CCCeEEEEEc--CCCC-cEEEEEECC
Q 004969 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-----SGRRLQVFADMH-KEHINVVKFS--NHSP-SIFATSSFD 615 (721)
Q Consensus 545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-----s~~~v~~l~~~h-~~~V~sI~fs--Pdg~-~lLaSgs~D 615 (721)
..+....++..+...+..+.++++-.+.-|..+|.+ +++.+..+..++ ...+..+++- +++. .+++++-.+
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 455556788899998889999999998778888865 345565553222 2478888884 5543 355555467
Q ss_pred CcEEEEECC-CCCceeEEE
Q 004969 616 QDVKLWDLR-QKPIQPCYT 633 (721)
Q Consensus 616 gtIrIWDlr-s~~~~~~~~ 633 (721)
.+..+||.. +.+....+.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 899999997 444444443
No 453
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.87 E-value=0.017 Score=66.18 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=30.6
Q ss_pred ceEeeccccccccccccccccee-------eEEecccccccccccccccccccccchhccccccch
Q 004969 127 CEVLNLRSSRFRKLNMIGEFKRI-------HTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVG 185 (721)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (721)
=+.|+|++|+|..+..++. +| ++|+|+ +|.|+.|++..|. ||+|+.|.|.+|.+.
T Consensus 182 L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls-~N~l~~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 182 LEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCR-ENRITHIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp CCEEECCSSCCSSCCCCC----------CCEEEECC-SSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred CCEEECcCCCCCchhhHHH--hhhcccccceEEecC-CCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence 3446666665555444322 45 666666 5566666665555 666666666666664
No 454
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.73 E-value=1 Score=49.21 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=92.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--
Q 004969 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-- 583 (721)
Q Consensus 509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-- 583 (721)
.++..++.+- ++.||.-++.... .++ ..... ....|..+..+|+|.+++..|. ..|.|-.+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~-~Yk-------~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDS-LYH-------SLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSN 99 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCS-SCE-------EEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCC-cce-------EEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCcccc
Confidence 4555555543 4688877776422 111 11222 1235788999999998888764 578888887321
Q ss_pred ----------EEEEEccc-----cCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCCCceeEEEec---------CC
Q 004969 584 ----------RLQVFADM-----HKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTAS---------SS 637 (721)
Q Consensus 584 ----------~v~~l~~~-----h~~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~~~~~~~~~~---------~~ 637 (721)
..+.+.-+ ...+|..+.|||-+. ..+++-..|++||+||+......|. .+. ..
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR 178 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence 12233311 246799999999873 3889999999999999987433333 221 11
Q ss_pred -CCeEEEEEecCCCEEEEEe--CCCcEEE
Q 004969 638 -KGNVMVCFSPDDHYLLGKG--SGTSMFV 663 (721)
Q Consensus 638 -~~~vsl~fSpdg~~Lasgs--~Dg~I~V 663 (721)
..+.+++|.++|-.|...+ .+|.|+-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 2233899999887777755 7787763
No 455
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.63 E-value=1.3 Score=45.16 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=99.1
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCCCc
Q 004969 465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPPS 534 (721)
Q Consensus 465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~~~ 534 (721)
++.+++.|+.+ ..+.+||..+++....-......... +++. .++..++.|+.+ ..+.+||..+..-.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 55777888755 67899999887654432221111122 2222 256677777765 45888888775421
Q ss_pred ccccccCcceeEeccCCC-eEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccC-CCeEEEEEcC
Q 004969 535 IRGMHYGAGTVTFDEFDQ-LTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHK-EHINVVKFSN 603 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~-V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~-~~V~sI~fsP 603 (721)
. ... ...... -..+.+ ++..++.||. -..+.+||+.+.+-...-.-... .....+.+
T Consensus 132 ~--~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 199 (306)
T 3ii7_A 132 T--KPS------MLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-- 199 (306)
T ss_dssp E--ECC------CSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred e--CCC------CcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--
Confidence 1 110 000011 122222 4555555553 34588999998754332111011 11222223
Q ss_pred CCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 604 HSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 604 dg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
++ .+++.|+.+ ..+.+||+.+.+...+..++......+++.. ++..++.|+.+ ..+.+||....
T Consensus 200 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 200 KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 44 677777654 4589999998755443322221111222222 67777778754 46788888754
No 456
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.61 E-value=0.03 Score=63.35 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=71.7
Q ss_pred cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCC-chhhHHHHHhhcCCccceEeecccccccccc------ccc
Q 004969 72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN------MIG 144 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 144 (721)
.++.+|+.. |.+.++-.-.+.+.. .+|+.++|... .++...+..+...--.=+.|+|+.|.|...+ +..
T Consensus 106 ~L~~L~L~~---~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 106 WLEEIRLKR---MVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TCCEEEEES---CBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCeEEeeC---cEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 566666643 345555444444333 47888888776 5666556666543334466788777755422 222
Q ss_pred ccceeeEEeccccccccccccccc----ccccccchhccccc-cchhhhHHHHHhhcCCcchhhccc
Q 004969 145 EFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCET-RVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
.+++|++|+|.++. +.+....+ ..+|+|+.|.+.++ .+.. -...+.++++|++|.+.
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccc
Confidence 55678888887554 22332222 33588888888776 3333 22345566777777543
No 457
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.39 E-value=2.5 Score=46.14 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc--c
Q 004969 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH--Y 540 (721)
Q Consensus 465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~--~ 540 (721)
++..++.+- ++.||.-++..+...+.+.... .-..|..+..+ ++|++|+..+. ..|.|-.+..+........ .
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-psG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-TSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-TTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEEC-CCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 667777665 5788888887555555555432 12357778887 78888888765 4899999884332111000 1
Q ss_pred CcceeEec-------cCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC--cEEEEEcc--------ccCCCeEEEE
Q 004969 541 GAGTVTFD-------EFDQLTSVHVNSM---DELFLASGYSKNIALYDINSG--RRLQVFAD--------MHKEHINVVK 600 (721)
Q Consensus 541 ~~~~~~~~-------~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~--------~h~~~V~sI~ 600 (721)
......+. ...+|..+.|||- +..+++-..|+.||+||+... ++. .+.. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 11111111 2467999999996 468999999999999999852 233 3331 1226788999
Q ss_pred EcCCCCcEEEEEE--CCCcEEE
Q 004969 601 FSNHSPSIFATSS--FDQDVKL 620 (721)
Q Consensus 601 fsPdg~~lLaSgs--~DgtIrI 620 (721)
|.+++ -.+...+ ..|.|+-
T Consensus 187 Fg~~~-lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 187 FSKDG-LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ECTTS-SCEEEEECTTSCEEEE
T ss_pred EcCCC-cEEEEEecCCCCCEEE
Confidence 99976 5555544 6777754
No 458
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.15 E-value=1.8 Score=43.95 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=97.6
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCC
Q 004969 465 ISCLMVFGT-LD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP 533 (721)
Q Consensus 465 dg~~LasGs-~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~ 533 (721)
++.+++.|+ .+ ..+.+||..+++....-......... +++. .++..++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445666666 32 47889999877654322111111112 2222 256677777755 4688899887651
Q ss_pred -cccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCC
Q 004969 534 -SIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSNH 604 (721)
Q Consensus 534 -~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPd 604 (721)
....+.. ..... ....+.+ ++..++.||.+ ..+.+||+.+.+-... +.. .......+.+ +
T Consensus 91 ~~W~~~~~------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~ 159 (301)
T 2vpj_A 91 GVWYSVAP------MNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--S 159 (301)
T ss_dssp CCCEEECC------CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--T
T ss_pred CeeEECCC------CCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--C
Confidence 0111110 00011 1122222 45556666543 4689999987764332 221 1111222223 4
Q ss_pred CCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 605 SPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 605 g~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
+ .+++.|+.+ ..+.+||+.+.+...+...+......+++. -++..++.|+.+ ..+.+||+...
T Consensus 160 ~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 160 G-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp T-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred C-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 5 677777765 458999998876544422222111112222 256777777654 46888998744
No 459
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.75 E-value=8.1 Score=40.82 Aligned_cols=196 Identities=10% Similarity=0.126 Sum_probs=124.2
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~ 538 (721)
.--+| ..+.+|.-. ..++.|+|+++...++.... ...|.--.|- +.+.|+-.+. ..|.-|++.......+..
