BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004970
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/672 (79%), Positives = 571/672 (84%), Gaps = 28/672 (4%)
Query: 75 AVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNP 133
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNP
Sbjct: 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNP 61
Query: 134 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV-------------------------- 167
KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV
Sbjct: 62 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPG 121
Query: 168 -QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS 226
+VTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA S
Sbjct: 122 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACS 181
Query: 227 LAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286
LAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRAA
Sbjct: 182 LAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241
Query: 287 IKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVP 346
IKEAKAVTDKPTLI+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VP
Sbjct: 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVP 301
Query: 347 EDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTP 406
EDVK HWSRH EGA LEA+WN SI +G+LP GW ALP YTP
Sbjct: 302 EDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTP 361
Query: 407 ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGV 466
ESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFGV
Sbjct: 362 ESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGV 421
Query: 467 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 526
REHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGE
Sbjct: 422 REHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481
Query: 527 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 586
DGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL G
Sbjct: 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPG 541
Query: 587 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWEL 646
TSI+GVEKG Y ISDNS+GNKPD+I++GTGS RK GK VRVVSFVSWEL
Sbjct: 542 TSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWEL 601
Query: 647 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 706
FDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+
Sbjct: 602 FDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEY 661
Query: 707 GITAEAVITAAK 718
GIT E++I AAK
Sbjct: 662 GITVESIIAAAK 673
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 573 bits (1478), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/663 (47%), Positives = 403/663 (60%), Gaps = 41/663 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYD-------------------------SVQVTTGPLGQGMANAVGLA 185
L Y++LHL GYD V+VTTGPLGQG++NAVG+A
Sbjct: 70 AVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMA 129
Query: 186 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245
+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN I
Sbjct: 130 MAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI 189
Query: 246 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305
+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++TTT
Sbjct: 190 TIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTT 249
Query: 306 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GATL 363
IG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 250 IGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEA 308
Query: 364 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 423
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 309 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 368
Query: 424 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICNGI 478
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI NGI
Sbjct: 369 VYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGI 428
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538
+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE LA
Sbjct: 429 SAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLA 488
Query: 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 598
FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG Y+
Sbjct: 489 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 548
Query: 599 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 658
+ D ++ PD+IL+ TGS RVVS + FD+Q Y+ SV
Sbjct: 549 LQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSV 605
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 718
LP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V A+
Sbjct: 606 LPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQ 661
Query: 719 EVC 721
+
Sbjct: 662 KTI 664
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 573 bits (1478), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/663 (47%), Positives = 403/663 (60%), Gaps = 41/663 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 9 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 67
Query: 151 GCMLQYALLHLAGYD-------------------------SVQVTTGPLGQGMANAVGLA 185
L Y++LHL GYD V+VTTGPLGQG++NAVG+A
Sbjct: 68 AVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMA 127
Query: 186 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245
+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN I
Sbjct: 128 MAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI 187
Query: 246 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305
+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++TTT
Sbjct: 188 TIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTT 247
Query: 306 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GATL 363
IG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 248 IGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEA 306
Query: 364 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 423
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 307 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 366
Query: 424 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICNGI 478
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI NGI
Sbjct: 367 VYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGI 426
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538
+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE LA
Sbjct: 427 SAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLA 486
Query: 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 598
FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG Y+
Sbjct: 487 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 546
Query: 599 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 658
+ D ++ PD+IL+ TGS RVVS + FD+Q Y+ SV
Sbjct: 547 LQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSV 603
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 718
LP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V A+
Sbjct: 604 LPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQ 659
Query: 719 EVC 721
+
Sbjct: 660 KTI 662
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 323/660 (48%), Positives = 413/660 (62%), Gaps = 35/660 (5%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
S+NTIR L++DA+EKANSGHPG P G AP + L+ + ++NP NP WFNRDRFVLSAGH
Sbjct: 33 SINTIRTLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSAGH 92
Query: 151 GCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGL 184
G L Y+LLHL+GYD V TTGPLGQG+A AVG
Sbjct: 93 GSXLLYSLLHLSGYDVTXDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGX 152
Query: 185 ALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH 244
A AE+HLAA+YN+ IVDHYTY I GDG EG++ EASSLA HL LG+L+ YD N
Sbjct: 153 AXAERHLAAKYNRDAYNIVDHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSND 212
