Query 004970
Match_columns 721
No_of_seqs 332 out of 2796
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0021 TktA Transketolase [Ca 100.0 4E-135 9E-140 1113.9 66.3 634 85-721 3-662 (663)
2 PRK12754 transketolase; Review 100.0 7E-125 2E-129 1084.1 66.7 627 89-721 5-663 (663)
3 PRK12753 transketolase; Review 100.0 4E-123 9E-128 1076.6 66.0 626 89-721 5-663 (663)
4 PLN02790 transketolase 100.0 1E-120 3E-125 1057.1 68.4 625 95-721 1-654 (654)
5 TIGR00232 tktlase_bact transke 100.0 5E-120 1E-124 1051.6 69.1 625 90-721 2-653 (653)
6 PTZ00089 transketolase; Provis 100.0 1E-119 2E-124 1050.5 69.8 626 86-721 4-658 (661)
7 KOG0523 Transketolase [Carbohy 100.0 2E-113 3E-118 932.3 45.9 586 84-721 6-625 (632)
8 PRK05899 transketolase; Review 100.0 6E-106 1E-110 936.0 67.4 594 84-721 4-624 (624)
9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2E-100 5E-105 835.2 47.5 536 71-721 6-622 (627)
10 PLN02582 1-deoxy-D-xylulose-5- 100.0 8.1E-98 2E-102 857.3 54.0 537 70-721 34-666 (677)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.6E-97 3E-102 858.6 53.6 535 72-721 3-616 (617)
12 PRK13012 2-oxoacid dehydrogena 100.0 2E-95 4E-100 849.2 61.0 615 81-721 82-866 (896)
13 PRK12571 1-deoxy-D-xylulose-5- 100.0 4E-95 9E-100 841.0 54.5 537 70-721 9-627 (641)
14 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.8E-95 6E-100 839.4 53.0 534 71-721 8-580 (580)
15 PLN02225 1-deoxy-D-xylulose-5- 100.0 6.3E-95 1.4E-99 825.7 51.8 519 70-721 79-690 (701)
16 PLN02234 1-deoxy-D-xylulose-5- 100.0 9.1E-95 2E-99 824.9 51.9 499 71-681 68-614 (641)
17 PRK12315 1-deoxy-D-xylulose-5- 100.0 2.9E-94 6.3E-99 827.2 53.4 532 72-721 5-580 (581)
18 TIGR03186 AKGDH_not_PDH alpha- 100.0 3E-93 6.5E-98 827.2 61.8 598 82-721 69-858 (889)
19 PRK09405 aceE pyruvate dehydro 100.0 9.5E-89 2.1E-93 789.8 60.9 605 82-721 75-861 (891)
20 TIGR00759 aceE pyruvate dehydr 100.0 1.6E-72 3.4E-77 645.6 60.4 605 82-721 69-855 (885)
21 PF00456 Transketolase_N: Tran 100.0 4.3E-68 9.4E-73 567.6 26.6 305 89-394 2-332 (332)
22 COG3958 Transketolase, C-termi 100.0 5.6E-65 1.2E-69 513.5 28.7 295 410-721 6-312 (312)
23 PRK05261 putative phosphoketol 100.0 8.5E-61 1.8E-65 550.5 48.5 570 103-719 44-739 (785)
24 COG2609 AceE Pyruvate dehydrog 100.0 2.6E-53 5.6E-58 464.7 47.8 612 82-721 72-857 (887)
25 COG3959 Transketolase, N-termi 100.0 5.1E-52 1.1E-56 404.4 22.8 212 83-307 6-243 (243)
26 CHL00144 odpB pyruvate dehydro 100.0 8.8E-51 1.9E-55 436.2 29.6 290 411-721 4-323 (327)
27 PLN02683 pyruvate dehydrogenas 100.0 4.3E-50 9.3E-55 434.8 31.4 303 402-721 18-350 (356)
28 PRK11892 pyruvate dehydrogenas 100.0 5.9E-50 1.3E-54 445.1 31.0 290 410-721 141-462 (464)
29 PRK09212 pyruvate dehydrogenas 100.0 1E-49 2.2E-54 428.7 28.8 294 410-721 3-323 (327)
30 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.1E-49 2.4E-54 425.7 29.0 246 86-340 2-354 (386)
31 PTZ00182 3-methyl-2-oxobutanat 100.0 4.3E-48 9.4E-53 419.0 28.8 294 410-721 34-355 (355)
32 cd02012 TPP_TK Thiamine pyroph 100.0 1.1E-45 2.5E-50 385.6 25.7 228 93-332 1-254 (255)
33 COG0022 AcoB Pyruvate/2-oxoglu 100.0 6E-44 1.3E-48 363.5 26.3 293 411-721 2-322 (324)
34 PRK09404 sucA 2-oxoglutarate d 100.0 1.9E-40 4.2E-45 390.6 42.1 479 171-681 313-878 (924)
35 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 4.6E-39 9.9E-44 377.0 45.0 470 170-676 313-879 (929)
36 PF13292 DXP_synthase_N: 1-deo 100.0 2.9E-39 6.4E-44 326.5 15.4 206 72-304 3-270 (270)
37 cd02007 TPP_DXS Thiamine pyrop 100.0 2.6E-37 5.6E-42 309.3 19.1 176 108-310 1-195 (195)
38 KOG0524 Pyruvate dehydrogenase 100.0 7.2E-37 1.6E-41 303.3 20.4 294 409-721 33-358 (359)
39 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.1E-35 4.6E-40 285.6 16.9 154 416-578 2-156 (156)
40 PF02779 Transket_pyr: Transke 100.0 9.5E-33 2.1E-37 273.0 13.1 168 410-582 2-176 (178)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 9.8E-32 2.1E-36 261.7 15.5 155 416-578 2-167 (167)
42 COG3957 Phosphoketolase [Carbo 100.0 6.8E-29 1.5E-33 274.8 30.2 489 105-648 57-667 (793)
43 smart00861 Transket_pyr Transk 100.0 8.6E-30 1.9E-34 249.6 18.1 163 412-579 1-167 (168)
44 KOG0525 Branched chain alpha-k 100.0 1.6E-29 3.5E-34 247.3 13.9 292 408-720 38-359 (362)
45 COG1071 AcoA Pyruvate/2-oxoglu 99.9 6.9E-22 1.5E-26 210.4 28.2 227 82-333 24-285 (358)
46 PLN02374 pyruvate dehydrogenas 99.9 3.3E-21 7.2E-26 213.0 33.3 153 169-333 191-348 (433)
47 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 1.5E-21 3.2E-26 208.1 27.9 179 166-373 98-281 (293)
48 CHL00149 odpA pyruvate dehydro 99.9 7.8E-21 1.7E-25 205.6 30.0 182 169-374 125-312 (341)
49 cd02011 TPP_PK Thiamine pyroph 99.9 4.9E-22 1.1E-26 200.2 14.9 132 166-313 56-211 (227)
50 PF00676 E1_dh: Dehydrogenase 99.9 1.3E-20 2.7E-25 201.0 26.1 178 169-374 98-280 (300)
51 PLN02269 Pyruvate dehydrogenas 99.9 8.1E-20 1.8E-24 198.3 29.1 148 167-333 133-283 (362)
52 TIGR03181 PDH_E1_alph_x pyruva 99.9 9.5E-20 2.1E-24 197.6 29.6 151 166-333 116-270 (341)
53 TIGR03182 PDH_E1_alph_y pyruva 99.9 1.1E-19 2.4E-24 195.1 28.3 149 167-333 105-257 (315)
54 cd00568 TPP_enzymes Thiamine p 99.8 4.8E-19 1E-23 172.9 14.0 144 140-304 12-168 (168)
55 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 1.8E-18 3.8E-23 170.2 16.2 144 140-304 14-171 (172)
56 cd02003 TPP_IolD Thiamine pyro 99.8 3.9E-18 8.5E-23 172.5 15.4 148 140-308 14-187 (205)
57 cd02008 TPP_IOR_alpha Thiamine 99.8 2.7E-18 5.8E-23 169.9 13.3 141 140-304 25-176 (178)
58 cd02013 TPP_Xsc_like Thiamine 99.8 5.5E-18 1.2E-22 170.3 15.3 164 114-307 3-181 (196)
59 KOG0225 Pyruvate dehydrogenase 99.8 7.3E-18 1.6E-22 173.2 14.3 151 170-343 163-317 (394)
60 cd02016 TPP_E1_OGDC_like Thiam 99.8 5.1E-18 1.1E-22 175.5 12.9 139 169-314 110-255 (265)
61 cd02015 TPP_AHAS Thiamine pyro 99.8 1.6E-17 3.5E-22 165.6 15.7 146 140-306 16-175 (186)
62 cd02006 TPP_Gcl Thiamine pyrop 99.7 1.5E-17 3.2E-22 168.0 15.3 164 114-307 7-196 (202)
63 cd03371 TPP_PpyrDC Thiamine py 99.7 2.4E-17 5.1E-22 164.4 15.9 149 140-309 14-167 (188)
64 PRK06163 hypothetical protein; 99.7 7.3E-17 1.6E-21 162.2 18.4 163 112-308 10-176 (202)
65 cd02002 TPP_BFDC Thiamine pyro 99.7 2.5E-17 5.5E-22 162.8 14.3 144 140-304 16-178 (178)
66 cd02001 TPP_ComE_PpyrDC Thiami 99.7 3.1E-17 6.8E-22 158.8 13.8 142 140-306 13-156 (157)
67 cd02010 TPP_ALS Thiamine pyrop 99.7 8.1E-17 1.8E-21 159.1 16.0 146 140-306 14-171 (177)
68 cd02005 TPP_PDC_IPDC Thiamine 99.7 7.6E-17 1.6E-21 160.2 15.3 161 115-306 2-175 (183)
69 KOG1182 Branched chain alpha-k 99.7 2E-17 4.3E-22 168.1 8.4 158 147-320 172-333 (432)
70 cd02014 TPP_POX Thiamine pyrop 99.7 2.5E-16 5.4E-21 155.9 15.6 160 116-306 3-174 (178)
71 TIGR03846 sulfopy_beta sulfopy 99.7 6.1E-16 1.3E-20 153.3 16.3 142 140-307 13-158 (181)
72 cd02009 TPP_SHCHC_synthase Thi 99.7 4.1E-16 8.8E-21 153.9 14.3 143 140-304 16-174 (175)
73 cd03372 TPP_ComE Thiamine pyro 99.7 1.3E-15 2.8E-20 150.8 15.7 144 140-309 13-159 (179)
74 COG0028 IlvB Thiamine pyrophos 99.6 2.2E-15 4.8E-20 172.8 17.8 160 116-307 360-533 (550)
75 TIGR03297 Ppyr-DeCO2ase phosph 99.6 2.7E-15 5.8E-20 163.4 16.5 164 115-309 172-340 (361)
76 PF09364 XFP_N: XFP N-terminal 99.6 1.3E-15 2.9E-20 160.1 13.3 196 106-325 45-307 (379)
77 cd03375 TPP_OGFOR Thiamine pyr 99.6 2.5E-15 5.3E-20 150.6 14.3 137 141-305 27-184 (193)
78 PRK07586 hypothetical protein; 99.6 2E-15 4.4E-20 173.5 15.5 161 113-304 335-514 (514)
79 PRK12474 hypothetical protein; 99.6 3.1E-15 6.8E-20 172.0 16.5 161 113-304 339-518 (518)
80 PF02775 TPP_enzyme_C: Thiamin 99.6 6E-16 1.3E-20 149.3 8.4 114 170-302 26-153 (153)
81 PF02780 Transketolase_C: Tran 99.6 2.1E-16 4.6E-21 147.0 4.0 110 595-713 1-124 (124)
82 PRK06154 hypothetical protein; 99.6 5.2E-15 1.1E-19 171.6 16.5 164 114-307 380-557 (565)
83 TIGR01504 glyox_carbo_lig glyo 99.6 5.3E-15 1.1E-19 172.4 15.4 163 114-306 368-556 (588)
84 TIGR02418 acolac_catab acetola 99.6 8.9E-15 1.9E-19 169.1 16.8 163 114-307 358-532 (539)
85 PRK08322 acetolactate synthase 99.6 3.6E-14 7.9E-19 164.4 20.5 162 114-306 356-529 (547)
86 PRK09124 pyruvate dehydrogenas 99.6 1.2E-14 2.5E-19 169.4 16.5 162 114-306 358-531 (574)
87 PRK08979 acetolactate synthase 99.6 9.3E-15 2E-19 170.0 14.8 163 114-306 371-547 (572)
88 PRK07979 acetolactate synthase 99.6 1.1E-14 2.4E-19 169.5 15.0 163 114-306 371-549 (574)
89 PRK07092 benzoylformate decarb 99.6 1.2E-14 2.7E-19 167.6 15.2 161 113-304 357-529 (530)
90 TIGR03393 indolpyr_decarb indo 99.6 1E-14 2.3E-19 168.5 14.5 160 114-305 355-527 (539)
91 PRK05858 hypothetical protein; 99.6 1.8E-14 3.9E-19 166.7 16.2 163 114-307 357-532 (542)
92 PRK06546 pyruvate dehydrogenas 99.6 7E-14 1.5E-18 162.8 21.1 163 114-307 358-532 (578)
93 PRK08978 acetolactate synthase 99.6 2.2E-14 4.8E-19 166.2 16.8 164 112-306 349-526 (548)
94 PRK08611 pyruvate oxidase; Pro 99.6 1.4E-14 3E-19 168.6 15.1 163 114-307 358-532 (576)
95 PRK06456 acetolactate synthase 99.6 1.3E-14 2.8E-19 168.9 14.8 162 114-306 371-546 (572)
96 PRK11269 glyoxylate carboligas 99.6 1.5E-14 3.4E-19 168.8 15.2 163 114-306 369-557 (591)
97 PRK06965 acetolactate synthase 99.6 1.5E-14 3.3E-19 168.7 15.0 163 114-306 387-563 (587)
98 PRK08273 thiamine pyrophosphat 99.6 3.4E-14 7.3E-19 166.1 17.8 162 114-306 365-547 (597)
99 PRK09107 acetolactate synthase 99.6 1.9E-14 4E-19 168.0 15.2 162 114-306 379-555 (595)
100 PRK06112 acetolactate synthase 99.6 9E-14 2E-18 162.1 20.6 162 114-307 386-562 (578)
101 PRK08199 thiamine pyrophosphat 99.6 2.1E-14 4.6E-19 166.6 15.2 162 114-306 366-539 (557)
102 PRK06457 pyruvate dehydrogenas 99.6 2.2E-14 4.8E-19 166.2 15.2 163 114-306 346-520 (549)
103 PRK06466 acetolactate synthase 99.6 2.4E-14 5.1E-19 166.8 15.5 164 113-306 372-549 (574)
104 TIGR03457 sulphoacet_xsc sulfo 99.6 2.3E-14 4.9E-19 167.1 15.2 165 114-308 380-560 (579)
105 PRK08527 acetolactate synthase 99.6 3.8E-14 8.2E-19 164.7 17.0 162 114-306 364-539 (563)
106 PRK08266 hypothetical protein; 99.6 2.2E-14 4.8E-19 166.0 14.9 148 140-308 368-528 (542)
107 PRK07418 acetolactate synthase 99.6 2.9E-14 6.3E-19 167.2 15.8 161 113-306 385-560 (616)
108 PRK07524 hypothetical protein; 99.6 2.2E-14 4.8E-19 165.7 14.2 149 140-309 372-533 (535)
109 TIGR02720 pyruv_oxi_spxB pyruv 99.6 4.2E-14 9E-19 164.6 16.5 163 113-306 357-533 (575)
110 PRK07064 hypothetical protein; 99.6 3.3E-14 7.1E-19 164.7 15.6 145 140-305 371-528 (544)
111 PLN02573 pyruvate decarboxylas 99.6 3E-14 6.6E-19 165.6 15.3 161 114-305 379-552 (578)
112 cd03376 TPP_PFOR_porB_like Thi 99.6 3.1E-14 6.7E-19 146.8 13.6 147 141-305 27-200 (235)
113 PRK08617 acetolactate synthase 99.6 3.2E-14 7E-19 165.0 15.2 163 114-307 364-538 (552)
114 PLN02470 acetolactate synthase 99.6 3.2E-14 6.9E-19 166.0 14.9 162 114-306 376-558 (585)
115 PRK12270 kgd alpha-ketoglutara 99.5 2.6E-11 5.7E-16 140.4 37.6 475 171-676 618-1176(1228)
116 PRK06725 acetolactate synthase 99.5 4.9E-14 1.1E-18 163.7 15.8 162 114-306 372-546 (570)
117 PRK07710 acetolactate synthase 99.5 4E-14 8.8E-19 164.7 15.1 162 114-306 374-549 (571)
118 PRK06048 acetolactate synthase 99.5 7.3E-14 1.6E-18 162.2 16.8 160 114-306 365-539 (561)
119 PRK07525 sulfoacetaldehyde ace 99.5 5.3E-14 1.2E-18 164.2 15.1 164 114-308 385-565 (588)
120 PRK08155 acetolactate synthase 99.5 8.1E-14 1.8E-18 162.0 15.9 162 114-306 369-544 (564)
121 CHL00099 ilvB acetohydroxyacid 99.5 7.4E-14 1.6E-18 162.9 15.3 161 114-306 382-556 (585)
122 PRK07789 acetolactate synthase 99.5 5.9E-14 1.3E-18 164.6 14.3 164 113-306 396-577 (612)
123 PRK07282 acetolactate synthase 99.5 6.5E-14 1.4E-18 162.7 14.6 161 114-306 368-542 (566)
124 PRK06276 acetolactate synthase 99.5 1.1E-13 2.3E-18 161.6 15.7 167 114-306 364-544 (586)
125 PRK06882 acetolactate synthase 99.5 1.4E-13 3E-18 160.4 16.5 163 114-306 371-547 (574)
126 TIGR00118 acolac_lg acetolacta 99.5 1.1E-13 2.4E-18 160.7 15.5 162 114-306 362-537 (558)
127 TIGR03254 oxalate_oxc oxalyl-C 99.5 3.4E-13 7.4E-18 156.5 18.2 164 113-307 364-540 (554)
128 TIGR03394 indol_phenyl_DC indo 99.5 1.7E-13 3.8E-18 158.0 14.8 159 114-306 355-522 (535)
129 PRK07449 2-succinyl-5-enolpyru 99.5 1.7E-13 3.8E-18 159.4 14.7 159 114-306 375-550 (568)
130 PRK09259 putative oxalyl-CoA d 99.5 4.9E-13 1.1E-17 155.6 18.3 162 114-307 372-548 (569)
131 COG3961 Pyruvate decarboxylase 99.5 9.5E-14 2.1E-18 151.5 11.2 198 82-306 322-536 (557)
132 PRK11869 2-oxoacid ferredoxin 99.5 4.9E-13 1.1E-17 140.3 13.6 141 140-305 34-193 (280)
133 cd02018 TPP_PFOR Thiamine pyro 99.4 2.3E-13 5E-18 140.5 9.8 150 141-305 28-203 (237)
134 PRK11866 2-oxoacid ferredoxin 99.4 1.1E-12 2.3E-17 137.8 14.0 118 170-305 57-192 (279)
135 PRK05778 2-oxoglutarate ferred 99.4 1.2E-12 2.5E-17 139.1 14.3 139 140-305 44-203 (301)
136 PRK08327 acetolactate synthase 99.4 8.4E-13 1.8E-17 153.5 13.3 118 170-305 428-567 (569)
137 PRK09628 oorB 2-oxoglutarate-a 99.4 9.4E-13 2E-17 138.3 12.1 116 171-306 67-202 (277)
138 PRK11867 2-oxoglutarate ferred 99.4 1.4E-12 3.1E-17 137.8 12.4 138 141-305 45-202 (286)
139 TIGR02177 PorB_KorB 2-oxoacid: 99.4 1.4E-12 3E-17 137.3 12.0 115 172-305 53-186 (287)
140 TIGR03336 IOR_alpha indolepyru 99.3 4.7E-11 1E-15 139.4 20.6 231 463-719 50-334 (595)
141 TIGR03336 IOR_alpha indolepyru 99.3 6.1E-12 1.3E-16 146.8 12.5 140 141-304 378-529 (595)
142 PRK07119 2-ketoisovalerate fer 99.3 1.6E-10 3.5E-15 126.1 20.2 204 457-672 47-307 (352)
143 KOG1185 Thiamine pyrophosphate 99.2 4.4E-10 9.5E-15 121.7 19.1 147 140-306 395-561 (571)
144 cd06586 TPP_enzyme_PYR Pyrimid 99.2 2.3E-10 5E-15 109.9 12.5 119 456-578 32-154 (154)
145 PRK08659 2-oxoglutarate ferred 99.2 2E-09 4.4E-14 118.4 20.3 202 459-672 49-334 (376)
146 COG3962 Acetolactate synthase 99.1 3.9E-10 8.4E-15 121.3 13.7 163 112-306 392-576 (617)
147 PLN02980 2-oxoglutarate decarb 99.1 1.4E-10 3.1E-15 148.7 12.0 115 170-306 757-890 (1655)
148 KOG4166 Thiamine pyrophosphate 99.1 6.4E-10 1.4E-14 118.2 12.7 191 88-309 437-651 (675)
149 KOG1184 Thiamine pyrophosphate 99.1 1.9E-10 4.1E-15 125.5 8.9 203 77-305 320-539 (561)
150 PRK11864 2-ketoisovalerate fer 99.1 9.4E-10 2E-14 116.3 12.7 127 166-305 63-207 (300)
151 PRK09627 oorA 2-oxoglutarate-a 99.0 1.2E-08 2.6E-13 112.1 19.4 196 467-673 55-336 (375)
152 KOG0451 Predicted 2-oxoglutara 99.0 1.1E-07 2.5E-12 103.9 26.1 477 171-676 282-864 (913)
153 PRK09622 porA pyruvate flavodo 99.0 1.4E-08 3.1E-13 113.0 19.8 204 467-679 64-336 (407)
154 PF03894 XFP: D-xylulose 5-pho 98.9 4.3E-08 9.3E-13 94.3 14.9 150 415-566 2-178 (179)
155 PRK11865 pyruvate ferredoxin o 98.8 8.8E-08 1.9E-12 101.5 13.3 148 143-305 40-211 (299)
156 PRK08367 porA pyruvate ferredo 98.7 1.1E-06 2.4E-11 97.4 22.5 203 466-677 57-327 (394)
157 PRK08366 vorA 2-ketoisovalerat 98.7 6.8E-07 1.5E-11 98.8 19.5 202 466-676 56-324 (390)
158 TIGR03710 OAFO_sf 2-oxoacid:ac 98.7 6.4E-07 1.4E-11 104.0 19.2 212 460-681 238-533 (562)
159 COG0567 SucA 2-oxoglutarate de 98.5 2.8E-05 6.1E-10 91.5 25.0 451 170-652 296-830 (906)
160 COG3960 Glyoxylate carboligase 98.4 2.3E-07 5E-12 96.4 4.4 117 170-306 417-557 (592)
161 KOG0450 2-oxoglutarate dehydro 98.3 0.00072 1.6E-08 76.7 29.4 469 178-681 380-965 (1017)
162 TIGR02176 pyruv_ox_red pyruvat 98.1 9.8E-05 2.1E-09 92.2 19.8 208 461-676 54-330 (1165)
163 COG4231 Indolepyruvate ferredo 97.8 0.00043 9.4E-09 78.8 15.7 201 459-674 58-307 (640)
164 COG4231 Indolepyruvate ferredo 97.7 0.00011 2.3E-09 83.5 9.1 116 170-304 426-553 (640)
165 COG1013 PorB Pyruvate:ferredox 97.7 0.00037 8.1E-09 74.2 12.2 116 171-305 69-204 (294)
166 COG1165 MenD 2-succinyl-6-hydr 97.6 0.0012 2.6E-08 74.3 15.2 183 84-306 346-547 (566)
167 COG0674 PorA Pyruvate:ferredox 97.5 0.0096 2.1E-07 65.7 19.9 180 466-652 54-302 (365)
168 TIGR03297 Ppyr-DeCO2ase phosph 97.1 0.25 5.5E-06 54.4 26.5 113 172-303 33-151 (361)
169 PF01855 POR_N: Pyruvate flavo 96.9 0.0035 7.6E-08 64.7 8.9 110 464-577 41-153 (230)
170 PRK09193 indolepyruvate ferred 96.8 0.0042 9.2E-08 76.7 9.9 118 169-303 478-615 (1165)
171 PRK13030 2-oxoacid ferredoxin 96.7 0.006 1.3E-07 75.6 10.3 117 170-303 466-601 (1159)
172 cd07035 TPP_PYR_POX_like Pyrim 96.6 0.017 3.8E-07 55.4 10.8 116 459-578 35-155 (155)
173 cd07034 TPP_PYR_PFOR_IOR-alpha 96.6 0.025 5.3E-07 54.7 11.7 114 458-577 41-159 (160)
174 cd03377 TPP_PFOR_PNO Thiamine 96.5 0.015 3.3E-07 63.2 10.5 99 204-305 151-267 (365)
175 PRK13029 2-oxoacid ferredoxin 96.4 0.016 3.5E-07 71.7 10.7 117 170-303 493-629 (1186)
176 PF02776 TPP_enzyme_N: Thiamin 96.4 0.025 5.5E-07 55.5 10.3 117 459-579 40-162 (172)
177 PRK13030 2-oxoacid ferredoxin 95.8 0.13 2.8E-06 64.2 14.9 202 460-674 75-342 (1159)
178 TIGR02176 pyruv_ox_red pyruvat 95.5 0.046 1E-06 68.8 9.6 97 205-305 952-1067(1165)
179 TIGR03845 sulfopyru_alph sulfo 95.5 0.085 1.8E-06 51.2 9.4 110 465-579 40-155 (157)
180 PRK09193 indolepyruvate ferred 95.3 0.3 6.5E-06 61.0 15.4 197 460-674 83-350 (1165)
181 cd07037 TPP_PYR_MenD Pyrimidin 95.3 0.12 2.6E-06 50.4 9.7 115 459-577 36-161 (162)
182 cd07039 TPP_PYR_POX Pyrimidine 94.7 0.41 8.9E-06 46.7 11.8 115 460-579 40-159 (164)
183 TIGR02418 acolac_catab acetola 94.3 0.27 5.9E-06 57.2 11.2 115 459-579 37-158 (539)
184 PRK07092 benzoylformate decarb 94.1 0.3 6.5E-06 56.8 10.9 117 459-579 49-171 (530)
185 cd07033 TPP_PYR_DXS_TK_like Py 93.9 0.41 8.9E-06 46.3 9.9 86 206-302 65-154 (156)
186 cd02018 TPP_PFOR Thiamine pyro 93.7 2.8 6.1E-05 43.5 16.2 119 457-577 51-201 (237)
187 cd01460 vWA_midasin VWA_Midasi 93.5 0.64 1.4E-05 49.0 11.1 84 206-292 166-257 (266)
188 PRK13029 2-oxoacid ferredoxin 93.3 1.2 2.6E-05 55.8 14.5 197 460-674 86-353 (1186)
189 PRK07586 hypothetical protein; 93.0 1.1 2.5E-05 51.7 13.4 170 459-636 40-228 (514)
190 PF09363 XFP_C: XFP C-terminal 92.6 1.1 2.4E-05 44.9 10.6 111 607-719 34-160 (203)
191 PRK05858 hypothetical protein; 92.5 0.96 2.1E-05 52.8 11.9 117 458-579 42-164 (542)
192 PRK07064 hypothetical protein; 92.3 1 2.3E-05 52.4 11.9 117 459-579 42-166 (544)
193 PRK06466 acetolactate synthase 92.3 0.91 2E-05 53.4 11.3 116 459-579 43-164 (574)
194 PRK08199 thiamine pyrophosphat 91.9 1.1 2.4E-05 52.5 11.3 116 459-579 47-168 (557)
195 PRK08322 acetolactate synthase 91.7 1.2 2.5E-05 52.1 11.3 115 459-579 39-160 (547)
196 PRK08266 hypothetical protein; 91.6 1.2 2.6E-05 52.0 11.2 117 459-579 44-168 (542)
197 TIGR00118 acolac_lg acetolacta 91.6 1.3 2.8E-05 51.9 11.5 116 459-579 40-161 (558)
198 cd07036 TPP_PYR_E1-PDHc-beta_l 91.5 1.6 3.6E-05 42.7 10.4 99 177-301 56-164 (167)
199 cd03376 TPP_PFOR_porB_like Thi 91.5 8 0.00017 40.1 16.0 89 486-576 81-197 (235)
200 cd02014 TPP_POX Thiamine pyrop 91.5 8.8 0.00019 37.7 15.7 117 456-576 39-170 (178)
201 PRK06112 acetolactate synthase 91.4 1.3 2.9E-05 52.0 11.5 116 459-579 50-171 (578)
202 cd02004 TPP_BZL_OCoD_HPCL Thia 91.4 3.3 7.2E-05 40.4 12.5 117 456-576 36-169 (172)
203 PRK07524 hypothetical protein; 91.3 1.6 3.4E-05 50.9 11.9 117 459-579 40-164 (535)
204 cd07038 TPP_PYR_PDC_IPDC_like 91.2 2.5 5.4E-05 41.1 11.3 116 459-578 36-162 (162)
205 PRK08155 acetolactate synthase 91.2 1.1 2.4E-05 52.5 10.5 116 459-579 52-173 (564)
206 PRK06456 acetolactate synthase 91.1 1.5 3.2E-05 51.5 11.4 114 460-579 45-165 (572)
207 PRK08617 acetolactate synthase 91.0 1.4 3E-05 51.5 11.0 115 459-579 43-164 (552)
208 TIGR01504 glyox_carbo_lig glyo 90.8 2.1 4.6E-05 50.5 12.4 116 459-579 42-164 (588)
209 PRK11269 glyoxylate carboligas 90.8 1.8 3.8E-05 51.2 11.7 115 459-579 43-165 (591)
210 cd02010 TPP_ALS Thiamine pyrop 90.7 12 0.00026 36.8 15.8 118 456-577 36-168 (177)
211 PRK07979 acetolactate synthase 90.6 1.8 3.8E-05 51.0 11.4 115 459-579 43-164 (574)
212 PRK08978 acetolactate synthase 90.6 1.5 3.2E-05 51.3 10.7 115 459-579 39-160 (548)
213 cd02001 TPP_ComE_PpyrDC Thiami 90.6 6.2 0.00014 38.1 13.3 115 456-576 33-152 (157)
214 PRK06457 pyruvate dehydrogenas 90.3 1.8 3.9E-05 50.6 11.1 116 459-579 40-160 (549)
215 cd02009 TPP_SHCHC_synthase Thi 90.3 5.4 0.00012 39.2 12.9 115 457-576 40-172 (175)
216 TIGR02177 PorB_KorB 2-oxoacid: 90.3 7.5 0.00016 41.5 14.7 149 412-578 11-185 (287)
217 PRK07525 sulfoacetaldehyde ace 90.2 2.1 4.5E-05 50.6 11.5 115 459-579 44-164 (588)
218 PRK07710 acetolactate synthase 90.1 1.7 3.7E-05 51.1 10.7 116 458-579 53-175 (571)
219 PRK06276 acetolactate synthase 90.0 2.1 4.6E-05 50.5 11.4 115 460-579 40-160 (586)
220 PRK11866 2-oxoacid ferredoxin 89.7 7.8 0.00017 41.3 14.2 106 469-577 62-190 (279)
221 PRK07789 acetolactate synthase 89.6 2.5 5.4E-05 50.1 11.6 116 459-579 70-191 (612)
222 PRK08611 pyruvate oxidase; Pro 89.4 2.5 5.4E-05 49.8 11.4 116 459-579 44-164 (576)
223 PRK09107 acetolactate synthase 89.2 2.5 5.3E-05 50.0 11.2 115 459-579 50-171 (595)
224 PRK07282 acetolactate synthase 89.0 2.8 6E-05 49.3 11.3 116 459-579 49-170 (566)
225 PRK08527 acetolactate synthase 88.9 3 6.5E-05 48.9 11.5 115 459-579 42-163 (563)
226 cd06586 TPP_enzyme_PYR Pyrimid 88.8 3.8 8.3E-05 38.8 10.3 85 212-302 68-152 (154)
227 PRK06882 acetolactate synthase 88.7 3.2 6.9E-05 48.8 11.7 116 459-579 43-164 (574)
228 PRK06965 acetolactate synthase 88.7 2.9 6.3E-05 49.3 11.3 115 459-579 60-181 (587)
229 PRK11864 2-ketoisovalerate fer 88.6 11 0.00023 40.6 14.3 92 486-578 93-206 (300)
230 PRK07449 2-succinyl-5-enolpyru 88.6 1.4 3E-05 51.7 8.5 117 459-579 48-174 (568)
231 TIGR03254 oxalate_oxc oxalyl-C 88.6 3.1 6.7E-05 48.7 11.4 117 459-579 41-164 (554)
232 PRK09124 pyruvate dehydrogenas 88.5 3 6.6E-05 49.0 11.3 113 460-579 43-162 (574)
233 TIGR03845 sulfopyru_alph sulfo 88.5 6.1 0.00013 38.3 11.5 109 171-303 40-153 (157)
234 PRK09259 putative oxalyl-CoA d 88.4 3.2 7E-05 48.7 11.4 117 459-579 48-171 (569)
235 TIGR03457 sulphoacet_xsc sulfo 88.3 3.8 8.3E-05 48.2 11.9 117 459-580 40-161 (579)
236 PLN02470 acetolactate synthase 88.0 3.5 7.6E-05 48.6 11.4 115 459-579 52-173 (585)
237 PRK07418 acetolactate synthase 88.0 3.9 8.5E-05 48.5 11.8 115 459-579 61-182 (616)
238 PRK06725 acetolactate synthase 87.7 4 8.7E-05 48.0 11.5 116 459-579 53-174 (570)
239 COG4032 Predicted thiamine-pyr 87.3 1.2 2.7E-05 41.7 5.5 106 467-577 50-162 (172)
240 PRK06048 acetolactate synthase 87.2 3.9 8.4E-05 48.0 11.0 115 459-579 46-167 (561)
241 TIGR02720 pyruv_oxi_spxB pyruv 87.2 4.8 0.0001 47.4 11.8 115 459-579 39-159 (575)
242 TIGR00173 menD 2-succinyl-5-en 87.1 2.5 5.5E-05 47.8 9.2 115 460-579 40-166 (432)
243 PF02776 TPP_enzyme_N: Thiamin 87.0 25 0.00055 34.2 15.1 141 141-303 16-160 (172)
244 PRK08979 acetolactate synthase 86.8 4.4 9.5E-05 47.7 11.2 115 459-579 43-164 (572)
245 PRK08327 acetolactate synthase 86.6 4.2 9.1E-05 47.8 10.9 116 460-579 52-181 (569)
246 PRK06546 pyruvate dehydrogenas 86.5 4.3 9.4E-05 47.8 11.0 115 459-579 42-162 (578)
247 PRK11867 2-oxoglutarate ferred 86.3 24 0.00052 37.7 15.5 104 471-577 74-200 (286)
248 PRK12474 hypothetical protein; 86.1 5.8 0.00013 46.0 11.6 115 459-579 44-165 (518)
249 PRK11865 pyruvate ferredoxin o 86.0 9.3 0.0002 41.1 12.1 106 469-577 72-209 (299)
250 cd02008 TPP_IOR_alpha Thiamine 85.9 15 0.00033 36.1 13.0 100 474-576 59-174 (178)
251 CHL00099 ilvB acetohydroxyacid 85.9 2.8 6.1E-05 49.4 9.1 115 459-579 52-173 (585)
252 PF02779 Transket_pyr: Transke 85.8 11 0.00023 37.2 11.8 105 177-303 60-171 (178)
253 PLN02683 pyruvate dehydrogenas 85.7 6.1 0.00013 43.6 10.9 99 177-302 86-195 (356)
254 cd02015 TPP_AHAS Thiamine pyro 85.4 16 0.00036 36.0 13.0 117 456-576 38-171 (186)
255 cd02003 TPP_IolD Thiamine pyro 84.9 12 0.00025 37.9 11.8 115 456-576 36-181 (205)
256 cd02013 TPP_Xsc_like Thiamine 84.1 9.1 0.0002 38.3 10.5 118 456-576 41-176 (196)
257 cd00568 TPP_enzymes Thiamine p 83.9 7.3 0.00016 37.4 9.5 100 472-576 52-166 (168)
258 cd03375 TPP_OGFOR Thiamine pyr 83.6 15 0.00032 36.8 11.8 102 473-577 58-182 (193)
259 PRK08273 thiamine pyrophosphat 83.5 5.7 0.00012 47.0 10.2 115 459-579 43-164 (597)
260 PF02775 TPP_enzyme_C: Thiamin 83.4 18 0.0004 34.3 12.0 116 456-575 16-152 (153)
261 cd02006 TPP_Gcl Thiamine pyrop 83.0 11 0.00024 37.8 10.7 118 456-576 45-191 (202)
262 PLN02573 pyruvate decarboxylas 83.0 7.2 0.00016 46.0 10.6 115 460-579 56-182 (578)
263 cd07035 TPP_PYR_POX_like Pyrim 82.0 22 0.00047 33.8 11.9 136 142-302 13-153 (155)
264 TIGR00204 dxs 1-deoxy-D-xylulo 81.4 9.4 0.0002 45.4 10.8 109 170-303 356-468 (617)
265 smart00861 Transket_pyr Transk 81.2 9.7 0.00021 36.9 9.3 87 206-302 75-164 (168)
266 PRK05899 transketolase; Review 81.2 12 0.00025 44.7 11.6 84 211-302 397-483 (624)
267 cd02012 TPP_TK Thiamine pyroph 81.1 16 0.00034 38.3 11.4 102 472-576 111-224 (255)
268 PRK11892 pyruvate dehydrogenas 80.9 9.9 0.00021 43.5 10.4 63 230-301 246-309 (464)
269 PLN02980 2-oxoglutarate decarb 80.6 5.6 0.00012 52.7 9.4 116 459-578 340-466 (1655)
270 PRK12571 1-deoxy-D-xylulose-5- 80.4 11 0.00025 44.9 11.1 88 206-303 387-477 (641)
271 PRK08659 2-oxoglutarate ferred 79.9 12 0.00026 41.7 10.4 109 177-307 60-174 (376)
272 COG1071 AcoA Pyruvate/2-oxoglu 79.8 11 0.00024 41.4 9.8 104 469-576 143-258 (358)
273 PRK05778 2-oxoglutarate ferred 79.8 13 0.00029 39.9 10.4 102 472-576 76-200 (301)
274 cd03371 TPP_PpyrDC Thiamine py 79.7 54 0.0012 32.6 14.2 114 457-576 40-160 (188)
275 PRK09212 pyruvate dehydrogenas 78.3 13 0.00028 40.5 9.9 60 235-302 112-172 (327)
276 PRK12315 1-deoxy-D-xylulose-5- 78.0 14 0.00031 43.5 10.9 111 461-576 109-240 (581)
277 PRK05444 1-deoxy-D-xylulose-5- 78.0 15 0.00033 43.3 11.1 100 178-302 334-436 (580)
278 PRK11869 2-oxoacid ferredoxin 77.5 15 0.00031 39.2 9.7 104 471-577 65-191 (280)
279 TIGR03394 indol_phenyl_DC indo 76.3 11 0.00023 44.1 9.1 117 459-579 39-165 (535)
280 TIGR00232 tktlase_bact transke 75.8 22 0.00047 42.6 11.7 82 213-302 428-512 (653)
281 cd07037 TPP_PYR_MenD Pyrimidin 74.8 78 0.0017 30.8 13.3 78 223-303 77-161 (162)
282 PLN02234 1-deoxy-D-xylulose-5- 74.7 21 0.00046 42.5 11.0 113 170-309 403-519 (641)
283 PTZ00089 transketolase; Provis 74.5 20 0.00043 43.1 10.9 102 177-302 415-519 (661)
284 PLN02582 1-deoxy-D-xylulose-5- 74.4 20 0.00044 43.0 10.8 105 177-308 410-517 (677)
285 PRK09628 oorB 2-oxoglutarate-a 74.2 69 0.0015 34.1 13.8 105 470-577 72-199 (277)
286 TIGR03181 PDH_E1_alph_x pyruva 73.9 17 0.00036 39.9 9.4 87 486-576 145-243 (341)
287 PLN02225 1-deoxy-D-xylulose-5- 72.9 22 0.00047 42.7 10.5 92 205-308 448-542 (701)
288 PRK06154 hypothetical protein; 72.3 29 0.00062 40.8 11.5 113 459-579 55-176 (565)
289 PTZ00182 3-methyl-2-oxobutanat 71.8 27 0.00058 38.6 10.4 59 235-301 143-202 (355)
290 CHL00144 odpB pyruvate dehydro 71.7 27 0.00058 38.1 10.2 40 257-301 131-171 (327)
291 cd02002 TPP_BFDC Thiamine pyro 71.4 1E+02 0.0022 29.9 15.6 114 457-576 39-176 (178)
292 cd07034 TPP_PYR_PFOR_IOR-alpha 71.4 41 0.00089 32.1 10.5 86 208-303 69-159 (160)
293 cd02005 TPP_PDC_IPDC Thiamine 71.0 51 0.0011 32.6 11.3 118 457-576 39-171 (183)
294 PRK06163 hypothetical protein; 70.2 91 0.002 31.5 13.0 114 457-576 49-170 (202)
295 PF01855 POR_N: Pyruvate flavo 69.8 13 0.00028 38.5 6.9 106 177-307 48-157 (230)
296 cd02007 TPP_DXS Thiamine pyrop 69.7 64 0.0014 32.3 11.8 98 471-576 80-187 (195)
297 COG0028 IlvB Thiamine pyrophos 68.9 36 0.00078 39.9 11.1 166 458-631 39-225 (550)
298 TIGR03846 sulfopy_beta sulfopy 67.7 66 0.0014 31.8 11.3 112 457-576 34-153 (181)
299 PRK07119 2-ketoisovalerate fer 67.6 32 0.00069 38.0 9.8 106 177-306 60-173 (352)
300 TIGR03393 indolpyr_decarb indo 67.1 26 0.00057 40.8 9.6 115 459-579 40-166 (539)
301 TIGR03710 OAFO_sf 2-oxoacid:ac 66.5 24 0.00052 41.5 9.1 109 177-307 249-363 (562)
302 cd07039 TPP_PYR_POX Pyrimidine 65.6 1.3E+02 0.0029 29.0 15.5 91 207-303 67-157 (164)
303 CHL00149 odpA pyruvate dehydro 65.5 26 0.00057 38.4 8.7 87 486-576 158-256 (341)
304 PRK12753 transketolase; Review 64.8 39 0.00084 40.6 10.5 83 213-303 434-519 (663)
305 PF00676 E1_dh: Dehydrogenase 62.9 26 0.00057 37.7 7.9 78 498-576 139-222 (300)
306 PLN02790 transketolase 62.6 60 0.0013 39.0 11.6 76 220-302 431-509 (654)
307 cd07038 TPP_PYR_PDC_IPDC_like 62.3 1.4E+02 0.003 28.9 12.2 79 221-302 74-160 (162)
308 PRK12754 transketolase; Review 61.2 59 0.0013 39.0 11.1 82 213-302 434-518 (663)
309 cd03372 TPP_ComE Thiamine pyro 59.3 90 0.0019 30.7 10.5 110 457-576 34-152 (179)
310 cd02000 TPP_E1_PDC_ADC_BCADC T 57.1 65 0.0014 34.4 9.7 88 486-576 127-225 (293)
311 TIGR00173 menD 2-succinyl-5-en 56.7 19 0.00042 40.7 5.9 63 114-186 366-431 (432)
312 COG3958 Transketolase, C-termi 56.7 63 0.0014 34.5 9.0 142 140-308 24-169 (312)
313 PLN02269 Pyruvate dehydrogenas 55.8 77 0.0017 35.1 10.1 77 498-576 176-256 (362)
314 COG0021 TktA Transketolase [Ca 54.9 52 0.0011 38.7 8.8 78 220-304 440-520 (663)
315 KOG1185 Thiamine pyrophosphate 51.5 49 0.0011 37.6 7.6 117 457-579 50-173 (571)
316 TIGR03182 PDH_E1_alph_y pyruva 50.5 90 0.002 33.8 9.6 88 486-576 133-231 (315)
317 PF04273 DUF442: Putative phos 49.6 70 0.0015 29.1 7.2 80 220-304 15-95 (110)
318 PRK09627 oorA 2-oxoglutarate-a 47.0 80 0.0017 35.1 8.6 109 177-307 59-173 (375)
319 PLN02374 pyruvate dehydrogenas 45.1 89 0.0019 35.5 8.7 89 486-576 224-322 (433)
320 PRK08366 vorA 2-ketoisovalerat 43.0 1.6E+02 0.0036 32.9 10.3 101 177-304 61-166 (390)
321 cd00860 ThrRS_anticodon ThrRS 42.1 1E+02 0.0022 25.9 6.9 59 608-672 2-61 (91)
322 KOG0225 Pyruvate dehydrogenase 40.8 76 0.0016 34.5 6.7 100 471-576 172-284 (394)
323 PF04430 DUF498: Protein of un 38.4 24 0.00051 31.9 2.3 35 607-641 53-88 (110)
324 PF13519 VWA_2: von Willebrand 37.6 1.1E+02 0.0025 28.5 7.2 73 204-289 99-171 (172)
325 cd00032 CASc Caspase, interleu 37.5 1.1E+02 0.0023 31.8 7.4 56 235-292 10-68 (243)
326 PF03129 HGTP_anticodon: Antic 37.2 1.5E+02 0.0032 25.3 7.2 57 609-671 1-61 (94)
327 PRK10329 glutaredoxin-like pro 36.4 1.4E+02 0.003 25.3 6.6 33 610-643 3-35 (81)
328 PF07279 DUF1442: Protein of u 35.9 2.6E+02 0.0057 28.6 9.4 94 177-304 54-149 (218)
329 cd03028 GRX_PICOT_like Glutare 35.6 1.3E+02 0.0028 25.9 6.5 37 607-643 7-47 (90)
330 smart00115 CASc Caspase, inter 35.0 1.4E+02 0.003 30.9 7.8 56 235-292 9-66 (241)
331 KOG1145 Mitochondrial translat 34.8 2.9E+02 0.0062 32.4 10.4 99 203-310 225-343 (683)
332 PF00456 Transketolase_N: Tran 33.1 1.1E+02 0.0024 33.4 6.9 76 498-576 159-240 (332)
333 cd00858 GlyRS_anticodon GlyRS 32.5 1.6E+02 0.0035 26.8 6.9 58 608-672 27-87 (121)
334 TIGR03811 tyr_de_CO2_Ent tyros 31.9 3E+02 0.0066 32.8 10.6 29 276-305 258-286 (608)
335 cd05125 Mth938_2P1-like Mth938 31.4 37 0.0008 31.1 2.4 35 607-641 54-89 (114)
336 cd01455 vWA_F11C1-5a_type Von 30.7 5.7E+02 0.012 25.7 14.3 98 172-292 87-187 (191)
337 PRK09622 porA pyruvate flavodo 30.7 3E+02 0.0066 30.9 10.1 103 177-305 68-176 (407)
338 COG0461 PyrE Orotate phosphori 30.4 1.8E+02 0.004 29.4 7.3 104 167-289 62-181 (201)
339 KOG1201 Hydroxysteroid 17-beta 29.5 7.5E+02 0.016 26.7 13.4 83 204-303 37-120 (300)
340 PF12500 TRSP: TRSP domain C t 29.4 84 0.0018 30.5 4.6 33 607-639 57-89 (155)
341 PRK08367 porA pyruvate ferredo 29.3 2.4E+02 0.0052 31.6 8.9 103 177-305 62-170 (394)
342 TIGR02189 GlrX-like_plant Glut 28.7 2.8E+02 0.0061 24.4 7.6 35 608-643 8-42 (99)
343 cd01453 vWA_transcription_fact 28.1 5.5E+02 0.012 25.1 10.4 71 204-290 107-178 (183)
344 cd00248 Mth938-like Mth938-lik 27.4 43 0.00093 30.3 2.1 35 608-642 53-88 (109)
345 PF03853 YjeF_N: YjeF-related 27.2 88 0.0019 30.5 4.5 44 608-651 27-70 (169)
346 PF10740 DUF2529: Protein of u 27.2 1.4E+02 0.003 29.4 5.6 80 555-640 25-115 (172)
347 COG0075 Serine-pyruvate aminot 26.8 1.7E+02 0.0038 32.6 7.1 88 204-307 55-145 (383)
348 cd03418 GRX_GRXb_1_3_like Glut 26.7 2.9E+02 0.0064 22.1 7.0 65 610-679 2-67 (75)
349 cd03027 GRX_DEP Glutaredoxin ( 26.5 2.6E+02 0.0056 22.6 6.6 38 609-647 2-39 (73)
350 cd00859 HisRS_anticodon HisRS 26.4 1.2E+02 0.0026 25.0 4.7 33 608-640 2-35 (91)
351 cd02017 TPP_E1_EcPDC_like Thia 25.9 7.4E+02 0.016 27.8 11.7 51 498-551 163-218 (386)
352 cd05560 Xcc1710_like Xcc1710_l 24.8 58 0.0013 29.5 2.5 35 607-641 52-87 (109)
353 COG1154 Dxs Deoxyxylulose-5-ph 24.0 6E+02 0.013 30.1 10.8 79 225-312 401-481 (627)
354 PF00070 Pyr_redox: Pyridine n 23.8 1.2E+02 0.0027 25.1 4.2 39 610-651 2-42 (80)
355 PRK13685 hypothetical protein; 23.7 7.7E+02 0.017 26.6 11.4 84 205-292 194-288 (326)
356 PRK13683 hypothetical protein; 23.6 1E+02 0.0022 26.7 3.4 39 266-307 13-51 (87)
357 PLN02309 5'-adenylylsulfate re 23.0 2.7E+02 0.0058 31.9 7.8 66 87-160 85-155 (457)
358 TIGR00365 monothiol glutaredox 22.9 1.2E+02 0.0025 26.8 4.0 37 607-643 11-51 (97)
359 COG0674 PorA Pyruvate:ferredox 22.3 4.5E+02 0.0098 29.1 9.3 107 176-303 58-164 (365)
360 COG4981 Enoyl reductase domain 22.0 2E+02 0.0043 33.4 6.3 53 260-314 140-195 (717)
361 PF09793 AD: Anticodon-binding 21.5 2.1E+02 0.0046 24.9 5.3 55 89-148 8-62 (91)
No 1
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-135 Score=1113.90 Aligned_cols=634 Identities=58% Similarity=0.955 Sum_probs=604.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCC
Q 004970 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (721)
Q Consensus 85 ~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~ 164 (721)
.++.+++++.||.+.+++|.+|++||||.+||++||.++||..+|++||+||+|++|||||+|.||+||.+|+++++.||
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C--------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh
Q 004970 165 D--------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 218 (721)
Q Consensus 165 ~--------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e 218 (721)
+ |||.+||+||||++.|||||||.++++++||+|++++.|++|||++||||+||
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 4 88999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCE
Q 004970 219 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 298 (721)
Q Consensus 219 G~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~ 298 (721)
|+++||+.+|++++|++||+|+|+|+++|++.+...+.+|+.++|+||||+++.++||| |+++|.+|+++|++.++||+
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~-D~e~I~~Ai~~Ak~~~dkPt 241 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGH-DLEAIDKAIEEAKASTDKPT 241 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCC-CHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999999999999999999999999999999888999 99999999999998778999
Q ss_pred EEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Q 004970 299 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 299 lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
+|+|+|++|+|.++++++.++||.||++++++.++++++|+.++|.+|+++++.|+...+++...+++|++.+..|+++|
T Consensus 242 lI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~ 321 (663)
T COG0021 242 LIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKY 321 (663)
T ss_pred EEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999988999999999999999999999999888999999999999656688889999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
||++++|++++++++|..|...+|.+.......+||++++++|..+.+..|+++.+|+||.+|+++.+++...|..+.|+
T Consensus 322 Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~ 401 (663)
T COG0021 322 PELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYA 401 (663)
T ss_pred hHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCC
Confidence 99999999999999999998889988654445899999999999999999999999999999999988777788756799
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+|++.+||+|++|.++++|||++|. ++||..||..|++|++++||++|+|++||++|.|||++++|+||||||++|+++
T Consensus 402 gr~i~~GVREf~M~AimNGialhGg-~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa 480 (663)
T COG0021 402 GRYIHFGVREFAMAAIMNGIALHGG-FIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLA 480 (663)
T ss_pred CCeeEEeeHHHHHHHHHHhHHHhcC-ceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHH
Confidence 9999999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChh
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 618 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~ 618 (721)
.||+|||+.|++|||++|+..+++.|+.+.++|++|+++|+++|.++.+..+.+.+|+|++.+.+ +..+|++||++|++
T Consensus 481 ~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~-~~~pd~iliAtGSE 559 (663)
T COG0021 481 SLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSG-GEDPDVILIATGSE 559 (663)
T ss_pred HhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCccCCCccccccCccEEEeecC-CCCCCEEEEecccH
Confidence 99999999999999999999999999987799999999999999998876778999999998853 11489999999999
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCCCC
Q 004970 619 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAP 698 (721)
Q Consensus 619 v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~g~ 698 (721)
|++|++|++.|+++|+.++||+|+|+++||+|..+|+++|++.+...+|.+|.+...||.+|++..+..||++.||.||+
T Consensus 560 V~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~FG~Sap 639 (663)
T COG0021 560 VELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAP 639 (663)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcCCCCcEEeeccCcCCCC
Confidence 99999999999988899999999999999999999999999987654599999999999999988888999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Q 004970 699 AGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 699 ~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.++|+++||+|+|.|+++++++|
T Consensus 640 ~~~l~~~fGft~e~vv~~~~~~l 662 (663)
T COG0021 640 GDELFKEFGFTVENVVAKAKSLL 662 (663)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999999999999999999875
No 2
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=7e-125 Score=1084.08 Aligned_cols=627 Identities=50% Similarity=0.859 Sum_probs=579.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC---
Q 004970 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD--- 165 (721)
Q Consensus 89 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~--- 165 (721)
++++++||.++++|+.++++||+|++||++|++++||..+|++||+||+|++|||||+|+||+++.+|+++++.||.
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999971
Q ss_pred -----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHH
Q 004970 166 -----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 222 (721)
Q Consensus 166 -----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~ 222 (721)
|+|++||++|||++.|+|+|+|.|+++++||++++++.+++|||++|||+++||.+|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 789999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
||+++|++++|+||++|+|||+++|+++++....+++.++|++|||++++|+||| |+++|.+|+++|+...++|++|++
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~-D~~ai~~A~~~a~~~~~~Pt~I~~ 243 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGH-DADSIKRAVEEARAVTDKPSLLMC 243 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCC-CHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999999999999999999999999987778999999999999999933999 999999999999864589999999
Q ss_pred EEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHH
Q 004970 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 382 (721)
Q Consensus 303 ~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 382 (721)
+|+||+|+++++++.+||+.+++++++++++++++|+.++|++|++|+..|+. .+++....++|++.+.+|++++|++.
T Consensus 244 ~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~ 322 (663)
T PRK12754 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQEA 322 (663)
T ss_pred EeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHCHHHH
Confidence 99999999998889999999999999999999999988889999999999977 66788888999999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCCC----CCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 383 AEFKSISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~p~~~~----~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
+++++.+++.+|..|...+|.|.+ ..+..+||++++++|.++++.+|+++++++|+.+|+++.+++...|++ .||
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~-~~p 401 (663)
T PRK12754 323 AEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAA 401 (663)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccc-cCC
Confidence 999998988889888876666531 224579999999999999999999999999999998876666778977 699
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+|||++||+||+|+++|+|||++|+ ++||++||++|++|+++|||++||+++||++++||+|+++|+||+|||++||++
T Consensus 402 ~r~i~~GIaE~~Mv~iaaGlA~~~G-~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla 480 (663)
T PRK12754 402 GNYIHYGVREFGMTAIANGIALHGG-FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480 (663)
T ss_pred CCeEeeccchhhHHHHHhhHHhcCC-CeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHH
Confidence 9999999999999999999999764 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc--cccccCccEEEecCCCCCCCCEEEEEeC
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTG 616 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g~dvtIva~G 616 (721)
+||+||||+|++|+|+.|+..+++.++++.++|+|||++|+++|.++... ...+.+|+|++.+.. +++|++||++|
T Consensus 481 ~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iiatG 558 (663)
T PRK12754 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA--GQPELIFIATG 558 (663)
T ss_pred HHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCcEEEEecC--CCCCEEEEEEC
Confidence 99999999999999999999999999976589999999999998776422 245778888876532 12599999999
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCC
Q 004970 617 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 696 (721)
Q Consensus 617 ~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~ 696 (721)
+||++|++|++.|+++||+++|||++|++|||++..+|++.+++......|++|++...||.++++..+..+|++.||.|
T Consensus 559 s~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~~~~~~~igi~~FG~S 638 (663)
T PRK12754 559 SEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGES 638 (663)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhhhccCCCCEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999998775234999999999999999766678999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 697 APAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|+++||||+|.|+++++++|
T Consensus 639 g~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 639 APAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 3
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=4.3e-123 Score=1076.62 Aligned_cols=626 Identities=53% Similarity=0.884 Sum_probs=574.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC---
Q 004970 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD--- 165 (721)
Q Consensus 89 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~--- 165 (721)
++++++||.++++|+.++++||+|++||++|++++||..+|++||+||+|++|||||+|+||+++.+|+++++.|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999971
Q ss_pred -----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHH
Q 004970 166 -----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 222 (721)
Q Consensus 166 -----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~ 222 (721)
|++++||++|+|++.|+|+|+|.++++++||++++++.+++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 678999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEE-eccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~-v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
||+++|++++|+||++|+|||+++|+++++....+++.++|++|||+++. | ||| |+++|.+|+++|++..++|++|+
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~v-DGh-D~~~i~~a~~~a~~~~~~P~~I~ 242 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEI-DGH-DPQAIKEAILEAQSVKDKPSLII 242 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEcee-CCC-CHHHHHHHHHHHHHCCCCeEEEE
Confidence 99999999999999999999999999999877788999999999999996 6 999 99999999999986458999999
Q ss_pred EEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHH
Q 004970 302 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 381 (721)
Q Consensus 302 ~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 381 (721)
++|+||+|+++++++.+||+.+++++++++++++++|+.+||.+|+++++.|+. ..++.....+|.+.+.+|++.+|+.
T Consensus 243 ~~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~ 321 (663)
T PRK12753 243 CRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPEL 321 (663)
T ss_pred EEEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHCHHH
Confidence 999999999998889999999999999999999999988899999999999974 5667777889999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC
Q 004970 382 AAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 457 (721)
Q Consensus 382 ~~~~~~~~~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~ 457 (721)
..++++.+.+.+|+.|...+++|. ...+++++|++++++|.++++.+|+++++++|+.+|+++.+++...|++ +|
T Consensus 322 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~-~~ 400 (663)
T PRK12753 322 AAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKE-DP 400 (663)
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhh-cC
Confidence 999999998888888876665542 1234689999999999999999999999999999998876666678976 79
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|+||||+||+||+|+++|+|||++|+ ++||++||++|++|++||||+.|++++||++++||+|+++|+||+|||++||+
T Consensus 401 p~r~i~~GIaEq~mv~~aaGlA~~~G-~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedl 479 (663)
T PRK12753 401 AGNYIHYGVREFGMTAIANGIAHHGG-FVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQL 479 (663)
T ss_pred CCCEEEeeecHHHHHHHHHHHHHhCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHH
Confidence 99999999999999999999999653 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc--cccccCccEEEecCCCCCCCCEEEEEe
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGT 615 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g~dvtIva~ 615 (721)
++||.||||+|++|+|++|++.+++.++++.++|+|||++|+++|.++.+. ...+..|+|++++.+ +++|++||++
T Consensus 480 a~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iia~ 557 (663)
T PRK12753 480 ASLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILKDSG--GKPDLILIAT 557 (663)
T ss_pred HHHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCCcccchhhccCCcEEEeccC--CCCCEEEEEe
Confidence 999999999999999999999999999975689999999999998776532 234778888876532 1369999999
Q ss_pred ChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCC
Q 004970 616 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 695 (721)
Q Consensus 616 G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~ 695 (721)
|+||++|++|+++|+++||+++|||++|++|||++.++|++++++.....+|++|++...+|.++.+.++.++|+|+|+.
T Consensus 558 Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~~~~~~~~~~iGvd~Fg~ 637 (663)
T PRK12753 558 GSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGE 637 (663)
T ss_pred CHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHHHHcCCCCeEEEeCCCcC
Confidence 99999999999999999999999999999999999999998887754222399999988889888776778999999999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 696 SAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 696 ~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|+.++|+++||||+++|+++|++++
T Consensus 638 sg~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 638 SAPADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 4
>PLN02790 transketolase
Probab=100.00 E-value=1.3e-120 Score=1057.08 Aligned_cols=625 Identities=86% Similarity=1.376 Sum_probs=571.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCC---C------
Q 004970 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY---D------ 165 (721)
Q Consensus 95 iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~---~------ 165 (721)
||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||+|+||+++++|++++++|+ +
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999998 1
Q ss_pred ------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHH
Q 004970 166 ------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 227 (721)
Q Consensus 166 ------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~ 227 (721)
|+++++|++|+|++.|+|+|+|.++++++|++++++..+++|||++|||+++||++|||+++
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 67889999999999999999999999888888777777899999999999999999999999
Q ss_pred HHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccC-CCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 228 AGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNG-NTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 228 a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG-~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
|++++|+||++|+|||+++|+++++....+++.++|++|||+++.|.|| | |+++|.+|+++|++..++|++||++|+|
T Consensus 161 A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~h-d~~~l~~a~~~a~~~~~~P~lI~~~T~k 239 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNT-DYDEIRAAIKEAKAVTDKPTLIKVTTTI 239 (654)
T ss_pred HHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCC-CHHHHHHHHHHHHhcCCCeEEEEEEEee
Confidence 9999999999999999999999998877889999999999999999444 8 9999999999998645899999999999
Q ss_pred ccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHH
Q 004970 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFK 386 (721)
Q Consensus 307 g~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 386 (721)
|+|+++++++.+||+.+++++++++++++++|+.+||.+++++++.|.....++.....+|++.+.++..++|+.+++++
T Consensus 240 G~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 319 (654)
T PLN02790 240 GYGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELK 319 (654)
T ss_pred cCCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999888899999999999999999999999988999999998888764455666778999999999999999999999
Q ss_pred HHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccC-CCCccccCC
Q 004970 387 SISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT-PEERNVRFG 465 (721)
Q Consensus 387 ~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~-~p~R~~~~G 465 (721)
+.+.+++|..|...+|+|...++..+||+++++.|.++++.+|+++++++|+.+|+.+.++++..|++ + ||+||||+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~-~~~p~Rfi~~G 398 (654)
T PLN02790 320 SLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQK-DTPEERNVRFG 398 (654)
T ss_pred HHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhh-cCCCCCeEEee
Confidence 99999999999888888865556689999999999999999999999999999888776666788977 5 699999999
Q ss_pred chHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCC
Q 004970 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 545 (721)
Q Consensus 466 IaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPn 545 (721)
||||+|+++|+|||++|.|++||++||++|++|+++|||++|+|++||+|++||+|+++|+||+|||++||+++||+|||
T Consensus 399 IaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPn 478 (654)
T PLN02790 399 VREHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPN 478 (654)
T ss_pred echHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCC
Confidence 99999999999999976227999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHH
Q 004970 546 ILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKA 625 (721)
Q Consensus 546 l~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~A 625 (721)
|+|++|+|++|+..+|++++.+.++|+|||++|+++|.++.+....+.+|+|++.+.+.+.++|++||++|+||++|++|
T Consensus 479 l~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~v~~Al~A 558 (654)
T PLN02790 479 ILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEIAAKA 558 (654)
T ss_pred cEEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCCcccccccCcEEEEeCCCCCCCCEEEEEcCHHHHHHHHH
Confidence 99999999999999999999766899999999999887665333558889988876420012799999999999999999
Q ss_pred HHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCCCCHHHHHHH
Q 004970 626 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 705 (721)
Q Consensus 626 a~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~g~~~~l~~~ 705 (721)
++.|+++||+++|||++|++|||++.+.|++.+++...+.+|++|+++..||+++++.+..++|+|+|+.+|+.++|+++
T Consensus 559 a~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~igvd~Fg~sg~~~~l~~~ 638 (654)
T PLN02790 559 AKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKE 638 (654)
T ss_pred HHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEEEeCCCcCcCCHHHHHHH
Confidence 99999999999999999999999999998888884444446999999999999887666678999999999999999999
Q ss_pred hCCCHHHHHHHHHHhC
Q 004970 706 FGITAEAVITAAKEVC 721 (721)
Q Consensus 706 ~gl~~e~I~~~i~~ll 721 (721)
||||+++|+++|++++
T Consensus 639 ~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 639 FGFTVENVVAAAKSLL 654 (654)
T ss_pred hCCCHHHHHHHHHHhC
Confidence 9999999999999875
No 5
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=5.4e-120 Score=1051.62 Aligned_cols=625 Identities=57% Similarity=0.952 Sum_probs=571.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC----
Q 004970 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD---- 165 (721)
Q Consensus 90 ~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~---- 165 (721)
+++++||.++++|+.++++||+|++||++|++++||..+|++||+||+|++|||||+|+||+++.+|+++++.|+.
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999972
Q ss_pred ----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHH
Q 004970 166 ----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANE 223 (721)
Q Consensus 166 ----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~E 223 (721)
|++++||++|+|++.|+|+|+|.|+++++||+++++..+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 6788999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 224 ASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 224 al~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
|+++|++++|+||++|+|||+++++++++....+++.++|++|||++++|.||| |++++.+|++++++..++|++|+++
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~-D~~ai~~A~~~a~~~~~~P~~I~~~ 240 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGH-DLAAIDAAIEEAKASKDKPTLIEVT 240 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCC-CHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 999999999999999999999999999986667899999999999999977999 9999999999998733589999999
Q ss_pred EeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHH-HhhhhhhHHHHHHHHHHHHhhChHHH
Q 004970 304 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKYPEEA 382 (721)
Q Consensus 304 T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~ 382 (721)
|+||+|+++++++.+||+.+++++++++++++++|+.+||.+|+++++.|+.. ..++....++|++.+.+|++++|+.+
T Consensus 241 T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~ 320 (653)
T TIGR00232 241 TTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELA 320 (653)
T ss_pred eeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHH
Confidence 99999999998899999999999999999999999878999999999999664 56777888999999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccc
Q 004970 383 AEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV 462 (721)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~ 462 (721)
+++++++++++|..|...+|+|....+..+||++++++|.++++.+|+++++++|+.+|+++..++...|++ +||+|||
T Consensus 321 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~-~~p~rfi 399 (653)
T TIGR00232 321 AEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHE-NPLGNYI 399 (653)
T ss_pred HHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhh-cCCCCeE
Confidence 999999988889888887877742335689999999999999999999999999998887654333334866 7999999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhc
Q 004970 463 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542 (721)
Q Consensus 463 ~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~ 542 (721)
|+||+||+|+++|+|||++|+ ++||++||++|++|+++|||+.|++++||++++||+|+++|+||+|||++||+++||+
T Consensus 400 ~~GIaEq~mv~~AaGlA~~gG-~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~ 478 (653)
T TIGR00232 400 HYGVREFAMGAIMNGIALHGG-FKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRA 478 (653)
T ss_pred eecccHHHHHHHHHHHHHcCC-CeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhc
Confidence 999999999999999999664 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHH
Q 004970 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 622 (721)
Q Consensus 543 iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~a 622 (721)
||||+|++|+|++|++.++++++++.++|+|||++|++.|.++.+....+..|+|++.+.. |+||+||++|+||++|
T Consensus 479 iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~~~~~~~~~G~~vl~~~~---g~dv~iia~G~~v~~a 555 (653)
T TIGR00232 479 IPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKDSK---GPDIILIATGSEVSLA 555 (653)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCcccccccCCCcEEEEecC---CCCEEEEEeChHHHHH
Confidence 9999999999999999999999966789999999999988766433245788888876432 6899999999999999
Q ss_pred HHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCCCCHHHH
Q 004970 623 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 702 (721)
Q Consensus 623 l~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~g~~~~l 702 (721)
++|++.|+++||+++|||++|++|||++..+|+.++++.... +|++|+|+..||..++.....++|+|+|+.+|++++|
T Consensus 556 l~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~-vvtvEe~~~~g~~~~~~~~~~~igvd~fg~sg~~~~L 634 (653)
T TIGR00232 556 VEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKL 634 (653)
T ss_pred HHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc-eEEEecccHhHHHHhcCCcceEEEecCCcCCCCHHHH
Confidence 999999999999999999999999999887777888876544 5999999998887655433368999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 004970 703 YKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 703 ~~~~gl~~e~I~~~i~~ll 721 (721)
+++||||+++|+++|++++
T Consensus 635 ~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 635 FEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999875
No 6
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.1e-119 Score=1050.45 Aligned_cols=626 Identities=55% Similarity=0.932 Sum_probs=564.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC
Q 004970 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (721)
Q Consensus 86 ~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~ 165 (721)
.+++++|++||.++++|+.++++||+|++||++|++++||+.+|+|||+||+|++|||||+|+||+++++|+++++.|+.
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 35678899999999999999999999999999999999999899999999999999999999999999999999999972
Q ss_pred --------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 166 --------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 166 --------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
|+++++|++|+|++.|+|+|+|.++++++||+++++..+++|||++|||+++||
T Consensus 84 ~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG 163 (661)
T PTZ00089 84 LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEG 163 (661)
T ss_pred CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhH
Confidence 678999999999999999999999999999998888889999999999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEE
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~l 299 (721)
++|||+++|++++|+||++|+|||+++|++++.....+++.++|++|||+++.|+|||+|+++|.+|+++|++..++|++
T Consensus 164 ~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~ 243 (661)
T PTZ00089 164 VSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKL 243 (661)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 99999999999999999999999999999999877789999999999999999889977999999999999873379999
Q ss_pred EEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCC-CCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Q 004970 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 300 I~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~-p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
|+++|+||+|+ .++++.+||+.+++++++++++++++|+.. +|.+++++++.|....+++.....+|++.+.++.+++
T Consensus 244 I~~~T~kG~G~-~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 322 (661)
T PTZ00089 244 IIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAF 322 (661)
T ss_pred EEEEeeecCCC-CcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHC
Confidence 99999999995 667889999999999999999999999544 6999999988786544445556779999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
|+...++.+.+.+.+|..|...+|+|...++..+||++++++|.++++.+|+++++++|+..|+.+..+...+|++ .||
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~-~~P 401 (661)
T PTZ00089 323 PKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTK-ASP 401 (661)
T ss_pred HHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccc-cCC
Confidence 9999999999988888888777777754455789999999999999999999999999998888654344457876 699
Q ss_pred -CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 459 -ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 459 -~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
+||||+|||||+|+++|+|||++|+ ++||++||++|++|++||||+.|+|++||+|++||+|+++|+||+|||++||+
T Consensus 402 ~~rfi~~GIaEq~mv~~AaGlA~~~G-~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedi 480 (661)
T PTZ00089 402 EGRYIRFGVREHAMCAIMNGIAAHGG-FIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETL 480 (661)
T ss_pred CCCeeeeeecHHHHHHHHHHHHHcCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHH
Confidence 8999999999999999999999553 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeCh
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 617 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~ 617 (721)
++||+||||+|++|+|++|+..+|++++++.++|+|||++|+++|.++.+....+..|.|++++.+ +++|++||++|+
T Consensus 481 a~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~g~~vl~~~~--~~~dv~iia~G~ 558 (661)
T PTZ00089 481 ALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGAYIVVDFT--NSPQLILVASGS 558 (661)
T ss_pred HHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcCCCccccccCceEEEeccC--CCCCEEEEeeCH
Confidence 999999999999999999999999999976789999999999988766443222334556765421 148999999999
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcc-cCCceEEEEcccccccchhhhcCCceEEEeccCCCC
Q 004970 618 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 696 (721)
Q Consensus 618 ~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~-~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~ 696 (721)
||.+|++|++.|++ ||+++|||++|++|||++.+.|++.+++ .+.. +|++|++...||..+.. .++|++.|+.+
T Consensus 559 ~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~-~vtiE~~~~~g~~~~~~---~~igv~~Fg~s 633 (661)
T PTZ00089 559 EVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVP-VLSVEAYVSFGWEKYSH---VHVGISGFGAS 633 (661)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCc-eEeHHhhHHHHHHhcCC---eEEECCCcccc
Confidence 99999999999999 9999999999999999999888888887 4444 49999999999976553 57999779999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 697 APAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|+.++|+++||||+++|+++|++++
T Consensus 634 g~~~~l~~~~Gl~~e~I~~~i~~~l 658 (661)
T PTZ00089 634 APANALYKHFGFTVENVVEKARALA 658 (661)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 7
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-113 Score=932.27 Aligned_cols=586 Identities=49% Similarity=0.781 Sum_probs=527.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhC
Q 004970 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (721)
Q Consensus 84 ~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G 163 (721)
++..++.-+++||...++++.++++||+++++|.+++...||+.+|+++|+||+|++|||||||+||+|+.+|+++++.|
T Consensus 6 ~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G 85 (632)
T KOG0523|consen 6 DSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAG 85 (632)
T ss_pred hhhhhHHHhhhhhhhhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhc
Confidence 44557888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 164 YD------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 164 ~~------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
+. +++++||++||||++|+|||++.+++++ .+++|||++||||++||
T Consensus 86 ~~~~edl~~~Rq~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k---------~~~rv~~vlGDG~~~eG 156 (632)
T KOG0523|consen 86 YDREEDLKNFRQIGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGK---------ASNRVYCVLGDGCLTEG 156 (632)
T ss_pred cCcHHHHHHHHhhCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhcc---------ccceEEEEEcCchhccc
Confidence 63 7789999999999999999999998864 27899999999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHH-HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCE
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK-RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 298 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~-~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~ 298 (721)
++|||+++|++++|+||++|+|+|+.++++++...+.+|+.+ ++++|||+++.| ||+ |+++|.++|.+|+...++|+
T Consensus 157 ~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V-~~~-d~d~i~ka~~~a~~~k~kpt 234 (632)
T KOG0523|consen 157 SVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIV-DGG-DVDEIRKAIGKAKSVKGKPT 234 (632)
T ss_pred hHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEE-cCc-CHHHHHHHHhhhhhccCCce
Confidence 999999999999999999999999999999999999999998 999999999998 999 99999999999987678999
Q ss_pred EEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Q 004970 299 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 299 lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
.|.++|.+|+|.+..+ +..|||.|+.+++++++++.++||...|.++++++ .+
T Consensus 235 ~i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~--------------------------~~ 287 (632)
T KOG0523|consen 235 AIKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVK--------------------------LY 287 (632)
T ss_pred eeeeeeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcceeEEeccccc--------------------------cC
Confidence 9999999999999887 89999999999999999998888777788877642 33
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
|+...+..+.....+|..|+..+|+|+++++.++||++++.+|.++++.+|+++++++|+..|+.+ +.|++ +||
T Consensus 288 p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t-----d~~~~-~~p 361 (632)
T KOG0523|consen 288 PEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT-----DFFPK-RFP 361 (632)
T ss_pred CCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh-----hhccc-cCc
Confidence 443344445556677888999999999998889999999999999999999999999999999875 33544 899
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+|||++||+||||+++|+|+|.+|. ++|||.||++|++|++||+|+.|+.+.+|+++++|+++++|+||||||++||++
T Consensus 362 ~R~i~~giaEq~mv~ia~G~a~~g~-~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA 440 (632)
T KOG0523|consen 362 ERFIECGIAEQNMVGIANGIACRGR-TIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIEDLA 440 (632)
T ss_pred cceEEEeeehhhhHHhhhchhcCCC-ccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccHHHHH
Confidence 9999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChh
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 618 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~ 618 (721)
+||+||||+|++|+|++|+..++..|+...+.|.+++++|++.+.+...+.+.+..|+|++.+. .+||+||++|++
T Consensus 441 ~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~~~igkg~~vl~~~----~~dV~LiG~Gs~ 516 (632)
T KOG0523|consen 441 MFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEIEEIGKGKYVLQEV----EPDVILIGTGSE 516 (632)
T ss_pred HHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCchhhhccccEEEecC----CCCEEEEeccHH
Confidence 9999999999999999999999999998666699999999999988776666677788877653 469999999999
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccc---------cchhhhcCCceEEE
Q 004970 619 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF---------GWEKIVGSKGKAIG 689 (721)
Q Consensus 619 v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~---------G~~~~v~~~~~~ig 689 (721)
|++|++||+.|+++||+++|||++||+|||...+. +..+.....+.|+|++... +|+.+.+..+..+|
T Consensus 517 v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~---~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~~~ 593 (632)
T KOG0523|consen 517 VQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIR---SLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPSLG 593 (632)
T ss_pred HHHHHHHHHHHHhcCceEEEecccceeecchHHhh---hhhcccceeEEEccCCCCCcchhheeeehhcccCCccceeec
Confidence 99999999999999999999999999999977663 3322222233667776554 34555544457899
Q ss_pred eccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 690 IDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 690 ~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|+|+.+|++.+|+++|||+++.|+++++.+|
T Consensus 594 ~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~ 625 (632)
T KOG0523|consen 594 VDTFGRSGPPPELLKMFGITARHIAAAALSLI 625 (632)
T ss_pred cccCCcCCCCHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999874
No 8
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6.1e-106 Score=936.02 Aligned_cols=594 Identities=60% Similarity=0.945 Sum_probs=522.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhC
Q 004970 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (721)
Q Consensus 84 ~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G 163 (721)
+.+.|+++|++||+++++|+..+++||+|+++|++|++++||+.+|++||+||+|++|||||+|+||+++++|+++++.|
T Consensus 4 ~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~G 83 (624)
T PRK05899 4 DMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLAG 83 (624)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHcC
Confidence 34448999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred C-C-------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 164 Y-D-------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 164 ~-~-------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+ - ++++++|+||+|+|.|+|+|+|.++++.+|+++..+..+++|||++|||+++
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~ 163 (624)
T PRK05899 84 YDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM 163 (624)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh
Confidence 8 2 5667999999999999999999999988888877777789999999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCC
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P 297 (721)
+|++|||+++|++++|+++++|+|||++++++++.....+++.+++++|||+++.| ||| |++++.++++++++ .++|
T Consensus 164 ~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~V-dG~-d~~~l~~al~~a~~-~~~P 240 (624)
T PRK05899 164 EGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEV-DGH-DVEAIDAAIEEAKA-STKP 240 (624)
T ss_pred chHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEE-CCC-CHHHHHHHHHHHHh-cCCC
Confidence 99999999999999999999999999999998887656789999999999999998 999 99999999999987 6899
Q ss_pred EEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 004970 298 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 377 (721)
Q Consensus 298 ~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 377 (721)
++|+++|+||+|++++++..+||+.++++++++++++++++..+||.++.++++.|++..+++......|...