T Consensus 72 AIMnP-~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 72 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEEC--SSSEEEEEES-SEEEEEESSTTCCCEEEE
T ss_pred eeeCC-CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEec--CCCeEEEEcC-CcEEEEcccCCCCCceee
Confidence 44588 667777765 78999999999988888764 3578888885 5566666554 489999998744332222
Q ss_pred ccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcC--CCCcEE
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIF 609 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP--dg~~lL 609 (721)
..+... ...+|..-..+++..+++..|- .|.+.+|..+.+ ..+.+.+ |......+.... ....++
T Consensus 144 dR~~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG-haa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 144 DRHSSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG-HAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp ECCGGG----TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC-SEEEEEEECCTTCSSCEEEE
T ss_pred ecchhc----ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeee-eeeeeEEEecCCCCCCceEE
Confidence 222111 1245677777788888776652 377889998744 4455665 665544333321 111244
Q ss_pred EEEEC---CCcEEEEECCCCC-cee-----EE--EecC---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 610 ATSSF---DQDVKLWDLRQKP-IQP-----CY--TASS---SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 610 aSgs~---DgtIrIWDlrs~~-~~~-----~~--~~~~---~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+-+.. .+.++|-++.... ..+ .. .++. ..-++++..|+.-..++.-+.-|.+++||+..
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 43333 2589999984430 011 11 1121 23356888999888899999999999999983
No 460
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.52 E-value=3.6 Score=45.25 Aligned_cols=112 Identities=15% Similarity=0.305 Sum_probs=62.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE--EeecC----CCCCCeEEEEEeeC---CCCEEEEEeC------
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS--YIPSF----GAMNSVLGLCWLKK---YPSKLIAGSD------ 519 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~--~l~~~----~H~~~V~sl~fsp~---d~~~LaSgs~------ 519 (721)
.++.++|.| ++.++++-...+.|++++..++.... .+... .......+|+|+|. ++.+.++-+.
T Consensus 28 ~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 488999999 88877765444579988876565432 22210 12467889999843 4444444332
Q ss_pred ------CCeEEEEEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeC
Q 004969 520 ------NGSLKLYDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGY 570 (721)
Q Consensus 520 ------DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~ 570 (721)
...|.-|+.......+.. ...... +. .......++|.|++..+++.|.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~---~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEK---PVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEE---EEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCC---cEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555432211100 000110 11 1123688999999988887664
No 461
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.36 E-value=2.6 Score=42.81 Aligned_cols=187 Identities=9% Similarity=0.031 Sum_probs=96.7
Q ss_pred CCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCCCCCcccccc
Q 004969 466 SCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 466 g~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~~~~~~~~~~ 539 (721)
+.+++.|+. ...+.+||..+++....-...........+. .++..++.|+.+ ..+.+||..+..-. .+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--~~~ 86 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDSWY--SKL 86 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTEEE--EEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCeEE--ECC
Confidence 456667765 3578999998876543221111111222222 255667777754 57888888775421 111
Q ss_pred cCcceeEeccCC-CeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEEEE
Q 004969 540 YGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFAT 611 (721)
Q Consensus 540 ~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lLaS 611 (721)
. ..... ....+.+ ++..++.||.+ ..+.+||..+.+-...-.-.. ......+.+ ++ .+++.
T Consensus 87 ~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~ 155 (306)
T 3ii7_A 87 G------PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVC 155 (306)
T ss_dssp C------CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred C------CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEE
Confidence 0 00111 1122222 55566666654 468999999876433211101 111222222 44 67777
Q ss_pred EEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 612 SSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 612 gs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
|+. -..+.+||+.+.....+..+.......+++.. +++.++.|+.+ ..+.+||+...
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 654 34588999998765444322221111123332 66677776643 35788888744
No 462
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.28 E-value=1.9 Score=45.71 Aligned_cols=147 Identities=8% Similarity=0.066 Sum_probs=82.0
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC----C
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY----S 571 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~----D 571 (721)
....+|+|. ++++ |+.+..+|.|+++|... ...+..+. +..........++++|+ ++.++++.. +
T Consensus 29 ~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 29 EVPWSIAPL-GGGR-YLVTERPGRLVLISPSG-KKLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp SCEEEEEEE-ETTE-EEEEETTTEEEEECSSC-EEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCeEEEEc-CCCe-EEEEeCCCEEEEEeCCC-ceEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 457889998 4666 55556679999987432 21111100 11112345789999997 566665543 3
Q ss_pred ----CcEEEEECCCC--c-----EE-EEEccccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCC
Q 004969 572 ----KNIALYDINSG--R-----RL-QVFADMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK 626 (721)
Q Consensus 572 ----g~IrlWDl~s~--~-----~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~ 626 (721)
..|..|+...+ . .+ ..+..........++|.|+| .++++-+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 56778887644 1 11 11221112234679999999 66666432 245555555432
Q ss_pred C-------ceeEEEecCCCCeEEEEEec-CCCEEEEE
Q 004969 627 P-------IQPCYTASSSKGNVMVCFSP-DDHYLLGK 655 (721)
Q Consensus 627 ~-------~~~~~~~~~~~~~vsl~fSp-dg~~Lasg 655 (721)
. ...++ ..++..+..++|+| +|+.+++-
T Consensus 180 ~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 180 PPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEE
T ss_pred CCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEe
Confidence 0 01122 23555666899999 67666553
No 463
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.24 E-value=0.075 Score=57.12 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=31.0
Q ss_pred ccceeeEEecccccc-------ccccccccc-ccccccchhccccccchhhhHHHHHhh---cCCcchhhcc
Q 004969 145 EFKRIHTLNLDYSTS-------LTSFKEDCF-SCMPNLICLSMCETRVGNLWTTIAALS---KLPSLAELRF 205 (721)
Q Consensus 145 ~~~~~~~l~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 205 (721)
.++.|++|+|.++.. +..+..-.- ..+|+|+.|.+++|.|.+.. ..++. -+|.|++|.+
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDI 286 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEEC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEEC
Confidence 566777777654211 222222111 24677777777777776532 23333 3556666654
No 464
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.15 E-value=10 Score=40.24 Aligned_cols=168 Identities=13% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEec--CCC-EEEEEe-C--CCcEEEEECCCCc----EEEE
Q 004969 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNS--MDE-LFLASG-Y--SKNIALYDINSGR----RLQV 587 (721)
Q Consensus 519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp--~~~-~lls~g-~--Dg~IrlWDl~s~~----~v~~ 587 (721)
.+|.|.++|..+.......+..... .+. ..-....+.+.+ ++. +++++. . +.+|.+|++..+. .+..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~--~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGN--TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECS--SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCC--CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence 6889999998753221111110000 000 112346666655 333 455553 2 4678888776432 2334
Q ss_pred EccccCCCeEEEEEcCCCCcEEEEEEC-----------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC
Q 004969 588 FADMHKEHINVVKFSNHSPSIFATSSF-----------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (721)
Q Consensus 588 l~~~h~~~V~sI~fsPdg~~lLaSgs~-----------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~ 650 (721)
+.+..-...+.+.+.++| .+.++... .|.|.-+|. ++... ...+-..+..++||||++
T Consensus 159 ~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~--~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV--VAEGFDFANGINISPDGK 233 (355)
T ss_dssp ECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE--EEEEESSEEEEEECTTSS
T ss_pred cccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE--eecCCcccCcceECCCCC
Confidence 443234568899999998 66666531 234444554 33222 223334455799999999
Q ss_pred EEEEEe-CCCcEEEEEcCCC-ccc-----ccccCeEEEEECC-CCCcccccccEEEEe
Q 004969 651 YLLGKG-SGTSMFVQSLRGD-PFR-----DFNMSILAAYTRP-SSKSEIVKVNLLAST 700 (721)
Q Consensus 651 ~Lasgs-~Dg~I~VWDl~g~-~l~-----~~~~~V~~v~fsP-~~~~~~v~v~lLASg 700 (721)
+++.+. ..+.|+.|++... .+. ......-.++..+ ++ ++.+++
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G-------~lwva~ 284 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG-------DLWVGC 284 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC-------CEEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC-------cEEEEe
Confidence 887765 5678999998632 111 1233455567777 47 666644
No 465
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.53 Score=50.04 Aligned_cols=154 Identities=10% Similarity=0.089 Sum_probs=86.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEEE-eCCCeEEEEEcCCCCCcccccccCc
Q 004969 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGA 542 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~ 542 (721)
+.+++.++.||.|.-+|.++|+....++.. ...++....-. +.++..++.. +.||.|..++..++...... . .
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~-~--~ 85 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL-S--I 85 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE-E--H
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee-c--c
Confidence 357899999999999999999999988753 21233322110 0122333333 58999999998775331100 0 0
Q ss_pred ceeEeccCCCeEE--------EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC------eEEEEEc---C-C
Q 004969 543 GTVTFDEFDQLTS--------VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH------INVVKFS---N-H 604 (721)
Q Consensus 543 ~~~~~~~~~~V~s--------v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~------V~sI~fs---P-d 604 (721)
.......++.. .--...++.+++++.+|.+...|+++|+.++++..+.... ..|.... . .