Query: 245 ISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304
IS+DGD +F+E+V+ R++ GW VI V++GN + I AI+EAKA +PTLI V T
Sbjct: 213 ISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGND-IEAIAKAIEEAKADEKRPTLIEVRT 271
Query: 305 TIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP-FHVPEDVKKHWSRHVAE-GAT 362
TIGFGSPNK+ + HGS LG +E T++ W E FHV E+V +++ + V + G T
Sbjct: 272 TIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGET 331
Query: 363 LEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 422
+AEWN + +G LP GWE+ LPTY S A ATRN S +N
Sbjct: 332 AQAEWNTXLGEYAQAYPELANELQAAXNGLLPEGWEQNLPTYELGSKA-ATRNSSGAVIN 390
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
A+A+++P GGSADLA SN T DF +D +N+ +GVRE GA NGIALH
Sbjct: 391 AIAESVPSFFGGSADLAGSNKTYXNNEKDFTRDDYSGKNIWYGVREFAXGAAXNGIALHG 450
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
GL Y TFFVF+DY+R AIR++AL + V YV THDSI +GEDGPTH+PIE LA+ RA
Sbjct: 451 -GLKTYGGTFFVFSDYLRPAIRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRA 509
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE---KGAYII 599
PN+ ++RPADGNE+ A+++A+ + +P+ L L+RQ LP L G D E KGAY++
Sbjct: 510 XPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVV 569
Query: 600 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL 659
S S DVIL+ TGS G VVS S + F+ Q+ YKESVL
Sbjct: 570 S-ASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSXPSXDRFEAQTAEYKESVL 628
Query: 660 PAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 719
P AV+ R +IE G+TFGW + VG +G +GID FGASAP KI +E+G T E V+ KE
Sbjct: 629 PKAVTKRFAIEXGATFGWHRYVGLEGDVLGIDTFGASAPGEKIXEEYGFTVENVVRKVKE 688
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 570 bits (1468), Expect = e-162, Method: Compositional matrix adjust.
Identities = 314/663 (47%), Positives = 402/663 (60%), Gaps = 41/663 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYD-------------------------SVQVTTGPLGQGMANAVGLA 185
L Y++LHL GYD V+VTTGPLGQG++NAVG+A
Sbjct: 70 AVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMA 129
Query: 186 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245
+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN I
Sbjct: 130 MAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI 189
Query: 246 SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305
+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++TTT
Sbjct: 190 TIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTT 249
Query: 306 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GATL 363
IG+GS + A S+SV G+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 250 IGYGSLH-AGSHSVAGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEA 308
Query: 364 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 423
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 309 NNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLED 368
Query: 424 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-----EERNVRFGVREHGMGAICNGI 478
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI NGI
Sbjct: 369 VYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGI 428
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538
+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE LA
Sbjct: 429 SAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLA 488
Query: 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 598
FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG Y+
Sbjct: 489 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 548
Query: 599 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 658
+ D ++ PD+IL+ TGS RVVS + FD+Q Y+ SV
Sbjct: 549 LQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSV 605
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 718
LP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V A+
Sbjct: 606 LPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQ 661
Query: 719 EVC 721
+
Sbjct: 662 KTI 664
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 308/665 (46%), Positives = 405/665 (60%), Gaps = 44/665 (6%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 4 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMA 179
+S GHGC LQYALLH+AGY+ V+VTTGPLGQG+A
Sbjct: 64 MSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIA 123
Query: 180 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 239
NAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 124 NAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVI 183
Query: 240 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299
YD N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP +
Sbjct: 184 YDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKM 243
Query: 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVA 358
I TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 244 IVQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHID 302
Query: 359 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 418
+ + + W + G+LP+GWE LPT S A ATR S+
Sbjct: 303 KCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT---NSSAIATRKASE 359
Query: 419 TCLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTPEERNVRFGVREHGMGAICN 476
CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI N
Sbjct: 360 NCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILN 419
Query: 477 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536
G+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E
Sbjct: 420 GLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVEL 478
Query: 537 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 596
+A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV GA
Sbjct: 479 VAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGA 538
Query: 597 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGK-AVRVVSFVSWELFDEQSDAYK 655
Y + D PD+ L+ S G+ VRVVS ELFD Q D Y+
Sbjct: 539 YSVVD-----VPDLQLVIVASGSEVSLAVDAAKALSGELRVRVVSMPCQELFDAQPDTYR 593
Query: 656 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 715
++VLPA V VS+EA +FGWEK + +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 594 QAVLPAGVPV-VSVEAYVSFGWEKYSHAH---VGMSGFGASAPAGVLYKKFGITVEEVVR 649
Query: 716 AAKEV 720
+E+
Sbjct: 650 TGREL 654
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 298/660 (45%), Positives = 396/660 (60%), Gaps = 38/660 (5%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
ML Y+LLHL GYD V+ TTGPLGQG+ANAVG+A+
Sbjct: 69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAI 128
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN IS
Sbjct: 129 AEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS 188
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+ T I
Sbjct: 189 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDA-ASIKRAVEEARAVTDKPSLLMCKTII 247
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 248 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 306
Query: 367 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 422
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 307 WNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIE 366
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 367 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLHG 425
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 426 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 484
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIIS 600
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 544
Query: 601 DNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 660
D +P++I I TGS G RVVS S + FD+Q AY+ESVLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 661 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE+
Sbjct: 603 KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 662
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust.