T Consensus 241 ~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 313 (624)
T PRK05899 241 TLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEK------- 313 (624)
T ss_pred EEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHh-------
Confidence 9999999999999999888899999999999999999888766788888877777765443333222222211
Q ss_pred ChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC
Q 004970 378 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 457 (721)
Q Consensus 378 ~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~ 457 (721)
+. .+..++|++++++|.+++++||+++++++|+..++.........|..++|
T Consensus 314 -----------------------~~-----~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~ 365 (624)
T PRK05899 314 -----------------------FA-----GEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDY 365 (624)
T ss_pred -----------------------hc-----ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCC
Confidence 10 13578999999999999999999999999997766542211234432369
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|+||||+||+||+|+|+|+|||+.|. ++||+++|++|++|+++|||+.|++++||+++++++|+++|++|+|||++||+
T Consensus 366 p~R~~d~GIaE~~~vg~A~GlA~~G~-~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edi 444 (624)
T PRK05899 366 SGRYIHYGVREFAMAAIANGLALHGG-FIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444 (624)
T ss_pred CCCeeeeChhHHHHHHHHHHHHHcCC-CeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHH
Confidence 99999999999999999999999993 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-ccccccCccEEEecCCCCCCCCEEEEEeC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGTG 616 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~-~~~~~~~G~~~v~~~~~~~g~dvtIva~G 616 (721)
++||++|||+|++|+|++|++++++++++..++|+|||++|++.|.++.+ ....++.|+++++ + |+|+|||++|
T Consensus 445 a~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~l~-~----G~dvtiia~G 519 (624)
T PRK05899 445 ASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKGGYVLR-D----DPDVILIATG 519 (624)
T ss_pred HHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcCCccccccccCCcEEEe-c----CCCEEEEEeC
Confidence 99999999999999999999999999997448999999999988766543 2356888986664 4 5899999999
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCC
Q 004970 617 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 696 (721)
Q Consensus 617 ~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~ 696 (721)
+|+++|++|++.|+++||+++|||++|++|||++...+....+.+....+|++|++...||..++..+..++|++.|+.+
T Consensus 520 ~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~iGv~~f~~~ 599 (624)
T PRK05899 520 SEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGAS 599 (624)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceEEECCCCCCC
Confidence 99999999999999999999999999999999986555556664433334888988888898887767789999669999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 697 APAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|+++||||+++|+++|++++
T Consensus 600 g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 600 APADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 9
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.3e-100 Score=835.23 Aligned_cols=536 Identities=23% Similarity=0.314 Sum_probs=461.0
Q ss_pred hhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCc
Q 004970 71 IRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh 150 (721)
..+..+++++.++..| |+++|++||..+++.+++ ++||+|++||++|+++|||++ ||+ |.|+||||+||
T Consensus 6 ~~i~~P~dLk~ls~~e-L~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~V---F~s------P~D~~IwDVgH 74 (627)
T COG1154 6 DKINSPADLKKLSIEE-LPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHYV---FDS------PKDKLIWDVGH 74 (627)
T ss_pred hhcCCHHHHhhCCHHH-HHHHHHHHHHHHHHHhcc-CCCccCCCcChhhhhHHHHHH---hCC------CCCCeEEecCc
Confidence 4566788999888888 999999999999999998 999999999999999999999 786 89999999999
Q ss_pred chHHHHHHHHHhCCC----------Cc------------ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEE
Q 004970 151 GCMLQYALLHLAGYD----------SV------------QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTY 208 (721)
Q Consensus 151 ~~~~~y~~l~l~G~~----------gi------------e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv 208 (721)
|+ |.++.|+|+. |+ -|.+||.+++||+|+|||.|..+++. +++|+
T Consensus 75 Qa---YpHKiLTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~----------~~~vv 141 (627)
T COG1154 75 QA---YPHKILTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGE----------DRNVV 141 (627)
T ss_pred cc---chhHHhcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCC----------CCcEE
Confidence 99 9999999963 22 26899999999999999999987763 78999
Q ss_pred EEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc--------cc------------------------
Q 004970 209 VILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--------FT------------------------ 256 (721)
Q Consensus 209 ~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~--------~~------------------------ 256 (721)
|+||||+++.||+|||||.|+..--.|+++|+|||+|||+.++... ..
T Consensus 142 aVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~ 221 (627)
T COG1154 142 AVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRF 221 (627)
T ss_pred EEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999999999999993322689999999999999988611 00
Q ss_pred -----ccHH------HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCC-CCCCcccCCC-
Q 004970 257 -----ENVD------KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNK-ANSYSVHGSA- 323 (721)
Q Consensus 257 -----~~~~------~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~-~~~~~~H~~~- 323 (721)
+.+. .+|+.+||+|+.++||| |+++|..+|+.+++ .++|++||+.|.|||||.++ +++.+||+..
T Consensus 222 ~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGH-ni~~Li~~Lk~~kd-~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~ 299 (627)
T COG1154 222 AKRAEESIKGLLVPGTLFEELGFNYIGPIDGH-NLEELIPTLKNAKD-LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGP 299 (627)
T ss_pred HHHHHHhhhcccCchhhHHHhCCeeECCcCCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCCCCChhhcChhhccCCCC
Confidence 0011 27999999999999999 99999999999998 89999999999999999999 4677899853
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCC
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPT 403 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~ 403 (721)
++..+ . |. .+ +
T Consensus 300 f~~~~------------------t------------g~-------------------------------~~--------~ 310 (627)
T COG1154 300 FDPIE------------------T------------GQ-------------------------------SK--------K 310 (627)
T ss_pred CCccc------------------c------------Cc-------------------------------cC--------C
Confidence 22100 0 00 00 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCC
Q 004970 404 YTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 483 (721)
Q Consensus 404 ~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~ 483 (721)
. .....++-+.|++.|.+++++|++++.+++.+...+ ++.+|++ +||+||||+||||||+|++|+|||+.|
T Consensus 311 ~--~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt-----GL~~F~~-~fP~R~fDVGIAEQHAVT~AAGlA~~G- 381 (627)
T COG1154 311 S--KPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT-----GLVKFSK-KFPDRFFDVGIAEQHAVTFAAGLAAEG- 381 (627)
T ss_pred C--CCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC-----ChHHHHH-hCchhheehhhhHHHHHHHHHHHHhCC-
Confidence 0 001234667889999999999999999999996544 3467987 899999999999999999999999999
Q ss_pred CCccEEEEchhHHHhHHHH-HHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHH
Q 004970 484 GLIPYCATFFVFTDYMRAA-IRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAY 561 (721)
Q Consensus 484 ~~~Piv~~~~~F~~r~~dq-ir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l 561 (721)
++|||++|++|+||+||| ||++|+||+||+|++ |+.| +|.||+|||+++|+++||.||||.|++|+|++|+..||
T Consensus 382 -~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faI--DRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 382 -MKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAI--DRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred -CCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEE--ecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence 699999999999999999 788999999999999 6666 89999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEcCCCCCCCCCC-ccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEe
Q 004970 562 KVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 640 (721)
Q Consensus 562 ~~a~~~~~~P~~Irl~r~~~~~~~~~-~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~ 640 (721)
++++..+++|+.||+||++.+..... ..+.+++|+|+++++ |.||.||++|.++..|++|++.|.++||+++|||
T Consensus 459 ~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~----G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd 534 (627)
T COG1154 459 YTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKE----GEKVAILAFGTMLPEALKVAEKLNAYGISVTVVD 534 (627)
T ss_pred HHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEec----CCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEc
Confidence 99998766999999999976543221 245688999999987 6999999999999999999999999999999999
Q ss_pred cCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhhc---------CCceEEEe-ccCCCCCCHHHHHHHhCCC
Q 004970 641 FVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIVG---------SKGKAIGI-DRFGASAPAGKIYKEFGIT 709 (721)
Q Consensus 641 ~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v~---------~~~~~ig~-d~f~~~g~~~~l~~~~gl~ 709 (721)
++++||+|++.+. .+.+++ ..+||+||+.. +|+++.|. .+..++|+ |.|+++|+++++++.+|||
T Consensus 535 ~rfvkPlD~~ll~---~La~~h-~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 535 PRFVKPLDEALLL---ELAKSH-DLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred CeecCCCCHHHHH---HHHhhc-CeEEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCCC
Confidence 9999999998653 455555 44599999986 56776542 35678999 7999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 004970 710 AEAVITAAKEVC 721 (721)
Q Consensus 710 ~e~I~~~i~~ll 721 (721)
+++|+++|.+++
T Consensus 611 ~~~i~~~i~~~l 622 (627)
T COG1154 611 AEGIARRILEWL 622 (627)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 10
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=8.1e-98 Score=857.28 Aligned_cols=537 Identities=21% Similarity=0.269 Sum_probs=447.7
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCC
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~G 149 (721)
..++-.+++++.++..+ |+++|++||+.+++++.+ .+||+|++||++||+++||+. ||. ++||||||+|
T Consensus 34 l~~i~~p~dlk~l~~~~-l~~la~~iR~~ii~~~~~-~~GH~g~~Ls~vel~~aL~~~---~~~------p~Dr~i~s~G 102 (677)
T PLN02582 34 LDTINYPIHMKNLSVKE-LKQLADELRSDVIFNVSK-TGGHLGSSLGVVELTVALHYV---FNA------PQDKILWDVG 102 (677)
T ss_pred hhhCCCHHHHhhCCHHH-HHHHHHHHHHHHHHHHHh-cCCCcCccccHHHHHHHHHHh---hCC------CCCeEEEECc
Confidence 55677788888777777 999999999999999997 589999999999999999975 442 5799999999
Q ss_pred cchHHHHHHHHHhCC----------------C------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 150 HGCMLQYALLHLAGY----------------D------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 150 h~~~~~y~~l~l~G~----------------~------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|++|.+| .++|+ + +.++++|++|++++.|+|+|+|.++++ .+++|
T Consensus 103 H~ay~~~---~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v 169 (677)
T PLN02582 103 HQSYPHK---ILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKG----------KKNNV 169 (677)
T ss_pred chHHHHH---HHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcC----------CCCEE
Confidence 9995544 44443 1 567899999999999999999998765 27899
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc-cc--------ccccccc--------cc--------------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SI--------DGDTEIA--------FT-------------- 256 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~-~i--------~~~~~~~--------~~-------------- 256 (721)
||++|||++++|++|||+++|+++++ |+++|+|||++ +| +.++... ..
T Consensus 170 ~~viGDG~~~~G~~~Ealn~a~~~~~-~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~ 248 (677)
T PLN02582 170 VAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVT 248 (677)
T ss_pred EEEecccccchhhHHHHHHHHHhhCc-CEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999997 89999999998 33 3333211 00
Q ss_pred -------ccHH----------------HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcC-CCCEEEEEEEeeccCCCC
Q 004970 257 -------ENVD----------------KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIGFGSPN 312 (721)
Q Consensus 257 -------~~~~----------------~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~lI~~~T~kg~G~~~ 312 (721)
.++. .+|++|||+|+.++||| |+++|.++|+++++.. ++|++||++|+||+|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGH-d~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ 327 (677)
T PLN02582 249 KQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPY 327 (677)
T ss_pred HhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCCh
Confidence 1111 25999999999888999 9999999999998732 699999999999999999
Q ss_pred CC-CCCcccCCC-CChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhc
Q 004970 313 KA-NSYSVHGSA-LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 390 (721)
Q Consensus 313 ~~-~~~~~H~~~-~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 390 (721)
++ +..+||+.. ++.++.+ +
T Consensus 328 ae~~~~~~H~~~~f~~~~g~-----------~------------------------------------------------ 348 (677)
T PLN02582 328 AERAADKYHGVVKFDPATGK-----------Q------------------------------------------------ 348 (677)
T ss_pred hhcChhhcCCCCCCCcccCC-----------c------------------------------------------------
Confidence 95 455889753 2211100 0
Q ss_pred CCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHH
Q 004970 391 GQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHG 470 (721)
Q Consensus 391 ~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~ 470 (721)
.+ + .....++.++++++|.+++++||+++++++|++++++ +..|++ +||+||||+|||||+
T Consensus 349 --~~-------~----~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~g-----l~~f~~-~fP~R~fdvGIAEq~ 409 (677)
T PLN02582 349 --FK-------V----KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFAR-RFPTRCFDVGIAEQH 409 (677)
T ss_pred --cC-------C----CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccc-----hHHHHH-HcCccccccCcCHHH
Confidence 00 0 0001356678999999999999999999999976654 246877 799999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEE
Q 004970 471 MGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILML 549 (721)
Q Consensus 471 ~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~ 549 (721)
|+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+|+++++|+ +|+||+|||+++|+++||+||||+|+
T Consensus 410 ~vg~AaGLA~~G--~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH~~~~Dia~lr~iPnl~V~ 486 (677)
T PLN02582 410 AVTFAAGLACEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTYMACLPNMVVM 486 (677)
T ss_pred HHHHHHHHHHCC--CeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcccccHHHHHHhcCCCCEEE
Confidence 999999999999 699999999999999999865 69999999999998888 67899999999999999999999999
Q ss_pred eeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-ccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHH
Q 004970 550 RPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT-SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAA 626 (721)
Q Consensus 550 ~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~--~~-~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa 626 (721)
+|+|+.|++.+|++++...++|+|||++|+..+... .. ..+.+++|++.++++ |.|++||++|+||++|++|+
T Consensus 487 ~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~----G~dvtIva~G~~v~~Al~Aa 562 (677)
T PLN02582 487 APSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLE----GERVALLGYGTAVQSCLAAA 562 (677)
T ss_pred eeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEe----CCCEEEEeecHHHHHHHHHH
Confidence 999999999999999965569999999998754322 11 123577898888876 68999999999999999999
Q ss_pred HHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhc------------CCceEEEe-ccC
Q 004970 627 EELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGKAIGI-DRF 693 (721)
Q Consensus 627 ~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~------------~~~~~ig~-d~f 693 (721)
+.|+++||+++|||++|++|||++.+ .++.+++. .+||+|++...||++.+. .+..++|+ |+|
T Consensus 563 ~~L~~~GI~~~VId~~~lkPlD~~~i---~~~~k~~~-~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F 638 (677)
T PLN02582 563 SLLERHGLSATVADARFCKPLDRALI---RSLAKSHE-VLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRY 638 (677)
T ss_pred HHHHhcCCCEEEEEcCcCCCCCHHHH---HHHhhhCC-EEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcc
Confidence 99999999999999999999999876 36666664 469999999988876431 13457899 899
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 694 GASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 694 ~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+++|++++|+++||||+++|+++|++++
T Consensus 639 ~~~G~~~~L~~~~GL~~e~I~~~i~~~l 666 (677)
T PLN02582 639 IDHGAPADQLAEAGLTPSHIAATVLNVL 666 (677)
T ss_pred cCcCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.6e-97 Score=858.61 Aligned_cols=535 Identities=21% Similarity=0.308 Sum_probs=455.5
Q ss_pred hhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcc
Q 004970 72 RAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHG 151 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~ 151 (721)
++-.+++++.++..+ |+++|.+||..+++++.+ ++||+|++||++|++++||+. ||+ +|||||||+||+
T Consensus 3 ~i~~p~dl~~l~~~~-l~~la~~iR~~~i~~~~~-~~GH~g~~ls~vel~~aL~~~---~~~------~rDr~i~s~GH~ 71 (617)
T TIGR00204 3 LINSPQELRLLSIDE-LEKLCDELRRYLLESVSA-SGGHLASGLGTVELTVALHYV---FNT------PKDQFIWDVGHQ 71 (617)
T ss_pred CCCCHHHHhhCCHHH-HHHHHHHHHHHHHHHHhc-cCCCcCcchhHHHHHHHHHhh---CCC------CCCcEEEecchH
Confidence 355678889898777 999999999999999985 999999999999999999976 665 899999999999
Q ss_pred hHHHHHHHHHhCCC---------------------Ccc-cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEE
Q 004970 152 CMLQYALLHLAGYD---------------------SVQ-VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 209 (721)
Q Consensus 152 ~~~~y~~l~l~G~~---------------------gie-~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~ 209 (721)
+ |+++.++|+. +++ +++||+|+|+|.|+|+|+|.++++. +.+|||
T Consensus 72 ~---Y~~~~~~G~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~----------~~~v~~ 138 (617)
T TIGR00204 72 A---YPHKLLTGRREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGA----------DRKTVC 138 (617)
T ss_pred H---HHHHHHhCcHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCC----------CCEEEE
Confidence 9 8889999862 345 4899999999999999999997752 789999
Q ss_pred EECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccc-------------------------cc---c-HH
Q 004970 210 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------------------------TE---N-VD 260 (721)
Q Consensus 210 viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~-------------------------~~---~-~~ 260 (721)
++|||+++||++|||+++|++++|++ ++|+|||+++++++++... .+ + +.
T Consensus 139 ~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 217 (617)
T TIGR00204 139 VIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA 217 (617)
T ss_pred EECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999955 9999999999999875110 00 1 33
Q ss_pred HH--------------HhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCCCC-CCcccCCCCC
Q 004970 261 KR--------------FEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKAN-SYSVHGSALG 325 (721)
Q Consensus 261 ~~--------------~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~~~ 325 (721)
++ |++|||+|+..+||| |+++|.++|+++++ .++|++||++|+||+|++++++ +..||+.++.
T Consensus 218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGh-d~~~l~~al~~ak~-~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~ 295 (617)
T TIGR00204 218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGH-DLLELIETLKNAKK-LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPF 295 (617)
T ss_pred HHHHHhhhhccCccchHHHcCCcEEcccCCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCCCCchhhcChhhccCCCCC
Confidence 33 999999999434999 99999999999987 6789999999999999999864 4678975421
Q ss_pred hhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCC
Q 004970 326 AKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT 405 (721)
Q Consensus 326 ~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~ 405 (721)
+.+ .++ .| .
T Consensus 296 ~~~-------~~~------------------------------------------------------~~--------~-- 304 (617)
T TIGR00204 296 DLS-------TGC------------------------------------------------------LP--------K-- 304 (617)
T ss_pred Chh-------hCC------------------------------------------------------cC--------C--
Confidence 100 000 00 0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCC
Q 004970 406 PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGL 485 (721)
Q Consensus 406 ~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~ 485 (721)
......+++++++++|.+++++||+++++++|+.++++ +..|++ +||+||||+|||||+|+|+|+|||+.| +
T Consensus 305 ~~~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----~~~f~~-~fP~R~~d~GIaEq~~vg~AaGlA~~G--~ 376 (617)
T TIGR00204 305 SKSALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG-----LDKFSR-KFPDRYFDVAIAEQHAVTFAAGMAIEG--Y 376 (617)
T ss_pred CCCCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC-----hHHHHH-HCccccccCCccHHHHHHHHHHHHHCC--C
Confidence 00113478999999999999999999999999965543 356877 799999999999999999999999999 6
Q ss_pred ccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHH
Q 004970 486 IPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 564 (721)
Q Consensus 486 ~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a 564 (721)
+||+++|++|++|++|||++ .|++++||+|+++++|+. |+||+|||+++|+++||+||||+|++|+|+.|++.+|+++
T Consensus 377 ~Pvv~~~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a 455 (617)
T TIGR00204 377 KPFVAIYSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTG 455 (617)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999976 599999999999999985 9999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEcCCCCCCCCC-CccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 565 VANRKRPSILALSRQKLPHLAG-TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 565 ~~~~~~P~~Irl~r~~~~~~~~-~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
++..++|+|||++|+..+.+.. +..+.+++|+++++++ |.|+|||++|.|+++|++|++.|+++||+++|||++|
T Consensus 456 ~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~~Gk~~vlr~----G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~ 531 (617)
T TIGR00204 456 YHYDDGPIAVRYPRGNAVGVELTPEPEKLPIGKSEVLRK----GEKILILGFGTLVPEALEVAESLNEKGIEATVVDARF 531 (617)
T ss_pred HhCCCCCEEEEEccCCcCCcccCCccccccCCceEEEEc----CCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 9754599999999987654331 2235688999999987 6899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh---------cCCceEEEe-ccCCCCCCHHHHHHHhCCCHHH
Q 004970 644 WELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEA 712 (721)
Q Consensus 644 l~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v---------~~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~ 712 (721)
++|||++++. .++.+++ . +||+||+.. .||++.+ ..+..++|+ |.|+++|++++|++++|||+++
T Consensus 532 lkPlD~e~i~--~~~~k~~-~-vvtvEE~~~~GGlGs~v~~~l~~~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~ 607 (617)
T TIGR00204 532 VKPLDEELIL--EIAASHE-K-LVTVEENAIMGGAGSAVLEFLMDQNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAG 607 (617)
T ss_pred CCcCCHHHHH--HHHhhcC-e-EEEEECCCCccChHHHHHHHHHhcCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHH
Confidence 9999998874 3444444 4 599999987 5566432 235678999 7899999999999999999999
Q ss_pred HHHHHHHhC
Q 004970 713 VITAAKEVC 721 (721)
Q Consensus 713 I~~~i~~ll 721 (721)
|+++|++++
T Consensus 608 I~~~i~~~~ 616 (617)
T TIGR00204 608 MEAKILAWL 616 (617)
T ss_pred HHHHHHHhh
Confidence 999999875
No 12
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2e-95 Score=849.24 Aligned_cols=615 Identities=22% Similarity=0.236 Sum_probs=506.8
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHH
Q 004970 81 TSTDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 154 (721)
Q Consensus 81 ~~~~~~~l~~~a~~iR~~~~~~~~~a~~------GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~ 154 (721)
-.-+.++++++++.||+++++|+.++++ ||+|+++|+++|+.+||.++|+++ |.|.+|| +|+++||++|.
T Consensus 82 ~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~---~~~~~~D-~V~skGHasp~ 157 (896)
T PRK13012 82 YPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR---DDAGGGD-LVYFQPHSAPG 157 (896)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCC---CCCCCCC-EEEECcchHHH
Confidence 3557778888999999999999999998 999999999999999999999987 4678899 59999999999
Q ss_pred HHHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcE
Q 004970 155 QYALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHY 206 (721)
Q Consensus 155 ~y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~ 206 (721)
+|+.+++.|+. +++++||+||+|++.|+|+|++.||+.++. -.+..+++
T Consensus 158 lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g---~~~~~~~~ 234 (896)
T PRK13012 158 IYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRG---LKDTSGRK 234 (896)
T ss_pred HHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccc---cccCCCCe
Confidence 99999999852 578999999999999999999999775431 11234899
Q ss_pred EEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccc--cccHHHHHhhCCCeEEEec----------
Q 004970 207 TYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF--TENVDKRFEGLGWHVIWVK---------- 274 (721)
Q Consensus 207 vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~--~~~~~~~~~a~G~~~~~v~---------- 274 (721)
|||++||||++||.+|||+.+|++++|+||++|+|+|.+++++++.... .+++.++|+++||++++|+
T Consensus 235 v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~ 314 (896)
T PRK13012 235 VWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFA 314 (896)
T ss_pred EEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhc
Confidence 9999999999999999999999999999999999999999999997543 4899999999999999986
Q ss_pred ---------------c-------------------------------------------CCCCHHHHHHHHHHHHhcCCC
Q 004970 275 ---------------N-------------------------------------------GNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 275 ---------------d-------------------------------------------G~~d~~~l~~al~~a~~~~~~ 296 (721)
| || |+.+|++|+++|++..++
T Consensus 315 ~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGH-D~~~i~~A~~~a~~~~~~ 393 (896)
T PRK13012 315 RDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGH-DPRKVYAAYAAAVRHKGQ 393 (896)
T ss_pred CCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCCC
Confidence 8 99 999999999998864578
Q ss_pred CEEEEEEEeeccCCC-CCCCCCcccC-CCCChhhHHHHHHhcCCCCC-------CCCCchhhHHHHHHHHhhhhhhHHHH
Q 004970 297 PTLIRVTTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 367 (721)
Q Consensus 297 P~lI~~~T~kg~G~~-~~~~~~~~H~-~~~~~~~~~~~~~~l~~~~~-------p~~v~~ev~~~~~~~~~~g~~~~~~~ 367 (721)
|++|.++|+||+|.+ ..++.+.+|+ .+++.++++++++.++|+.. ||++|+++...++.+.++.
T Consensus 394 PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~------- 466 (896)
T PRK13012 394 PTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARR------- 466 (896)
T ss_pred CEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHH-------
Confidence 999999999999998 4478889998 78999999999999999765 8999988776665533221
Q ss_pred HHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHh---CCCeEEEeccCCCcccc
Q 004970 368 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT---LPGLLGGSADLASSNMT 444 (721)
Q Consensus 368 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~---~p~vv~~saDl~~s~~~ 444 (721)
+.+..+. |+....... +..+.+..|...++. ..++.++||++++++|.+|++. .|+||.+++|++.++++
T Consensus 467 -~~l~g~~---P~r~~~~~~-l~~p~~~~~~~~~~~--~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm 539 (896)
T PRK13012 467 -AALGGYL---PRRRTAAPP-LPVPPLSAFAQFALG--AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGM 539 (896)
T ss_pred -HHhcCcC---Ccccccccc-cCCCchhhHHHhhcc--cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCc
Confidence 1112111 211111000 111111222222222 1345789999999999999987 99999999999866543
Q ss_pred ---------hhcc-----------cccCcccCCCCccccCCchHHHHHH--HHHHH--HhcCCCCccEEEEchhH-HHhH
Q 004970 445 ---------LLKM-----------FGDFQKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFFVF-TDYM 499 (721)
Q Consensus 445 ---------~~~~-----------~~~f~~~~~p~R~~~~GIaE~~~vg--~aaGl--A~~G~~~~Piv~~~~~F-~~r~ 499 (721)
+... +..|++ .||+|||++||+||+|++ +|+|+ +++|.|++||+.+|+.| .+|+
T Consensus 540 ~~~f~~~~i~~~~gq~y~~~d~~~~~~yke-~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~ 618 (896)
T PRK13012 540 ANLFRQVGIYSPLGQLYEPEDAGSLLYYRE-AKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRV 618 (896)
T ss_pred ccccccccccccccccccccchhHHhhhhh-CCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHH
Confidence 1111 123444 799999999999999977 66666 55675589999999999 6899
Q ss_pred HHHHHHh-hhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc-----CCCcEE
Q 004970 500 RAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-----RKRPSI 573 (721)
Q Consensus 500 ~dqir~~-a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-----~~~P~~ 573 (721)
+||||+. +++..+|++++||+|+++|++|+|||+++|++++|+||||+||.|+|+.|++.+++.++++ .+.|+|
T Consensus 619 ~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~Y 698 (896)
T PRK13012 619 GDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYY 698 (896)
T ss_pred HHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 9999997 6777779999999999999999999999999999999999999999999999999998843 268999
Q ss_pred EEEcCCCCC--CCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC-CCceEEEecCchhhhHHH
Q 004970 574 LALSRQKLP--HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQ 650 (721)
Q Consensus 574 Irl~r~~~~--~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~VI~~~sl~pld~~ 650 (721)
||+.|++++ .++.+..+.+.+|+|++.+.. .++|++||++|++|++|++|+++|+++ ||+++|||++|++|||++
T Consensus 699 IrL~r~~~~~p~~~~~~~~~i~kG~y~l~~~~--~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d 776 (896)
T PRK13012 699 LTVMNENYAQPALPEGAEEGILKGMYRLAAAA--EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRD 776 (896)
T ss_pred EEecCCCCCCCCCCccchhccccCcEEEeccC--CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHH
Confidence 999999884 444332356788999886532 257999999999999999999999999 999999999999999999
Q ss_pred HH----------------HHhhhhccc-CCceEEEEccccc---ccchhhhcCCceEEEeccCCCCCCHHHHHHHhCCCH
Q 004970 651 SD----------------AYKESVLPA-AVSARVSIEAGST---FGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITA 710 (721)
Q Consensus 651 ~~----------------~~~~~v~~~-~~~~~v~vE~~~~---~G~~~~v~~~~~~ig~d~f~~~g~~~~l~~~~gl~~ 710 (721)
.+ .|+.++++. ..+ +|+++++.. ..|.+++..+..++|+|.|+.||++++|+++||+|+
T Consensus 777 ~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p-~Va~~D~~~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~L~~~fGlda 855 (896)
T PRK13012 777 GLAAERANLLGPAEEARVPYVTQCLAGTRGP-VVAATDYVRAVPEQIRAFVPARYVTLGTDGFGRSDTRAALRRFFEVDR 855 (896)
T ss_pred HHHHHHHhhcCCCccccccHHHHhhcccCCC-eEEecchHHHHHHHHHHhCCCCeEEEeeCCCCCCCCHHHHHHHhCCCH
Confidence 66 566666654 334 488888733 457777766778899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004970 711 EAVITAAKEVC 721 (721)
Q Consensus 711 e~I~~~i~~ll 721 (721)
++|+++++++|
T Consensus 856 ~~Iv~aal~~L 866 (896)
T PRK13012 856 HSIVLAALKAL 866 (896)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 13
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4e-95 Score=841.03 Aligned_cols=537 Identities=24% Similarity=0.334 Sum_probs=448.8
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCC
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~G 149 (721)
..++-.++|++.++..+ |+++|++||.++++++.++ +||+|++||++|++++||+. ||. +|||||||+|
T Consensus 9 l~~i~~p~dl~~l~~~~-l~~~a~~iR~~ii~~~~~~-~GH~g~~ls~vel~~aL~~~---~~~------prDr~i~s~G 77 (641)
T PRK12571 9 LDRIKGPADLRALSDAE-LEQLADELRAEVISAVSET-GGHLGSSLGVVELTVALHAV---FNT------PKDKLVWDVG 77 (641)
T ss_pred hhhcCCHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHh-CCCcCCCchHHHHHHHHHHh---cCC------CCCcEEEECc
Confidence 45677788999998766 9999999999999999985 79999999999999999955 552 5999999999
Q ss_pred cchHHHHHHHHHhCCC-------------Cc----c-----cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 150 HGCMLQYALLHLAGYD-------------SV----Q-----VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 150 h~~~~~y~~l~l~G~~-------------gi----e-----~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|++ |+++.++|+. |. | +..|+-|.+++.|+|+|+|.++.+ .+++|
T Consensus 78 H~~---Y~~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~----------~~~~v 144 (641)
T PRK12571 78 HQC---YPHKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQ----------PDGDV 144 (641)
T ss_pred hHH---HHHHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhC----------CCCeE
Confidence 999 7777888852 11 2 235555777999999999998664 27899
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc--------ccccccH--------------------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE--------IAFTENV-------------------- 259 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~--------~~~~~~~-------------------- 259 (721)
||++|||+++||++||++++|+++++ |+++|+|||+++++++++ ....+.+
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRD 223 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHH
Confidence 99999999999999999999999997 899999999999999885 1112111
Q ss_pred ---------------HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCCCC-CCcccCCC
Q 004970 260 ---------------DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKAN-SYSVHGSA 323 (721)
Q Consensus 260 ---------------~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~ 323 (721)
..+|++|||+|+..+||| |+++|.+||+++++..++|++||++|+||+|++++++ ..+|||.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGh-d~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~ 302 (641)
T PRK12571 224 GARRARELVTGMIGGGTLFEELGFTYVGPIDGH-DMEALLSVLRAARARADGPVLVHVVTEKGRGYAPAEADEDKYHAVG 302 (641)
T ss_pred HHHHHHHhhhhccchhhHHHHcCCEEECccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEecCccCcchhhcCCCcccCCC
Confidence 479999999999433999 9999999999998634789999999999999998865 57999865
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCC
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPT 403 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~ 403 (721)
. |.+.. +... + +
T Consensus 303 ~------------------f~~~~------------~~~~------------~-----------------~--------- 314 (641)
T PRK12571 303 K------------------FDVVT------------GLQK------------K-----------------S--------- 314 (641)
T ss_pred C------------------cCCCC------------Cccc------------C-----------------C---------
Confidence 1 11100 0000 0 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCC
Q 004970 404 YTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 483 (721)
Q Consensus 404 ~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~ 483 (721)
.....++|++++++|.+++++||+++++++|+.++.+ +.+|++ +||+||||+||+||+|+|+|+|||+.|
T Consensus 315 ---~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~-----~~~f~~-~~p~R~id~GIaE~~mvg~AaGlA~~G- 384 (641)
T PRK12571 315 ---APSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTG-----LDKLQK-RFPNRVFDVGIAEQHAVTFAAGLAAAG- 384 (641)
T ss_pred ---CccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC-----hHHHHH-hCCCcccccCccHHHHHHHHHHHHHCC-
Confidence 0002367888999999999999999999999966543 356866 799999999999999999999999988
Q ss_pred CCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHH
Q 004970 484 GLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 562 (721)
Q Consensus 484 ~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~ 562 (721)
++||+++|++|++|++||||+ +|++++||+|+++++|+ .|+||+|||+++|+++||+||||+|++|+|+.|++++++
T Consensus 385 -~~P~v~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~-~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 462 (641)
T PRK12571 385 -LKPFCAVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGL-VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLR 462 (641)
T ss_pred -CEEEEEehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 699999999999999999976 69999999999988888 599999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEcCCCCCCCC-CCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEec
Q 004970 563 VAVANRKRPSILALSRQKLPHLA-GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 563 ~a~~~~~~P~~Irl~r~~~~~~~-~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
+|++..++|+|||++|+..+... ....+.+++|+..++++ |+|++||++|+|+++|++|++.|+++||+++|||+
T Consensus 463 ~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~gk~~vlr~----G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~ 538 (641)
T PRK12571 463 TAAAHDDGPIAVRFPRGEGVGVEIPAEGTILGIGKGRVPRE----GPDVAILSVGAHLHECLDAADLLEAEGISVTVADP 538 (641)
T ss_pred HHHhCCCCcEEEEEecCcCCccccCCCCccccCceeEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99974489999999998765322 11224477888888876 68999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHhhhhcccCCceEEEEccc-ccccchhhh------------cCCceEEEe-ccCCCCCCHHHHHHHhC
Q 004970 642 VSWELFDEQSDAYKESVLPAAVSARVSIEAG-STFGWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFG 707 (721)
Q Consensus 642 ~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~-~~~G~~~~v------------~~~~~~ig~-d~f~~~g~~~~l~~~~g 707 (721)
++++|||.+.+ .++.+++ .+ +++||+ ...||++.+ ..+..++|+ |.|+++|+.++++++||
T Consensus 539 ~~lkPlD~~~i---~sv~k~~-~v-vvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~g 613 (641)
T PRK12571 539 RFVKPLDEALT---DLLVRHH-IV-VIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAG 613 (641)
T ss_pred CcCCCcCHHHH---HHHhhhC-CE-EEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhC
Confidence 99999999765 4677776 44 556665 457787643 134568999 89999999999999999
Q ss_pred CCHHHHHHHHHHhC
Q 004970 708 ITAEAVITAAKEVC 721 (721)
Q Consensus 708 l~~e~I~~~i~~ll 721 (721)
||+++|+++|++++
T Consensus 614 l~~~~I~~~i~~~l 627 (641)
T PRK12571 614 LTAPDIAAAVTGAL 627 (641)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998864
No 14
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.8e-95 Score=839.40 Aligned_cols=534 Identities=24% Similarity=0.325 Sum_probs=456.3
Q ss_pred hhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCc
Q 004970 71 IRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh 150 (721)
..+..+++++.|+..+ |++++++||.++++|+.+ ++||+|++||++|++++||+. +|+ +|||||+|+||
T Consensus 8 ~~~~~~~~~~~~~~~~-l~~~a~~iR~~~~~~~~~-~~gH~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~GH 76 (580)
T PRK05444 8 DTINSPADLKKLSEEE-LPQLADEIREFLIDVVSK-TGGHLGSNLGVVELTVALHYV---FDT------PKDRIIWDVGH 76 (580)
T ss_pred hccCCHHHHhcCCHHH-HHHHHHHHHHHHHHHHHh-cCCCcCCCccHHHHHHHHHHh---cCC------CCccEEEeccH
Confidence 4556778899898777 999999999999999988 799999999999999999965 554 89999999999
Q ss_pred chHHHHHHHHHhCCC----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEE
Q 004970 151 GCMLQYALLHLAGYD----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTY 208 (721)
Q Consensus 151 ~~~~~y~~l~l~G~~----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv 208 (721)
++ |+++++.|+. |+++++|++|+|+|.|+|+|+|.++++. .+++||
T Consensus 77 ~~---y~~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~---------~~~~v~ 144 (580)
T PRK05444 77 QA---YPHKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGG---------EDRKVV 144 (580)
T ss_pred HH---HHHHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCC---------CCCeEE
Confidence 99 6666666641 7789999999999999999999987621 278999
Q ss_pred EEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc----ccccHHHHHhhCCCeEEEeccCCCCHHHHH
Q 004970 209 VILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----FTENVDKRFEGLGWHVIWVKNGNTGYDDIR 284 (721)
Q Consensus 209 ~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~ 284 (721)
|++|||+++||++|||+++|++++ .|+++|+|||+|+++++++.. ...++.++|++|||+++.++||| |++++.
T Consensus 145 ~i~GDG~l~eG~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~-d~~~l~ 222 (580)
T PRK05444 145 AVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGH-DLDALI 222 (580)
T ss_pred EEEcccccccCHHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCC-CHHHHH
Confidence 999999999999999999999999 589999999999999887532 23677889999999999534999 999999
Q ss_pred HHHHHHHhcCCCCEEEEEEEeeccCCCCCC-CCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004970 285 AAIKEAKAVTDKPTLIRVTTTIGFGSPNKA-NSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 363 (721)
Q Consensus 285 ~al~~a~~~~~~P~lI~~~T~kg~G~~~~~-~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~ 363 (721)
++++++++ .++|++|+++|+||+|+++++ ++.+||+.++..++. + ..
T Consensus 223 ~al~~a~~-~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~-------~-----------------------~~- 270 (580)
T PRK05444 223 ETLKNAKD-LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPET-------G-----------------------EQ- 270 (580)
T ss_pred HHHHHHHh-CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCccc-------C-----------------------Cc-
Confidence 99999987 689999999999999999885 467899865322110 0 00
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCccc
Q 004970 364 EAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNM 443 (721)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~ 443 (721)
.. + . .....++|++++++|.++++++|+++++++|+.++.+
T Consensus 271 -------------~~---------------~--------~---~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~ 311 (580)
T PRK05444 271 -------------PK---------------S--------S---KPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTG 311 (580)
T ss_pred -------------cc---------------c--------C---CCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCC
Confidence 00 0 0 0012568999999999999999999999999965543
Q ss_pred chhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCc
Q 004970 444 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSI 522 (721)
Q Consensus 444 ~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~ 522 (721)
+.+|++ +||+||||+||+||+|+|+|+|||+.| ++||+++|++|++|++||||+ .|++++||+++++|+|+
T Consensus 312 -----~~~f~~-~~p~R~i~~GIaE~~mvg~A~GlA~~G--~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~ 383 (580)
T PRK05444 312 -----LVKFSK-RFPDRYFDVGIAEQHAVTFAAGLATEG--LKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL 383 (580)
T ss_pred -----HHHHHH-HhhhhccCCChHHHHHHHHHHHHHHCC--CeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc
Confidence 245866 799999999999999999999999999 699999999999999999998 59999999999999998
Q ss_pred ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecC
Q 004970 523 GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 602 (721)
Q Consensus 523 ~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~ 602 (721)
.|+||+|||+++|+++||+|||++|++|+|+.|+++++++++++.++|+|||++|+..+..+.+..+.+++|++.++++
T Consensus 384 -~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~Gk~~vl~~ 462 (580)
T PRK05444 384 -VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVELPELEPLPIGKGEVLRE 462 (580)
T ss_pred -CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCCCCcccccCCceEEEEc
Confidence 5789999999999999999999999999999999999999996558999999999987654322235688999988886
Q ss_pred CCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh
Q 004970 603 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV 681 (721)
Q Consensus 603 ~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v 681 (721)
|+|+|||++|+||++|++|++.|+ +++|||++|++|||++.+. +.+.+++ . +|++||+.. .||++.+
T Consensus 463 ----G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~--~~~~~~~-~-vv~vEe~~~~gG~g~~v 530 (580)
T PRK05444 463 ----GEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLL--ELAAKHD-L-VVTVEEGAIMGGFGSAV 530 (580)
T ss_pred ----CCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHH--HHHhcCC-e-EEEEECCCCCCCHHHHH
Confidence 689999999999999999999995 8999999999999998764 3444443 4 599999988 5787644
Q ss_pred ---------cCCceEEEe-ccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 682 ---------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 682 ---------~~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
..+..++|+ |.|+++|++++|++++|||+++|+++|++++
T Consensus 531 a~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 580 (580)
T PRK05444 531 LEFLADHGLDVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILELL 580 (580)
T ss_pred HHHHHhhcCCCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 234568999 7899999999999999999999999999875
No 15
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.3e-95 Score=825.72 Aligned_cols=519 Identities=19% Similarity=0.205 Sum_probs=446.2
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHH-HhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcC
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAV-EKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~-~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~ 148 (721)
.-++-.+++++.++..| |++||+|||..+++.+ ++ ++||+|++||++|+++|||++ ||+ |+|+||||+
T Consensus 79 L~~i~~P~dlk~L~~~e-L~~La~EiR~~li~~v~s~-~GGHl~snLGvVELTvALH~V---Fd~------p~DkiiwDv 147 (701)
T PLN02225 79 LDSIETPLQLKNLSVKE-LKLLADEIRTELHSVLWKK-TQKSMNPSFAAIELTLALHYV---FRA------PVDNILWDA 147 (701)
T ss_pred hhhcCCHHHHhhCCHHH-HHHHHHHHHHHHHHHhhcc-cCCCcCCCccHHHHHHHHHHH---hCC------CCCceeecc
Confidence 55778899999999888 9999999999999999 67 899999999999999999999 886 999999999
Q ss_pred CcchHHHHHHHHHhCCC---------Cc------------ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 149 GHGCMLQYALLHLAGYD---------SV------------QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 149 Gh~~~~~y~~l~l~G~~---------gi------------e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|||+ |.++.|+|+. |+ -|.+||.+++||+|+|||.|+.+++. +++|
T Consensus 148 gHQ~---Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~----------~~~v 214 (701)
T PLN02225 148 VEQT---YAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGK----------RDRV 214 (701)
T ss_pred cccc---chhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC----------CCcE
Confidence 9999 9999999963 22 27899999999999999999998763 7789
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccc--------cccc-------------------------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD--------TEIA------------------------- 254 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~--------~~~~------------------------- 254 (721)
|++||||+++.||+|||||.|+..+ .|+|+|+|||+++|+.+ +...
T Consensus 215 vaVIGDGaltgGma~EaLN~~g~~~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~ 293 (701)
T PLN02225 215 VAVIDNATITAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTK 293 (701)
T ss_pred EEEEcCcchhhhhHHHHHhhhhccC-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999987 48999999999999998 3200
Q ss_pred -cc-------cc--------H---H-HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCC--CCEEEEEEEeeccCCCC
Q 004970 255 -FT-------EN--------V---D-KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTD--KPTLIRVTTTIGFGSPN 312 (721)
Q Consensus 255 -~~-------~~--------~---~-~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~--~P~lI~~~T~kg~G~~~ 312 (721)
.+ .. + . .+|+++|++|+.++||| |+++|.++|+++++ .+ +|++||+.|.||+...
T Consensus 294 ~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGH-di~~Li~~l~~~k~-~~~~~PvlvHv~T~KGkd~~- 370 (701)
T PLN02225 294 RIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGH-NIEDLVCVLREVSS-LDSMGPVLVHVITEENRDAE- 370 (701)
T ss_pred hCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCC-CHHHHHHHHHHHHc-CCCCCCEEEEEEecCCCCCC-
Confidence 00 00 0 1 47899999999999999 99999999999997 54 9999999999997110
Q ss_pred CCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCC
Q 004970 313 KANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 392 (721)
Q Consensus 313 ~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 392 (721)
. | . +.
T Consensus 371 ---------------t--------g---~-~~------------------------------------------------ 375 (701)
T PLN02225 371 ---------------T--------G---K-NI------------------------------------------------ 375 (701)
T ss_pred ---------------C--------C---C-cC------------------------------------------------
Confidence 0 0 0 00
Q ss_pred CCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHH
Q 004970 393 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMG 472 (721)
Q Consensus 393 ~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~v 472 (721)
......+++++++++|.+++++||+++++++|+..+++ +..|++ +||+||||+||||||||
T Consensus 376 -------------~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg-----l~~f~~-~fPdRffDvGIAEQhaV 436 (701)
T PLN02225 376 -------------MVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS-----LITFQE-RFPDRFFNVGMAEQHAV 436 (701)
T ss_pred -------------CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc-----HHHHHH-HccccccccCccHHHHH
Confidence 00012467888999999999999999999999965443 356877 79999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEee
Q 004970 473 AICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRP 551 (721)
Q Consensus 473 g~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P 551 (721)
++|+|||+.| ++|||++|++|++|+||||++ +|++++||+|++.++|+ +|+||+|||+++|+++||+||||+|++|
T Consensus 437 t~AAGLA~~G--~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~IPnm~V~aP 513 (701)
T PLN02225 437 TFSAGLSSGG--LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSLPNMIAMAP 513 (701)
T ss_pred HHHHHHHHCC--CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCcc-CCCCCccccccHHHHHHhcCCCCEEEee
Confidence 9999999999 699999999999999999887 59999999999988877 5789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHH
Q 004970 552 ADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEEL 629 (721)
Q Consensus 552 ~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~--~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L 629 (721)
+|+.|+..||++++...++|+|||+||+..+... .+..+.+++|+++++++ |.|++||++|+|+++|++|++.|
T Consensus 514 sD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK~~vlre----G~dvtIia~G~mv~~Al~AA~~L 589 (701)
T PLN02225 514 ADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVE----GQDVALLGYGAMVQNCLHAHSLL 589 (701)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecccccCCCCcCCCCCccccCcceEEEEe----CCCEEEEeccHHHHHHHHHHHHH
Confidence 9999999999999865679999999998765432 11124678899988886 68999999999999999999999
Q ss_pred HhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhc------------CCceEEEe-ccCCCC
Q 004970 630 RKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGKAIGI-DRFGAS 696 (721)
Q Consensus 630 ~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~------------~~~~~ig~-d~f~~~ 696 (721)
+++||+++|||+++++|||++.+. +.+.++ +.+||+|||...||++.+. .+..++|+ |+|+++
T Consensus 590 ~~~GI~vtVIdlr~ikPLD~e~I~--~~~~k~--~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~ 665 (701)
T PLN02225 590 SKLGLNVTVADARFCKPLDIKLVR--DLCQNH--KFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEE 665 (701)
T ss_pred HhcCCCEEEEecCCCCCCCHHHHH--HHHhhc--CeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCC
Confidence 999999999999999999999874 334333 3469999999877875431 24567999 899999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 697 APAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|++++|||+++|+++|++++
T Consensus 666 G~~~~ll~~~GLdae~I~~~i~~~l 690 (701)
T PLN02225 666 ASPREQLALAGLTGHHIAATALSLL 690 (701)
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 16
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=9.1e-95 Score=824.92 Aligned_cols=499 Identities=22% Similarity=0.290 Sum_probs=419.6
Q ss_pred hhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCc
Q 004970 71 IRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150 (721)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh 150 (721)
-.+-.+++.+.++..+ |+++|++||+.+++++.+. +||+|++||++||+++||+. ||. |+||||||+||
T Consensus 68 ~~i~~p~~~k~l~~~~-L~~la~eiR~~ii~~~~~~-~GHlgssLs~vEl~~aL~~v---f~~------p~DriI~s~GH 136 (641)
T PLN02234 68 DTINHPMHMKNLSIKE-LKVLSDELRSDVIFNVSKT-GGHLGSNLGVVELTVALHYI---FNT------PHDKILWDVGH 136 (641)
T ss_pred hhcCCHHHHhhCCHHH-HHHHHHHHHHHHHHHHhhc-CCCccccchHHHHHHHHHHh---cCC------CCCeEEEecch
Confidence 3555667777676666 9999999999999999985 99999999999999999975 442 58999999999
Q ss_pred chHHHHHHHHHhCC-------------C------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEE
Q 004970 151 GCMLQYALLHLAGY-------------D------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVIL 211 (721)
Q Consensus 151 ~~~~~y~~l~l~G~-------------~------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~vi 211 (721)
++|.+|.++...+. + ++++++||+|+|||+|+|||+|.++++ .+++|||++
T Consensus 137 qaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g----------~~~~v~~vi 206 (641)
T PLN02234 137 QSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKG----------MNNSVVSVI 206 (641)
T ss_pred hHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCC----------CCCeEEEEE
Confidence 99777777654441 1 667999999999999999999999775 278999999
Q ss_pred CCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc------cccccccc-cc---------------ccHHHHHhhCCCe
Q 004970 212 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS------IDGDTEIA-FT---------------ENVDKRFEGLGWH 269 (721)
Q Consensus 212 GDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~------i~~~~~~~-~~---------------~~~~~~~~a~G~~ 269 (721)
|||+++||++|||+++|++.+ +|+++|+|||+++ +++.+... .. ++...+|++|||+
T Consensus 207 GDGel~eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~ 285 (641)
T PLN02234 207 GDGAMTAGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFH 285 (641)
T ss_pred ccchhhhHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCE
Confidence 999999999999999999665 8999999999994 55555421 11 3678899999999
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhcC-CCCEEEEEEEeeccCCCCCCC-CCcccCCC-CChhhHHHHHHhcCCCCCCCCCc
Q 004970 270 VIWVKNGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIGFGSPNKAN-SYSVHGSA-LGAKEVDATRKNLGWPYEPFHVP 346 (721)
Q Consensus 270 ~~~v~dG~~d~~~l~~al~~a~~~~-~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~-~~~~~~~~~~~~l~~~~~p~~v~ 346 (721)
|+..+||| |+++|.++|++++... ++|++||++|+||+|++++|+ ..+||+.. ++.+..+ +.
T Consensus 286 ~~g~vDGH-d~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~-----------~~--- 350 (641)
T PLN02234 286 YVGPVDGH-NIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGK-----------QF--- 350 (641)
T ss_pred EEeeECCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccc-----------cc---
Confidence 99444999 9999999999987632 589999999999999999976 67899753 2111000 00
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 004970 347 EDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAK 426 (721)
Q Consensus 347 ~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~ 426 (721)
. ......+++++++++|.++++
T Consensus 351 -------------------------------------------~---------------~~~~~~sy~~af~~aL~e~a~ 372 (641)
T PLN02234 351 -------------------------------------------K---------------NISKTQSYTSCFVEALIAEAE 372 (641)
T ss_pred -------------------------------------------c---------------CCCCCCCHHHHHHHHHHHHHH
Confidence 0 000124678899999999999
Q ss_pred hCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHH-
Q 004970 427 TLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI- 505 (721)
Q Consensus 427 ~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~- 505 (721)
+||+++++++|++++++ +..|++ +||+||||+|||||+|+|+|+|||+.| ++||+++|++|++|++|||++
T Consensus 373 ~D~~Iv~l~adm~ggt~-----~~~f~~-~fPdR~fdvGIAEq~~Vg~AaGLA~~G--~rPvv~~fs~Fl~RA~DQI~~d 444 (641)
T PLN02234 373 ADKDIVAIHAAMGGGTM-----LNLFES-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCTIYSSFMQRAYDQVVHD 444 (641)
T ss_pred HCcCEEEEECCCCCCcc-----hHHHHH-HccccccCCCcCHHHHHHHHHHHHHCC--CeEEEEehHHHHHHHHHHHHHH
Confidence 99999999999966443 356876 799999999999999999999999999 699999999999999999876
Q ss_pred hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC
Q 004970 506 SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 585 (721)
Q Consensus 506 ~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~ 585 (721)
+|++++||+|++++.|+ +|+||+|||+++|++++|+||||+|++|+|+.|++.|+++++...++|+|||++|+..+...
T Consensus 445 va~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~ 523 (641)
T PLN02234 445 VDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVS 523 (641)
T ss_pred HhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccc
Confidence 59999999999988887 58899999999999999999999999999999999999998865579999999998764322
Q ss_pred --C-CccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccC
Q 004970 586 --G-TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAA 662 (721)
Q Consensus 586 --~-~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~ 662 (721)
. .....+++|+++++++ |.|+|||++|+||++|++|+++|+++||+++|||++|++|||.+.+ .++.+++
T Consensus 524 ~~~~~~~~~~~iGk~~vlre----G~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i---~sl~k~~ 596 (641)
T PLN02234 524 LPPGNKGVPLQIGRGRILRD----GERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALI---RSLAKSH 596 (641)
T ss_pred cCCCCccccccCceEEEEEe----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH---HHHHHhC
Confidence 1 1123578899888887 6899999999999999999999999999999999999999999875 4677776
Q ss_pred CceEEEEcccccccchhhh
Q 004970 663 VSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 663 ~~~~v~vE~~~~~G~~~~v 681 (721)
. .+||+||+...|+++.+
T Consensus 597 ~-~vVt~Ee~~~GG~Gs~V 614 (641)
T PLN02234 597 E-VLITVEEGSIGGFGSHV 614 (641)
T ss_pred C-EEEEECCCCCCcHHHHH
Confidence 4 45999999998888755
No 17
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.9e-94 Score=827.22 Aligned_cols=532 Identities=21% Similarity=0.287 Sum_probs=452.3
Q ss_pred hhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcc
Q 004970 72 RAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHG 151 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~ 151 (721)
++..+++++.++..+ |+++|++||..+++.+.+ .+||+++++|++|++++||+. ||+ ++|+||||+||+
T Consensus 5 ~~~~p~d~~~l~~~~-l~~l~~~ir~~~~~~~~~-~~Gh~~~~lg~vel~~al~~~---f~~------~~D~ii~d~ghr 73 (581)
T PRK12315 5 KINSPADLKKLSLDE-LEQLASEIRTALLEKDSA-HGGHVGPNLGVVELTIALHYV---FNS------PKDKIVWDVSHQ 73 (581)
T ss_pred hcCCHHHHhhCCHHH-HHHHHHHHHHHHHHHHHh-cCCCcCcchhHHHHHHHHHhh---cCC------CCCcEEEecCCc
Confidence 345678899899666 999999999999999976 899999999999999999877 775 799999999999
Q ss_pred hHHHHHHHHHhCCC-------------C----c-----ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEE
Q 004970 152 CMLQYALLHLAGYD-------------S----V-----QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 209 (721)
Q Consensus 152 ~~~~y~~l~l~G~~-------------g----i-----e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~ 209 (721)
+ |++..++|.+ | . -+.+|+.|.++|.|+|+|+|.++++. +++|||
T Consensus 74 ~---~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~----------~~~vv~ 140 (581)
T PRK12315 74 S---YPHKMLTGRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGE----------KGNIIA 140 (581)
T ss_pred h---HHHHHHcCCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCC----------CCeEEE
Confidence 9 6676667753 1 1 14789999999999999999997652 789999
Q ss_pred EECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc----------cccccHHHHHhhCCCeEEEeccCCCC
Q 004970 210 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI----------AFTENVDKRFEGLGWHVIWVKNGNTG 279 (721)
Q Consensus 210 viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d 279 (721)
++|||+++||++|||||+|+.|++ |+++|+|||+|++++++.. ....++.++|++|||+++.|+||| |
T Consensus 141 ~iGDG~~~eG~~~EAln~A~~~k~-~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~-D 218 (581)
T PRK12315 141 VIGDGSLSGGLALEGLNNAAELKS-NLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGN-D 218 (581)
T ss_pred EECchhhhcchHHHHHHHHHhhCC-CEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCC-C
Confidence 999999999999999999999996 9999999999999988741 123456789999999999988999 9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCC-CCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHh
Q 004970 280 YDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNK-ANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 358 (721)
Q Consensus 280 ~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~-~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~ 358 (721)
++++.++++++++ .++|++||++|+||+|++++ ++..+||+.. ||...+
T Consensus 219 ~~~l~~a~~~a~~-~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~------------------~f~~~~----------- 268 (581)
T PRK12315 219 IESLIEAFKEVKD-IDHPIVLHIHTLKGKGYQPAEENKEAFHWHM------------------PFDLET----------- 268 (581)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEEeecCCCCChhhcCHHhcCCCC------------------CCCccc-----------
Confidence 9999999999987 78999999999999999764 6667888742 111100
Q ss_pred hhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccC
Q 004970 359 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADL 438 (721)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl 438 (721)
+.. .++ . ...+++++++++|.+++++||+++++++|+
T Consensus 269 -~~~------------------------------~~~-------~-----~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~ 305 (581)
T PRK12315 269 -GQS------------------------------KVP-------A-----SGESYSSVTLDYLLKKIKEGKPVVAINAAI 305 (581)
T ss_pred -Ccc------------------------------cCC-------C-----CCcCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 000 000 0 023678899999999999999999999998
Q ss_pred CCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEE
Q 004970 439 ASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVM 517 (721)
Q Consensus 439 ~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~ 517 (721)
.++.+ +.+|++ +||+||||+||+||+|+++|+|||+.| ++||+++|++|++|++|||++ .|++++||+|++
T Consensus 306 ~~~~~-----~~~f~~-~fP~R~id~GIaEq~~v~~AaGlA~~G--~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~ 377 (581)
T PRK12315 306 PGVFG-----LKEFRK-KYPDQYVDVGIAEQESVAFASGIAANG--ARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIV 377 (581)
T ss_pred ccccC-----cHHHHH-hccccccCCCchHHHHHHHHHHHHHCc--CeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 66653 356876 799999999999999999999999999 699999999999999999987 499999999999
Q ss_pred ecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccE
Q 004970 518 THDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAY 597 (721)
Q Consensus 518 t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~ 597 (721)
+++|++ + ||+|||++||+++||+||||+|++|+|+.|++.+++++++..++|+|||++|+..+...... ..+..|++
T Consensus 378 ~~~g~~-~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~~~-~~~~~~k~ 454 (581)
T PRK12315 378 FGGSIS-G-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPTVD-TDYSTLKY 454 (581)
T ss_pred ECCccc-C-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCCCc-cCcccceE
Confidence 988885 4 99999999999999999999999999999999999999974479999999999877543322 23456788
Q ss_pred EEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC-CCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccc-
Q 004970 598 IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF- 675 (721)
Q Consensus 598 ~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~- 675 (721)
.++++ |.|+|||++|+|+++|++|++.|+++ ||+++|||++|++|||++.+. ++.++.. .+||+|||...
T Consensus 455 ~v~~~----g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~---~~~~~~~-~vvtvEe~~~~G 526 (581)
T PRK12315 455 EVTKA----GEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLE---KLKEDHE-LVVTLEDGILDG 526 (581)
T ss_pred EEEec----CCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHH---HHHhhCC-EEEEEcCCCcCC
Confidence 88887 68999999999999999999999988 999999999999999999764 4555553 45999999874
Q ss_pred cchhhh----cC---CceEEEe-ccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 676 GWEKIV----GS---KGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 676 G~~~~v----~~---~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
||++.+ .. +..++|+ |.|+.+|++++|++++|||+++|+++|++++
T Consensus 527 G~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 527 GFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 576543 22 3457999 6899999999999999999999999999875
No 18
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=3e-93 Score=827.16 Aligned_cols=598 Identities=23% Similarity=0.260 Sum_probs=483.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhC------CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~~a~------~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~ 155 (721)
..+.++++++++.||+++++|+.+++ +||+|+++|++||+++||.++|+.+ +.|.+|| ||+|+||++|.+
T Consensus 69 pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~---~~~~~rD-~VlskGHasp~l 144 (889)
T TIGR03186 69 PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA---GDASGGD-LVYFQPHSAPGV 144 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC---CCCCCCC-EEEECCchHHHH
Confidence 45778899999999999999999999 6999999999999999999998853 3477888 699999999999
Q ss_pred HHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 156 YALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 156 y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|+.+++.|+. ++|++||+||+|++.|+|+|++.|+++++|.+. ..+++|
T Consensus 145 YA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~---~~~~rV 221 (889)
T TIGR03186 145 YARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLAR---TEGRKV 221 (889)
T ss_pred HHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccC---CCCceE
Confidence 9999999962 478999999999999999999999888764322 247999
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEEEec-----------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVK----------- 274 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~----------- 274 (721)
||++||||++||.+|||+.+|++++|+||++|+|+|++++++++.. ...+++.++|++|||++++|+
T Consensus 222 y~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~ 301 (889)
T TIGR03186 222 WGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFAR 301 (889)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhcc
Confidence 9999999999999999999999999999999999999999999974 336899999999999999985
Q ss_pred ---------------------------------------------------------cCCCCHHHHHHHHHHHHhcCCCC
Q 004970 275 ---------------------------------------------------------NGNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 275 ---------------------------------------------------------dG~~d~~~l~~al~~a~~~~~~P 297 (721)
+|| |+++|++|+++|++..++|
T Consensus 302 d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGH-D~~~i~~A~~~A~~~~~~P 380 (889)
T TIGR03186 302 DATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGH-DARKLYAAYDRAVRHEGRP 380 (889)
T ss_pred ccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCCCC
Confidence 699 9999999999998745799
Q ss_pred EEEEEEEeeccCCCCCC-CCCcccC-CCCChhhHHHHHHhcCCCC-------CCCCCchhhHHHHHHHHhhhhhhHHHHH
Q 004970 298 TLIRVTTTIGFGSPNKA-NSYSVHG-SALGAKEVDATRKNLGWPY-------EPFHVPEDVKKHWSRHVAEGATLEAEWN 368 (721)
Q Consensus 298 ~lI~~~T~kg~G~~~~~-~~~~~H~-~~~~~~~~~~~~~~l~~~~-------~p~~v~~ev~~~~~~~~~~g~~~~~~~~ 368 (721)
++|.++|+||+|.+.++ +.+.+|+ .+++.++++.++++++++. .||+.|.+- ..+.+
T Consensus 381 TvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~--------------s~~~~ 446 (889)
T TIGR03186 381 TVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDED--------------SAEMR 446 (889)
T ss_pred EEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCC--------------CHHHH
Confidence 99999999999997764 4678899 7899999999999999843 233322110 00100
Q ss_pred HHHHHHHhhChHHHHHHHHHhcCCCCCccc-----ccCC------CCCC--CCcchhHHHHHHHHHHHHHHh---CCCeE
Q 004970 369 AKFAEYEKKYPEEAAEFKSISSGQLPAGWE-----KALP------TYTP--ESPAEATRNLSQTCLNALAKT---LPGLL 432 (721)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~-----~~~p------~~~~--~~~~~~~r~a~~~~L~~l~~~---~p~vv 432 (721)
. +.+. ...+.+.+|.... -.+| .+.. .++.++|+.+|+++|..|++. .++||
T Consensus 447 ~-l~~~-----------r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV 514 (889)
T TIGR03186 447 Y-LHAR-----------RAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIV 514 (889)
T ss_pred H-HHHH-----------HHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEE
Confidence 0 0000 0112222221110 0122 2221 336789999999998877764 67799
Q ss_pred EEeccCCCcccch--hcc------------------cccCcccCCCCccccCCchHHHHHH--HHHHHHhc--CCCCccE
Q 004970 433 GGSADLASSNMTL--LKM------------------FGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPY 488 (721)
Q Consensus 433 ~~saDl~~s~~~~--~~~------------------~~~f~~~~~p~R~~~~GIaE~~~vg--~aaGlA~~--G~~~~Pi 488 (721)
.+++|+..+++.. ++. +..|++ .+|+|||++||+||+|++ +|+|+|+. |.|++||
T Consensus 515 ~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e-~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf 593 (889)
T TIGR03186 515 PIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYRE-DTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPF 593 (889)
T ss_pred EeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhh-cCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEE
Confidence 9999998887431 111 223444 799999999999999999 99997665 4447999
Q ss_pred EEEchhHH-HhHHHHHHHhhhcCCcEEEEEecCCc-ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH
Q 004970 489 CATFFVFT-DYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA 566 (721)
Q Consensus 489 v~~~~~F~-~r~~dqir~~a~~~~pV~~v~t~~g~-~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~ 566 (721)
+++|+.|. +|++||||+.|+++.+|+++++++|. ++|++|+|||+++|++++|+||||+||.|+|+.|++.+++.+++
T Consensus 594 ~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~ 673 (889)
T TIGR03186 594 YIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMR 673 (889)
T ss_pred EEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 99999995 89999999999999999999999999 69999999999999999999999999999999999999998775
Q ss_pred ----c-CCCcEEEEEcCCCC--CCCCCCccccccC----ccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC-CC
Q 004970 567 ----N-RKRPSILALSRQKL--PHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GK 634 (721)
Q Consensus 567 ----~-~~~P~~Irl~r~~~--~~~~~~~~~~~~~----G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi 634 (721)
. .++|+|||+.|.+. |..+.+....+.. |.|++.+.. ..|.||+||++|.|+++|++|++.|+++ ||
T Consensus 674 rm~~~~~~gp~YlRl~r~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~-~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI 752 (889)
T TIGR03186 674 EMLERQRDEFYYLTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAA-LAAARVQLLGSGAILGEVQAAARLLRDDWGI 752 (889)
T ss_pred HHHhcCCCceEEEEeCCCCCCCCCcCCCcccchhcchhheeeEeeccC-CCCCCEEEEeccHHHHHHHHHHHHHhhhhCC
Confidence 1 36899999999977 4444331112333 337776421 0167999999999999999999999987 99
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccc---cc-ccchh---------------------hhcCCceEEE
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG---ST-FGWEK---------------------IVGSKGKAIG 689 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~---~~-~G~~~---------------------~v~~~~~~ig 689 (721)
+++|||++|++|||++.+. +.+.+ . ++++|++ +. .|++. ++..+..++|
T Consensus 753 ~a~V~sv~SikpLdrd~i~----a~r~~-~-l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~p~~~~~LG 826 (889)
T TIGR03186 753 DAAVWSVTSFTELARDGRA----AERAQ-R-LGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLG 826 (889)
T ss_pred CeEEEECCCCCHhHHHHHH----HHHhC-C-cccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhCCCCEEEec
Confidence 9999999999999999874 22223 2 4889997 33 34443 2234567899
Q ss_pred eccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 690 IDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 690 ~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|.|+.+|++++|+++||||+++|+.+++++|
T Consensus 827 ~D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L 858 (889)
T TIGR03186 827 TDGFGRSDTRAALRAFFEVDRASIVIAALQAL 858 (889)
T ss_pred cCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 19
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.5e-89 Score=789.75 Aligned_cols=605 Identities=23% Similarity=0.246 Sum_probs=479.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~~a~~------GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~ 155 (721)
..+.++.+++++.||++++.||.+|++ ||+|+++|+++|+.+||.++|+. |++| .++| ||+++||++|.+
T Consensus 75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~-~~~~--~~~D-~V~skGHasp~l 150 (891)
T PRK09405 75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRA-PNEP--HGGD-LVFFQGHASPGI 150 (891)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCC-CCCC--CCCC-EEEECchHHHHH
Confidence 456778889999999999999999987 99999999999999999999884 4666 3677 899999999999
Q ss_pred HHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 156 YALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 156 y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|+.+++.|+. +++++||+||+|++.|+|+|++.||+.++ .-.+..+++|
T Consensus 151 YA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~---~~~~~~~~rv 227 (891)
T PRK09405 151 YARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENR---GLKDTSDQKV 227 (891)
T ss_pred HHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccc---ccccCCCceE
Confidence 9999999962 36789999999999999999999976533 1112248999
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc--ccccHHHHHhhCCCeEEEec-----------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVK----------- 274 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~----------- 274 (721)
||++||||++||.+|||+.+|++++|+||++|+|+|.+++++++... ..+++.++|++|||++++|+
T Consensus 228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~ 307 (891)
T PRK09405 228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAK 307 (891)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhcc
Confidence 99999999999999999999999999999999999999999999742 46899999999999999984
Q ss_pred --------------c-------------------------------------------CCCCHHHHHHHHHHHHhcCCCC
Q 004970 275 --------------N-------------------------------------------GNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 275 --------------d-------------------------------------------G~~d~~~l~~al~~a~~~~~~P 297 (721)
| || |+++|++|+++|++..++|
T Consensus 308 d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGH-D~~~i~~A~~~A~~~~~~P 386 (891)
T PRK09405 308 DTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGH-DPRKVYAAYKAAVEHKGQP 386 (891)
T ss_pred CCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCC-CHHHHHHHHHHHHhCCCCC
Confidence 4 99 9999999999998745899
Q ss_pred EEEEEEEeeccCC-CCCCCCCcccC-CCCChhhHHHHHHhcCCCC-------CCCCCchhhHHHHHHHHhhhhhhHHHHH
Q 004970 298 TLIRVTTTIGFGS-PNKANSYSVHG-SALGAKEVDATRKNLGWPY-------EPFHVPEDVKKHWSRHVAEGATLEAEWN 368 (721)
Q Consensus 298 ~lI~~~T~kg~G~-~~~~~~~~~H~-~~~~~~~~~~~~~~l~~~~-------~p~~v~~ev~~~~~~~~~~g~~~~~~~~ 368 (721)
++|.++|+||+|. +..++.+.+|+ .+++.++++++++.++|+. .||+.|++-...++.
T Consensus 387 tvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~------------- 453 (891)
T PRK09405 387 TVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKY------------- 453 (891)
T ss_pred EEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHH-------------
Confidence 9999999999999 66688889998 4899999999999999862 245444321111110
Q ss_pred HHHHHHHhhChHHHHHHHHHhcCCCCCccc----ccCC---CCC-----CCCcchhHHHHHHHHHHHHHHh---CCCeEE
Q 004970 369 AKFAEYEKKYPEEAAEFKSISSGQLPAGWE----KALP---TYT-----PESPAEATRNLSQTCLNALAKT---LPGLLG 433 (721)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~----~~~p---~~~-----~~~~~~~~r~a~~~~L~~l~~~---~p~vv~ 433 (721)
+.+. ...+.+.+|..-. ..+| .|. .++..++||.+|+++|.+|++. .++||.