T Consensus 86 --~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 86 --RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp --HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred --ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 00001111111 0000156788999999999999999999999997422111 1111111 0 1
Q ss_pred CCcEEEEEECCCcEEEEECCCC
Q 004969 605 SPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~ 626 (721)
....++.|..+..+.+.+ +++
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTS
T ss_pred CCCeEEEecceEEEEEEC-CCC
Confidence 114677777777777766 444
No 466
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.02 E-value=11 Score=40.02 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=127.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE--Eeec--CCCCCCeEEEEEeeC--CCCEEEEE-e--CCCeEEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS--YIPS--FGAMNSVLGLCWLKK--YPSKLIAG-S--DNGSLKL 525 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~--~l~~--~~H~~~V~sl~fsp~--d~~~LaSg-s--~DGtVrI 525 (721)
.++.|+|.| ++.++++-...|.|++++..++.... .+.. .........|+++|. .+..|+.. + .++.|.-
T Consensus 33 ~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 33 SPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 489999999 88877776558999999876665422 2210 123467899999852 13344332 2 4455666
Q ss_pred EEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeC-------------CCcEEEEECCCCc------
Q 004969 526 YDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGY-------------SKNIALYDINSGR------ 583 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~-------------Dg~IrlWDl~s~~------ 583 (721)
|...........+........ +. ....-..+.|.|++..+++.|. .|.|.-.+....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 666542210000000011110 11 1112467899999887777653 2445545544210
Q ss_pred -EEEEEccccCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECCCCC----------------ceeEEEecCC-CCeEEEE
Q 004969 584 -RLQVFADMHKEHINVVKFSNHSPSIFATS-SFDQDVKLWDLRQKP----------------IQPCYTASSS-KGNVMVC 644 (721)
Q Consensus 584 -~v~~l~~~h~~~V~sI~fsPdg~~lLaSg-s~DgtIrIWDlrs~~----------------~~~~~~~~~~-~~~vsl~ 644 (721)
....+..+|.. ...++|+|+| .++++- +.|+.=.|--+..+. ..++..+..+ ..+..++
T Consensus 192 ~~~~i~a~G~RN-p~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~ 269 (347)
T 3das_A 192 PGSPVYSYGHRN-VQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA 269 (347)
T ss_dssp TTCCEEEBCCSB-CCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred CCCeEEeeCCCC-cceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence 01122222443 4679999987 555543 334333333333221 1233444333 3555677
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCc--------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969 645 FSPDDHYLLGKGSGTSMFVQSLRGDP--------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 703 (721)
Q Consensus 645 fSpdg~~Lasgs~Dg~I~VWDl~g~~--------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~ 703 (721)
|. +|..++..-..+.|....+.+.. +......+..+...|++ .++++.+..
T Consensus 270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-------~lyv~td~~ 328 (347)
T 3das_A 270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-------KLWLVTSNT 328 (347)
T ss_dssp EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-------EEEEEECTT
T ss_pred EE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-------cEEEEEcCC
Confidence 76 46666655555666666665321 11123578899999999 887776655
No 467
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.01 E-value=0.06 Score=60.88 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=49.1
Q ss_pred ccceEeeccCCchhhHHHHHhhcCCccceEeecc----ccccccc-------ccccccceeeEEecccccc-cccccc-c
Q 004969 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLR----SSRFRKL-------NMIGEFKRIHTLNLDYSTS-LTSFKE-D 166 (721)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~~-~ 166 (721)
.+|+.++|..+.+....+..+.+.--+=+.|+|+ +|++..+ .++..+++|++|+|.+|.. ++.-.- .
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 5666666655556666666555432233456663 4444432 1123355555555544332 221111 1
Q ss_pred ccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969 167 CFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (721)
-...+|+|+.|.+..|++.+. .-.+.+..+++|++|.+..|
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESC
T ss_pred HHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCC
Confidence 112345555555555555431 11122344555555555444
No 468
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.98 E-value=1.8 Score=44.25 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=95.8
Q ss_pred CCCEEEEEEC----C-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCC
Q 004969 465 ISCLMVFGTL----D-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRH 530 (721)
Q Consensus 465 dg~~LasGs~----D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~ 530 (721)
++.+++.|+. + ..+.+||..+.+....-.......... ++. .++..++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG-VGV--IDGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE-EEE--ETTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE-EEE--ECCEEEEEcCCCCCcccccEEEECCCC
Confidence 4567777765 2 468899998776543222111111222 222 245666666643 3577888876
Q ss_pred CCCcccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEc
Q 004969 531 MPPSIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFS 602 (721)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fs 602 (721)
..-. .... ..... .-..+.+ ++..++.||.+ ..+.+||+.+.+-... +.. .......+.+
T Consensus 147 ~~W~--~~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~- 214 (308)
T 1zgk_A 147 DEWH--LVAP------MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL- 214 (308)
T ss_dssp TEEE--ECCC------CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE-
T ss_pred CeEe--ECCC------CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE-
Confidence 4321 1110 00001 1122222 55566666643 4689999987754322 111 1112223333
Q ss_pred CCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 603 NHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 603 Pdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
++ .+++.|+.+ ..+.+||+.+.+...+..++......+++. -+++.++.|+.+ ..+.+||+...
T Consensus 215 -~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 215 -HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp -TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred -CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 44 678888765 569999999875543332222111112232 266777777654 35677777643
No 469
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.88 E-value=2.7 Score=42.59 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCCccc
Q 004969 466 SCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPPSIR 536 (721)
Q Consensus 466 g~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~~~~ 536 (721)
+.+++.|+.+ ..+..||..+++....-........ .+++. .++..++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-- 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT-- 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE--ECCEEEEEeCcCCCccccceEEECCCCCcee--
Confidence 3556666643 4688899887764433111111111 12222 256667777754 35778888764321
Q ss_pred ccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEE
Q 004969 537 GMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIF 609 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lL 609 (721)
.+.. ..... ....+.+ ++..++.||.+ ..+.+||+.+.+-...-.-.. ......+.+ ++ .++
T Consensus 91 ~~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iy 159 (302)
T 2xn4_A 91 SVAN------MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLY 159 (302)
T ss_dssp EECC------CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred eCCC------CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEE
Confidence 1110 00011 1122222 56666777754 358899998776443211101 111222222 44 677
Q ss_pred EEEECC-------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 610 ATSSFD-------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 610 aSgs~D-------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
+.|+.+ ..+.+||+.+.....+...+......+++. -++..++.|+.+ +.+.+||....
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 777643 358899998876544332222211112222 267777777654 36888888744
No 470
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.70 E-value=2.1 Score=43.96 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=95.0
Q ss_pred CCCEEEEEEC-----C------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--------CeEEE
Q 004969 465 ISCLMVFGTL-----D------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------GSLKL 525 (721)
Q Consensus 465 dg~~LasGs~-----D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------GtVrI 525 (721)
++.+++.|+. . ..+.+||..+++....-........ .+++. .++..++.|+.+ ..+.+
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE--ALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE--ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE--ECCEEEEEeCCcCCCCCcccceEEE
Confidence 6678888873 1 2377889888765332111111111 12222 245666666632 45888
Q ss_pred EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-----CcEEEEECCCCcEEEEEcccc-CCCeEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-----KNIALYDINSGRRLQVFADMH-KEHINV 598 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~s 598 (721)
||..+.+-. .... ......-.+++. .++..++.||. + ..+.+||+.+.+-...-.-.. .....+
T Consensus 122 ~d~~~~~W~--~~~~------~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 122 YDRLSFKWG--ESDP------LPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp EETTTTEEE--ECCC------CSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ECCCCCcEe--ECCC------CCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 888774321 1110 000011111222 25556666665 2 468999998775433211001 111222
Q ss_pred EEEcCCCCcEEEEEECCC-----cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC--------------
Q 004969 599 VKFSNHSPSIFATSSFDQ-----DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-------------- 659 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~Dg-----tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-------------- 659 (721)
+.+ ++ .+++.|+.++ .+.+||+.+.+...+...+......+++. -+++.++.|+.++
T Consensus 193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~ 268 (315)
T 4asc_A 193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELN 268 (315)
T ss_dssp EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccC
Confidence 333 44 6888887654 58899999876544433222211112222 2567777776532
Q ss_pred cEEEEEcCCC
Q 004969 660 SMFVQSLRGD 669 (721)
Q Consensus 660 ~I~VWDl~g~ 669 (721)
.+.+||+...
T Consensus 269 ~v~~yd~~~~ 278 (315)
T 4asc_A 269 DIWRYNEEEK 278 (315)
T ss_dssp EEEEEETTTT
T ss_pred cEEEecCCCC
Confidence 3567777643
No 471
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.63 E-value=0.054 Score=58.29 Aligned_cols=109 Identities=10% Similarity=0.149 Sum_probs=72.8
Q ss_pred cccceEeeccCCchhhHHHHHhhcCC-ccceEeeccc--cc------ccccc---cccccceeeEEecccccccccc-cc
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRS--SR------FRKLN---MIGEFKRIHTLNLDYSTSLTSF-KE 165 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~-~~ 165 (721)
..+|+.++|....++.+.++.|.... .+=+.|+|+. +. ++.|. ..+.|++|.+|+|. ++.|+.- ..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCTTHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCCCchHHHH
Confidence 46788888888888889999998643 3456688752 22 21111 12469999999998 5666531 11
Q ss_pred ccc--ccccccchhccccccchhh--hHHHHHhhcCCcchhhcccee
Q 004969 166 DCF--SCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQNW 208 (721)
Q Consensus 166 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (721)
--| ..||+|+.|.+..|.+.+. -.-..+|.+|++|++|.+..|
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 222 4799999999999988763 011224567899999987644
No 472
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.17 E-value=16 Score=40.06 Aligned_cols=197 Identities=10% Similarity=0.131 Sum_probs=125.2
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537 (721)
Q Consensus 458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~ 537 (721)
+.-.|| ..+.+|.-. ..++.|+|+++...++.... ...|.--.|- +.+.|+-.+. ..|.-|++.......+.