Identities = 298/660 (45%), Positives = 396/660 (60%), Gaps = 38/660 (5%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
ML Y+LLHL GYD V+ TTGPLGQG+ANAVG+A+
Sbjct: 68 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMAI 127
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN IS
Sbjct: 128 AEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS 187
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+ T I
Sbjct: 188 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAA-SIKRAVEEARAVTDKPSLLMCKTII 246
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 247 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 305
Query: 367 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 422
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 306 WNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIE 365
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 366 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLHG 424
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 425 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 483
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIIS 600
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 484 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 543
Query: 601 DNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 660
D +P++I I TGS G RVVS S + FD+Q AY+ESVLP
Sbjct: 544 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 601
Query: 661 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE+
Sbjct: 602 KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 661
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/652 (46%), Positives = 394/652 (60%), Gaps = 42/652 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
SVN IRFLA+DAVEKA SGHPG P G AP+ ++L+ EV R+NP +P W +RDRFVLSAGH
Sbjct: 11 SVNAIRFLAIDAVEKARSGHPGXPXGXAPLAYLLFREVXRHNPLDPDWPDRDRFVLSAGH 70
Query: 151 GCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGL 184
G L YA+LHL GYD V+VTTGPLGQG++ AVGL
Sbjct: 71 GSXLLYAVLHLTGYDLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGL 130
Query: 185 ALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH 244
ALAE+ LAA +N+P + +VDHYTYV+ DG EG++ EA+SLAGH GL KLI F+DDN
Sbjct: 131 ALAERKLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDNR 190
Query: 245 ISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304
ISIDG T++AFTE+V R+ GW + V++ N + +R AIK AK + ++PTLI V +
Sbjct: 191 ISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAIKLAK-LDERPTLIAVRS 248
Query: 305 TIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 364
IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H +G +
Sbjct: 249 HIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHXDXR-EKGRAWQ 306
Query: 365 AEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNAL 424
W G+LP E+ P ATR S LN L
Sbjct: 307 EAWEKALEAYARAYPDLHQELXRRLRGELPPLPEEPPSFDKP----IATRAASGRALNLL 362
Query: 425 AKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPG 484
A LP LLGGSADL SN T + DF + P R + FGVREH GAI NG+ LH G
Sbjct: 363 APRLPELLGGSADLTPSNNTKAEGXEDFSRANPLGRYLHFGVREHAXGAILNGLNLHG-G 421
Query: 485 LIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 544
Y TF VF+DY R AIR++AL ++V THDSI LGEDGPTHQP+EHL S RA P
Sbjct: 422 YRAYGGTFLVFSDYXRPAIRLAALXGVPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAXP 481
Query: 545 NILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS 604
N+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G Y++ D
Sbjct: 482 NLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV-- 539
Query: 605 GNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVS 664
+P +L+ TGS R+ G VRVVS S+ELF Q +AY++ VLP +
Sbjct: 540 -EEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLP 598
Query: 665 ARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 716
V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V A
Sbjct: 599 V-VAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEA 646
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 308/678 (45%), Positives = 387/678 (57%), Gaps = 44/678 (6%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPL 174
RDRFVLS GHG ML Y+LLHL GYD V+ TTGPL
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPL 157
Query: 175 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 234
GQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDGC MEGI++EA SLAG L L
Sbjct: 158 GQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLN 217
Query: 235 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 294
KLIA YDDN ISIDGD F ++ KRFE GW+VI NG+ A K + +
Sbjct: 218 KLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--S 275
Query: 295 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWS 354
DKP+LI T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 276 DKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWD 335
Query: 355 RHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLP----AGWEKALPTYTPESPA 410
A G E +WN +G LP A +
Sbjct: 336 AKEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGET 394