T Consensus 454 --l~~~-----------r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~ 520 (891)
T PRK09405 454 --LHER-----------RKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVP 520 (891)
T ss_pred --HHHH-----------HHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEE
Confidence 0000 0112232221110 0112 221 1245789999999999999996 899999
Q ss_pred EeccCCCcccch--hcc------------------cccCcccCCCCccccCCchHHHHHH--HHHHHHhc--CCCCccEE
Q 004970 434 GSADLASSNMTL--LKM------------------FGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPYC 489 (721)
Q Consensus 434 ~saDl~~s~~~~--~~~------------------~~~f~~~~~p~R~~~~GIaE~~~vg--~aaGlA~~--G~~~~Piv 489 (721)
+++|++.++++. ++. +..|++ .||+||||+||+||+|++ +|+|+|+. |.|++||+
T Consensus 521 i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke-~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~ 599 (891)
T PRK09405 521 IIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKE-SKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFY 599 (891)
T ss_pred eccccccccCcchhhccccccccccccccccccHHHHHHHH-cCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEE
Confidence 999998877651 111 134555 799999999999999999 99997665 54479999
Q ss_pred EEchhH-HHhHHHHHHHh-hhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH-
Q 004970 490 ATFFVF-TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA- 566 (721)
Q Consensus 490 ~~~~~F-~~r~~dqir~~-a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~- 566 (721)
++|+.| ++|++||||+. |+++.+|++++|++|.+++.+|.|||..+|++++|+||||+||.|+|+.|++.+++.+++
T Consensus 600 ~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~r 679 (891)
T PRK09405 600 IYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRR 679 (891)
T ss_pred EehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHH
Confidence 999999 68999999996 999999999999999999999999999999999999999999999999999999999875
Q ss_pred --cCCC--cEEEEEcCCCCCCCCCCccccccCcc--EEEecCCC-CCCCCEEEEEeChhHHHHHHHHHHHHh-CCCceEE
Q 004970 567 --NRKR--PSILALSRQKLPHLAGTSIDGVEKGA--YIISDNSS-GNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRV 638 (721)
Q Consensus 567 --~~~~--P~~Irl~r~~~~~~~~~~~~~~~~G~--~~v~~~~~-~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~~~V 638 (721)
...+ |.|||+...+.+....+....+.+|+ |.+++... ..+.||+||++|.||++|++||++|++ +||+++|
T Consensus 680 m~~~~~~~~yYlrl~ne~~~~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V 759 (891)
T PRK09405 680 MYGEQENVFYYITVMNENYHQPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADV 759 (891)
T ss_pred HhhcCCCeEEEEEeCCCCCCCCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEE
Confidence 1234 77799863333221111112344554 55554210 012389999999999999999999998 7999999
Q ss_pred EecCchhhhHHHHHHHhh----------------hhcccCCceEEEEccccc---ccchhhhcCCceEEEeccCCCCCCH
Q 004970 639 VSFVSWELFDEQSDAYKE----------------SVLPAAVSARVSIEAGST---FGWEKIVGSKGKAIGIDRFGASAPA 699 (721)
Q Consensus 639 I~~~sl~pld~~~~~~~~----------------~v~~~~~~~~v~vE~~~~---~G~~~~v~~~~~~ig~d~f~~~g~~ 699 (721)
||++|++|||++.+.... .++....+.+|++|||.. .-+..++..+..++|+|.|+.||++
T Consensus 760 isv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~Vtv~D~~~aVae~la~~~p~~~~~LGvD~FG~SGt~ 839 (891)
T PRK09405 760 WSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVVAATDYMKLFAEQIRAFVPGDYVVLGTDGFGRSDTR 839 (891)
T ss_pred EECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEEEecchHHHHHHHHHHhCCCCEEEEecCCCCCCCCH
Confidence 999999999999864211 111111133477777743 1233344456688999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHhC
Q 004970 700 GKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 700 ~~l~~~~gl~~e~I~~~i~~ll 721 (721)
++|+++||||+++|+.+++++|
T Consensus 840 ~~L~~~fglda~~Iv~aal~~L 861 (891)
T PRK09405 840 EALRRFFEVDAEYVVVAALKAL 861 (891)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
No 20
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=1.6e-72 Score=645.57 Aligned_cols=605 Identities=22% Similarity=0.249 Sum_probs=485.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhC------CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~~a~------~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~ 155 (721)
..+.++++++++.||+++++|+.+++ +||+|+++|+++|+.+||.++|+.+| .+.+||+ |+|+||++|.+
T Consensus 69 pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~---~~~~rD~-VlSKGHasp~l 144 (885)
T TIGR00759 69 PGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHS---EGGGGDL-VFFQGHAAPGI 144 (885)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCC---CCCCCCE-EEECCcHHHHH
Confidence 55777888899999999999999999 99999999999999999999988654 3458995 99999999999
Q ss_pred HHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 156 YALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 156 y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|+.+++.|+. ++|++||+||+|++.|+|+|++.|++.+|++. +..+++|
T Consensus 145 YA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~---~~~~~rV 221 (885)
T TIGR00759 145 YARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLK---DTGDQKV 221 (885)
T ss_pred HHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccC---CCCCceE
Confidence 9999999962 48999999999999999999999998877642 2358999
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc--ccccHHHHHhhCCCeEEEec-----------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVK----------- 274 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~----------- 274 (721)
||++||||++||.+|||+.+|++++|+||++|+|+|++++++++... ..+++.++|+++||+|++|+
T Consensus 222 yvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~ 301 (885)
T TIGR00759 222 WAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLAR 301 (885)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcC
Confidence 99999999999999999999999999999999999999999999743 35899999999999999985
Q ss_pred ---------------------------------------------------------cCCCCHHHHHHHHHHHHhcCCCC
Q 004970 275 ---------------------------------------------------------NGNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 275 ---------------------------------------------------------dG~~d~~~l~~al~~a~~~~~~P 297 (721)
+|| |+++|++|+++|++..++|
T Consensus 302 d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGH-D~~~I~~A~~~A~~~~grP 380 (885)
T TIGR00759 302 DTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGH-DPRKVYAAYAAAQEHKGQP 380 (885)
T ss_pred CCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCC-CHHHHHHHHHHHHhCCCCC
Confidence 699 9999999999888745689
Q ss_pred EEEEEEEeeccCCC-CCCCCCcccC-CCCChhhHHHHHHhcCCCCC-------CCCCchhhHHHHHHHHhhhhhhHHHHH
Q 004970 298 TLIRVTTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEWN 368 (721)
Q Consensus 298 ~lI~~~T~kg~G~~-~~~~~~~~H~-~~~~~~~~~~~~~~l~~~~~-------p~~v~~ev~~~~~~~~~~g~~~~~~~~ 368 (721)
++|.++|+||+|.+ ..++.+.||+ .+++.++++.++++++|+.. ||+.|++-...++ +.
T Consensus 381 TvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~------------y~ 448 (885)
T TIGR00759 381 TVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVR------------YL 448 (885)
T ss_pred EEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHH------------HH
Confidence 99999999999998 4578899998 58999999999999998543 5555443111111 00
Q ss_pred HHHHHHHhhChHHHHHHHHHhcCCCCCccc----ccCCC---CC-----CCCcchhHHHHHHHHHHHHHHh---CCCeEE
Q 004970 369 AKFAEYEKKYPEEAAEFKSISSGQLPAGWE----KALPT---YT-----PESPAEATRNLSQTCLNALAKT---LPGLLG 433 (721)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~----~~~p~---~~-----~~~~~~~~r~a~~~~L~~l~~~---~p~vv~ 433 (721)
.+ -...+.|-+|..-. ..+|. |. .+++.++|..+|.+.|..|++. -++||.
T Consensus 449 ---~~-----------rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVp 514 (885)
T TIGR00759 449 ---LA-----------RRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVP 514 (885)
T ss_pred ---HH-----------HHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceee
Confidence 00 01123333332111 11231 11 2235789999999999999985 355999
Q ss_pred EeccCCCcccch--hcccccCcc-----------------cCCCCccccCCchHHHHHH--HHHHH--HhcCCCCccEEE
Q 004970 434 GSADLASSNMTL--LKMFGDFQK-----------------DTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCA 490 (721)
Q Consensus 434 ~saDl~~s~~~~--~~~~~~f~~-----------------~~~p~R~~~~GIaE~~~vg--~aaGl--A~~G~~~~Piv~ 490 (721)
+.+|.+.+.+.. ++..+-|.. +.-.+|.++.||+|.++++ +|+|. +.+|.+++||..
T Consensus 515 i~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi 594 (885)
T TIGR00759 515 IVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYI 594 (885)
T ss_pred cCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeE
Confidence 999998776542 222111111 1335899999999999988 46666 568888999999
Q ss_pred EchhH-HHhHHHHHHHhhhcCCcEEEEEecCCc-ccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcC
Q 004970 491 TFFVF-TDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 568 (721)
Q Consensus 491 ~~~~F-~~r~~dqir~~a~~~~pV~~v~t~~g~-~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~ 568 (721)
.|+.| ++|..|.+..+|+|...-.++++.+|. ++...|..||.....-+-..+||+.-|-|+.+.|++.+++..+++.
T Consensus 595 ~YsmFgfqR~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm 674 (885)
T TIGR00759 595 YYSMFGFQRIGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRM 674 (885)
T ss_pred eeccccccchHHHHHHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999 5777899999888777888999999999999999999999988752
Q ss_pred ---CCcEEEEEcC--CCCCC--CCCCccccccCccEEEecCCCCC-CCCEEEEEeChhHHHHHHHHHHHHhC-CCceEEE
Q 004970 569 ---KRPSILALSR--QKLPH--LAGTSIDGVEKGAYIISDNSSGN-KPDVILIGTGSELEIAAKAAEELRKG-GKAVRVV 639 (721)
Q Consensus 569 ---~~P~~Irl~r--~~~~~--~~~~~~~~~~~G~~~v~~~~~~~-g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~VI 639 (721)
...+|.+++- .++++ .+....+.+.+|.|++.+.+..+ +++|.|+++|+.+++|++|+++|+++ |+.++|+
T Consensus 675 ~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVw 754 (885)
T TIGR00759 675 YGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVW 754 (885)
T ss_pred hhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 4567877765 33322 22222356789999997642111 25899999999999999999999886 9999999
Q ss_pred ecCchhhhHHHHH--HH--------------hhhhccc-CCceEEEEcccc---cccchhhhcCCceEEEeccCCCCCCH
Q 004970 640 SFVSWELFDEQSD--AY--------------KESVLPA-AVSARVSIEAGS---TFGWEKIVGSKGKAIGIDRFGASAPA 699 (721)
Q Consensus 640 ~~~sl~pld~~~~--~~--------------~~~v~~~-~~~~~v~vE~~~---~~G~~~~v~~~~~~ig~d~f~~~g~~ 699 (721)
+++|++-|.++.. +. ...++.. ..+ +|++-|+. ...+..+++.+...+|.|.||.|++.
T Consensus 755 SvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP-~va~tDy~~~~~~qir~~vp~~~~~LGtDgFGrSdtr 833 (885)
T TIGR00759 755 SVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAP-VIASTDYVRAFAEQIRPYVPRKYVTLGTDGFGRSDTR 833 (885)
T ss_pred ECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCC-EEEEccchhhhHHHHhhhcCCCceEecCCCCCCCCCH
Confidence 9999999998743 21 1112222 224 48888884 35678888878889999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHhC
Q 004970 700 GKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 700 ~~l~~~~gl~~e~I~~~i~~ll 721 (721)
++|+++|++|++.|+.+++++|
T Consensus 834 ~~lr~~fevDa~~IV~AAL~aL 855 (885)
T TIGR00759 834 ENLRHFFEVDAKSVVLAALYAL 855 (885)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 21
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=4.3e-68 Score=567.59 Aligned_cols=305 Identities=51% Similarity=0.838 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCC-C--
Q 004970 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY-D-- 165 (721)
Q Consensus 89 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~-~-- 165 (721)
+++|++||.++++|+.++++||+|++||++||+++||..+|++||+||+|++|||||+|+||+++.+|+++++.|| .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred -----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHH
Q 004970 166 -----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 222 (721)
Q Consensus 166 -----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~ 222 (721)
|||++||+||||++.|+|||+|.|+++++||+++++..+++|||++||||+|||.+|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
||+.+|++++|+|||+|+|+|++++++.++....+++.++|++|||++++|.||| |+++|.+||++|++..++|++|++
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGh-d~~~i~~A~~~a~~~~~kP~~Ii~ 240 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGH-DVEAIYAAIEEAKASKGKPTVIIA 240 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETT-BHHHHHHHHHHHHHSTSS-EEEEE
T ss_pred HHHHHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCc-HHHHHHHHHHHHHhcCCCCceeec
Confidence 9999999999999999999999999999988788999999999999999977999 999999999999885589999999
Q ss_pred EEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHH
Q 004970 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 382 (721)
Q Consensus 303 ~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 382 (721)
+|+||+|+++++++.+||+.++++|++++++++++|+.++|.+++|+++.|+....++...+++|++.+.+|++++|+++
T Consensus 241 ~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a 320 (332)
T PF00456_consen 241 RTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEA 320 (332)
T ss_dssp EE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ceEEecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 004970 383 AEFKSISSGQLP 394 (721)
Q Consensus 383 ~~~~~~~~~~~p 394 (721)
++|++++++++|
T Consensus 321 ~el~~~l~g~lP 332 (332)
T PF00456_consen 321 QELERRLNGELP 332 (332)
T ss_dssp HHHHHHHTT---
T ss_pred HHHHHHHcCCCC
Confidence 999999999876
No 22
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-65 Score=513.47 Aligned_cols=295 Identities=29% Similarity=0.407 Sum_probs=269.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 489 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv 489 (721)
..++|+++++.|.++.+.++++|++.+|+.+|+.+ ..|.+ +||+||+|+||+||+|+|+|+|||+.|+ +||+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~-----~~f~~-~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk--~Pfv 77 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAK-EFPDRFFNVGIAEQDMVGTAAGLALAGK--KPFV 77 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccch-----hHHHH-hCchhheecchHHHHHHHHHHHHHhcCC--Ccee
Confidence 46899999999999999999999999999988864 45877 7999999999999999999999999995 9999
Q ss_pred EEchhHHH-hHHHHHHHh-hhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc
Q 004970 490 ATFFVFTD-YMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 567 (721)
Q Consensus 490 ~~~~~F~~-r~~dqir~~-a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~ 567 (721)
++|+.|+. |+|||||+. ||+++||+++++|+|+++|+||+|||++||+++||.+|||+|+.|||+.+.+.+++++.+
T Consensus 78 ~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~- 156 (312)
T COG3958 78 STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD- 156 (312)
T ss_pred echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-
Confidence 99999998 999999996 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhh
Q 004970 568 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 647 (721)
Q Consensus 568 ~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pl 647 (721)
.++|+|+|+.|.+.|.+..+..+.|.+|++.++++ |.|+|||++|.||++|++||+.|+++||+++||||.++||+
T Consensus 157 ~~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrd----G~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPi 232 (312)
T COG3958 157 YKGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRD----GSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPI 232 (312)
T ss_pred cCCCEEEEecCCCCCceecCCCceEeccceeEeec----CCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCC
Confidence 69999999999999887766567899999999987 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCceEEEEcccccc-cchhhhc--------CCceEEEe-ccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 004970 648 DEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIVG--------SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 717 (721)
Q Consensus 648 d~~~~~~~~~v~~~~~~~~v~vE~~~~~-G~~~~v~--------~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~I~~~i 717 (721)
|++.+.. ...+++ .+||+|+|+.. |+|+.|. .+.+++|+ +.|+.+|+.++|+++||||+++|++++
T Consensus 233 D~~~i~~--~A~~t~--~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v 308 (312)
T COG3958 233 DEQAILK--AARETG--RIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARV 308 (312)
T ss_pred CHHHHHH--HHhhcC--cEEEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHH
Confidence 9998742 223343 35999999985 5666442 35678999 899999999999999999999999999
Q ss_pred HHhC
Q 004970 718 KEVC 721 (721)
Q Consensus 718 ~~ll 721 (721)
++++
T Consensus 309 ~~~~ 312 (312)
T COG3958 309 LELL 312 (312)
T ss_pred HhhC
Confidence 9875
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=8.5e-61 Score=550.50 Aligned_cols=570 Identities=21% Similarity=0.282 Sum_probs=426.4
Q ss_pred HHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCC-eEEEcCCcchHHHHHHHHHhC-----CC-----------
Q 004970 103 VEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAG-----YD----------- 165 (721)
Q Consensus 103 ~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D-~~V~s~Gh~~~~~y~~l~l~G-----~~----------- 165 (721)
++..-.||+|++.|..-+.+.|-+..-++ +.| .+|++.||++|.+|+.+++.| |+
T Consensus 44 ~K~r~~GHwGt~pgln~vyahln~li~~~--------~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~ 115 (785)
T PRK05261 44 VKPRLLGHWGTTPGLNFIYAHLNRLIRKY--------DLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMAR 115 (785)
T ss_pred CCcccCCCCCCcHHHHHHHHHHHHHHhhc--------CCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHH
Confidence 34455999999999886655554442122 234 567899999999999999999 43
Q ss_pred --------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh---HH
Q 004970 166 --------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---AN 222 (721)
Q Consensus 166 --------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~---~~ 222 (721)
|++.++|+||||++.|+|+|+..+ +.+|+|++|||++++|. .|
T Consensus 116 lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~--------------d~iv~~~vGDGE~EeG~lAa~W 181 (785)
T PRK05261 116 LFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNP--------------DLIVACVVGDGEAETGPLATSW 181 (785)
T ss_pred HHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCC--------------CCEEEEEECcCchhhhhhHHHh
Confidence 677899999999999999997654 77999999999999998 59
Q ss_pred HHHHHHHhcCCCeEEEEEECCCcccccccccc--ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHH--------H----
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAI--------K---- 288 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al--------~---- 288 (721)
++.+++...++++++.|+++|+|+|++++... ..+++.++|++|||+++.| ||| |++++.+++ +
T Consensus 182 ~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~V-DG~-D~~av~~a~a~al~~~i~~i~~ 259 (785)
T PRK05261 182 HSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFV-EGD-DPADMHQEMAAALDTAIEEIRA 259 (785)
T ss_pred hhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEE-CCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999754 4479999999999999998 999 999988884 3
Q ss_pred ---HHHhcC---CCCE--EEEEEEeeccCCCC------CCCCCcccCCCCChh-hHHHHHHhc-CC--CCCC---CCCch
Q 004970 289 ---EAKAVT---DKPT--LIRVTTTIGFGSPN------KANSYSVHGSALGAK-EVDATRKNL-GW--PYEP---FHVPE 347 (721)
Q Consensus 289 ---~a~~~~---~~P~--lI~~~T~kg~G~~~------~~~~~~~H~~~~~~~-~~~~~~~~l-~~--~~~p---~~v~~ 347 (721)
+|+. . .+|+ +|+++|+||+|.+. .+++.+.|+.|++.+ +..+.++.| +| ++.| |..+.
T Consensus 260 iq~~Ar~-~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g 338 (785)
T PRK05261 260 IQKEARE-GGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDG 338 (785)
T ss_pred HHHHHHh-CCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCC
Confidence 3332 3 5899 99999999999774 467789999999764 666777777 78 6667 88888
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCC-Ccccc-cCCCCCCC-CcchhHHHHHHHHHHHH
Q 004970 348 DVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLP-AGWEK-ALPTYTPE-SPAEATRNLSQTCLNAL 424 (721)
Q Consensus 348 ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p-~~~~~-~~p~~~~~-~~~~~~r~a~~~~L~~l 424 (721)
+++..+.+...+|.. ++ ..+|..... ....+++ +.|.. .++...++ ....+||. +++.|.++
T Consensus 339 ~l~~~~~~l~p~g~~-------r~----~~~P~ang~---~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v 403 (785)
T PRK05261 339 RLKPELAALAPKGDR-------RM----GANPHANGG---LLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDV 403 (785)
T ss_pred chhHHHHHhccCchh-------hh----cCCchhcCC---cCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHH
Confidence 887777665444321 11 123311000 0000011 12211 11111222 23568888 99999999
Q ss_pred HHhCCC-eEEEeccCCCcccch--hccc-ccCc--------ccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEc
Q 004970 425 AKTLPG-LLGGSADLASSNMTL--LKMF-GDFQ--------KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATF 492 (721)
Q Consensus 425 ~~~~p~-vv~~saDl~~s~~~~--~~~~-~~f~--------~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~ 492 (721)
++.+|+ ++++++|+..|+.+. ++.+ ..+. ....-+|+++ ||+|+.|.|++.|+++.| .++++.+|
T Consensus 404 ~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG--~~~~~~sY 480 (785)
T PRK05261 404 IKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTG--RHGFFSSY 480 (785)
T ss_pred HHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcC--CCcceecH
Confidence 999999 999999999888752 1100 0010 1124489999 999999999999999988 59999999
Q ss_pred hhHH---HhHHHHH----HHhh---h-cCCc-EEEEEecCCcccCCCCCCCCC---hhhhHHHhcCCCcEEEeeCCHHHH
Q 004970 493 FVFT---DYMRAAI----RISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNILMLRPADGNET 557 (721)
Q Consensus 493 ~~F~---~r~~dqi----r~~a---~-~~~p-V~~v~t~~g~~~g~dG~THq~---~edia~lr~iPnl~V~~P~d~~e~ 557 (721)
..|+ ++|++|+ |... + ..++ +.++.||+.+..|+||+|||. ++.++.+|. |+++||+|+|++|+
T Consensus 481 eaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~ 559 (785)
T PRK05261 481 EAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTL 559 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHH
Confidence 9998 8999997 6431 1 1122 348889999999999999999 999999999 99999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc--cccccCccEEEecCC--CCCCCCEEEEEeChhHHH-HHHHHHHHHhC
Q 004970 558 AGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNS--SGNKPDVILIGTGSELEI-AAKAAEELRKG 632 (721)
Q Consensus 558 ~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~--~~~g~dvtIva~G~~v~~-al~Aa~~L~~~ 632 (721)
..+++.|+++.++|++|.++|+++|+....+ ...+..|.|++...+ .++.+||+|+++|+++.. |++|+++|+++
T Consensus 560 laa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~ 639 (785)
T PRK05261 560 LAVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREH 639 (785)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhh
Confidence 9999999998899999999999999875432 356889999987321 112479999999999987 99999999999
Q ss_pred --CCceEEEecCchhhhHHHHHHH---------hhhhcccCCceEEEEcccccccchhhh----c-CCceEEEeccCCCC
Q 004970 633 --GKAVRVVSFVSWELFDEQSDAY---------KESVLPAAVSARVSIEAGSTFGWEKIV----G-SKGKAIGIDRFGAS 696 (721)
Q Consensus 633 --Gi~~~VI~~~sl~pld~~~~~~---------~~~v~~~~~~~~v~vE~~~~~G~~~~v----~-~~~~~ig~d~f~~~ 696 (721)
|++++|||+. ++|+.+...| .+.++...+++ |..=-+...-+...+ . .+....|..+-|..
T Consensus 640 ~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pv-if~~hgyp~~i~~l~~~r~~~~~~~v~gy~e~g~t 716 (785)
T PRK05261 640 FPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPV-IFAFHGYPWLIHRLTYRRTNHHNFHVRGYKEEGTT 716 (785)
T ss_pred CCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcE-EEEeCCCHHHHHHHhccCCCCCccEEEEEecCCCC
Confidence 9999999994 7888765321 23445445453 222111111111111 1 23345666555666
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 004970 697 APAGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ 719 (721)
-++-+++-..++|.-.++.++.+
T Consensus 717 ttp~dm~~~N~~~r~~l~~~a~~ 739 (785)
T PRK05261 717 TTPFDMVVLNELDRFHLAIDAID 739 (785)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 67899999999999999988765
No 24
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=2.6e-53 Score=464.66 Aligned_cols=612 Identities=23% Similarity=0.269 Sum_probs=472.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhC------CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~~a~------~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~ 155 (721)
.-+.++-+++-.-+|+.++.|+-+++ +||.++..|.+.|..++|.+|+| +++.+ -+.|+ |+-.||.+|.+
T Consensus 72 pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr--~~~~~-~ggDl-V~~qgHaSPg~ 147 (887)
T COG2609 72 PGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEK-DGGDL-VFFQGHASPGI 147 (887)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhc--CcCCC-CCCce-EEEecCCCchH
Confidence 55667667778889999999998866 89999999999999999999876 33322 15687 78999999999
Q ss_pred HHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 156 YALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 156 y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|+..++.|.. .++|+|++||-|...|+-.|.-.||+.+|.-++ ..+.+|
T Consensus 148 yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~---~~~~~v 224 (887)
T COG2609 148 YARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKD---TSDQKV 224 (887)
T ss_pred HHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcC---CCCCeE
Confidence 9999988852 457999999999999999999999998764322 358999
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc--ccccHHHHHhhCCCeEEEeccCC--------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWVKNGN-------- 277 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~dG~-------- 277 (721)
||++|||++.|+.+.+|+..|++.+|+|++||+|.|...+++++... ....+..+|++.||+|+.|+.|.
T Consensus 225 ~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~k 304 (887)
T COG2609 225 WAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAK 304 (887)
T ss_pred EEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcc
Confidence 99999999999999999999999999999999999999999998643 44678889999999999998554
Q ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHhcCCCCE
Q 004970 278 -----------------------------------------------------------TGYDDIRAAIKEAKAVTDKPT 298 (721)
Q Consensus 278 -----------------------------------------------------------~d~~~l~~al~~a~~~~~~P~ 298 (721)
||+..+++|+++|.+..++|+
T Consensus 305 d~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~kg~Pt 384 (887)
T COG2609 305 DTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGRPT 384 (887)
T ss_pred cCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCce
Confidence 699999999999998556999
Q ss_pred EEEEEEeeccCCCCC-CCCCcccCC-CCChhhHHHHHHhcCCCCCCCCCchhhHHH-HHHHHhhhhhhHHHHHHHHHHHH
Q 004970 299 LIRVTTTIGFGSPNK-ANSYSVHGS-ALGAKEVDATRKNLGWPYEPFHVPEDVKKH-WSRHVAEGATLEAEWNAKFAEYE 375 (721)
Q Consensus 299 lI~~~T~kg~G~~~~-~~~~~~H~~-~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~-~~~~~~~g~~~~~~~~~~~~~~~ 375 (721)
+|.++|+||+|.+.. +..+..|.. .++.+.++.+++++++|.. ++-.+. +--....+. .+..+. ...
T Consensus 385 vilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvs-----d~e~e~lpy~~~g~~s-~E~~yl---~~r- 454 (887)
T COG2609 385 VILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVS-----DAELEELPYYHFGEDS-PEYKYL---HAR- 454 (887)
T ss_pred EEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCc-----hhhhhcCCcCCCCCCc-HHHHHH---HHH-
Confidence 999999999999754 667777876 7899999999999887521 110000 000000010 111110 111
Q ss_pred hhChHHHHHHHHHhcCCCCCccc---cc--CCC---C----CCCCcchhHHHHHHHHHHHHHHhC---CCeEEEeccCCC
Q 004970 376 KKYPEEAAEFKSISSGQLPAGWE---KA--LPT---Y----TPESPAEATRNLSQTCLNALAKTL---PGLLGGSADLAS 440 (721)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~p~~~~---~~--~p~---~----~~~~~~~~~r~a~~~~L~~l~~~~---p~vv~~saDl~~ 440 (721)
...+.+-+|.... .. +|. | ......++|..+|.+.|.+++++. ++||-+.+|.+.
T Consensus 455 ----------r~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDear 524 (887)
T COG2609 455 ----------RAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEAR 524 (887)
T ss_pred ----------HHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhh
Confidence 1112233332111 11 221 1 112235899999999999999842 569999999987
Q ss_pred cccch--hcccc-------cCcc----------cCCCCccccCCchHHHHHH--HHHHH--HhcCCCCccEEEEchhH-H
Q 004970 441 SNMTL--LKMFG-------DFQK----------DTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFFVF-T 496 (721)
Q Consensus 441 s~~~~--~~~~~-------~f~~----------~~~p~R~~~~GIaE~~~vg--~aaGl--A~~G~~~~Piv~~~~~F-~ 496 (721)
+.+.. +.-.+ .|.. +.-.+++++.||+|.++++ +|+|. +.+|.+++||..-|+.| +
T Consensus 525 Tfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgf 604 (887)
T COG2609 525 TFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGF 604 (887)
T ss_pred hccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhh
Confidence 66541 11111 1111 1235799999999999988 47776 56888899999999999 9
Q ss_pred HhHHHHHHHhhhcCCc-EEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCC-----
Q 004970 497 DYMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKR----- 570 (721)
Q Consensus 497 ~r~~dqir~~a~~~~p-V~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~----- 570 (721)
+|..|.+..+|.|... .++.+|.+|.++...|..|+.....-+-..+||+.-|-|+.+.|++-+|+..+++..+
T Consensus 605 qRigD~~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~ 684 (887)
T COG2609 605 QRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQEN 684 (887)
T ss_pred hhHHHHHHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999988 9999999999887789999877655556789999999999999999999999976433
Q ss_pred -cEEEEEcCCCCCCC--CCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHh-CCCceEEEecCchhh
Q 004970 571 -PSILALSRQKLPHL--AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFVSWEL 646 (721)
Q Consensus 571 -P~~Irl~r~~~~~~--~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~~~VI~~~sl~p 646 (721)
-.||++...+.++. +....+.+.+|.|.+...+..++..|.|++.|..+++|++|++.|++ .|+.+.|.+++|..-
T Consensus 685 v~yYlt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~e 764 (887)
T COG2609 685 VFYYITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDE 764 (887)
T ss_pred cEEEEEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHH
Confidence 37888877766543 23334678899999876532125789999999999999999999987 699999999999888
Q ss_pred hHHHH----------------HHHhhhhcccCCceEEEEccccccc---chhhhcCCceEEEeccCCCCCCHHHHHHHhC
Q 004970 647 FDEQS----------------DAYKESVLPAAVSARVSIEAGSTFG---WEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 707 (721)
Q Consensus 647 ld~~~----------------~~~~~~v~~~~~~~~v~vE~~~~~G---~~~~v~~~~~~ig~d~f~~~g~~~~l~~~~g 707 (721)
|.++- +.|...+++.+.++ |++-|+.... +..++..+...+|.|.||.|++.++|+++|.
T Consensus 765 L~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p~-Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fe 843 (887)
T COG2609 765 LARDGQAAERWNLLHPTETPRVPYVAQVLNADGPV-VAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFE 843 (887)
T ss_pred HhcchHHHHHHHhcCCCCCCCchHHHHHhccCCCe-EEechhhHhHHHHHhcccCCeeEEeccCCCCccCcHHHHHHHhc
Confidence 77652 24555666645565 8888887643 4566765667899999999999999999999
Q ss_pred CCHHHHHHHHHHhC
Q 004970 708 ITAEAVITAAKEVC 721 (721)
Q Consensus 708 l~~e~I~~~i~~ll 721 (721)
+|+..|+-+++..|
T Consensus 844 vDa~~vv~Aal~~L 857 (887)
T COG2609 844 VDAYYVVVAALSAL 857 (887)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999988753
No 25
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-52 Score=404.39 Aligned_cols=212 Identities=39% Similarity=0.611 Sum_probs=200.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHh
Q 004970 83 TDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA 162 (721)
Q Consensus 83 ~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~ 162 (721)
...+ |.++|.+||+.+++|+..++.||+|++||++||+++||+..|+++|+||.|++|||||+|+||+++++|++|...
T Consensus 6 ~~~~-L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 6 SVDE-LERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred cHHH-HHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 3344 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 163 GYD-------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 163 G~~-------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
||. |+|++||+||||||.|+|||++.|+.+. +.+|||++|||+++
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~----------~~~VyvilGDGEl~ 154 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGS----------PYRVYVILGDGELD 154 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCC----------CceEEEEecCcccc
Confidence 973 8899999999999999999999998763 78999999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 296 (721)
||.+|||+++|++++|+|||.|+|.|+.|+++.++ +...+++.++|+||||++++| ||| |+++|.+|+++++...++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~ev-dG~-d~~~i~~a~~~~~~~~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV-DGH-DIEEIVEALEKAKGSKGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEE-cCc-CHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999996 567789999999999999999 999 999999999999874459
Q ss_pred CEEEEEEEeec
Q 004970 297 PTLIRVTTTIG 307 (721)
Q Consensus 297 P~lI~~~T~kg 307 (721)
|++|+++|+||
T Consensus 233 P~~IIa~Tvkg 243 (243)
T COG3959 233 PTVIIAKTVKG 243 (243)
T ss_pred CeEEEEecccC
Confidence 99999999986
No 26
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=8.8e-51 Score=436.19 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCC-ccccCCchHHHHHHHHHHHHhcCCCCccEE
Q 004970 411 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYC 489 (721)
Q Consensus 411 ~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~-R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv 489 (721)
.++|++++++|.+++++||+++++++|++.+++. +..+.+|++ +||+ ||||+||+||+|+|+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~-~~~~~~f~~-~fp~~R~~n~gIaEq~~vg~AaGlA~~G--~~pvv 79 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGS-YKVTKGLHE-KYGDLRVLDTPIAENSFTGMAIGAAMTG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCc-hhHHHHHHH-HCCCccEeeccccHHHHHHHHHHHHHCC--CEEEE
Confidence 6899999999999999999999999999654331 123467877 7999 99999999999999999999999 59999
Q ss_pred E-EchhHHHhHHHHHHHh-hhc--------CCcEEEEEecCCcccCCCCCCC-CChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004970 490 A-TFFVFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETA 558 (721)
Q Consensus 490 ~-~~~~F~~r~~dqir~~-a~~--------~~pV~~v~t~~g~~~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~ 558 (721)
+ +|..|++|++|||++. |++ ++||+++ +.|...+.+|+|| |++| ++||+||||+|++|+|+.|++
T Consensus 80 ~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d~~ 155 (327)
T CHL00144 80 EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYNAK 155 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHHHH
Confidence 7 5668889999999875 776 5666665 4666666799999 6664 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCC---CCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004970 559 GAYKVAVANRKRPSILALSRQKL---PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 635 (721)
Q Consensus 559 ~~l~~a~~~~~~P~~Irl~r~~~---~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 635 (721)
++++++++ .++|+|||++|.-. +.++.+ .+.+++|++.++++ |.|+|||++|+|+++|++|++.|+++||+
T Consensus 156 ~~l~~a~~-~~~Pv~ire~~~l~~~~~~v~~~-~~~~~~Gk~~v~~~----G~ditiia~G~~v~~al~Aa~~L~~~Gi~ 229 (327)
T CHL00144 156 GLLKSAIR-SNNPVIFFEHVLLYNLKEEIPDN-EYLLPLEKAEVVRP----GNDITILTYSRMRHHVLQAVKVLVEKGYD 229 (327)
T ss_pred HHHHHHHh-CCCcEEEEEcHHhcCCCCCCCCC-CccccCCeeEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhcCCC
Confidence 99999996 58999998432211 233332 34678999999887 68999999999999999999999999999
Q ss_pred eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh------------cCCceEEEe-ccCCC-CCCHH
Q 004970 636 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGA-SAPAG 700 (721)
Q Consensus 636 ~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v------------~~~~~~ig~-d~f~~-~g~~~ 700 (721)
++|||++|++|||++++. +++.+++ . +||+|||.. .|+++.+ ..+..++|+ |.|++ +|+.+
T Consensus 230 ~~VId~~~ikPlD~~~i~--~~~~~t~-~-vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~ 305 (327)
T CHL00144 230 PEIIDLISLKPLDLGTIS--KSVKKTH-K-VLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLE 305 (327)
T ss_pred EEEEecCcCCCCCHHHHH--HHHHhhC-c-EEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHH
Confidence 999999999999999874 4565554 3 599999987 5676533 235678999 78887 56666
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 004970 701 KIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 701 ~l~~~~gl~~e~I~~~i~~ll 721 (721)
++ +|||+++|+++|+++|
T Consensus 306 ~~---~gl~~~~I~~~i~~~l 323 (327)
T CHL00144 306 EA---TVIQPAQIIEAVEQII 323 (327)
T ss_pred HH---hCCCHHHHHHHHHHHH
Confidence 55 5999999999999875
No 27
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=4.3e-50 Score=434.78 Aligned_cols=303 Identities=20% Similarity=0.243 Sum_probs=245.7
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhc
Q 004970 402 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 481 (721)
Q Consensus 402 p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~ 481 (721)
+.|..+.++.++|++++++|.+++++||+++++++|++.+++. +..+.+|.++.+|+||||+||+||+|+|+|+|||+.
T Consensus 18 ~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~-~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~ 96 (356)
T PLN02683 18 RGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGA-YKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYA 96 (356)
T ss_pred cccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCc-cchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHC
Confidence 4555566678999999999999999999999999999765542 222334545334999999999999999999999999
Q ss_pred CCCCccEEEE-chhHHHhHHHHHHHh-hhcC--------CcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEee
Q 004970 482 SPGLIPYCAT-FFVFTDYMRAAIRIS-ALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRP 551 (721)
Q Consensus 482 G~~~~Piv~~-~~~F~~r~~dqir~~-a~~~--------~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P 551 (721)
| ++||+++ |++|++|++|||++. |+++ +||+|++.+ |..+| +|+|||..+ +++||+||||+|++|
T Consensus 97 G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~P 171 (356)
T PLN02683 97 G--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-VGAQHSQCF-AAWYSSVPGLKVLAP 171 (356)
T ss_pred C--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-CCCccccCH-HHHHhcCCCCEEEEe
Confidence 9 5999987 577899999999875 8887 999999865 66677 599998877 699999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEc----CCCCCCCCC--CccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHH
Q 004970 552 ADGNETAGAYKVAVANRKRPSILALS----RQKLPHLAG--TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKA 625 (721)
Q Consensus 552 ~d~~e~~~~l~~a~~~~~~P~~Irl~----r~~~~~~~~--~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~A 625 (721)
+|+.|++.+++++++ .++|+|||++ ++..|.... ...+.+++|+++++++ |.|++||++|+|+++|++|
T Consensus 172 ad~~e~~~~l~~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~----G~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 172 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE----GKDVTIVAFSKMVGYALKA 246 (356)
T ss_pred CCHHHHHHHHHHHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc----CCCEEEEEccHHHHHHHHH
Confidence 999999999999996 5899999963 222222111 1124577899998887 6899999999999999999
Q ss_pred HHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh------------cCCceEEEecc
Q 004970 626 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGIDR 692 (721)
Q Consensus 626 a~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v------------~~~~~~ig~d~ 692 (721)
++.|+++||+++|||++|++|||++.+. +++.+++ . +||+|||.. +||++.+ ..+..++|++.
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~--~~~~~t~-~-vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d 322 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTIN--ASVRKTN-R-LVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGAD 322 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHH--HHHhhcC-e-EEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCC
Confidence 9999999999999999999999999774 4554554 3 599999987 4676533 23567788843
Q ss_pred CCCCCCHHHHHHHhCC-CHHHHHHHHHHhC
Q 004970 693 FGASAPAGKIYKEFGI-TAEAVITAAKEVC 721 (721)
Q Consensus 693 f~~~g~~~~l~~~~gl-~~e~I~~~i~~ll 721 (721)
. +.+...+++++++ ++++|+++|++++
T Consensus 323 ~--~~p~~~~le~~~~p~~~~i~~a~~~~~ 350 (356)
T PLN02683 323 V--PMPYAANLERLALPQVEDIVRAAKRAC 350 (356)
T ss_pred c--CCCccHHHHHhhCCCHHHHHHHHHHHH
Confidence 2 3456677777777 9999999999874
No 28
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=5.9e-50 Score=445.14 Aligned_cols=290 Identities=19% Similarity=0.225 Sum_probs=246.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
..++|++++++|.+++++||+++++++|++.+.+. ++.+.+|.+ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga-~~~t~~l~~-~fgp~R~id~gIaEq~~vg~AaGlA~~G--~rPi 216 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGA-YKVTQGLLQ-EFGARRVIDTPITEHGFAGIGVGAAFAG--LKPI 216 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCc-cccchHHHH-HhCccceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46899999999999999999999999999765543 223455766 68 9999999999999999999999999 6999
Q ss_pred EEE-chhHHHhHHHHHHHh-h--------hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004970 489 CAT-FFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 558 (721)
Q Consensus 489 v~~-~~~F~~r~~dqir~~-a--------~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 558 (721)
+++ ++.|++|++|||++. | ++++||+|++.+.+.+ + .|+ ||+++|+++||+||||+|++|+|+.|++
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~-~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAA-R-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCC-C-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 976 477889999999874 7 8999999998655543 3 677 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEE-----EEcCC-CCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC
Q 004970 559 GAYKVAVANRKRPSIL-----ALSRQ-KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 632 (721)
Q Consensus 559 ~~l~~a~~~~~~P~~I-----rl~r~-~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 632 (721)
++|+++++ .++|+|| |++|. .+|.+ ..+.+++|+++++++ |.|+|||++|.+++.|++|++.|+++
T Consensus 294 ~ll~~ai~-~~~Pv~ile~~~ry~~~~~vp~~---~~~~~~~Gka~v~r~----G~DvtIva~G~~v~~Al~Aa~~L~~~ 365 (464)
T PRK11892 294 GLLKAAIR-DPNPVIFLENEILYGQSFDVPKL---DDFVLPIGKARIHRE----GKDVTIVSFSIGMTYALKAAEELAKE 365 (464)
T ss_pred HHHHHHhh-CCCcEEEEechhhcCCCCCCCCc---CCccccCceEEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhc
Confidence 99999996 5899999 66665 34433 124578999999987 68999999999999999999999999
Q ss_pred CCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccc-cchhhh------------cCCceEEEe-ccCCCCCC
Q 004970 633 GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAP 698 (721)
Q Consensus 633 Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~-G~~~~v------------~~~~~~ig~-d~f~~~g~ 698 (721)
||+++|||++|++|||.+++. +++.+++ . +||+|||+.. |+++.+ ..+..++|+ |.|++
T Consensus 366 GI~~~VIdl~tlkPlD~~~i~--~sv~kt~-~-vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~--- 438 (464)
T PRK11892 366 GIDAEVIDLRTIRPMDTETIV--ESVKKTN-R-LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP--- 438 (464)
T ss_pred CCCEEEEECCCCCcCCHHHHH--HHHHhcC-e-EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---
Confidence 999999999999999999774 5666665 3 5999999874 576533 235678888 67764
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHhC
Q 004970 699 AGKIYKEFGI-TAEAVITAAKEVC 721 (721)
Q Consensus 699 ~~~l~~~~gl-~~e~I~~~i~~ll 721 (721)
++.++++++| +++.|++++++++
T Consensus 439 ~~~~le~~~l~~~~~Iv~av~~~~ 462 (464)
T PRK11892 439 YAANLEKLALPSVAEVVEAVKAVC 462 (464)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHh
Confidence 7889999998 9999999999874
No 29
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1e-49 Score=428.72 Aligned_cols=294 Identities=18% Similarity=0.205 Sum_probs=241.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
+.++|++++++|.+++++||+++++++|++.+++. ++.+.+|++ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~-~~~~~~~~~-~fgp~R~~d~gIaE~~~vg~AaGlA~~G--~~Pi 78 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGA-YKVTQGLLE-QFGPKRVIDTPITEHGFAGLAVGAAFAG--LRPI 78 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCc-chhhHHHHH-HhCCCceeecchhHHHHHHHHHHHHHcC--CeeE
Confidence 35899999999999999999999999999765442 222356877 79 9999999999999999999999999 5999
Q ss_pred EEEch-hHHHhHHHHHHHh-hhcC------CcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHH
Q 004970 489 CATFF-VFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 560 (721)
Q Consensus 489 v~~~~-~F~~r~~dqir~~-a~~~------~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~ 560 (721)
+++|+ +|++|++|||++. |+++ +||.+++.+++..++.+|+|||...+ ++||+||||+|++|+|+.|++.+
T Consensus 79 v~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~ 157 (327)
T PRK09212 79 VEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGL 157 (327)
T ss_pred EEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHH
Confidence 99887 7889999999874 8774 55555555577778899999944444 99999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCC---CCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceE
Q 004970 561 YKVAVANRKRPSILALSRQKLP---HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 637 (721)
Q Consensus 561 l~~a~~~~~~P~~Irl~r~~~~---~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~ 637 (721)
++++++ .++|+||+++|...+ .++. ..+.+++|+++++++ |.|++||+||+++..|++|++.|+++|++++
T Consensus 158 l~~a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~ 231 (327)
T PRK09212 158 LKTAIR-DPNPVIFLENEILYGHSHEVPE-EEESIPIGKAAILRE----GSDVTIVTFSIQVKLALEAAELLEKEGISVE 231 (327)
T ss_pred HHHHHh-CCCcEEEEEchhhcCCCCCCCC-CCccccCCeeEEEEe----CCCEEEEEccHHHHHHHHHHHHHHhcCCcEE
Confidence 999997 589999987665443 2222 234688999998887 6899999999999999999999999999999
Q ss_pred EEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh------------cCCceEEEe-ccCCCCCCHHHHH
Q 004970 638 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGKIY 703 (721)
Q Consensus 638 VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v------------~~~~~~ig~-d~f~~~g~~~~l~ 703 (721)
|||+++++|||.+.+. +.+.+++ . +|++|++.. .|+++.+ ..+..+++. |.|++.| +++
T Consensus 232 vi~~~~l~Pld~~~i~--~~~~~~~-~-vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~l 304 (327)
T PRK09212 232 VIDLRTLRPLDTETII--ESVKKTN-R-LVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANL 304 (327)
T ss_pred EEEEecCCCCCHHHHH--HHHHhCC-e-EEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHH
Confidence 9999999999998764 3443433 3 599999986 4565422 124567877 6787664 899
Q ss_pred HHhCC-CHHHHHHHHHHhC
Q 004970 704 KEFGI-TAEAVITAAKEVC 721 (721)
Q Consensus 704 ~~~gl-~~e~I~~~i~~ll 721 (721)
+++|| ++++|+++|++++
T Consensus 305 e~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 305 EKLALPSEEDIIEAVKKVC 323 (327)
T ss_pred HHhcCCCHHHHHHHHHHHH
Confidence 99998 9999999999874
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=1.1e-49 Score=425.75 Aligned_cols=246 Identities=27% Similarity=0.298 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHH
Q 004970 86 ALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALL 159 (721)
Q Consensus 86 ~~l~~~a~~iR~~~~~~~~~a~~------GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l 159 (721)
|+.+++.+.||..+++|+.++++ ||+|++||++||+++||..+|+++| .|++||| |+|+||++|.+|+++
T Consensus 2 ~i~~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p---~~~~RDR-vlSkGHas~~lYA~L 77 (386)
T cd02017 2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARG---EGGGGDL-VYFQGHASPGIYARA 77 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCC---CCCCCCE-EEeCCcccHHHHHHH
Confidence 55678899999999999999887 9999999999999999998888876 5999999 889999999999999
Q ss_pred HHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEE
Q 004970 160 HLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVIL 211 (721)
Q Consensus 160 ~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~vi 211 (721)
++.|+. |++++||+||+|++.|+|+|+|.|+.+++|++.+ .+++|||++
T Consensus 78 ~l~G~~~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~---~~~rvyvll 154 (386)
T cd02017 78 FLEGRLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT---SDQKVWAFL 154 (386)
T ss_pred HHcCCCCHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCC---CCCeEEEEE
Confidence 999962 3788999999999999999999999888876543 478999999
Q ss_pred CCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEEEecc--------------
Q 004970 212 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKN-------------- 275 (721)
Q Consensus 212 GDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~d-------------- 275 (721)
||||++||++|||+++|++++|+|||+|||+|+++++++++. ...+++.++|++|||++++| |
T Consensus 155 GDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V-~~g~~~~~~f~~~gg 233 (386)
T cd02017 155 GDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKV-IWGSKWDELLAKDGG 233 (386)
T ss_pred cccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEE-ecCCcchhhhccCcc
Confidence 999999999999999999999999999999999999999986 57899999999999999998 6
Q ss_pred -------------------------------------------------------CCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 276 -------------------------------------------------------GNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 276 -------------------------------------------------------G~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
|| |+++|.+||.+++...++|++|
T Consensus 234 ~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGh-D~~~i~~A~~~a~~~~~kPt~I 312 (386)
T cd02017 234 GALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGH-DPRKVYAAYKKAVEHKGKPTVI 312 (386)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCC-CHHHHHHHHHHHHhCCCCCeEE
Confidence 99 9999999999998645799999
Q ss_pred EEEEeeccCCCC-CCCCCcccC-CCCChhhHHHHHHhcCCCC
Q 004970 301 RVTTTIGFGSPN-KANSYSVHG-SALGAKEVDATRKNLGWPY 340 (721)
Q Consensus 301 ~~~T~kg~G~~~-~~~~~~~H~-~~~~~~~~~~~~~~l~~~~ 340 (721)
+++|+||+|.+. +++.+.||+ .+++++++++++++++|+.
T Consensus 313 ia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~~ 354 (386)
T cd02017 313 LAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPV 354 (386)
T ss_pred EEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCCC
Confidence 999999999994 688889997 8899999999999999843
No 31
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-48 Score=419.01 Aligned_cols=294 Identities=21% Similarity=0.237 Sum_probs=243.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
..++|++++++|.+++++||+++++++|++.+++. +..+.+|++ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~-~~~~~~f~~-~fgP~R~id~GIaEq~~vg~AaGlA~~G--~~Pv 109 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGV-YKCTKGLLD-KYGPDRVFDTPITEQGFAGFAIGAAMNG--LRPI 109 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCc-hhhhHHHHH-HhCCCceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 57899999999999999999999999999633221 122467877 79 9999999999999999999999999 5999
Q ss_pred EEE-chhHHHhHHHHHHHh-hhcC------CcEEEEEecCCcccCCCCCCC-CChhhhHHHhcCCCcEEEeeCCHHHHHH
Q 004970 489 CAT-FFVFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETAG 559 (721)
Q Consensus 489 v~~-~~~F~~r~~dqir~~-a~~~------~pV~~v~t~~g~~~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~~ 559 (721)
+++ |++|++|++|||++. |+++ .||.+++++.+.++|++|+|| |..+ ++||+||||+|++|+|+.|++.
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~ 187 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG 187 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence 986 899999999999885 7763 555556666888889999999 5553 9999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCC----CCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004970 560 AYKVAVANRKRPSILALSRQ----KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 635 (721)
Q Consensus 560 ~l~~a~~~~~~P~~Irl~r~----~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 635 (721)
+++++++ .++|+||++||. ..+..+. ..+.+++|+++++++ |.|++||++|+++..|++|++.|+++|++
T Consensus 188 ~l~~a~~-~~~P~~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~Iia~Gs~~~~aleAa~~L~~~Gi~ 261 (355)
T PTZ00182 188 LLKAAIR-DPNPVVFFEPKLLYRESVEVVPE-ADYTLPLGKAKVVRE----GKDVTIVGYGSQVHVALKAAEELAKEGIS 261 (355)
T ss_pred HHHHHHh-CCCcEEEEeehHHhCCCCCCCCc-ccccccCCcceEecC----CCCEEEEEeCHHHHHHHHHHHHHHhCCCc
Confidence 9999997 589999987653 3333222 234577899988886 68999999999999999999999999999
Q ss_pred eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh------------cCCceEEEe-ccCCCCCCHHH
Q 004970 636 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGK 701 (721)
Q Consensus 636 ~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v------------~~~~~~ig~-d~f~~~g~~~~ 701 (721)
++|||+++++|||++.+. +.+.+++ . +|++|||.. .||++.+ ..+..++|+ |.|+++.. .
T Consensus 262 v~vI~~~~l~Pld~e~i~--~~~~~~~-~-IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~--~ 335 (355)
T PTZ00182 262 CEVIDLRSLRPWDRETIV--KSVKKTG-R-CVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAK--N 335 (355)
T ss_pred EEEEEEeeCCCCCHHHHH--HHHhcCC-E-EEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCCh--H
Confidence 999999999999998763 3343333 4 599999987 5676532 236678999 78887754 4
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 004970 702 IYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 702 l~~~~gl~~e~I~~~i~~ll 721 (721)
+++.++++++.|+++|++++
T Consensus 336 le~~~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 336 LEPAYLPDKEKVVEAAKRVL 355 (355)
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 89999999999999999875
No 32
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.1e-45 Score=385.62 Aligned_cols=228 Identities=51% Similarity=0.791 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-------
Q 004970 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD------- 165 (721)
Q Consensus 93 ~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~------- 165 (721)
++||+.+++|+.++++||+|+++|++|++++||..+|++||+||+|.+|||||+|+||++|.+|+++++.|+.
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHH
Q 004970 166 ------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 227 (721)
Q Consensus 166 ------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~ 227 (721)
|+++++|+||+|+|.|+|+|+|.++.+ .+++|||++|||++++|++||++++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~----------~~~~v~~i~GDG~~~~G~~~eal~~ 150 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG----------FDYRVYVLLGDGELQEGSVWEAASF 150 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC----------CCCEEEEEECcccccccHHHHHHHH
Confidence 678899999999999999999998764 3789999999999999999999999
Q ss_pred HHhcCCCeEEEEEECCCcccccccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 228 AGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 228 a~~~~L~~li~IvddN~~~i~~~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
|++++|+|+++|+|||+|++++++. ....+++.+++++|||+++.| ||| |+++|.++++++++..++|++|+++|.|
T Consensus 151 a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v-~G~-d~~~l~~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 151 AGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEV-DGH-DVEEILAALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEE-CCC-CHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 9999999999999999999998773 445689999999999999998 999 9999999999998723899999999999
Q ss_pred ccCCCCCCCCCcccCCCCChhhHHHH
Q 004970 307 GFGSPNKANSYSVHGSALGAKEVDAT 332 (721)
Q Consensus 307 g~G~~~~~~~~~~H~~~~~~~~~~~~ 332 (721)
|+|++++++..+||+.++++++++++
T Consensus 229 g~g~~~~e~~~~~H~~~~~~~~~~~~ 254 (255)
T cd02012 229 GKGVPFMENTAKWHGKPLGEEEVELA 254 (255)
T ss_pred ccccCccCCCccccCCCCCHHHHHhh
Confidence 99999998899999998888777643
No 33
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6e-44 Score=363.49 Aligned_cols=293 Identities=19% Similarity=0.196 Sum_probs=239.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC-CccccCCchHHHHHHHHHHHHhcCCCCccEE
Q 004970 411 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE-ERNVRFGVREHGMGAICNGIALHSPGLIPYC 489 (721)
Q Consensus 411 ~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p-~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv 489 (721)
+++++|++++|.+.|++|++++++++|++..++. ++.+.++++ +|+ +|++|+||+|.+++|+|.|+|+.| +|||+
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGv-f~~T~GL~~-kfG~~RV~DTPiaE~gi~G~avGaA~~G--lrPiv 77 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGV-FRVTKGLQE-KFGEERVIDTPIAESGIAGIAVGAALTG--LRPIV 77 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCCh-hhhchhHHH-HhCccceecCccchhhhHHHHHHHHHcC--CcceE
Confidence 4789999999999999999999999999765554 444455656 675 599999999999999999999999 69999
Q ss_pred E-EchhHHHhHHHHHHHh-h--------hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHH
Q 004970 490 A-TFFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 559 (721)
Q Consensus 490 ~-~~~~F~~r~~dqir~~-a--------~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 559 (721)
. +|.+|+.-++|||-+. + -.++|+++++ +.|.+.+ ++.||+..-.++|.++||++|++|+++.|+++
T Consensus 78 Eiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~-p~G~g~~--~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKG 154 (324)
T COG0022 78 EIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRT-PNGGGIG--GGAQHSQSLEALFAHIPGLKVVMPSTPYDAKG 154 (324)
T ss_pred EEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEc-CCCCCCC--chhhccCCHHHHHhcCCCceEEecCChHHHHH
Confidence 6 7999999999998764 2 2479999995 4555444 55566666669999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCCC----CCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004970 560 AYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 635 (721)
Q Consensus 560 ~l~~a~~~~~~P~~Irl~r~~~~----~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 635 (721)
+|+.|++ +++||++..++.-.. .++ +..+.+++|++.++++ |+|+|||+||.||+.+++||++|+++||+
T Consensus 155 LL~aAIr-d~dPViflE~k~lY~~~~~eVP-~~~Y~iPlGkA~i~re----G~DvTivtyg~mv~~al~AAe~l~~~Gis 228 (324)
T COG0022 155 LLKAAIR-DPDPVIFLEHKRLYRSFKGEVP-EEDYTIPLGKAKIVRE----GSDVTIVTYGAMVHTALEAAEELEKEGIS 228 (324)
T ss_pred HHHHHhc-CCCCEEEEecHHHhcccccCCC-CCCccccccceeeEec----CCceEEEEechHHHHHHHHHHHHhhcCCC
Confidence 9999997 689999987653221 122 3456799999999998 79999999999999999999999999999
Q ss_pred eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhh------------hcCCceEEEe-ccCCCCCCHHHH
Q 004970 636 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKI------------VGSKGKAIGI-DRFGASAPAGKI 702 (721)
Q Consensus 636 ~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~------------v~~~~~~ig~-d~f~~~g~~~~l 702 (721)
++|||+||+.|||.+++. +|+.|+|+. +|+.|.....|++.. +.++..++.- |...+. ...|
T Consensus 229 ~EVIDLRTl~PlD~etIi--~SvkKTgR~-viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~--~~~l 303 (324)
T COG0022 229 AEVIDLRTLSPLDKETII--ASVKKTGRL-VIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY--SAAL 303 (324)
T ss_pred eEEEeccccCccCHHHHH--HHHHhhCcE-EEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc--chhH
Confidence 999999999999999984 799999954 366666666787643 2345556544 554432 4678
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 004970 703 YKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 703 ~~~~gl~~e~I~~~i~~ll 721 (721)
.+.+-.+++.|++++++++
T Consensus 304 E~~~lp~~~~I~~av~~v~ 322 (324)
T COG0022 304 EKAYLPNPERIVAAVKKVL 322 (324)
T ss_pred HhhhCCCHHHHHHHHHHHh
Confidence 8889999999999999875
No 34
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.9e-40 Score=390.61 Aligned_cols=479 Identities=13% Similarity=0.100 Sum_probs=323.4
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCccc
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISI 247 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~~i 247 (721)
.+++|...|.|+|+|+|.++.+... .+.....++|+.|||++ .+|.++|+||+|+.|+++ ++|+||.||+|++
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~----~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~ 388 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDG----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF 388 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCc----ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 4678999999999999999764200 01112678999999999 799999999999999995 6999999999999
Q ss_pred ccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCC
Q 004970 248 DGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 323 (721)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 323 (721)
+++.... ....+.+++++||++++.| ||+ |++++.++.+.|.+ ..++|++|++.|+|-+||...+++ .+
T Consensus 389 tT~~~~~~s~~~~sd~Ak~~giP~~~V-DG~-D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~y---- 461 (924)
T PRK09404 389 TTSPPDDRSTPYCTDVAKMVQAPIFHV-NGD-DPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SF---- 461 (924)
T ss_pred eeCHHHhccchhHHHHHeecCCcEEEE-cCC-CHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cC----
Confidence 9987544 3446788999999999998 999 99999999988865 357999999999999999866433 22
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhc-CCCCCccc---
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS-GQLPAGWE--- 398 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~p~~~~--- 398 (721)
..+++++.+++. .+| ...|++ +++.|...++++.+..+++.+..-+.....+.... ..++..|.
T Consensus 462 r~p~ey~~~~~~----~dp-------i~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~ 530 (924)
T PRK09404 462 TQPLMYKKIKKH----PTT-------RELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYL 530 (924)
T ss_pred CCHHHHHHHHhc----CCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 245666654421 122 234444 33344333333332222222111100000000000 00001111
Q ss_pred ------------------------ccCCC-CC----------------CCCcchhHHHHHHHHHHHHHHhCCCeEEEecc
Q 004970 399 ------------------------KALPT-YT----------------PESPAEATRNLSQTCLNALAKTLPGLLGGSAD 437 (721)
Q Consensus 399 ------------------------~~~p~-~~----------------~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saD 437 (721)
..+|. |. .+....++..|...++..+|+++++|++.++|
T Consensus 531 ~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeD 610 (924)
T PRK09404 531 GHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQD 610 (924)
T ss_pred ccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeee
Confidence 01111 10 12234678899999999999999999999999
Q ss_pred CCCc-------------ccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCcc--EEE-EchhHHH---
Q 004970 438 LASS-------------NMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP--YCA-TFFVFTD--- 497 (721)
Q Consensus 438 l~~s-------------~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~P--iv~-~~~~F~~--- 497 (721)
++.. .+..+.-+..+.+ +| +.|++|++|+|.+++|++.|+|+.| ++| |+. +|.+|+.
T Consensus 611 v~rgtFshRHavl~dq~~gg~~~~~~~l~~-~~g~~rV~nsplsE~~~~G~~~G~a~~g--~~~l~i~E~qfgDF~~~AQ 687 (924)
T PRK09404 611 SGRGTFSHRHAVLHDQKTGETYIPLNHLSE-GQASFEVYDSPLSEEAVLGFEYGYSTAE--PNTLVIWEAQFGDFANGAQ 687 (924)
T ss_pred CCCCcccccchhccccCCCCEeccccchhh-hcCCceEecCcchHHHHHHHHHHHHhcC--CCCceEEEEeccccccchH
Confidence 9742 2222333445545 45 8999999999999999999999999 465 885 7999985
Q ss_pred hHHHHHHHhh----hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcC--CCcEEEeeCCHHHHHHHHHHHH-HcCCC
Q 004970 498 YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM--PNILMLRPADGNETAGAYKVAV-ANRKR 570 (721)
Q Consensus 498 r~~dqir~~a----~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~i--Pnl~V~~P~d~~e~~~~l~~a~-~~~~~ 570 (721)
.++||+-+.+ ....++++++ +.|. +..|+-||+..-.++|... |||+|+.|+++.++.++|+.++ +...+
T Consensus 688 ~~~Dq~i~~~~~k~~~~sglv~~~-p~G~--~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~ 764 (924)
T PRK09404 688 VVIDQFISSGEQKWGRLSGLVMLL-PHGY--EGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRK 764 (924)
T ss_pred HHHHHHHHHHHHHhcCccCeEEEe-cCcC--CCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCC
Confidence 7799976643 1236677765 4443 3457788766666888555 7999999999999999999865 54359
Q ss_pred cEEEEEcCCCCCCCCC-CccccccCccEE-EecCCC-CCCCCE--EEEEeChhHHHHHHHHHHHHhCCCceEEEecCchh
Q 004970 571 PSILALSRQKLPHLAG-TSIDGVEKGAYI-ISDNSS-GNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645 (721)
Q Consensus 571 P~~Irl~r~~~~~~~~-~~~~~~~~G~~~-v~~~~~-~~g~dv--tIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~ 645 (721)
|++|..+|.-+..... .....+..|.+. ++.++. -.+.|| +||++|-+++.++++++.+. ..+++||++++|.
T Consensus 765 Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~ 842 (924)
T PRK09404 765 PLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDIDELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLY 842 (924)
T ss_pred CEEEeccHHHhCCCCCCCCHHHcCCCCceeecccccccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeC
Confidence 9999988754321100 011112222222 111100 014689 79999999999999988553 3499999999999
Q ss_pred hhHHHHHHHhhhhcccC--CceEEEEcccccccchhhh
Q 004970 646 LFDEQSDAYKESVLPAA--VSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 646 pld~~~~~~~~~v~~~~--~~~~v~vE~~~~~G~~~~v 681 (721)
|||.+.+. +++.|++ ..++++-|+....|...++
T Consensus 843 P~~~~~i~--~~v~k~~~~~~~v~vqEe~~n~G~~~~~ 878 (924)
T PRK09404 843 PFPHEELA--AELAKYPNAKEVVWCQEEPKNQGAWYFI 878 (924)
T ss_pred CCCHHHHH--HHHHhcCCCCeEEEEeeCCCCCCcHHHH
Confidence 99998764 5676653 2555666777777755443
No 35
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.6e-39 Score=377.05 Aligned_cols=470 Identities=15% Similarity=0.120 Sum_probs=318.3
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCCe--EEEEEECCCcc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGK--LIAFYDDNHIS 246 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~~--li~IvddN~~~ 246 (721)
..+||+...|.|+|.|.|.++.+... .+..+..++|+.|||++ .+|.++|+||+|+.|+++. +|+||.||+|+
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~----~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg 388 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDS----PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG 388 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCc----ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 46679999999999999998764200 11125688999999997 7999999999999999954 59999999999
Q ss_pred ccccccccc-cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCC
Q 004970 247 IDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGS 322 (721)
Q Consensus 247 i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 322 (721)
++++..... ...+.+++++||+.++.| ||+ |+++++.+++.|.+ ..++|++|++.|+|-+||...+++..+
T Consensus 389 ~tT~~~~~~s~~~~sd~Ak~ygiP~~~V-DG~-D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~y--- 463 (929)
T TIGR00239 389 FTTNPLDARSTPYCSDLAKMIQAPIFHV-NAD-DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSAT--- 463 (929)
T ss_pred EEEcHHHhcCccCHHHHheecCCCEEEE-CCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccC---
Confidence 999765443 346788999999999998 999 99999999988765 357999999999999999876543222
Q ss_pred CCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCC--CCC--cc
Q 004970 323 ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ--LPA--GW 397 (721)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~p~--~~ 397 (721)
.+++++..++. .+| ...|++ ++++|...++++.+..+++.+..- +.++.....+ .+. .|
T Consensus 464 --rp~~~~~i~~~----~dP-------i~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~---~a~~~~~~~~~~~~~~~~~ 527 (929)
T TIGR00239 464 --QPLMYQKIKKH----PTP-------RKVYADKLVSEGVATEEDVTEMVNLYRDALE---AADCVVPSWREMNTASFTW 527 (929)
T ss_pred --CHHHHHHHHhC----CCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---HHHHhhhccCCcccccccc
Confidence 23444433321 122 234444 333443333333332222221110 0011100000 000 11
Q ss_pred cc--------c-------------------CCC-C-----------------CCCCcchhHHHHHHHHHHHHHHhCCCeE
Q 004970 398 EK--------A-------------------LPT-Y-----------------TPESPAEATRNLSQTCLNALAKTLPGLL 432 (721)
Q Consensus 398 ~~--------~-------------------~p~-~-----------------~~~~~~~~~r~a~~~~L~~l~~~~p~vv 432 (721)
.. . +|. + ..+....++..|...++..+|+++++|+
T Consensus 528 ~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~ 607 (929)
T TIGR00239 528 SPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVR 607 (929)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEE
Confidence 00 0 111 1 0112236788999999999999999999
Q ss_pred EEeccCCCccc-------------chhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE--E-EEchhH
Q 004970 433 GGSADLASSNM-------------TLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY--C-ATFFVF 495 (721)
Q Consensus 433 ~~saDl~~s~~-------------~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi--v-~~~~~F 495 (721)
++++|++..+. ..+..+..+.+ +| +.|++|++|+|.+++|++.|+|+.|. +|+ + .+|.+|
T Consensus 608 l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~-~~g~~rV~nsplSE~a~~G~~~G~a~~g~--~~l~i~E~qfgDF 684 (929)
T TIGR00239 608 LSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHN-GQGAFRVWNSVLSEESVLGFEYGYATTSP--RTLVIWEAQFGDF 684 (929)
T ss_pred EEeeeCCCcccccccccccccccCceeecccchhh-hcCCeeEEcCCccHHHHHHHHHhHHhcCC--CCceEEEEeccch
Confidence 99999975221 11223344544 45 79999999999999999999999994 775 6 479999
Q ss_pred HH---hHHHHHHHhh----hcCCcEEEEEecCCcccCCCCCCCCChhhhHHH--hcCCCcEEEeeCCHHHHHHHHH-HHH
Q 004970 496 TD---YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF--RAMPNILMLRPADGNETAGAYK-VAV 565 (721)
Q Consensus 496 ~~---r~~dqir~~a----~~~~pV~~v~t~~g~~~g~dG~THq~~edia~l--r~iPnl~V~~P~d~~e~~~~l~-~a~ 565 (721)
+. .++||+-+.+ ....+++++. +.|. +..|+-||+..-.++| .++|||+|+.|+++.+++++|+ .++
T Consensus 685 ~~~AQv~~Dq~i~~~~~K~~~~sglv~~~-p~G~--~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~ 761 (929)
T TIGR00239 685 ANGAQVVIDQFISSGEQKWGQMSGLVMLL-PHGY--EGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQAL 761 (929)
T ss_pred hcchHHHHHHHHHHHHHHhcCccCeEEEe-cCcC--CCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHH
Confidence 85 7799986642 1246677665 4443 3467788765555777 8999999999999999999999 688
Q ss_pred HcCCCcEEEEEcCCCCC---------CCCCCccccccCccEEEecCCC-CCCCCEE-EEEeChhHHHHHHHHHHHHhCCC
Q 004970 566 ANRKRPSILALSRQKLP---------HLAGTSIDGVEKGAYIISDNSS-GNKPDVI-LIGTGSELEIAAKAAEELRKGGK 634 (721)
Q Consensus 566 ~~~~~P~~Irl~r~~~~---------~~~~~~~~~~~~G~~~v~~~~~-~~g~dvt-Iva~G~~v~~al~Aa~~L~~~Gi 634 (721)
+..++|+++..+|.-+. .++.+ .+..+++.. .+++. ....+++ ||.++.++..++++ ++++++|+
T Consensus 762 r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~~--~~~~~~~~~~~v~~vv~~sg~v~~~l~~-~~~~~~~~ 837 (929)
T TIGR00239 762 RGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGEI--EESGLSLDPEGVKRLVLCSGKVYYDLHE-QRRKNGQK 837 (929)
T ss_pred hCCCCCEEEeccHhhhcCccccCccccCCCC-Ccccccccc--cccccccCccCCcEEEEECchHHHHHHH-HHHhcCCC
Confidence 75589999998875432 11111 122223221 11100 0023566 66666688888888 67777899
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccC--CceEEEEccccccc
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAA--VSARVSIEAGSTFG 676 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~--~~~~v~vE~~~~~G 676 (721)
+++||++++|.|||.+.+. +++.|+. ..++++-|+....|
T Consensus 838 ~v~iirle~L~Pf~~~~i~--~sl~k~~~~~~~vw~qEep~n~G 879 (929)
T TIGR00239 838 DVAIVRIEQLYPFPHKAVK--EVLQQYPNLKEIVWCQEEPLNMG 879 (929)
T ss_pred CEEEEEeeeeCCCCHHHHH--HHHHhcCCCCeEEEEeccCCCCC
Confidence 9999999999999999874 6777764 24545566666655
No 36
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=2.9e-39 Score=326.46 Aligned_cols=206 Identities=27% Similarity=0.437 Sum_probs=168.3
Q ss_pred hhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcc
Q 004970 72 RAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHG 151 (721)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~ 151 (721)
++..+++++.++..| |+++|++||..+++.+++ ++||++++||++|+++|||++ ||+ |+|+||||+|||
T Consensus 3 ~I~~p~dlk~ls~~e-L~~La~eiR~~ii~~vs~-~GGHl~snLGvVELTiALH~v---Fd~------p~DkivwDvGHQ 71 (270)
T PF13292_consen 3 KINSPEDLKKLSIEE-LEQLAQEIREFIIETVSK-TGGHLASNLGVVELTIALHYV---FDS------PKDKIVWDVGHQ 71 (270)
T ss_dssp G-SSHHHHTTS-GGG-HHHHHHHHHHHHHHHCTC-CCSTHHHHHCCHHHHHHHHHH---S-T------TTSEEEESSSTT
T ss_pred CCCCHHHHHcCCHHH-HHHHHHHHHHHHHHHHhh-cCCCCCCCccHHHHHHHHHHH---hCC------CCCeEEEecccc
Confidence 466788999999999 999999999999999998 999999999999999999999 886 999999999999
Q ss_pred hHHHHHHHHHhCCC----------Cc------------ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEE
Q 004970 152 CMLQYALLHLAGYD----------SV------------QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 209 (721)
Q Consensus 152 ~~~~y~~l~l~G~~----------gi------------e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~ 209 (721)
+ |+++.++|+. |+ -|.+||.|.++|+|+|||.|+++.+. +++|||
T Consensus 72 ~---Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~----------~~~vVa 138 (270)
T PF13292_consen 72 A---YVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGE----------DRKVVA 138 (270)
T ss_dssp ----HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS-------------EEE
T ss_pred c---chhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCC----------CCcEEE
Confidence 9 9999999973 22 26899999999999999999998763 789999
Q ss_pred EECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc---------------cc------------------
Q 004970 210 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA---------------FT------------------ 256 (721)
Q Consensus 210 viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~---------------~~------------------ 256 (721)
+||||+++.||+|||||.|+..+ .++++|+|||+++|+.++... ..
T Consensus 139 VIGDGalt~Gma~EALN~~g~~~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~ 217 (270)
T PF13292_consen 139 VIGDGALTGGMAFEALNNAGHLK-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAK 217 (270)
T ss_dssp EEETTGGGSHHHHHHHHHHHHHT--SEEEEEEE-SBSSSB--SSHCCC--------------------------------
T ss_pred EECCcchhHHHHHHHHHHHHhcC-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999998 599999999999999887510 00
Q ss_pred ---ccH----HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 257 ---ENV----DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 257 ---~~~----~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
+.+ ..+|+++||+|+.++||| |+++|.++|+++++ .++|++||+.|
T Consensus 218 r~~~s~K~~~~~lFe~LG~~Y~GPiDGH-dl~~Li~~l~~~K~-~~gPvllHV~T 270 (270)
T PF13292_consen 218 RIKESLKGFSPNLFEELGFDYIGPIDGH-DLEELIEVLENAKD-IDGPVLLHVIT 270 (270)
T ss_dssp -----------CCCHHCT-EEEEEEETT--HHHHHHHHHHHCC-SSSEEEEEEE-
T ss_pred HHhhhhhhhhHHHHHHcCCeEEeccCCC-CHHHHHHHHHHHhc-CCCCEEEEEeC
Confidence 001 134889999999999999 99999999999998 89999999987
No 37
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=2.6e-37 Score=309.26 Aligned_cols=176 Identities=26% Similarity=0.413 Sum_probs=154.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHH-------------hCC------CCcc
Q 004970 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL-------------AGY------DSVQ 168 (721)
Q Consensus 108 ~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l-------------~G~------~gie 168 (721)
+||+|++||++||+++||+. +++ +|||||+|+||++|.+|.++.. .|. ++++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~ 71 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYV---FDS------PKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDA 71 (195)
T ss_pred CCCCCcchhHHHHHHHHHHh---cCC------CCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCce
Confidence 59999999999999999964 553 7999999999999776654321 001 1678
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
+++|++|+++|.|+|+|+|.|+++ .+++|||++|||+++||++||++++|+++ +.|+++|+|||+++++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~~~li~vvdnN~~~~~ 140 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKG----------KKRKVIAVIGDGALTGGMAFEALNNAGYL-KSNMIVILNDNEMSIS 140 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhC----------CCCeEEEEEcccccccChHHHHHHHHHHh-CCCEEEEEECCCcccC
Confidence 899999999999999999999765 27899999999999999999999999999 5699999999999999
Q ss_pred ccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCC
Q 004970 249 GDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS 310 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 310 (721)
++++ +..++++++||++..++||| |++++.++++++++ .++|++|+++|+||+|+
T Consensus 141 ~~~~-----~~~~~~~a~G~~~~~~vdG~-d~~~l~~a~~~a~~-~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 141 PNVG-----TPGNLFEELGFRYIGPVDGH-NIEALIKVLKEVKD-LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCC-----CHHHHHHhcCCCccceECCC-CHHHHHHHHHHHHh-CCCCEEEEEEEecccCc
Confidence 8776 57788999999999734999 99999999999987 78999999999999986
No 38
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.2e-37 Score=303.30 Aligned_cols=294 Identities=17% Similarity=0.216 Sum_probs=238.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCcc
Q 004970 409 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 487 (721)
Q Consensus 409 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~P 487 (721)
..++.|+|+++++.+.|++||++++++++++-+++.+. ....+.+ +| +.|++|++|.|.+..|+|.|.|+.| ++|
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gayk-vtkGL~~-K~G~~RV~DTPItE~gFtG~avGAA~~G--LrP 108 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYK-VTKGLLD-KFGDKRVLDTPITEMGFTGIAVGAAMAG--LRP 108 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeee-hhhhHHH-hcCCceeecCcchhcccchhhHhHHHhC--cch
Confidence 46789999999999999999999999999987766542 2223334 46 6799999999999999999999999 699
Q ss_pred EEE-EchhHHHhHHHHHHHhh---------hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHH
Q 004970 488 YCA-TFFVFTDYMRAAIRISA---------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 557 (721)
Q Consensus 488 iv~-~~~~F~~r~~dqir~~a---------~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~ 557 (721)
||. +-..|+..++|||-|+| .+++|++|++ +.|.+.| -|..| +..-.+|+.++||++|++|.+++|+
T Consensus 109 i~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRG-PnG~~~g-v~AqH-SQ~f~~wy~siPGlkvvapysaeda 185 (359)
T KOG0524|consen 109 ICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRG-PNGAAAG-VAAQH-SQDFASWYGSIPGLKVVAPYSAEDA 185 (359)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeC-CCCcccc-hhhhh-hhhhHHHhccCCCceEeccCChhhh
Confidence 994 78899999999998864 3579999997 5666555 56777 3444589999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCC----CCCCCCCC---ccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHH
Q 004970 558 AGAYKVAVANRKRPSILALSRQ----KLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 630 (721)
Q Consensus 558 ~~~l~~a~~~~~~P~~Irl~r~----~~~~~~~~---~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 630 (721)
+++|+.|++ +++|+++...-- ..+ ++++ +.+.+++|++.+.++ |+|||||++.-++..|++||+.|.