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWi--s~~~l~lVT~-taVyHWsi~~~s~P~kv 141 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKM 141 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEE--ETTEEEEECS-SEEEEEESSSSCCCEEE
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEec--CCCeEEEEcC-CeeEEecccCCCCchhh
Confidence 345677 667676665 78999999999988887764 2467777886 4556655554 48999999864433222
Q ss_pred cccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC--CCcE
Q 004969 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH--SPSI 608 (721)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd--g~~l 608 (721)
...+... ...+|..-..+++..+++..|- .|.+.+|..+.+. .+.+.| |......+....+ ...+
T Consensus 142 FdR~~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG-haa~F~~~~~~g~~~~~~l 215 (494)
T 1bpo_A 142 FDRHSSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAASFAQFKMEGNAEESTL 215 (494)
T ss_dssp EECCGGG----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC-SEEEEEEEECTTCSSEEEE
T ss_pred eecchhc----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee-eeeeeEEEecCCCCCCceE
Confidence 2222111 1245677777788888776652 4778899987443 455565 7665544444321 1134
Q ss_pred EEEEECC---CcEEEEECCCCC-cee-----EEE--ecC---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 609 FATSSFD---QDVKLWDLRQKP-IQP-----CYT--ASS---SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 609 LaSgs~D---gtIrIWDlrs~~-~~~-----~~~--~~~---~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
++-+... +.++|-++.... ..+ ... ++. ..-++++..|+.-..++.-+.-|.+++||+..
T Consensus 216 f~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp EEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 4444443 789999985430 001 111 111 23356899999888999999999999999983
No 473
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.04 E-value=1.2 Score=47.04 Aligned_cols=148 Identities=9% Similarity=0.076 Sum_probs=82.2
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC-C---
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY-S--- 571 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~-D--- 571 (721)
....+++|. +++.++ .+..+|.|.+++ .+.. ..+.... +..........++++|+ ++.++++.. .
T Consensus 31 ~~P~~ia~~-pdG~l~-V~e~~g~I~~i~--~g~~--~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 31 EVPWALAFL-PDGGML-IAERPGRIRLFR--EGRL--STYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp SCEEEEEEC-TTSCEE-EEETTTEEEEEE--TTEE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCceEEEEc-CCCeEE-EEeCCCeEEEEE--CCCc--cEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 456789998 677754 456679999998 3221 1110000 11122345789999998 566666543 2
Q ss_pred --CcEEEEECCCCc-----EE-EEEc--cccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCC--
Q 004969 572 --KNIALYDINSGR-----RL-QVFA--DMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK-- 626 (721)
Q Consensus 572 --g~IrlWDl~s~~-----~v-~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~-- 626 (721)
+.|..|+...++ .+ ..+. .........++|.|+| .+.++.+. .|.|.-+|....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 578888877442 11 1232 1111234689999999 66666432 145655665431
Q ss_pred ----------CceeEEEecCCCCeEEEEEec-CCCEEEEEe
Q 004969 627 ----------PIQPCYTASSSKGNVMVCFSP-DDHYLLGKG 656 (721)
Q Consensus 627 ----------~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs 656 (721)
....++. .++..+..++|+| +|..+++-.
T Consensus 182 ~~npf~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTCTTTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEE
T ss_pred CCCcccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEc
Confidence 0111222 2444555789999 677666544
No 474
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.01 E-value=6.1 Score=40.32 Aligned_cols=183 Identities=10% Similarity=0.086 Sum_probs=92.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeC----C-------CeEEEEEcCCCCCcc
Q 004969 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSD----N-------GSLKLYDIRHMPPSI 535 (721)
Q Consensus 468 ~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~----D-------GtVrIWDi~~~~~~~ 535 (721)
+++.|+ ..+.+||..+++-.. ...... ...-.+++. .++..++.|+. + ..+.+||..+.+-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-- 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-- 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--
Confidence 455565 579999999887543 221111 122223332 46777777773 1 1267778776432
Q ss_pred cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS 605 (721)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg 605 (721)
..+.... ..+.. ...+.+ ++..++.||.+ ..+.+||..+++-... +.. .......+. -++
T Consensus 80 ~~~~~~p-~~r~~----~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~ 149 (315)
T 4asc_A 80 LGMPPLP-SPRCL----FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-VVYGHTVLS--HMD 149 (315)
T ss_dssp EECCCBS-SCEES----CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETT
T ss_pred EECCCCC-cchhc----eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-cccceeEEE--ECC
Confidence 1111100 00111 112222 45555666622 4689999988754322 111 111122222 244
Q ss_pred CcEEEEEEC-C-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969 606 PSIFATSSF-D-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD 669 (721)
Q Consensus 606 ~~lLaSgs~-D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~ 669 (721)
.+++.|+. + ..+.+||+.+.+...+...+......+++. -+++.++.|+.++ .+.+||+...
T Consensus 150 -~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 150 -LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp -EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred -EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 67777776 2 468999998875543332222111112222 2667777777654 4778887643
No 475
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.00 E-value=5.1 Score=46.51 Aligned_cols=197 Identities=10% Similarity=0.060 Sum_probs=103.7
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEe-e-----cCCCCCCeEEEEEeeCCCCEEEEEeCCC------eEEEEEc
Q 004969 465 ISCLMVFGTLD----GEIVVVNHENENIVSYI-P-----SFGAMNSVLGLCWLKKYPSKLIAGSDNG------SLKLYDI 528 (721)
Q Consensus 465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l-~-----~~~H~~~V~sl~fsp~d~~~LaSgs~DG------tVrIWDi 528 (721)
++.+++.|+.+ ..+.+||..+++....- . .......- +++..+.++..++.||.++ .+.+||.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 66788888754 46889998887654433 1 11111112 2222211566777777543 4777888
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEc----cccCCCeEEEEEc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIALYDINSGRRLQVFA----DMHKEHINVVKFS 602 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg--~IrlWDl~s~~~v~~l~----~~h~~~V~sI~fs 602 (721)
.+..-. .... ......-.+++.-.++..++.||.++ .+.+||..+.+-...-. ........++.+.
T Consensus 476 ~t~~W~--~~~~------~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREWS--MIKS------LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEEE--ECCC------CSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcEE--ECCC------CCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 764321 1110 00011112222223667777777543 79999999876443221 0011222335556
Q ss_pred CCCCcEEEEEEC--C-----CcEEEEECCCCC------ceeEEEec-CCCCeEEEEEecCCCEEEEEeC--------CCc
Q 004969 603 NHSPSIFATSSF--D-----QDVKLWDLRQKP------IQPCYTAS-SSKGNVMVCFSPDDHYLLGKGS--------GTS 660 (721)
Q Consensus 603 Pdg~~lLaSgs~--D-----gtIrIWDlrs~~------~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~--------Dg~ 660 (721)
...+.+++.|+. + ..+.+||+.+.. ...+.... ......+++...++..++.||. ...
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 552367888876 2 458899998876 33333311 1111113344444777777774 345
Q ss_pred EEEEEcCCCc
Q 004969 661 MFVQSLRGDP 670 (721)
Q Consensus 661 I~VWDl~g~~ 670 (721)
+.+||+....
T Consensus 628 v~~yd~~t~~ 637 (695)
T 2zwa_A 628 IISLDPLSET 637 (695)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCe
Confidence 8889987543
No 476
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.75 E-value=7.3 Score=42.76 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecC---CCEEEEEeC----
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSM---DELFLASGY---- 570 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~---~~~lls~g~---- 570 (721)
...++|+|. ++++++++-...+.|++++..++.... +....... .......+..++++|+ ++.++++..
T Consensus 27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 456799998 677766664444578888765433210 00000000 0012345789999996 666665542
Q ss_pred ---------CCcEEEEECCCC-------cEEE-EEccccCCCeEEEEEcCCCCcEEEEEECC------------------
Q 004969 571 ---------SKNIALYDINSG-------RRLQ-VFADMHKEHINVVKFSNHSPSIFATSSFD------------------ 615 (721)
Q Consensus 571 ---------Dg~IrlWDl~s~-------~~v~-~l~~~h~~~V~sI~fsPdg~~lLaSgs~D------------------ 615 (721)
...|.-|+...+ +.+. .+..........++|.|+| .+.++.+..