Query: 411 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ--KDTPEER---NVRFG 465
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +G
Sbjct: 395 VATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYG 454
Query: 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 525
VRE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGLG
Sbjct: 455 VREFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLG 513
Query: 526 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 585
EDGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L A
Sbjct: 514 EDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFNA 572
Query: 586 GT--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFV 642
T + VEKG Y++ D + +ILI TGS + G A RVVS
Sbjct: 573 RTDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMP 632
Query: 643 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 702
S ++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG +
Sbjct: 633 SSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVL 691
Query: 703 YKEFGITAEAVITAAKEV 720
+K FG T E VI AK V
Sbjct: 692 FKHFGFTVEHVIETAKAV 709
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 307/679 (45%), Positives = 386/679 (56%), Gaps = 44/679 (6%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPL 174
RDRFVLS GHG ML Y+LLHL GYD V+ TTGPL
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPL 157
Query: 175 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 234
GQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDG MEGI++EA SLAG L L
Sbjct: 158 GQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKLN 217
Query: 235 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 294
KLIA YDDN ISIDGD F ++ KRFE GW+VI NG+ A K + +
Sbjct: 218 KLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--S 275
Query: 295 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWS 354
DKP+LI T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 276 DKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWD 335
Query: 355 RHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLP----AGWEKALPTYTPESPA 410
A G E +WN +G LP A +
Sbjct: 336 AKEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGET 394
Query: 411 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ--KDTPEER---NVRFG 465
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +G
Sbjct: 395 VATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYG 454
Query: 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 525
VRE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGLG
Sbjct: 455 VREFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLG 513
Query: 526 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 585
EDGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L A
Sbjct: 514 EDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFNA 572
Query: 586 GT--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFV 642
T + VEKG Y++ D + +ILI TGS + G A RVVS
Sbjct: 573 RTDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMP 632
Query: 643 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 702
S ++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG +
Sbjct: 633 SSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVL 691
Query: 703 YKEFGITAEAVITAAKEVC 721
+K FG T E VI AK V
Sbjct: 692 FKHFGFTVEHVIETAKAVL 710
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/663 (42%), Positives = 371/663 (55%), Gaps = 46/663 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LA DAV+K +GHPG M AP+ + L+ MR++P + +W RDRFVLSAGH
Sbjct: 26 AVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGH 85
Query: 151 GCMLQYALLHLAGY--------------------------DSVQVTTGPLGQGMANAVGL 184
+ Y L+L G+ V++TTGPLGQG+A+AVG+
Sbjct: 86 SSLTLYIQLYLGGFGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGM 145
Query: 185 ALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 241
A+A ++ ++ +P DHY YVI DG EG+ +EASSLA LG LI FYD
Sbjct: 146 AMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYD 205
Query: 242 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301
N ISI+ DT IA E+ R+ GWHV V+ G I AI A+AVTD+P+ I
Sbjct: 206 RNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVG-IEEAIANAQAVTDRPSFIA 264
Query: 302 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEG 360
+ T IG+ +PN ++ HG+ALG EV A +K +G+ P + F V EDV H VA G
Sbjct: 265 LRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARG 324
Query: 361 ATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTC 420
W + + +LP GW+ LP + P S A ATR S
Sbjct: 325 KQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAV 384
Query: 421 LNALAKTLPGLLGGSADLASSNMTLLK---MFGDFQKDTPEE------RNVRFGVREHGM 471
L+AL LP L GGSADLA SN T +K FG T E R + FGVREH M
Sbjct: 385 LSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAM 444
Query: 472 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH 531
GAI +GI LH P Y TF F+DYMR A+R++AL + IYV THDSIGLGEDGPTH
Sbjct: 445 GAILSGIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH 503
Query: 532 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTSI 589