T Consensus 186 kGLlKaAIR-d~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~----G~~iTivt~Sr~v~~~leAA~~L~ 259 (359)
T KOG0524|consen 186 KGLLKAAIR-DENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIERE----GTHITIVTYSRMVGHCLEAAETLV 259 (359)
T ss_pred hhHHHHhcc-CCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeec----CCceEEEEechhHHHHHHHHHHHH
Confidence 999999997 689999976421 111 1111 245678999999987 799999999999999999999999
Q ss_pred hCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhh------------hcCCceEE-EeccCCCC
Q 004970 631 KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKI------------VGSKGKAI-GIDRFGAS 696 (721)
Q Consensus 631 ~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~------------v~~~~~~i-g~d~f~~~ 696 (721)
++|++++|||++||+|||.++|. .++.|+++ +|+||++.. +|.+.. ++++..++ |.|-..+.
T Consensus 260 ~~Gvs~EVInlrSirP~D~~tI~--~Sv~KT~~--lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PY 335 (359)
T KOG0524|consen 260 AKGVSAEVINLRSIRPFDIETIG--ASVKKTNR--LVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPY 335 (359)
T ss_pred hcCCCceeEeeeccCcccHHHHH--HHHhhhce--EEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCcc
Confidence 99999999999999999999986 68988874 499999986 566542 34455554 44655554
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 697 APAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
..+|.+..-.++++|+.++++++
T Consensus 336 --a~~lE~~a~p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 336 --AKTLEDWAVPQPADIVTAVKKLC 358 (359)
T ss_pred --chhhHhhcCCCHHHHHHHHHHhh
Confidence 35777778889999999999864
No 39
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2.1e-35 Score=285.63 Aligned_cols=154 Identities=42% Similarity=0.580 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhH
Q 004970 416 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF 495 (721)
Q Consensus 416 a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F 495 (721)
+++++|.++++++|+++++++|++.++. +..|++ +||+||+|+||+|++|+|+|+|||+.| ++||+++|..|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~-----~~~~~~-~~p~r~i~~gIaE~~~vg~A~GlA~~G--~~pi~~~~~~f 73 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTG-----LDKFAK-KFPDRFIDVGIAEQNMVGIAAGLALHG--LKPFVSTFSFF 73 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCC-----cHHHHH-hCCCCeEEeChhHHHHHHHHHHHHHCC--CeEEEEECHHH
Confidence 5788999999999999999999976543 356766 799999999999999999999999999 69999999889
Q ss_pred HHhHHHHHH-HhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEE
Q 004970 496 TDYMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL 574 (721)
Q Consensus 496 ~~r~~dqir-~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~I 574 (721)
++|++|||| +.|++++||+++++++|++.|++|+|||+++|++++|++||++|++|+|+.|+++++++++++ ++|+||
T Consensus 74 ~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-~~P~~i 152 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY-DGPVYI 152 (156)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC-CCCEEE
Confidence 999999999 569999999999999999999999999999999999999999999999999999999999974 789999
Q ss_pred EEcC
Q 004970 575 ALSR 578 (721)
Q Consensus 575 rl~r 578 (721)
|++|
T Consensus 153 rl~~ 156 (156)
T cd07033 153 RLPR 156 (156)
T ss_pred EeeC
Confidence 9986
No 40
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=9.5e-33 Score=273.02 Aligned_cols=168 Identities=26% Similarity=0.317 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcC-CCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS-PGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G-~~~~Pi 488 (721)
+.++|++++++|.+++++||+++++++|++++++....+ ......|+||+|+||+|++|+|+|+|||+.| . ++|+
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~---~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~-~~~~ 77 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFG---LAFPFGPGRFINTGIAEQNMVGMAAGLALAGGL-RPPV 77 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTT---HHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSS-EEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhh---ccccCCCceEEecCcchhhccceeeeeeecccc-ccee
Confidence 578999999999999999999999999998655432111 1111126699999999999999999999999 3 3788
Q ss_pred EEEchhHHH----hHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 004970 489 CATFFVFTD----YMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKV 563 (721)
Q Consensus 489 v~~~~~F~~----r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~ 563 (721)
+.+|++|+. |+++|++. .+++++||+ +++++|+++|.+|+|||+++|+++||+||||+|++|+|+.|++++|++
T Consensus 78 ~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~ 156 (178)
T PF02779_consen 78 ESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRA 156 (178)
T ss_dssp EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHH
T ss_pred Eeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 899999999 99999985 699999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEEcCCCCC
Q 004970 564 AVAN-RKRPSILALSRQKLP 582 (721)
Q Consensus 564 a~~~-~~~P~~Irl~r~~~~ 582 (721)
+++. .++|+|||++|+.++
T Consensus 157 a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 157 AIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHSSSSSEEEEEEESSEES
T ss_pred HHHhCCCCeEEEEeeHHhCC
Confidence 9973 589999999998765
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.97 E-value=9.8e-32 Score=261.72 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCC-ccccCCchHHHHHHHHHHHHhcCCCCccEEE-Ech
Q 004970 416 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFF 493 (721)
Q Consensus 416 a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~-R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~ 493 (721)
+++++|.+++++||+++++++|+..+++. ...+..|++ +||+ ||||+||+||+|+|+|+|||+.| ++||++ +|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~-~~~~~~~~~-~~p~~R~~~~gIaEq~~vg~AaGlA~~G--~~pi~~~~~a 77 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGV-FKVTKGLLD-KFGPDRVIDTPIAEAGIVGLAVGAAMNG--LRPIVEIMFA 77 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCc-chHhHHHHH-hCCCceEEeCCCcHHHHHHHHHHHHHcC--CEEEEEeehH
Confidence 67889999999999999999999654321 112456877 7999 99999999999999999999999 599998 799
Q ss_pred hHHHhHHHHHHHh-hhc--------CCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHH
Q 004970 494 VFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 564 (721)
Q Consensus 494 ~F~~r~~dqir~~-a~~--------~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a 564 (721)
+|+.|++||||+. |++ ++||++++.+.| ++.+|+|| +.+|+++||+||||+|++|+|+.|++++++++
T Consensus 78 ~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~ 154 (167)
T cd07036 78 DFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999974 776 599999985544 56789986 58899999999999999999999999999999
Q ss_pred HHcCCCcEEEEEcC
Q 004970 565 VANRKRPSILALSR 578 (721)
Q Consensus 565 ~~~~~~P~~Irl~r 578 (721)
++ .++|++|+.+|
T Consensus 155 ~~-~~~P~~~~e~k 167 (167)
T cd07036 155 IR-DDDPVIFLEHK 167 (167)
T ss_pred Hh-CCCcEEEEecC
Confidence 96 58999999875
No 42
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.8e-29 Score=274.81 Aligned_cols=489 Identities=21% Similarity=0.281 Sum_probs=317.7
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCC-eEEEcCCcchHHHHHHHHHhCC-----C-------------
Q 004970 105 KANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAGY-----D------------- 165 (721)
Q Consensus 105 ~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D-~~V~s~Gh~~~~~y~~l~l~G~-----~------------- 165 (721)
..--||+|++.+..-+.+-|-+..-++ +.+ .+|...||+.+.+-+..++.|. +
T Consensus 57 ~r~lGHwGt~pg~s~~Y~H~nr~i~~~--------d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~ 128 (793)
T COG3957 57 ARLLGHWGTQPGLSFIYAHLNRLISKY--------DANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLF 128 (793)
T ss_pred chhcccccCCCCchhhhhhhhHHHHhh--------CcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHH
Confidence 345899999999764433332221122 334 4456789999998776666663 1
Q ss_pred ------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh---HHHH
Q 004970 166 ------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANEA 224 (721)
Q Consensus 166 ------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~---~~Ea 224 (721)
|.-...|.||++++.|.|+|+-.+ |-.+.|++|||+-.+|. .|-+
T Consensus 129 ~qFs~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d~P--------------dli~~~vvGDGeaetgplatsWhs 194 (793)
T COG3957 129 KQFSFPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAFDNP--------------DLIVACVVGDGEAETGPLATSWHS 194 (793)
T ss_pred HhccCCCCcccccCCCCCCccCcCcchhHHHHHHHHhhcCCC--------------CcEEEEEecccccccCcccccccc
Confidence 333478999999999999986444 88999999999776554 5666
Q ss_pred HHHHHhcCCCeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHH----H---------
Q 004970 225 SSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK----E--------- 289 (721)
Q Consensus 225 l~~a~~~~L~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~----~--------- 289 (721)
-.+..--.-..++-|+.-|+|.|+-++.. ...+++.++|++|||+.+.| +|+ |+++..+.+. .
T Consensus 195 ~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~v-eg~-d~~d~hq~mAa~ldt~~~~i~~iq 272 (793)
T COG3957 195 NKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFV-EGA-DPADMHQLMAAVLDTAFEEIQRIQ 272 (793)
T ss_pred ccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEe-cCC-ChHHhhhhHHHHHHHHHHHHHHHH
Confidence 55555555668999999999999988853 44567899999999999998 888 8887333322 1
Q ss_pred --HHh--cCCCCE--EEEEEEeeccCCCCC------CCCCcccCCCCC-----hhhH---HHHHHhcCCCCCCCCCchhh
Q 004970 290 --AKA--VTDKPT--LIRVTTTIGFGSPNK------ANSYSVHGSALG-----AKEV---DATRKNLGWPYEPFHVPEDV 349 (721)
Q Consensus 290 --a~~--~~~~P~--lI~~~T~kg~G~~~~------~~~~~~H~~~~~-----~~~~---~~~~~~l~~~~~p~~v~~ev 349 (721)
++. ...+|. +|+++|.||++-+.. ++....|..|+. ++.+ +.+.+. +.| +|
T Consensus 273 ~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~s----y~p----~e- 343 (793)
T COG3957 273 RRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKS----YKP----EE- 343 (793)
T ss_pred HHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHHh----cCh----Hh-
Confidence 222 122343 578999999987654 233345766542 2222 222211 111 11
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhc-CCCCCc----ccccCCCC--------CCCCcchhHHHH
Q 004970 350 KKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS-GQLPAG----WEKALPTY--------TPESPAEATRNL 416 (721)
Q Consensus 350 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~p~~----~~~~~p~~--------~~~~~~~~~r~a 416 (721)
+|.+ .|+...+-|. + .| .-++++. ++-+.. .+-.+|.+ .++........+
T Consensus 344 --lfde---~gaL~~e~~~--~------ap----~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~ 406 (793)
T COG3957 344 --LFDE---HGALKPELRE--L------AP----KGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTA 406 (793)
T ss_pred --hhcc---cCCCCHHHHH--h------cc----ccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHH
Confidence 1110 1111111110 0 00 0011111 110000 01123322 233334445678
Q ss_pred HHHHHHHHHHhCCC-eEEEeccCCCcccch--hcccccC------cc---cCCCCccccCCchHHHHHHHHHHHHhcCCC
Q 004970 417 SQTCLNALAKTLPG-LLGGSADLASSNMTL--LKMFGDF------QK---DTPEERNVRFGVREHGMGAICNGIALHSPG 484 (721)
Q Consensus 417 ~~~~L~~l~~~~p~-vv~~saDl~~s~~~~--~~~~~~f------~~---~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~ 484 (721)
+++.|.++++.|++ +.++++|...|+... ++.+... .+ ....+|+++ .++|+.+.|++.|+++.|+
T Consensus 407 lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr- 484 (793)
T COG3957 407 LGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGR- 484 (793)
T ss_pred HHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCC-
Confidence 99999999999998 999999987776542 2322211 00 023579999 6999999999999999997
Q ss_pred CccEEEEchhHH---HhHHHHH--HH-hh--------hcCCcEEEEEecCCcccCCCCCCCCChhhhHH-HhcCCC-cEE
Q 004970 485 LIPYCATFFVFT---DYMRAAI--RI-SA--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS-FRAMPN-ILM 548 (721)
Q Consensus 485 ~~Piv~~~~~F~---~r~~dqi--r~-~a--------~~~~pV~~v~t~~g~~~g~dG~THq~~edia~-lr~iPn-l~V 548 (721)
+-++++|..|+ +-|+.|. .. .| +..++.+ .|..-+--+.+|.|||...-+.. +.-+++ ++|
T Consensus 485 -~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l--~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRv 561 (793)
T COG3957 485 -HGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYL--LTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRV 561 (793)
T ss_pred -ccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccce--eehhhhhcccCCCccCCchHHHHHHhhccCceeE
Confidence 99999999997 4677762 11 22 2234444 34344556999999996554433 445565 499
Q ss_pred EeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC--CccccccCccEEEecC-CCCCCCCEEEEEeChhH-HHHHH
Q 004970 549 LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG--TSIDGVEKGAYIISDN-SSGNKPDVILIGTGSEL-EIAAK 624 (721)
Q Consensus 549 ~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~--~~~~~~~~G~~~v~~~-~~~~g~dvtIva~G~~v-~~al~ 624 (721)
|.|+|+|.+..++.+|++..+.-.+|..+|++.|+... +....+..|..++.-. ++.|.+||++.+.|.+. .++++
T Consensus 562 yfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~la 641 (793)
T COG3957 562 YFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLA 641 (793)
T ss_pred ecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHH
Confidence 99999999999999999988888899999999887543 2234456666554332 11125789999999977 79999
Q ss_pred HHHHHHhCC--CceEEEecCchhhhH
Q 004970 625 AAEELRKGG--KAVRVVSFVSWELFD 648 (721)
Q Consensus 625 Aa~~L~~~G--i~~~VI~~~sl~pld 648 (721)
|++.|++++ +.++||++..+.-|.
T Consensus 642 Aa~~L~e~~p~l~vRvVnVvdl~rLq 667 (793)
T COG3957 642 AAQILREEGPELRVRVVNVVDLMRLQ 667 (793)
T ss_pred HHHHHHHhCccceEEEEEEecchhcc
Confidence 999999998 999999877655443
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=8.6e-30 Score=249.63 Aligned_cols=163 Identities=32% Similarity=0.457 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHhCC-CeEEEeccCCCcccchhcccccCcc--cCCCCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 412 ATRNLSQTCLNALAKTLP-GLLGGSADLASSNMTLLKMFGDFQK--DTPEERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 412 ~~r~a~~~~L~~l~~~~p-~vv~~saDl~~s~~~~~~~~~~f~~--~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
++|++++++|.+++++++ +++++++|++.+++... ...|.. ..+|+||+|+||+|++|+++|+|||++|. +||
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~--~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~--~pi 76 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR--GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGL--RPV 76 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc--CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCC--CcE
Confidence 478899999999999965 89999999987664321 111211 01345599999999999999999999994 999
Q ss_pred EEEchhHHHhHHHHHHHhhhcCCcEEEEEecC-CcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc
Q 004970 489 CATFFVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 567 (721)
Q Consensus 489 v~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~-g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~ 567 (721)
+++|..|+.|+++|+|+.+.++ +++++++++ |...|.+|+|||+++|++++++|||++|++|+|+.|++++|+++++.
T Consensus 77 ~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~ 155 (168)
T smart00861 77 VAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRR 155 (168)
T ss_pred EEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999999999985555 666666674 68899999999999999999999999999999999999999999975
Q ss_pred CCCcEEEEEcCC
Q 004970 568 RKRPSILALSRQ 579 (721)
Q Consensus 568 ~~~P~~Irl~r~ 579 (721)
.++|+|||++|+
T Consensus 156 ~~~p~~i~~~~~ 167 (168)
T smart00861 156 DDGPPVIRLERK 167 (168)
T ss_pred CCCCEEEEecCC
Confidence 578999999875
No 44
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.96 E-value=1.6e-29 Score=247.34 Aligned_cols=292 Identities=16% Similarity=0.137 Sum_probs=224.9
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCc
Q 004970 408 SPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 486 (721)
Q Consensus 408 ~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~ 486 (721)
++++...++++++|+-.++.||+-+++++|++-.+ .+...-++++ +| .+|+||++++||+++|+..|+|..|. +
T Consensus 38 ~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fgg--vfrct~gl~~-kfgk~rvfntplceqgivgfgig~aa~g~--~ 112 (362)
T KOG0525|consen 38 KKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGG--VFRCTTGLAE-KFGKDRVFNTPLCEQGIVGFGIGLAAMGA--T 112 (362)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEeccccccce--EEEeecchHH-HhCccccccCchhhcccceechhhhhccc--c
Confidence 34677889999999999999999999999996432 2333344555 55 48999999999999999999999995 8
Q ss_pred cEEE-EchhHHHhHHHHHHHh-h---h-----cCCc-EEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHH
Q 004970 487 PYCA-TFFVFTDYMRAAIRIS-A---L-----CEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGN 555 (721)
Q Consensus 487 Piv~-~~~~F~~r~~dqir~~-a---~-----~~~p-V~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~ 555 (721)
.|.. .|++|+--++|||-+- + | -++. ..++. +.|. +|..|..| +..-.++|.+.||++|+.|..+.
T Consensus 113 aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~-p~ga-vghg~~yh-sqspeaff~h~pgikvviprsp~ 189 (362)
T KOG0525|consen 113 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA-PWGA-VGHGALYH-SQSPEAFFCHVPGIKVVIPRSPR 189 (362)
T ss_pred eEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEec-cccc-cccccccc-cCCchhheecCCCceEEecCCcc
Confidence 8987 4888888899999873 2 1 2444 45543 3333 67666666 33444899999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEcC----CCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHH-
Q 004970 556 ETAGAYKVAVANRKRPSILALSR----QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR- 630 (721)
Q Consensus 556 e~~~~l~~a~~~~~~P~~Irl~r----~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~- 630 (721)
+++++|-.+++ +++|+++..|| +...+++.. .+.++.+.+++.++ |+|+|||+||..+|.++++|..-+
T Consensus 190 qakglllscir-dpnp~iffepk~lyr~a~edvp~~-dy~iplsqaevire----g~ditlv~wgtqvh~i~e~a~l~~e 263 (362)
T KOG0525|consen 190 QAKGLLLSCIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMIPLSQAEVIRE----GSDITLVAWGTQVHVIMEQACLAKE 263 (362)
T ss_pred hhhceeeeecc-CCCceEEechHHHHHHhhhhCCCC-CccccccHHHHhhc----CCceEEEEcchhhHHHHHHHHhhHH
Confidence 99999999997 68999999874 444445443 46688999998887 799999999999999999887543
Q ss_pred hCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhc------------CCc-eEEEeccCCCCC
Q 004970 631 KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKG-KAIGIDRFGASA 697 (721)
Q Consensus 631 ~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~------------~~~-~~ig~d~f~~~g 697 (721)
+.|++++|||+.++-|||+++++ ++|.|+|+ ++|+.|.-.+.||+..+. ++. +.-|+|..-++
T Consensus 264 k~giscevidlkti~pwd~d~v~--~sv~ktgr-llisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~- 339 (362)
T KOG0525|consen 264 KLGISCEVIDLKTIIPWDKDTVE--ESVQKTGR-LLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH- 339 (362)
T ss_pred hcCCceEEEeeecccCccHHHHH--HHHHhhce-EEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-
Confidence 46999999999999999999886 78999995 459999998899876542 122 23566643322
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Q 004970 698 PAGKIYKEFGITAEAVITAAKEV 720 (721)
Q Consensus 698 ~~~~l~~~~gl~~e~I~~~i~~l 720 (721)
...-.|-.+...|.++|++.
T Consensus 340 ---vfepfy~ptk~ki~daik~~ 359 (362)
T KOG0525|consen 340 ---VFEPFYMPTKNKILDAIKKT 359 (362)
T ss_pred ---cccccccCcHhHHHHHHHHh
Confidence 12224556888888888764
No 45
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.90 E-value=6.9e-22 Score=210.41 Aligned_cols=227 Identities=23% Similarity=0.268 Sum_probs=163.0
Q ss_pred CCcHHHHHH--HHHHHHHHHHHHHHhhCCCCCC----CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEE---cCCc--
Q 004970 82 STDAALVEK--SVNTIRFLAVDAVEKANSGHPG----LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL---SAGH-- 150 (721)
Q Consensus 82 ~~~~~~l~~--~a~~iR~~~~~~~~~a~~GH~g----~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~---s~Gh-- 150 (721)
+++.++++- ....+|.+=.++......|-.+ ++.| .|...+.-...|+ + +.|.++- +.||
T Consensus 24 ~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~G-qEA~~vg~~~aL~--~------~~D~i~~~YR~h~~~l 94 (358)
T COG1071 24 LSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIG-QEAVQVGAAAALR--P------GEDWIFPTYRDHGHLL 94 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCccc-HHHHHHHHHHhcC--C------CCCEeecccCccccce
Confidence 555555543 3566776666665544444444 4455 3444443333333 2 2355432 1222
Q ss_pred --chHHHHHHHHHhCCC------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE
Q 004970 151 --GCMLQYALLHLAGYD------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI 210 (721)
Q Consensus 151 --~~~~~y~~l~l~G~~------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v 210 (721)
.++....+..+.|.. ++-..+|++|.++|.|+|+|+|.|+++. .++.++|+
T Consensus 95 ~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~---------~~~Va~~~ 165 (358)
T COG1071 95 ARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGT---------KDGVAVAF 165 (358)
T ss_pred ecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCC---------CCcEEEEE
Confidence 233334444444431 2334789999999999999999998863 14599999
Q ss_pred ECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccc-cHHHHHhhCCCeEEEeccCCCCHHHHHHHHHH
Q 004970 211 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE-NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE 289 (721)
Q Consensus 211 iGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~-~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~ 289 (721)
+|||+.++|.+||+||+|+.|+| |+||+++||+|+|+.+....... .+..+..+||+..++| ||+ |+.+++++.++
T Consensus 166 ~GDGat~qG~FhEalN~A~v~kl-Pvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~V-DG~-D~~avy~~~~~ 242 (358)
T COG1071 166 FGDGATNQGDFHEALNFAAVWKL-PVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRV-DGN-DVLAVYEAAKE 242 (358)
T ss_pred ecCCccccchHHHHHHHHHHhcC-CEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEE-CCc-CHHHHHHHHHH
Confidence 99999999999999999999999 89999999999999666634444 4555999999999999 999 99999999988
Q ss_pred HHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHH
Q 004970 290 AKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATR 333 (721)
Q Consensus 290 a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~ 333 (721)
|.+ ..++|+|||+.|+|-.||+.++++.+|. +++|.++++
T Consensus 243 A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YR----skeE~~~~~ 285 (358)
T COG1071 243 AVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYR----SKEEVEEWK 285 (358)
T ss_pred HHHHHHcCCCCEEEEEEEeecCCCCCCCCccccC----CHHHHHHHh
Confidence 865 2678999999999999999886656665 567766654
No 46
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.90 E-value=3.3e-21 Score=212.96 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=124.2
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
-..|+||+++|.|+|+|+|.++.+..++.. ..++.|||++|||++++|.+||+|++|+.|+| |+++||.||+|+++
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~---~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~L-PvIfVV~NN~yaig 266 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEE---SCDDVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIG 266 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhcccccc---CCCCEEEEEECCCccccChHHHHHHHHHHhCC-CEEEEEeCCCEeec
Confidence 467899999999999999999876433321 13789999999999999999999999999999 69999999999888
Q ss_pred cccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHH----HHhcCCCCEEEEEEEeeccCCCCCCCCCcccCCC
Q 004970 249 GDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE----AKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 323 (721)
Q Consensus 249 ~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~----a~~~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 323 (721)
.+.... ..+++.+++++|||+++.| ||+ |+.++++++++ +++ .++|++|++.|+|.+||+..+ ...+
T Consensus 267 ~~~~~~t~~~dia~~A~a~G~~~~~V-DG~-D~~av~~a~~~A~~~Ar~-g~gP~LIe~~tyR~~GHs~~D-~~~Y---- 338 (433)
T PLN02374 267 MSHLRATSDPEIWKKGPAFGMPGVHV-DGM-DVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD-PDEL---- 338 (433)
T ss_pred ceeeeccCCCCHHHHHHhcCCcEEEE-CCC-CHHHHHHHHHHHHHHHHH-cCCCEEEEEEEEecCCcCCCC-cccc----
Confidence 765433 3568999999999999998 999 99988865554 444 689999999999999998764 2222
Q ss_pred CChhhHHHHH
Q 004970 324 LGAKEVDATR 333 (721)
Q Consensus 324 ~~~~~~~~~~ 333 (721)
.++++++.++
T Consensus 339 R~~~e~~~~~ 348 (433)
T PLN02374 339 RDPAEKAHYA 348 (433)
T ss_pred CCHHHHHHHH
Confidence 3566666544
No 47
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.90 E-value=1.5e-21 Score=208.07 Aligned_cols=179 Identities=26% Similarity=0.251 Sum_probs=139.2
Q ss_pred CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc
Q 004970 166 SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245 (721)
Q Consensus 166 gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~ 245 (721)
++...+|+||+++|.|+|+|+|.++.+ .+++|||++|||++++|.++|+|++|+.++| |+++|++||+|
T Consensus 98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~----------~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~l-Pvi~vv~NN~~ 166 (293)
T cd02000 98 NFFGGNGIVGGQVPLAAGAALALKYRG----------EDRVAVCFFGDGATNEGDFHEALNFAALWKL-PVIFVCENNGY 166 (293)
T ss_pred CccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEeCCCccccchHHHHHHHHHhhCC-CEEEEEeeCCe
Confidence 456789999999999999999998764 2789999999999999999999999999999 68888889999
Q ss_pred ccccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccC
Q 004970 246 SIDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHG 321 (721)
Q Consensus 246 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~ 321 (721)
+++.+.... ..+++.+++++||++++.| ||+ |++++.+++++|.+ ..++|++|++.|.+.+||+..+++..+
T Consensus 167 ~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~-d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Y-- 242 (293)
T cd02000 167 AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGN-DVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRY-- 242 (293)
T ss_pred eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccC--
Confidence 998876533 3578999999999999998 999 99999888887753 257899999999999999965544332
Q ss_pred CCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHH
Q 004970 322 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAE 373 (721)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~ 373 (721)
.++++++..+ ..||+ ..|++ ++++|...++++.+..++
T Consensus 243 --r~~~e~~~~~-----~~dpi-------~~~~~~L~~~g~~~~~~~~~~~~~ 281 (293)
T cd02000 243 --RTKEEVEEWK-----KRDPI-------LRLRKYLIEAGILTEEELAAIEAE 281 (293)
T ss_pred --CCHHHHHHHh-----cCCHH-------HHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3466665433 23442 34544 345554445555444333
No 48
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.89 E-value=7.8e-21 Score=205.61 Aligned_cols=182 Identities=22% Similarity=0.189 Sum_probs=137.4
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
...|+||+++|.|+|+|+|.++.+.+++.. ..++.|+|++|||++++|.+||+|++|+.|+| |+++||.||+|+++
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~---~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-Pvifvv~NN~~~i~ 200 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEV---QPLRVTACFFGDGTTNNGQFFECLNMAVLWKL-PIIFVVENNQWAIG 200 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccC---CCCCEEEEEeCCchhhhcHHHHHHHHHhhcCC-CEEEEEEeCCeeee
Confidence 367999999999999999998876433221 12789999999999999999999999999999 69999999999988
Q ss_pred ccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHH----HHhcCCCCEEEEEEEeeccCCCCCCCCCcccCCC
Q 004970 249 GDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE----AKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 323 (721)
Q Consensus 249 ~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~----a~~~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 323 (721)
.+... ...+++.+++++||+..+.| ||+ |+.++++++++ +++ .++|++|++.|+|.+||+..+ ...|
T Consensus 201 ~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~-d~~av~~a~~~A~~~ar~-~~gP~lIev~tyR~~gHs~~D-~~~Y---- 272 (341)
T CHL00149 201 MAHHRSTSIPEIHKKAEAFGLPGIEV-DGM-DVLAVREVAKEAVERARQ-GDGPTLIEALTYRFRGHSLAD-PDEL---- 272 (341)
T ss_pred cchhheeCCccHHHHHHhCCCCEEEE-eCC-CHHHHHHHHHHHHHHHHh-CCCCEEEEEEEecCCCcCCCC-CccC----
Confidence 76643 23578999999999999998 999 99877755554 444 688999999999999999764 3333
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHH
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEY 374 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~ 374 (721)
.+++|++.+++ .||+ ..|++ ++++|-..++++.+..++.
T Consensus 273 R~~~e~~~~~~-----~DPi-------~~~~~~L~~~g~~~~~~~~~i~~e~ 312 (341)
T CHL00149 273 RSKQEKEAWVA-----RDPI-------KKLKSYIIDNELASQKELNKIQREV 312 (341)
T ss_pred CCHHHHHHHhc-----CCHH-------HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35667665542 3443 34544 3445544455554444443
No 49
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.88 E-value=4.9e-22 Score=200.23 Aligned_cols=132 Identities=20% Similarity=0.365 Sum_probs=113.0
Q ss_pred CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH---HHHHHHHHhcCCCeEEEEEEC
Q 004970 166 SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEASSLAGHLGLGKLIAFYDD 242 (721)
Q Consensus 166 gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~---~Eal~~a~~~~L~~li~Ivdd 242 (721)
|++.++|+||++++.|+|+|+.. + +.+|+|++||||++||.. ||+.+++..+++++|+.|+++
T Consensus 56 Gi~~~~G~LG~gLs~A~G~a~d~---------~-----d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~ 121 (227)
T cd02011 56 GSIHEGGELGYSLSHAYGAVFDN---------P-----DLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 121 (227)
T ss_pred CeeecccchhhHHHHHHHhhhcC---------C-----CcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEc
Confidence 77889999999999999998522 2 789999999999999995 999999999999999999999
Q ss_pred CCccccccccc--cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh-------------c----CCCCE--EEE
Q 004970 243 NHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA-------------V----TDKPT--LIR 301 (721)
Q Consensus 243 N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~-------------~----~~~P~--lI~ 301 (721)
|+|+|++++.. ...+++.++|++|||+++.| ||| |++++.++++++.+ + ..+|. +|+
T Consensus 122 Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~V-DG~-D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~ 199 (227)
T cd02011 122 NGYKISNPTILARISHEELEALFRGYGYEPYFV-EGD-DPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIV 199 (227)
T ss_pred CCCcccCCccccccCchhHHHHHHhCCCceEEE-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEE
Confidence 99999999974 34689999999999999998 999 99988887765532 1 12453 788
Q ss_pred EEEeeccCCCCC
Q 004970 302 VTTTIGFGSPNK 313 (721)
Q Consensus 302 ~~T~kg~G~~~~ 313 (721)
++|.||+.-|..
T Consensus 200 ~~~~kg~~~p~~ 211 (227)
T cd02011 200 LRTPKGWTGPKE 211 (227)
T ss_pred EeCCCCCCCCcc
Confidence 999999987643
No 50
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.88 E-value=1.3e-20 Score=200.95 Aligned_cols=178 Identities=29% Similarity=0.342 Sum_probs=135.7
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
..++++|..+|.|+|+|+|.|+.+ .+..++|++|||+.++|.++|+||+|+.|+| |+||||+||+|+|+
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~----------~~~v~v~~~GDga~~qG~~~EalN~A~~~~l-PvifvveNN~~ais 166 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRG----------KDGVVVCFFGDGATSQGDFHEALNLAALWKL-PVIFVVENNQYAIS 166 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTT----------SSEEEEEEEETGGGGSHHHHHHHHHHHHTTT-SEEEEEEEESEETT
T ss_pred eccccccccCccccchhHhhhhcC----------CceeEEEEecCcccccCccHHHHHHHhhccC-CeEEEEecCCcccc
Confidence 468999999999999999999765 3789999999999999999999999999999 78999999999999
Q ss_pred ccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCCC
Q 004970 249 GDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSAL 324 (721)
Q Consensus 249 ~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~ 324 (721)
++... ....++.+++++||++.+.| ||+ |+.++++++++|.+ ..++|+||++.|+|-+||+..+++..+.
T Consensus 167 t~~~~~~~~~~~~~~a~~~gip~~~V-DG~-D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr---- 240 (300)
T PF00676_consen 167 TPTEEQTASPDIADRAKGYGIPGIRV-DGN-DVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR---- 240 (300)
T ss_dssp EEHHHHCSSSTSGGGGGGTTSEEEEE-ETT-SHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS----
T ss_pred cCccccccccchhhhhhccCCcEEEE-CCE-eHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC----
Confidence 98864 44567888999999999998 999 99999999988865 3579999999999999999876444432
Q ss_pred ChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHH
Q 004970 325 GAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEY 374 (721)
Q Consensus 325 ~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~ 374 (721)
++++++.+.+. .|| +..|++ +++.|-..++++.+..++.
T Consensus 241 ~~~e~~~~~~~----~DP-------i~~~~~~L~~~g~~t~~~~~~i~~e~ 280 (300)
T PF00676_consen 241 SPEEYEEWWKK----RDP-------IKRFRRYLIEEGVLTEEELDAIEAEI 280 (300)
T ss_dssp HHHHHHHHHHC----T-H-------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CHHHHHHHHhc----CcH-------HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35666655432 233 345555 3455554555555544443
No 51
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.87 E-value=8.1e-20 Score=198.31 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=121.0
Q ss_pred cccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc
Q 004970 167 VQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246 (721)
Q Consensus 167 ie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~ 246 (721)
+-..++++|+++|.|+|+|+|.++++. +..++|++|||+++||.+||+||+|+.|+| |+++|++||+|+
T Consensus 133 ~~~~~~~vG~~~p~A~G~A~A~k~~~~----------~~v~v~~~GDGa~~eG~~~Ealn~A~~~~l-PvvfvveNN~~a 201 (362)
T PLN02269 133 FYGGHGIVGAQVPLGAGLAFAQKYNKE----------ENVAFALYGDGAANQGQLFEALNIAALWDL-PVIFVCENNHYG 201 (362)
T ss_pred ccccCchhhccccHHHHHHHHHHHhCC----------CCeEEEEECCCCcccCHHHHHHHHhhccCc-CEEEEEeCCCEe
Confidence 335789999999999999999998752 789999999999999999999999999999 699999999999
Q ss_pred cccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEEeeccCCCCCCCCCcccCCC
Q 004970 247 IDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 323 (721)
Q Consensus 247 i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 323 (721)
+++++... ...++.+ ++++++.+.| ||+ |+.++++++++|.+ +.++|++|++.|+|.+||+..++...+
T Consensus 202 ist~~~~~~~~~~~~~--~~~~~p~~~V-DG~-D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D~~~~Y---- 273 (362)
T PLN02269 202 MGTAEWRAAKSPAYYK--RGDYVPGLKV-DGM-DVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTY---- 273 (362)
T ss_pred ccCchhhhccchHHHH--hhcCCCeEEE-CCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCCCCccc----
Confidence 99876533 2334443 3457788898 999 99999999998765 127899999999999999876432222
Q ss_pred CChhhHHHHH
Q 004970 324 LGAKEVDATR 333 (721)
Q Consensus 324 ~~~~~~~~~~ 333 (721)
.+++|++.++
T Consensus 274 R~~~E~~~~~ 283 (362)
T PLN02269 274 RTRDEISGVR 283 (362)
T ss_pred CCHHHHHHHH
Confidence 3577777654
No 52
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87 E-value=9.5e-20 Score=197.61 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=123.2
Q ss_pred CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc
Q 004970 166 SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245 (721)
Q Consensus 166 gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~ 245 (721)
|+--.++++|.++|.|+|+|+|.++.+ .+++|+|++|||++++|.++|+|++|++++| |+++||.||+|
T Consensus 116 ~~~g~~~~vG~~lp~AiGaAla~k~~~----------~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~L-Pvi~Vv~NN~~ 184 (341)
T TIGR03181 116 NILPPNIPIGTQYLHAAGVAYALKLRG----------EDNVAVTYFGDGGTSEGDFYEALNFAGVFKA-PVVFFVQNNQW 184 (341)
T ss_pred CccCCCchHhcchhHHHhHHHHHHhhC----------CCCEEEEEecCCccccChHHHHHHHHhccCC-CEEEEEECCCC
Confidence 444578999999999999999998764 2789999999999999999999999999999 58888889999
Q ss_pred cccccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccC
Q 004970 246 SIDGDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHG 321 (721)
Q Consensus 246 ~i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~ 321 (721)
+++.+... ....++.+++++|||.++.| ||+ |..++++++++|.+ ..++|++|++.|+|.+||...+++..+
T Consensus 185 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~-d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~Y-- 260 (341)
T TIGR03181 185 AISVPRSKQTAAPTLAQKAIAYGIPGVQV-DGN-DVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRY-- 260 (341)
T ss_pred ccccchhhhhCCcCHHHHHhhCCCCEEEE-CCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccC--
Confidence 98876543 34578999999999999998 999 98876666655533 257999999999999999977544333
Q ss_pred CCCChhhHHHHH
Q 004970 322 SALGAKEVDATR 333 (721)
Q Consensus 322 ~~~~~~~~~~~~ 333 (721)
.+++|++.++
T Consensus 261 --R~~~e~~~~~ 270 (341)
T TIGR03181 261 --RTKEEEEEWR 270 (341)
T ss_pred --CCHHHHHHHh
Confidence 2456665544
No 53
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.86 E-value=1.1e-19 Score=195.10 Aligned_cols=149 Identities=26% Similarity=0.248 Sum_probs=125.0
Q ss_pred cccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc
Q 004970 167 VQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246 (721)
Q Consensus 167 ie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~ 246 (721)
+-...|+||+++|.|+|+|+|.++.+ .+++|+|++|||++++|.++|+|++|+.++| |+++||.||+|+
T Consensus 105 ~~~~~g~~G~~lp~AiGaa~A~~~~~----------~~~~vv~~~GDGa~~~g~~~ealn~A~~~~l-Pvi~vv~NN~yg 173 (315)
T TIGR03182 105 FYGGHGIVGAQVPLATGLAFANKYRG----------NDNVTACFFGDGAANQGQFYESFNMAALWKL-PVIFVIENNLYA 173 (315)
T ss_pred cccCcCcccccccHHHHHHHHHHHhC----------CCCEEEEEeCCCcccccHHHHHHHHhhccCc-CEEEEEEcCCcc
Confidence 33478999999999999999998764 2789999999999999999999999999999 688888888999
Q ss_pred ccccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCC
Q 004970 247 IDGDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGS 322 (721)
Q Consensus 247 i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 322 (721)
++++++. ....++.+++++||++++.| ||+ |+.++++++++|.+ ..++|++|++.|++.+||...+ ...+
T Consensus 174 ~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~-d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D-~~~Y--- 247 (315)
T TIGR03182 174 MGTSVERSSSVTDLYKRGESFGIPGERV-DGM-DVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSD-PAKY--- 247 (315)
T ss_pred ccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCC-cccc---
Confidence 9987653 34578999999999999998 999 99998888877754 2578999999999999998764 3233
Q ss_pred CCChhhHHHHH
Q 004970 323 ALGAKEVDATR 333 (721)
Q Consensus 323 ~~~~~~~~~~~ 333 (721)
.++++++.++
T Consensus 248 -r~~~e~~~~~ 257 (315)
T TIGR03182 248 -RSKEEVEEWR 257 (315)
T ss_pred -CCHHHHHHHH
Confidence 3566776654
No 54
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.80 E-value=4.8e-19 Score=172.91 Aligned_cols=144 Identities=26% Similarity=0.318 Sum_probs=118.9
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhC-CC-CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAG-YD-SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G-~~-gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
++|.++.|.|+...+.+.++.... .. ......|+||+++|.|+|++++.+ +++|||++|||+++
T Consensus 12 ~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~--------------~~~vv~~~GDG~~~ 77 (168)
T cd00568 12 EDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFM 77 (168)
T ss_pred CCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcCcHHh
Confidence 678999999999877766543311 11 345678999999999999999876 67899999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccc-----------cccccccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT-----------EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~-----------~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
+.++++++|.+++++.+++|+||+.|++.+.. ......|+.+++++|||++++| + +++++.++
T Consensus 78 --~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v---~-~~~~l~~a 151 (168)
T cd00568 78 --MTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRV---E-DPEDLEAA 151 (168)
T ss_pred --ccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHH
Confidence 58899999999999888888888888765433 1223468999999999999999 3 78999999
Q ss_pred HHHHHhcCCCCEEEEEEE
Q 004970 287 IKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 287 l~~a~~~~~~P~lI~~~T 304 (721)
++++++ .++|++|+++|
T Consensus 152 ~~~a~~-~~~p~~i~v~~ 168 (168)
T cd00568 152 LAEALA-AGGPALIEVKT 168 (168)
T ss_pred HHHHHh-CCCCEEEEEEC
Confidence 999987 78999999986
No 55
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.79 E-value=1.8e-18 Score=170.24 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=115.2
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.++.|.|...++...++....... + ....|+||+++|+|+|+++|.+ +++|||++|||+|+
T Consensus 14 ~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~--------------~~~vv~i~GDG~f~ 79 (172)
T cd02004 14 DDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARP--------------DKRVVLVEGDGAFG 79 (172)
T ss_pred CCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCC--------------CCeEEEEEcchhhc
Confidence 346677898877654433222211111 1 1246999999999999999876 78999999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc------------cccccHHHHHhhCCCeEEEeccCCCCHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI------------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 285 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~ 285 (721)
+.+++|.+|++++|+.+++|+|||+|++....+. ....|+.+++++||+++.+| + +++++.+
T Consensus 80 --~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~ 153 (172)
T cd02004 80 --FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV---T-TPEELKP 153 (172)
T ss_pred --CCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHH
Confidence 8889999999999999999999999988764432 13468999999999999999 3 8999999
Q ss_pred HHHHHHhcCCCCEEEEEEE
Q 004970 286 AIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 286 al~~a~~~~~~P~lI~~~T 304 (721)
+++++.+ .++|++|++.+
T Consensus 154 al~~a~~-~~~p~liev~i 171 (172)
T cd02004 154 ALKRALA-SGKPALINVII 171 (172)
T ss_pred HHHHHHH-cCCCEEEEEEc
Confidence 9999987 78999999986
No 56
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.77 E-value=3.9e-18 Score=172.52 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=119.7
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.+|.|.|..+.+...++....-.. + ....|+||+++|+|+|+++|.+ +++|||++|||+|+
T Consensus 14 ~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p--------------~~~vv~i~GDGsf~ 79 (205)
T cd02003 14 DDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKP--------------DREVYVLVGDGSYL 79 (205)
T ss_pred CCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCC--------------CCeEEEEEccchhh
Confidence 467888899988877655433221101 1 2356999999999999999876 78999999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc------------------------cccccHHHHHhhCCCeEEEe
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI------------------------AFTENVDKRFEGLGWHVIWV 273 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~------------------------~~~~~~~~~~~a~G~~~~~v 273 (721)
|...+|.+|.+++++.+++|+||++|++.+..+. ....|+.+++++||+++.+|
T Consensus 80 --m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 157 (205)
T cd02003 80 --MLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV 157 (205)
T ss_pred --ccHHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE
Confidence 7788999999999999999999999986542110 12368999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 274 KNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 274 ~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
+ ++++|.++++++.+ .++|++|++.|.+..
T Consensus 158 ---~-~~~el~~al~~a~~-~~gp~lIeV~v~~~~ 187 (205)
T cd02003 158 ---K-TIEELKAALAKAKA-SDRTTVIVIKTDPKS 187 (205)
T ss_pred ---C-CHHHHHHHHHHHHh-CCCCEEEEEEeeccc
Confidence 5 99999999999987 789999999997643
No 57
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.77 E-value=2.7e-18 Score=169.93 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=113.9
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
++++++.|.|...++...... .+ ...|+||+++|.|+|+++|.+ +++|||++|||+|+
T Consensus 25 ~~~iv~~D~G~~~~~~~~~~~-----~~-~~~g~mG~gl~~AiGa~la~p--------------~~~Vv~i~GDG~f~-- 82 (178)
T cd02008 25 KDSIVSGDIGCYTLGALPPLN-----AI-DTCTCMGASIGVAIGMAKASE--------------DKKVVAVIGDSTFF-- 82 (178)
T ss_pred CCeEEecCcCcccccccCChh-----hc-cccccCccHHHHHhhHHhhCC--------------CCCEEEEecChHHh--
Confidence 346677798976655421100 01 146999999999999999986 77899999999997
Q ss_pred hH-HHHHHHHHhcCCCeEEEEEECCCccccccccc----------cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHH
Q 004970 220 IA-NEASSLAGHLGLGKLIAFYDDNHISIDGDTEI----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 288 (721)
Q Consensus 220 ~~-~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~ 288 (721)
|. +++|.+|.+++++.+++|+|||+|++.+..+. ....|+.+++++|||++..|.+++ |++++.++++
T Consensus 83 ~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~-~l~~~~~al~ 161 (178)
T cd02008 83 HSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPY-DLKAIREELK 161 (178)
T ss_pred hccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCcc-CHHHHHHHHH
Confidence 66 89999999999999999999999987653321 123689999999999999997888 8888889999
Q ss_pred HHHhcCCCCEEEEEEE
Q 004970 289 EAKAVTDKPTLIRVTT 304 (721)
Q Consensus 289 ~a~~~~~~P~lI~~~T 304 (721)
++++ .++|++|+++.
T Consensus 162 ~a~~-~~gp~lI~v~~ 176 (178)
T cd02008 162 EALA-VPGVSVIIAKR 176 (178)
T ss_pred HHHh-CCCCEEEEEeC
Confidence 9987 78999999985
No 58
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.77 E-value=5.5e-18 Score=170.27 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.|.|....+...++....-. .+. ...|+||+++|+|+|+++|.+
T Consensus 3 ~l~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-- 70 (196)
T cd02013 3 PMHPRQVLRELEKA---MP-------EDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAP-- 70 (196)
T ss_pred CCCHHHHHHHHHHH---CC-------CCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCC--
Confidence 46666677777666 32 34567778998776554443332211 122 246999999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVD 260 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~ 260 (721)
+++|||++|||+|+ |...+|.+|.+++++.+++|+||++|++....+ .....|+.
T Consensus 71 ------------~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 71 ------------DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred ------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 78899999999999 899999999999999899999999998765321 11246899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEEeec
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIG 307 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~lI~~~T~kg 307 (721)
+++++||+++.+| + ++++|.++++++.+ ..++|++|++.+.+.
T Consensus 137 ~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~p~liev~v~~~ 181 (196)
T cd02013 137 KIAEACGAKGITV---D-KPEDVGPALQKAIAMMAEGKTTVIEIVCDQE 181 (196)
T ss_pred HHHHHCCCEEEEE---C-CHHHHHHHHHHHHhcCCCCCeEEEEEEeCcc
Confidence 9999999999999 4 89999999999875 147899999998654
No 59
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.76 E-value=7.3e-18 Score=173.18 Aligned_cols=151 Identities=24% Similarity=0.287 Sum_probs=125.6
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
..|.+|..+|.+.|+|+|.+|++. +..++++-|||+.++|++||++|.|.-|+| |+|||++||+|++.+
T Consensus 163 GnGIVGAQiPLGaGia~A~kY~~~----------~~v~~alYGDGAaNQGQ~fEa~NMA~LW~L-P~IFvCENN~yGMGT 231 (394)
T KOG0225|consen 163 GNGIVGAQIPLGAGIAFAQKYNRE----------DAVCFALYGDGAANQGQVFEAFNMAALWKL-PVIFVCENNHYGMGT 231 (394)
T ss_pred ccceeccCCCccccHHHHHHhccC----------CceEEEEeccccccchhHHHHhhHHHHhCC-CEEEEEccCCCccCc
Confidence 689999999999999999997752 788999999999999999999999999999 899999999999987
Q ss_pred ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCCCC
Q 004970 250 DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALG 325 (721)
Q Consensus 250 ~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~ 325 (721)
... ....+++.++- .| ++.+.| ||. |+-++++|.+.|++ +.++|.++++.|+|-.||+.++-...+ .+
T Consensus 232 s~~Rasa~teyykRG-~y-iPGl~V-dGm-dvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sY----Rt 303 (394)
T KOG0225|consen 232 SAERASASTEYYKRG-DY-IPGLKV-DGM-DVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSY----RT 303 (394)
T ss_pred chhhhhcChHHHhcc-CC-CCceEE-CCc-chhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCccc----ch
Confidence 765 33456666665 34 788998 999 99999999999877 348999999999999999977421222 25
Q ss_pred hhhHHHHHHhcCCCCCCC
Q 004970 326 AKEVDATRKNLGWPYEPF 343 (721)
Q Consensus 326 ~~~~~~~~~~l~~~~~p~ 343 (721)
.||++..++ .+||+
T Consensus 304 ReEiq~vR~----kRDPI 317 (394)
T KOG0225|consen 304 REEIQEVRQ----KRDPI 317 (394)
T ss_pred HHHHHHHHh----ccChH
Confidence 677777664 35664
No 60
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.75 E-value=5.1e-18 Score=175.47 Aligned_cols=139 Identities=18% Similarity=0.165 Sum_probs=119.1
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHI 245 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~ 245 (721)
...+++|..+|.|+|+|+|.++++. +....+..++|+.|||++ .+|.++|+||+|..|+++ ++|+|+.||+|
T Consensus 110 ~npS~l~~~~pva~G~A~A~k~~~~-----~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~ 184 (265)
T cd02016 110 PNPSHLEAVNPVVMGKTRAKQDYRG-----DGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQI 184 (265)
T ss_pred CCCcccccccCeehhHHHHHHHhcC-----CccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE
Confidence 4678999999999999999998752 001126788999999997 699999999999999995 49999999999
Q ss_pred ccccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCC
Q 004970 246 SIDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKA 314 (721)
Q Consensus 246 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~ 314 (721)
+++++.+.. ....+.+++++||++++.| ||+ |++++++++++|.+ ..++|++|++.|+|-+||...+
T Consensus 185 g~sT~~~~~~~~~~~~~~a~~~gip~~~V-dG~-D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 185 GFTTDPRDSRSSPYCTDVAKMIGAPIFHV-NGD-DPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred EEEecHHHhcccccHHHHHeecCCCEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcC
Confidence 999987644 4567889999999999998 999 99999999988865 3579999999999999998664
No 61
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.75 E-value=1.6e-17 Score=165.55 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=115.3
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.+|.|.|....+...++....... + ....|+||+++|.|+|+++|.+ +++|||++|||+|+
T Consensus 16 ~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~ 81 (186)
T cd02015 16 GDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARP--------------DKTVICIDGDGSFQ 81 (186)
T ss_pred CCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCC--------------CCeEEEEEcccHHh
Confidence 356777899976654433332211111 2 1235899999999999999876 78899999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 285 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~ 285 (721)
|.+++|.+|.+++++.+++|+||++|++....+ .....|+.+++++||+++.+| + +.+++.+
T Consensus 82 --~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~ 155 (186)
T cd02015 82 --MNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV---E-KPEELEA 155 (186)
T ss_pred --ccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe---C-CHHHHHH
Confidence 899999999999999999999999987643211 112468999999999999999 4 7899999
Q ss_pred HHHHHHhcCCCCEEEEEEEee
Q 004970 286 AIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 286 al~~a~~~~~~P~lI~~~T~k 306 (721)
+++++.+ .++|++|+|.|.+
T Consensus 156 al~~a~~-~~~p~liev~~~~ 175 (186)
T cd02015 156 ALKEALA-SDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHh-CCCCEEEEEEeCC
Confidence 9999987 7899999999964
No 62
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.75 E-value=1.5e-17 Score=167.98 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhC-CCCccc-CccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG-YDSVQV-TTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G-~~gie~-~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+.+..++..|... ++ +++.+|.|.|...++.-.++.... ...+.. ..|+||+++|+|+|+++|.+
T Consensus 7 ~l~~~~~~~~l~~~---l~-------~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p-- 74 (202)
T cd02006 7 PIKPQRVYEEMNKA---FG-------RDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADP-- 74 (202)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCC--
Confidence 46667777777665 33 456677798977655333322211 102222 46999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc------------c-----
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI------------A----- 254 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~------------~----- 254 (721)
+++|||++|||+|+ |+..+|.+|.+++|+.+++|+||++|++....+. .
T Consensus 75 ------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~ 140 (202)
T cd02006 75 ------------DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS 140 (202)
T ss_pred ------------CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence 78999999999999 9999999999999999999999999987543210 0
Q ss_pred ----ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeec
Q 004970 255 ----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 307 (721)
Q Consensus 255 ----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg 307 (721)
...|+.+++++||+++.+| . +.++|.++++++.+ ..++|++|++.+...
T Consensus 141 ~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 141 ELGGYGVDHVKVAEGLGCKAIRV---T-KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccCCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 1368999999999999999 4 89999999999974 258999999998654
No 63
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.75 E-value=2.4e-17 Score=164.38 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=115.1
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhC--CCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAG--YDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G--~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.+|.+.|..+..+|......+ .+.--+++|+||+++|+|+|+++|.+ +++|||++|||+|+
T Consensus 14 ~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p--------------~~~Vv~i~GDG~f~ 79 (188)
T cd03371 14 ATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTVGSMGHASQIALGIALARP--------------DRKVVCIDGDGAAL 79 (188)
T ss_pred CCCEEEECCCcchHHHHHhhcCCCCCccCceeecCccccHHHHHHHHHHhCC--------------CCcEEEEeCCcHHH
Confidence 456777899976643443321110 01112346999999999999999976 77899999999999
Q ss_pred hhhHHHHHHHHHhcCCC-eEEEEEECCCcccccccc-ccccccHHHHHhhCCCeE-EEeccCCCCHHHHHHHHHHHHhcC
Q 004970 218 EGIANEASSLAGHLGLG-KLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHV-IWVKNGNTGYDDIRAAIKEAKAVT 294 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~-~li~IvddN~~~i~~~~~-~~~~~~~~~~~~a~G~~~-~~v~dG~~d~~~l~~al~~a~~~~ 294 (721)
|.+++|.++++++++ .+++|+||++|++.+... .....|+.+++++||+.+ ..| + ++++|.++++++.+ .
T Consensus 80 --m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~~~~~v---~-~~~el~~al~~a~~-~ 152 (188)
T cd03371 80 --MHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEV---P-SLEELVAALAKALA-A 152 (188)
T ss_pred --hhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCceEEec---C-CHHHHHHHHHHHHh-C
Confidence 899999999999974 577778888887654322 223478999999999997 477 4 89999999999987 7
Q ss_pred CCCEEEEEEEeeccC
Q 004970 295 DKPTLIRVTTTIGFG 309 (721)
Q Consensus 295 ~~P~lI~~~T~kg~G 309 (721)
++|++|++.|.++++
T Consensus 153 ~~p~lIev~~~~~~~ 167 (188)
T cd03371 153 DGPAFIEVKVRPGSR 167 (188)
T ss_pred CCCEEEEEEecCCCC
Confidence 899999999988765
No 64
>PRK06163 hypothetical protein; Provisional
Probab=99.74 E-value=7.3e-17 Score=162.22 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHh
Q 004970 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 112 g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
+..+.-.+++..|... ++ +.|.+|.|.|......+.... .++--+..|+||+++|+|+|+++|.+
T Consensus 10 ~~~~~~~~~i~~l~~~---l~-------~~~~iv~D~G~~~~~~~~~~~---~~~~~~~~GsMG~glpaAiGaalA~p-- 74 (202)
T PRK06163 10 AKVMNRFDLTCRLVAK---LK-------DEEAVIGGIGNTNFDLWAAGQ---RPQNFYMLGSMGLAFPIALGVALAQP-- 74 (202)
T ss_pred CCCcCHHHHHHHHHHh---cC-------CCCEEEECCCccHHHHHHhhc---CCCCeEeecccccHHHHHHHHHHhCC--
Confidence 3456777777777665 33 467888899963322233321 11111247999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhc-CCCeEEEEEECCCcccccccc--ccccccHHHHHhhCCC
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGW 268 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~-~L~~li~IvddN~~~i~~~~~--~~~~~~~~~~~~a~G~ 268 (721)
+++|||++|||+|+ |..++|.+++++ +++.++||+||++|++.+... .....|+.+++++||+
T Consensus 75 ------------~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~ 140 (202)
T PRK06163 75 ------------KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGL 140 (202)
T ss_pred ------------CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCC
Confidence 78899999999999 999999999987 688899999999998754322 1234689999999999
Q ss_pred e-EEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 269 H-VIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 269 ~-~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
+ ..+| . +.++|.++++++.+ .++|++|++.+....
T Consensus 141 ~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 141 ENSHWA---A-DEAHFEALVDQALS-GPGPSFIAVRIDDKP 176 (202)
T ss_pred ceEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCC
Confidence 7 6788 4 89999999999987 789999999987543
No 65
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.74 E-value=2.5e-17 Score=162.80 Aligned_cols=144 Identities=24% Similarity=0.237 Sum_probs=113.1
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhC-CCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAG-YDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 218 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G-~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e 218 (721)
+++.++.|.|....+...++.... ...+....|+||+++|.|+|+++|.+ +++|||++|||+|+
T Consensus 16 ~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGaala~~--------------~~~vv~i~GDG~f~- 80 (178)
T cd02002 16 EDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRGGGLGWGLPAAVGAALANP--------------DRKVVAIIGDGSFM- 80 (178)
T ss_pred CCeEEEecCCcccHHHHHhcccCCCCCeeccCCccccchHHHHHHHHhcCC--------------CCeEEEEEcCchhh-
Confidence 456788899877765554443211 11222223999999999999999875 77899999999999
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------------------ccccccHHHHHhhCCCeEEEeccCCCCH
Q 004970 219 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------------------IAFTENVDKRFEGLGWHVIWVKNGNTGY 280 (721)
Q Consensus 219 G~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~ 280 (721)
|..++|.+|.+++++.+++|+||++|++....+ .....|+.+++++||+++..| . ++
T Consensus 81 -~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~ 155 (178)
T cd02002 81 -YTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV---E-TP 155 (178)
T ss_pred -ccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe---C-CH
Confidence 556899999999998888888888898764221 012368999999999999999 3 78
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 281 DDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 281 ~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
+++.++++++.+ .++|++|++++
T Consensus 156 ~el~~al~~a~~-~~~p~vi~v~v 178 (178)
T cd02002 156 EELDEALREALA-EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEC
Confidence 999999999987 78999999874
No 66
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.73 E-value=3.1e-17 Score=158.83 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=114.6
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
+++.+|.|.|..+.++|.... .++--+..|+||+++|.|+|+++|.+ ++|||++|||+|+
T Consensus 13 ~d~~vv~d~G~~~~~~~~~~~---~~~~~~~~gsmG~~lp~AiGa~~a~~---------------~~Vv~i~GDG~f~-- 72 (157)
T cd02001 13 GDTPIVSTTGYASRELYDVQD---RDGHFYMLGSMGLAGSIGLGLALGLS---------------RKVIVVDGDGSLL-- 72 (157)
T ss_pred CCCEEEeCCCHhHHHHHHhhc---CCCCEEeecchhhHHHHHHHHHhcCC---------------CcEEEEECchHHH--
Confidence 357778899987766643221 11212348999999999999999753 5799999999998
Q ss_pred hHHHHHHHHHhc-CCCeEEEEEECCCccccccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCC
Q 004970 220 IANEASSLAGHL-GLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 220 ~~~Eal~~a~~~-~L~~li~IvddN~~~i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P 297 (721)
|..++|.++.++ +++.+++|+||++|++.+.... ....|+.+++++||+++.++ + +++++.++++++.+ .++|
T Consensus 73 m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp 147 (157)
T cd02001 73 MNPGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSA---P-LLGGLGSEFAGLLA-TTGP 147 (157)
T ss_pred hcccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEc---C-CHHHHHHHHHHHHh-CCCC
Confidence 888999999999 5988888889999987653322 22579999999999999998 4 89999999999998 7899
Q ss_pred EEEEEEEee
Q 004970 298 TLIRVTTTI 306 (721)
Q Consensus 298 ~lI~~~T~k 306 (721)
++|++++.+
T Consensus 148 ~vi~v~i~~ 156 (157)
T cd02001 148 TLLHAPIAP 156 (157)
T ss_pred EEEEEEecC
Confidence 999999865
No 67
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.72 E-value=8.1e-17 Score=159.15 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=116.8
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.++.|.|....+...++....-.. + ....|+||+++|.|+|+++|.+ +++|||++|||+|+
T Consensus 14 ~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~ 79 (177)
T cd02010 14 DDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYP--------------DRKVVAVSGDGGFM 79 (177)
T ss_pred CCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHH
Confidence 456777899987655443333211101 1 2356899999999999999976 78999999999998
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAI 287 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al 287 (721)
|...+|.++.+++++.+++|+||++|++....+ .....|+.+++++||.++..| . +++++.+++
T Consensus 80 --m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al 153 (177)
T cd02010 80 --MNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRI---E-SADDLLPVL 153 (177)
T ss_pred --hHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHH
Confidence 999999999999999999999999998754211 112458999999999999999 4 899999999
Q ss_pred HHHHhcCCCCEEEEEEEee
Q 004970 288 KEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 288 ~~a~~~~~~P~lI~~~T~k 306 (721)
+++.+ .++|++|++.+..
T Consensus 154 ~~a~~-~~~p~liev~~~~ 171 (177)
T cd02010 154 ERALA-ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHh-CCCCEEEEEEecc
Confidence 99998 7899999999853
No 68
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.72 E-value=7.6e-17 Score=160.23 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHhh
Q 004970 115 MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHLA 192 (721)
Q Consensus 115 ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~~ 192 (721)
++...++..|... ++ +++.+|.|.|......+.+. ...... + ....|+||+++|.|+|+++|.+
T Consensus 2 l~~~~~~~~l~~~---l~-------~~~iiv~d~g~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~~aiGaala~~--- 67 (183)
T cd02005 2 LTQARLWQQVQNF---LK-------PNDILVAETGTSWFGALDLK-LPKGTRFISQPLWGSIGYSVPAALGAALAAP--- 67 (183)
T ss_pred CCHHHHHHHHHHh---cC-------CCCEEEECCchHHHhhhhcc-CCCCCEEEeccchhhHhhhHHHHHHHHHhCC---
Confidence 4445555566555 33 56788889987642222111 111001 1 2356999999999999999876
Q ss_pred hhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------ccccccHHHHHhh
Q 004970 193 ARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------IAFTENVDKRFEG 265 (721)
Q Consensus 193 ~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------~~~~~~~~~~~~a 265 (721)
+++|+|++|||+|+ |...+|.++.+++++.+++|+|||+|++..... .....|+.+++++
T Consensus 68 -----------~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a 134 (183)
T cd02005 68 -----------DRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEV 134 (183)
T ss_pred -----------CCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHH
Confidence 68999999999998 777889999999999999999999998754321 1124689999999
Q ss_pred CC----CeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 266 LG----WHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 266 ~G----~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
|| +++..| + +.+++.++|+++.+..++|++|++.|.+
T Consensus 135 ~G~~~~~~~~~v---~-~~~el~~al~~a~~~~~~p~liev~~~~ 175 (183)
T cd02005 135 FGGGGGGLSFRV---K-TEGELDEALKDALFNRDKLSLIEVILPK 175 (183)
T ss_pred hCCCccccEEEe---c-CHHHHHHHHHHHHhcCCCcEEEEEEcCc
Confidence 99 688888 5 9999999999998534789999999864
No 69
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.70 E-value=2e-17 Score=168.14 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=130.6
Q ss_pred cCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHH
Q 004970 147 SAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS 226 (721)
Q Consensus 147 s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~ 226 (721)
.+|.+.|.+|....+ ..-..+.++...+|.|+|.|.|.|.... .+..+||++|||+..||-++-++|
T Consensus 172 gkGrQMPvHyGs~el----nf~tissplatqlpqAvGaaYa~k~~~~---------nnac~V~yfGdG~aSEGD~HA~~N 238 (432)
T KOG1182|consen 172 GKGRQMPVHYGSKEL----NFVTISSPLATQLPQAVGAAYALKMRKK---------NNACAVTYFGDGAASEGDAHAAFN 238 (432)
T ss_pred ccccccccccCcccc----ceEEecchhhhccchhhhhhhhhhhccc---------CCeEEEEEecCCcccccchhhhhh
Confidence 467777777776544 2234568899999999999999986542 268899999999999999999999
Q ss_pred HHHhcCCCeEEEEEECCCccccccccccc-cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEE
Q 004970 227 LAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRV 302 (721)
Q Consensus 227 ~a~~~~L~~li~IvddN~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~ 302 (721)
+|+..+- |+|||+-||+|.|++++...+ ..-++.+-.+||+..++| ||+ |.-+++.|.++|++ ...+|++|++
T Consensus 239 fAAtle~-Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRV-DGn-D~lAvYnA~k~ARe~av~e~rPvliEa 315 (432)
T KOG1182|consen 239 FAATLEC-PVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRV-DGN-DALAVYNAVKEAREMAVTEQRPVLIEA 315 (432)
T ss_pred HHHHhCC-CEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEe-cCc-chHHHHHHHHHHHHHHHhccCchhhhh
Confidence 9999997 899999999999999997554 344677788999999999 999 99999999999876 3579999999
Q ss_pred EEeeccCCCCCCCCCccc
Q 004970 303 TTTIGFGSPNKANSYSVH 320 (721)
Q Consensus 303 ~T~kg~G~~~~~~~~~~H 320 (721)
.|++---|+.++++.++.
T Consensus 316 mtYRvGHHSTSDDSt~YR 333 (432)
T KOG1182|consen 316 MTYRVGHHSTSDDSTAYR 333 (432)
T ss_pred hhhhhccccCCCcccccc
Confidence 999864455556555554
No 70
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.70 E-value=2.5e-16 Score=155.87 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cc-ccCccccchhHHHHHHHHHHHHHhhh
Q 004970 116 GCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SV-QVTTGPLGQGMANAVGLALAEKHLAA 193 (721)
Q Consensus 116 s~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gi-e~~~G~lG~gl~~AvG~AlA~~~~~~ 193 (721)
....++..|... ++ +++.++.|.|....+...++...... .+ ....|+||+++|+|+|+++|.+
T Consensus 3 ~~~~~~~~l~~~---~~-------~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~---- 68 (178)
T cd02014 3 HPERVAAELNKR---AP-------DDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYP---- 68 (178)
T ss_pred CHHHHHHHHHhH---CC-------CCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCC----
Confidence 344555666654 32 34567779986654433232221110 12 2346999999999999999875
Q ss_pred hcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHHHH
Q 004970 194 RYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDKRF 263 (721)
Q Consensus 194 ~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~~~ 263 (721)
+++|+|++|||+|+ +...+|.++.+++++.+++|+||++|++....+ .....|+.+++
T Consensus 69 ----------~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la 136 (178)
T cd02014 69 ----------DRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIA 136 (178)
T ss_pred ----------CCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHH
Confidence 77899999999999 778889999999998889999999888643111 11246899999
Q ss_pred hhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 264 EGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 264 ~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++||+++..+ . +++++.++++++.+ .++|++|+++|.+
T Consensus 137 ~a~G~~~~~v---~-~~~el~~~l~~a~~-~~~p~liev~~~~ 174 (178)
T cd02014 137 EAMGIKGIRV---E-DPDELEAALDEALA-ADGPVVIDVVTDP 174 (178)
T ss_pred HHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 9999999998 4 88999999999988 7899999999854
No 71
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.69 E-value=6.1e-16 Score=153.26 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=110.0
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
+.+.+|.|.|.....+|.. ...++--+..|+||+++|+|+|+++|. +++|||++|||+|+
T Consensus 13 ~d~iiv~d~G~~~~~~~~~---~~~~~~~~~~gsmG~~lpaAiGa~la~---------------~~~Vv~i~GDG~f~-- 72 (181)
T TIGR03846 13 EDELVVSNIGVPSKELYAI---RDRPLNFYMLGSMGLASSIGLGLALAT---------------DRTVIVIDGDGSLL-- 72 (181)
T ss_pred CCCEEEecCCHhHHHHHhh---hcCCCCeeeccccccHHHHHHHHHHcC---------------CCcEEEEEcchHHH--
Confidence 4467777999765433322 111222234899999999999999985 35799999999999
Q ss_pred hHHHHHHHHHhcCC-CeEEEEEECCCcccccccc--ccccccHHHHHhhCCCeEEE-eccCCCCHHHHHHHHHHHHhcCC
Q 004970 220 IANEASSLAGHLGL-GKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIW-VKNGNTGYDDIRAAIKEAKAVTD 295 (721)
Q Consensus 220 ~~~Eal~~a~~~~L-~~li~IvddN~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~-v~dG~~d~~~l~~al~~a~~~~~ 295 (721)
|..++|.+++++++ +.+++|+||++|++.+... .....|+.+++++||+++.. | + +++++.++++ +.+ .+
T Consensus 73 m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v---~-~~~~l~~al~-a~~-~~ 146 (181)
T TIGR03846 73 MNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKV---A-DEEELRDALK-ALA-MK 146 (181)
T ss_pred hhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEe---C-CHHHHHHHHH-HHc-CC
Confidence 78899999999995 7778888888898865321 11256899999999999988 7 4 8999999997 776 78
Q ss_pred CCEEEEEEEeec
Q 004970 296 KPTLIRVTTTIG 307 (721)
Q Consensus 296 ~P~lI~~~T~kg 307 (721)
+|++|+|.+.++
T Consensus 147 ~p~li~v~~~~~ 158 (181)
T TIGR03846 147 GPTFIHVKVKPG 158 (181)
T ss_pred CCEEEEEEeCCC
Confidence 999999998654
No 72
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.68 E-value=4.1e-16 Score=153.92 Aligned_cols=143 Identities=18% Similarity=0.130 Sum_probs=114.1
Q ss_pred CCCeEEEcCCcchHHHHHHHHH-hCCCCcc--cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc
Q 004970 140 NRDRFVLSAGHGCMLQYALLHL-AGYDSVQ--VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 216 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l-~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~ 216 (721)
++..+|.|.|....+...++.. .....+- ...|.||+++|.|+|+++|. +++|||++|||+|
T Consensus 16 ~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~---------------~~~Vv~i~GDGsf 80 (175)
T cd02009 16 EGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT---------------DKPTVLLTGDLSF 80 (175)
T ss_pred CCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC---------------CCCEEEEEehHHH
Confidence 4566777999998776555443 2111221 23488999999999999984 3579999999999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc---------c----ccccHHHHHhhCCCeEEEeccCCCCHHHH
Q 004970 217 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI---------A----FTENVDKRFEGLGWHVIWVKNGNTGYDDI 283 (721)
Q Consensus 217 ~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~---------~----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l 283 (721)
+ |...+|.++.+++++.+++|+||++|++....+. . ...|+.+++++||+++.+| + +.+++
T Consensus 81 ~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el 154 (175)
T cd02009 81 L--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV---S-SLDEL 154 (175)
T ss_pred H--HhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC---C-CHHHH
Confidence 9 9999999999999999999999999886442210 1 1468999999999999999 4 89999
Q ss_pred HHHHHHHHhcCCCCEEEEEEE
Q 004970 284 RAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 284 ~~al~~a~~~~~~P~lI~~~T 304 (721)
.++|+++.+ .++|++|++.+
T Consensus 155 ~~al~~a~~-~~~p~lIev~v 174 (175)
T cd02009 155 EQALESALA-QDGPHVIEVKT 174 (175)
T ss_pred HHHHHHHHh-CCCCEEEEEeC
Confidence 999999998 78999999976
No 73
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.66 E-value=1.3e-15 Score=150.81 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=112.6
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
+++.||.|.|....++|.+. ..+.--+..|+||+++|.|+|+|+|.+ ++|||++|||+|+
T Consensus 13 ~~~~vv~d~G~~~~~~~~~~---~~~~~~~~~g~mG~~lp~AiGaala~~---------------~~vv~i~GDG~f~-- 72 (179)
T cd03372 13 KDELVVSNIGFPSKELYAAG---DRPLNFYMLGSMGLASSIGLGLALAQP---------------RKVIVIDGDGSLL-- 72 (179)
T ss_pred CCCeEEeCCCHhHHHHHHcc---CcccccccccchhhHHHHHHHHHhcCC---------------CcEEEEECCcHHH--
Confidence 34677779898766554442 111111247999999999999999853 4799999999998
Q ss_pred hHHHHHHHHHhcCC-CeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004970 220 IANEASSLAGHLGL-GKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 220 ~~~Eal~~a~~~~L-~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 296 (721)
|..+++.++.++++ +.+++|+|||+|++.+.... ....|+.+++++||+++..+ +| +++++.+++++++ ++
T Consensus 73 m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v-~~--~~~el~~al~~a~---~g 146 (179)
T cd03372 73 MNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVAT-VA--SEEAFEKAVEQAL---DG 146 (179)
T ss_pred hCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCeEEe-cC--CHHHHHHHHHHhc---CC
Confidence 77889999999996 46777789999998754321 12568999999999999998 53 6999999999886 68
Q ss_pred CEEEEEEEeeccC
Q 004970 297 PTLIRVTTTIGFG 309 (721)
Q Consensus 297 P~lI~~~T~kg~G 309 (721)
|++|+++|.++.+
T Consensus 147 p~lIev~~~~~~~ 159 (179)
T cd03372 147 PSFIHVKIKPGNT 159 (179)
T ss_pred CEEEEEEEcCCCC
Confidence 9999999987655
No 74
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.65 E-value=2.2e-15 Score=172.82 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--c-ccCccccchhHHHHHHHHHHHHHhh
Q 004970 116 GCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--V-QVTTGPLGQGMANAVGLALAEKHLA 192 (721)
Q Consensus 116 s~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--i-e~~~G~lG~gl~~AvG~AlA~~~~~ 192 (721)
...+++..|... .+ ++..|+.|.|...+|...++... .++ + ....|+||+|+|+|+|+++|.+
T Consensus 360 ~p~~v~~~l~~~---~~-------~daiv~~d~G~~~~w~a~~~~~~-~p~~~~~s~~~GtMG~glPaAIGAkla~P--- 425 (550)
T COG0028 360 KPQYVIKVLREL---LP-------DDAIVVTDVGQHQMWAARYFDFY-RPRRFLTSGGLGTMGFGLPAAIGAKLAAP--- 425 (550)
T ss_pred CHHHHHHHHHHh---CC-------CCeEEEeCCcHHHHHHHHhcccC-CCCcEEcCCCCccccchHHHHHHHHhhCC---
Confidence 467777777766 32 23455669999998776655443 222 1 2367999999999999999987
Q ss_pred hhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc----------cccc-HHH
Q 004970 193 ARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----------FTEN-VDK 261 (721)
Q Consensus 193 ~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~----------~~~~-~~~ 261 (721)
++.|||++|||+|+ |+.++|.+|.+++++.+++|+||+.|++....+.. .... +.+
T Consensus 426 -----------~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~k 492 (550)
T COG0028 426 -----------DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVK 492 (550)
T ss_pred -----------CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHH
Confidence 78999999999999 99999999999999889999999999877655421 1123 999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++||++..+| . +.++|.++|++|.+ .++|++|++.+..-
T Consensus 493 lAea~G~~g~~v---~-~~~el~~al~~al~-~~~p~lidv~id~~ 533 (550)
T COG0028 493 LAEAYGAKGIRV---E-TPEELEEALEEALA-SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHcCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 999999999999 3 89999999999998 89999999999864
No 75
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.64 E-value=2.7e-15 Score=163.40 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHh--CCCCcccCccccchhHHHHHHHHHHHHHhh
Q 004970 115 MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA--GYDSVQVTTGPLGQGMANAVGLALAEKHLA 192 (721)
Q Consensus 115 ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~--G~~gie~~~G~lG~gl~~AvG~AlA~~~~~ 192 (721)
++..+++..+... ++ ++|.+|.++|-.+..+|...... |.+.-..+.|+||+++|.|+|+|+|.+
T Consensus 172 ~~r~~ai~~i~~~---l~-------~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p--- 238 (361)
T TIGR03297 172 MTREEAIAAILDH---LP-------DNTVIVSTTGKTSRELYELRDRIGQGHARDFLTVGSMGHASQIALGLALARP--- 238 (361)
T ss_pred CCHHHHHHHHHHh---CC-------CCCEEEECCCCCcHHHHHhhcccccCCCCceEeechhhhHHHHHHHHHHHCC---
Confidence 7777777666655 33 57889999998876655553221 111122356999999999999999876
Q ss_pred hhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeE-EEEEECCCccccccc-cccccccHHHHHhhCCC-e
Q 004970 193 ARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISIDGDT-EIAFTENVDKRFEGLGW-H 269 (721)
Q Consensus 193 ~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~l-i~IvddN~~~i~~~~-~~~~~~~~~~~~~a~G~-~ 269 (721)
+++|||++|||+|+ |..++|.+++++++.|+ ++|+||+.|+..+.. ......|+.+++++||| .