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECCCCCCCcccccccccccccc
Confidence 134655655322 1111 1222122357899999999 666654431
Q ss_pred --------------CcEEEEECCCCCc---------eeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969 616 --------------QDVKLWDLRQKPI---------QPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR 667 (721)
Q Consensus 616 --------------gtIrIWDlrs~~~---------~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~ 667 (721)
|.|.-++....-. ....-..++..+..++|+|+|+..++- +.++.-.|.-+.
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 2333333332100 112223466677789999988866654 334444444443
No 477
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.42 E-value=2.9 Score=42.65 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=96.5
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC----C-----CeEEEEEcCCC
Q 004969 465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----N-----GSLKLYDIRHM 531 (721)
Q Consensus 465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~----D-----GtVrIWDi~~~ 531 (721)
++.+++.|+.+ ..+.+||..+++....-........ .+++. .++..++.|+. + ..+.+||..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 55777777742 4688999987765432111111111 12222 25566666665 2 35778888764
Q ss_pred CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCC
Q 004969 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSNH 604 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPd 604 (721)
.-. .+..... .. .....+.+ ++..++.||.+ ..+.+||..+.+-... +.. .......+.+ +
T Consensus 101 ~W~--~~~~~p~-~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~ 168 (308)
T 1zgk_A 101 QWS--PCAPMSV-PR----NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVL--N 168 (308)
T ss_dssp EEE--ECCCCSS-CC----BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--T
T ss_pred eEe--ECCCCCc-Cc----cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEE--C
Confidence 321 1110000 00 01122222 55556666532 4688999987754332 111 1112222333 4
Q ss_pred CCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969 605 SPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD 669 (721)
Q Consensus 605 g~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~ 669 (721)
+ .+++.|+.+ ..+.+||+.+.....+...+......+++.. ++..++.|+.+ ..+.+||+...
T Consensus 169 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 169 R-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp T-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred C-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 4 677777765 4589999988755433222221111122222 66777777654 46888998744
No 478
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.99 E-value=4.6 Score=40.23 Aligned_cols=182 Identities=8% Similarity=-0.064 Sum_probs=93.2
Q ss_pred CCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969 466 SCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (721)
Q Consensus 466 g~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~ 539 (721)
..+|.+...| +|+.=....+. ....+- .+--..+..++|+| ++.+.+. .+|.+.-.+..+... ....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG-~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~--~~W~ 76 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG-KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN--DNWM 76 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE-SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT--CCHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccC-ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCc--cccc
Confidence 3456666666 66665554443 112221 11124678999995 7775554 677765555433221 1111
Q ss_pred cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE------EEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL------QVFADMHKEHINVVKFSNHSPSIFATSS 613 (721)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v------~~l~~~h~~~V~sI~fsPdg~~lLaSgs 613 (721)
+....+--.......++.|.+++...++ .||.|.-++..+.... ..+-..-=..+..|.|.|+| .+.+..
T Consensus 77 ~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~- 152 (236)
T 1tl2_A 77 GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH- 152 (236)
T ss_dssp HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE-
T ss_pred ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe-
Confidence 1111110001112467888888777776 5699988886432110 11110012467999999999 566655
Q ss_pred CCCcEEEEECCCCCce-----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE
Q 004969 614 FDQDVKLWDLRQKPIQ-----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM 661 (721)
Q Consensus 614 ~DgtIrIWDlrs~~~~-----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I 661 (721)
|+.++-+...+.... ............ -+.|.++|...++. ++.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 777544333322110 011111111222 46689998888766 6644
No 479
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.83 E-value=6.7 Score=41.57 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEE-e--CC
Q 004969 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLAS-G--YS 571 (721)
Q Consensus 498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~-g--~D 571 (721)
-...++|+|. +++.++++--..|.|++++..++... .+... ..+..........++++|+ ++.+++. + .+
T Consensus 31 L~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~--~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKT--ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE--EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEe--eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3567899998 67777766555899999986554321 00000 0011223345789999985 4555543 2 34
Q ss_pred CcEEEEECCCC----------cEE-EEEccccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCCC
Q 004969 572 KNIALYDINSG----------RRL-QVFADMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQKP 627 (721)
Q Consensus 572 g~IrlWDl~s~----------~~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~~ 627 (721)
+.|.-|....+ +.+ ..+..........|.|.|+| .+.++.+. -|.|.-.+.....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 55666665541 112 12321122234579999999 66666442 2444444544220
Q ss_pred -------ceeEEEecCCCCeEEEEEecCCCEEEEE
Q 004969 628 -------IQPCYTASSSKGNVMVCFSPDDHYLLGK 655 (721)
Q Consensus 628 -------~~~~~~~~~~~~~vsl~fSpdg~~Lasg 655 (721)
...++ ..++..+..++|+|+|...++-
T Consensus 186 p~~nPf~~~~i~-a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEE-EBCCSBCCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEE-eeCCCCcceEEECCCCCEEEEe
Confidence 01133 2466677789999998876654
No 480
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.73 E-value=32 Score=42.36 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=104.7
Q ss_pred CeEEEEEeCCC-----CCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEE
Q 004969 455 RPRQFEYHPSI-----SCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYD 527 (721)
Q Consensus 455 ~V~~lafsP~d-----g~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWD 527 (721)
.|.|+++.|.. ..++++|.. |++|+|+++.+.+.+......+ .....++..... ...+|..|-.||.+.-+.
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence 48999998732 479999997 9999999999877665544322 234445544322 345788899999987766
Q ss_pred cCC--CCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-EEEEEcC
Q 004969 528 IRH--MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHI-NVVKFSN 603 (721)
Q Consensus 528 i~~--~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V-~sI~fsP 603 (721)
+.. +...- ....+-+..++.=..+...+. .++++| +....+|--+ ++....-. ....+ ....|+.
T Consensus 634 ~d~~tg~l~d-------~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l--~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 634 LNIETGLLSD-------RKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNV--NLKEVNYMCPLNS 702 (1158)
T ss_dssp ECTTTCCEEE-------EEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEB--SSSCCCEEEEECC
T ss_pred EcCCCCcccc-------ceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEecc--ChHHhceEeccCc
Confidence 543 22210 011222333444334433343 344444 4444445433 33322211 12223 3344543
Q ss_pred CC-CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969 604 HS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG 656 (721)
Q Consensus 604 dg-~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs 656 (721)
.. +.-++.. .++.++|..+..-...++.+++-...+-.++++|+.+.++.+.
T Consensus 703 e~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 703 DGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp SSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 22 2334433 3556999888654444555555555555899999888766554
No 481
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=90.67 E-value=0.068 Score=56.08 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=49.9
Q ss_pred cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccc-hhccccccchhhhHHHHHhhcCCcchh
Q 004969 126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI-CLSMCETRVGNLWTTIAALSKLPSLAE 202 (721)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (721)
+=+.|+|++|++..+.- +....+|++|.|. .+ |+.|++++|..+++|+ .|.+-+ +|..+ .-.|...|++|++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I--~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI--EFGAFMGCDNLRY 301 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE--CTTTTTTCTTEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEE--chhhhhCCccCCE
Confidence 34567777777776653 4456677777776 33 8888888888888887 777776 44333 1246677777777
Q ss_pred hcc
Q 004969 203 LRF 205 (721)
Q Consensus 203 ~~~ 205 (721)
|.+
T Consensus 302 l~l 304 (329)
T 3sb4_A 302 VLA 304 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 482
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.59 E-value=6.4 Score=40.22 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=94.4
Q ss_pred CCCEEEEEEC----CC-------eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-------CeEEEE
Q 004969 465 ISCLMVFGTL----DG-------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-------GSLKLY 526 (721)
Q Consensus 465 dg~~LasGs~----DG-------~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-------GtVrIW 526 (721)
++.+++.|+. ++ .+.+||..+++....-........ .+++. .++..++.|+.+ ..+.+|
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE--VDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE--ETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE--ECCEEEEEcCccCCCCcccceEEEE
Confidence 6788888873 12 277889887765432111111111 22232 255667777754 357778
Q ss_pred EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccC-CCeEEE
Q 004969 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHK-EHINVV 599 (721)
Q Consensus 527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~-~~V~sI 599 (721)
|..+.+-. ...... ..... .+++. .++..++.||. -..+.+||+.+.+-...-..... .....+
T Consensus 133 d~~~~~W~--~~~~~p-~~r~~-----~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 133 DPVAAKWS--EVKNLP-IKVYG-----HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp ETTTTEEE--EECCCS-SCEES-----CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred eCCCCCEe--ECCCCC-Ccccc-----cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence 88764321 111000 00111 11222 35555666653 24599999998764432111011 112223
Q ss_pred EEcCCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC--------------Cc
Q 004969 600 KFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG--------------TS 660 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D--------------g~ 660 (721)
.+ ++ .+++.|+.+ ..+.+||+.+.+...+...+......+++. .++..++.|+.+ ..