QPIEHL++ RA+P + ++RPAD NETA A++ +A R P L L+RQ +P L GT
Sbjct: 504 QPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDA 563
Query: 590 DGVEKGAYIISDN---SSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWEL 646
+GV +G Y++SD G +PDVILI TGS RVVS E
Sbjct: 564 EGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEW 623
Query: 647 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 706
F+ Q Y+++VLP VSARV++EAG W ++VG G+ + I+ +G SA +++E+
Sbjct: 624 FEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREY 683
Query: 707 GIT 709
G T
Sbjct: 684 GFT 686
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 285/658 (43%), Positives = 373/658 (56%), Gaps = 50/658 (7%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IRFL++DA KA SGHPG P G A + +L+ + +++NP NP+W NRDRFVLS GHG
Sbjct: 11 NAIRFLSIDATLKAKSGHPGXPXGXADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGS 70
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
L Y+LLHL GYD V+ TTGPLGQG+ANAVG AL
Sbjct: 71 XLLYSLLHLTGYDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGXAL 130
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
EK L+ RYN PD +++DH+TYV LGDG EG+++EA SLAG LGL KL+AF+DDN+IS
Sbjct: 131 GEKLLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNIS 190
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDGDT+ F++N +RF GWHVI +G+ + I AI EA + KPTLI T I
Sbjct: 191 IDGDTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPTLICCKTVI 249
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +G LEA
Sbjct: 250 GFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEAN 308
Query: 367 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTP---ESPAE-ATRNLSQTCLN 422
W + S +LP G E A+ Y +P + ATR SQ L
Sbjct: 309 WQ--GQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQXVLE 366
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--RNVRFGVREHGMGAICNGIAL 480
L K P GGSADL SN T G + +E + +GVRE G AI NG++L
Sbjct: 367 VLCKNXPEXFGGSADLTGSNNT--NWSGSVWLNNTQEGANYLSYGVREFGXAAIXNGLSL 424
Query: 481 HSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 540
+ G+ PY TF VF+DY R AIR SAL + V++V +HDSIGLGEDGPTHQPIEH+ S
Sbjct: 425 YG-GIKPYGGTFLVFSDYSRNAIRXSALXKQPVVHVXSHDSIGLGEDGPTHQPIEHVPSL 483
Query: 541 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYI 598
R +PN+ + RPAD ET A+K AV ++ PS+ L+RQ L + T + + +G Y+
Sbjct: 484 RLIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQNLXPVVQTQHQVANIARGGYL 543
Query: 599 ISDNSSGNKPD--VILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 656
+ DN PD + ++ TGS K G + V S E+F Q+ YK+
Sbjct: 544 VKDN-----PDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKK 598
Query: 657 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI-GIDRFGASAPAGKIYKEFGITAEAV 713
+V+ + A V +E W K G + GI FG SAPA ++K FG T E +
Sbjct: 599 TVIKDDIPA-VFVEXAQPDXWYKYXPKAGGEVKGIYSFGESAPAEDLFKRFGFTVENI 655
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 250/661 (37%), Positives = 347/661 (52%), Gaps = 58/661 (8%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ + ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W N
Sbjct: 2 NAXNIQILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYD-------------------------SVQVTTGPLG 175
RDR V S GH L Y+ LHL+GYD V++ TGPLG
Sbjct: 61 RDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLG 120
Query: 176 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 235
QG+ANAVG A A K N ++++DH Y + GDG EGI+ EA SLAG L
Sbjct: 121 QGVANAVGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDN 177
Query: 236 LIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTD 295
I YD N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK T
Sbjct: 178 FILIYDSNNISIEGDVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKST- 234
Query: 296 KPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWS 354
KP LI TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K +
Sbjct: 235 KPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFE 294
Query: 355 RHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATR 414
V G EA+W + P K L ATR
Sbjct: 295 SAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------ATR 344
Query: 415 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 474
+ + LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH AI
Sbjct: 345 DSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXAAI 400
Query: 475 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 534
N A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPI
Sbjct: 401 NNAFARYGI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPI 459
Query: 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEK 594
E L++FRA PN L RPADG E A+++A+ N PS LSRQKL L V+
Sbjct: 460 EQLSTFRAXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKN 518
Query: 595 GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAY 654
GAY++ ++ L+ +GS K G A VVS +ELF++Q AY
Sbjct: 519 GAYLLKESKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAY 575
Query: 655 KESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 714