T Consensus 239 -----------~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~ 305 (361)
T TIGR03297 239 -----------DQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAK 305 (361)
T ss_pred -----------CCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCce
Confidence 78899999999999 99999999999997555 555555566554322 12245789999999998 5
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccC
Q 004970 270 VIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 270 ~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G 309 (721)
++.| + +.++|.++++++++ .++|++|++++.+|.+
T Consensus 306 ~~~v---~-~~~eL~~al~~a~~-~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 306 VYEV---S-TLEELETALTAASS-ANGPRLIEVKVRPGSR 340 (361)
T ss_pred EEEe---C-CHHHHHHHHHHHHh-CCCcEEEEEEecCCCc
Confidence 6777 5 99999999999987 7899999999987643
No 76
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.64 E-value=1.3e-15 Score=160.14 Aligned_cols=196 Identities=24% Similarity=0.376 Sum_probs=123.2
Q ss_pred hCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCC-eEEEcCCcchHHHHHHHHHhC-----CC--------------
Q 004970 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRD-RFVLSAGHGCMLQYALLHLAG-----YD-------------- 165 (721)
Q Consensus 106 a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D-~~V~s~Gh~~~~~y~~l~l~G-----~~-------------- 165 (721)
+--||+|++.+..=+.+.|-+..=++| .| .+|...||+.+.+.+..++.| |+
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~~--------~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~ 116 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKYD--------LDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFR 116 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHHT--------B-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHhcC--------CceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHH
Confidence 458999999886644444443322233 34 456799999999999999888 22
Q ss_pred ------Cc-----------ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH---HHHH
Q 004970 166 ------SV-----------QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEAS 225 (721)
Q Consensus 166 ------gi-----------e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~---~Eal 225 (721)
|+ ....|.||++++.|.|+++-.+ |..|+|++|||+..+|.. |.+-
T Consensus 117 ~FS~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~DnP--------------dliv~~vvGDGEaETGplA~sWh~~ 182 (379)
T PF09364_consen 117 QFSFPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFDNP--------------DLIVACVVGDGEAETGPLAASWHSN 182 (379)
T ss_dssp HBTSTTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-T--------------T-EEEEEEETTGGGSHHHHHHGGGG
T ss_pred hCCCCCCCccccCcCCCCccCcCcchhhHHHHHhhcccCCC--------------CeEEEEEecCCcccCCccccccccc
Confidence 22 2368999999999999997655 889999999999998863 3333
Q ss_pred HHHHhcCCCeEEEEEECCCcccccccc--ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHH--------Hh---
Q 004970 226 SLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEA--------KA--- 292 (721)
Q Consensus 226 ~~a~~~~L~~li~IvddN~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a--------~~--- 292 (721)
.+..--.-..++-|+.-|+|.|+.+|- .+..+++.+.|+++||+.+.| +|+ |++++.+.+..+ ++
T Consensus 183 kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~V-eg~-dp~~~h~~ma~ald~a~~~I~~iq~ 260 (379)
T PF09364_consen 183 KFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFV-EGD-DPADMHQAMAAALDWALEEIRAIQK 260 (379)
T ss_dssp GSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEE-E----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEE-ecC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222234699999999999999984 445677999999999999998 998 987765544322 11
Q ss_pred --c----CCCCE--EEEEEEeeccCCCCC------CCCCcccCCCCC
Q 004970 293 --V----TDKPT--LIRVTTTIGFGSPNK------ANSYSVHGSALG 325 (721)
Q Consensus 293 --~----~~~P~--lI~~~T~kg~G~~~~------~~~~~~H~~~~~ 325 (721)
+ ..+|. +|+++|.||++.+.. +++...|..|+.
T Consensus 261 ~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl~ 307 (379)
T PF09364_consen 261 AARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPLP 307 (379)
T ss_dssp HHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SST
T ss_pred HHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeecccc
Confidence 1 12443 788999999998864 456677877763
No 77
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.64 E-value=2.5e-15 Score=150.63 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=108.4
Q ss_pred CCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCc-cChh
Q 004970 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEG 219 (721)
Q Consensus 141 ~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~-~~eG 219 (721)
++.++.|.|... + ...++ .+....|+||+++|+|+|+++|.+ +++|||++|||+ ++
T Consensus 27 d~ii~~D~G~~~-~--~~~~~----~~~~~~g~mG~glpaAiGa~la~p--------------~r~Vv~i~GDGs~f~-- 83 (193)
T cd03375 27 KVVVVSGIGCSS-R--LPYYF----NTYGFHTLHGRALAVATGVKLANP--------------DLTVIVVSGDGDLAA-- 83 (193)
T ss_pred CEEEEeCCChhc-e--ehhhc----cccchhhhhccHHHHHHHHHHhCC--------------CCeEEEEeccchHhh--
Confidence 456777999754 2 21111 112234899999999999999876 789999999999 56
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccc-c----------------ccccHHHHHhhCCCeEE---EeccCCCC
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-A----------------FTENVDKRFEGLGWHVI---WVKNGNTG 279 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-~----------------~~~~~~~~~~a~G~~~~---~v~dG~~d 279 (721)
|...+|.++.+++++.+++|+||+.|++.+.... . ...|+.++++++|+++. .| . +
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v---~-~ 159 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFS---G-D 159 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEec---C-C
Confidence 8889999999999999999999999987653221 0 12588999999999985 55 4 8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 280 YDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 280 ~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
++++.++++++.+ .++|++|++.+.
T Consensus 160 ~~el~~al~~al~-~~gp~vIev~~~ 184 (193)
T cd03375 160 IKQLKEIIKKAIQ-HKGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEEECC
Confidence 9999999999998 799999999864
No 78
>PRK07586 hypothetical protein; Validated
Probab=99.63 E-value=2e-15 Score=173.48 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=126.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-CcccCccccchhHHHHHHHHHHHHHh
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
..+....++..|... ++ +++.||.|.|....+...++....-. .+....|+||+|+|+|+|+++|.+
T Consensus 335 ~~i~~~~~~~~l~~~---l~-------~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA~p-- 402 (514)
T PRK07586 335 GALTPEAIAQVIAAL---LP-------ENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVACP-- 402 (514)
T ss_pred CCcCHHHHHHHHHHh---CC-------CCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHhCC--
Confidence 347777777777665 32 35677789998776665444332211 222235999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc-----------------ccc
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT-----------------EIA 254 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~-----------------~~~ 254 (721)
+++|+|++|||+|+ |+.++|.+|.+++|+.+++|+||++|++.... ...
T Consensus 403 ------------~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (514)
T PRK07586 403 ------------DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLD 468 (514)
T ss_pred ------------CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCC
Confidence 78999999999999 99999999999999999999999999865321 001
Q ss_pred -ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 255 -FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 255 -~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
...|+.+++++||+++.+| . +.++|.++++++.+ .++|++|++.+
T Consensus 469 ~~~~d~~~lA~a~G~~~~~V---~-~~~el~~al~~a~~-~~~p~liev~~ 514 (514)
T PRK07586 469 DPDLDWVALAEGMGVPARRV---T-TAEEFADALAAALA-EPGPHLIEAVV 514 (514)
T ss_pred CCCCCHHHHHHHCCCcEEEe---C-CHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 1358999999999999999 4 89999999999987 78999999873
No 79
>PRK12474 hypothetical protein; Provisional
Probab=99.63 E-value=3.1e-15 Score=171.99 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=124.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-CcccCccccchhHHHHHHHHHHHHHh
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
..+....++..|... ++ +++.++.|.|....+...++....-. .+....|+||+|+|+|+|+++|.+
T Consensus 339 ~~i~~~~~~~~l~~~---l~-------~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA~p-- 406 (518)
T PRK12474 339 GALNSLGVAQLIAHR---TP-------DQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVAAP-- 406 (518)
T ss_pred CCcCHHHHHHHHHHH---CC-------CCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHHCC--
Confidence 346666666666655 32 34567778887766544333221111 222345999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc---------------c-cc
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE---------------I-AF 255 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~---------------~-~~ 255 (721)
+++|+|++|||+|+ |+.++|.+|.+++|+.++||+||++|++..... . ..
T Consensus 407 ------------~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
T PRK12474 407 ------------DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLH 472 (518)
T ss_pred ------------CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCC
Confidence 78999999999999 999999999999999999999999998653210 0 01
Q ss_pred --cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 256 --TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 256 --~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
..|+.+++++||+++.+| . +.++|.++++++.+ .++|++|++.+
T Consensus 473 ~~~~d~~~lA~a~G~~~~rv---~-~~~eL~~al~~a~~-~~~p~liev~~ 518 (518)
T PRK12474 473 NPELNWMKIAEGLGVEASRA---T-TAEEFSAQYAAAMA-QRGPRLIEAMI 518 (518)
T ss_pred CCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 248999999999999999 4 89999999999987 78999999874
No 80
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.63 E-value=6e-16 Score=149.27 Aligned_cols=114 Identities=23% Similarity=0.334 Sum_probs=98.1
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
..|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.++.+++++.+++|+||++|++.+
T Consensus 26 ~~g~mG~~~~~aiGa~~a~p--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~~~ 89 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALARP--------------DRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGMTG 89 (153)
T ss_dssp TTT-TTTHHHHHHHHHHHST--------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHHHH
T ss_pred CccccCCHHHhhhHHHhhcC--------------cceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceEec
Confidence 56899999999999999865 78999999999999 889999999999999999999999997765
Q ss_pred ccc-----------c---cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 250 DTE-----------I---AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 250 ~~~-----------~---~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
..+ . ....|+.+++++||+++.+| +-. |++++.++++++.+ .++|++|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-~~~-~~~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV-TTP-DPEELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE-SCH-SHHHHHHHHHHHHH-SSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEE-ccC-CHHHHHHHHHHHHh-CCCcEEEEc
Confidence 432 1 23468999999999999998 433 45999999999997 899999986
No 81
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.62 E-value=2.1e-16 Score=147.02 Aligned_cols=110 Identities=26% Similarity=0.381 Sum_probs=91.0
Q ss_pred ccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc
Q 004970 595 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 674 (721)
Q Consensus 595 G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~ 674 (721)
|++.+.++ |.|++||+||+|++.|++|++.|+++||+++|||+++++|||++.+. .+++...++ +|+|++..
T Consensus 1 Gk~~~~~~----g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~---~~~~~~~~v-vvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLRE----GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALL---ESLKKTGRV-VVVEEHYK 72 (124)
T ss_dssp TEEEEEES----SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHH---HHSHHHHHH-HHSETCES
T ss_pred CEEEEEeC----CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchH---HHHHHhccc-cccccccc
Confidence 66777776 69999999999999999999999999999999999999999998874 323333344 89999975
Q ss_pred -ccchhhh---------c---CCceEEEe-ccCCCCCCHHHHHHHhCCCHHHH
Q 004970 675 -FGWEKIV---------G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAV 713 (721)
Q Consensus 675 -~G~~~~v---------~---~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~I 713 (721)
.|+++.+ . .+..++|+ |.|+++| .+++++.+|+|+++|
T Consensus 73 ~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 73 IGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp EEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred cccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 5665432 1 24467899 8999999 999999999999987
No 82
>PRK06154 hypothetical protein; Provisional
Probab=99.62 E-value=5.2e-15 Score=171.64 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEE-cCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL-SAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~-s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
.+....++..|... ++ ++|.+|+ |.|....+...++....... +. ...|+||+|+|.|+|+++|.+
T Consensus 380 ~l~p~~~~~~l~~~---l~-------~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p- 448 (565)
T PRK06154 380 PINPYRVVWELQHA---VD-------IKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARP- 448 (565)
T ss_pred CcCHHHHHHHHHHh---cC-------CCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCC-
Confidence 46776666666654 33 3466555 99988766544433222111 21 246999999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc---------ccccccHHH
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE---------IAFTENVDK 261 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~---------~~~~~~~~~ 261 (721)
+++|||++|||+|+ |+.++|.+|.+++|+.++||+||++|++..... .....|+.+
T Consensus 449 -------------~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~ 513 (565)
T PRK06154 449 -------------DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAA 513 (565)
T ss_pred -------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHH
Confidence 78999999999999 999999999999999999999999998654321 112358999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHh--cCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA--VTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~lI~~~T~kg 307 (721)
++++||.++.+| + +.++|.+++++|.+ ..++|++|++.+.+.
T Consensus 514 lA~a~G~~g~~V---~-~~~el~~al~~a~~~~~~~~p~lIev~v~~~ 557 (565)
T PRK06154 514 IARALGGYGERV---E-DPEMLVPALLRALRKVKEGTPALLEVITSEE 557 (565)
T ss_pred HHHHCCCeEEEE---C-CHHHHHHHHHHHHhhccCCCeEEEEEEeChH
Confidence 999999999999 4 89999999999975 257899999998653
No 83
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.61 E-value=5.3e-15 Score=172.38 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|-.. ++ +++.||.|.|....|...++....-..+. ...|+||+|+|+|+|+++|.+
T Consensus 368 ~l~p~~~~~~l~~~---l~-------~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p-- 435 (588)
T TIGR01504 368 PVKPQRVYEEMNKA---FG-------RDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADP-- 435 (588)
T ss_pred CcCHHHHHHHHHHh---CC-------CCCEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCC--
Confidence 46666666666544 32 35677789998776544443322111222 235999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc------------c-----
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI------------A----- 254 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~------------~----- 254 (721)
+++|||++|||+|+ |+.++|.+|.+++++.++||+||++|++....+. .
T Consensus 436 ------------dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~ 501 (588)
T TIGR01504 436 ------------KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSS 501 (588)
T ss_pred ------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeeccccccc
Confidence 78999999999999 9999999999999999999999999976532210 0
Q ss_pred ----ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEee
Q 004970 255 ----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 306 (721)
Q Consensus 255 ----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~k 306 (721)
...|+.+++++||.++.+| + +.++|.++|+++.+ ..++|++|+|.+.+
T Consensus 502 ~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 502 EVNGYGVDHVKVAEGLGCKAIRV---F-KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred cccCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 1368999999999999999 4 89999999999974 25899999999854
No 84
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.60 E-value=8.9e-15 Score=169.15 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.|.|....|...++....-..+ ....|+||+|+|.|+|+++|.+
T Consensus 358 ~i~~~~~~~~l~~~---l~-------~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~-- 425 (539)
T TIGR02418 358 HLHPLEIIKAMQAI---VT-------DDVTVTVDMGSHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALVRP-- 425 (539)
T ss_pred CcCHHHHHHHHHhh---CC-------CCCEEEECCcHHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHhCC--
Confidence 46666777777655 33 4678888998765544333221111121 2346899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|||++|||+|+ |+..+|.++.+++|+.++||+||++|++....+ .....|+.+
T Consensus 426 ------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (539)
T TIGR02418 426 ------------NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVK 491 (539)
T ss_pred ------------CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 78899999999999 999999999999999999999999998653211 112468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++||+++.+| + ++++|.++++++.+ .++|++|++.+.+.
T Consensus 492 lA~a~G~~~~~V---~-~~~eL~~al~~a~~-~~~p~lIev~v~~~ 532 (539)
T TIGR02418 492 YAESFGAKGLRV---E-SPDQLEPTLRQAME-VEGPVVVDIPVDYS 532 (539)
T ss_pred HHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 999999999999 4 99999999999987 78999999999653
No 85
>PRK08322 acetolactate synthase; Reviewed
Probab=99.59 E-value=3.6e-14 Score=164.39 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.|.|....+...++.......+ ....|+||+++|.|+|+++|.+
T Consensus 356 ~l~~~~~~~~l~~~---l~-------~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-- 423 (547)
T PRK08322 356 PMKPQRIVADLRKV---MP-------DDDIVILDNGAYKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHP-- 423 (547)
T ss_pred CcCHHHHHHHHHHH---CC-------CCeEEEECCcHHHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHhCC--
Confidence 46677666666655 32 4577888999776554433322111111 2246899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|||++|||+|+ |...+|.+|.+++++.+++|+||++|++....+ .....|+.+
T Consensus 424 ------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~ 489 (547)
T PRK08322 424 ------------DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVK 489 (547)
T ss_pred ------------CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHH
Confidence 78899999999999 999999999999999999999999998754211 112468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++++||+++.+| . +.++|.++++++.+ .++|++|+|.|.+
T Consensus 490 lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~v~~ 529 (547)
T PRK08322 490 YAESYGAKGYRV---E-SADDLLPTLEEALA-QPGVHVIDCPVDY 529 (547)
T ss_pred HHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 999999999999 4 89999999999987 7899999999865
No 86
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.59 E-value=1.2e-14 Score=169.35 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|-.. ++ +++.|+.|.|....+.-.++.......+ ....|+||+++|.|+|+++|.+
T Consensus 358 ~i~~~~~~~~l~~~---l~-------~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p-- 425 (574)
T PRK09124 358 PIHPQYLARQISEF---AA-------DDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHP-- 425 (574)
T ss_pred cCCHHHHHHHHHhh---cC-------CCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCC--
Confidence 35666555555544 22 4567777888766443222221111011 2356999999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|+|++|||+|+ |...+|.+|.+++|+.++||+||++|++....+ .....|+.+
T Consensus 426 ------------~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 491 (574)
T PRK09124 426 ------------GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAA 491 (574)
T ss_pred ------------CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHH
Confidence 78999999999999 999999999999999999999999998752110 112358999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++++||+++.+| . +.++|.++++++.+ .++|++|+|.+.+
T Consensus 492 lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~i~~ 531 (574)
T PRK09124 492 IAEACGITGIRV---E-KASELDGALQRAFA-HDGPALVDVVTAK 531 (574)
T ss_pred HHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 999999999999 4 89999999999987 7899999999864
No 87
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.59 E-value=9.3e-15 Score=170.02 Aligned_cols=163 Identities=16% Similarity=0.181 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.+|.|.|....+...++....-..+- ...|+||+|+|+|+|+++|.+
T Consensus 371 ~i~~~~~~~~l~~~---l~-------~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p-- 438 (572)
T PRK08979 371 RIKPQQVIETLYKL---TN-------GDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMP-- 438 (572)
T ss_pred CcCHHHHHHHHHHh---cC-------CCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCC--
Confidence 47777777777765 32 34567789998765543333222111221 235899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c-c-ccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I-A-FTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~-~-~~~~~ 259 (721)
+++|||++|||+|+ |+.++|.+|.+++|+.+++|+||++|++....+ . . ...|+
T Consensus 439 ------------~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK08979 439 ------------DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDF 504 (572)
T ss_pred ------------CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCH
Confidence 78999999999999 999999999999999999999999998653211 1 1 23689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.+..+| + +.++|.++++++.+..++|++|++.+.+
T Consensus 505 ~~~A~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lIev~i~~ 547 (572)
T PRK08979 505 AKIAEAYGHVGIRI---S-DPDELESGLEKALAMKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 99999999999999 4 9999999999998723899999999864
No 88
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=1.1e-14 Score=169.48 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-ccc-CccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQV-TTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie~-~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.+|.|.|....+...++....-.. +.. ..|+||+|+|+|+|+++|.+
T Consensus 371 ~i~~~~~~~~l~~~---l~-------~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p-- 438 (574)
T PRK07979 371 KIKPQAVIETLWRL---TK-------GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALP-- 438 (574)
T ss_pred CcCHHHHHHHHHhh---cC-------CCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCC--
Confidence 47777777777654 32 346677799976655433332211111 222 34999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc--ccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA--FTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~--~~~~~ 259 (721)
+++|||++|||+|+ |+.++|.+|.+++|+.++||+||++|++....+ .. ...|+
T Consensus 439 ------------~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK07979 439 ------------EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDF 504 (574)
T ss_pred ------------CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCH
Confidence 78899999999999 999999999999999999999999998743211 11 23689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc--CCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~lI~~~T~k 306 (721)
.+++++||.+..+| + +.++|.++++++.+. .++|++|++.+.+
T Consensus 505 ~~iA~a~G~~g~~v---~-~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 505 VRLAEAYGHVGIQI---S-HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 99999999999999 4 899999999999872 3899999999864
No 89
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.58 E-value=1.2e-14 Score=167.56 Aligned_cols=161 Identities=21% Similarity=0.183 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-CcccCccccchhHHHHHHHHHHHHHh
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
..+....++..|... ++ +++.++.|.|....+...++...... .+....|+||+++|.|+|+++|.+
T Consensus 357 ~~l~~~~~~~~l~~~---l~-------~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~p-- 424 (530)
T PRK07092 357 EPLSVAFVLQTLAAL---RP-------ADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALAQP-- 424 (530)
T ss_pred CCcCHHHHHHHHHHh---CC-------CCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHhCC--
Confidence 346666666666655 32 45677789887765544443322211 223346999999999999999875
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVD 260 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~ 260 (721)
+++|+|++|||+|+ |..++|.+|.+++|+.+++|+|||+|++....+ .....|+.
T Consensus 425 ------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 490 (530)
T PRK07092 425 ------------GRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFV 490 (530)
T ss_pred ------------CCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHH
Confidence 67999999999999 678999999999999889999999898643211 11346899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
+++++||+++..| + +.+++.++++++.+ .++|++|++.|
T Consensus 491 ~~a~~~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~~ 529 (530)
T PRK07092 491 ALARGYGCEAVRV---S-DAAELADALARALA-ADGPVLVEVEV 529 (530)
T ss_pred HHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEc
Confidence 9999999999999 4 89999999999987 78999999986
No 90
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.58 E-value=1e-14 Score=168.50 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cc-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SV-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gi-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.+|.|.|... +...++...... .+ ....|+||+|+|+|+|+++|.+
T Consensus 355 ~l~~~~~~~~l~~~---l~-------~~~iiv~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p-- 421 (539)
T TIGR03393 355 ALSQENFWQTLQTF---LR-------PGDIILADQGTSA-FGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACP-- 421 (539)
T ss_pred ccCHHHHHHHHHHh---cC-------CCCEEEEccCchh-hhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcCC--
Confidence 46677777777655 32 4678888998654 222222111110 11 2356999999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------ccccccHHHHHh
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------IAFTENVDKRFE 264 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------~~~~~~~~~~~~ 264 (721)
+++|+|++|||+|+ |+.++|.+|.+++++.+++|+||++|++..... .....|+.++.+
T Consensus 422 ------------~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~ 487 (539)
T TIGR03393 422 ------------NRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQ 487 (539)
T ss_pred ------------CCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHH
Confidence 78999999999999 999999999999999999999999998754221 122468999999
Q ss_pred hCCCe----EEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 265 GLGWH----VIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 265 a~G~~----~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
+||.+ +.+| . +.++|.++++++.+ .++|++|++.+.
T Consensus 488 a~G~~~~~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~i~ 527 (539)
T TIGR03393 488 ALSLDPQSECWRV---S-EAEQLADVLEKVAA-HERLSLIEVVLP 527 (539)
T ss_pred HcCCCCccceEEe---c-cHHHHHHHHHHHhc-cCCeEEEEEEcC
Confidence 99985 7888 4 89999999999997 789999999984
No 91
>PRK05858 hypothetical protein; Provisional
Probab=99.58 E-value=1.8e-14 Score=166.66 Aligned_cols=163 Identities=16% Similarity=0.077 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.||.|.|....+...++....-. .+. ...|+||+++|+|+|+++|.+
T Consensus 357 ~l~~~~~~~~l~~~---l~-------~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p-- 424 (542)
T PRK05858 357 PIHPMRVYGELAPL---LD-------RDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARP-- 424 (542)
T ss_pred CcCHHHHHHHHHHh---cC-------CCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCC--
Confidence 47777777777766 32 34566668877654443332221100 122 246999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc-ccccHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA-FTENVD 260 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~-~~~~~~ 260 (721)
+++|||++|||+|+ |+..+|.+|.+++++.+++|+||+.|++..... .. ...|+.
T Consensus 425 ------------~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~ 490 (542)
T PRK05858 425 ------------SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYD 490 (542)
T ss_pred ------------CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHH
Confidence 78999999999999 999999999999999999999999998754211 01 246899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
+++++||..+.+| . +.++|.++++++.+ .++|++|++.|.+.
T Consensus 491 ~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~~~~~ 532 (542)
T PRK05858 491 EVVRALGGHGELV---T-VPAELGPALERAFA-SGVPYLVNVLTDPS 532 (542)
T ss_pred HHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEEEECCC
Confidence 9999999999999 4 89999999999988 78999999999754
No 92
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.58 E-value=7e-14 Score=162.76 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... .+ +++.+|.|.|....+...++...+... + ....|+||+++|+|+|+++|.+
T Consensus 358 ~l~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p-- 425 (578)
T PRK06546 358 PIHPEYVASILDEL---AA-------DDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADP-- 425 (578)
T ss_pred CcCHHHHHHHHHHh---cc-------CCcEEEECCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCC--
Confidence 46677777777655 22 456677798977665544432222111 1 2356999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|+|++|||+|+ |...+|.+|.+++++.++||+||++|++....+ .....|+.+
T Consensus 426 ------------~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~ 491 (578)
T PRK06546 426 ------------GRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAA 491 (578)
T ss_pred ------------CCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHH
Confidence 78899999999999 888999999999999999999999998753110 123468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++||+++..| . ++++|.++++++.+ .++|++|+|.+.+.
T Consensus 492 lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~~ 532 (578)
T PRK06546 492 IAAALGIHAVRV---E-DPKDVRGALREAFA-HPGPALVDVVTDPN 532 (578)
T ss_pred HHHHCCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 999999999999 4 89999999999988 78999999998654
No 93
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.58 E-value=2.2e-14 Score=166.15 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=126.9
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHH
Q 004970 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 112 g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~ 189 (721)
...+....++..|... ++ +++.+|.|.|....+...++....... +. ...|+||+|+|.|+|+++|.+
T Consensus 349 ~~~~~~~~~~~~l~~~---~~-------~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p 418 (548)
T PRK08978 349 GEAIYAPALLKQLSDR---KP-------ADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARP 418 (548)
T ss_pred CCCcCHHHHHHHHHHh---CC-------CCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCC
Confidence 3456666677777665 32 457788899976654433322111111 11 235999999999999999976
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c--cccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I--AFTE 257 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~--~~~~ 257 (721)
+++|+|++|||+|+ |...+|.+|.+++++.+++|+||++|++....+ . ....
T Consensus 419 --------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (548)
T PRK08978 419 --------------DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNP 482 (548)
T ss_pred --------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCC
Confidence 77899999999999 999999999999999999999999998653211 1 1236
Q ss_pred cHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 258 NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 258 ~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
|+.+++++||+++.+| . +.++|.++++++.+ .++|++|++.+.+
T Consensus 483 d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~id~ 526 (548)
T PRK08978 483 DFVMLASAFGIPGQTI---T-RKDQVEAALDTLLN-SEGPYLLHVSIDE 526 (548)
T ss_pred CHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 8999999999999999 4 89999999999987 7899999999975
No 94
>PRK08611 pyruvate oxidase; Provisional
Probab=99.58 E-value=1.4e-14 Score=168.60 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+...+++..|... ++ +++.+|.|.|....+...++....... + ....|+||+|+|.|+|+++|.+
T Consensus 358 ~i~p~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p-- 425 (576)
T PRK08611 358 PIKPERVMAAIQKI---AD-------DDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFP-- 425 (576)
T ss_pred CcCHHHHHHHHhhh---cC-------CCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCC--
Confidence 46666666666544 32 456667799977654322221111101 1 2346999999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|||++|||+|+ |..++|.+|.+++++.++||+||++|++....+ .....|+.+
T Consensus 426 ------------~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~ 491 (576)
T PRK08611 426 ------------DRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAK 491 (576)
T ss_pred ------------CCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 78899999999999 999999999999999999999999998643211 112468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++||.++.+| + +.++|.++++++.+ .++|++|++.+.+.
T Consensus 492 lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIeV~vd~~ 532 (576)
T PRK08611 492 FAEACGGKGYRV---E-KAEELDPAFEEALA-QDKPVIIDVYVDPN 532 (576)
T ss_pred HHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCc
Confidence 999999999999 4 99999999999988 78999999999753
No 95
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.58 E-value=1.3e-14 Score=168.92 Aligned_cols=162 Identities=18% Similarity=0.238 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.+.|....+...++....... + ....|+||+|+|.|+|+++|.+
T Consensus 371 ~i~~~~~~~~l~~~---l~-------~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p-- 438 (572)
T PRK06456 371 KLKPWKIMKTIRQA---LP-------RDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARP-- 438 (572)
T ss_pred CcCHHHHHHHHHHh---CC-------CCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCC--
Confidence 46677777777655 32 345677788877654433322111101 1 1246999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc--ccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA--FTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~--~~~~~ 259 (721)
+++|||++|||+|+ |...+|.+|.+++|+.++||+||++|++....+ .. ...|+
T Consensus 439 ------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK06456 439 ------------DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDF 504 (572)
T ss_pred ------------CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCH
Confidence 78899999999999 999999999999999999999999998764221 01 23689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.++.+| + +.++|.++|+++.+ .++|++|+|.+.+
T Consensus 505 ~~~A~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~v~~ 546 (572)
T PRK06456 505 VKLAEAFGALGFNV---T-TYEDIEKSLKSAIK-EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHCCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 99999999999999 4 99999999999987 7899999999975
No 96
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.58 E-value=1.5e-14 Score=168.80 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.||.|.|....+...++....-.. +. ...|+||+|+|.|+|+++|.+
T Consensus 369 ~l~~~~~~~~l~~~---l~-------~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p-- 436 (591)
T PRK11269 369 PIKPQRVYEEMNKA---FG-------RDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADP-- 436 (591)
T ss_pred CcCHHHHHHHHHHh---cC-------CCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCC--
Confidence 47777777777654 32 346677788887655433332222111 22 236999999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc-------
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA------- 254 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~------- 254 (721)
+++|||++|||+|+ |...+|.+|.+++|+.++||+||++|++....+ ..
T Consensus 437 ------------~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 502 (591)
T PRK11269 437 ------------DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP 502 (591)
T ss_pred ------------CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence 78899999999999 999999999999999999999999987643211 00
Q ss_pred ----ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEee
Q 004970 255 ----FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 306 (721)
Q Consensus 255 ----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~k 306 (721)
...|+.+++++||.++.+| + ++++|.++++++.+ ..++|+||+|.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 503 ELNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 1268999999999999999 4 99999999999974 26899999999964
No 97
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=1.5e-14 Score=168.70 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ ++..++.|.|....+...++....-.. + ....|+||+|+|+|+|+++|.+
T Consensus 387 ~i~~~~~~~~l~~~---l~-------~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p-- 454 (587)
T PRK06965 387 IIKPQYVVEKLWEL---TD-------GDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHP-- 454 (587)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCC--
Confidence 46677777777654 32 234555688876654433332221111 2 1245899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc---------c-c--ccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE---------I-A--FTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~---------~-~--~~~~~ 259 (721)
+++|||++|||+|+ |+..+|.+|.+++++.+++|+||++|++....+ . . ...|+
T Consensus 455 ------------~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 520 (587)
T PRK06965 455 ------------DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDF 520 (587)
T ss_pred ------------CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCH
Confidence 78999999999999 999999999999999999999999997654211 1 1 23689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.++.++||+++.+| + +.++|.+++++|.+..++|++|+|.+.+
T Consensus 521 ~~iA~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lieV~i~~ 563 (587)
T PRK06965 521 VKLAEAYGHVGMRI---E-KTSDVEPALREALRLKDRTVFLDFQTDP 563 (587)
T ss_pred HHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99999999999999 4 9999999999998634789999999975
No 98
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.57 E-value=3.4e-14 Score=166.09 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.|+.|.|....+...++.......+ ....|+||+|+|+|+|+++|.+
T Consensus 365 ~l~p~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p-- 432 (597)
T PRK08273 365 PVNPQRVFWELSPR---LP-------DNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHP-- 432 (597)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCC--
Confidence 47777666666554 32 3456778999766554333222110011 2245899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhH-HHHHHHHHhc-----CCCeEEEEEECCCcccccccc-------------
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIA-NEASSLAGHL-----GLGKLIAFYDDNHISIDGDTE------------- 252 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~-~Eal~~a~~~-----~L~~li~IvddN~~~i~~~~~------------- 252 (721)
+++|+|++|||+|+ |+ .++|.+|.++ +|+.++||+||++|++....+
T Consensus 433 ------------~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~ 498 (597)
T PRK08273 433 ------------DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQ 498 (597)
T ss_pred ------------CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccc
Confidence 78899999999998 98 6999999999 899999999999997643210
Q ss_pred ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 253 IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 253 ~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.....|+.+++++||+.+.+| . +.++|.++++++.+ .++|++|+|.+..
T Consensus 499 ~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIeV~~~~ 547 (597)
T PRK08273 499 DLPDVPYARFAELLGLKGIRV---D-DPEQLGAAWDEALA-ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 012357999999999999999 4 89999999999988 7999999999864
No 99
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.57 E-value=1.9e-14 Score=168.04 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCe-EEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~-~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
.+....++..|... ++ ++|. ++.|.|....+...++....-. .+. ...|+||+|+|+|+|+++|.+
T Consensus 379 ~l~~~~~~~~l~~~---l~-------~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p- 447 (595)
T PRK09107 379 VIMPQYAIQRLYEL---TK-------GRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHP- 447 (595)
T ss_pred CcCHHHHHHHHHHh---CC-------CCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCC-
Confidence 46666666666554 33 3465 4568886654433332221110 121 235999999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc---------cc---cccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE---------IA---FTEN 258 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~---------~~---~~~~ 258 (721)
+++|||++|||+|+ |+..+|.+|.+++|+.++||+||++|++....+ .. ...|
T Consensus 448 -------------~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d 512 (595)
T PRK09107 448 -------------DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPD 512 (595)
T ss_pred -------------CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCC
Confidence 78999999999999 999999999999999999999999998654211 11 1368
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+.+++++||.++.+| . +.++|.++++++.+ .++|++|+|.+..
T Consensus 513 ~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 555 (595)
T PRK09107 513 FVKLAEAYGAVGIRC---E-KPGDLDDAIQEMID-VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 999999999999999 4 89999999999987 7899999999864
No 100
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.57 E-value=9e-14 Score=162.07 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--cc--cCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--VQ--VTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--ie--~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.+....++..|... ++ +++.+|.|.|....+...++.... ++ +- ...|+||+++|.|+|+++|.+
T Consensus 386 ~i~~~~v~~~l~~~---l~-------~~~ivv~d~g~~~~~~~~~~~~~~-~~~~~~~~~g~gsmG~~l~~aiGa~la~~ 454 (578)
T PRK06112 386 PIRPERIMAELQAV---LT-------GDTIVVADASYSSIWVANFLTARR-AGMRFLTPRGLAGLGWGVPMAIGAKVARP 454 (578)
T ss_pred CcCHHHHHHHHHHh---CC-------CCCEEEEcccHHHHHHHHhcCccC-CCceEECCCCccccccHHHHHHHHHhhCC
Confidence 46667777776655 32 457777899865544433322111 12 11 235899999999999999865
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------cccccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTEN 258 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~ 258 (721)
+++|||++|||+|+ |++++|++|.+++++.++||+||+.|++....+ .....|
T Consensus 455 --------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d 518 (578)
T PRK06112 455 --------------GAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVD 518 (578)
T ss_pred --------------CCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCC
Confidence 77899999999998 999999999999998888888888766543211 012468
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
+.+++++||+++.+| + +.++|.++++++.+ .++|++|+|++.+.
T Consensus 519 ~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~~ 562 (578)
T PRK06112 519 HAAIARACGCDGVRV---E-DPAELAQALAAAMA-APGPTLIEVITDPS 562 (578)
T ss_pred HHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEcCcc
Confidence 999999999999999 4 89999999999987 78999999999653
No 101
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.57 E-value=2.1e-14 Score=166.58 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cccCccccchhHHHHHHHHHHHHHhh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQVTTGPLGQGMANAVGLALAEKHLA 192 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie~~~G~lG~gl~~AvG~AlA~~~~~ 192 (721)
.+....++..|... ++ +++.++.|.|....+...++...+..+ +....|+||+|+|.|+|++++.+
T Consensus 366 ~~~~~~~~~~l~~~---l~-------~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p--- 432 (557)
T PRK08199 366 AVQLGEVMAWLRER---LP-------ADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLLFP--- 432 (557)
T ss_pred CcCHHHHHHHHHHh---CC-------CCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHhCC---
Confidence 46777777777655 32 356677788865554433333222212 22357999999999999999876
Q ss_pred hhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHHH
Q 004970 193 ARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVDK 261 (721)
Q Consensus 193 ~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~~ 261 (721)
+++|||++|||+|+ |.+++|.+|.+++++.+++|+||++|++....+ .....|+.+
T Consensus 433 -----------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 499 (557)
T PRK08199 433 -----------ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAA 499 (557)
T ss_pred -----------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHH
Confidence 78999999999999 999999999999998888888888888643211 112358999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++++||+++.+| + +.+++.++++++++ .++|++|+|.|.+
T Consensus 500 ~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~li~v~~~~ 539 (557)
T PRK08199 500 LARAYGGHGETV---E-RTEDFAPAFERALA-SGKPALIEIRIDP 539 (557)
T ss_pred HHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCH
Confidence 999999999999 4 89999999999987 7899999999965
No 102
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.57 E-value=2.2e-14 Score=166.15 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.+|.|.|....+...++....-...- ...|+||+|+|.|+|+++|.+
T Consensus 346 ~i~~~~~~~~l~~~---l~-------~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p-- 413 (549)
T PRK06457 346 PMKPQRVAYIVSQK---CK-------KDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVE-- 413 (549)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCC--
Confidence 46777777767655 32 45677779887765433232211111222 246999999999999999864
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
.+++|+|++|||+|+ |..++|.+|.+++|+.+++|+||++|++....+ .....|+.+
T Consensus 414 -----------~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~ 480 (549)
T PRK06457 414 -----------NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTK 480 (549)
T ss_pred -----------CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHH
Confidence 157899999999999 999999999999999999999999998653211 112468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++++||.++.+| . ++++|..+++++.+ .++|++|+|+|..
T Consensus 481 lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 520 (549)
T PRK06457 481 IAESIGFKGFRL---E-EPKEAEEIIEEFLN-TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 999999999999 4 89999999999988 7899999999964
No 103
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.57 E-value=2.4e-14 Score=166.76 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..+....++..|... ++ +...++.|.|....+...++....... +. ...|+||+|+|+|+|+++|.+
T Consensus 372 ~~l~~~~~~~~l~~~---l~-------~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p- 440 (574)
T PRK06466 372 GIIKPQQVVETLYEV---TN-------GDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFP- 440 (574)
T ss_pred CCcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCC-
Confidence 347777777777654 22 234555688876554333322211111 21 245899999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c--ccccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I--AFTEN 258 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~--~~~~~ 258 (721)
+++|+|++|||+|+ |+..+|.+|.+++|+.+++|+||++|++....+ . ....|
T Consensus 441 -------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d 505 (574)
T PRK06466 441 -------------DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPD 505 (574)
T ss_pred -------------CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCC
Confidence 78999999999999 999999999999999999999999998654211 1 12368
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+.+++++||.++.+| . +.++|.++|+++.+..++|++|++.+.+
T Consensus 506 ~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~p~lIev~i~~ 549 (574)
T PRK06466 506 FVKLAEAYGHVGIRI---T-DLKDLKPKLEEAFAMKDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 999999999999999 4 8999999999998722899999999975
No 104
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.56 E-value=2.3e-14 Score=167.10 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|-.. ++ +++.|+.|.|....+...++....-.. + ....|+||+|+|+|+|+++|.+
T Consensus 380 ~l~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p-- 447 (579)
T TIGR03457 380 WLHPRQVLRELEKA---MP-------EDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAP-- 447 (579)
T ss_pred CcCHHHHHHHHHHh---CC-------CCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCC--
Confidence 46667666666654 32 456777799987665433332211101 1 1235899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c-ccc-ccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I-AFT-ENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~-~~~-~~~ 259 (721)
+++|+|++|||+|+ |+..+|.+|.+++|+.++||+||++|++....+ . ... .|+
T Consensus 448 ------------~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~ 513 (579)
T TIGR03457 448 ------------DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSF 513 (579)
T ss_pred ------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCH
Confidence 78899999999999 999999999999999999999999998654221 1 112 489
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc--CCCCEEEEEEEeecc
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIRVTTTIGF 308 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~ 308 (721)
.+++++||.++.+| + ++++|.++|+++.+. .++|++|++.+.+-.
T Consensus 514 ~~lA~a~G~~g~~v---~-~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 514 AGIADAMGAKGVVV---D-KPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 99999999999999 4 999999999999752 478999999997643
No 105
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=3.8e-14 Score=164.68 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ ++..++.|.|....+...++....-.. +. ...|+||+++|.|+|+++|.+
T Consensus 364 ~i~~~~~~~~l~~~---l~-------~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p-- 431 (563)
T PRK08527 364 VLKPQWVIERVGEL---LG-------DDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVP-- 431 (563)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCC--
Confidence 46667777767655 32 345677799965544333322111111 22 235999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------------ccccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------------IAFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------------~~~~~~~ 259 (721)
+++|||++|||+|+ |+..+|.+|.+++|+.+++|+||++|++....+ .....|+
T Consensus 432 ------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 497 (563)
T PRK08527 432 ------------DKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDF 497 (563)
T ss_pred ------------CCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCH
Confidence 67899999999999 888999999999999999999999998754211 1123689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.++.+| + +.++|.++|+++.+ .++|++|+|.+.+
T Consensus 498 ~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~v~~ 539 (563)
T PRK08527 498 VKLAESFGGIGFRV---T-TKEEFDKALKEALE-SDKVALIDVKIDR 539 (563)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEECC
Confidence 99999999999999 4 89999999999988 7899999999975
No 106
>PRK08266 hypothetical protein; Provisional
Probab=99.56 E-value=2.2e-14 Score=166.00 Aligned_cols=148 Identities=22% Similarity=0.281 Sum_probs=114.2
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCC-ccc-CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDS-VQV-TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie~-~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.+|.|.|....+..-++....... +.. ..|+||+++|.|+|++++.+ +++|||++|||+|+
T Consensus 368 ~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p--------------~~~vv~v~GDG~f~ 433 (542)
T PRK08266 368 DDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANP--------------DRPVVSITGDGGFM 433 (542)
T ss_pred CCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCC--------------CCcEEEEEcchhhh
Confidence 345666677766544332222111112 222 35999999999999999875 78899999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
|.+++|.+|.+++|+.+++|+|||+|++....+ .....|+.+++++||.++..| . +.++|.++
T Consensus 434 --~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~a 507 (542)
T PRK08266 434 --FGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV---D-SPEELRAA 507 (542)
T ss_pred --ccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHH
Confidence 778999999999999999999999997643211 112368999999999999999 4 89999999
Q ss_pred HHHHHhcCCCCEEEEEEEeecc
Q 004970 287 IKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 287 l~~a~~~~~~P~lI~~~T~kg~ 308 (721)
++++.+ .++|++|++.|.++.
T Consensus 508 l~~a~~-~~~p~liev~i~~~~ 528 (542)
T PRK08266 508 LEAALA-HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHHh-CCCcEEEEEEecCCC
Confidence 999987 789999999998763
No 107
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.56 E-value=2.9e-14 Score=167.25 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=126.4
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..+....++..|... + +.+.|+.|.|....|...++..... .+- ...|+||+|+|+|+|+++|.+
T Consensus 385 ~~l~~~~v~~~l~~~---~--------~d~i~~~D~G~~~~~~~~~~~~~p~-~~~~s~~~g~mG~glpaAiGA~lA~p- 451 (616)
T PRK07418 385 GEIYPQEVLLAVRDL---A--------PDAYYTTDVGQHQMWAAQFLRNGPR-RWISSAGLGTMGFGMPAAMGVKVALP- 451 (616)
T ss_pred CCcCHHHHHHHHHhh---C--------CCcEEEECChHHHHHHHHhhhcCCC-eEEcCCCccccccHHHHHHHHHHhCC-
Confidence 346666666666544 2 3367788999876665444432211 222 246999999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c-c--ccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I-A--FTE 257 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~-~--~~~ 257 (721)
+++|||++|||+|+ |+..+|.++.+++|+.++||+||++|++....+ . . ...
T Consensus 452 -------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~ 516 (616)
T PRK07418 452 -------------DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMP 516 (616)
T ss_pred -------------CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCC
Confidence 78899999999999 999999999999999999999999998643211 0 1 236
Q ss_pred cHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 258 NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 258 ~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
|+.+++++||.++.+| + ++++|.+++++|.+ .++|+||++.+..
T Consensus 517 d~~~~A~a~G~~g~~V---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 560 (616)
T PRK07418 517 DFVKLAEAFGVKGMVI---S-ERDQLKDAIAEALA-HDGPVLIDVHVRR 560 (616)
T ss_pred CHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 8999999999999999 4 99999999999987 7899999999864
No 108
>PRK07524 hypothetical protein; Provisional
Probab=99.56 E-value=2.2e-14 Score=165.67 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=116.7
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCC-Cc--ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYD-SV--QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 216 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~-gi--e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~ 216 (721)
+.+.++.|.|..+.+...++....-. .+ ....|+||+++|.|+|+++|.+ +++|||++|||+|
T Consensus 372 ~~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p--------------~~~vv~i~GDG~f 437 (535)
T PRK07524 372 PDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAP--------------ERPVVCLVGDGGL 437 (535)
T ss_pred CCCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCC--------------CCcEEEEEcchHH
Confidence 34777889887765432222211110 12 2235999999999999999976 7899999999999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc---------c-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 217 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT---------E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 217 ~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~---------~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
+ |...+|.+|.+++|+.+++|+||++|++.... . .....|+.+++++||+++.+| . +.++|.++
T Consensus 438 ~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~a 511 (535)
T PRK07524 438 Q--FTLPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERV---A-DLEQLQAA 511 (535)
T ss_pred h--hhHHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEe---C-CHHHHHHH
Confidence 8 88899999999999999999999999754211 0 113468999999999999999 4 89999999
Q ss_pred HHHHHhcCCCCEEEEEEEeeccC
Q 004970 287 IKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 287 l~~a~~~~~~P~lI~~~T~kg~G 309 (721)
++++.+ .++|++|+|++.+-++
T Consensus 512 l~~a~~-~~~p~liev~~~~~~~ 533 (535)
T PRK07524 512 LRAAFA-RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHHh-CCCCEEEEEECCcccc
Confidence 999998 7999999999987543
No 109
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.56 E-value=4.2e-14 Score=164.62 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cc-ccCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SV-QVTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gi-e~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..+....++..|... +. +++.++.|.|-...+...++....-. .+ ....|+||+|+|.|+|+++|.+
T Consensus 357 ~~i~~~~~~~~l~~~---l~-------~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p- 425 (575)
T TIGR02720 357 GPLQAYQVYRAINKI---AE-------DDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYP- 425 (575)
T ss_pred CCcCHHHHHHHHHHh---CC-------CCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCC-
Confidence 357777777777655 32 45667789996665544332221110 12 1246999999999999999876
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc-----c-----ccccccHH
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT-----E-----IAFTENVD 260 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~-----~-----~~~~~~~~ 260 (721)
+++|+|++|||+|+ |+.++|.++.+++++.++||+|||+|++.... . .....|+.
T Consensus 426 -------------~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~ 490 (575)
T TIGR02720 426 -------------DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFA 490 (575)
T ss_pred -------------CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHH
Confidence 78999999999999 99999999999999999999999999864311 0 11246899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHH--hcCCCCEEEEEEEee
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK--AVTDKPTLIRVTTTI 306 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~--~~~~~P~lI~~~T~k 306 (721)
+++++||.++.+| . +.++|.++++++. + .++|++|++++.+
T Consensus 491 ~iA~a~G~~~~~v---~-~~~el~~al~~a~~~~-~~~p~liev~i~~ 533 (575)
T TIGR02720 491 KIAEGVGAVGFRV---N-KIEQLPAVFEQAKAIK-QGKPVLIDAKITG 533 (575)
T ss_pred HHHHHCCCEEEEe---C-CHHHHHHHHHHHHhhC-CCCcEEEEEEeCC
Confidence 9999999999999 4 8999999999998 6 6899999999965
No 110
>PRK07064 hypothetical protein; Provisional
Probab=99.56 E-value=3.3e-14 Score=164.68 Aligned_cols=145 Identities=24% Similarity=0.280 Sum_probs=113.3
Q ss_pred CCCeEEEcCCc-chHHHHHHHHHhC-CCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC
Q 004970 140 NRDRFVLSAGH-GCMLQYALLHLAG-YDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 217 (721)
Q Consensus 140 ~~D~~V~s~Gh-~~~~~y~~l~l~G-~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~ 217 (721)
+++.++.|.|- .+.+.-.++.... ...+....|+||+++|.|+|+++|.+ +++|+|++|||+|+
T Consensus 371 ~~~ii~~d~~~~~~~~~~~~~~~~~p~~~~~~~~g~mG~~lpaAiGa~lA~p--------------~~~vv~i~GDGsf~ 436 (544)
T PRK07064 371 RDGNWVRDVTISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALAGP--------------GRKTVGLVGDGGLM 436 (544)
T ss_pred CCCEEEeCCccchHHHHHHhcCccCCCceeccCCCccccccchhhhhhhhCc--------------CCcEEEEEcchHhh
Confidence 45777789873 3433211111111 00233345899999999999999976 78899999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
|...+|.+|.+++|+.+++|+||++|++....+ .....|+.+++++||+++.+| . +.++|.++
T Consensus 437 --m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~a 510 (544)
T PRK07064 437 --LNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRV---T-SADDFEAV 510 (544)
T ss_pred --hhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHH
Confidence 999999999999999999999999998654211 112468999999999999999 4 89999999
Q ss_pred HHHHHhcCCCCEEEEEEEe
Q 004970 287 IKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 287 l~~a~~~~~~P~lI~~~T~ 305 (721)
++++.+ .++|++|++.+.
T Consensus 511 l~~a~~-~~~p~lIeV~~~ 528 (544)
T PRK07064 511 LREALA-KEGPVLVEVDML 528 (544)
T ss_pred HHHHHc-CCCCEEEEEEcc
Confidence 999987 789999999986
No 111
>PLN02573 pyruvate decarboxylase
Probab=99.56 E-value=3e-14 Score=165.64 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--cccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--VQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--ie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+...+++..|-.. ++ +++.++.|.|.. .+.+..+....-.. .....|+||+|+|.|+|+++|.+
T Consensus 379 ~i~~~~~~~~l~~~---l~-------~d~iiv~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p-- 445 (578)
T PLN02573 379 PLRVNVLFKHIQKM---LS-------GDTAVIAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAP-- 445 (578)
T ss_pred ccCHHHHHHHHHHh---cC-------CCCEEEEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCC--
Confidence 46777777777655 32 457777899875 22222221111001 12346999999999999999986
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----ccccccHHHHHhhC
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGL 266 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~ 266 (721)
+++|||++|||+|+ |+..+|.+|.+++|+.++||+||++|++..... .....|+.+++++|
T Consensus 446 ------------~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~ 511 (578)
T PLN02573 446 ------------DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 511 (578)
T ss_pred ------------CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHh
Confidence 78999999999999 999999999999999999999999999764321 12346899999998
Q ss_pred C-----CeEEEeccCCCCHHHHHHHHHHHHh-cCCCCEEEEEEEe
Q 004970 267 G-----WHVIWVKNGNTGYDDIRAAIKEAKA-VTDKPTLIRVTTT 305 (721)
Q Consensus 267 G-----~~~~~v~dG~~d~~~l~~al~~a~~-~~~~P~lI~~~T~ 305 (721)
| +++.+| . +.++|.++++++.+ ..++|++|++.+.
T Consensus 512 G~~~g~~~~~~V---~-~~~eL~~al~~a~~~~~~~p~lieV~v~ 552 (578)
T PLN02573 512 HNGEGKCWTAKV---R-TEEELIEAIATATGEKKDCLCFIEVIVH 552 (578)
T ss_pred cCcCCceeEEEe---c-CHHHHHHHHHHHHhhCCCCcEEEEEEcC
Confidence 5 889999 4 89999999999974 2589999999985
No 112
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.56 E-value=3.1e-14 Score=146.79 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=108.0
Q ss_pred CCeEEEcCCcchHHH--HHHHHHhCC-C-CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc
Q 004970 141 RDRFVLSAGHGCMLQ--YALLHLAGY-D-SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 216 (721)
Q Consensus 141 ~D~~V~s~Gh~~~~~--y~~l~l~G~-~-gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~ 216 (721)
+..+|.|.|+...+. |...+.... . ..-...|+||+|+|.|+|++++.+ +++|||++|||++
T Consensus 27 d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~gsmG~GlpaAiGa~~a~p--------------~r~VV~i~GDG~~ 92 (235)
T cd03376 27 DTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENAAAVASGIEAALKALGRGK--------------DITVVAFAGDGGT 92 (235)
T ss_pred CeEEEeCCCcccccCCcCCCccccccceehhhcCHHHHHHHHHHHHHHhccCC--------------CCeEEEEEcCchH
Confidence 345556999887642 222111110 0 111245899999999999977755 7899999999995
Q ss_pred -ChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------------------ccccccHHHHHhhCCCeEEEe
Q 004970 217 -MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------------------IAFTENVDKRFEGLGWHVIWV 273 (721)
Q Consensus 217 -~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------------------~~~~~~~~~~~~a~G~~~~~v 273 (721)
+ |..++|.+|.+++++.+++|+||..|++.+... .....|+.++++++|++++..
T Consensus 93 ~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~ 170 (235)
T cd03376 93 AD--IGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVAT 170 (235)
T ss_pred Hh--hHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEE
Confidence 7 889999999999998888888888887422110 012358999999999998642
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 274 KNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 274 ~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
..-+ +++++.++++++.+ .++|++|++.+.
T Consensus 171 ~~v~-~~~el~~al~~a~~-~~gP~lIev~~~ 200 (235)
T cd03376 171 ASVA-YPEDLYKKVKKALS-IEGPAYIHILSP 200 (235)
T ss_pred EcCC-CHHHHHHHHHHHHh-CCCCEEEEEECC
Confidence 2336 99999999999998 789999999875
No 113
>PRK08617 acetolactate synthase; Reviewed
Probab=99.55 E-value=3.2e-14 Score=164.96 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|-.. ++ +++.++.|.|....+...++.......+ ....|+||+|+|+|+|+++|.+
T Consensus 364 ~i~~~~~~~~l~~~---l~-------~~~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p-- 431 (552)
T PRK08617 364 AVHPLRIIRALQDI---VT-------DDTTVTVDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRP-- 431 (552)
T ss_pred CcCHHHHHHHHHHh---cC-------CCcEEEeCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhhcC--
Confidence 35556666655544 32 4567777988655443333221111122 1246899999999999999876
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|+|++|||+|+ |...+|.+|.+++++.++||+||++|++....+ .....|+.+
T Consensus 432 ------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 497 (552)
T PRK08617 432 ------------GKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVK 497 (552)
T ss_pred ------------CCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHH
Confidence 78899999999999 999999999999999999999999998754211 112468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++||.++.+| + ++++|.++++++.+ .++|++|++.+.+.
T Consensus 498 lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~liev~~~~~ 538 (552)
T PRK08617 498 YAESFGAKGLRV---T-SPDELEPVLREALA-TDGPVVIDIPVDYS 538 (552)
T ss_pred HHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCcEEEEEEeccc
Confidence 999999999999 4 99999999999987 78999999998653
No 114
>PLN02470 acetolactate synthase
Probab=99.55 E-value=3.2e-14 Score=165.99 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|-.. .+ ++..++.|.|....+.-.++.......+ ....|+||+|+|.|+|+++|.+
T Consensus 376 ~l~~~~~~~~l~~~---~~-------~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p-- 443 (585)
T PLN02470 376 AIPPQYAIQVLDEL---TD-------GNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANP-- 443 (585)
T ss_pred CcCHHHHHHHHHhh---CC-------CCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCC--
Confidence 46666666555543 22 3345666888665443322221111111 1245999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc----------cccc------
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----------EIAF------ 255 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~----------~~~~------ 255 (721)
+++|+|++|||+|+ |+..+|.+|.+++|+.++||+||++|++.... ....
T Consensus 444 ------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~ 509 (585)
T PLN02470 444 ------------DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAE 509 (585)
T ss_pred ------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccc
Confidence 77899999999999 99999999999999999999999999764321 0110
Q ss_pred ---cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 256 ---TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 256 ---~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
..|+.+++++||.++.+| + +.++|.++++++.+ .++|++|+|.+..
T Consensus 510 ~~~~~d~~~iA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~i~~ 558 (585)
T PLN02470 510 AEIFPDFLKFAEGCKIPAARV---T-RKSDLREAIQKMLD-TPGPYLLDVIVPH 558 (585)
T ss_pred cCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 158999999999999999 4 89999999999988 7899999999964
No 115
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.55 E-value=2.6e-11 Score=140.40 Aligned_cols=475 Identities=16% Similarity=0.180 Sum_probs=280.5
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCccc
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISI 247 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~~i 247 (721)
-.||=.-=|..-|++-|.+-. .++.. +.-.-..+++-||++| .+|.++|.||++.-++++ -.|+|+.||++++
T Consensus 618 PSHLEavdpVleGivRakQd~---l~~g~-~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGf 693 (1228)
T PRK12270 618 PSHLEAVDPVLEGIVRAKQDR---LDKGE-EGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGF 693 (1228)
T ss_pred chhhhhcchHhhhhhhhhhhh---hcccc-cCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCccc
Confidence 445555557788888886532 22110 1113456888999997 589999999999999983 2889999999998
Q ss_pred ccccccccc-ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCC
Q 004970 248 DGDTEIAFT-ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSA 323 (721)
Q Consensus 248 ~~~~~~~~~-~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 323 (721)
.+....... .-..+++++++..++.| ||+ |++++.++.+.|.+ .-++|++|++.|+|-+||-..+++...
T Consensus 694 tT~p~~~Rss~y~td~ak~~~~PifhV-NGd-DpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmt---- 767 (1228)
T PRK12270 694 TTAPESSRSSEYATDVAKMIQAPIFHV-NGD-DPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMT---- 767 (1228)
T ss_pred ccCccccccchhhHHHHhhcCCCEEeE-CCC-CHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccC----
Confidence 876543222 23345667889999998 999 99999999988865 358999999999999999654433211
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCC--CC-----
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL--PA----- 395 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--p~----- 395 (721)
.+.-++ .+++ ...+.+.|.+ ++.+|....++..+.+..|..+..+...+....-..+. +.
T Consensus 768 -qP~mY~-~i~~----------~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~ 835 (1228)
T PRK12270 768 -QPLMYD-LIDA----------KRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESD 835 (1228)
T ss_pred -Cchhhh-hhhh----------cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCcccc
Confidence 111121 1111 1123456655 45566666666555555554332222222221111111 00
Q ss_pred -----cccc---------------cCCC-CCC--C-CcchhHH----------HHHHHH--HHHHHHhCCCeEEEeccCC
Q 004970 396 -----GWEK---------------ALPT-YTP--E-SPAEATR----------NLSQTC--LNALAKTLPGLLGGSADLA 439 (721)
Q Consensus 396 -----~~~~---------------~~p~-~~~--~-~~~~~~r----------~a~~~~--L~~l~~~~p~vv~~saDl~ 439 (721)
.+.. .+|+ |.. . .+...-| =+++.. +-.|+-+.-.|.+-+.|..
T Consensus 836 ~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsr 915 (1228)
T PRK12270 836 QGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEGTPVRLSGQDSR 915 (1228)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcCceeeeeccccC
Confidence 0110 1111 100 0 0000011 022332 2345555566778888864
Q ss_pred Ccccch-------------hcccccCcccCCCCc--cccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHH---HhHH
Q 004970 440 SSNMTL-------------LKMFGDFQKDTPEER--NVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFT---DYMR 500 (721)
Q Consensus 440 ~s~~~~-------------~~~~~~f~~~~~p~R--~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~---~r~~ 500 (721)
..+.+- +.-+..+.. -..+ +.|..++|-+.+|+=-|++.....-..++ ..|.+|. |-..
T Consensus 916 RGTF~QRHavl~D~~tg~e~~Pl~~l~~--~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiI 993 (1228)
T PRK12270 916 RGTFSQRHAVLIDRETGEEYTPLQNLSD--DQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTII 993 (1228)
T ss_pred CcceeeeeEEEecCCCCcccCcHhhcCC--CcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHH
Confidence 332210 001112211 1233 56999999999999999998875222333 3688886 4667
Q ss_pred HHHHHhhh----cCCcEEEEEecCCcccCCCCCCCCC--hhhhHHHhcCCCcEEEeeCCHHHHHHHHHH-HHHcCCCcEE
Q 004970 501 AAIRISAL----CEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKV-AVANRKRPSI 573 (721)
Q Consensus 501 dqir~~a~----~~~pV~~v~t~~g~~~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~-a~~~~~~P~~ 573 (721)
|+.-.++. |...|++.. +.|+ -..||-|.+ +|-.-.|.+=.||+|..|+++.....+||. ++....+|.+
T Consensus 994 DefIss~e~KWgQ~S~vvlLL-PHGy--EGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLv 1070 (1228)
T PRK12270 994 DEFISSGEAKWGQRSGVVLLL-PHGY--EGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLV 1070 (1228)
T ss_pred HHHHhhhHhhhccccceEEEc-cCCc--CCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeE
Confidence 77554442 467788876 4444 447899976 454445678899999999999999999995 6655678999
Q ss_pred EEEcCCCCCCCC-CCccccccCccEE-EecCC-C--CCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhH
Q 004970 574 LALSRQKLPHLA-GTSIDGVEKGAYI-ISDNS-S--GNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFD 648 (721)
Q Consensus 574 Irl~r~~~~~~~-~~~~~~~~~G~~~-v~~~~-~--~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld 648 (721)
+..||+-+..-. ..+.+.|.-|+++ ++... . +..-+=+|+++|-.....++..+ +...-++.||-+-.+.||.
T Consensus 1071 VfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQLyP~p 1148 (1228)
T PRK12270 1071 VFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQLYPLP 1148 (1228)
T ss_pred EEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhhCCCC
Confidence 999987653211 1122334456554 22211 0 01134578888998876554422 2234578999999999998
Q ss_pred HHHHHHhhhhc--ccCCceEEEEccccccc
Q 004970 649 EQSDAYKESVL--PAAVSARVSIEAGSTFG 676 (721)
Q Consensus 649 ~~~~~~~~~v~--~~~~~~~v~vE~~~~~G 676 (721)
.+.+. +.+- +....++.+-||-..-|
T Consensus 1149 ~~~l~--~~l~~ypna~e~~wvQeEP~NqG 1176 (1228)
T PRK12270 1149 RAELR--EALARYPNATEVVWVQEEPANQG 1176 (1228)
T ss_pred HHHHH--HHHHhCCCcceeEEeccCcccCC
Confidence 76542 2221 22224445566655544
No 116
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=4.9e-14 Score=163.72 Aligned_cols=162 Identities=12% Similarity=0.134 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +.+.+|.|.|....+...++....-. .+. ...|+||+|+|+|+|+++|.+
T Consensus 372 ~l~~~~~~~~l~~~---l~-------~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p-- 439 (570)
T PRK06725 372 ELKPQHVINLVSEL---TN-------GEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKE-- 439 (570)
T ss_pred CcCHHHHHHHHHhh---CC-------CCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhcC--
Confidence 47777777777665 32 34567778887654432222211110 122 245999999999999999875
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVD 260 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~ 260 (721)
+++|+|++|||+|+ |...+|.+|.+++|+.+++|+||++|++....+ .....|+.
T Consensus 440 ------------~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~ 505 (570)
T PRK06725 440 ------------EELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFV 505 (570)
T ss_pred ------------CCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHH
Confidence 78999999999998 889999999999999999999999998654211 11246899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+++++||.+..+| + +.+++.++++++.+ .++|++|++.+..
T Consensus 506 ~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~id~ 546 (570)
T PRK06725 506 KVAEAYGVKGLRA---T-NSTEAKQVMLEAFA-HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 9999999999999 4 89999999999988 7899999999864
No 117
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.55 E-value=4e-14 Score=164.72 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +.+.++.|.|....+...++...... .+. ...|+||+|+|.|+|+++|.+
T Consensus 374 ~~~~~~~~~~l~~~---l~-------~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p-- 441 (571)
T PRK07710 374 SIKPQKAIEMLYEI---TK-------GEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKP-- 441 (571)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCC--
Confidence 35556666666543 22 34566779887655443333221110 121 235899999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------c-cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------I-AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~-~~~~~~ 259 (721)
+++|||++|||+|+ |...+|.+|.+++++.+++|+||++|++....+ . ....|+
T Consensus 442 ------------~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 507 (571)
T PRK07710 442 ------------DETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDF 507 (571)
T ss_pred ------------CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCH
Confidence 78899999999999 888999999999999999999999998754211 1 124689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.++.+| + +.++|.++++++.+ .++|++|++.|..
T Consensus 508 ~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~vd~ 549 (571)
T PRK07710 508 VKLAEAYGIKGVRI---D-DELEAKEQLQHAIE-LQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 99999999999999 4 89999999999987 7899999999974
No 118
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.54 E-value=7.3e-14 Score=162.23 Aligned_cols=160 Identities=19% Similarity=0.242 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-C-cc-cCccccchhHHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-S-VQ-VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-g-ie-~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
.+....++..|... + +.+.+|.|.|....+...++.. ..+ . +. ...|+||+|+|+|+|+++|.+
T Consensus 365 ~l~~~~~~~~l~~~---~--------p~~iiv~d~g~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~glpaaiGa~la~p- 431 (561)
T PRK06048 365 VIKPQYVIEQIYEL---C--------PDAIIVTEVGQHQMWAAQYFKY-KYPRTFITSGGLGTMGYGFPAAIGAKVGKP- 431 (561)
T ss_pred CcCHHHHHHHHHhh---C--------CCcEEEEcCcHHHHHHHHhccc-CCCCeEEeCCCccccccHHHHHHHHHHhCC-
Confidence 46666666666543 2 3467778988765443322221 111 1 21 234899999999999999875
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc----------cc--ccccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----------EI--AFTEN 258 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~----------~~--~~~~~ 258 (721)
+++|+|++|||+|+ |+..+|.+|.+++++.+++|+||++|++.... .. ....|
T Consensus 432 -------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d 496 (561)
T PRK06048 432 -------------DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVD 496 (561)
T ss_pred -------------CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCC
Confidence 78999999999999 99999999999999999999999999765321 01 13468
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+.+++++||.++.+| + +.++|.++|+++.+ .++|++|++.+.+
T Consensus 497 ~~~lA~a~G~~~~~v---~-t~~el~~al~~a~~-~~~p~liev~~~~ 539 (561)
T PRK06048 497 FVKLAEAYGALGLRV---E-KPSEVRPAIEEAVA-SDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 999999999999999 4 89999999999987 7899999999864
No 119
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.54 E-value=5.3e-14 Score=164.22 Aligned_cols=164 Identities=14% Similarity=0.140 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--cc-cCccccchhHHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--VQ-VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--ie-~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
.+...+++..|... ++ +++.++.|.|..+.+...++... .++ +. ...|+||+|+|+|+|+++|.+
T Consensus 385 ~i~~~~~~~~l~~~---l~-------~d~ivv~d~G~~~~~~~~~~~~~-~p~~~~~~~~~g~mG~glp~aiGa~la~p- 452 (588)
T PRK07525 385 YMHPRQALREIQKA---LP-------EDAIVSTDIGNNCSIANSYLRFE-KGRKYLAPGSFGNCGYAFPAIIGAKIACP- 452 (588)
T ss_pred CcCHHHHHHHHHHh---CC-------CCcEEEECCcccHHHHHHhcccC-CCCeEEccccccccccHHHHHHHHHHhCC-
Confidence 57777777777766 32 45677779998766544333222 111 11 245999999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc--cccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA--FTEN 258 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~--~~~~ 258 (721)
+++|||++|||+|+ |...+|.+|.+++++.++||+||++|++....+ .. ...|
T Consensus 453 -------------~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d 517 (588)
T PRK07525 453 -------------DRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVS 517 (588)
T ss_pred -------------CCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCC
Confidence 78899999999999 889999999999999999999999997643211 11 1358
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc--CCCCEEEEEEEeecc
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV--TDKPTLIRVTTTIGF 308 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~ 308 (721)
+.+++++||.++.+| + +.++|.++++++.+. .++|++|+|.+.+-.
T Consensus 518 ~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 518 YAGIAEAMGAEGVVV---D-TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred HHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 999999999999999 4 899999999999862 258999999997543
No 120
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.53 E-value=8.1e-14 Score=162.00 Aligned_cols=162 Identities=20% Similarity=0.218 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.|+.|.|....+...++....-..+. ...|+||+++|+|+|+++|.+
T Consensus 369 ~l~~~~v~~~l~~~---l~-------~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~-- 436 (564)
T PRK08155 369 PLSHYGLINAVAAC---VD-------DNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANP-- 436 (564)
T ss_pred CcCHHHHHHHHHHh---CC-------CCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHhCC--
Confidence 46677676666655 32 34677789996554432222211110222 235899999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c--cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I--AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~--~~~~~~ 259 (721)
+++|||++|||+|+ |...+|.+|.+++++.+++|+||++|++....+ . ....|+
T Consensus 437 ------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~ 502 (564)
T PRK08155 437 ------------ERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINF 502 (564)
T ss_pred ------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCH
Confidence 77899999999999 888999999999999899999999998754221 1 123689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.+++.| . +.+++.++++++.+ .++|++|++.+..
T Consensus 503 ~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~~~~ 544 (564)
T PRK08155 503 MQIAAGFGLETCDL---N-NEADPQAALQEAIN-RPGPALIHVRIDA 544 (564)
T ss_pred HHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 99999999999999 4 89999999999987 7899999999864
No 121
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.53 E-value=7.4e-14 Score=162.89 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc-ccCccccchhHHHHHHHHHHHHHhh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV-QVTTGPLGQGMANAVGLALAEKHLA 192 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi-e~~~G~lG~gl~~AvG~AlA~~~~~ 192 (721)
.+....++..|... . +.+.++.|.|....|...++.......+ ....|+||+|+|+|+|+++|.+
T Consensus 382 ~l~~~~~~~~l~~~---~--------~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p--- 447 (585)
T CHL00099 382 SLSPQEVINEISQL---A--------PDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHP--- 447 (585)
T ss_pred CcCHHHHHHHHHhh---C--------CCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCC---
Confidence 46666666666543 1 3466777888765544333321111011 2346999999999999999976
Q ss_pred hhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c--c-ccccH
Q 004970 193 ARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I--A-FTENV 259 (721)
Q Consensus 193 ~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~--~-~~~~~ 259 (721)
+++|||++|||+|+ |+..+|.+|.+++|+.++||+||++|++....+ . . ...|+
T Consensus 448 -----------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~ 514 (585)
T CHL00099 448 -----------NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDF 514 (585)
T ss_pred -----------CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCH
Confidence 78999999999999 999999999999999999999999887643211 0 1 13689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.++.++||.++.+| + +.++|.++++++++ .++|.+|++.+..