T Consensus 204 ~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 279 (318)
T 2woz_A 204 IH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVND 279 (318)
T ss_dssp EE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred EE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeee
Confidence 33 44 677777654 347789998876544433322221112222 356677776653 34
Q ss_pred EEEEEcCCC
Q 004969 661 MFVQSLRGD 669 (721)
Q Consensus 661 I~VWDl~g~ 669 (721)
+.+||+...
T Consensus 280 v~~yd~~~~ 288 (318)
T 2woz_A 280 IWKYEDDKK 288 (318)
T ss_dssp EEEEETTTT
T ss_pred EEEEeCCCC
Confidence 677777643
No 483
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.67 E-value=0.18 Score=45.76 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=41.4
Q ss_pred Eeeccccccc--ccccccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969 129 VLNLRSSRFR--KLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV 184 (721)
Q Consensus 129 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (721)
++|.+++.+. .+- .+-..+|.+|+|. +|.|+.|+++-|..||+|+.|.|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP-~~lp~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAFPVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSC-SCCCTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCC-CCCCcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 222 1244579999999 9999999999999999999999988743
No 484
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.64 E-value=8.9 Score=40.32 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=81.0
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC-----
Q 004969 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY----- 570 (721)
Q Consensus 499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~----- 570 (721)
...++|+|. ++++.++.+...|.|++++...... ..+... ..+..........++++|+ ++.++++..
T Consensus 18 ~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~g~~~--~~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFL-PDNHGMLITLRGGELRHWQAGKGLS--APLSGV-PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEEC-STTCCEEEEETTTEEEEEETTTEEC--CCCBSC-CCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEc-CCCCEEEEEeCCceEEEEeCCCcee--eEecCC-cccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 356889998 6777344556789999998543211 001100 0111122345689999986 566665532
Q ss_pred ---CCcEEEEECCCC--c--EEEE-Ecc-----ccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECC
Q 004969 571 ---SKNIALYDINSG--R--RLQV-FAD-----MHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLR 624 (721)
Q Consensus 571 ---Dg~IrlWDl~s~--~--~v~~-l~~-----~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlr 624 (721)
...|..|+...+ + .... +.. ........++|.|+| .+.++-+. .|.|.-+|..
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666533 1 1111 111 011224579999999 66665433 2456666665
Q ss_pred CCC------------ceeEEEecCCCCeEEEEEec-CCCEEEE
Q 004969 625 QKP------------IQPCYTASSSKGNVMVCFSP-DDHYLLG 654 (721)
Q Consensus 625 s~~------------~~~~~~~~~~~~~vsl~fSp-dg~~Las 654 (721)
... ...++. .++..+..++|+| +|+..++
T Consensus 173 G~~p~~npf~~~~~~~~~i~a-~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWS-YGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEE-ECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEE-EcCcCccceEEECCCCCEEEE
Confidence 320 111222 3566677899999 5655554
No 485
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=89.59 E-value=0.16 Score=48.86 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=49.1
Q ss_pred ceeeEEecccccccccccccccccccccchhccccc-cchhhhHHHHHhhcC----Ccchhhccceee
Q 004969 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET-RVGNLWTTIAALSKL----PSLAELRFQNWL 209 (721)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 209 (721)
.+|+.|+|..|. ||...-.-...||+|+.|++.++ +|.+ ..+++|+++ ++|.+|.+..|.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCC
Confidence 379999999665 99887777889999999999998 4776 356778876 589999887764
No 486
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.27 E-value=9.3 Score=38.94 Aligned_cols=185 Identities=10% Similarity=0.061 Sum_probs=91.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecCC-CCCCeEEEEEeeCCCCEEEEEeC----CC-------eEEEEEcCCCCCc
Q 004969 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSD----NG-------SLKLYDIRHMPPS 534 (721)
Q Consensus 467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H~~~V~sl~fsp~d~~~LaSgs~----DG-------tVrIWDi~~~~~~ 534 (721)
.+++.|+. .+..||..+++... ..... ....-.+++. .++..++.|+. ++ .+.+||..+.+-
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W- 90 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW- 90 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEE-
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-
Confidence 44555553 48899999887644 22111 1122233332 46777777773 12 166778766432
Q ss_pred ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCC
Q 004969 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSP 606 (721)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~ 606 (721)
..+..... .+ .....+.+ ++..++.||.+ ..+.+||..+.+-...-.-.. ...-..+. .++
T Consensus 91 -~~~~~~p~-~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~- 159 (318)
T 2woz_A 91 -VGLPPLPS-AR----CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNG- 159 (318)
T ss_dssp -EECSCBSS-CB----CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETT-
T ss_pred -EECCCCCc-cc----cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECC-
Confidence 11110000 00 11122222 56666677643 358899998776443211001 11111222 245
Q ss_pred cEEEEEEC------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969 607 SIFATSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD 669 (721)
Q Consensus 607 ~lLaSgs~------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~ 669 (721)
.+++.|+. -..+.+||+.+.+...+...+......+++. -++..++.|+.++ .+.+||+...
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 67777764 2358999999876544332222211112222 2567777776433 4667887643
No 487
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.82 E-value=22 Score=37.52 Aligned_cols=166 Identities=12% Similarity=0.108 Sum_probs=92.4
Q ss_pred CeEEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEEEeC---CCe
Q 004969 455 RPRQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIAGSD---NGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaSgs~---DGt 522 (721)
.|..-..++ +.++++..+ -.|.+.+|..+.+ ..+.+. ||...-..+... +....+++-+.. .+.
T Consensus 153 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k 228 (365)
T 2xzh_A 153 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 228 (365)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred eEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc-ccceee--eeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence 355556666 667665543 2478889998854 334444 553332222210 000112222222 268
Q ss_pred EEEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
++|-++................+.|.. .+--.++.+++..+.++....-|.+++||+.++.++..-+- ....|...
T Consensus 229 LhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI-S~d~iF~t 307 (365)
T 2xzh_A 229 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVT 307 (365)
T ss_dssp EEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEE
T ss_pred EEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc-CCCceEEe
Confidence 999998653111111111111122222 12356788889999999999999999999999999887764 55566655
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~ 626 (721)
+-+... .-++.-...|.|.--.+...
T Consensus 308 a~~~~~-~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 308 APHEAT-AGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEGGG-TEEEEEETTCEEEEEEECTT
T ss_pred cccCCC-CcEEEEcCCCEEEEEEECcc
Confidence 554443 23444446666655555443
No 488
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.30 E-value=9.4 Score=39.55 Aligned_cols=52 Identities=6% Similarity=0.071 Sum_probs=27.1
Q ss_pred cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC------cEEEEEcCCC
Q 004969 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT------SMFVQSLRGD 669 (721)
Q Consensus 617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg------~I~VWDl~g~ 669 (721)
.+.+||+.+.+...+-.++......+ +...+++.++.|+.++ .+.+++++++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV-SLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE-EEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred eEEEEecCCCceeeCCCCCCCcccce-eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 57899999887666554443222222 2334677777787543 2444566644
No 489
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.07 E-value=39 Score=37.03 Aligned_cols=166 Identities=12% Similarity=0.098 Sum_probs=94.4
Q ss_pred CeEEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEEEeC---CCe
Q 004969 455 RPRQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIAGSD---NGS 522 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaSgs~---DGt 522 (721)
.|..-..++ +.++++..+ -.|.+.+|..+.+. .+.+. ||...-..+... +.....+.-+.. .+.
T Consensus 152 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k 227 (494)
T 1bpo_A 152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (494)
T ss_dssp EEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred eEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc-cchhe--eeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence 455566677 677766433 24788899988543 33444 554433333221 000112333333 278
Q ss_pred EEEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI 599 (721)
++|.++................+.|.. .+--.++.+++..+.++....-|.+++||+.++.++..-+- ....|...
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF~t 306 (494)
T 1bpo_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVT 306 (494)
T ss_dssp EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEE
T ss_pred EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc-cCCceEEe
Confidence 999999654111111111111112222 12356788889999999999999999999999999887764 55566655
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969 600 KFSNHSPSIFATSSFDQDVKLWDLRQK 626 (721)
Q Consensus 600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~ 626 (721)
+.+... .-++.-...|.|.--.+...
T Consensus 307 ~~~~~~-~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 307 APHEAT-AGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEETTT-TEEEEEETTCEEEEEEECTT
T ss_pred cccCCC-CcEEEEccCceEEEEEEccc
Confidence 555444 23444446666655555443
No 490
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.98 E-value=13 Score=46.63 Aligned_cols=196 Identities=10% Similarity=0.117 Sum_probs=117.0
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (721)
Q Consensus 459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~ 538 (721)
.-.|| ..+.+|.-. ..++.|+|+++...++.... ...|.--.|- +.+.|+-.+. ..|.-|++.+...+.+..