+E +L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 576 QERLLKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLV 629
Query: 715 T 715
Sbjct: 630 N 630
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 250/655 (38%), Positives = 345/655 (52%), Gaps = 58/655 (8%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR V
Sbjct: 5 ILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVF 63
Query: 147 SAGHGCMLQYALLHLAGYD-------------------------SVQVTTGPLGQGMANA 181
S GH L Y+ LHL+GYD V++ TGPLGQG+ANA
Sbjct: 64 SGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANA 123
Query: 182 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 241
VG A A K N ++++DH Y + GDG EGI+ EA SLAG L I YD
Sbjct: 124 VGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYD 180
Query: 242 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301
N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK T KP LI
Sbjct: 181 SNNISIEGDVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKST-KPCLII 237
Query: 302 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEG 360
TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K + V G
Sbjct: 238 AKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELG 297
Query: 361 ATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTC 420
EA+W + P K L ATR+ +
Sbjct: 298 DLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------ATRDSNGEI 347
Query: 421 LNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 480
LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH AI N A
Sbjct: 348 LNVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXAAINNAFAR 403
Query: 481 HSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 540
+ +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L++F
Sbjct: 404 YGI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTF 462
Query: 541 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIIS 600
RA PN L RPADG E A+++A+ N PS LSRQKL L V+ GAY++
Sbjct: 463 RAXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLK 521
Query: 601 DNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 660
++ L+ +GS K G A VVS +ELF++Q AY+E +L
Sbjct: 522 ESKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQERLLK 578
Query: 661 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 715
V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 579 GEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVN 627
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 158/672 (23%), Positives = 262/672 (38%), Gaps = 110/672 (16%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 13 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 72
Query: 148 AGHGCMLQYALLHLAGYDS------------------------VQVTTGPLGQGMANAVG 183
GH + YA+ AG+ + V TG LGQG+ A G
Sbjct: 73 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACG 132
Query: 184 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 243
+A K+ + + Y +LGDG EG EA + A L L+A D N
Sbjct: 133 MAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDIN 183
Query: 244 HISIDGDTEIAFTENV-DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
+ + ++ KR E GWH I V +G++ +++ A +AK +PT I
Sbjct: 184 RLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFGQAK---HQPTAIIA 238
Query: 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 362
T G G + S HG L P ++ E + + +
Sbjct: 239 KTFKGRGITGVEDKESWHGKPL-----------------PKNMAEQIIQEIYSQIQSKKK 281
Query: 363 LEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 422
+ A I++ ++P +LP+Y ATR L
Sbjct: 282 ILA-----------TPPQEDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQALA 324
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
L ++ D +S + + F+K+ P +R + + E M +I G A +
Sbjct: 325 KLGHASDRIIALDGDTKNSTFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCATRN 378
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
+P+C+TF F IR++A+ E+ + +H + +GEDGP+ +E LA FR+
Sbjct: 379 -RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRS 437
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 602
+P + P+DG T A ++A AN K + SR + + + D A ++ +
Sbjct: 438 VPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKS 496
Query: 603 SSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQ------------ 650
V +IG G +K +RV+ + + D +
Sbjct: 497 KDDQ---VTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGR 553
Query: 651 ----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 706
D Y E + AVS+ V E G T + ++R S ++ K F
Sbjct: 554 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTH----------LAVNRVPRSGKPAELLKMF 603
Query: 707 GITAEAVITAAK 718
GI +A+ A +
Sbjct: 604 GIDRDAIAQAVR 615
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 158/672 (23%), Positives = 262/672 (38%), Gaps = 110/672 (16%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 11 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 70
Query: 148 AGHGCMLQYALLHLAGYDS------------------------VQVTTGPLGQGMANAVG 183
GH + YA+ AG+ + V TG LGQG+ A G
Sbjct: 71 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACG 130