T Consensus 515 ~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~v~~ 556 (585)
T CHL00099 515 VKLAEAYGIKGLRI---K-SRKDLKSSLKEALD-YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEECC
Confidence 99999999999999 4 89999999999988 7899999999964
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.53 E-value=5.9e-14 Score=164.56 Aligned_cols=164 Identities=17% Similarity=0.226 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..+....++..|... ++ +++.+|.|.|....+...++....-..+- ...|+||+|+|.|+|+++|.+
T Consensus 396 ~~l~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p- 464 (612)
T PRK07789 396 GSLAPQYVIERLGEI---AG-------PDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRP- 464 (612)
T ss_pred CCcCHHHHHHHHHhh---CC-------CCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCC-
Confidence 346666666666554 32 45677789986654433332221111111 245899999999999999976
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------cc------
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IA------ 254 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~------ 254 (721)
+++|+|++|||+|+ |+..+|.+|.+++|+.+++|+||++|++....+ ..
T Consensus 465 -------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~ 529 (612)
T PRK07789 465 -------------DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSH 529 (612)
T ss_pred -------------CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCC
Confidence 78899999999999 999999999999999999999999998653211 00
Q ss_pred ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 255 FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 255 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
...|+.+++++||..+.+| + +.++|.++|+++.+..++|++|++.+..
T Consensus 530 ~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~~~~~p~lIev~i~~ 577 (612)
T PRK07789 530 RIPDFVKLAEAYGCVGLRC---E-REEDVDAVIEKARAINDRPVVIDFVVGK 577 (612)
T ss_pred CCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 1258999999999999999 4 9999999999998733799999999964
No 123
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.53 E-value=6.5e-14 Score=162.71 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cccc-CccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQV-TTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~-~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.+|.|.|....+...++....-. .+.. ..|+||+|+|+|+|+++|.+
T Consensus 368 ~l~~~~~~~~l~~~---~~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p-- 435 (566)
T PRK07282 368 VVQPQAVIERIGEL---TN-------GDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANP-- 435 (566)
T ss_pred CcCHHHHHHHHHhh---cC-------CCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecC--
Confidence 46666666666654 32 34667789997665543332221100 1222 35999999999999999976
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------c-c-ccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------I-A-FTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~-~-~~~~~ 259 (721)
+++|||++|||+|+ |+..+|.+|.+++++.++||+||++|++....+ . . ...|+
T Consensus 436 ------------~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 501 (566)
T PRK07282 436 ------------DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDF 501 (566)
T ss_pred ------------CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCH
Confidence 78899999999999 999999999999999999999999998754211 1 1 24689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.++.+| . +.++|.++++. .. .++|++|++.+.+
T Consensus 502 ~~lA~a~G~~~~~v---~-~~~el~~al~~-~~-~~~p~lIeV~v~~ 542 (566)
T PRK07282 502 QLMAQAYGIKHYKF---D-NPETLAQDLEV-IT-EDVPMLIEVDISR 542 (566)
T ss_pred HHHHHHCCCEEEEE---C-CHHHHHHHHHH-hc-CCCCEEEEEEeCC
Confidence 99999999999999 4 89999999974 44 6899999999964
No 124
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.52 E-value=1.1e-13 Score=161.60 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cccc-CccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQV-TTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~-~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++..++ .+++.++.|.|+...+...++....-. .+.. ..|+||+|+|+|+|+++|.+
T Consensus 364 ~l~~~~~~~~l~~~---l~~~~~--~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p-- 436 (586)
T PRK06276 364 PIKPQRVIKELMEV---LREIDP--SKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKP-- 436 (586)
T ss_pred CcCHHHHHHHHHHh---ccccCC--CCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcC--
Confidence 46666666666654 321111 125667779997665543332211100 1211 34899999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc---------c-c--cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT---------E-I--AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~---------~-~--~~~~~~ 259 (721)
+++|||++|||+|+ |...+|.+|.+++++.+++|+||++|++.... . . ....|+
T Consensus 437 ------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ 502 (586)
T PRK06276 437 ------------DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDF 502 (586)
T ss_pred ------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 67899999999999 99999999999999999999999998764311 0 1 123689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||.++.+| + ++++|.++++++.+ .++|++|+|.+..
T Consensus 503 ~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 544 (586)
T PRK06276 503 VKLAESYGVKADRV---E-KPDEIKEALKEAIK-SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 99999999999999 4 99999999999987 7899999999964
No 125
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=1.4e-13 Score=160.44 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.|.|....+...++....... +. ...|+||+++|.|+|+++|.+
T Consensus 371 ~i~~~~~~~~l~~~---l~-------~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p-- 438 (574)
T PRK06882 371 VIKPQQVVEAIYRL---TN-------GDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHP-- 438 (574)
T ss_pred CcCHHHHHHHHHhh---cC-------CCeEEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcC--
Confidence 35666666666654 22 345667798876654332222211001 11 246999999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc----------cc--cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----------EI--AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~----------~~--~~~~~~ 259 (721)
+++|||++|||+|+ |..++|.+|.+++++.+++|+||++|++.... .. ....|+
T Consensus 439 ------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK06882 439 ------------EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDF 504 (574)
T ss_pred ------------CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCH
Confidence 77899999999998 88999999999999999999999988754321 11 123689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||+++++| + +.++|..+++++.+..++|++|+|.+.+
T Consensus 505 ~~la~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~liev~i~~ 547 (574)
T PRK06882 505 AKLAEAYGHVGIQI---D-TPDELEEKLTQAFSIKDKLVFVDVNVDE 547 (574)
T ss_pred HHHHHHCCCeEEEe---C-CHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 99999999999999 4 8999999999998733789999999975
No 126
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.52 E-value=1.1e-13 Score=160.72 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.|.|....+...++...... .+. ...|+||+++|.|+|+++|.+
T Consensus 362 ~~~~~~~~~~l~~~---l~-------~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~-- 429 (558)
T TIGR00118 362 GIKPQQVIEELSRV---TK-------DEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKP-- 429 (558)
T ss_pred CcCHHHHHHHHHhh---CC-------CCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhCC--
Confidence 46666666666544 32 35667778887654432222221110 121 235899999999999999875
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc----------c-c-cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----------E-I-AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~----------~-~-~~~~~~ 259 (721)
+++|+|++|||+|+ |...+|.+|.+++|+.+++|+||++|++.... . . ....|+
T Consensus 430 ------------~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~ 495 (558)
T TIGR00118 430 ------------ESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDF 495 (558)
T ss_pred ------------CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCH
Confidence 77899999999999 88889999999999989999999988754311 0 1 123689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++||+++..| + +.++|.++++++.+ .++|++|++.+.+
T Consensus 496 ~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~~~~ 537 (558)
T TIGR00118 496 VKLAEAYGIKGIRI---E-KPEELDEKLKEALS-SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 99999999999999 4 89999999999987 7899999999975
No 127
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.50 E-value=3.4e-13 Score=156.46 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=118.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEE-cCCcchHHHHHHHHHhCCC-Ccc-cCccccchhHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL-SAGHGCMLQYALLHLAGYD-SVQ-VTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~-s~Gh~~~~~y~~l~l~G~~-gie-~~~G~lG~gl~~AvG~AlA~~ 189 (721)
..+....++..|... +.. ++|.+|+ +.|+...+...++...... .+. ...|+||+|+|+|+|+++| +
T Consensus 364 ~~l~~~~~~~~l~~~---l~~------~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~ 433 (554)
T TIGR03254 364 SPMNYHGALEAIRDV---LKD------NPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-T 433 (554)
T ss_pred CCcCHHHHHHHHHHh---cCC------CCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-C
Confidence 357777777777655 320 2466666 4454443222221111100 121 2459999999999999997 3
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccc--------ccc--cccccH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD--------TEI--AFTENV 259 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~--------~~~--~~~~~~ 259 (721)
+++|||++|||+|+ |+.++|.+|.+++++.+++|+||++|....+ ... ....|+
T Consensus 434 --------------~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df 497 (554)
T TIGR03254 434 --------------GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARY 497 (554)
T ss_pred --------------CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCH
Confidence 56899999999999 9999999999999999999999998722100 011 134689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
.+++++||++..+| . +.++|.++++++.+ .++|++|+|.+.+.
T Consensus 498 ~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~id~~ 540 (554)
T TIGR03254 498 DKMMKAFGGVGYNV---T-TPDELKAALNEALA-SGKPTLINAVIDPS 540 (554)
T ss_pred HHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 99999999999999 4 99999999999987 78999999998653
No 128
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.50 E-value=1.7e-13 Score=157.99 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCC-CeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNR-DRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~-D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
.+...+++..|... ++. +. +.++.|.|....+.+ ..... .+. ...|+||+|+|+|+|+++|.+
T Consensus 355 ~i~p~~~~~~l~~~---l~~------~~~~ii~~D~G~~~~~~~---~~~~~-~~~~~~~~g~mG~glpaaiGa~lA~~- 420 (535)
T TIGR03394 355 PIAPMDIARAVNDR---FAR------HGQMPLAADIGDCLFTAM---DMDDA-GLMAPGYYAGMGFGVPAGIGAQCTSG- 420 (535)
T ss_pred CcCHHHHHHHHHHH---hCC------CCCEEEEEccCHHHHHHH---hcCCC-cEECcCccchhhhHHHHHHHHHhCCC-
Confidence 46666666666655 321 22 357789887433221 12211 111 245999999999999999842
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------ccccccHHHHHh
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------IAFTENVDKRFE 264 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------~~~~~~~~~~~~ 264 (721)
++++|++|||+|+ |+.++|.+|.+++++.++||+||++|++....+ .....|+.++++
T Consensus 421 --------------~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~ 484 (535)
T TIGR03394 421 --------------KRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAA 484 (535)
T ss_pred --------------CCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHH
Confidence 4578899999999 999999999999999999999999998765322 122468999999
Q ss_pred hCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 265 GLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 265 a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+||.+..+| + +.++|.++++++.+..++|++|++.+.+
T Consensus 485 a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lIev~i~~ 522 (535)
T TIGR03394 485 GMGGDGVRV---R-TRAELAAALDKAFATRGRFQLIEAMLPR 522 (535)
T ss_pred HcCCCceEe---C-CHHHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 999999999 4 8999999999998634568999999854
No 129
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.49 E-value=1.7e-13 Score=159.44 Aligned_cols=159 Identities=14% Similarity=0.039 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc----cCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ----VTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie----~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.+....++..|... ++ +.+.++.+.|....+. ..+.....+.. ...|+||+++|+|+|+++| +
T Consensus 375 ~i~~~~~~~~l~~~---l~-------~~~iv~~~~g~~~~~~--~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~ 441 (568)
T PRK07449 375 TFTEAKVAAALADL---LP-------EGGQLFVGNSLPVRDV--DAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-S 441 (568)
T ss_pred CccHHHHHHHHHHh---CC-------CCCeEEEECcHHHHHH--HHccCcCCCceEEecCCccchhhHHHHHHHHHhc-C
Confidence 46667777777766 32 3566778887654332 11111111111 2348899999999999998 5
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------------cccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------------IAFT 256 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------------~~~~ 256 (721)
+++|+|++|||+|+ |...+|.++.+++++.++||+||++|++..... ....
T Consensus 442 --------------~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (568)
T PRK07449 442 --------------AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHG 505 (568)
T ss_pred --------------CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcCCCC
Confidence 67899999999999 888999999999999999999999988543210 1124
Q ss_pred ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 257 ~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.|+.+++++||+++.+| + +.++|.++++++.+ .++|++|+|.+.+
T Consensus 506 ~df~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~-~~~p~lIev~id~ 550 (568)
T PRK07449 506 VDFAHAAAMYGLEYHRP---E-TWAELEEALADALP-TPGLTVIEVKTNR 550 (568)
T ss_pred CCHHHHHHHcCCCccCC---C-CHHHHHHHHHHHhc-CCCCEEEEEeCCh
Confidence 68999999999999998 4 89999999999987 7899999999853
No 130
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.49 E-value=4.9e-13 Score=155.59 Aligned_cols=162 Identities=23% Similarity=0.276 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEE-cCCcchHHHHHHHHHhCCC--Ccc-cCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL-SAGHGCMLQYALLHLAGYD--SVQ-VTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~-s~Gh~~~~~y~~l~l~G~~--gie-~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.+....++..|... ++. +.|.+|+ +.|+...+...++.. ..+ .+. ...|+||+|+|+|+|+++| +
T Consensus 372 ~l~~~~~~~~l~~~---l~~------~~d~iv~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~gsmG~glpaaiGa~la-~ 440 (569)
T PRK09259 372 PMNFYNALGAIRDV---LKE------NPDIYLVNEGANTLDLARNIIDM-YKPRHRLDCGTWGVMGIGMGYAIAAAVE-T 440 (569)
T ss_pred CcCHHHHHHHHHHH---hCC------CCCEEEEeCchHHHHHHHHhccc-CCCCceEeCCCCccccccHHHHHHHHhc-C
Confidence 47777777777655 321 2466555 555544332222111 111 122 2459999999999999998 3
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--ccc----c--ccc-c--ccccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SID----G--DTE-I--AFTEN 258 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i~----~--~~~-~--~~~~~ 258 (721)
+++|||++|||+|+ |+.++|.+|.+++++.++||+||+++ ... . ... . ....|
T Consensus 441 --------------~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d 504 (569)
T PRK09259 441 --------------GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHAR 504 (569)
T ss_pred --------------CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCC
Confidence 56899999999999 99999999999999999999999875 111 0 100 1 12468
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
+.+++++||+++.+| . +.++|.++++++.+ .++|++|+|.+.+-
T Consensus 505 ~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~id~~ 548 (569)
T PRK09259 505 YDKMMEAFGGVGYNV---T-TPDELRHALTEAIA-SGKPTLINVVIDPA 548 (569)
T ss_pred HHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 999999999999999 4 89999999999987 78999999999753
No 131
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.49 E-value=9.5e-14 Score=151.50 Aligned_cols=198 Identities=19% Similarity=0.216 Sum_probs=137.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH-hhCCCCCC--CCCCHHHHHHH-HHHhhhh-cCCCCCCCCCCCeEEEcCCcchHHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVE-KANSGHPG--LPMGCAPMGHI-LYDEVMR-YNPKNPYWFNRDRFVLSAGHGCMLQY 156 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~-~a~~GH~g--~~ls~~~l~~a-L~~~~l~-~~~~~p~~~~~D~~V~s~Gh~~~~~y 156 (721)
......|++|+..|...-...-- +-..+-+. ..-+-.+|.-- +|...=+ ++ +.|.++.++|......+
T Consensus 322 l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~-------p~dviiaetGtS~FG~~ 394 (557)
T COG3961 322 LSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLK-------PGDVIIAETGTSFFGAL 394 (557)
T ss_pred eeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCC-------CCCEEEEccccccccce
Confidence 66777888888888766532210 00111111 01111223322 2322112 23 68999999999884444
Q ss_pred HHHHHhCCCCc-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCe
Q 004970 157 ALLHLAGYDSV-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 235 (721)
Q Consensus 157 ~~l~l~G~~gi-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~ 235 (721)
.+....|..++ +.-+|++|+.+|+|+|.++|.+ ++|++.++|||++| ++.+++.+.-+|+|+|
T Consensus 395 ~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~--------------drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p 458 (557)
T COG3961 395 DIRLPKGATFISQPLWGSIGYTLPAALGAALAAP--------------DRRVILFIGDGSLQ--LTVQEISTMIRWGLKP 458 (557)
T ss_pred eeecCCCCeEEcccchhhcccccHhhhhhhhcCC--------------CccEEEEEcCchhh--hhHHHHHHHHHcCCCc
Confidence 44333332122 3579999999999999999987 89999999999999 9999999999999999
Q ss_pred EEEEEECCCccccccccc-------cccccHHHHHhhCC---CeE-EEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 236 LIAFYDDNHISIDGDTEI-------AFTENVDKRFEGLG---WHV-IWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 236 li~IvddN~~~i~~~~~~-------~~~~~~~~~~~a~G---~~~-~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
++||+||+||.|...... ...-|+.++.++|| ++. ..+ +..+++..+++.+.+..+++++|||+.
T Consensus 459 ~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~i~lIEv~l 534 (557)
T COG3961 459 IIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRA----TTGEELALALDVAFANNDRIRLIEVML 534 (557)
T ss_pred EEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCceEEEee----cChHHHHHHHHHHhcCCCceEEEEEec
Confidence 999999999998876531 23356777777776 444 233 367888999998887677999999997
Q ss_pred ee
Q 004970 305 TI 306 (721)
Q Consensus 305 ~k 306 (721)
.+
T Consensus 535 p~ 536 (557)
T COG3961 535 PV 536 (557)
T ss_pred Cc
Confidence 64
No 132
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.46 E-value=4.9e-13 Score=140.27 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=106.9
Q ss_pred CCCeEE-EcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh
Q 004970 140 NRDRFV-LSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 218 (721)
Q Consensus 140 ~~D~~V-~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e 218 (721)
++|.+| .+.|....+ ..++. .....+.+|.++|+|+|+++|.+ +++|||++|||+++
T Consensus 34 p~d~ivvsdiG~~~~~-~~~~~------~~~~~~~mG~alp~AiGaklA~p--------------d~~VVai~GDG~~~- 91 (280)
T PRK11869 34 PRQVVIVSGIGQAAKM-PHYIN------VNGFHTLHGRAIPAATAVKATNP--------------ELTVIAEGGDGDMY- 91 (280)
T ss_pred CCCEEEEeCchHhhhH-HHHcc------CCCCCcccccHHHHHHHHHHHCC--------------CCcEEEEECchHHh-
Confidence 455544 476765542 11111 11234669999999999999876 78899999999986
Q ss_pred hhH-HHHHHHHHhcCCCeEEEEEECCCcccccccc-----------------ccccccHHHHHhhCCCeEEEeccCCCCH
Q 004970 219 GIA-NEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------------IAFTENVDKRFEGLGWHVIWVKNGNTGY 280 (721)
Q Consensus 219 G~~-~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~ 280 (721)
+. .++|.+|.+++++.+++|+||+.|++.+... .....|+.++++++|..++...+-. ++
T Consensus 92 -~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~-~~ 169 (280)
T PRK11869 92 -AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSG-DI 169 (280)
T ss_pred -hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCC-CH
Confidence 44 7899999999999999999999887543111 0123589999999999988832224 89
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 281 DDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 281 ~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
+++.+++++|.+ .++|++|++.+.
T Consensus 170 ~~l~~~i~~Al~-~~Gp~lIeV~~p 193 (280)
T PRK11869 170 EETKEILKEAIK-HKGLAIVDIFQP 193 (280)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEECC
Confidence 999999999998 889999999975
No 133
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.45 E-value=2.3e-13 Score=140.55 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=107.1
Q ss_pred CC-eEEEcCCcchHHHHHHHHHhCCC--Cccc---CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCC
Q 004970 141 RD-RFVLSAGHGCMLQYALLHLAGYD--SVQV---TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 214 (721)
Q Consensus 141 ~D-~~V~s~Gh~~~~~y~~l~l~G~~--gie~---~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG 214 (721)
+| .+|.|.|+..++...+.. ..++ .+.. ..|+||+|+|.|+|+++|.-... . .+++|||++|||
T Consensus 28 ~d~ivv~d~G~~~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~----~-----p~~~Vv~i~GDG 97 (237)
T cd02018 28 EDTVIANSTGCSSVYASTAPF-NSWAVPWVNSLFEDANAVASGLKRGLKARFPKDREL----D-----KKKDVVVIGGDG 97 (237)
T ss_pred CCEEEEeCCCccceecccCcC-cccCCCeeeccccCHHHHHHHHHHHHHhhccccccc----C-----CCCcEEEEeCch
Confidence 45 455588988876422211 1111 1111 34999999999999998821000 0 278999999999
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------------ccccccHHHHHhhCCCeEEE---ec
Q 004970 215 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------------IAFTENVDKRFEGLGWHVIW---VK 274 (721)
Q Consensus 215 ~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------------~~~~~~~~~~~~a~G~~~~~---v~ 274 (721)
+++ .+.+.++.++.+++++.+++|+||+.|++.+... .....|+.+++++||+.+.. |
T Consensus 98 ~~~-~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v- 175 (237)
T cd02018 98 ATY-DIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSP- 175 (237)
T ss_pred HHH-hccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEcc-
Confidence 984 1346688888999999999999999887654211 01236899999999999986 6
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 275 NGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 275 dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
. +++++.++++++.+..++|++|++.+.
T Consensus 176 --~-~~~~l~~al~~al~~~~GP~lI~v~i~ 203 (237)
T cd02018 176 --A-LKKHFLKVVKEAISRTDGPTFIHAYTP 203 (237)
T ss_pred --C-CHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4 899999999999742578999999964
No 134
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.44 E-value=1.1e-12 Score=137.77 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=98.9
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCC-ccChhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG-~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
..|.+|.++|+|+|+++|.+ +.+|||++||| +|+ +...+|.+|.+++++.+++|+||+.|++.
T Consensus 57 ~~~~~G~alp~A~GaklA~P--------------d~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmt 120 (279)
T PRK11866 57 IHGIHGRVLPIATGVKWANP--------------KLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLT 120 (279)
T ss_pred cccccccHHHHHHHHHHHCC--------------CCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhh
Confidence 35889999999999999976 78899999999 688 77889999999999989999999988776
Q ss_pred cccc-cc----------------ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 249 GDTE-IA----------------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 249 ~~~~-~~----------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
+... .. ...|+.++++++|..++...... +++++.+++++|.+ .++|++|++.+.
T Consensus 121 ggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~-~~~~l~~~l~~Al~-~~Gps~I~v~~p 192 (279)
T PRK11866 121 TGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSG-DVKHLKEIIKEAIK-HKGFSFIDVLSP 192 (279)
T ss_pred cccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCC-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 5221 00 01289999999999876554556 89999999999998 889999999865
No 135
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.43 E-value=1.2e-12 Score=139.05 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=106.6
Q ss_pred CCC-eEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh
Q 004970 140 NRD-RFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 218 (721)
Q Consensus 140 ~~D-~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e 218 (721)
++| .+|.+.|..+.... ++. .....|.+|.++|+|+|+++|.+ +++|||++|||++.
T Consensus 44 p~d~vivsdiG~s~~~~~-yl~------~~~~~g~mG~alpaAiGaklA~p--------------d~~VV~i~GDG~~~- 101 (301)
T PRK05778 44 PDKVVVVSGIGCSSKIPG-YFL------SHGLHTLHGRAIAFATGAKLANP--------------DLEVIVVGGDGDLA- 101 (301)
T ss_pred CCCEEEEeCCcHhhhhhh-hcc------cCccchhhccHHHHHHHHHHHCC--------------CCcEEEEeCccHHH-
Confidence 344 46668886552211 111 11223889999999999999976 78999999999972
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEECCCccccccccc-----------------cccccHHHHHhhCCCeEE---EeccCCC
Q 004970 219 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-----------------AFTENVDKRFEGLGWHVI---WVKNGNT 278 (721)
Q Consensus 219 G~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-----------------~~~~~~~~~~~a~G~~~~---~v~dG~~ 278 (721)
++...+|.+|.+++++.+++|+||+.|++.+.... ....|+.++++++|+.++ .+ .
T Consensus 102 ~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v---~- 177 (301)
T PRK05778 102 SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFA---G- 177 (301)
T ss_pred hccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEecc---C-
Confidence 36678999999999999999999999987653210 023588999999999886 45 4
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 279 GYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 279 d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
++++|.+++++|.+ .++|++|++.+.
T Consensus 178 ~~~eL~~ai~~A~~-~~GpalIeV~~~ 203 (301)
T PRK05778 178 DVKQLVELIKKAIS-HKGFAFIDVLSP 203 (301)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEEcCC
Confidence 89999999999998 789999998764
No 136
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.42 E-value=8.4e-13 Score=153.54 Aligned_cols=118 Identities=21% Similarity=0.310 Sum_probs=96.8
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
..|+||+++|+|+|+++|.+ +++|||++|||+|+.+..-+++.+|.+++++.++||+||++|++..
T Consensus 428 ~~gsmG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 428 SAGGLGWALGAALGAKLATP--------------DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCCCcchHHHHHHhhcCC--------------CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccch
Confidence 36999999999999999865 7899999999999955434579999999999899999998888643
Q ss_pred cc-----------------cc-c-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc---CCCCEEEEEEEe
Q 004970 250 DT-----------------EI-A-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV---TDKPTLIRVTTT 305 (721)
Q Consensus 250 ~~-----------------~~-~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~---~~~P~lI~~~T~ 305 (721)
.. .. . ...|+.+++++||+.+.+| + +.++|.++++++.+. .++|++|++.+.
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 494 EAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERV---E-DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred hHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEe---C-CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 11 01 1 2468999999999999999 4 899999999998762 268999999863
No 137
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.42 E-value=9.4e-13 Score=138.30 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=95.7
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccc
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 250 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~ 250 (721)
.+++|+++|+|+|+++|.+ +++|||++|||+++- +...++.+|.+++++.+++|+||+.|++.+.
T Consensus 67 ~~~~G~alPaAiGaklA~P--------------dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~ 131 (277)
T PRK09628 67 HTTHGRAVAYATGIKLANP--------------DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNS 131 (277)
T ss_pred eeccccHHHHHHHHHHHCC--------------CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhccee
Confidence 4689999999999999987 789999999999862 4566788899999999999999999987542
Q ss_pred ccc-----------------cccccHHHHHhhCCCeEE---EeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 251 TEI-----------------AFTENVDKRFEGLGWHVI---WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 251 ~~~-----------------~~~~~~~~~~~a~G~~~~---~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
... ....|+.++++++|+.++ .| . ++++|.+++++|.+ .++|++|++.+.-
T Consensus 132 Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v---~-~~~el~~al~~Al~-~~Gp~lIeV~~~c 202 (277)
T PRK09628 132 QTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESV---I-DPQKLEKLLVKGFS-HKGFSFFDVFSNC 202 (277)
T ss_pred cccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc---C-CHHHHHHHHHHHHh-CCCCEEEEEcCCC
Confidence 110 012367999999999874 66 4 89999999999998 7899999998763
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.40 E-value=1.4e-12 Score=137.78 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=105.8
Q ss_pred CCeEEEcCCcchHHHHHHHHHhCCCCccc--CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCc-cC
Q 004970 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQV--TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QM 217 (721)
Q Consensus 141 ~D~~V~s~Gh~~~~~y~~l~l~G~~gie~--~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~-~~ 217 (721)
+..+|.+.|-.+.+.+ + +.+ ..|.+|+++|+|+|+++|.+ +++|||++|||+ |+
T Consensus 45 d~vvvsdiGc~~~~~~-------~--~~~~~~~g~mG~alpaAiGaklA~P--------------d~~VV~i~GDG~~f~ 101 (286)
T PRK11867 45 NVAVVSGIGCSGRLPG-------Y--INTYGFHTIHGRALAIATGLKLANP--------------DLTVIVVTGDGDALA 101 (286)
T ss_pred cEEEEeCCccccccCc-------c--ccccchhhhhhcHHHHHHHHHHhCC--------------CCcEEEEeCccHHHh
Confidence 3466678887663221 1 111 22799999999999999976 789999999995 87
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-c----------c------ccccHHHHHhhCCCeEEEeccCCCCH
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-I----------A------FTENVDKRFEGLGWHVIWVKNGNTGY 280 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-~----------~------~~~~~~~~~~a~G~~~~~v~dG~~d~ 280 (721)
+...+|.+|.+++++.+++|+||+.|++.+... . . ...++.++++++|..++....-. ++
T Consensus 102 --mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~-~~ 178 (286)
T PRK11867 102 --IGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDS-DV 178 (286)
T ss_pred --CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCC-CH
Confidence 777899999999999999999999997754221 0 0 12468899999998876421224 79
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 281 DDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 281 ~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
+++.++|++|.+ .++|++|++.+.
T Consensus 179 ~el~~al~~Al~-~~Gp~lIev~~~ 202 (286)
T PRK11867 179 KQLTELIKAAIN-HKGFSFVEILQP 202 (286)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 999999999998 789999999864
No 139
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.40 E-value=1.4e-12 Score=137.30 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=93.1
Q ss_pred cccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc
Q 004970 172 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 251 (721)
Q Consensus 172 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~ 251 (721)
+.+|+++|+|+|+++|.+ +++|||++|||++. ++...+|.+|.+++++.+++|+||+.|++.+..
T Consensus 53 t~mG~alPaAiGaklA~P--------------d~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ 117 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP--------------HLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQ 117 (287)
T ss_pred cccccHHHHHHHHHHHCC--------------CCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcc
Confidence 457999999999999976 78999999999973 577889999999999999999999988776532
Q ss_pred cc-c------------------ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 252 EI-A------------------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 252 ~~-~------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
.. . ...++.++++++|+...... . +++++.+++++|.+ .++|++|++.+.
T Consensus 118 ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~--~-~~~eL~~ai~~Al~-~~GpslIeV~~p 186 (287)
T TIGR02177 118 ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS--G-DVAHLKEIIKEAIN-HKGYALVDILQP 186 (287)
T ss_pred cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec--C-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 20 0 12235677778888777631 4 89999999999998 899999999865
No 140
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.33 E-value=4.7e-11 Score=139.39 Aligned_cols=231 Identities=18% Similarity=0.156 Sum_probs=162.0
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhh--cCCcEEEEEecCCcccCCCCCCCCChhhhHHH
Q 004970 463 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 540 (721)
Q Consensus 463 ~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~--~~~pV~~v~t~~g~~~g~dG~THq~~edia~l 540 (721)
.....|..++.+|.|.|..|. |.++.|=..=+.+|.|++...++ +..|++++.. ++- | -++|+....|.-+.
T Consensus 50 ~~~~~E~~a~~~~~GAs~aG~--ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~~~~-~~~--g-p~~~~~~q~d~~~~ 123 (595)
T TIGR03336 50 EWSVNEKVAVEVAAGAAWSGL--RAFCTMKHVGLNVAADPLMTLAYTGVKGGLVVVVA-DDP--S-MHSSQNEQDTRHYA 123 (595)
T ss_pred EECcCHHHHHHHHHHHHhcCc--ceEEEccCCchhhhHHHhhhhhhhcCcCceEEEEc-cCC--C-CccchhhHhHHHHH
Confidence 444589999999999999995 99999877778899999877654 3677777653 332 2 34777777777666
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CCC---CC-----Ccc--ccc-------
Q 004970 541 RAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PHL---AG-----TSI--DGV------- 592 (721)
Q Consensus 541 r~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~~--~~~---~~-----~~~--~~~------- 592 (721)
+. -++.|+.|+|.+|+..+...|++ +..-|+++++.. +.+ +.. .. .+. ...
T Consensus 124 ~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (595)
T TIGR03336 124 KF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARV 202 (595)
T ss_pred Hh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHH
Confidence 65 47889999999999999888874 256799998632 111 000 00 000 000
Q ss_pred ----------------cCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhh
Q 004970 593 ----------------EKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 656 (721)
Q Consensus 593 ----------------~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~ 656 (721)
....|..... .+.|++||++|+++..++++.+.| |++++|+++++++|||++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~--- 273 (595)
T TIGR03336 203 RHKKLLSKQHKLREELNESPLNRLEI---NGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVE--- 273 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecc---CCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHH---
Confidence 0000111111 257999999999999999977665 999999999999999998763
Q ss_pred hhcccCCceEEEEcccccccchhhh----c---CCceEEEe-ccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004970 657 SVLPAAVSARVSIEAGSTFGWEKIV----G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 657 ~v~~~~~~~~v~vE~~~~~G~~~~v----~---~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ 719 (721)
.+++.... +||+|++.. +++..+ . .+..++|+ |.|++ +..+||+++|.+++++
T Consensus 274 ~~~~~~~~-vivvEe~~~-~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~ 334 (595)
T TIGR03336 274 EFLSGVEE-VLVVEELEP-VVEEQVKALAGTAGLNIKVHGKEDGFLP--------REGELNPDIVVNALAK 334 (595)
T ss_pred HHHhcCCe-EEEEeCCcc-HHHHHHHHHHHhcCCCeEEecccCCccC--------cccCcCHHHHHHHHHH
Confidence 34443334 599999983 343321 1 14567898 67887 5679999999999876
No 141
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.33 E-value=6.1e-12 Score=146.81 Aligned_cols=140 Identities=14% Similarity=0.076 Sum_probs=109.4
Q ss_pred CCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh
Q 004970 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 220 (721)
Q Consensus 141 ~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~ 220 (721)
+..++.|.|....+.. ..+ ..-.+.|+||+++|.|+|+++|.+ +++|+|++|||+|+ +
T Consensus 378 d~ivv~D~G~~~~~~~-----~p~-~~~~~~~~mG~~~~~AiGa~~a~p--------------~~~Vv~i~GDG~f~--~ 435 (595)
T TIGR03336 378 EAIFPSDIGCYTLGIQ-----PPL-GTVDTTLCMGASIGVASGLSKAGE--------------KQRIVAFIGDSTFF--H 435 (595)
T ss_pred CcEEecCcchhhcccc-----CCc-cccceeeccCchHHHHhhhhhcCC--------------CCCEEEEeccchhh--h
Confidence 3445568887664321 011 112235999999999999999875 78899999999998 7
Q ss_pred H-HHHHHHHHhcCCCeEEEEEECCCccccccccc-----------cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHH
Q 004970 221 A-NEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 288 (721)
Q Consensus 221 ~-~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~ 288 (721)
. ..+|.+|.+++++.+++|+||+.|++.+.... ....|+.++++++|+++.++.+-. +++++.++++
T Consensus 436 ~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~-~l~~l~~al~ 514 (595)
T TIGR03336 436 TGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPL-NVKETIEVFK 514 (595)
T ss_pred cCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcC-CHHHHHHHHH
Confidence 6 78999999999999999999999987653221 123589999999999999995555 6788899999
Q ss_pred HHHhcCCCCEEEEEEE
Q 004970 289 EAKAVTDKPTLIRVTT 304 (721)
Q Consensus 289 ~a~~~~~~P~lI~~~T 304 (721)
++.+ .++|++|+++.
T Consensus 515 ~a~~-~~gp~li~v~~ 529 (595)
T TIGR03336 515 AALA-AEGVSVIIAKQ 529 (595)
T ss_pred HHHh-cCCCEEEEEcc
Confidence 9997 78999999874
No 142
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.29 E-value=1.6e-10 Score=126.05 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=146.2
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
+...|++ .-.|..++++|.|.|..|. |.++.|=...+.+|++.|...+...+|++++.. .+-+.+ -|.|+....|
T Consensus 47 ~~~~~vq-~E~E~aA~~~a~GAs~aG~--Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v-~R~~p~-~g~t~~eq~D 121 (352)
T PRK07119 47 VGGVFVQ-AESEVAAINMVYGAAATGK--RVMTSSSSPGISLKQEGISYLAGAELPCVIVNI-MRGGPG-LGNIQPSQGD 121 (352)
T ss_pred hCCEEEe-eCcHHHHHHHHHHHHhhCC--CEEeecCcchHHHHHHHHHHHHHccCCEEEEEe-ccCCCC-CCCCcchhHH
Confidence 3345666 6899999999999999995 999999899999999999999999999766653 233333 3447766667
Q ss_pred hHHHhc-----CCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CCC---CCCccccccCc--
Q 004970 537 LASFRA-----MPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PHL---AGTSIDGVEKG-- 595 (721)
Q Consensus 537 ia~lr~-----iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~~--~~~---~~~~~~~~~~G-- 595 (721)
+-+.+. --++.|+.|+|++|+..+...|++ +..-|++++... +++ |.. ..........|
T Consensus 122 ~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T PRK07119 122 YFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTK 201 (352)
T ss_pred HHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCC
Confidence 655432 224899999999999998888774 246799998631 221 110 00000000000
Q ss_pred ------------------------------------cEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEE
Q 004970 596 ------------------------------------AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVV 639 (721)
Q Consensus 596 ------------------------------------~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI 639 (721)
.+..... ++.|++||++|+++..|++|++.|+++|++++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~---~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi 278 (352)
T PRK07119 202 GRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNT---EDAELVLVAYGTSARIAKSAVDMAREEGIKVGLF 278 (352)
T ss_pred CCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecC---CCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEE
Confidence 0011111 2579999999999999999999999999999999
Q ss_pred ecCchhhhHHHHHHHhhhhcccCCceEEEEccc
Q 004970 640 SFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 672 (721)
Q Consensus 640 ~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~ 672 (721)
++++++|||.+.+. ..++.. +.++|+|..
T Consensus 279 ~~~~l~Pfp~~~i~---~~l~~~-k~VivvE~n 307 (352)
T PRK07119 279 RPITLWPFPEKALE---ELADKG-KGFLSVEMS 307 (352)
T ss_pred eeceecCCCHHHHH---HHHhCC-CEEEEEeCC
Confidence 99999999998763 334433 345999998
No 143
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.23 E-value=4.4e-10 Score=121.72 Aligned_cols=147 Identities=24% Similarity=0.267 Sum_probs=116.3
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCC--Cccc-CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYD--SVQV-TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 216 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~--gie~-~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~ 216 (721)
++|.|+++-|-..|..-..+...-.| .++. +.|+||-|++.|+++|++.+ +++|||+-||++|
T Consensus 395 ~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P--------------~~~V~~veGDsaF 460 (571)
T KOG1185|consen 395 NDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAP--------------DRKVVCVEGDSAF 460 (571)
T ss_pred CCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCC--------------CCeEEEEecCccc
Confidence 48999999998888775554433322 3443 68999999999999999886 8899999999999
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEEEECCCc-cccccc--c--------------ccccccHHHHHhhCCCeEEEeccCCCC
Q 004970 217 MEGIANEASSLAGHLGLGKLIAFYDDNHI-SIDGDT--E--------------IAFTENVDKRFEGLGWHVIWVKNGNTG 279 (721)
Q Consensus 217 ~eG~~~Eal~~a~~~~L~~li~IvddN~~-~i~~~~--~--------------~~~~~~~~~~~~a~G~~~~~v~dG~~d 279 (721)
. .+.-++.++.+++|+.+++|+|||++ +.+... + .....++.+..++||-+...| . +
T Consensus 461 G--fSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v---~-t 534 (571)
T KOG1185|consen 461 G--FSAMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFV---S-T 534 (571)
T ss_pred C--cchhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceee---C-C
Confidence 5 88889999999999999999988876 222211 1 112356788999999988888 4 8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 280 YDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 280 ~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+++|..+++++.+.+++|++|.+..-+
T Consensus 535 ~~el~~~l~~a~q~~~~psvINVlI~p 561 (571)
T KOG1185|consen 535 VEELLAALQQACQDTDKPSVINVLIGP 561 (571)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEecc
Confidence 999999999998856799999887644
No 144
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.17 E-value=2.3e-10 Score=109.91 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=99.3
Q ss_pred CCCCccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCCh
Q 004970 456 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 534 (721)
Q Consensus 456 ~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ 534 (721)
+.+++.+..++.|++++++|.|+++.|+ +|++. ++.+|+.+++++|+.++..++||+++.++.+.. +.++.+||..
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~--~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~~-~~~~~~~q~~ 108 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGG--PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGIS-AQAKQTFQSM 108 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhC--CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCChh-hhccCccccc
Confidence 3678999999999999999999999995 88876 469999999999998888999999998666553 4457789999
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHH---HHHcCCCcEEEEEcC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKV---AVANRKRPSILALSR 578 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~---a~~~~~~P~~Irl~r 578 (721)
+++++++.+|++.+..|++.++...+.+. +.. ..+|++|++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYA-SQGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEccC
Confidence 99999999999999999887766554433 333 47899999864
No 145
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.15 E-value=2e-09 Score=118.43 Aligned_cols=202 Identities=21% Similarity=0.208 Sum_probs=144.8
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
..|+..- +|..++++|.|.|..|. |.++.|=+.=+.+|.+++-..+..++|++++.. ++.+.+..-+|+....|+-
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~--Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~-~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGA--KAMTATSGPGFSLMQENIGYAAMTETPCVIVNV-QRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCC--CeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEe-ecCCCCCCCCCCcCcHHHH
Confidence 4566666 99999999999999995 999998888888999999988888999777653 3443333346776666766
Q ss_pred HHh-----cCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC--CC---CC-------C---C--
Q 004970 539 SFR-----AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL--PH---LA-------G---T-- 587 (721)
Q Consensus 539 ~lr-----~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~------r~~~--~~---~~-------~---~-- 587 (721)
..+ .. +..|+.|+|.+|+..+...|++ +..-|++++.. +..+ +. +. . .
T Consensus 125 ~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 125 QARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 555 22 3589999999999998888774 24579999763 1111 00 00 0 0
Q ss_pred -ccc----ccc----Cc--c------------------------------------------EEEecCCCCCCCCEEEEE
Q 004970 588 -SID----GVE----KG--A------------------------------------------YIISDNSSGNKPDVILIG 614 (721)
Q Consensus 588 -~~~----~~~----~G--~------------------------------------------~~v~~~~~~~g~dvtIva 614 (721)
... .++ .| . +...+. .+.|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~---~~ad~~iv~ 280 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYML---EDAEVVVVA 280 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecC---CCCCEEEEE
Confidence 000 000 01 1 111111 257899999
Q ss_pred eChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccc
Q 004970 615 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 672 (721)
Q Consensus 615 ~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~ 672 (721)
+|++...+++|++.|+++|+++.++++++++||+.+.+. ..++.. +.++++|++
T Consensus 281 ~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~---~~~~~~-k~VivvEe~ 334 (376)
T PRK08659 281 YGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIR---ELAKKV-KAIVVPEMN 334 (376)
T ss_pred eCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEeCC
Confidence 999999999999999999999999999999999998653 344443 445999999
No 146
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.15 E-value=3.9e-10 Score=121.27 Aligned_cols=163 Identities=21% Similarity=0.231 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC---CcccCccccchhHHHHHHHHHHH
Q 004970 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD---SVQVTTGPLGQGMANAVGLALAE 188 (721)
Q Consensus 112 g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~---gie~~~G~lG~gl~~AvG~AlA~ 188 (721)
..-++..+++-++... .. +++.+|...|----.+.-++ ..+.+ -+|.....||+-++.++|+.+|.
T Consensus 392 nt~ptq~~vigav~~~---~~-------~~svvvcAAGsLPGdLhkLW-~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~ 460 (617)
T COG3962 392 NTLPTQTQVIGAVQRT---IS-------DDSVVVCAAGSLPGDLHKLW-RAGVPGTYHLEYGFSCMGYEIAGGLGAKAAE 460 (617)
T ss_pred ccCccchhHHHHHHhh---cC-------CCcEEEEeCCCCcHHHHHHh-ccCCCCceeeeecccccccccccccccccCC
Confidence 4556677777777766 33 56888889885433343333 23333 45667799999999999999766
Q ss_pred HHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc---------------
Q 004970 189 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--------------- 253 (721)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~--------------- 253 (721)
+ |+.||+++|||+++ |...+|.++..++++..++++||.+|+...+.+.
T Consensus 461 p--------------dreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~ 524 (617)
T COG3962 461 P--------------DREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTD 524 (617)
T ss_pred C--------------CCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhc
Confidence 5 78899999999999 9999999999999988888888889976655431
Q ss_pred ----cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 254 ----AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 254 ----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
...-|+++.+++||.+..+| + ++++|.+||+.|++ ..++++|+++|..
T Consensus 525 ~e~~~~~vDfA~~A~s~Ga~~~kv---~-~i~eL~aAL~~Ak~-~~~ttvi~I~t~P 576 (617)
T COG3962 525 HEEEILQVDFAAHAESYGAKAYKV---G-TIEELEAALADAKA-SDRTTVIVIDTDP 576 (617)
T ss_pred ccCCCCcccHHHHHhhcCceeEec---C-CHHHHHHHHHHHHh-CCCCEEEEEecCC
Confidence 12347899999999999999 5 99999999999998 8999999999975
No 147
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.14 E-value=1.4e-10 Score=148.69 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=98.0
Q ss_pred Cccccch--hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhc--CCCeEEEEEECCCc
Q 004970 170 TTGPLGQ--GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL--GLGKLIAFYDDNHI 245 (721)
Q Consensus 170 ~~G~lG~--gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~--~L~~li~IvddN~~ 245 (721)
..|.||+ ++|.|+|+++|. +++|+|++|||+|+ |..++|.+|.++ +++.+++|+||+++
T Consensus 757 ~~G~mG~~G~lpaAIGaala~---------------~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC---------------NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC---------------CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 5699999 599999999874 45799999999999 999999999985 99989999999998
Q ss_pred cccccc------c---------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 246 SIDGDT------E---------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 246 ~i~~~~------~---------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
++.... + .....|+.+++++||+++.+| . ++++|.++++++.+ .++|++|+|.|.+
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV---~-~~~eL~~aL~~a~~-~~~p~lIEV~t~~ 890 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHV---G-TKSELEDALFTSQV-EQMDCVVEVESSI 890 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeec---C-CHHHHHHHHHHhhc-cCCCEEEEEecCh
Confidence 765421 1 012468999999999999999 4 89999999999987 7899999999953
No 148
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.10 E-value=6.4e-10 Score=118.15 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHhhC--------CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCC--cchHHHHH
Q 004970 88 VEKSVNTIRFLAVDAVEKAN--------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG--HGCMLQYA 157 (721)
Q Consensus 88 l~~~a~~iR~~~~~~~~~a~--------~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~G--h~~~~~y~ 157 (721)
++..+.+.|.+-...+..++ .--+|...-..+.+-.|-.. -|- -.|++|+++| .+.||--.
T Consensus 437 ~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~Ldk~---t~d------~~~kviitTGVGqHQMWAAq 507 (675)
T KOG4166|consen 437 LKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKVLDKL---TDD------TGRKVIITTGVGQHQMWAAQ 507 (675)
T ss_pred hhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHHHHHh---ccC------cCceEEEeccccHHHHHHHH
Confidence 33344455555444444333 34577788888887777655 220 3456666554 44454322
Q ss_pred HHHHhCCC-C-c-ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCC
Q 004970 158 LLHLAGYD-S-V-QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 234 (721)
Q Consensus 158 ~l~l~G~~-g-i-e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~ 234 (721)
+..... | - + .-..|.||+|+|+|+|+..|.+ +..|+=+-||++|. |+..+|.++.+.+++
T Consensus 508 fy~w~k-P~~~~tSGGLGtMGfGLPAAIGAsVA~P--------------~~iViDIDGDaSF~--Mt~~ELat~rq~~~P 570 (675)
T KOG4166|consen 508 FYNWKK-PRQWLTSGGLGTMGFGLPAAIGASVANP--------------DAIVIDIDGDASFI--MTVQELATIRQENLP 570 (675)
T ss_pred HhcccC-ccceeecCCccccccCcchhhcccccCc--------------ccEEEeccCCceee--eehHhhhhhhhcCCc
Confidence 211110 1 0 1 1135899999999999999887 78999999999999 999999999999999
Q ss_pred eEEEEEECCCccccccccc-----------cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 235 KLIAFYDDNHISIDGDTEI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
..|+|+||.+.++-.+.+. ...+++.++++++|++..+| . .-++|.+.+++... +++|+++++.
T Consensus 571 VKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~-K~edL~~k~kefls-TkGPvLleV~ 645 (675)
T KOG4166|consen 571 VKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---T-KKEDLREKIKEFLS-TKGPVLLEVI 645 (675)
T ss_pred eEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchhee---e-hHHHHHHHHHHHhC-CCCCeEEEEE
Confidence 9999999998887765541 23478999999999999999 3 78999999999997 8999999999
Q ss_pred EeeccC
Q 004970 304 TTIGFG 309 (721)
Q Consensus 304 T~kg~G 309 (721)
+.+-.-
T Consensus 646 v~~keh 651 (675)
T KOG4166|consen 646 VPHKEH 651 (675)
T ss_pred ccCccc
Confidence 876433
No 149
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.10 E-value=1.9e-10 Score=125.53 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=139.9
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHHHHh--hC--CCCCCCCCC-HHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcc
Q 004970 77 ETLETSTDAALVEKSVNTIRFLAVDAVEK--AN--SGHPGLPMG-CAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHG 151 (721)
Q Consensus 77 ~~~~~~~~~~~l~~~a~~iR~~~~~~~~~--a~--~GH~g~~ls-~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~ 151 (721)
++.+.......|++++.+|-......-.. .. .+-+-...+ ...-...++...=++ ..+.|.++..+|..
T Consensus 320 ~~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------l~~~d~v~~ETG~S 393 (561)
T KOG1184|consen 320 ATFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKF------LSSGDVVIAETGDS 393 (561)
T ss_pred ccccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhh------cCCCceEEEecccc
Confidence 56666778889999999988776554311 00 111111111 122233455442122 12678888899987
Q ss_pred hHHHHHHHHHhCCC-CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHh
Q 004970 152 CMLQYALLHLAGYD-SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 230 (721)
Q Consensus 152 ~~~~y~~l~l~G~~-gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~ 230 (721)
......+....|-. ..++-+|+.|+++++++|+++|.+ +++|+.++|||+|| ++.+++.++.+
T Consensus 394 ~F~~~~~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~--------------e~rvilfiGDGs~q--lTvQeiStmir 457 (561)
T KOG1184|consen 394 WFGINQTKFPKGCGYESQMQWGSIGWSVGATLGYAQAAP--------------EKRVILFIGDGSFQ--LTVQEISTMIR 457 (561)
T ss_pred eecceeeccccccceEEEEEEeeccccchhhhhhhhccC--------------CceEEEEecCccce--eeHHHHHHHHh
Confidence 73332222222211 446789999999999999999987 78999999999999 99999999999
Q ss_pred cCCCeEEEEEECCCcccccccc-----ccccccHHHHHhhCCC-----eEEEeccCCCCHHHHHHHHHHHH-hcCCCCEE
Q 004970 231 LGLGKLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGW-----HVIWVKNGNTGYDDIRAAIKEAK-AVTDKPTL 299 (721)
Q Consensus 231 ~~L~~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~-----~~~~v~dG~~d~~~l~~al~~a~-~~~~~P~l 299 (721)
|+|++++|++||++|.|..... ....-|+.+++++||- +...+ . .-.++.++++.+. +..++|++
T Consensus 458 ~gl~~~if~~NN~GYTIE~~IH~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v---~-~~~e~~~~~~~~~~~~~~~i~l 533 (561)
T KOG1184|consen 458 WGLKPIIFLINNGGYTIEVEIHDGPYNDIQNWDYTALLEAFGAGEGKYETHKV---R-TEEELVEAIKDATFEKNDKIRL 533 (561)
T ss_pred cCCCcEEEEEeCCceEEEEeecCCCccccccchHHHHHHhhcCccceeEEeee---c-cchHHHHHHhhhhhcccCceEE
Confidence 9999999999999999887553 2233578888898874 23344 2 4467778877775 34678999
Q ss_pred EEEEEe
Q 004970 300 IRVTTT 305 (721)
Q Consensus 300 I~~~T~ 305 (721)
|||+..
T Consensus 534 iEv~l~ 539 (561)
T KOG1184|consen 534 IEVILP 539 (561)
T ss_pred EEEecC
Confidence 999854
No 150
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.08 E-value=9.4e-10 Score=116.27 Aligned_cols=127 Identities=17% Similarity=0.062 Sum_probs=100.7
Q ss_pred CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc
Q 004970 166 SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 245 (721)
Q Consensus 166 gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~ 245 (721)
.+......+|.+++.|.|+++|.+.++. .+..|++++|||++.++-. |+|+.|..+++ |+++|+.||++
T Consensus 63 ~~~~i~~~~G~~~~~A~G~a~A~~~~~~---------~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~-~v~~vv~dN~~ 131 (300)
T PRK11864 63 TVPVLHTAFAATAAVASGIEEALKARGE---------KGVIVVGWAGDGGTADIGF-QALSGAAERNH-DILYIMYDNEA 131 (300)
T ss_pred cccceeehhhChHHHHHHHHHHHHhhCC---------CCcEEEEEEccCccccccH-HHHHHHHHhCc-CEEEEEECCee
Confidence 4455688999999999999999886531 1345777999999987774 99999999998 67888888876
Q ss_pred ccccccc------------------ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 246 SIDGDTE------------------IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 246 ~i~~~~~------------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
.+.+..+ ....-|+.+++.++|..++...+-. |+.++.+++++|.+ .++|++|++.+.
T Consensus 132 ~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~-~~~~~~~~i~~A~~-~~Gps~I~~~sp 207 (300)
T PRK11864 132 YMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIA-YPEDFIRKLKKAKE-IRGFKFIHLLAP 207 (300)
T ss_pred eecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 4443222 1123578999999999888665777 89999999999998 889999999875
No 151
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.03 E-value=1.2e-08 Score=112.09 Aligned_cols=196 Identities=16% Similarity=0.094 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHh-----
Q 004970 467 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR----- 541 (721)
Q Consensus 467 aE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr----- 541 (721)
.|..++++|.|.|..|. |.++.|=..=+.+|.+++-.++..++|++++. ..+.|.+..-||.....|+...+
T Consensus 55 ~E~aA~~~a~GAs~aG~--Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~-~~R~GpstG~p~~~~q~D~~~~~~~~hg 131 (375)
T PRK09627 55 DEISGISVALGASMSGV--KSMTASSGPGISLKAEQIGLGFIAEIPLVIVN-VMRGGPSTGLPTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHhhCC--CEEeecCCchHHHHhhHHHHHHhccCCEEEEE-eccCCCcCCCCCccchHHHHHHhcCCCC
Confidence 89999999999999995 99999888888899999999999999977754 34433333347777777877766
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC--CC---CC----------CC--ccccccC-
Q 004970 542 AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL--PH---LA----------GT--SIDGVEK- 594 (721)
Q Consensus 542 ~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~------r~~~--~~---~~----------~~--~~~~~~~- 594 (721)
..|.+ |++|+|.+|+..+...|++ +..-|++++.. ++++ |. +. .+ ....+..
T Consensus 132 d~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T PRK09627 132 DFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVA 210 (375)
T ss_pred CcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccC
Confidence 55666 9999999999998888774 24679998753 1111 10 00 00 0000000
Q ss_pred ------------------------------------------------------ccEEEecCCCCCCCCEEEEEeChhHH
Q 004970 595 ------------------------------------------------------GAYIISDNSSGNKPDVILIGTGSELE 620 (721)
Q Consensus 595 ------------------------------------------------------G~~~v~~~~~~~g~dvtIva~G~~v~ 620 (721)
..+..... +..|+.||++|+...
T Consensus 211 ~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~---~dAd~~IV~~GSt~~ 287 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYML---DDAEILIIAYGSVSL 287 (375)
T ss_pred CCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCC---CCCCEEEEEeCCCHH
Confidence 00111111 146899999999999
Q ss_pred HHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccc
Q 004970 621 IAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS 673 (721)
Q Consensus 621 ~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~ 673 (721)
.+.+|.+.|+++|+++.++.++.+.||+.+.+. ..++.. +.++++|.+.
T Consensus 288 ~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~viVvE~n~ 336 (375)
T PRK09627 288 SAKEAIKRLREEGIKVGLFRPITLWPSPAKKLK---EIGDKF-EKILVIELNM 336 (375)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHH---HHHhcC-CEEEEEcCCh
Confidence 999999999999999999999999999987552 445443 4459999986
No 152
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.02 E-value=1.1e-07 Score=103.91 Aligned_cols=477 Identities=17% Similarity=0.198 Sum_probs=260.6
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcC-CCCC-CcCCcEEEE--EECCCccC-hhhHHHHHHHHH--hcCCCeEEEEEECC
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYN-KPDN-EIVDHYTYV--ILGDGCQM-EGIANEASSLAG--HLGLGKLIAFYDDN 243 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~-~~~~-~~~~~~vv~--viGDG~~~-eG~~~Eal~~a~--~~~L~~li~IvddN 243 (721)
-.+|-.--|.|+|-+-++.......+ .|+. ......|+| +-||++|. +|.+||.++++- ++.++--+.++-||
T Consensus 282 PSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNN 361 (913)
T KOG0451|consen 282 PSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNN 361 (913)
T ss_pred hhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecc
Confidence 44555556888888777654321111 1211 112234544 56999996 899999988765 66676677777788
Q ss_pred Cccccccccccccc-cHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcc
Q 004970 244 HISIDGDTEIAFTE-NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSV 319 (721)
Q Consensus 244 ~~~i~~~~~~~~~~-~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~ 319 (721)
+++...+.+..... --.++.+++++.++.| ||+ |++++.+|-+-|.+ .-+|-++|.+.+.+.+||...+++ .+
T Consensus 362 QvgfTtp~~rGRSs~ycsDiaK~~~~pviHV-NGD-~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~f 438 (913)
T KOG0451|consen 362 QVGFTTPGDRGRSSAYCSDIAKSIQAPVIHV-NGD-DPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TF 438 (913)
T ss_pred cccccCcccccccchhhhHHHHHhCCCEEEe-CCC-CHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cc
Confidence 88777665532221 1235667788999998 999 99999998877754 246789999999999999766432 22
Q ss_pred cCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHH----------HH-H
Q 004970 320 HGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAE----------FK-S 387 (721)
Q Consensus 320 H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~----------~~-~ 387 (721)
- +|.--++++ +++ .+.+.|.+ .+++|-..+++..+...+|.+...+..+. ++ +
T Consensus 439 t-spvmyk~v~-aRe-------------SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~ 503 (913)
T KOG0451|consen 439 T-SPVMYKEVE-ARE-------------SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQ 503 (913)
T ss_pred c-ChhHHHHHH-hhh-------------cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCchhhHHh
Confidence 1 222112222 121 12234544 33455444444444444433221111100 00 0
Q ss_pred Hhc-CCCC---CcccccC---------------CC-CC-----------------CCCcchhHHHHHHHHHHHHHHhCCC
Q 004970 388 ISS-GQLP---AGWEKAL---------------PT-YT-----------------PESPAEATRNLSQTCLNALAKTLPG 430 (721)
Q Consensus 388 ~~~-~~~p---~~~~~~~---------------p~-~~-----------------~~~~~~~~r~a~~~~L~~l~~~~p~ 430 (721)
|.. ...| ..|..-+ |+ +. ....+.+...|=.-++-.++.+.-+
T Consensus 504 W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~n 583 (913)
T KOG0451|consen 504 WTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHN 583 (913)
T ss_pred hhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCc
Confidence 000 0001 0121111 10 00 0011233333444467788888899
Q ss_pred eEEEeccCCCcccchh------cc-------cccCccc-CCCCccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhH
Q 004970 431 LLGGSADLASSNMTLL------KM-------FGDFQKD-TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVF 495 (721)
Q Consensus 431 vv~~saDl~~s~~~~~------~~-------~~~f~~~-~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F 495 (721)
+.+-+.|++..+.... .. +.....+ +--=-+-|..++|.+..|+--||+.+.....+++. .|.+|
T Consensus 584 VRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDF 663 (913)
T KOG0451|consen 584 VRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDF 663 (913)
T ss_pred eeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhccc
Confidence 9999999986542210 00 0001000 00012457889999999999999998865677774 68888
Q ss_pred HHhH---HHHHHHhh---h-cCCcEEEEEecCCcccCCCCCCCCChhhhHHHh-----------cCCCcEEEeeCCHHHH
Q 004970 496 TDYM---RAAIRISA---L-CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-----------AMPNILMLRPADGNET 557 (721)
Q Consensus 496 ~~r~---~dqir~~a---~-~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr-----------~iPnl~V~~P~d~~e~ 557 (721)
..-+ +|-.-..+ + ....+++.. +.|+. .-||-|.+---.-++. .--||.|+-|.++.+.
T Consensus 664 fNGAQIIiDTFi~sgE~KWl~ssglvmLL-PHGyD--GAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQY 740 (913)
T KOG0451|consen 664 FNGAQIIIDTFIVSGETKWLESSGLVMLL-PHGYD--GAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQY 740 (913)
T ss_pred ccCceEEEeeeecccchhhhhhCCeEEEc-cCCcC--CCCCccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHH
Confidence 6432 23211111 2 233344443 45552 2577886544444442 2357999999999999
Q ss_pred HHHHHH-HHHcCCCcEEEEEcCCCC--CCCCCCcccccc--------CccEEEecCCCCCCCCEEEEEeChhHHHHHHHH
Q 004970 558 AGAYKV-AVANRKRPSILALSRQKL--PHLAGTSIDGVE--------KGAYIISDNSSGNKPDVILIGTGSELEIAAKAA 626 (721)
Q Consensus 558 ~~~l~~-a~~~~~~P~~Irl~r~~~--~~~~~~~~~~~~--------~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa 626 (721)
..+|+. .+++...|.++.-||--+ |....+ .+.+. +|.-. .+.. .-+-+|+..|--.....+..
T Consensus 741 fHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST-~~ef~PGTtf~nVigd~~-~~p~---kvkkvifcSGKH~y~l~k~R 815 (913)
T KOG0451|consen 741 FHLLRRQLVRNFRKPLIVVAPKTLLRLPAATST-HEEFQPGTTFHNVIGDTI-AKPE---KVKKVIFCSGKHYYTLAKER 815 (913)
T ss_pred HHHHHHHHHHhccCceEEechHHHhhCcchhhh-HhhcCCCccccccccccc-cChh---HheEEEEecCcchhhHHHHH
Confidence 999985 456667898887665322 111000 11122 23222 1211 23456777788776665665
Q ss_pred HHHHhCCCceEEEecCchhhhHHHHHHHhhhhccc-C-CceEEEEccccccc
Q 004970 627 EELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA-A-VSARVSIEAGSTFG 676 (721)
Q Consensus 627 ~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~-~-~~~~v~vE~~~~~G 676 (721)
+.+..+ -++.+|-+-++-||..+.+. ..+.+- + ...+..-|+....|
T Consensus 816 e~rgak-d~~AI~RvE~LCPFPi~~LQ--a~l~kY~~vqdfvWSQEEprNmG 864 (913)
T KOG0451|consen 816 EKRGAK-DTVAILRVESLCPFPIQELQ--AQLAKYGNVQDFVWSQEEPRNMG 864 (913)
T ss_pred Hhcccc-cceeeEehhhcCCCchHHHH--HHHHhcCChhhhcccccccccCC
Confidence 554322 23677777777777765442 122221 1 12346668877666
No 153
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.02 E-value=1.4e-08 Score=112.95 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCc
Q 004970 467 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 546 (721)
Q Consensus 467 aE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl 546 (721)
+|..+++++.|.|..|. |.+..|=++=+.+|.|.|...+...+|++++...-++ .+ .-++|....|+-..| -.++
T Consensus 64 ~E~~A~~~~~GAs~aGa--Ra~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~-~~-~~~i~~d~~D~~~~r-~~g~ 138 (407)
T PRK09622 64 SEHAAMSACVGAAAAGG--RVATATSSQGLALMVEVLYQASGMRLPIVLNLVNRAL-AA-PLNVNGDHSDMYLSR-DSGW 138 (407)
T ss_pred cHHHHHHHHHHHHhhCc--CEEeecCcchHHHHhhHHHHHHHhhCCEEEEEecccc-CC-CcCCCchHHHHHHHh-cCCe
Confidence 89999999999999995 9888888888889999999999999997766533322 22 356777777776666 4679
Q ss_pred EEEeeCCHHHHHHHHHHHHHc---C--CCcEEEEEcC-------CCCCCCCC-------C---cc-------cccc----
Q 004970 547 LMLRPADGNETAGAYKVAVAN---R--KRPSILALSR-------QKLPHLAG-------T---SI-------DGVE---- 593 (721)
Q Consensus 547 ~V~~P~d~~e~~~~l~~a~~~---~--~~P~~Irl~r-------~~~~~~~~-------~---~~-------~~~~---- 593 (721)
.+++|+|.+|+..+...|++- . .-|+++++.- +++..+.. + +. .+..
T Consensus 139 ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (407)
T PRK09622 139 ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQ 218 (407)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCC
Confidence 999999999999998888753 2 5799987531 11100000 0 00 0000
Q ss_pred ----------------------------------Cc-cEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEE
Q 004970 594 ----------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 638 (721)
Q Consensus 594 ----------------------------------~G-~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 638 (721)
.| .|...+.-+..+.|++||++|+++..+.+|++.|+++|+++.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgv 298 (407)
T PRK09622 219 TEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGV 298 (407)
T ss_pred CCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEE
Confidence 00 0100110001257899999999999999999999999999999
Q ss_pred EecCchhhhHHHHHHHhhhhcccCCceEEEEccccccc-chh
Q 004970 639 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEK 679 (721)
Q Consensus 639 I~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G-~~~ 679 (721)
|++++++|||.+.+. .+++.. +.++++|++...| ++.
T Consensus 299 i~~r~~~Pfp~~~l~---~~l~~~-k~VvVvE~~~~~Gg~G~ 336 (407)
T PRK09622 299 ATIRVLRPFPYERLG---QALKNL-KALAILDRSSPAGAMGA 336 (407)
T ss_pred EEeeEhhhCCHHHHH---HHHhcC-CEEEEEeCCCCCCCccH
Confidence 999999999998653 344443 4469999997644 443
No 154
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.89 E-value=4.3e-08 Score=94.28 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCC-eEEEeccCCCcccch--hcccc-cCccc---------CCCCccccCCchHHHHHHHHHHHHhc
Q 004970 415 NLSQTCLNALAKTLPG-LLGGSADLASSNMTL--LKMFG-DFQKD---------TPEERNVRFGVREHGMGAICNGIALH 481 (721)
Q Consensus 415 ~a~~~~L~~l~~~~p~-vv~~saDl~~s~~~~--~~~~~-~f~~~---------~~p~R~~~~GIaE~~~vg~aaGlA~~ 481 (721)
.++++.|.++++.+|. +.++++|...|+... ++.+. .|..+ ..+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 4678889999999875 999999998887652 21111 11000 11344444559999999999999999
Q ss_pred CCCCccEEEEchhHHH---hHHHH----HHHhh---h-cCCc-EEEEEecCCcccCCCCCCCCChhhh-HHHhcCCC-cE
Q 004970 482 SPGLIPYCATFFVFTD---YMRAA----IRISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQPIEHL-ASFRAMPN-IL 547 (721)
Q Consensus 482 G~~~~Piv~~~~~F~~---r~~dq----ir~~a---~-~~~p-V~~v~t~~g~~~g~dG~THq~~edi-a~lr~iPn-l~ 547 (721)
|+ .-++.+|..|+. -|+.| ++... . ...| +.++.|...+--+.+|.|||...-+ .++.-.|+ ++
T Consensus 82 Gr--hglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GR--HGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CC--cccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 97 999999999974 56776 22221 1 2233 5566666777679999999954433 33444455 59
Q ss_pred EEeeCCHHHHHHHHHHHHH
Q 004970 548 MLRPADGNETAGAYKVAVA 566 (721)
Q Consensus 548 V~~P~d~~e~~~~l~~a~~ 566 (721)
||.|+|++.+.++++.|++
T Consensus 160 vylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH
T ss_pred eecCCcHhHHHHHHHHHhc
Confidence 9999999999999999985
No 155
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.75 E-value=8.8e-08 Score=101.49 Aligned_cols=148 Identities=21% Similarity=0.175 Sum_probs=105.7
Q ss_pred eEEEcCCcchHHHHHHHHH-hCCCCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-Chhh
Q 004970 143 RFVLSAGHGCMLQYALLHL-AGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGI 220 (721)
Q Consensus 143 ~~V~s~Gh~~~~~y~~l~l-~G~~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~ 220 (721)
+.|+..+-+|+.++...+. +.+ .+....+.+|-+.+.|.|++.|.+.++ .+..|||+.|||.+ .-|
T Consensus 40 ~~vi~~~iGC~s~~~~~~p~~~~-~~~~~~~~fg~~~a~a~Gi~~a~~~~~----------~~~~Vv~~~GDG~~~dIG- 107 (299)
T PRK11865 40 NTVIVVATGCLEVITTPYPETAW-NVPWIHVAFENAAAVASGIERAVKALG----------KKVNVVAIGGDGGTADIG- 107 (299)
T ss_pred CEEEEeCCCcccccCccCcCCcc-ccccchhhhcchHHHHHHHHHHHHHhc----------CCCeEEEEeCCchHhhcc-
Confidence 3455566667443322111 111 456678899999999999999987543 15689999999988 434
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccc-----c-----------------ccccccHHHHHhhCCCeEEEeccCCC
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDT-----E-----------------IAFTENVDKRFEGLGWHVIWVKNGNT 278 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~-----~-----------------~~~~~~~~~~~~a~G~~~~~v~dG~~ 278 (721)
+++|..|...+.+.+++|+||.-|+..+.. . .....|+.+++.++|..|+..++-.
T Consensus 108 -~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~- 185 (299)
T PRK11865 108 -FQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIG- 185 (299)
T ss_pred -HHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCC-
Confidence 489999999998655555555555433221 1 0113578899999999888665767
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 279 GYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 279 d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
|+.++.+++++|.+ .++|++|++.+.
T Consensus 186 ~~~~l~~~i~~A~~-~~Gps~I~v~sP 211 (299)
T PRK11865 186 YPEDFMEKVKKAKE-VEGPAYIQVLQP 211 (299)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEEECC
Confidence 89999999999998 789999999865
No 156
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=1.1e-06 Score=97.39 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=143.0
Q ss_pred chHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCC
Q 004970 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 545 (721)
Q Consensus 466 IaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPn 545 (721)
=+|..++++|.|.|..|. |.+..|=++=+.+|.|.+...+...+|++++. .+-+.+.-..+|....|+...|.. +
T Consensus 57 EsE~aA~~~~~GAs~aGa--Ra~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv--~~R~~~~p~~i~~d~~D~~~~rd~-g 131 (394)
T PRK08367 57 ESEHSAISACVGASAAGV--RTFTATASQGLALMHEVLFIAAGMRLPIVMAI--GNRALSAPINIWNDWQDTISQRDT-G 131 (394)
T ss_pred CCHHHHHHHHHHHHhhCC--CeEeeeccchHHHHhhHHHHHHHccCCEEEEE--CCCCCCCCCCcCcchHHHHhcccc-C
Confidence 479999999999999995 99999888888999999999999999988886 222334333566666676555554 4
Q ss_pred cEEEeeCCHHHHHHHHHHHHHcC-----CCcEEEEEcC-------CCC--CC-------CCC--------Cccccc----
Q 004970 546 ILMLRPADGNETAGAYKVAVANR-----KRPSILALSR-------QKL--PH-------LAG--------TSIDGV---- 592 (721)
Q Consensus 546 l~V~~P~d~~e~~~~l~~a~~~~-----~~P~~Irl~r-------~~~--~~-------~~~--------~~~~~~---- 592 (721)
+.++.|.|.+|+..+...|++-. .-|+++++.- +++ |. ++. +...+.
T Consensus 132 ~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~ 211 (394)
T PRK08367 132 WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGA 211 (394)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCC
Confidence 77888999999999888777432 2599887632 110 00 000 000000
Q ss_pred ----------------------------------cCc-cEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceE
Q 004970 593 ----------------------------------EKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 637 (721)
Q Consensus 593 ----------------------------------~~G-~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~ 637 (721)
..| +|...+.-+....|+.||++|+....+.+|.+.|+++|+++.
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVG 291 (394)
T PRK08367 212 LAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVG 291 (394)
T ss_pred CCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcce
Confidence 012 122222100014789999999999999999999999999999
Q ss_pred EEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccc
Q 004970 638 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 677 (721)
Q Consensus 638 VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~ 677 (721)
++-++.+.||+.+.+ +.+++.. +.++++|-....|.
T Consensus 292 llri~~~rPFP~~~i---~~~l~~~-k~ViVvE~n~s~g~ 327 (394)
T PRK08367 292 AAKLTVYRPFPVEEI---RALAKKA-KVLAFLEKNISFGL 327 (394)
T ss_pred eEEEeEecCCCHHHH---HHHHccC-CEEEEEeCCCCCCC
Confidence 999999999999865 3455544 44599998876553
No 157
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.71 E-value=6.8e-07 Score=98.77 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCC
Q 004970 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 545 (721)
Q Consensus 466 IaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPn 545 (721)
=+|..++++|.|.|..|. |.++.|=..=+.+|.|.|..++...+|++++.. .+.+.+ .++||....|+-+.+.- +
T Consensus 56 E~E~aA~~~aiGAs~aGa--Ra~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~-~R~~p~-~~~~~~~q~D~~~~~d~-g 130 (390)
T PRK08366 56 ESEHSAMAACIGASAAGA--RAFTATSAQGLALMHEMLHWAAGARLPIVMVDV-NRAMAP-PWSVWDDQTDSLAQRDT-G 130 (390)
T ss_pred CCHHHHHHHHHHHHhhCC--CeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe-ccCCCC-CCCCcchhhHHHHHhhc-C
Confidence 479999999999999995 999999888889999999999999999887652 444443 56888777887766654 8
Q ss_pred cEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCC--CC-------CC---C-----Ccccccc-----
Q 004970 546 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKL--PH-------LA---G-----TSIDGVE----- 593 (721)
Q Consensus 546 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r-------~~~--~~-------~~---~-----~~~~~~~----- 593 (721)
+.+++|+|.+|+..+...|++ +..-|++++... ..+ +. ++ . ....++.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 899999999999998887774 356799887631 110 00 00 0 0000000
Q ss_pred ---------------------------------Ccc-EE-EecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEE
Q 004970 594 ---------------------------------KGA-YI-ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 638 (721)
Q Consensus 594 ---------------------------------~G~-~~-v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 638 (721)
.|. |. ..+.-.....|+.||++|+....+.+|.+.|+++|+++.+
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 110 11 0010000146899999999999999999999999999999
Q ss_pred EecCchhhhHHHHHHHhhhhcccCCceEEEEccccccc
Q 004970 639 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 676 (721)
Q Consensus 639 I~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G 676 (721)
+-++++.||+.+.+. .+++.. +.++++|.....|
T Consensus 291 l~i~~~~PfP~~~i~---~~l~~~-k~ViVvE~n~~~G 324 (390)
T PRK08366 291 AKVRWFRPFPKEELY---EIAESV-KGIAVLDRNFSFG 324 (390)
T ss_pred EEEeeecCCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999997652 355543 4459999987644
No 158
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.69 E-value=6.4e-07 Score=103.96 Aligned_cols=212 Identities=20% Similarity=0.152 Sum_probs=148.7
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHH
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 539 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~ 539 (721)
-.+--.=.|..++++|.|.|..|. |.++.|=..=+.+|.|.+..++...+|++++. .++.+.+..-+|+....|+-+
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~--Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~-~~R~gpstg~~t~~eq~D~~~ 314 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGA--RAMTATSGPGFALMTEALGLAGMTETPLVIVD-VQRGGPSTGLPTKTEQSDLLF 314 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCC--ceeecCCCCChhHhHHHHhHHHhccCCEEEEE-cccCCCCCCCCCCccHHHHHH
Confidence 344445899999999999999995 99998877778899999988888999977775 355544444578888888776
Q ss_pred HhcCC----CcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC--CC---CC----------------
Q 004970 540 FRAMP----NILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL--PH---LA---------------- 585 (721)
Q Consensus 540 lr~iP----nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~------r~~~--~~---~~---------------- 585 (721)
.+.-- ++.|++|.|.+|+..+...|++ +..-|++++.. ++++ |. +.