T Consensus 71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred hccCC-CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEec--CCCeeEEEcC-CeEEEeccCCCCccHHHH
Confidence 33577 556666654 78999999998877766643 3567777885 4555555543 489999997643332222
Q ss_pred ccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEEccccCCCeEEEEEc--CCCCcEE
Q 004969 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIF 609 (721)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs--Pdg~~lL 609 (721)
..+.... ..+|..-..+++..+++..|- .|.+.+|....+. .+.+.| |.+....+... +....++
T Consensus 143 dR~~~L~----~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg-ha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 143 DRHSSLA----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hcchhcc----cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH-hHhhhheeccCCCCCCceEE
Confidence 2222111 245667777788888776652 4788899877433 334444 65544333332 1111233
Q ss_pred EEEEC---CCcEEEEECCCC-CceeEE-------EecC---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969 610 ATSSF---DQDVKLWDLRQK-PIQPCY-------TASS---SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG 668 (721)
Q Consensus 610 aSgs~---DgtIrIWDlrs~-~~~~~~-------~~~~---~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g 668 (721)
+-+.. .+.++|-++... ...+.+ .++. ..-++++..|+.-..+..-+.-|.+++||+..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 33322 268888888543 001111 1111 22345788888888888888999999999983
No 491
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.33 E-value=16 Score=36.41 Aligned_cols=154 Identities=10% Similarity=-0.003 Sum_probs=80.7
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi 528 (721)
.++.++|+| ++.+.++ .+|.+.-.+..++.. -..+-..+-.. -.++.|. +++.+.++ .||.|.-++-
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD-~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFD-PNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEEC-TTSCEEEE--ETTEEEEESC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEEC-CCCCEEEe--CCCEEEEeCC
Confidence 367899999 9887777 678766666544111 11221111111 3456665 67766666 5698877765
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc------EEEEEccccCCCeEEEEEc
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR------RLQVFADMHKEHINVVKFS 602 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~------~v~~l~~~h~~~V~sI~fs 602 (721)
.+... .........+.-.....+..|.+.|++...++. |+.++-+...++. ....+-...-..-.-+.|.
T Consensus 115 P~~~~--~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDT--DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTT--CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCC--CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 33221 111111112211222457889998888777666 7775444333221 1112211122334456799
Q ss_pred CCCCcEEEEEECCCcEEEEECC
Q 004969 603 NHSPSIFATSSFDQDVKLWDLR 624 (721)
Q Consensus 603 Pdg~~lLaSgs~DgtIrIWDlr 624 (721)
|++ .+.++. ++ ++|-..
T Consensus 191 ~~G-~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 191 SVG-TLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp TTS-CEEEEE--TT--EEEEES
T ss_pred CCC-cEEEEe--CC--eEEecC
Confidence 988 565555 66 444443
No 492
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.30 E-value=7.5 Score=45.08 Aligned_cols=157 Identities=6% Similarity=0.026 Sum_probs=81.3
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCccc
Q 004969 465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIR 536 (721)
Q Consensus 465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~ 536 (721)
++.+++.|+.+ ..+.+||..+.+....-........-.++.+ .++..++.||.++ .+.+||..+..-...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~--~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL--PDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC--TTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE--cCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 45677777753 3578899887655433211111111222222 3677888887655 688899887543211
Q ss_pred ccccCcceeEeccCCCeEEEEEecC-CCEEEEEeC--C-----CcEEEEECCCCc------EEEEEc--cccCCCeEEEE
Q 004969 537 GMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGY--S-----KNIALYDINSGR------RLQVFA--DMHKEHINVVK 600 (721)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~--D-----g~IrlWDl~s~~------~v~~l~--~~h~~~V~sI~ 600 (721)
...+....... ...++.+... +..++.||. + ..+.+||+.+.+ ....-. .........+.
T Consensus 529 ~~~g~~p~~r~----~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 529 TPKDEFFQNSL----VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp CCSSGGGGSCC----BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred cCCCCCCCccc----ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 11000000111 1133444444 445556654 2 458999998876 221111 10112223333
Q ss_pred EcCCCCcEEEEEECC--------CcEEEEECCCCCce
Q 004969 601 FSNHSPSIFATSSFD--------QDVKLWDLRQKPIQ 629 (721)
Q Consensus 601 fsPdg~~lLaSgs~D--------gtIrIWDlrs~~~~ 629 (721)
+ .++ .+++.|+.+ ..|.+||+.+....
T Consensus 605 ~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 605 I-TPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp E-ETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred e-CCC-EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3 325 677777743 45999999987553
No 493
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=82.04 E-value=0.3 Score=53.01 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=58.2
Q ss_pred cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (721)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (721)
|.+|+.|+|.++. ..+.+-...|-.=+.|+|.+ .+..++ .+..+.+|.+|.|. .++|+.|+.++|.| .+|+.
T Consensus 134 ~~~L~~i~l~~~i---~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~-~n~l~~I~~~aF~~-~~L~~ 207 (401)
T 4fdw_A 134 NSQIAKVVLNEGL---KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS-KTKITKLPASTFVY-AGIEE 207 (401)
T ss_dssp TCCCSEEECCTTC---CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT-TSCCSEECTTTTTT-CCCSE
T ss_pred cCCccEEEeCCCc---cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC-CCcceEechhhEee-cccCE
Confidence 4567888877641 11222222232234455543 444443 33355678888887 77888888888885 78888
Q ss_pred hccccccchhhhHHHHHhhcCCcchhhccc
Q 004969 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (721)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (721)
|.+-++ |..+ .-.|...+++|++|.|.
T Consensus 208 l~lp~~-l~~I--~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 208 VLLPVT-LKEI--GSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp EECCTT-CCEE--CTTTTTTCTTCCCEECC
T ss_pred EEeCCc-hhee--hhhHhhCCCCCCEEecC
Confidence 887644 4333 12466777777777553
No 494
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.25 E-value=18 Score=37.41 Aligned_cols=59 Identities=7% Similarity=0.059 Sum_probs=29.1
Q ss_pred cEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCC------cEEEEECCCCCceeEEEec
Q 004969 573 NIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQ------DVKLWDLRQKPIQPCYTAS 635 (721)
Q Consensus 573 ~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg------tIrIWDlrs~~~~~~~~~~ 635 (721)
.+.+||+.+.+- +..+.. ......++.+ ++ .+++.|+.++ .|.++++++++.......+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ-GRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp CCEEEECC---CEEEEECSS-CCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred eEEEEecCCCceeeCCCCCC-CcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 578999987553 333332 1122223333 45 6888888653 3556688887665444333
No 495
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.70 E-value=54 Score=33.57 Aligned_cols=189 Identities=8% Similarity=0.056 Sum_probs=100.2
Q ss_pred CCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--------------CeEEEEEc
Q 004969 465 ISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------------GSLKLYDI 528 (721)
Q Consensus 465 dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------------GtVrIWDi 528 (721)
++..|.... .++.|...+..... ...+.. ..+. -++ +++++|+-+... ..|+..++
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~--~i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAM--YIN-ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEE--EEE-ECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----Ccee--eEE-EcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 455555543 25666666665333 333321 1122 234 566766665542 46777777
Q ss_pred CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (721)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd 604 (721)
.+.+... +. .. .+..+++.++.++-+. ....|..-++.... ...+.. +.. .+++|+
T Consensus 96 dg~~~~~-----------l~-~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~-~~~----~~~~~~ 155 (302)
T 3s25_A 96 NGHGSTV-----------LD-PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN-HYL----FTCNTS 155 (302)
T ss_dssp TSCCCEE-----------EE-CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES-SCC----CCSEEE
T ss_pred CCCcceE-----------ee-cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC-CCc----eEeeEE
Confidence 7654311 10 11 1235667888888776 23456666766433 334432 322 456778
Q ss_pred CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC--cEEEEEcCCCccccc-ccCeEEE
Q 004969 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT--SMFVQSLRGDPFRDF-NMSILAA 681 (721)
Q Consensus 605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg--~I~VWDl~g~~l~~~-~~~V~~v 681 (721)
+..+..+......|.+-++..+....+ ..+ .....++|++.+|+-...++ .|..-++.|...... ...+ .
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l--~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~ 228 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALF--YDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E 228 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEE--ECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEE--eCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c
Confidence 855555554467888888877643323 222 22234669999988765443 566666665443322 2223 2
Q ss_pred EECCCCC
Q 004969 682 YTRPSSK 688 (721)
Q Consensus 682 ~fsP~~~ 688 (721)
.++|.+.
T Consensus 229 ~~~~~g~ 235 (302)
T 3s25_A 229 HYNVYGS 235 (302)
T ss_dssp EEEEETT
T ss_pred eEEECCC
Confidence 3666663
No 496
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=75.21 E-value=1.3e+02 Score=35.08 Aligned_cols=159 Identities=9% Similarity=-0.031 Sum_probs=78.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CC----CCCCeEEEEEeeCCCCEEEEEeCCCe----EEE
Q 004969 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FG----AMNSVLGLCWLKKYPSKLIAGSDNGS----LKL 525 (721)
Q Consensus 455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~----H~~~V~sl~fsp~d~~~LaSgs~DGt----VrI 525 (721)
+|.+|+++|.+...+.+++..|.|...+= .|+.=..+.. .+ ....|.+|++.|.+.+.++.+..... -.|
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence 69999999977788888888887766653 2433222321 11 12469999998655565655543211 334
Q ss_pred EEcCCCCCcccccccCcceeE-eccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEcc-----ccCCCeEE
Q 004969 526 YDIRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-----MHKEHINV 598 (721)
Q Consensus 526 WDi~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~-----~h~~~V~s 598 (721)
|--..+-.............. ......+..++++|.+. .++++...+.|. .....|+.=..+.. .....+..