Query: 184 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 243
+A K+ + + Y +LGDG EG EA + A L L+A D N
Sbjct: 131 MAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDIN 181
Query: 244 HISIDGDTEIAFTENV-DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
+ + ++ KR E GWH I V +G++ +++ A +AK +PT I
Sbjct: 182 RLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFGQAK---HQPTAIIA 236
Query: 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 362
T G G + S HG L P ++ E + + +
Sbjct: 237 KTFKGRGITGVEDKESWHGKPL-----------------PKNMAEQIIQEIYSQIQSKKK 279
Query: 363 LEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 422
+ A I++ ++P +LP+Y ATR L
Sbjct: 280 ILA-----------TPPQEDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQALA 322
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
L ++ D +S + + F+K+ P +R + + E M +I G A +
Sbjct: 323 KLGHASDRIIALDGDTKNSTFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCATRN 376
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
+P+C+TF F IR++A+ E+ + +H + +GEDGP+ +E LA FR+
Sbjct: 377 -RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRS 435
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 602
+P + P+DG T A ++A AN K + SR + + + D A ++ +
Sbjct: 436 VPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKS 494
Query: 603 SSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQ------------ 650
V +IG G +K +RV+ + + D +
Sbjct: 495 KDDQ---VTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGR 551
Query: 651 ----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 706
D Y E + AVS+ V E G T + ++R S ++ K F
Sbjct: 552 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTH----------LAVNRVPRSGKPAELLKMF 601
Query: 707 GITAEAVITAAK 718
GI +A+ A +
Sbjct: 602 GIDRDAIAQAVR 613
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 30/126 (23%)
Query: 141 RDRFVLSAGH---------GCMLQYALLH----LAGYDSVQ------VTTGPLGQGMANA 181
RDR + GH G Q A + ++G+ V +T G + NA
Sbjct: 73 RDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNA 132
Query: 182 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 241
+G+ALA D + D + ++GDG G+A A + G +G K++ +
Sbjct: 133 LGMALAR----------DAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGR-KMLIVLN 181
Query: 242 DNHISI 247
DN +SI
Sbjct: 182 DNEMSI 187
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 451 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 507
+F + P R + G+ E G+AL G+ P A + F RA ++ A
Sbjct: 357 EFSRVHPH-RYLDVGIAEEVAVTTAAGMALQ--GMRPVVAIYSTF--LQRAYDQVLHDVA 411
Query: 508 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 564
+ V + + I +G DG TH + L+ R++P + + P D E G K A
Sbjct: 412 IEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA 467
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 264 EGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS--PNKANSYSV 319
EGLG H +K N Y+ +R EA A+ P V+ ++GF PN + +Y +
Sbjct: 16 EGLGSHERAIKYLNQDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGI 73
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 409 PAEATRNLSQTCLNALAKTLPGLLGGSADLA---SSNMTLLKMFGDFQKDTPEERNVRFG 465
P+ LS + L PG++ G D + S LLK GD +ER++ G
Sbjct: 142 PSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGDLAILIGDERDLARG 201
Query: 466 VREHGMGAICNGIA 479
VR G GAI +G+A
Sbjct: 202 VRLGGQGAI-SGVA 214
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 697
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 697
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 697
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT---LIRVTTTIGFGSPNKAN 315
VD + G G +NG + ++ I+ A VT+ T LI+ I G P
Sbjct: 265 VDIGYRGAGTFEFLFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIK 324
Query: 316 SYSVH--GSALGAKEVDATRKNLGWP----YEPFHVPEDVKKHWSRHVAEGATLEAEWN 368
VH G A+ + ++A N P FH P W H+ G T+ ++
Sbjct: 325 QEEVHVRGHAVECR-INAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYD 382
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 451 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 507
+F + P+ R + E G+A+ G P A + F RA ++ A
Sbjct: 354 EFSRKFPD-RYFDVAIAEQHAVTFAAGLAIG--GYKPIVAIYSTF--LQRAYDQVLHDVA 408
Query: 508 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 556
+ + V++ + I +G DG THQ L+ R +P ++ P+D NE
Sbjct: 409 IQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEXVIXTPSDENE 456
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT---LIRVTTTIGFGSPNKAN 315
VD + G G +NG + ++ I+ VT+ T LI+ I G P
Sbjct: 285 VDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIK 344
Query: 316 SYSVH--GSALGAKEVDATRKNLGWP----YEPFHVPEDVKKHWSRHVAEGATLEAEWN 368
VH G A+ + ++A N P FH P W H+ G T+ ++
Sbjct: 345 QEEVHVRGHAVECR-INAEDPNTFLPSPGKITRFHAPGGAGVRWESHIYAGYTVPPYYD 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,547,479
Number of Sequences: 62578
Number of extensions: 841103
Number of successful extensions: 2005
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1852
Number of HSP's gapped (non-prelim): 45
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)