T Consensus 315 ~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (562)
T TIGR03710 315 ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKR 394 (562)
T ss_pred HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCC
Confidence 66432 3799999999999998887774 25679988752 1111 00 00
Q ss_pred ---CC-ccccc-cCc---------------------------------------------cEEEecCCCCCCCCEEEEEe
Q 004970 586 ---GT-SIDGV-EKG---------------------------------------------AYIISDNSSGNKPDVILIGT 615 (721)
Q Consensus 586 ---~~-~~~~~-~~G---------------------------------------------~~~v~~~~~~~g~dvtIva~ 615 (721)
++ ...+. ..| .+..... ...|+.||++
T Consensus 395 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~---~da~~~iv~~ 471 (562)
T TIGR03710 395 YELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGD---EDADVLVIGW 471 (562)
T ss_pred CCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecC---CCCCEEEEEe
Confidence 00 00000 001 0111111 1467999999
Q ss_pred ChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhh
Q 004970 616 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 616 G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v 681 (721)
|++...+.+|.+.|+++|+++.++.++++.||+.+.+. ..++.. +.++++|.....-+...+
T Consensus 472 Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~v~VvE~n~~Gql~~~v 533 (562)
T TIGR03710 472 GSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELA---ELLEGA-KKVIVVEQNATGQLAKLL 533 (562)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEccChhhhHHHHH
Confidence 99999999999999999999999999999999987552 344433 445889998553344433
No 159
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.49 E-value=2.8e-05 Score=91.45 Aligned_cols=451 Identities=15% Similarity=0.176 Sum_probs=233.6
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHhcC--CCeEEEEEECCCcc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLG--LGKLIAFYDDNHIS 246 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~~~--L~~li~IvddN~~~ 246 (721)
.-.||=.--|+-.|.+-|..... +..+. ....-+.+.||.+++ +|.+.|.+++....+ .+..+-|+-||+++
T Consensus 296 NPSHLE~v~PVV~G~vRa~Qd~~---~d~~~--~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiG 370 (906)
T COG0567 296 NPSHLEIVNPVVEGSVRAKQDRL---GDTER--DKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIG 370 (906)
T ss_pred CcchhhhhchhhhcchHhhhhhh---ccCcc--ceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCC
Confidence 44556566788888888765332 11110 122335899999997 899999999988654 45677777788776
Q ss_pred ccccccc----cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcc
Q 004970 247 IDGDTEI----AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSV 319 (721)
Q Consensus 247 i~~~~~~----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~ 319 (721)
-.+.... ....|++ +.++..++.| ||. |++++..+.+.|.+ .-.++++|.+.+++-+||-..+++...
T Consensus 371 FTTsp~~sRSt~Y~TDvA---Km~~aPifHV-N~D-DPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~T 445 (906)
T COG0567 371 FTTSPADARSTPYCTDVA---KMIEAPIFHV-NAD-DPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVT 445 (906)
T ss_pred CCCCcccccCCCCCCChh---hccCCceeec-ccC-CchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccccc
Confidence 6554322 1234554 4456788888 999 99999888877644 357899999999999999866433211
Q ss_pred cCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhCh---HHHHHHH--HHhcCCC
Q 004970 320 HGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYP---EEAAEFK--SISSGQL 393 (721)
Q Consensus 320 H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p---~~~~~~~--~~~~~~~ 393 (721)
.+.-++..++. | .+.+.|.+ ++.++.....+.....++++...- +..+... +++...-
T Consensus 446 -----qP~mY~~I~~h------~-----t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~ 509 (906)
T COG0567 446 -----QPLMYQKIKKH------P-----TVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYKEMDWLEGDW 509 (906)
T ss_pred -----CHHHHHHHhcC------C-----ChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHHhhhcccccc
Confidence 11122222211 0 01122322 112222211111111111111000 0000000 0000000
Q ss_pred -------CCcccc---------------cCCC-CC----------------CCCcchhHHHHHHHHHHHHHHhCCCeEEE
Q 004970 394 -------PAGWEK---------------ALPT-YT----------------PESPAEATRNLSQTCLNALAKTLPGLLGG 434 (721)
Q Consensus 394 -------p~~~~~---------------~~p~-~~----------------~~~~~~~~r~a~~~~L~~l~~~~p~vv~~ 434 (721)
+..... .+|. +. .+....+...+=.-+...+......+.+-
T Consensus 510 ~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRls 589 (906)
T COG0567 510 SGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLS 589 (906)
T ss_pred ccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccc
Confidence 000000 0010 00 00001111111111112233344556666
Q ss_pred eccCCCcccchh-------c------ccccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHH---H
Q 004970 435 SADLASSNMTLL-------K------MFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFT---D 497 (721)
Q Consensus 435 saDl~~s~~~~~-------~------~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~---~ 497 (721)
+.|.+..+-... + .+..+....-.=.++|.+++|.+++|+=-|.+..-.....++ ..|.+|. |
T Consensus 590 GqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQ 669 (906)
T COG0567 590 GQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQ 669 (906)
T ss_pred cccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCe
Confidence 667654321100 0 001111101112367999999999999999999874222333 4688886 3
Q ss_pred hHHHHHHHhh----hcCCcEEEEEecCCcccCCCCCCCCChhhhHHH--hcCCCcEEEeeCCHHHHHHHHHH-HHHcCCC
Q 004970 498 YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF--RAMPNILMLRPADGNETAGAYKV-AVANRKR 570 (721)
Q Consensus 498 r~~dqir~~a----~~~~pV~~v~t~~g~~~g~dG~THq~~edia~l--r~iPnl~V~~P~d~~e~~~~l~~-a~~~~~~ 570 (721)
..+||.-.+. ...+.+++... .|+ -..||.|.+--...+| .+=-||+|..|+++.....+++. +++....
T Consensus 670 vviDQfisSge~KW~r~sgLv~lLP-Hgy--EGQGPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rk 746 (906)
T COG0567 670 VVIDQFISSGEQKWGRMSGLVMLLP-HGY--EGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRK 746 (906)
T ss_pred eeeccccccHHHHHHHhcCceEEcc-CCC--CCCCCcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccC
Confidence 5677754432 23456666653 334 3378999765444443 44559999999999999999985 4455568
Q ss_pred cEEEEEcCCCCCCCC-CCccccccCccEE-EecCCCCCCC--CEEEEEeChhHHHHHHHHHHHHhCC-CceEEEecCchh
Q 004970 571 PSILALSRQKLPHLA-GTSIDGVEKGAYI-ISDNSSGNKP--DVILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVSWE 645 (721)
Q Consensus 571 P~~Irl~r~~~~~~~-~~~~~~~~~G~~~-v~~~~~~~g~--dvtIva~G~~v~~al~Aa~~L~~~G-i~~~VI~~~sl~ 645 (721)
|.+|..||..+..-. ..+...+..|.+. ++.+.....+ .-++++.|-+.....+. +++.| .++.+|=+..+-
T Consensus 747 PLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~~---r~~~g~~dvaiiRiEqLy 823 (906)
T COG0567 747 PLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLEQ---REKDGRDDVAIVRIEQLY 823 (906)
T ss_pred ceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHHH---HhhcCCcceeEEeeeccc
Confidence 998887776543110 0111222223222 1211000012 33455555555433322 24444 367778888899
Q ss_pred hhHHHHH
Q 004970 646 LFDEQSD 652 (721)
Q Consensus 646 pld~~~~ 652 (721)
||..+.+
T Consensus 824 PfP~~~l 830 (906)
T COG0567 824 PFPAKAL 830 (906)
T ss_pred CchHHHH
Confidence 9998765
No 160
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.39 E-value=2.3e-07 Score=96.36 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=94.5
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
..|+|||.+|+|+|+..|.+ ++.++++-||-.|| ...|+|...++++|+-+-+++||..+++..
T Consensus 417 qagplgwtipaalgv~~adp--------------~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglir 480 (592)
T COG3960 417 QAGPLGWTIPAALGVCAADP--------------KRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIR 480 (592)
T ss_pred ccCCcccccchhhceeecCC--------------CCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHH
Confidence 47999999999999988876 77899999999999 999999999999997777777766666554
Q ss_pred ccccc---------------------ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEe
Q 004970 250 DTEIA---------------------FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTT 305 (721)
Q Consensus 250 ~~~~~---------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~ 305 (721)
+.+.. ..-|-.+..+++|++.++| . +++++..||++|+. ...-|+++++.-.
T Consensus 481 qaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~-~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 481 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe---c-ChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 43311 1234567789999999999 4 89999999998865 3578999988755
Q ss_pred e
Q 004970 306 I 306 (721)
Q Consensus 306 k 306 (721)
+
T Consensus 557 r 557 (592)
T COG3960 557 R 557 (592)
T ss_pred H
Confidence 4
No 161
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.00072 Score=76.73 Aligned_cols=469 Identities=14% Similarity=0.158 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHh--cCCCeEEEEEECCCcccccccccc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGH--LGLGKLIAFYDDNHISIDGDTEIA 254 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~--~~L~~li~IvddN~~~i~~~~~~~ 254 (721)
=|..+|--.|..+.. .+-+.....-+.+-||++|. +|.++|.+.+..- |--+-.|.||-||+++..+.....
T Consensus 380 DPVV~GKtrA~q~y~-----~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~a 454 (1017)
T KOG0450|consen 380 DPVVMGKTRAEQFYT-----GDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFA 454 (1017)
T ss_pred CceeechHHHHHHhc-----cccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccc
Confidence 345556555555432 12222344568889999995 8999999877652 223346777778887765443322
Q ss_pred cccc-HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCCCChhhHH
Q 004970 255 FTEN-VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVD 330 (721)
Q Consensus 255 ~~~~-~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~ 330 (721)
.... -.+.+++.+...+-| |++ |++++.-+.+-|.+ .-.+-++|.+.++|-+||-..+.+ .+- .+--++
T Consensus 455 RSspYcTDvar~v~aPIFHV-NaD-D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FT----QPlMYk 527 (1017)
T KOG0450|consen 455 RSSPYCTDVARVVNAPIFHV-NAD-DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFT----QPLMYK 527 (1017)
T ss_pred cCCCCchhHHHHhCCCeEee-cCC-ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-ccc----chHHHH
Confidence 1111 123455667788888 999 99999888876644 235779999999999999876432 111 122233
Q ss_pred HHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHH--------HHHHHHHhcCCCCCccc---
Q 004970 331 ATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEE--------AAEFKSISSGQLPAGWE--- 398 (721)
Q Consensus 331 ~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~p~~~~--- 398 (721)
..++. +.+++.|.+ .+.+|....++..+..++|.....+. ......|+..+-+-...
T Consensus 528 ~I~k~-----------~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~ 596 (1017)
T KOG0450|consen 528 QIRKH-----------KPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDG 596 (1017)
T ss_pred HHHcC-----------CcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccC
Confidence 33321 123455655 33455433333333222221111000 01112333321110000
Q ss_pred --c----------------------cCCC-CCC---------------CCcchhHHHHHHH--HHHHHHHhCCCeEEEec
Q 004970 399 --K----------------------ALPT-YTP---------------ESPAEATRNLSQT--CLNALAKTLPGLLGGSA 436 (721)
Q Consensus 399 --~----------------------~~p~-~~~---------------~~~~~~~r~a~~~--~L~~l~~~~p~vv~~sa 436 (721)
+ .+|+ |.. ++..+++ +.+. ++..|.++.-.|.+-+.
T Consensus 597 ~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~~~iDw--al~EalAFgsLl~EG~hVRlSGQ 674 (1017)
T KOG0450|consen 597 QPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKSEGVDW--ALAEALAFGSLLKEGIHVRLSGQ 674 (1017)
T ss_pred CCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhhcccch--HHHHHHHHHHHHhcCceEEeecc
Confidence 0 0110 100 0000111 2222 23356667777888899
Q ss_pred cCCCcccchh-ccc-------------ccCcccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHH---Hh
Q 004970 437 DLASSNMTLL-KMF-------------GDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFT---DY 498 (721)
Q Consensus 437 Dl~~s~~~~~-~~~-------------~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~---~r 498 (721)
|+...+.... ..+ ..+..+.-|=-+-|.-++|-+.+|+--|+++.......++ ..|.+|. |.
T Consensus 675 DVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~ 754 (1017)
T KOG0450|consen 675 DVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQC 754 (1017)
T ss_pred cccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchh
Confidence 9865432210 001 1111111122356889999999999999999886445555 4788886 56
Q ss_pred HHHHHHHhh----hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHh-------cCC-------------CcEEEeeCCH
Q 004970 499 MRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-------AMP-------------NILMLRPADG 554 (721)
Q Consensus 499 ~~dqir~~a----~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr-------~iP-------------nl~V~~P~d~ 554 (721)
.+||.-..+ +....+++.. +.|+ -..||-|.+---.-+|. .+| |+.|+.+++|
T Consensus 755 IiDQFIssGqaKW~rqsGlVllL-PHGy--eG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTP 831 (1017)
T KOG0450|consen 755 IIDQFISSGQAKWVRQSGLVLLL-PHGY--EGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTP 831 (1017)
T ss_pred hHHhHhccchhhhhhhcCeEEEc-cCCc--CCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCCh
Confidence 789865432 3455666655 4555 34789896543333321 122 5689999999
Q ss_pred HHHHHHHHHHHH-cCCCcEEEEEcCCCCCCCCC-Ccccccc-----------CccEEEecCCCCCCCCEEEEEeChhHHH
Q 004970 555 NETAGAYKVAVA-NRKRPSILALSRQKLPHLAG-TSIDGVE-----------KGAYIISDNSSGNKPDVILIGTGSELEI 621 (721)
Q Consensus 555 ~e~~~~l~~a~~-~~~~P~~Irl~r~~~~~~~~-~~~~~~~-----------~G~~~v~~~~~~~g~dvtIva~G~~v~~ 621 (721)
.....+|+.-+. .-..|.+|..||.-+..... .+...+. -|+.....+ +-+=.|+.+|-....
T Consensus 832 aNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe----~vkrlv~csGkVyyd 907 (1017)
T KOG0450|consen 832 ANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPE----NVKRLVFCSGKVYYD 907 (1017)
T ss_pred HHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChh----hceEEEEecceEehh
Confidence 999999997663 24579999988764421100 0111111 122222222 345677888987765
Q ss_pred HHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcc-cCCceEEEEcccccccchhhh
Q 004970 622 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 622 al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~-~~~~~~v~vE~~~~~G~~~~v 681 (721)
--++.+.... --++.+.-+-.|.||..+.+. +++.+ -+..++---||+...|.-.|+
T Consensus 908 L~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~--~e~~~YpnaEivWcQEE~~NmG~w~Yv 965 (1017)
T KOG0450|consen 908 LTKERKEVGL-EGDVAITRVEQLSPFPFDLIQ--QELNKYPNAEIVWCQEEHKNMGAWDYV 965 (1017)
T ss_pred hhHHHHhcCc-ccceeEEEeeccCCCcHHHHH--HHHHhCCCceeeehhhhhcccCchhhc
Confidence 5555444321 134566666667776665442 22221 133454556888777754444
No 162
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.12 E-value=9.8e-05 Score=92.19 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=136.0
Q ss_pred cccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHH
Q 004970 461 NVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 540 (721)
Q Consensus 461 ~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~l 540 (721)
|+.+ =+|.+.++++.|.+..|. +....|=+.=+.+|.+.+...+-+.+|+++... .+.+.+..+..|....|+...
T Consensus 54 ~vq~-EsE~~A~~av~GA~~aGa--ra~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va-~R~~~~~~~~i~~dh~Dv~~~ 129 (1165)
T TIGR02176 54 VVEM-QSEAGAAGAVHGALQTGA--LTTTFTASQGLLLMIPNMYKIAGELLPCVFHVS-ARAIAAHALSIFGDHQDVMAA 129 (1165)
T ss_pred EEEc-cchHHHHHHHHhHhhcCC--CEEEecChhHHHHHHHHHHHHHhccCCEEEEEe-cCCCCCCCCccCCCchHHHHh
Confidence 4443 589999999999999994 777777666677888888766656899877762 333222223445445576666
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCCCCC--------CCC-cc-----------c
Q 004970 541 RAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKLPHL--------AGT-SI-----------D 590 (721)
Q Consensus 541 r~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r-------~~~~~~--------~~~-~~-----------~ 590 (721)
|.. |..|++|.+.+|+..+-..|.+ +...|+++.+.- +++... ... .. .
T Consensus 130 R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 208 (1165)
T TIGR02176 130 RQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEH 208 (1165)
T ss_pred hcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCC
Confidence 654 6799999999999887665542 246788886531 011000 000 00 0
Q ss_pred cc--------------------------------------cCc-cEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHh
Q 004970 591 GV--------------------------------------EKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK 631 (721)
Q Consensus 591 ~~--------------------------------------~~G-~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~ 631 (721)
+. ..| .|...+.-+....+++||++|+....+.+|.+.|++
T Consensus 209 p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~ 288 (1165)
T TIGR02176 209 PHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNA 288 (1165)
T ss_pred CceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 00 012 111111100014689999999999999999999999
Q ss_pred CCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccccc
Q 004970 632 GGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 676 (721)
Q Consensus 632 ~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G 676 (721)
+|++|.+|.++.+.||+.+.+. .+++.+.+.++++|-....|
T Consensus 289 ~G~kVGli~vr~~rPFp~e~l~---~aLp~svK~I~Vler~~~~g 330 (1165)
T TIGR02176 289 KGEKVGLLKVRLYRPFSAETFF---AALPKSVKRIAVLDRTKEPG 330 (1165)
T ss_pred cCCceeEEEEeEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCC
Confidence 9999999999999999987652 44543444458888875433
No 163
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.80 E-value=0.00043 Score=78.75 Aligned_cols=201 Identities=15% Similarity=0.163 Sum_probs=134.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCC--cEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA--GVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~--pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
+-+++.+..|-.+..+|.|.+..| .+.++++=-.=+.++.|.+...+|... .++++...| - |. .+-|.-.|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G--~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~aDD-p--g~--~SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAG--VRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVVADD-P--GM--HSSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcC--ceeeEEecccccccchhhhhhhhhcCccccEEEEEccC-C--Cc--ccccchhH
Confidence 678899999999999999999999 488888766667889999888777543 344443221 1 11 11244456
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCCC-------CCCCCc-cccccCccEEE
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKLP-------HLAGTS-IDGVEKGAYII 599 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~~~-------~~~~~~-~~~~~~G~~~v 599 (721)
--++...-.+-|+.|+|++|+..+.+.+++ ....|+.+|... +.+. ....+. ...-..|.|+.
T Consensus 131 sr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~ 210 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVR 210 (640)
T ss_pred hHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceee
Confidence 667777788899999999999999998884 356799998632 1110 000000 00011222322
Q ss_pred e-----------------------------c-CCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHH
Q 004970 600 S-----------------------------D-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDE 649 (721)
Q Consensus 600 ~-----------------------------~-~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~ 649 (721)
. + .+ .+..++=||+.|-...-+.+|. ++.|++..++-+-+..||+.
T Consensus 211 ~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~-~~~~~lGII~~G~ay~yVkeAl---~~lgl~~~~lklg~~~Plp~ 286 (640)
T COG4231 211 VPANALRHRHRKLLEKWEAAEEFINANPLNRVEG-SDDAKLGIIASGIAYNYVKEAL---EDLGLDDELLKLGTPYPLPE 286 (640)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhCccccccc-CCCCceEEEecCccHHHHHHHH---HHcCCCceeEEecCCcCCCH
Confidence 1 1 11 0126899999999998887774 45589999999999999999
Q ss_pred HHHHHhhhhcccCCceEEEEccccc
Q 004970 650 QSDAYKESVLPAAVSARVSIEAGST 674 (721)
Q Consensus 650 ~~~~~~~~v~~~~~~~~v~vE~~~~ 674 (721)
+.++ +.++ +...+++|||...
T Consensus 287 ~~i~---~F~~-g~~~vlVVEE~~P 307 (640)
T COG4231 287 QLIE---NFLK-GLERVLVVEEGEP 307 (640)
T ss_pred HHHH---HHHh-cCcEEEEEecCCc
Confidence 8764 3333 3334599999876
No 164
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.71 E-value=0.00011 Score=83.50 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
++-.||.|++.|-|++++. .+++++++|||.|- .|+. ++..|...+.+.+++|+||.--.+.
T Consensus 426 ~t~~mGssig~a~g~~~~~---------------~k~~va~iGDsTF~HsGi~--~l~nAV~n~~~~~~vvLdN~~tAMT 488 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS---------------TKKIVAVIGDSTFFHSGIL--ALINAVYNKANILVVVLDNRTTAMT 488 (640)
T ss_pred hhhhccchhhhcccccccc---------------CCceEEEeccccccccCcH--HHHHHHhcCCCeEEEEEeccchhcc
Confidence 4566787888888887654 46799999999995 5554 6999999998777777776655555
Q ss_pred ccccc-----------cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 249 GDTEI-----------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 249 ~~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
+.... ...-++.+..+++|...+.++|=+ |.+++.+++++|++ ..+|.+|+++-
T Consensus 489 GgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~-~~~~~~~~~keale-~~gpsViiak~ 553 (640)
T COG4231 489 GGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPY-DVKELSEAIKEALE-VPGPSVIIAKR 553 (640)
T ss_pred CCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCc-chHHHHHHHHHHhc-CCCceEEEEcC
Confidence 44321 223468889999999999887867 99999999999998 78899998763
No 165
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.68 E-value=0.00037 Score=74.23 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=86.1
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCC-ccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG-~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
.+.-|-.++.|.|+.+|.+ +..||++-||| ++. +-...+..+.+.+.+..++++||--|+..+
T Consensus 69 hs~~gra~a~atGik~A~~--------------~l~Viv~gGDG~~~d--IG~~~l~h~~~Rn~dit~iv~DNevYgnTg 132 (294)
T COG1013 69 HSLHGRAAAVATGIKLANP--------------ALSVIVIGGDGDAYD--IGGNHLIHALRRNHDITYIVVDNEVYGNTG 132 (294)
T ss_pred eeccCcchhhHHHHHHhcc--------------CCeEEEEecchhHhh--hhhHHHHHHHHcCCCeEEEEECCeecccCC
Confidence 3556778999999999988 56899999999 555 445589999999986666666666665443
Q ss_pred ccc-c----------------c-ccccHHHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 250 DTE-I----------------A-FTENVDKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 250 ~~~-~----------------~-~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
-.. . . ..-|+..++-++|..++ ++.-| ++.++.+.+++|.+ .++|++|++.+.
T Consensus 133 gQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~--~~~~l~~~i~kA~~-~~Gps~I~v~sP 204 (294)
T COG1013 133 GQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVG--DPKDLTEKIKKAAE-HKGPSFIDVLSP 204 (294)
T ss_pred CccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEeccc--CHHHHHHHHHHHHh-ccCCeEEEEecC
Confidence 221 0 0 22378888999998766 33233 68999999999988 789999999875
No 166
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.60 E-value=0.0012 Score=74.32 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=119.1
Q ss_pred cHHHHHHH---HHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHH
Q 004970 84 DAALVEKS---VNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLH 160 (721)
Q Consensus 84 ~~~~l~~~---a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~ 160 (721)
.++-|++. .+..|..+.+.+ .+| .+.-+.+...|-.. . | +.|.+++++.--...+-.+..
T Consensus 346 ~~~Wl~~~~~~~~~~~~~v~~~~----~~~---~~~e~~~a~~l~~~---l-p------~~~~LFvgNSmpVRdvd~~~~ 408 (566)
T COG1165 346 RKPWLDEWLALNEKARQAVRDQL----AAE---ALTEAHLAAALADL---L-P------PQDQLFVGNSMPVRDVDALGQ 408 (566)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh----ccc---CchhhHHHHHHHHh---C-C------CCCeEEEecCchhhhHHHhcc
Confidence 33545543 344444444433 334 45555555555544 3 2 567777776655444433333
Q ss_pred H-hCCCCcccCccccch--hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEE
Q 004970 161 L-AGYDSVQVTTGPLGQ--GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 237 (721)
Q Consensus 161 l-~G~~gie~~~G~lG~--gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li 237 (721)
+ .|+ .+-.+-|.-|- -+|-|+|++.|.. .+++.++||=+|-.-++ +|........+-.|
T Consensus 409 ~~~~~-~v~sNRGA~GIDG~vSTA~Gi~~a~~---------------~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltI 470 (566)
T COG1165 409 LPAGY-RVYSNRGASGIDGTVSTALGIARATQ---------------KPTVALIGDLSFLHDLN--GLLLLKKVPQPLTI 470 (566)
T ss_pred CccCc-eeecCCCccccchhHHHHhhhhhhcC---------------CceEEEEechhhhhccc--hHhhcCCCCCCeEE
Confidence 2 232 12223444443 4788999998753 45999999999974333 66667788887889
Q ss_pred EEEECCCcccccccc----c---------cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEE
Q 004970 238 AFYDDNHISIDGDTE----I---------AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 238 ~IvddN~~~i~~~~~----~---------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T 304 (721)
||+||||-+|-.... . -..-|+....+.||.++..+ + +++++.++++.+-. ..+-++||++|
T Consensus 471 vv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~---~-s~~~l~~~~~~~~~-~~g~~viEvkt 545 (566)
T COG1165 471 VVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRP---Q-SWDELGEALDQAWR-RSGTTVIEVKT 545 (566)
T ss_pred EEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHHhCcccccc---C-cHHHHHHHHhhhcc-CCCcEEEEEec
Confidence 999999987754321 1 12347888999999999998 4 89999999998875 56789999999
Q ss_pred ee
Q 004970 305 TI 306 (721)
Q Consensus 305 ~k 306 (721)
.+
T Consensus 546 ~r 547 (566)
T COG1165 546 DR 547 (566)
T ss_pred Ch
Confidence 76
No 167
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.46 E-value=0.0096 Score=65.65 Aligned_cols=180 Identities=19% Similarity=0.190 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCC
Q 004970 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 545 (721)
Q Consensus 466 IaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPn 545 (721)
=+|.+.++++.|.+..|. +.+..|-+.=+.+|.+.+..++.+.+|++++.. .+.+....=+|+....|+...|.. +
T Consensus 54 EsE~~a~s~v~GA~~aGa--r~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~-~R~~ps~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 54 ESEIGAISAVIGASYAGA--RAFTATSGQGLLLMAEALGLAAGTETPLVIVVA-QRPLPSTGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred ccHHHHHHHHHHHHhhCc--ceEeecCCccHHHHHHHHHHHHhccCCeEEEEe-ccCcCCCcccccccHHHHHHHHcc-C
Confidence 478999999999999995 888888888888999999999999999877763 333334334589888899888876 8
Q ss_pred cEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc--------------CCCCC-----CCCC----CccccccCc----
Q 004970 546 ILMLRPADGNETAGAYKVAVA---NRKRPSILALS--------------RQKLP-----HLAG----TSIDGVEKG---- 595 (721)
Q Consensus 546 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~--------------r~~~~-----~~~~----~~~~~~~~G---- 595 (721)
..+++=+|.+|+..+-..|++ +..-|+++.+. +.+.+ .... ....+...|
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 877777788888765554442 13567776531 11100 0000 000000001
Q ss_pred -----------------------------------c---EEEecCCCCCCCCEEEEEeChhHHHHHHHHHHH-HhCCCce
Q 004970 596 -----------------------------------A---YIISDNSSGNKPDVILIGTGSELEIAAKAAEEL-RKGGKAV 636 (721)
Q Consensus 596 -----------------------------------~---~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L-~~~Gi~~ 636 (721)
. +.+... ...+++||++|+....+.+++..+ +++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~---~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kv 286 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGY---EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKV 286 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecC---CCcCEEEEEeccchHhHHHHHHHHHHhcCceE
Confidence 0 111111 146799999998887777776655 5889999
Q ss_pred EEEecCchhhhHHHHH
Q 004970 637 RVVSFVSWELFDEQSD 652 (721)
Q Consensus 637 ~VI~~~sl~pld~~~~ 652 (721)
.++.++.+.||+.+.+
T Consensus 287 g~l~vr~~rPFp~~~i 302 (365)
T COG0674 287 GLLKVRTLRPFPAEEI 302 (365)
T ss_pred EEEEEEEeCCCCHHHH
Confidence 9999999999998765
No 168
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.14 E-value=0.25 Score=54.44 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=69.1
Q ss_pred cccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHH-HH--HHhcCCCeEEEEEECCCcc-c
Q 004970 172 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SL--AGHLGLGKLIAFYDDNHIS-I 247 (721)
Q Consensus 172 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal-~~--a~~~~L~~li~IvddN~~~-i 247 (721)
..=|.+++.|.|+.+|. .++-++++=-.++. -....| ++ ...+++ |+++|+-..+.- .
T Consensus 33 ~~E~~av~iaaG~~lat---------------G~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~i-P~l~~i~~RG~~g~ 94 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT---------------GKRAAVYMQNSGLG--NAVNPLTSLADTEVYDI-PLLLIVGWRGEPGV 94 (361)
T ss_pred CCchHHHHHHHHHHHhc---------------CCccEEEEecCchh--hhhhHHHhhccccccCc-CeeEEEecCCCCCC
Confidence 34578889999998872 12455565444443 344454 23 467899 566776666542 1
Q ss_pred -cccccccccccHHHHHhhCCCeEEEecc-CCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 248 -DGDTEIAFTENVDKRFEGLGWHVIWVKN-GNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 248 -~~~~~~~~~~~~~~~~~a~G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
+.+.......-..++++++|+++..+.+ ...+.+.+.++++.+.+ .++|+.|.+.
T Consensus 95 ~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~-~~~p~a~l~~ 151 (361)
T TIGR03297 95 HDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALA-TSRPYALVVR 151 (361)
T ss_pred CCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHH-HCCCEEEEEc
Confidence 1122233445567899999999998721 11013456666766666 7899988665
No 169
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=96.92 E-value=0.0035 Score=64.66 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcC
Q 004970 464 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 543 (721)
Q Consensus 464 ~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~i 543 (721)
-.-.|..+++++.|.|+.|. |.++.|=..=+.+|.|.|...+..++|++++.. .+.+.+..+++|+...|+-+.+ -
T Consensus 41 ~~E~E~~A~~~~~GAs~aG~--ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~-~R~g~~~g~~~~~~q~D~~~~~-d 116 (230)
T PF01855_consen 41 QAESEHAAMEAAIGASAAGA--RAMTATSGPGLNLMAEPLYWAAGTELPIVIVVV-QRAGPSPGLSTQPEQDDLMAAR-D 116 (230)
T ss_dssp E-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEEE-EB---SSSB--SB-SHHHHHTT-T
T ss_pred EecchHHHHHHHHHHHhcCC--ceEEeecCCcccccHhHHHHHHHcCCCEEEEEE-ECCCCCCCCcCcCChhHHHHHH-h
Confidence 34789999999999999995 999988788888899999999999999777763 4444454578898888987777 4
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 004970 544 PNILMLRPADGNETAGAYKVAVA---NRKRPSILALS 577 (721)
Q Consensus 544 Pnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~ 577 (721)
-++.|+.|+|.+|+..+...|++ +...|++++..
T Consensus 117 ~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 117 SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 57789999999999998887763 24679999874
No 170
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.82 E-value=0.0042 Score=76.75 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=85.1
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHhcCCCeEEEEEECCCccc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISI 247 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~~~L~~li~IvddN~~~i 247 (721)
-+.-.||.+.+.++|++.+.+ +++||+++|||.|- .|+. ++..|...+.+.++.|++|.-..+
T Consensus 478 ~~~~~MG~eg~~~~G~a~f~~--------------~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAM 541 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPFTD--------------EKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAM 541 (1165)
T ss_pred CeeeccCCcchhhceeccccC--------------CCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccc
Confidence 356788999999999886532 46799999999995 5665 799999999877777777776677
Q ss_pred ccccc---ccccccHHHHHhhCCCeEEEec--cCCCCHHHH--------------HHHHHHHHhcCCCCEEEEEE
Q 004970 248 DGDTE---IAFTENVDKRFEGLGWHVIWVK--NGNTGYDDI--------------RAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 248 ~~~~~---~~~~~~~~~~~~a~G~~~~~v~--dG~~d~~~l--------------~~al~~a~~~~~~P~lI~~~ 303 (721)
.|... .....++.+.+++.|.+.+.++ |=. +++.. .++++++....+++++|+.+
T Consensus 542 TGgQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~-~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 542 TGGQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPE-KYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred cCCCCCCCCcchhhHHHHHHhCCCCEEEEeCCChh-hhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 66543 2244678899999999888776 333 44433 45566665326778877654
No 171
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.73 E-value=0.006 Score=75.64 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=80.6
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
+.-.||.+.+.++|++.+.. +.+||+++|||.|. .|+. ++..|...+.+.++.|++|.--.+.
T Consensus 466 ~~~~MG~~g~~~~G~a~~~~--------------~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMT 529 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFTE--------------TKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMT 529 (1159)
T ss_pred eeeccCccchhhceeccccC--------------CCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCccccc
Confidence 45689999999999987632 45799999999996 5665 9999999998767777777666666
Q ss_pred cccccccc---ccHHHHHhhCCCeEEEec--cCCCC-----HH--------HHHHHHHHHHhcCCCCEEEEEE
Q 004970 249 GDTEIAFT---ENVDKRFEGLGWHVIWVK--NGNTG-----YD--------DIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 249 ~~~~~~~~---~~~~~~~~a~G~~~~~v~--dG~~d-----~~--------~l~~al~~a~~~~~~P~lI~~~ 303 (721)
|....-.. +.+.+..++.|.+.+.++ |=. + +. +..++++++.+..++|++|+.+
T Consensus 530 GgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~-~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~ 601 (1159)
T PRK13030 530 GGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPE-KYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYD 601 (1159)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChh-hccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 65543222 344448889999888775 211 1 22 3445555555326778887644
No 172
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.63 E-value=0.017 Score=55.43 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=84.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
-|++.+ ..|..++.+|.|+++.+. -..++. +..+=+..+.+.|.++...+.|++++....+. ....-.+||...+.
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~-~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~-~~~~~~~~q~~d~~ 111 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATG-KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQV 111 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHC-CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcc-ccccCCcccccCHH
Confidence 466666 799999999999999864 133443 45666777888888888889999999743333 23333347777777
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSR 578 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r 578 (721)
.+++.+-.. .+...+++++...++.|++. .++|++|.+|+
T Consensus 112 ~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 112 ALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 888888654 67777888888888887754 25799998763
No 173
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.60 E-value=0.025 Score=54.73 Aligned_cols=114 Identities=16% Similarity=0.053 Sum_probs=80.6
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCC--CCCCCChh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED--GPTHQPIE 535 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~d--G~THq~~e 535 (721)
.-|++.+- .|+..+.+|.|.++.|+ +.++.+..+-+..+.+.+......+.|++++....+.. +.. ...||.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~--~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~-~~~~~~~~~~~~~ 116 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGA--RAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGP-STGLPKPDQSDLM 116 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCC--cEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCC-CCCCCCcCcHHHH
Confidence 45778775 99999999999999985 54445777888888888888766789999997443332 211 12234344
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS 577 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~Irl~ 577 (721)
...+++. -..++.+.+++|+..+++.|++. .++|++|++.
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 117 AARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4444433 56788899999998888877642 2479999863
No 174
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.52 E-value=0.015 Score=63.22 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=71.2
Q ss_pred CcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc-----ccc------------ccccccHHHHHhhC
Q 004970 204 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG-----DTE------------IAFTENVDKRFEGL 266 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~-----~~~------------~~~~~~~~~~~~a~ 266 (721)
+..||++.|||..- .+-+..+..+...+.+..++++||.-|+..+ .+. .....|+..++.++
T Consensus 151 ~~~v~v~gGDG~~y-dIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 151 KKSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred ccceEEEecchhhh-ccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 35799999999552 2445578788888876677777777675543 111 11235788899999
Q ss_pred CCeEEE-eccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 267 GWHVIW-VKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 267 G~~~~~-v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
|..|+- +.-|. ++.++.+++++|.+ .++|++|++.+.
T Consensus 230 g~~YVA~~s~~~-~~~~~~~~i~eA~~-~~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGA-NDNQTLKAFREAEA-YDGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEeccc-CHHHHHHHHHHHhc-CCCCEEEEEEcc
Confidence 976663 31244 79999999999998 899999999875
No 175
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.36 E-value=0.016 Score=71.66 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=81.0
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccC-hhhHHHHHHHHHhcCCCeEEEEEECCCcccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~-eG~~~Eal~~a~~~~L~~li~IvddN~~~i~ 248 (721)
+.-.||.+.+.++|++.+.+ +.+||+++|||.|. .|+. ++..|...+.+.++.|++|.-..+.
T Consensus 493 ~~~~MGgeg~~~~G~a~f~~--------------~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMT 556 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFSR--------------RRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMT 556 (1186)
T ss_pred eeeccCcchhhheeecccCC--------------CCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhcc
Confidence 45788999999999986532 45799999999995 5665 7999999998777777777766776
Q ss_pred cccccc---ccccHHHHHhhCCCeEEEecc--CCCCHH--------------HHHHHHHHHHhcCCCCEEEEEE
Q 004970 249 GDTEIA---FTENVDKRFEGLGWHVIWVKN--GNTGYD--------------DIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 249 ~~~~~~---~~~~~~~~~~a~G~~~~~v~d--G~~d~~--------------~l~~al~~a~~~~~~P~lI~~~ 303 (721)
+....- ..+.+....++.|.+-+.++| =. +++ +..+++++.....+++++|+.+
T Consensus 557 GgQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~-~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 557 GGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPG-KYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred CCCCCCCcCCHHHHHHHHHhCCccEEEEeCCCcc-ccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 655422 234455588999998887766 11 232 3344555555226678877654
No 176
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.36 E-value=0.025 Score=55.51 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=80.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
-|++.+ -.|++++.+|.|+++.+. +|.+. +..+=+..+...|.++...+.||+++....+...-..|..|+..+.
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~g--~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARATG--RPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHS--SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhhc--cceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 567765 899999999999997654 56554 3433344555666666677999999986655554336777777888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+-.. .+.+.++.++...++.|++ ...+|++|-+|+.
T Consensus 117 ~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 117 QSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp HHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 8899987644 5566666666665555543 4689999999764
No 177
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.82 E-value=0.13 Score=64.20 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=123.8
Q ss_pred ccccCCchHHHHHHHHHHHHhcCC-------CCccEEEEchhHHHhHHHHHHHhhhc----CCcEEEEEecCCcccCCCC
Q 004970 460 RNVRFGVREHGMGAICNGIALHSP-------GLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGEDG 528 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~-------~~~Piv~~~~~F~~r~~dqir~~a~~----~~pV~~v~t~~g~~~g~dG 528 (721)
-+|+.|+.|--+..++.|.++.|. |.+.++++=..=++++.|.++...+. +-.|+++...|-...
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~---- 150 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCV---- 150 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCc----
Confidence 688999999999999999994442 02446665556678999998866543 345666653332211
Q ss_pred CCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCC--------CCCCC----C
Q 004970 529 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKL--------PHLAG----T 587 (721)
Q Consensus 529 ~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~------r~~~--------~~~~~----~ 587 (721)
+-|.-.|--++...-+|-|+.|+|++|+..+.+++++ ..+-|+.+|.. ++.+ +..+. +
T Consensus 151 -SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~ 229 (1159)
T PRK13030 151 -SSSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPP 229 (1159)
T ss_pred -cCcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCC
Confidence 1122223334444557779999999999999998874 35679998852 1111 00110 0
Q ss_pred c----c-cc-c-----------------------cCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCC-----
Q 004970 588 S----I-DG-V-----------------------EKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG----- 633 (721)
Q Consensus 588 ~----~-~~-~-----------------------~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~G----- 633 (721)
. . .. . ++.... ... ...++-||++|....-+.+|.+.|...+
T Consensus 230 ~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~-~~~---~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~ 305 (1159)
T PRK13030 230 AGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWV-APS---PDARVGIVTCGKAHLDLMEALRRLGLDDADLRA 305 (1159)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccC---CCCCEEEEEeCccHHHHHHHHHHcCCCcccccc
Confidence 0 0 00 0 001111 011 1367999999999999999988874433
Q ss_pred CceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc
Q 004970 634 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 674 (721)
Q Consensus 634 i~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~ 674 (721)
+.++|+-+-..-||+.+.+. ..++.. ..++||||...
T Consensus 306 lgirilKvgm~~PL~~~~i~---~F~~g~-d~VlVVEE~~p 342 (1159)
T PRK13030 306 AGIRIYKVGLSWPLEPTRLR---EFADGL-EEILVIEEKRP 342 (1159)
T ss_pred cCccEEEeCCccCCCHHHHH---HHHhcC-CEEEEEeCCch
Confidence 23566666676699988653 223333 33599999865
No 178
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.50 E-value=0.046 Score=68.85 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=72.0
Q ss_pred cEEEEEECCCcc-ChhhHHHHHHHHHhcCCCeEEEEEECCCccccc-----ccc------------ccccccHHHHHhhC
Q 004970 205 HYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHISIDG-----DTE------------IAFTENVDKRFEGL 266 (721)
Q Consensus 205 ~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~-----~~~------------~~~~~~~~~~~~a~ 266 (721)
..||++.|||.. . +-+..+..+...+.+..++++||..|+..+ .+. .....|+..++.++
T Consensus 952 ~sv~~~~GDG~~~d--iG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYD--IGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhc--cCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999954 5 444578888888887777777777775443 111 11235788899999
Q ss_pred CCeEEEecc-CCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 267 GWHVIWVKN-GNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 267 G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
|..|+--.- |- ++.++.+++++|.+ .++|++|++.+.
T Consensus 1030 g~~yvA~~~~~~-~~~~~~~~~~~A~~-~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGA-NMQQTLKAFREAEA-YDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEeccc-CHHHHHHHHHHHHc-CCCCEEEEEECC
Confidence 987664323 55 79999999999987 899999999975
No 179
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.49 E-value=0.085 Score=51.20 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhh-hcCCcEEEEEecCCcccCCCCCCC--CChhhhHHHh
Q 004970 465 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA-LCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASFR 541 (721)
Q Consensus 465 GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a-~~~~pV~~v~t~~g~~~g~dG~TH--q~~edia~lr 541 (721)
.-+|...+++|+|..+.|+ +|.+++-.+-...+.+.+..+. ..+.||+++.+.-|- .|++-+.| ++......|.
T Consensus 40 ~~~ee~aa~~aAg~~~~~~--~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~g~~~~~~l~ 116 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGK--KPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPMGRATPKLLD 116 (157)
T ss_pred cCChHHHHHHHHHHHHhcC--CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccchhhhhHHHHH
Confidence 4688999999999998886 7887654444556667777766 789999999754444 33332222 2222222222
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004970 542 AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 579 (721)
Q Consensus 542 ~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~ 579 (721)
.+ ++......+++++ ..++.|++ +.++|++|.+++.
T Consensus 117 ~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 117 TL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred Hc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 22 2234555556666 65555552 2359999998764
No 180
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.30 E-value=0.3 Score=60.97 Aligned_cols=197 Identities=11% Similarity=0.015 Sum_probs=123.4
Q ss_pred ccccCCchHHHHHHHH---------HHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhc----CCcEEEEEecCCcccCC
Q 004970 460 RNVRFGVREHGMGAIC---------NGIALHSPGLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGE 526 (721)
Q Consensus 460 R~~~~GIaE~~~vg~a---------aGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~----~~pV~~v~t~~g~~~g~ 526 (721)
-+|..|+.|--++.++ .|-+..| .+.++++=..=++++.|.++...+. +-.|+++...|-....
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~G--v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~S- 159 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDG--VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKS- 159 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeecc--ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCcc-
Confidence 6789999999999999 5557777 4777777677788999998865443 4456666533322111
Q ss_pred CCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC-----C---CCCCCcc
Q 004970 527 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL-----P---HLAGTSI 589 (721)
Q Consensus 527 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~~-----~---~~~~~~~ 589 (721)
-|.-.|--++...-+|-|+.|+|.+|+..+.+++++ ..+-||.+|..- ..+ + ..+. .
T Consensus 160 ----Sq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~ 233 (1165)
T PRK09193 160 ----STLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--D 233 (1165)
T ss_pred ----ccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--c
Confidence 111122233334456779999999999999998774 356799888521 111 0 0110 0
Q ss_pred ccccCc----cE-----------------------------EEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc-
Q 004970 590 DGVEKG----AY-----------------------------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA- 635 (721)
Q Consensus 590 ~~~~~G----~~-----------------------------~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~- 635 (721)
+..+.| .| ++... ....++-||++|-...-+.+|.+.| |++
T Consensus 234 f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~--~~~~~iGIItsG~~y~~v~eal~~l---g~~~ 308 (1165)
T PRK09193 234 FEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVID--SPNARLGIVAAGKAYLDVRQALRDL---GLDE 308 (1165)
T ss_pred ccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecC--CCCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 001111 01 01101 0136799999999998888876655 554
Q ss_pred -------eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc
Q 004970 636 -------VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 674 (721)
Q Consensus 636 -------~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~ 674 (721)
++|+-+-...||+.+.+. ...+ +..-++||||...
T Consensus 309 ~~~~~~gi~ilKvgm~~PL~~~~i~---~Fa~-g~~~vlVVEE~~p 350 (1165)
T PRK09193 309 ETAARLGIRLYKVGMVWPLEPQGVR---AFAE-GLDEILVVEEKRQ 350 (1165)
T ss_pred hhhcccCCCEEEeCCCCCCCHHHHH---HHHh-cCCEEEEEecCch
Confidence 788888888899988763 2222 2233599999864
No 181
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.26 E-value=0.12 Score=50.42 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=76.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|-|+|.... +|-+ .+..+-+..+..-|.++-..+.||+++....... ..+-.+||.+++
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~ 111 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASG--RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPE-LRGTGANQTIDQ 111 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhC--CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHH-hcCCCCCcccch
Confidence 356655 789999999999998664 5655 3577777777777777778899999997332222 222345788888
Q ss_pred hHHHhcCCCc--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 537 LASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 537 ia~lr~iPnl--~V~~P~d-------~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
..+++.+=.. +|-.|.+ +..+..+++.|.....+|++|-+|
T Consensus 112 ~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 112 VGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7888766543 3334444 344444555555335689999764
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.70 E-value=0.41 Score=46.70 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=79.6
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++.+ -.|++++-+|.|+|.... +|-+ .+..+=+..+...+.++...+.||+++........ .....+|.+++.
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg--~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~-~~~~~~q~~d~~ 115 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTG--KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDE-LGTDYFQEVDLL 115 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccc-cCCCCCcccCHH
Confidence 55544 789999999999998653 4554 35666666666777777788999999963322221 112247878888
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSRQ 579 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~Irl~r~ 579 (721)
.+++.+-. ....+.++.++...++.|++. ..+|++|-+|+.
T Consensus 116 ~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 116 ALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 88887765 445566777777777766642 469999988764
No 183
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.28 E-value=0.27 Score=57.25 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=80.3
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ ..|++++.+|-|+|..-+ +|-+ .++.+-+..++.-|.++...+.||+++....... .+ -..||.+.
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d 111 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITG--KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMD 111 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhC--CceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccc
Confidence 366666 699999999999996443 4433 4677777777777887778899999986322222 23 23489888
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+..+++.+-.. .....++.++...++.|++ ...+|+||-+|+.
T Consensus 112 ~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 112 NVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 88999987653 3444667777666665553 2468999999875
No 184
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=94.07 E-value=0.3 Score=56.77 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=78.2
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|.|+|...+ +|-++ +-.+=+..+..-|..+...+.||+++........-..+..+|.++.
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg--~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATG--NAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhC--CceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 467755 899999999999998554 56554 3344455666777777788999998863333322223443455666
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+-...... .++.++..+++.|++. ..+|+||-+|+.
T Consensus 126 ~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 78888776654443 6677777666666642 358999999864
No 185
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.93 E-value=0.41 Score=46.26 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=59.4
Q ss_pred EEEEEECCCccChhhHHHHHH-HHHhcCCCeEEEEEECCCccc--cccccccccccHHHHHhhC-CCeEEEeccCCCCHH
Q 004970 206 YTYVILGDGCQMEGIANEASS-LAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYD 281 (721)
Q Consensus 206 ~vv~viGDG~~~eG~~~Eal~-~a~~~~L~~li~IvddN~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 281 (721)
.+++.. ..|. ...++.+. .++.+++ |+++++...+++. ++.+. ...+....++.+ |+.++.+ . |..
T Consensus 65 pi~~~~--~~f~-~ra~dqi~~~~a~~~~-pv~~~~~~~g~~~~~~G~tH--~~~~~~a~~~~iPg~~v~~P---s-~~~ 134 (156)
T cd07033 65 PFVSTF--SFFL-QRAYDQIRHDVALQNL-PVKFVGTHAGISVGEDGPTH--QGIEDIALLRAIPNMTVLRP---A-DAN 134 (156)
T ss_pred EEEEEC--HHHH-HHHHHHHHHHHhccCC-CeEEEEECCcEecCCCCccc--chHHHHHHhcCCCCCEEEec---C-CHH
Confidence 344444 3332 47788877 8888887 6777887766654 44442 122334566666 8999988 4 999
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 004970 282 DIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 282 ~l~~al~~a~~~~~~P~lI~~ 302 (721)
++...++++.+ .++|++|..
T Consensus 135 ~~~~ll~~a~~-~~~P~~irl 154 (156)
T cd07033 135 ETAAALEAALE-YDGPVYIRL 154 (156)
T ss_pred HHHHHHHHHHh-CCCCEEEEe
Confidence 99999999988 677998854
No 186
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.70 E-value=2.8 Score=43.48 Aligned_cols=119 Identities=11% Similarity=-0.028 Sum_probs=66.5
Q ss_pred CCCccccCCchHHHHHHHHHHHH----hc-----CCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccC
Q 004970 457 PEERNVRFGVREHGMGAICNGIA----LH-----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 525 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA----~~-----G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g 525 (721)
+|.++++..+.-+..+|.+...| +. .. =+|++.+ -..|++..+..+......++||++++-.++. +|
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p-~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~-yg 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDK-KKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEV-YS 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCC-CCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCcc-cc
Confidence 45566666544445555433333 22 11 2577765 4455544444454455688998888766553 33
Q ss_pred CCCCCCCC------------------hhhh-HHHh--cCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 526 EDGPTHQP------------------IEHL-ASFR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 526 ~dG~THq~------------------~edi-a~lr--~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
.-+..++. .-|. .+.+ .++.+....+.++.|++.+|+.++.+.++|++|-..
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~ 201 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAY 201 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22211110 0122 2223 334444446999999999999999525899998663
No 187
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.52 E-value=0.64 Score=49.00 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=64.7
Q ss_pred EEEEEECCCc--cChhhHHHHHHHHHhcCCCeEEEEEECC--Cccccccccccc---cc-cHHHHHhhCCCeEEEeccCC
Q 004970 206 YTYVILGDGC--QMEGIANEASSLAGHLGLGKLIAFYDDN--HISIDGDTEIAF---TE-NVDKRFEGLGWHVIWVKNGN 277 (721)
Q Consensus 206 ~vv~viGDG~--~~eG~~~Eal~~a~~~~L~~li~IvddN--~~~i~~~~~~~~---~~-~~~~~~~a~G~~~~~v~dG~ 277 (721)
+++.++.||+ +.+|..-+++..+...++..+++++|+. +-+|.......+ .. .+..+|+.|+++|..|+ +
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~--~ 243 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV--R 243 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe--c
Confidence 8999999999 8899998889999999998888888875 455553322111 12 57789999999998875 5
Q ss_pred CCHHHHHHHHHHHHh
Q 004970 278 TGYDDIRAAIKEAKA 292 (721)
Q Consensus 278 ~d~~~l~~al~~a~~ 292 (721)
|+.+|-..+..+.+
T Consensus 244 -~~~~lp~~l~~~lr 257 (266)
T cd01460 244 -DLNQLPSVLSDALR 257 (266)
T ss_pred -ChhHhHHHHHHHHH
Confidence 89998888876643
No 188
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.33 E-value=1.2 Score=55.84 Aligned_cols=197 Identities=15% Similarity=0.022 Sum_probs=118.7
Q ss_pred ccccCCchHHHHHHH---------HHHHHhcCCCCccEEEEchhHHHhHHHHHHHh--hhc--CCcEEEEEecCCcccCC
Q 004970 460 RNVRFGVREHGMGAI---------CNGIALHSPGLIPYCATFFVFTDYMRAAIRIS--ALC--EAGVIYVMTHDSIGLGE 526 (721)
Q Consensus 460 R~~~~GIaE~~~vg~---------aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~--a~~--~~pV~~v~t~~g~~~g~ 526 (721)
=+|+-|+.|--+.+. +.|-+..| .+-++++=..=++++.|.++.. ++. +-.|+++...|-....
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dG--v~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S- 162 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDG--VFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS- 162 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeecc--ceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc-
Confidence 577899999999554 44445566 3667776666778999998854 354 3446666533322111
Q ss_pred CCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC-----C---CCCCCcc
Q 004970 527 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL-----P---HLAGTSI 589 (721)
Q Consensus 527 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~~-----~---~~~~~~~ 589 (721)
-|.-.|--++...-+|-|+.|+|.+|+..+...+++ ..+-|+.+|... ..+ + ..+. .
T Consensus 163 ----Sq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~-~- 236 (1186)
T PRK13029 163 ----SSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD-D- 236 (1186)
T ss_pred ----ccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc-c-
Confidence 111122223333446779999999999999998774 356799888531 111 0 0110 0
Q ss_pred ccccCc--------------------------------cE-EEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc-
Q 004970 590 DGVEKG--------------------------------AY-IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA- 635 (721)
Q Consensus 590 ~~~~~G--------------------------------~~-~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~- 635 (721)
+..+.| .+ ++...+ +..++-||++|....-+.+|.+.| |++
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~--~~~~~GIItsG~~y~~v~eAl~~l---gl~~ 311 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDG--PNPRLGIIAAGKAYLDVRQALRDL---GLDD 311 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccC--CCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 000000 00 111111 136799999999998888876655 554
Q ss_pred -------eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc
Q 004970 636 -------VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 674 (721)
Q Consensus 636 -------~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~ 674 (721)
++|+-+-...||+.+.+. ...+ +...++||||...
T Consensus 312 ~~~~~~gi~ilKvgm~~PL~~~~i~---~Fa~-g~d~vlVVEE~~p 353 (1186)
T PRK13029 312 ATCAALGIRLLKVGCVWPLDPQSVR---EFAQ-GLEEVLVVEEKRA 353 (1186)
T ss_pred hhccccCCCEEEeCCCCCCCHHHHH---HHHh-cCCEEEEEecCch
Confidence 788888888899988763 2222 3334599999854
No 189
>PRK07586 hypothetical protein; Validated
Probab=93.04 E-value=1.1 Score=51.73 Aligned_cols=170 Identities=15% Similarity=0.040 Sum_probs=97.8
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ --|++++.+|.|+|...+ +|-+ .++.+=+..+..-|.++...+.||+++....... ...-..||..+.
T Consensus 40 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~ 115 (514)
T PRK07586 40 MRCVLG-LFEGVATGAADGYARMAG--KPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATY-HRKYDAPLTSDI 115 (514)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHHC--CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchh-ccCCCcccccch
Confidence 367766 889999999999997643 5554 3566666666666777777899999986322221 111123666666
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCCCCC-CCCC--ccc----cccCc-----cEEEe
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQKLPH-LAGT--SID----GVEKG-----AYIIS 600 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~~~~~-~~~~--~~~----~~~~G-----~~~v~ 600 (721)
..+++.+=- ..+...++.++..+++.|++ ...+|+||-+|+.-... .... ... ..+-. ...++
T Consensus 116 ~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L 194 (514)
T PRK07586 116 EALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAAL 194 (514)
T ss_pred hhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHH
Confidence 677776532 34455666666666655553 24799999998753210 0000 000 00000 00112
Q ss_pred cCCCCCCCCEEEEEeChhHHHHHHHHHHHHh-CCCce
Q 004970 601 DNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAV 636 (721)
Q Consensus 601 ~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~~ 636 (721)
... .+-++|++.|..-..+.++..+|.+ -|+-+
T Consensus 195 ~~A---~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV 228 (514)
T PRK07586 195 RSG---EPTVLLLGGRALRERGLAAAARIAAATGARL 228 (514)
T ss_pred Hhc---CCCEEEeCCcccchhHHHHHHHHHHHHCCCE
Confidence 221 4678888888865555555555544 36543
No 190
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=92.64 E-value=1.1 Score=44.86 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhC--CCceEEEecCchhhhHHHH-------HHHhhhhcccCCceEEEEcccc-cc
Q 004970 607 KPDVILIGTGSEL-EIAAKAAEELRKG--GKAVRVVSFVSWELFDEQS-------DAYKESVLPAAVSARVSIEAGS-TF 675 (721)
Q Consensus 607 g~dvtIva~G~~v-~~al~Aa~~L~~~--Gi~~~VI~~~sl~pld~~~-------~~~~~~v~~~~~~~~v~vE~~~-~~ 675 (721)
.+||+|.+.|... .++++|++.|++. +++++|||+..|--|-... .+-..+++...+++ | .-.|. ..
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPV-i-FafHGYp~ 111 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPV-I-FAFHGYPW 111 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-E-E-EEESSEHH
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCE-E-EEcCCCHH
Confidence 6899999999977 7999999999988 9999999998876553321 01123556555564 2 22221 11
Q ss_pred cchhhh-----cCCceEEEeccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004970 676 GWEKIV-----GSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 676 G~~~~v-----~~~~~~ig~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ 719 (721)
-+.+.+ ..+...-|..+-|..-++-+++-..++|-=.++..+.+
T Consensus 112 ~i~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai~ 160 (203)
T PF09363_consen 112 LIHRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAIR 160 (203)
T ss_dssp HHHHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHHH
Confidence 111111 11223345444444455778888888887777766654
No 191
>PRK05858 hypothetical protein; Provisional
Probab=92.53 E-value=0.96 Score=52.78 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~e 535 (721)
.=|++.+ ..|++++.+|-|+|...+ +|-++ ++.+=+..+...|.++...+.||+++........ .+-.++|.++
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg--~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d 117 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTR--VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALR-WGMGSLQEID 117 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcC--CCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CCCCCCcccc
Confidence 3577776 899999999999998753 55553 4556566667777777889999998863333321 1223467788
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+-- ......++.++...++.|++ ...+|++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 118 HVPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 8888887765 44555667777777666663 2468999999864
No 192
>PRK07064 hypothetical protein; Provisional
Probab=92.33 E-value=1 Score=52.44 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=79.8
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCC-CCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~d-G~THq~~ 534 (721)
=|++.+ ..|++++.+|.|+|...+ +|-| .++.+=+..++..|..+...+.||+++....... .+.+ +..||.+
T Consensus 42 i~~i~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 118 (544)
T PRK07064 42 IRFVPA-RGEAGAVNMADAHARVSG--GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAP 118 (544)
T ss_pred ccEEee-ccHHHHHHHHHHHHHhcC--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCccccccc
Confidence 366665 889999999999997643 4444 3566666667777877778899999986322222 2322 2456767
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
++..+++.+-.. .+...++.++..+++.|++ ..++|+||-+|..
T Consensus 119 d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 119 DQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred CHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 888888877653 3444567776666665553 2479999999864
No 193
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.27 E-value=0.91 Score=53.37 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=80.8
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
-|++.+ -.|++++.+|-|+|...+ +|-+ .++.+=+..+...|.++-..+.||+++........-.. ..||.++.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATG--KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-DAFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC-Ccccccch
Confidence 466666 899999999999997553 4444 35667667777778877888999999974333322112 24787888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+--. .+...++.++..+++.|++. ..+|+||-+|+.
T Consensus 119 ~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 8888877664 34455677777766665532 369999999875
No 194
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=91.86 E-value=1.1 Score=52.49 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=80.3
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ ..|++++.+|.|+|...+ +|-+ .++.+=+..+...|..+-..+.||+++........-..+ .+|.++.
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTG--RPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRERE-AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcC--CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-cccccCH
Confidence 466666 889999999999998664 5554 367777777777787777889999998633222221122 3677778
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+=.... ...++.++..+++.|++ ...+|++|-+|+.
T Consensus 123 ~~l~~~~tk~~~-~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 123 RRMFGPMAKWVA-EIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHhhhhhhceee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 888887655433 33567777776666664 2468999999864
No 195
>PRK08322 acetolactate synthase; Reviewed
Probab=91.67 E-value=1.2 Score=52.09 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=80.5
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ ..|++++.+|.|+|.... +|-+ .+..+=+..+...|.++-..+.||+++....... .+. + .||.++
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d 113 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTG--KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVD 113 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCC-C-cccccc
Confidence 466665 899999999999998653 4554 3566666677777777778899999986332222 122 2 377777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
...+++.+-. ..+...++.++..+++.|++. ..+|++|-+|+.
T Consensus 114 ~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 114 VVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 7788887654 455666777777777766642 468999999864
No 196
>PRK08266 hypothetical protein; Provisional
Probab=91.62 E-value=1.2 Score=51.99 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=79.3
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCC-CCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~d-G~THq~~ 534 (721)
=|++.+ ..|++++.+|-|+|...+ +|-+ .++.+=+..++.-|..+-..+.||+++....... .+.+ +.+|+..
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 120 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTG--RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMP 120 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecc
Confidence 467766 899999999999997654 5544 3567766777777887788899999986322222 2322 2345556
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
....+++.+-.. .+...++.++..+++.|++ ...+|++|-+|..
T Consensus 121 d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 121 DQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 777888877553 3444555666666555553 3579999999864
No 197
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.55 E-value=1.3 Score=51.88 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=80.6
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|.|+|..-. +|-+ .++.+=+..+...|..+-..+.||+++....... ......+|.++.
T Consensus 40 i~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~ 115 (558)
T TIGR00118 40 IEHILV-RHEQGAAHAADGYARASG--KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTS-LIGSDAFQEADI 115 (558)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCcc-ccCCCCCcccCh
Confidence 377776 899999999999996543 4444 4577766677777777778899999986322221 112234777777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+=... +...++.++..+++.|++. ..+|+||-+|+.
T Consensus 116 ~~~~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 116 LGITMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhhhcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 78888765543 3345777887777777642 368999999865
No 198
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=91.51 E-value=1.6 Score=42.70 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHH-HHHHhc--------CCCeEEEEEECCCccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHL--------GLGKLIAFYDDNHISI 247 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal-~~a~~~--------~L~~li~IvddN~~~i 247 (721)
.++.|.|+|+. ..++|+.+.=+.|.. -.+|-+ +.++.+ ++ |++++...-++.-
T Consensus 56 ~vg~AaGlA~~----------------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~ 117 (167)
T cd07036 56 IVGLAVGAAMN----------------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIG 117 (167)
T ss_pred HHHHHHHHHHc----------------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCC
Confidence 35667777753 235555444555543 566665 334433 35 7888887666554
Q ss_pred cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 248 DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 248 ~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
++.+. ..++ ..++++. |+.++.+ .|..+....++.+.+ .++|++|.
T Consensus 118 ~G~th--s~~~-~a~lr~iPg~~V~~P----sd~~e~~~~l~~~~~-~~~P~~~~ 164 (167)
T cd07036 118 GGAQH--SQSL-EAWFAHIPGLKVVAP----STPYDAKGLLKAAIR-DDDPVIFL 164 (167)
T ss_pred cChhh--hhhH-HHHHhcCCCCEEEee----CCHHHHHHHHHHHHh-CCCcEEEE
Confidence 45442 2333 5788887 9999999 499999999999987 78899874
No 199
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=91.48 E-value=8 Score=40.08 Aligned_cols=89 Identities=16% Similarity=0.077 Sum_probs=57.4
Q ss_pred ccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCCh-----------------------hhh-HH
Q 004970 486 IPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI-----------------------EHL-AS 539 (721)
Q Consensus 486 ~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~-----------------------edi-a~ 539 (721)
+|++.. -..|++..+..+..++..++||++++-..+. +|.-|..++.. -|+ .+
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~-yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEA-YMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcc-cccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 688765 5666566666677778889998888866554 44212211110 122 22
Q ss_pred HhcC--CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 540 FRAM--PNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 540 lr~i--Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
.+++ +.+..+...++.|+..+++.+++ .++|++|-+
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 3333 23334678999999999999997 589998865
No 200
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=91.46 E-value=8.8 Score=37.71 Aligned_cols=117 Identities=21% Similarity=0.154 Sum_probs=68.6
Q ss_pred CCCCccccCCc-hH-HHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCC-cccC-----
Q 004970 456 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG----- 525 (721)
Q Consensus 456 ~~p~R~~~~GI-aE-~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g-~~~g----- 525 (721)
..|.+++..+. .= ...++.|.|.++... =++++.+ -..|+.-. ..+...+..++|+++++-..+ ++..
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~-~~~vv~i~GDG~f~~~~-~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYP-DRQVIALSGDGGFAMLM-GDLITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhhH-HHHHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 45777776543 22 113445556555431 1455544 56675443 235556677999887776665 3210
Q ss_pred -CCCC-CC--CChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 526 -EDGP-TH--QPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 526 -~dG~-TH--q~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
..++ .+ +...|+. +..+. |+..+...+..|++..++.+++ .++|++|-+
T Consensus 117 ~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 117 VMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0011 11 1122433 34444 7888888999999999999996 589998865
No 201
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.40 E-value=1.3 Score=52.00 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
-|++.+ .-|++++.+|.|+|...+ +|-++ +-.+.+..++.-|.++-..+.||+++........ .+-..+|.++.
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~-~~~~~~Q~~d~ 125 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSG--KVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ-TDRNAFQELDH 125 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc-CCCCCccccCh
Confidence 466766 799999999999997643 55553 5667777777778877788999999863333222 12234777888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+--. .+...+++++...++.|++ ...+|++|-+|..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 126 IALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 8888877653 3345556666665655553 3468999999864
No 202
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.37 E-value=3.3 Score=40.42 Aligned_cols=117 Identities=14% Similarity=-0.010 Sum_probs=67.5
Q ss_pred CCCCccccCCch--HHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCC-cccCCC---
Q 004970 456 TPEERNVRFGVR--EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGED--- 527 (721)
Q Consensus 456 ~~p~R~~~~GIa--E~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g-~~~g~d--- 527 (721)
..|.+++..|.- =...+++|.|.++... -+|+++. -..|... ...+...+..++|+++++...+ ++.-..
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARP-DKRVVLVEGDGAFGFS-GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCC-CCeEEEEEcchhhcCC-HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 357888876431 2234456667666542 2566654 4455432 3445556778999877776654 332110
Q ss_pred ----CCCCC----ChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 528 ----GPTHQ----PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 528 ----G~THq----~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
+..+. ...|.. +.++. |+..+.-.+..|+..+++.+.. .++|++|-+
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 112322 23333 5666677789999999999986 589998854
No 203
>PRK07524 hypothetical protein; Provisional
Probab=91.33 E-value=1.6 Score=50.87 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=81.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCcc-EE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCC-CCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIP-YC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~P-iv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~d-G~THq~~ 534 (721)
-|++.+ -.|++++.+|-|+|...+ +| +| .+..+=+..+..-|.++...+.||+++....... .+.+ +..|+.+
T Consensus 40 i~~i~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~ 116 (535)
T PRK07524 40 IRHVTP-RHEQGAGFMADGYARVSG--KPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELP 116 (535)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccc
Confidence 366666 899999999999997554 55 44 3566666667777777778899999886332222 2322 3556656
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
....+++.+-- ..+...++.++...++.|++ ...+|+||-+|+.
T Consensus 117 d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 117 DQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred cHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 77788887654 45666677787777777664 2468999999864
No 204
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=91.23 E-value=2.5 Score=41.08 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=72.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCC----
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQ---- 532 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq---- 532 (721)
-|++.+ -.|++++.+|.|++...+ ..+|. +..+=+..+...|.++...+.||+++....... .+.....|+
T Consensus 36 i~~i~~-rhE~~A~~mA~gyar~t~--~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 112 (162)
T cd07038 36 LRWVGN-CNELNAGYAADGYARVKG--LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGD 112 (162)
T ss_pred ceEEee-CCHHHHHHHHHHHHHhhC--CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeecccc
Confidence 355554 889999999999998763 44443 455656667777777778899999996332222 232222232
Q ss_pred -Chh-hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC
Q 004970 533 -PIE-HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR 578 (721)
Q Consensus 533 -~~e-dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~Irl~r 578 (721)
.++ +..+++.+=... ....+++++..+++.|++. .++|++|-+||
T Consensus 113 ~~~~d~~~~~~~~tk~~-~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 113 GDFDVFLKMFEEITCAA-ARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred cchHHHHHHHHhheeEE-EEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 233 467777654433 3335666666666665532 35899998875
No 205
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.21 E-value=1.1 Score=52.47 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=80.6
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ ..|++++.+|.|+|+..+ +|-+ .++.+=+..++..|..+...+.||+++........ .+-..+|.++.
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~-~~~~~~q~~d~ 127 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTG--KPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASM-IGTDAFQEVDT 127 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcC--CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCccc-ccCCCccccch
Confidence 477775 899999999999998754 5644 36677667777788887788999999863333221 11234677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
.++++.+--...- -.++.++..+++.|++. ..+|++|-+|+.
T Consensus 128 ~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 128 YGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7788776554333 34677777777766642 369999999864
No 206
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=91.06 E-value=1.5 Score=51.54 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=79.4
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 536 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ed 536 (721)
|++.+ ..|++++.+|.|+|..-+ +|-++ ++.+=+..+...|.++-..+.||+++....... .+. ..+|.++.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 119 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASG--VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADA 119 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhC--CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccch
Confidence 56665 889999999999997643 45553 678877777788888778899999986333222 232 23566777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+--...- ..++.++..+++.|++ ...+|+||-+|+.
T Consensus 120 ~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 120 MGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 7888876554433 3567777766666653 2469999999864
No 207
>PRK08617 acetolactate synthase; Reviewed
Probab=91.00 E-value=1.4 Score=51.55 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=80.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ ..|++++.+|.|+|...+ +|-+ .++.+=+..+..-+.++...+.||+++....... .+. ..||.+.
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d 117 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTG--KPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMD 117 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcC--CCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccc
Confidence 466666 899999999999998753 4544 3566666666677777777899999986322222 232 2478888
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
...+++.+-- ..+.-.++.++..+++.|++ ...+|++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 118 NVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 8888887754 34445667777776666664 2468999999864
No 208
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.82 E-value=2.1 Score=50.46 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=79.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcC-CCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHS-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G-~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~e 535 (721)
-|++.+ --|++++.+|-|+|... + +|-| .++.+=+..+...|.++...+.||+++......... .-..+|.++
T Consensus 42 i~~V~~-rhE~~A~~mAdgyaR~t~g--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~-~~~~~q~~D 117 (588)
T TIGR01504 42 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL-HKEDFQAVD 117 (588)
T ss_pred CcEEee-CCHHHHHHHHHHHHHhcCC--CeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc-CCCcccccC
Confidence 366664 77999999999999753 3 4444 356665566666777777789999999744333221 123377777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+=-. .+...++.++..+++.|++ ...+|+||-+|+.
T Consensus 118 ~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 118 IAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 77888876543 3344577787777777775 3468999999875
No 209
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.81 E-value=1.8 Score=51.18 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=80.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcC-CCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHS-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G-~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ 534 (721)
=|++.+ .-|++++.+|-|+|... + +|-+ .|+.+-+..+..-+.++-..+.||+++....... .+. ..||.+
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~ 117 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAV 117 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 477777 89999999999999764 3 3443 4677777777777777778899999986333322 222 237777
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
+...+++.+=-. .+...++.++..+++.|++. ..+|++|-+|+.
T Consensus 118 d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 118 DIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 788888865443 33446677777777766542 458999999865
No 210
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=90.69 E-value=12 Score=36.83 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=66.3
Q ss_pred CCCCccccCCc--hHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecC-CcccCC----
Q 004970 456 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGE---- 526 (721)
Q Consensus 456 ~~p~R~~~~GI--aE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~-g~~~g~---- 526 (721)
..|.||+..+- +=...++.|.|.++.-. =+|++.+ -..|... ..-+......++|+++++... +++.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~m~-~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYP-DRKVVAVSGDGGFMMN-SQELETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhH-HHHHHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45788886532 11223335556554321 2577655 4555422 223555566789977775444 443210
Q ss_pred --CCC-CCC--ChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 527 --DGP-THQ--PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 527 --dG~-THq--~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
.+. .+. ..-|.+ +-+++ |+.-+.-.+.+|++.+++.++. .++|++|-+.
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 010 111 111333 33443 6777888999999999999996 6899998764
No 211
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.60 E-value=1.8 Score=50.97 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=80.7
Q ss_pred CccccCCchHHHHHHHHHHHHhc-CCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ -.|++++.+|.|+|.. |+ ..+| .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++
T Consensus 43 i~~i~~-rhE~~A~~mAdgYar~tg~--~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 117 (574)
T PRK07979 43 IDHVLV-RHEQAAVHMADGLARATGE--VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY--DAFQECD 117 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCC--ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC--CCCceec
Confidence 366665 7899999999999965 53 4444 3577777777777777777899999997433332 232 2367677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
...+++.+=. -.+...+++++..+++.|++. ..+|+||.+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 118 MVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred HHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 7788886654 334456788888877777742 469999999875
No 212
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.59 E-value=1.5 Score=51.33 Aligned_cols=115 Identities=17% Similarity=0.072 Sum_probs=81.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ ..|++++.+|.|+|..-. +|-+ .++.+=+..+...+.++-..+.||+++....... .+. ..+|.++
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg--~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d 113 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATG--KVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEID 113 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccc
Confidence 466666 899999999999998653 4554 3577767777777887778899999997433332 132 2367777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..++++.+-...... .++.++..+++.|++. .++|++|-+|+.