T Consensus 95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCeEE
Confidence 433332222221110000000 00011245677777643 444444333321 12222322112211 01245788
Q ss_pred EEEcCCCCcEEEEEECC
Q 004969 599 VKFSNHSPSIFATSSFD 615 (721)
Q Consensus 599 I~fsPdg~~lLaSgs~D 615 (721)
+.++|..+..+..+..+
T Consensus 174 i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 174 VIFDPERNGTIYASATA 190 (789)
T ss_dssp EEECTTSTTCEEEEESS
T ss_pred EEECCCCCCEEEEEEcC
Confidence 99998654556666554
No 497
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=71.09 E-value=5.1 Score=42.37 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEc--CCCCcEEEEE-ECCCcEEEEECCCCCceeEEEecC--
Q 004969 562 DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIFATS-SFDQDVKLWDLRQKPIQPCYTASS-- 636 (721)
Q Consensus 562 ~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs--Pdg~~lLaSg-s~DgtIrIWDlrs~~~~~~~~~~~-- 636 (721)
++.+++++.||.|.-+|..+|+..+++......++....-. +.++..++.. +.||.+..+|..++..........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 45788899999999999999999999985211233221100 1121334343 589999999988874322222211
Q ss_pred CCCeEEEEEe-----------cCCCEEEEEeCCCcEEEEEcC-CCccccc
Q 004969 637 SKGNVMVCFS-----------PDDHYLLGKGSGTSMFVQSLR-GDPFRDF 674 (721)
Q Consensus 637 ~~~~vsl~fS-----------pdg~~Lasgs~Dg~I~VWDl~-g~~l~~~ 674 (721)
...+ +... ..+..+++|+.+|.++..|++ |+.+..+
T Consensus 90 ~~SP--~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSP--LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCS--EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccc--cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 1111 1111 145677888889999888876 5554443
No 498
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=70.18 E-value=44 Score=42.01 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=77.3
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (721)
Q Consensus 475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (721)
...|.|.|+.++..+...+. ....+| .+ |..+.++--. ..++.|+|+++... ...+....+|.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-~AdsAI----Mn-P~~~iiALra-g~~lQiFnl~~k~k----------lks~~~~e~Vv 109 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-SADSAI----MN-PASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVT 109 (1630)
T ss_pred CceEEEEECCCCCCcccccc-cchhhc----cC-CCcceEEEec-CCeEEEeehHHhhh----------hcccccCCCce
Confidence 34899999987665432221 222333 24 3445555443 67999999988543 12222334566
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEcccc----CCCeEEEEEcCCCCcEEEEEE------CCCcEEEEEC
Q 004969 555 SVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMH----KEHINVVKFSNHSPSIFATSS------FDQDVKLWDL 623 (721)
Q Consensus 555 sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h----~~~V~sI~fsPdg~~lLaSgs------~DgtIrIWDl 623 (721)
--.|-. ...++..+ +..|..|++.. ..+++.|.. | ...|..-..+++....+++|- -.|.+.+|..
T Consensus 110 fWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR-~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 110 FWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred EEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhc-chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 667743 33444333 46799999974 345555543 4 345666667777743444443 3578889988
Q ss_pred CCCC
Q 004969 624 RQKP 627 (721)
Q Consensus 624 rs~~ 627 (721)
..+.
T Consensus 187 er~~ 190 (1630)
T 1xi4_A 187 DRKV 190 (1630)
T ss_pred cccc
Confidence 7754
No 499
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=69.90 E-value=1e+02 Score=31.46 Aligned_cols=176 Identities=8% Similarity=0.056 Sum_probs=93.3
Q ss_pred EeCCCCCEEEEEEC--------------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----CCCe
Q 004969 461 YHPSISCLMVFGTL--------------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----DNGS 522 (721)
Q Consensus 461 fsP~dg~~LasGs~--------------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----~DGt 522 (721)
+++ ++++|+-... .+.|+..++..++...... ... ..|+ +++++|+-.. ....
T Consensus 60 i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-----~~~--~~~s-~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 60 INA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-----DPC--IYAS-LIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-----SCE--EEEE-EETTEEEEEEESSSSCEE
T ss_pred EEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-----CCc--cEEE-EeCCEEEEEeecCCCCce
Confidence 466 5666665543 2467777877665333222 122 2455 3566666554 3345
Q ss_pred EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (721)
Q Consensus 523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f 601 (721)
|...++.+... ..+.. + .+ ..+++.++.|+-++. ...|..-++..+.....+.+ ... ..+
T Consensus 131 Iy~~~~dGs~~--~~lt~--------~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~ 191 (302)
T 3s25_A 131 LYRIRIDGEEK--KKIKN--------H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV 191 (302)
T ss_dssp EEEEETTSCCC--EEEES--------S--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred EEEEECCCCCe--EEEeC--------C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence 55556654322 11111 1 11 234567888887765 57888888876654444432 222 345
Q ss_pred cCCCCcEEEEEECC-CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCc
Q 004969 602 SNHSPSIFATSSFD-QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS--GTSMFVQSLRGDP 670 (721)
Q Consensus 602 sPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~--Dg~I~VWDl~g~~ 670 (721)
.|++..++.+...+ ..|..-++...... .+... .+ ..|+|++.+|+-++. .+.|..-++.|..
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~~~---~Lt~~--~~-~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNPNPV---VLTEA--NI-EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSCCCE---ECSCS--CE-EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCCCeE---EEeCC--Cc-ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 68885444444333 35656666654322 12211 11 358888998886532 3566666777643
No 500
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.75 E-value=1.1e+02 Score=31.86 Aligned_cols=219 Identities=8% Similarity=-0.059 Sum_probs=0.0
Q ss_pred CeEEEEEeCCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC----------------CeEEEEEeeCCCCEEEEE
Q 004969 455 RPRQFEYHPSI-SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN----------------SVLGLCWLKKYPSKLIAG 517 (721)
Q Consensus 455 ~V~~lafsP~d-g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~----------------~V~sl~fsp~d~~~LaSg 517 (721)
.|.++++.|.+ ...+.+|+..+.|...+-.............+.. .|.+|.+.|.+...++.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Q ss_pred eCCCeEEEEEcCCCCCcccccccCcceeEeccCCC-------------eEEEEEecCCCEEEEEeCCCcEEEEECCCCcE
Q 004969 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ-------------LTSVHVNSMDELFLASGYSKNIALYDINSGRR 584 (721)
Q Consensus 518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~-------------V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~ 584 (721)
..++.|...+-.. ..-......... +.++.++|.+...+..+..+.|...+-....-
T Consensus 196 ~~~ggl~~s~DgG----------~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW 265 (394)
T 3b7f_A 196 MSSGGVFESTDAG----------TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVW 265 (394)
T ss_dssp EETBEEEEESSTT----------SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEE
T ss_pred ECCCCEEEECCCC----------CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcc
Q ss_pred EEEEccccC---CCeEEEEEcCCCCcEEEEEEC-----------CCcEEEEECCCCCceeEEEecCCCCe--------EE
Q 004969 585 LQVFADMHK---EHINVVKFSNHSPSIFATSSF-----------DQDVKLWDLRQKPIQPCYTASSSKGN--------VM 642 (721)
Q Consensus 585 v~~l~~~h~---~~V~sI~fsPdg~~lLaSgs~-----------DgtIrIWDlrs~~~~~~~~~~~~~~~--------vs 642 (721)
......... ..+..+.++|..+..+..+.. ++...+|....+-..-.....+-... ..
T Consensus 266 ~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~ 345 (394)
T 3b7f_A 266 KRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQA 345 (394)
T ss_dssp ECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBS
T ss_pred eECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEE
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEEcCCCccccccc---CeEEEEE
Q 004969 643 VCFSP-DDHYLLGKGSGTSMFVQSLRGDPFRDFNM---SILAAYT 683 (721)
Q Consensus 643 l~fSp-dg~~Lasgs~Dg~I~VWDl~g~~l~~~~~---~V~~v~f 683 (721)
++++| +...|+.++.++.|+.-.=.|........ .+.++.|
T Consensus 346 ~~~~p~~~~~l~~g~~~g~l~~S~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 346 MTADAHAPVGVYFGTTGGEIWASADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp EEECCSSSCCEEEECTTSCEEEESSTTSBCEEEECSCSCEEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEECCCCCCceEcccCCCCeeEEEE
Done!