T Consensus 114 ~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 114 VLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred hhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 778888776544444 4677777777776642 468999999864
No 213
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=90.55 E-value=6.2 Score=38.12 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=64.8
Q ss_pred CCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhc-CCcEEEEEecCCcccCCCC--CC
Q 004970 456 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALC-EAGVIYVMTHDSIGLGEDG--PT 530 (721)
Q Consensus 456 ~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~-~~pV~~v~t~~g~~~g~dG--~T 530 (721)
..|.+|+..|=- ...++.|.|+++.-. +|++.. -..|+.-. ..+...+.. ++|+++++...+. +|.-+ .+
T Consensus 33 ~~~~~~~~~gsm-G~~lp~AiGa~~a~~--~~Vv~i~GDG~f~m~~-~el~t~~~~~~~~i~~vV~nN~~-~g~~~~~~~ 107 (157)
T cd02001 33 DRDGHFYMLGSM-GLAGSIGLGLALGLS--RKVIVVDGDGSLLMNP-GVLLTAGEFTPLNLILVVLDNRA-YGSTGGQPT 107 (157)
T ss_pred cCCCCEEeecch-hhHHHHHHHHHhcCC--CcEEEEECchHHHhcc-cHHHHHHHhcCCCEEEEEEeCcc-ccccCCcCC
Confidence 457888753221 112235677766543 677765 45564332 123333434 5898777644443 22222 23
Q ss_pred CCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 531 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 531 Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
++...|.+-+..-=|+.-+...+..|+..+++.++. .++|++|.+
T Consensus 108 ~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 108 PSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 332233333333335556667899999999999996 589998865
No 214
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.34 E-value=1.8 Score=50.59 Aligned_cols=116 Identities=11% Similarity=0.002 Sum_probs=77.6
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|.|+|...+ +|-++ +..+=+..++..+.++-..+.||+++........ ..-.++|.++.
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tg--kpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~-~~~~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITG--KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM-IGHDYFQEVNL 115 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhC--CCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc-cCCCcccccch
Confidence 455554 889999999999998664 56664 5666666667777777788999999863222211 11234677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~ 579 (721)
..+++.+--. .+...++.++..+++.|++ ...+|++|-+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 8888876553 3445555666666655543 2469999999864
No 215
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=90.29 E-value=5.4 Score=39.15 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=63.5
Q ss_pred CCCccc-cCCchH-HHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-ccCCCCCC-
Q 004970 457 PEERNV-RFGVRE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPT- 530 (721)
Q Consensus 457 ~p~R~~-~~GIaE-~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~g~dG~T- 530 (721)
.|.|++ +.|..- ...++.+.|.++... +|++.+ -..|+.- ...+......++|+++++-..+. +.-.....
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~--~~Vv~i~GDGsf~m~-~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATD--KPTVLLTGDLSFLHD-LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCC--CCEEEEEehHHHHHh-HHHHHhccccCCCeEEEEEECCCCchheeccCC
Confidence 467777 544322 123345555544422 677765 4555433 23344455668997776655543 21000000
Q ss_pred --------C----CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 531 --------H----QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 531 --------H----q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
. +...-.++.+++ |+.-+.-.++.|+..+|+.+++ .++|++|-+
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 011112333333 5566777899999999999996 689998854
No 216
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=90.26 E-value=7.5 Score=41.54 Aligned_cols=149 Identities=11% Similarity=-0.002 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchH---HHHHHHHHHHHhcCCCCccE
Q 004970 412 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVRE---HGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 412 ~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE---~~~vg~aaGlA~~G~~~~Pi 488 (721)
....++.++|.++.-...+.+++ .|.+-+.. .| ++++..--- ...+.+|.|+++... =+||
T Consensus 11 ~i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~~-------------~~-~~l~~~~~~t~mG~alPaAiGaklA~P-d~~V 74 (287)
T TIGR02177 11 GILSALQRALAELNLDPEQVVVV-SGIGCSAK-------------TP-HYVNVNGFHGLHGRALPVATGIKLANP-HLKV 74 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE-ECCCcccc-------------cC-CeEecCCcccccccHHHHHHHHHHHCC-CCcE
Confidence 34456666666664333344443 46553321 22 333332110 224456677655542 2677
Q ss_pred EEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--------------C-------ChhhhHHHhcCCC
Q 004970 489 CAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------Q-------PIEHLASFRAMPN 545 (721)
Q Consensus 489 v~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--------------q-------~~edia~lr~iPn 545 (721)
+.+ -.+|......-+-.++..++||++++-..+. +|.-|... + ....+++.....-
T Consensus 75 Vai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~-yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~ 153 (287)
T TIGR02177 75 IVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQV-YGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTF 153 (287)
T ss_pred EEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHH-HHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCe
Confidence 764 4555444344455566779998888755543 32222100 0 0111222223222
Q ss_pred cEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 004970 546 ILMLRPADGNETAGAYKVAVANRKRPSILALSR 578 (721)
Q Consensus 546 l~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r 578 (721)
.-.....+..|+..+++.|++ +++|++|-.-.
T Consensus 154 va~~~~~~~~eL~~ai~~Al~-~~GpslIeV~~ 185 (287)
T TIGR02177 154 VARGFSGDVAHLKEIIKEAIN-HKGYALVDILQ 185 (287)
T ss_pred EEEEecCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 223335899999999999996 69999887643
No 217
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.17 E-value=2.1 Score=50.58 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=77.6
Q ss_pred CccccCCchHHHHHHHHHHHHhc-CCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ -.|++++.+|.|+|.. |+ ..+| .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d 118 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGR--MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAE 118 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCC--CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCC--CCCcccc
Confidence 466666 8999999999999976 53 3343 3566666666666777667899999997322221 222 2477778
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~ 579 (721)
+..+++.+-. -.+...+++++...++.|++ ...+|+||-+|+.
T Consensus 119 ~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 119 QMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred hhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 8888887644 34455667676666665553 2468999999865
No 218
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.08 E-value=1.7 Score=51.08 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 534 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ 534 (721)
+-+++.+ .-|++++.+|.|+|...+ +|-+ .++.+=+..++..|.++-..+.||+++....... .+. ..+|.+
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~ 127 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISG--KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEA 127 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC--CCcccc
Confidence 4578866 899999999999997643 4544 3566666666677777777899999986322222 222 235667
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+..++++.+-.... ...++.++..+++.|++ ...+|+||-+|..
T Consensus 128 d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 77888887655433 34556666666666554 2369999999864
No 219
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.03 E-value=2.1 Score=50.48 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=79.4
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++.+ -.|++++.+|.|+|...+ +|-+ .++.+=+..+...|.++-..+.||+++....... ......+|.+++.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~~d~~ 115 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASG--KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTK-LIGNDAFQEIDAL 115 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcc-ccCCCCCccccHh
Confidence 66666 799999999999997643 4544 3566666677777888888899999986332222 1122347777788
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
++++.+=.... .-.++.++...++.|++. ..+|+||-+|+.
T Consensus 116 ~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 116 GIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred hHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 88887655433 335566777777766643 468999999864
No 220
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.68 E-value=7.8 Score=41.27 Aligned_cols=106 Identities=12% Similarity=0.018 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCC--------------
Q 004970 469 HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-------------- 532 (721)
Q Consensus 469 ~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq-------------- 532 (721)
...+.+|.|+++... =++|+.. -.++++.....+-.++..+.|+++++-..+. +|.-|...+
T Consensus 62 G~alp~A~GaklA~P-d~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~-ygmtggQ~s~~t~~g~~t~~t~~ 139 (279)
T PRK11866 62 GRVLPIATGVKWANP-KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQV-YGLTTGQASPTTPRGVKTKTTPD 139 (279)
T ss_pred ccHHHHHHHHHHHCC-CCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChh-hhhhcccccCCCCCCceeeccCC
Confidence 344556777766532 2667765 4444555566666678889998888765544 333331110
Q ss_pred -------ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 533 -------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 533 -------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
....++.--..+.+....+.++.|+..+++.|++ +++|++|-.-
T Consensus 140 g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~-~~Gps~I~v~ 190 (279)
T PRK11866 140 GNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK-HKGFSFIDVL 190 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 1112222234444556667999999999999997 6999999763
No 221
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.58 E-value=2.5 Score=50.15 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=80.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=+++.+ -.|++++.+|.|+|..-. +|-+ .+..+=+..+..-|.++-..+.||+++........ ..-..+|.++.
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~-~~~~~~q~~d~ 145 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATG--RVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGL-IGTDAFQEADI 145 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc-cCCCcCcccch
Confidence 466666 899999999999997532 4444 35666666677777777788999999974333321 11223677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+-.. .+...++.++..+++.|++. ..+|++|-+|+.
T Consensus 146 ~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 146 VGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 7888876543 33456777777777776642 468999999865
No 222
>PRK08611 pyruvate oxidase; Provisional
Probab=89.41 E-value=2.5 Score=49.78 Aligned_cols=116 Identities=8% Similarity=-0.052 Sum_probs=78.3
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ ..|++++.+|.|+|...+ +|-+ .++.+=+..+...|..+...+.||+++........-.. ..+|.++.
T Consensus 44 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~-~~~q~~d~ 119 (576)
T PRK08611 44 IKFIQV-RHEEVAALAAAAYAKLTG--KIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGT-DFFQEVNL 119 (576)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhC--CceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccCC-CCccccCH
Confidence 366664 889999999999996543 4544 35667666777777777788999999974333321112 23677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~ 579 (721)
..+++.+--. .+...++.++..+++.|++ ...+|++|-+|..
T Consensus 120 ~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 8888877543 3345566666666655442 2469999999875
No 223
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.21 E-value=2.5 Score=50.02 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=78.6
Q ss_pred CccccCCchHHHHHHHHHHHHh-cCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIAL-HSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~-~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ --|++++.+|-|+|. .|+ ..+| .++.+=+..+..-|.++-..+.||+++....... .+. .++|.++
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 124 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGK--PGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECD 124 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCC--CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccc
Confidence 477777 899999999999995 453 3343 3566666667777777777899999986322222 232 3477777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..++++.+=- -.+...++.++..+++.|++. ..+|+||-+|+.
T Consensus 125 ~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 125 TVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred hhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 7777776533 233456777777777766642 369999999875
No 224
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=88.99 E-value=2.8 Score=49.28 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=78.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|.|+|...+ -..+| .++.+=+..+..-|..+-..+.||+++....... .+. ..+|.++.
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg-~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 124 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTG-KLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK--DAFQEADI 124 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhC-CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCCC--CCccccCh
Confidence 477777 899999999999997642 13333 3566666666677777777899999997432222 232 24666777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
.++++.+=.... ...++.++..+++.|++. .++|+||-+|+.
T Consensus 125 ~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 125 VGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 777776655433 345667777776666643 369999999874
No 225
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.90 E-value=3 Score=48.93 Aligned_cols=115 Identities=12% Similarity=0.010 Sum_probs=81.2
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ -.|++++.+|.|+|.... +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 116 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASG--KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT--DAFQEID 116 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccc
Confidence 366666 899999999999996543 3433 3566666667777777778899999986332222 122 2477777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
+.++++.+=. ..+...++.++..+++.|++. ..+|+||-+|..
T Consensus 117 ~~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 117 AVGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7788887654 344567888888888887753 458999999864
No 226
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=88.77 E-value=3.8 Score=38.75 Aligned_cols=85 Identities=18% Similarity=0.089 Sum_probs=50.3
Q ss_pred CCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHH
Q 004970 212 GDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 291 (721)
Q Consensus 212 GDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~ 291 (721)
|-|.. ...+++..|...++ |+++|..+.+..... .......+....++...+-...+.+-....+.+.++++.+.
T Consensus 68 gpg~~---~~~~~l~~a~~~~~-Pvl~i~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 142 (154)
T cd06586 68 GTGLL---NAINGLADAAAEHL-PVVFLIGARGISAQA-KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAY 142 (154)
T ss_pred CCcHH---HHHHHHHHHHhcCC-CEEEEeCCCChhhhc-cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHh
Confidence 77765 56788888888887 688887666543211 11122335566778776555555111102345566666665
Q ss_pred hcCCCCEEEEE
Q 004970 292 AVTDKPTLIRV 302 (721)
Q Consensus 292 ~~~~~P~lI~~ 302 (721)
. ..+|++|.+
T Consensus 143 ~-~~gPv~l~i 152 (154)
T cd06586 143 A-SQGPVVVRL 152 (154)
T ss_pred c-CCCCEEEEc
Confidence 5 478998865
No 227
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.74 E-value=3.2 Score=48.78 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=79.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|-|+|...+ +|-+ .+..+=+..++..|..+-..+.||+++........ ..-.++|.++.
T Consensus 43 i~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~-~~~~~~q~~d~ 118 (574)
T PRK06882 43 IEHVLV-RHEQAAVHMADGYARSTG--KVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNL-IGTDAFQECDM 118 (574)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHhhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc-cCCCcccccch
Confidence 367766 899999999999997643 4544 35666666677777777788999999863322221 11234777777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+=. -.....++.++..+++.|++ ...+|+||-+|..
T Consensus 119 ~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 119 LGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 788876544 34455677777766666664 2469999999875
No 228
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.68 E-value=2.9 Score=49.35 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=76.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
-|++.+ --|++++.+|-|+|...+ +|-+ .++.+=+..+..-|.++...+.||+++....... .+. .++|.++
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 134 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATG--KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQ--DAFQECD 134 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCccccc
Confidence 467776 899999999999997653 4443 3567666677777887778899999997433332 232 2367677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~Irl~r~ 579 (721)
...+++.+=.. .+...++.++..+++.|+ ....+|+||-+|+.
T Consensus 135 ~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 135 TVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 77778766543 233445555555554444 33468999999875
No 229
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.62 E-value=11 Score=40.63 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=62.5
Q ss_pred ccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--------------------CChhhhHHHhcC
Q 004970 486 IPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------------QPIEHLASFRAM 543 (721)
Q Consensus 486 ~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--------------------q~~edia~lr~i 543 (721)
+.++.. -.+|.+-.++.+-.++..+.||++++-...+.....|..| -.+..++.-..+
T Consensus 93 ~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~ 172 (300)
T PRK11864 93 VIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKV 172 (300)
T ss_pred cEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCC
Confidence 455533 4566665566677778999999999866554322222211 112334444566
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 004970 544 PNILMLRPADGNETAGAYKVAVANRKRPSILALSR 578 (721)
Q Consensus 544 Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r 578 (721)
|-+....|.++.++...++.|++ .++|.+|..-.
T Consensus 173 ~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~s 206 (300)
T PRK11864 173 PYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLA 206 (300)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 77788899999999999999996 69999997644
No 230
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=88.61 E-value=1.4 Score=51.70 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=80.5
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccE-E-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPY-C-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi-v-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ .-|++++.+|-|+|...+ +|- | .|+.+=+..++..|..+...+.||+++........ .+-..||.+..
T Consensus 48 i~~v~~-~hE~~A~~aAdgyar~tg--~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~-~~~~~~q~~d~ 123 (568)
T PRK07449 48 LRLHTH-FDERSAGFLALGLAKASK--RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPEL-RDCGANQAIDQ 123 (568)
T ss_pred cEEEee-cCcccHHHHHHHHHHhhC--CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHH-hcCCCCceecH
Confidence 366666 789999999999997654 553 3 57788777777888888888999999963322221 12233688888
Q ss_pred hHHHhcCCCcEEEeeCCHH-----HHHHHHHH---HHHcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGN-----ETAGAYKV---AVANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~-----e~~~~l~~---a~~~~~~P~~Irl~r~ 579 (721)
.++++.+-...+-.|.... .+..+++. +.....+|++|-+|..
T Consensus 124 ~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 124 LGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 9999987755666665521 13345555 3323579999999865
No 231
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=88.59 E-value=3.1 Score=48.71 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=77.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE-E-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCccc-CCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC-A-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~-g~dG~THq~~e 535 (721)
-|++.+ -.|++++.+|-|+|...+ +|-+ . +..+=+..+..-|.++-..+.||+++........ +..-..||.++
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d 117 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMD 117 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhh
Confidence 367766 889999999999997643 4443 3 4566666677777777788999998863332221 11223477777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~Irl~r~ 579 (721)
..++++.+=.. .+...++.++..+++.|+ ...++|+||-+|+.
T Consensus 118 ~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 118 QLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 88888876553 445556676666555554 33568999999864
No 232
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.52 E-value=3 Score=48.98 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=74.7
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 536 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ed 536 (721)
|++.+ -.|++++-+|-|+|...+ +|-++ +..+=...+...|..+-..+.||+++....... .+. ..||.+.+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTG--ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhC--CcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 56555 689999999999998754 56554 344545566667777777899999986332222 232 24788888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~Irl~r~ 579 (721)
..+++.+--.. ....++.++.. +++.|+. ..+|++|-+|+.
T Consensus 118 ~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHYC-ELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGD 162 (574)
T ss_pred hhhcccceeee-EEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 88888664332 23455555444 5555553 569999999864
No 233
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=88.48 E-value=6.1 Score=38.27 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=63.1
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHH-hcCCCeEEEEEECCCc-ccc
Q 004970 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG-HLGLGKLIAFYDDNHI-SID 248 (721)
Q Consensus 171 ~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~-~~~L~~li~IvddN~~-~i~ 248 (721)
.-.=+++.+.|.|..++. ...++|+.+=| + |...-++..|. ..+. |+++|.-+-+. .-.
T Consensus 40 ~~~ee~aa~~aAg~~~~~---------------~~~~v~~~~sG-~--gn~~~~l~~a~~~~~~-Pvl~i~g~rg~~~~~ 100 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAG---------------KKPAILMQSSG-L--GNSINALASLNKTYGI-PLPILASWRGVYKEK 100 (157)
T ss_pred cCChHHHHHHHHHHHHhc---------------CCcEEEEeCCc-H--HHHHHHHHHHHHcCCC-CEEEEEeccCCCCCC
Confidence 444566777777777442 34578888888 3 46777888888 8888 56666633322 111
Q ss_pred ccccccccccHHHHHhhCCCeEEEeccCCCCHHHH---HHHHHHHHhcCCCCEEEEEE
Q 004970 249 GDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDI---RAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l---~~al~~a~~~~~~P~lI~~~ 303 (721)
.+.+.....-....+...++.+..+ . +++++ .+|++.+.+ .++|+.|.+.
T Consensus 101 ~~~q~~~g~~~~~~l~~~~i~~~~i---~-~~e~~~~i~~A~~~a~~-~~gPv~il~~ 153 (157)
T TIGR03845 101 IPAQIPMGRATPKLLDTLGIPYTIP---R-EPEEAKLIEKAISDAYE-NSRPVAALLD 153 (157)
T ss_pred CccccchhhhhHHHHHHcCCCeEEe---C-CHHHHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 1111111111233556677777777 2 55555 444444444 5699988764
No 234
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=88.42 E-value=3.2 Score=48.71 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=79.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
-|++.+ -.|++++.+|.|+|.... +|-+ .+..+-+..+..-|..+...+.||+++....... .+..-.++|.++
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d 124 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccc
Confidence 467766 889999999999998643 3433 3577777777788888888999999986332221 111123467777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
...+++.+=.. .+...++.++...++.|++ ..++|+||-+|+.
T Consensus 125 ~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 125 QLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 77888876543 3444567777766655553 3578999999864
No 235
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.26 E-value=3.8 Score=48.23 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=77.8
Q ss_pred CccccCCchHHHHHHHHHHHHhc-CCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|.|+|.. |+ ..+| .++.+=+..+...|.++-..+.||+++....+.. ......||.+..
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~-~~~~~~~Q~~d~ 115 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGR--MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTK-TIGLGGFQEADQ 115 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccc-cCCCCCCcccch
Confidence 466666 7899999999999965 53 3333 3566666667777777778899999996332222 111234787777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQK 580 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~~ 580 (721)
..+++.+-. -.+...++.++...++.|++ ...+|+||-+|+.-
T Consensus 116 ~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 116 LPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 788887654 23344566666666655543 23589999998753
No 236
>PLN02470 acetolactate synthase
Probab=88.01 E-value=3.5 Score=48.63 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=79.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ --|++++.+|.|+|..-+ +|-+ .++.+=+..++.-|.++-..+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 126 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASG--KVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT--DAFQETP 126 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC--CcCcccc
Confidence 467777 889999999999997543 3444 4677767777777777778899999996332222 122 2367677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
...+++.+=.. -+...++.++..+++.|++. .++|+||-+|..
T Consensus 127 ~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 127 IVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 77777765433 23345778888888777653 469999999875
No 237
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.96 E-value=3.9 Score=48.53 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=78.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=||+.+ --|+.++.+|.|.|.... +|-| .+..+=+..++.-|.++...+.||+++....... .+. ..+|.++
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tg--k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d 135 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATG--KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGT--DAFQETD 135 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--CCccccc
Confidence 477777 899999999999997543 4444 3567766677777888788899999987433322 122 2356666
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
...+++.+-.. .....+++++..+++.|++ ...+|++|.+|+.
T Consensus 136 ~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 136 IFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66777755422 2346677777777766664 3459999999863
No 238
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.66 E-value=4 Score=47.96 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=79.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ed 536 (721)
-|++.+ -.|++++.+|-|+|...+ -..+| .++.+=+..+...|.++-..+.||+++....... .+. ..+|.++.
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg-~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASG-KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhC-CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 467766 789999999999997543 13333 3566666666667777677899999986333322 222 23676777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+=.. .+...+++++..+++.|++. .++|+||-+|+.
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 7778766543 33456788888887777642 469999999865
No 239
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=87.35 E-value=1.2 Score=41.75 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHh-hhcCCcEEEEEecCCcccCCCCCCCCC--hhhhHHHhcC
Q 004970 467 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAM 543 (721)
Q Consensus 467 aE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~-a~~~~pV~~v~t~~g~~~g~dG~THq~--~edia~lr~i 543 (721)
+|...+|+|+|..+.|+ +|-..+-.+=+..+.+.+-.. ..-+.|..++++|-|. ++++=+.+-+ -.-..+++ .
T Consensus 50 REEeg~GIcAGa~lAGk--k~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQVpmGr~~~kiLe-~ 125 (172)
T COG4032 50 REEEGVGICAGAYLAGK--KPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQVPMGRALPKILE-G 125 (172)
T ss_pred chhcceeeehhhhhcCC--CcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhcCCccccccchhhHHHHh-h
Confidence 57778899999999997 998887666555555554432 4568999999887776 5544333321 11112222 2
Q ss_pred CCcEEEeeCCHHHHHHHHHH----HHHcCCCcEEEEEc
Q 004970 544 PNILMLRPADGNETAGAYKV----AVANRKRPSILALS 577 (721)
Q Consensus 544 Pnl~V~~P~d~~e~~~~l~~----a~~~~~~P~~Irl~ 577 (721)
-++..+.|-.++|+..++.. +++ ...|+.+.++
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~~-~s~pv~vlls 162 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAFE-NSRPVAVLLS 162 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHH-cCCceEEEec
Confidence 35567888888887666554 444 4689888774
No 240
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.19 E-value=3.9 Score=47.98 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=77.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=+++.+ ..|++++.+|-|+|...+ +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. + .+|.++
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 120 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATG--KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGN-D-AFQEAD 120 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Cccccc
Confidence 467777 899999999999997543 4554 3566666667777887778899999986333222 122 2 355566
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+=.. .+.-.++.++..+++.|++ ..++|+||-+|+.
T Consensus 121 ~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 121 ITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 66777765432 2234566777777766664 2469999999864
No 241
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.15 E-value=4.8 Score=47.37 Aligned_cols=115 Identities=8% Similarity=-0.054 Sum_probs=77.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ -.|++++.+|-|+|...+ +|-+ .++.+=+..+...|.++-..+.||+++...... ...+-.++|.++.
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~-~~~~~~~~q~id~ 114 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTG--KIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPT-TGMNMDTFQEMNE 114 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcc-ccCCCCCcceech
Confidence 456666 789999999999997543 4544 356666666777777777789999999733332 2223455777877
Q ss_pred hHHHhcCCCcEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~Irl~r~ 579 (721)
.++++.+=-. .....++.++. .+++.|+. ..+|+||-+|+.
T Consensus 115 ~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 115 NPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred hhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 7888865432 23444444444 45555564 679999999875
No 242
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.11 E-value=2.5 Score=47.79 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=77.3
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 536 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~ed 536 (721)
|++.+ ..|++++-+|-|+|...+ +|-+ .|+.+=...++..|..+-..+.||+++....... .+. | .+|.+++
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASG--RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQ 114 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccC--CCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCC-C-CCcccch
Confidence 56655 889999999999998743 4544 4566666667777777778899999986332222 222 2 3677788
Q ss_pred hHHHhcCCCcEE--EeeCC-------HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILM--LRPAD-------GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V--~~P~d-------~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
..+++.+-.... -.|.+ +..+..+++.|.....+|++|-+|..
T Consensus 115 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 115 PGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred hhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 888887665433 33443 23456666666644569999999864
No 243
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=87.04 E-value=25 Score=34.21 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=77.7
Q ss_pred CCeEEEcCCcchHHHHHHHHHhCCCCccc-CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECC--CccC
Q 004970 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQV-TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD--GCQM 217 (721)
Q Consensus 141 ~D~~V~s~Gh~~~~~y~~l~l~G~~gie~-~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGD--G~~~ 217 (721)
=+.++--.|+....++..+.... ++++ .+-+=+.+..+|.|.+.+. ++..+|++-= |.+
T Consensus 16 v~~vfgvpG~~~~~l~~al~~~~--~i~~i~~~~E~~A~~~A~g~ar~~---------------g~~~v~~~~~GpG~~- 77 (172)
T PF02776_consen 16 VTHVFGVPGSGNLPLLDALEKSP--GIRFIPVRHEQGAAFMADGYARAT---------------GRPGVVIVTSGPGAT- 77 (172)
T ss_dssp -SEEEEE--GGGHHHHHHHHHTT--TSEEEE-SSHHHHHHHHHHHHHHH---------------SSEEEEEEETTHHHH-
T ss_pred CeEEEEEeChhHhHHHHHhhhhc--ceeeecccCcchhHHHHHHHHHhh---------------ccceEEEeecccchH-
Confidence 35566677777777777666653 3443 2333344455666666543 3445555533 333
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCC-HHHHHHHHHHHHhcCCC
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG-YDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d-~~~l~~al~~a~~~~~~ 296 (721)
-..-++..|...+. |+++|.-+-.....+........|...+++.+.-....+.+-. + ...+.+|++.+.....+
T Consensus 78 --n~~~~l~~A~~~~~-Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~-~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 78 --NALTGLANAYADRI-PVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPD-DLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp --TTHHHHHHHHHTT--EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGG-GHHHHHHHHHHHHHHCSTS
T ss_pred --HHHHHHhhccccee-eEEEEecccchhhhcccccccchhhcchhccccchhcccCCHH-HHHHHHHHHHHHhccCCCc
Confidence 34557777888887 5666665544333321111113467788998875566673333 3 34566677766333678
Q ss_pred CEEEEEE
Q 004970 297 PTLIRVT 303 (721)
Q Consensus 297 P~lI~~~ 303 (721)
|+.|++-
T Consensus 154 Pv~l~ip 160 (172)
T PF02776_consen 154 PVYLEIP 160 (172)
T ss_dssp EEEEEEE
T ss_pred cEEEEcC
Confidence 9998875
No 244
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.81 E-value=4.4 Score=47.67 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=77.9
Q ss_pred CccccCCchHHHHHHHHHHHHhc-CCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ -.|++++.+|.|+|.. |+ ..+|. ++.+=+..+..-|..+-..+.||+++....... .+. ..+|.++
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 117 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGK--VGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN--DAFQECD 117 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCC--CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccc
Confidence 467776 8999999999999975 53 33333 566656666666777677899999986433332 222 2467777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+=.. .....++.++...++.|++ ...+|+||-+|..
T Consensus 118 ~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 118 MIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 77888766443 3344567777777777664 2468999999864
No 245
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=86.64 E-value=4.2 Score=47.79 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=77.8
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCccc-CCCC------CC
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDG------PT 530 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~-g~dG------~T 530 (721)
|++.+ --|++++.+|-|+|...+ +|-+ .++.+=+..+..-|..+-..+.||+++........ +.++ ..
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTG--KPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHW 128 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhC--CCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCccc
Confidence 77776 779999999999998754 4433 46777777777777777788999999874322221 1110 12
Q ss_pred CCC-hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 531 HQP-IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 531 Hq~-~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+|. ++...+++.+-. ..+...++.++..+++.|++ ..++|++|-+|..
T Consensus 129 ~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 129 TQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred chhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 344 566778876543 34456677777777776664 2478999999853
No 246
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=86.50 E-value=4.3 Score=47.80 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=76.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ --|++++.+|-|+|...+ +|-++ +..+=+..+..-|.++-..+.||+++....... .+ .| .+|.+.
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tg--k~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~-~~-~~Qe~d 116 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTG--KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIG-SG-FFQETH 116 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhC--CceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccC-CC-CccccC
Confidence 456666 789999999999998743 55543 345555566666777777899999996322222 12 22 367677
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~ 579 (721)
+..+++.+-- ..+...++.++..+++.|++ ...+|++|-+|..
T Consensus 117 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 117 PDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 7777775533 34556666776665555443 2579999999864
No 247
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=86.32 E-value=24 Score=37.74 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCC----C----------CCCC-
Q 004970 471 MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----P----------THQP- 533 (721)
Q Consensus 471 ~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG----~----------THq~- 533 (721)
.+++|.|+++... =++++.+ -.++++.....+..++..++|+++++-..+. +|.-+ + +.++
T Consensus 74 alpaAiGaklA~P-d~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~-yGmt~~q~s~tt~~g~~~~~~~~g~ 151 (286)
T PRK11867 74 ALAIATGLKLANP-DLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQI-YGLTKGQYSPTSPVGFVTKTTPYGS 151 (286)
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHH-HhhhcCccCCCCCCCcccccccCCC
Confidence 3445666655432 2566654 4433344344455567779998877755543 22111 1 0011
Q ss_pred ----hhhhHHHhcCCC--cEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 534 ----IEHLASFRAMPN--ILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 534 ----~edia~lr~iPn--l~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
..-.++..+... +......+..|+..+|+.|++ +++|++|-+-
T Consensus 152 ~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~-~~Gp~lIev~ 200 (286)
T PRK11867 152 IEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN-HKGFSFVEIL 200 (286)
T ss_pred CCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 112233334332 223357899999999999996 6899998763
No 248
>PRK12474 hypothetical protein; Provisional
Probab=86.12 E-value=5.8 Score=46.02 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=77.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ --|++++.+|-|+|...+ +|-+ .++.+=+..+..-+.++-..+.||+++....... .+. ..||...
T Consensus 44 i~~i~~-rhE~~A~~mAdgYaR~tg--~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d 118 (518)
T PRK12474 44 MRPVLC-LFEGVVTGAADGYGRIAG--KPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSD 118 (518)
T ss_pred ceEEEe-cchHHHHHHHHHHHHHhC--CCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccC
Confidence 377776 889999999999997532 4544 3566665566666666667899999886322221 121 2355566
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+-. ..+...++.++..+++.|++ ...+|++|-+|+.
T Consensus 119 ~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 119 IDGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred HHHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 6778886543 34456788888887777773 2458999999875
No 249
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.01 E-value=9.3 Score=41.06 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhc----CCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCC----------
Q 004970 469 HGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ---------- 532 (721)
Q Consensus 469 ~~~vg~aaGlA~~----G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq---------- 532 (721)
.+.+++|.|++.. +. -++|+.. -..|.+-.+..+-.++..+.++++++-..+. ++.-|..-.
T Consensus 72 g~~~a~a~Gi~~a~~~~~~-~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp~Ga~t~ 149 (299)
T PRK11865 72 ENAAAVASGIERAVKALGK-KVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTPFGASTT 149 (299)
T ss_pred cchHHHHHHHHHHHHHhcC-CCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCCCCcccc
Confidence 3456666676543 32 1345543 5677777777777778889999988865554 332222111
Q ss_pred ----------------ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 533 ----------------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 533 ----------------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
.+..++.-...|-+....|.++.|+...++.|++ .++|.+|..-
T Consensus 150 tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~ 209 (299)
T PRK11865 150 TSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVL 209 (299)
T ss_pred cCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 1233343356677788899999999999999996 6999999763
No 250
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=85.95 E-value=15 Score=36.06 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCC-----------CCChhhh-HH
Q 004970 474 ICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT-----------HQPIEHL-AS 539 (721)
Q Consensus 474 ~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~T-----------Hq~~edi-a~ 539 (721)
.|.|+++... =++++.+ -..|+.-.+..+..+...++|+++++..++. +|.-+.. .+...|. .+
T Consensus 59 ~AiGa~la~p-~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~-~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 136 (178)
T cd02008 59 VAIGMAKASE-DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT-TAMTGGQPHPGTGKTLTEPTTVIDIEAL 136 (178)
T ss_pred HHhhHHhhCC-CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcc-eeccCCCCCCCCcccccCCCCccCHHHH
Confidence 4555554432 2566654 4556433244466666779998777766553 3322211 1111122 22
Q ss_pred Hhc--CCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 540 FRA--MPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 540 lr~--iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
.++ ++...|-.|.+-.++...++.+++ .++|++|..
T Consensus 137 a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 232 333444455555555588899986 589998865
No 251
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=85.93 E-value=2.8 Score=49.39 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=75.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ ..|++++.+|.|+|.... +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 126 (585)
T CHL00099 52 IKHILV-RHEQGAAHAADGYARSTG--KVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT--DAFQEVD 126 (585)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHhcC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCccccc
Confidence 366765 799999999999997542 4544 3566666667777777778899999986332221 222 2356666
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..++++.+=. -.....+++++..+++.|++ ...+|+||-+|..
T Consensus 127 ~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 127 IFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 6666665432 23345567777777776653 2468999999864
No 252
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=85.77 E-value=11 Score=37.16 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh---hhHHHHHH-HHHhcCCCeEEEEEEC-CCccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME---GIANEASS-LAGHLGLGKLIAFYDD-NHISIDGDT 251 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e---G~~~Eal~-~a~~~~L~~li~Ivdd-N~~~i~~~~ 251 (721)
.++.|.|+|++.++ -..++...+ .|.. -..++.+. .....+++ +.+++.. .+++.++.+
T Consensus 60 ~vg~a~GlA~~G~~-------------~~~~~~~f~--~F~~~~q~r~~~~~~~~~~~~~~~-v~v~~~~g~~~~~~G~t 123 (178)
T PF02779_consen 60 MVGMAAGLALAGGL-------------RPPVESTFA--DFLTPAQIRAFDQIRNDMAYGQLP-VPVGTRAGLGYGGDGGT 123 (178)
T ss_dssp HHHHHHHHHHHSSS-------------EEEEEEEEG--GGGGGGHHHHHHHHHHHHHHHTS--EEEEEEESGGGSTTGTT
T ss_pred ccceeeeeeecccc-------------cceeEeecc--ccccccchhhhhhhhhhhhcccce-ecceeecCccccccccc
Confidence 36778888875410 122334444 4443 35667766 67777775 4444433 334555544
Q ss_pred cccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhc-CCCCEEEEEE
Q 004970 252 EIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVT 303 (721)
Q Consensus 252 ~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~lI~~~ 303 (721)
. ...+....++++ ||.++.+ . |..++...++.+.+. .++|++|...
T Consensus 124 H--~s~~d~~~~~~iPg~~v~~P---s-d~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 124 H--HSIEDEAILRSIPGMKVVVP---S-DPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp T--SSSSHHHHHHTSTTEEEEE----S-SHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred c--cccccccccccccccccccC---C-CHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3 233456677777 9999999 4 999999999999873 4689987543
No 253
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=85.74 E-value=6.1 Score=43.61 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEE-CCCccChhhHHHHH-HHHHhcC--------CCeEEEEEECCCcc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVIL-GDGCQMEGIANEAS-SLAGHLG--------LGKLIAFYDDNHIS 246 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~vi-GDG~~~eG~~~Eal-~~a~~~~--------L~~li~IvddN~~~ 246 (721)
.++.|.|+|++. .+.++++. .|-. + -.+|-+ +.++.++ + |++++..+....
T Consensus 86 ~vg~AaGlA~~G---------------~~P~v~~~~~~f~-~--ra~dQi~~dva~~~~~~~g~~~~-pV~i~~~~G~~~ 146 (356)
T PLN02683 86 FTGIGVGAAYAG---------------LKPVVEFMTFNFS-M--QAIDHIINSAAKTNYMSAGQISV-PIVFRGPNGAAA 146 (356)
T ss_pred HHHHHHHHHHCC---------------CEEEEEEehhhHH-H--HHHHHHHHHHHHhccccCCCccC-CEEEEEeCCCCC
Confidence 456778887643 23444443 2222 2 556654 5556555 6 677777663222
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
-.+.+. .......+++. |+.++.+ . |..++..+++.+.+ .++|++|..
T Consensus 147 g~G~tH---~~~~~a~lr~iPnl~V~~P---a-d~~e~~~~l~~a~~-~~gPv~ir~ 195 (356)
T PLN02683 147 GVGAQH---SQCFAAWYSSVPGLKVLAP---Y-SSEDARGLLKAAIR-DPDPVVFLE 195 (356)
T ss_pred CCCCcc---ccCHHHHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEE
Confidence 223332 22235788886 9999999 4 89999999999886 688999864
No 254
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=85.37 E-value=16 Score=36.04 Aligned_cols=117 Identities=17% Similarity=0.054 Sum_probs=67.5
Q ss_pred CCCCccccCCc-h-HHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-cc------
Q 004970 456 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 524 (721)
Q Consensus 456 ~~p~R~~~~GI-a-E~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~------ 524 (721)
..|.+|+..+- . =...++.|.|.++... =++++.. -..|+.. ..-+..++..++|+++++...+. +.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~~~-~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARP-DKTVICIDGDGSFQMN-IQELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCC-CCeEEEEEcccHHhcc-HHHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35778886532 1 1123445666655432 1566654 5566533 23366667778998777766654 21
Q ss_pred ---CCC-CCCCC-Chhhh-HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 525 ---GED-GPTHQ-PIEHL-ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 525 ---g~d-G~THq-~~edi-a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
+.. ..++. +..|. .+.+++ |+.-+.-.+..|+..+++.++. .++|++|-+
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 110 11111 12233 333444 6666777889999999999996 589999865
No 255
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=84.91 E-value=12 Score=37.88 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCCCccccCCchHHHHHH----HHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-cc----
Q 004970 456 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL---- 524 (721)
Q Consensus 456 ~~p~R~~~~GIaE~~~vg----~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~---- 524 (721)
..|.+|+..+- ...+| .|.|.++... =+|++.. -..|+... .-+-.++..++|+++++...+. +.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p-~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAKP-DREVYVLVGDGSYLMLH-SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhCC-CCeEEEEEccchhhccH-HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886532 23333 5566554432 2566654 55665422 2244456678997666655443 21
Q ss_pred ----CCC--CCC--------------CCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 525 ----GED--GPT--------------HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 525 ----g~d--G~T--------------Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
+.. +.. .++..-..+.+++ |+..+.-.++.|+..+++.+++ .++|++|-+
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 000 1112222333443 6777777999999999999996 689998855
No 256
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=84.12 E-value=9.1 Score=38.35 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=65.7
Q ss_pred CCCCccccCCc-hH-HHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEec-CCccc-C----
Q 004970 456 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTH-DSIGL-G---- 525 (721)
Q Consensus 456 ~~p~R~~~~GI-aE-~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~-~g~~~-g---- 525 (721)
..|.+|+..+- .= ...+..|.|.++... =+|++++ -..|+.- ..-+..++..++|+++++-. .+++. .
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-~r~vv~i~GDG~f~m~-~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAP-DRPVVAIAGDGAWGMS-MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCC-CCcEEEEEcchHHhcc-HHHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886421 11 223445666554321 2677765 4556543 23355556668998777744 44331 0
Q ss_pred -CCCC-----CCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH--cCCCcEEEEE
Q 004970 526 -EDGP-----THQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKRPSILAL 576 (721)
Q Consensus 526 -~dG~-----THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~--~~~~P~~Irl 576 (721)
..+. .+.. .|..-+..-=|+.-+.-.++.|+..+|+.+++ +.++|++|-+
T Consensus 119 ~~~~~~~~~~~~~~-~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELES-ESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCCC-CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 0110 1112 23332222226677788899999999999985 1488998865
No 257
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=83.92 E-value=7.3 Score=37.40 Aligned_cols=100 Identities=18% Similarity=0.049 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCC------------CCCChhhh
Q 004970 472 GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP------------THQPIEHL 537 (721)
Q Consensus 472 vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~------------THq~~edi 537 (721)
++.|.|+++..+ =++++.. -..|.. .+..+......++|+++++...+... ..+. ...+..|+
T Consensus 52 ~~~a~Gaa~a~~-~~~vv~~~GDG~~~~-~~~~l~ta~~~~~~~~~iv~nN~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 52 LPAAIGAALAAP-DRPVVCIAGDGGFMM-TGQELATAVRYGLPVIVVVFNNGGYG-TIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred HHHHHHHHHhCC-CCcEEEEEcCcHHhc-cHHHHHHHHHcCCCcEEEEEECCccH-HHHHHHHHHcCCCcccccCCCCCH
Confidence 345666665542 1455543 455554 34455556677999888887666531 1110 11112233
Q ss_pred -HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 538 -ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 538 -a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
.+.++ -|+....-.+..|+..+++.+.. .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 33444 37777777889999999999985 689998864
No 258
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=83.59 E-value=15 Score=36.78 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--------------CC---
Q 004970 473 AICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------QP--- 533 (721)
Q Consensus 473 g~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--------------q~--- 533 (721)
+.|.|.++... =++++.+ -..|++.....+......++||++++-..+. +|.-+..+ ++
T Consensus 58 paAiGa~la~p-~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~-yg~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 58 AVATGVKLANP-DLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQI-YGLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHhCC-CCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcc-cccCCCccCCCCCCCCcccCCCCCCCC
Confidence 35566554332 2677765 3444444445566667789998877655443 33222111 00
Q ss_pred -hhhh-HHHhcC--CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 534 -IEHL-ASFRAM--PNILMLRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 534 -~edi-a~lr~i--Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
.-|. .+.+++ +........++.|+...++.+++ .++|++|-+.
T Consensus 136 ~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev~ 182 (193)
T cd03375 136 EPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEVL 182 (193)
T ss_pred CCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 0122 233333 22222468999999999999997 6899998763
No 259
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=83.49 E-value=5.7 Score=46.97 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=75.5
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++.+ -.|++++.+|-|+|...+ +|-+ .++.+=+..+..-|.++-..+.||+++....... .+. .++|.++
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~--~~~q~~d 117 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTG--EVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGG--HYQQEVD 117 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcCC--CCCCccC
Confidence 466666 889999999999997543 3443 3567767777777777778899999986332222 232 2466676
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~Irl~r~ 579 (721)
...+++.+=--......++.++...++ .|+. ..+|+||-+|..
T Consensus 118 ~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~-~~gPV~i~iP~D 164 (597)
T PRK08273 118 LQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALA-ERTVTAVILPND 164 (597)
T ss_pred HHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCcc
Confidence 777887653112334555555555544 4443 468999999864
No 260
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=83.43 E-value=18 Score=34.33 Aligned_cols=116 Identities=19% Similarity=0.085 Sum_probs=66.9
Q ss_pred CCCCccccC--CchHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-cc------
Q 004970 456 TPEERNVRF--GVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 524 (721)
Q Consensus 456 ~~p~R~~~~--GIaE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~------ 524 (721)
..|.||+.. .-+=...++.|.|.++... =++++.+ -..|+.- ...+......++|+++++-..+. +.
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p-~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARP-DRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHST-TSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcC-cceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347787762 2223345556666665421 2566654 5666554 44566667778897776655543 21
Q ss_pred -CCC-------CCCCCChhhhHHHhcCCCcEEEe--eCCHHHHHHHHHHHHHcCCCcEEEE
Q 004970 525 -GED-------GPTHQPIEHLASFRAMPNILMLR--PADGNETAGAYKVAVANRKRPSILA 575 (721)
Q Consensus 525 -g~d-------G~THq~~edia~lr~iPnl~V~~--P~d~~e~~~~l~~a~~~~~~P~~Ir 575 (721)
... +.+.+.++-..+.+++ |+..+. +.|.+|++.+++.+++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 011 0012223333444444 666666 4455999999999996 69999984
No 261
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=82.99 E-value=11 Score=37.84 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=66.6
Q ss_pred CCCCccccCCc-hH-HHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-ccCC----
Q 004970 456 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGE---- 526 (721)
Q Consensus 456 ~~p~R~~~~GI-aE-~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~g~---- 526 (721)
..|.+|++.+- .= ...++.|.|.++... =+|++++ -..|...+ .-+......++|+++++-.++. +.-.
T Consensus 45 ~~~~~~~~~~~~GsmG~~lpaaiGa~la~p-~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~ 122 (202)
T cd02006 45 YKPRHWINCGQAGPLGWTVPAALGVAAADP-DRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQR 122 (202)
T ss_pred CCCCeEEccCCccchhhhhHHHHhHHhhCC-CCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHH
Confidence 45788887642 11 113345666554421 2677765 45554433 2345556678997777655543 3100
Q ss_pred ---CC----CCCCC---------hhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 004970 527 ---DG----PTHQP---------IEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 527 ---dG----~THq~---------~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl 576 (721)
++ ..+.. .-|.+ +-+++ |+.-+.-.++.|+..+|+.++. ..++|++|-+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 123 AFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 00 00110 01222 23333 6777888999999999999985 2578998865
No 262
>PLN02573 pyruvate decarboxylase
Probab=82.96 E-value=7.2 Score=45.98 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=72.0
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh---
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 534 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~--- 534 (721)
|++.+ -.|++++.+|-|.|..-+ .++|. ++.+=...+...+.++-..+.||+++....... .+.++..||.+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg--~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 55555 789999999999998653 56664 566655556666666666799999997332222 35555566543
Q ss_pred ---hhhHHHhcCCCcEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 004970 535 ---EHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 535 ---edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~Irl~r~ 579 (721)
.++.+++.+-. ......+++++. .+++.|+. ..+|+||-+|+.
T Consensus 133 ~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~-~~gPV~l~iP~D 182 (578)
T PLN02573 133 DFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALK-ESKPVYISVSCN 182 (578)
T ss_pred ChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHh-cCCCEEEEeehh
Confidence 22355554432 222334455444 45555554 468999999875
No 263
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=81.98 E-value=22 Score=33.79 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=69.6
Q ss_pred CeEEEcCCcchHHHHHHHHHhCCCCccc-CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh
Q 004970 142 DRFVLSAGHGCMLQYALLHLAGYDSVQV-TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 220 (721)
Q Consensus 142 D~~V~s~Gh~~~~~y~~l~l~G~~gie~-~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~ 220 (721)
+.++.-.|+....++..+... ++++ .+-+=..+..+|.|.+++.. ..-++++...-++. .
T Consensus 13 ~~vfg~pg~~~~~l~~~~~~~---~~~~i~~~~E~~A~~~A~g~~~~~~--------------~~~v~~~~~gpG~~--n 73 (155)
T cd07035 13 DHVFGVPGGAILPLLDALARS---GIRYILVRHEQGAVGMADGYARATG--------------KPGVVLVTSGPGLT--N 73 (155)
T ss_pred CEEEECCCCchHHHHHHhccC---CCEEEEeCCHHHHHHHHHHHHHHHC--------------CCEEEEEcCCCcHH--H
Confidence 555556666665555544321 3332 22233344555666665532 12244444255554 5
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cC-CC
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VT-DK 296 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~-~~ 296 (721)
..+++..|...++ |+++|.-+....-.+.. .....|....++.+--...++ + +.+++.+.+.+|.+ .. .+
T Consensus 74 ~~~~l~~A~~~~~-Pll~i~~~~~~~~~~~~-~~q~~d~~~~~~~~~~~~~~i---~-~~~~~~~~i~~A~~~a~~~~~g 147 (155)
T cd07035 74 AVTGLANAYLDSI-PLLVITGQRPTAGEGRG-AFQEIDQVALFRPITKWAYRV---T-SPEEIPEALRRAFRIALSGRPG 147 (155)
T ss_pred HHHHHHHHHhhCC-CEEEEeCCCccccccCC-cccccCHHHHHHHHhceEEEc---C-CHHHHHHHHHHHHHHhcCCCCC
Confidence 6689999999998 56665544332211111 011234455555553335666 3 66665555555533 13 67
Q ss_pred CEEEEE
Q 004970 297 PTLIRV 302 (721)
Q Consensus 297 P~lI~~ 302 (721)
|+.|.+
T Consensus 148 Pv~l~i 153 (155)
T cd07035 148 PVALDL 153 (155)
T ss_pred cEEEEe
Confidence 998875
No 264
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=81.36 E-value=9.4 Score=45.38 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=69.2
Q ss_pred Cccccch-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHH-HHHHhcCCCeEEEEEECCCcc-
Q 004970 170 TTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS- 246 (721)
Q Consensus 170 ~~G~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal-~~a~~~~L~~li~IvddN~~~- 246 (721)
.+|..=+ .++.|.|+|+. ..+.||.+ -+.|.. -.++-+ +.++..++ |++++.+..++.
T Consensus 356 d~GIaEq~~vg~AaGlA~~----------------G~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~l-pV~i~~~~~G~~g 416 (617)
T TIGR00204 356 DVAIAEQHAVTFAAGMAIE----------------GYKPFVAI-YSTFLQ-RAYDQVVHDVCIQKL-PVLFAIDRAGIVG 416 (617)
T ss_pred cCCccHHHHHHHHHHHHHC----------------CCEEEEEe-cHHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcCC
Confidence 3444433 35667777753 22444444 566654 666666 55778888 788888877663
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
-++++. ...+|+ ..++.. |+.++.+ . |..++...++.+.+..++|++|...
T Consensus 417 ~dG~tH-~~~~di-a~lr~iPgl~V~~P---s-d~~e~~~~l~~a~~~~~~Pv~ir~~ 468 (617)
T TIGR00204 417 ADGETH-QGAFDI-SYLRCIPNMVIMAP---S-DENELRQMLYTGYHYDDGPIAVRYP 468 (617)
T ss_pred CCCccc-ccchHH-HHHhcCCCcEEEee---C-CHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 223332 223444 466665 9999999 4 8999999999988633489988443
No 265
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=81.24 E-value=9.7 Score=36.94 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred EEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHH
Q 004970 206 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDD 282 (721)
Q Consensus 206 ~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~ 282 (721)
.++++... |.. ..++.+.+...++ ++.+++..+.+. +.++++. ...+...+++.. |+.++.+ . |..+
T Consensus 75 pi~~~~~~--f~~-~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH--~~~~~~~~~~~iP~~~v~~P---~-~~~e 144 (168)
T smart00861 75 PVVAIFFT--FFD-RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTH--HSQEDEALLRAIPGLKVVAP---S-DPAE 144 (168)
T ss_pred cEEEeeHH--HHH-HHHHHHHHhCccc-CCCEEEEecCccccCCCCccc--cchhHHHHHhcCCCcEEEec---C-CHHH
Confidence 35555433 322 6788888888887 344444444333 3334332 222344456654 8888888 4 8999
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 004970 283 IRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 283 l~~al~~a~~~~~~P~lI~~ 302 (721)
+...++.+.+..++|++|..
T Consensus 145 ~~~~l~~a~~~~~~p~~i~~ 164 (168)
T smart00861 145 AKGLLRAAIRRDDGPPVIRL 164 (168)
T ss_pred HHHHHHHHHhCCCCCEEEEe
Confidence 99999998863468977644
No 266
>PRK05899 transketolase; Reviewed
Probab=81.18 E-value=12 Score=44.68 Aligned_cols=84 Identities=23% Similarity=0.221 Sum_probs=60.5
Q ss_pred ECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccc--cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHH
Q 004970 211 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAI 287 (721)
Q Consensus 211 iGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al 287 (721)
..-..|. ...++++.+....++ |++++....+++. ++.+. ...+|+. .+++. |+.++.+ . |..++...+
T Consensus 397 ~t~~~F~-~r~~~qir~~~~~~~-pv~~v~~~~G~~~g~~G~tH-q~~edia-~~r~iP~~~V~~P---~-d~~e~~~~l 468 (624)
T PRK05899 397 GTFLVFS-DYARNAIRLAALMKL-PVIYVFTHDSIGVGEDGPTH-QPVEQLA-SLRAIPNLTVIRP---A-DANETAAAW 468 (624)
T ss_pred EEcHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcCcCCCCCCc-ccHHHHH-HHHhCCCcEEEeC---C-CHHHHHHHH
Confidence 3344665 688999999888887 7788877777654 45554 2333433 45555 9999999 4 899999999
Q ss_pred HHHHhcCCCCEEEEE
Q 004970 288 KEAKAVTDKPTLIRV 302 (721)
Q Consensus 288 ~~a~~~~~~P~lI~~ 302 (721)
+.+.+..++|++|..
T Consensus 469 ~~a~~~~~~P~~ir~ 483 (624)
T PRK05899 469 KYALERKDGPSALVL 483 (624)
T ss_pred HHHHHcCCCCEEEEE
Confidence 999872379998866
No 267
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=81.14 E-value=16 Score=38.28 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=62.8
Q ss_pred HHHHHHHHhc----CCCCccEEE-EchhHHH-hHHHHHHHhhhcCCc-EEEEEecCCcccCCCCCCC--CChhhhH-HHh
Q 004970 472 GAICNGIALH----SPGLIPYCA-TFFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-SFR 541 (721)
Q Consensus 472 vg~aaGlA~~----G~~~~Piv~-~~~~F~~-r~~dqir~~a~~~~p-V~~v~t~~g~~~g~dG~TH--q~~edia-~lr 541 (721)
++.|.|+|+. +..-+.+|. -...|.. ..++.+..++..++| +++++...++ +.++.++ ...++++ .++
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~--~~~~~~~~~~~~~~~~~~~~ 188 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI--QIDGPTDDILFTEDLAKKFE 188 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCc--cccCcHhhccCchhHHHHHH
Confidence 3456666553 111134443 2566654 467777777778887 6666655544 4455553 2334443 444
Q ss_pred cCCCcEEEeeC--CHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 542 AMPNILMLRPA--DGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 542 ~iPnl~V~~P~--d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
++ |+.++.-. |..++..+++.+.+..++|++|..
T Consensus 189 a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 189 AF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred Hc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44 77777666 899999999998864378998875
No 268
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=80.90 E-value=9.9 Score=43.49 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=46.4
Q ss_pred hcCCCeEEEEEECCCccccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 230 HLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 230 ~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
.+++ |++|+..|.+.+-.+. .+..+...+++.. |+.++.+ . |..+....++.+.+ .++|++|.
T Consensus 246 ~~~~-pVv~~g~~G~~~~~G~---hhs~~d~a~~~~iPgl~V~~P---~-d~~d~~~ll~~ai~-~~~Pv~il 309 (464)
T PRK11892 246 QMGC-PIVFRGPNGAAARVAA---QHSQDYAAWYSHIPGLKVVAP---Y-SAADAKGLLKAAIR-DPNPVIFL 309 (464)
T ss_pred ccCC-CEEEEecCCCCCCCCC---ccccCHHHHHhhCCCCEEEEe---C-CHHHHHHHHHHHhh-CCCcEEEE
Confidence 7788 6777766666544332 3334456788887 9999999 4 89999999999987 67899874
No 269
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=80.60 E-value=5.6 Score=52.69 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=82.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
-|++.+ .-|++++-+|-|+|...+ +|.+ .|..+=...++..+-.+...+.||+++........- +-..+|.+++
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~Tg--kpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~-~~ga~Q~iDq 415 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSL--KPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQ-DAGANQAINQ 415 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHh-cCCCCcccch
Confidence 466655 899999999999998664 6666 467777777777888778889999998633222221 1224788899
Q ss_pred hHHHhcCCCcEEEe--eCCH-------HHHHHHHHHHHHcCCCcEEEEEcC
Q 004970 537 LASFRAMPNILMLR--PADG-------NETAGAYKVAVANRKRPSILALSR 578 (721)
Q Consensus 537 ia~lr~iPnl~V~~--P~d~-------~e~~~~l~~a~~~~~~P~~Irl~r 578 (721)
.++++.+-...+-. |.+. ..+..+++.|.....|||+|-+|.
T Consensus 416 ~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 416 VNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 99999887765443 4442 345566666664456999999984
No 270
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=80.37 E-value=11 Score=44.90 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=58.9
Q ss_pred EEEEEECCCccChhhHHHHH-HHHHhcCCCeEEEEEECCCcc-ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHH
Q 004970 206 YTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS-IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDD 282 (721)
Q Consensus 206 ~vv~viGDG~~~eG~~~Eal-~~a~~~~L~~li~IvddN~~~-i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~ 282 (721)
.++++ =..|.. ..++.+ +.++..++ |++++++..++. .++++. ...+|+ ..++.. |+.++.+ . |..+
T Consensus 387 P~v~~--f~~Fl~-ra~dQI~~~~a~~~l-pv~~v~~~~G~~g~dG~TH-q~~~di-a~lr~iPnl~V~~P---s-d~~e 456 (641)
T PRK12571 387 PFCAV--YSTFLQ-RGYDQLLHDVALQNL-PVRFVLDRAGLVGADGATH-AGAFDL-AFLTNLPNMTVMAP---R-DEAE 456 (641)
T ss_pred EEEEe--hHHHHH-HHHHHHHHHHhhcCC-CeEEEEECCCcCCCCCccc-cccHHH-HHHhcCCCCEEEee---C-CHHH
Confidence 44554 445654 778887 55788898 677888766653 223332 122333 466665 9999999 4 8999
Q ss_pred HHHHHHHHHhcCCCCEEEEEE
Q 004970 283 IRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 283 l~~al~~a~~~~~~P~lI~~~ 303 (721)
+..+++.|.+..++|++|...
T Consensus 457 ~~~~l~~a~~~~~~P~~ir~~ 477 (641)
T PRK12571 457 LRHMLRTAAAHDDGPIAVRFP 477 (641)
T ss_pred HHHHHHHHHhCCCCcEEEEEe
Confidence 999999988633789988543
No 271
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=79.90 E-value=12 Score=41.68 Aligned_cols=109 Identities=13% Similarity=0.044 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 256 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~ 256 (721)
++.+|+|+++|- .++++...=+++. ...|.+.+++-..+|-+++++++-+-+..-++.....
T Consensus 60 A~~~a~GAs~aG----------------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~ 121 (376)
T PRK08659 60 SMAAVIGASWAG----------------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQG 121 (376)
T ss_pred HHHHHHhHHhhC----------------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcH
Confidence 456677777653 3577777777777 8899999999999977777777655332222321122
Q ss_pred ccHHHHHhh---CCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeec
Q 004970 257 ENVDKRFEG---LGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 307 (721)
Q Consensus 257 ~~~~~~~~a---~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg 307 (721)
+-...++.. ++|-++.+ . |+++.+....+|.+ +.+-|+++...+.-+
T Consensus 122 D~~~~~~~~hgd~~~ivl~p---~-~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ls 174 (376)
T PRK08659 122 DMMQARWGTHGDHPIIALSP---S-SVQECFDLTIRAFNLAEKYRTPVIVLADEVVG 174 (376)
T ss_pred HHHHHhcccCCCcCcEEEeC---C-CHHHHHHHHHHHHHHHHHHCCCEEEEechHhh
Confidence 222334443 45877776 4 77776555444432 246799887776433
No 272
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=79.81 E-value=11 Score=41.41 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCCcc-EEEE-chhHHH---hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh----HH
Q 004970 469 HGMGAICNGIALHSPGLIP-YCAT-FFVFTD---YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL----AS 539 (721)
Q Consensus 469 ~~~vg~aaGlA~~G~~~~P-iv~~-~~~F~~---r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi----a~ 539 (721)
-+++|+|-++-+.|. .. |+.+ |.+=.. --++.+.+++++++||+|++-..+++.+ ---..|...++ +.
T Consensus 143 ~~AaG~A~a~k~~~~--~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS-vp~~~q~~~~~~~~ra~ 219 (358)
T COG1071 143 PLAAGAALALKYRGT--KDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS-VPRSRQTAAEIIAARAA 219 (358)
T ss_pred cHHHHHHHHHHHhCC--CCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee-cchhhcccchhHHhhhh
Confidence 344555555555663 33 4443 333322 2345566679999999999988888765 12222433332 23
Q ss_pred HhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEE
Q 004970 540 FRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILAL 576 (721)
Q Consensus 540 lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~Irl 576 (721)
--.||+++| -=-|...+..+.+.|+++ .++|++|-.
T Consensus 220 aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 220 AYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 348999999 555555555566666643 568999864
No 273
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=79.75 E-value=13 Score=39.94 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCC----C----------CC---
Q 004970 472 GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP----T----------HQ--- 532 (721)
Q Consensus 472 vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~----T----------Hq--- 532 (721)
+.+|.|.++... =++++.+ -.+|+......+-.++..++|+++++-..+. +|.-+. + .+
T Consensus 76 lpaAiGaklA~p-d~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~-YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 76 IAFATGAKLANP-DLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGI-YGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHCC-CCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCch-hhcccCcccCCcCCCcccccccCCCc
Confidence 445666555432 2566654 5555444445555567789998877755543 332221 0 01
Q ss_pred -ChhhhHHHhcCCCcEEE---eeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 533 -PIEHLASFRAMPNILML---RPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 533 -~~edia~lr~iPnl~V~---~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
...|+..+..--|...+ ...+..|+..+++.|++ +++|++|-+
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333322355544 68999999999999996 689999875
No 274
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=79.65 E-value=54 Score=32.60 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=59.5
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCC-cEEEEEecCCcccCCCC--CCC
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEA-GVIYVMTHDSIGLGEDG--PTH 531 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~-pV~~v~t~~g~~~g~dG--~TH 531 (721)
.|.+|+..|-- ...++.|.|+++... =+|++.+ -..|+.- ..-+...+..++ |+++++-..+. +|..+ .++
T Consensus 40 ~~~~~~~~g~m-G~~lpaAiGaala~p-~~~Vv~i~GDG~f~m~-~~eL~ta~~~~l~~i~ivV~NN~~-yg~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSM-GHASQIALGIALARP-DRKVVCIDGDGAALMH-MGGLATIGGLAPANLIHIVLNNGA-HDSVGGQPTV 115 (188)
T ss_pred ccCceeecCcc-ccHHHHHHHHHHhCC-CCcEEEEeCCcHHHhh-ccHHHHHHHcCCCCcEEEEEeCch-hhccCCcCCC
Confidence 45888864221 113345666665431 1566654 4555432 223444555565 55544444332 22111 111
Q ss_pred -CChhhhHHHhcCCCcE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 532 -QPIEHLASFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 532 -q~~edia~lr~iPnl~-V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
....-..+.+++ |+. +....+.+|+..+++.+++ .++|++|.+
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112222333333 444 3456799999999999996 589998865
No 275
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=78.25 E-value=13 Score=40.54 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.7
Q ss_pred eEEEEEECCCccccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 235 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
++++...+..++-++.+ +...+..++++. |+.++.+ . |..++..+++.+.+ .++|++|..
T Consensus 112 ~vv~~~~~g~~~~~G~t---H~~~~ea~~r~iP~l~V~~P---~-d~~e~~~~l~~a~~-~~~Pv~i~~ 172 (327)
T PRK09212 112 PIVFRGPNGAAARVAAQ---HSQCYAAWYSHIPGLKVVAP---Y-FAADCKGLLKTAIR-DPNPVIFLE 172 (327)
T ss_pred cEEEEeCCCCCCCCCcc---cccCHHHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-CCCcEEEEE
Confidence 45555544444444433 323344788886 9999999 4 89999999999987 689998854
No 276
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.04 E-value=14 Score=43.51 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=65.7
Q ss_pred cccCCchHHHHHHHHHHHHhc----CCCCccEEEE-chhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCC---C
Q 004970 461 NVRFGVREHGMGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT---H 531 (721)
Q Consensus 461 ~~~~GIaE~~~vg~aaGlA~~----G~~~~Piv~~-~~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~T---H 531 (721)
++..|+.= +.+++|.|+|+. |..-+.|+.+ -..|.. ..++.+.+++.++.|++++....+++. ++++ .
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si--~~~~~~~~ 185 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSI--AENHGGLY 185 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcC--CCCCchhh
Confidence 35666643 466777887653 3211233322 455555 678999999888899999998777753 2222 1
Q ss_pred CChh--------h-hHHHhcCCCcEEEeeCCHHHHH---HHHHHHHHcCCCcEEEEE
Q 004970 532 QPIE--------H-LASFRAMPNILMLRPADGNETA---GAYKVAVANRKRPSILAL 576 (721)
Q Consensus 532 q~~e--------d-ia~lr~iPnl~V~~P~d~~e~~---~~l~~a~~~~~~P~~Irl 576 (721)
..+. + ...+.++ |+..+.|.|++|+. .+++.+.. .++|++|..
T Consensus 186 ~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~ 240 (581)
T PRK12315 186 KNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHI 240 (581)
T ss_pred hhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1111 1 1345555 67666665555554 45555543 578998865
No 277
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.01 E-value=15 Score=43.33 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHH-HHhcCCCeEEEEEECCCcc-ccccccccc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL-AGHLGLGKLIAFYDDNHIS-IDGDTEIAF 255 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~-a~~~~L~~li~IvddN~~~-i~~~~~~~~ 255 (721)
++.|.|+|+. ..++||.+ =..|.. ..+|.+.. ++..++ |++++....++. -++++. ..
T Consensus 334 vg~A~GlA~~----------------G~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~-pv~~v~~~~G~~g~dG~tH-~~ 393 (580)
T PRK05444 334 VTFAAGLATE----------------GLKPVVAI-YSTFLQ-RAYDQVIHDVALQNL-PVTFAIDRAGLVGADGPTH-QG 393 (580)
T ss_pred HHHHHHHHHC----------------CCeeEEEe-eHHHHH-HHHHHHHHHhhhcCC-CEEEEEeCCCcCCCCCccc-cc
Confidence 4567787763 22444444 556664 77775544 778888 677777655543 223222 22
Q ss_pred cccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 256 TENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 256 ~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
.+|+ ..+++. |+.++.+ . |..++..+++.+.+..++|++|..
T Consensus 394 ~edi-a~lr~iP~l~V~~P---s-d~~e~~~~l~~a~~~~~~P~~ir~ 436 (580)
T PRK05444 394 AFDL-SYLRCIPNMVIMAP---S-DENELRQMLYTALAYDDGPIAIRY 436 (580)
T ss_pred cHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHhCCCCcEEEEe
Confidence 2333 466665 9999999 4 899999999999863378988744
No 278
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=77.47 E-value=15 Score=39.24 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC-----------------
Q 004970 471 MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------------- 531 (721)
Q Consensus 471 ~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH----------------- 531 (721)
.+..|.|+.+... =+|++.. -..|..-....+-.++..++||++++-..+. +|.-|...
T Consensus 65 alp~AiGaklA~p-d~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~-Yg~t~~Q~s~~t~~g~~~~~~p~g~ 142 (280)
T PRK11869 65 AIPAATAVKATNP-ELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQV-YGLTKGQASPTTLKGFKTPTQPWGV 142 (280)
T ss_pred HHHHHHHHHHHCC-CCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHH-HhhhcceecCCCCCCcccccCCCCc
Confidence 3445566655442 2677765 4555444356666677889998888765543 32111000
Q ss_pred -CChhhhHHHhcCCCcEEEe---eCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 532 -QPIEHLASFRAMPNILMLR---PADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 532 -q~~edia~lr~iPnl~V~~---P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
...-|+.-+..--|...++ +.++.|+..+++.|++ +++|++|-+-
T Consensus 143 ~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~-~~Gp~lIeV~ 191 (280)
T PRK11869 143 FEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK-HKGLAIVDIF 191 (280)
T ss_pred cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 0011232232222444445 9999999999999996 6999999763
No 279
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=76.25 E-value=11 Score=44.08 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=73.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCC-CCC-
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP- 533 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~T-Hq~- 533 (721)
-|++.+ --|++++-+|-|+|..-+ +|-| .++.+=...+...|..+...+.||+++....... .+.+... ||.
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 115 (535)
T TIGR03394 39 LPLHTL-SHEPAVGFAADAAARYRG--TLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR 115 (535)
T ss_pred CeEEcc-cCcchHHHHHhHHHHhhC--CceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeecc
Confidence 367775 899999999999998643 3433 3566666667777777778899999996332222 2322222 454
Q ss_pred -hh-hhHHHhcCCCc--EEEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 534 -IE-HLASFRAMPNI--LMLRPAD-GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 534 -~e-dia~lr~iPnl--~V~~P~d-~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
+. +..+++.+=-. .|..|.+ +..+..+++.|+. .++|++|-+|+.
T Consensus 116 ~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~D 165 (535)
T TIGR03394 116 TLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRD 165 (535)
T ss_pred chHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechh
Confidence 33 34667755332 2233333 2334556666664 579999999875
No 280
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=75.77 E-value=22 Score=42.63 Aligned_cols=82 Identities=24% Similarity=0.217 Sum_probs=57.9
Q ss_pred CCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHH
Q 004970 213 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKE 289 (721)
Q Consensus 213 DG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~ 289 (721)
-..|.. ..++++..++..++ |+++|....++ +.+++|. ...+++. .+++. |+.++.+ . |..++..+++.
T Consensus 428 f~~F~~-r~~~~ir~~a~~~l-pV~~v~th~g~~~G~dG~TH-q~iedia-~lr~iPn~~v~~P---a-D~~E~~~~~~~ 499 (653)
T TIGR00232 428 FLMFVD-YARPAIRLAALMKL-PVIYVYTHDSIGVGEDGPTH-QPIEQLA-SLRAIPNLSVWRP---C-DGNETAAAWKY 499 (653)
T ss_pred hHHHHH-HHHHHHHHHHhcCC-CEEEEEeCCccCCCCCCccc-CCHHHHH-HHhcCCCCEEEee---C-CHHHHHHHHHH
Confidence 345654 77889999999998 67777755444 4445554 2334443 56765 9999999 4 88999999998
Q ss_pred HHhcCCCCEEEEE
Q 004970 290 AKAVTDKPTLIRV 302 (721)
Q Consensus 290 a~~~~~~P~lI~~ 302 (721)
+.+..++|++|..
T Consensus 500 a~~~~~gP~~irl 512 (653)
T TIGR00232 500 ALESQDGPTALIL 512 (653)
T ss_pred HHhcCCCcEEEEE
Confidence 8843678988743
No 281
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=74.76 E-value=78 Score=30.77 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCC-------HHHHHHHHHHHHhcCC
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG-------YDDIRAAIKEAKAVTD 295 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d-------~~~l~~al~~a~~~~~ 295 (721)
-++..|...+. |+++|.-+-.....+. ......|...+++.+--...++.+.. + ++.+.+|+..|.....
T Consensus 77 ~gl~~A~~~~~-Pvl~i~g~~~~~~~~~-~~~q~~d~~~l~~~vtk~~~~v~~~~-~~~~~~~~~~~i~~A~~~A~~~~~ 153 (162)
T cd07037 77 PAVVEAYYSGV-PLLVLTADRPPELRGT-GANQTIDQVGLFGDYVRWSVDLPPPE-DDDDLWYLLRLANRAVLEALSAPP 153 (162)
T ss_pred HHHHHHHhcCC-CEEEEECCCCHHhcCC-CCCcccchhhhccceeeEEEecCCcc-cchhHHHHHHHHHHHHHHHhCCCC
Confidence 46666666665 5655554322211111 11111244556665532344453545 5 4667777877765345
Q ss_pred CCEEEEEE
Q 004970 296 KPTLIRVT 303 (721)
Q Consensus 296 ~P~lI~~~ 303 (721)
+|++|++-
T Consensus 154 GPv~l~iP 161 (162)
T cd07037 154 GPVHLNLP 161 (162)
T ss_pred CCEEEecc
Confidence 89998763
No 282
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=74.73 E-value=21 Score=42.46 Aligned_cols=113 Identities=20% Similarity=0.137 Sum_probs=67.0
Q ss_pred Cccccch-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHH-HHHHhcCCCeEEEEEECCCcc-
Q 004970 170 TTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS-SLAGHLGLGKLIAFYDDNHIS- 246 (721)
Q Consensus 170 ~~G~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal-~~a~~~~L~~li~IvddN~~~- 246 (721)
.+|.-=+ .++.|.|+|+.. -++++++ =+.|.. -.++-+ +.++..++ |++++++..++.
T Consensus 403 dvGIAEq~~Vg~AaGLA~~G---------------~rPvv~~--fs~Fl~-RA~DQI~~dva~~~l-pV~~v~~~aG~~g 463 (641)
T PLN02234 403 DVGIAEQHAVTFAAGLACEG---------------LKPFCTI--YSSFMQ-RAYDQVVHDVDLQKL-PVRFAIDRAGLMG 463 (641)
T ss_pred CCCcCHHHHHHHHHHHHHCC---------------CeEEEEe--hHHHHH-HHHHHHHHHHhhcCC-CEEEEEeCCccCC
Confidence 3444433 345677777632 2344444 344543 455544 45577888 678888777653
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccC
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G 309 (721)
.++++. ...+|+. +++.+ |+.++.+ . |..++..+++.+....++|++| +..|+.+
T Consensus 464 ~dG~TH-~~~~Dia-~lr~iPnl~V~~P---s-d~~E~~~~l~~a~~~~~~Pv~i--r~~R~~~ 519 (641)
T PLN02234 464 ADGPTH-CGAFDVT-FMACLPNMIVMAP---S-DEAELFNMVATAAAIDDRPSCF--RYHRGNG 519 (641)
T ss_pred CCCccc-cccHHHH-HHhcCCCCEEEee---C-CHHHHHHHHHHHHhCCCCCEEE--Eeecccc
Confidence 223332 1223333 44554 9999999 4 8999999999876534689887 5666543
No 283
>PTZ00089 transketolase; Provisional
Probab=74.52 E-value=20 Score=43.07 Aligned_cols=102 Identities=20% Similarity=0.028 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--ccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIA 254 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~ 254 (721)
.++.|.|||+..- -.++++.. ..|.. -.++.+..++..+| |+++|+...++ +.+++|..
T Consensus 415 mv~~AaGlA~~~G--------------~~P~~~tf--~~Fl~-Ra~dqir~~al~~l-pV~~v~thdg~~~g~DG~THq- 475 (661)
T PTZ00089 415 MCAIMNGIAAHGG--------------FIPFGATF--LNFYG-YALGAVRLAALSHH-PVIYVATHDSIGLGEDGPTHQ- 475 (661)
T ss_pred HHHHHHHHHHcCC--------------CeEEEEeh--HHHHH-HHHHHHHHHHhcCC-CeEEEEeCCceecCCCCCCcc-
Confidence 4567777776211 13444444 47765 88999999999999 67777755544 44455531
Q ss_pred ccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 255 FTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 255 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
..+|+. .+++. |+.++.+ . |..++..+++.+....++|+.|..
T Consensus 476 ~iedia-~lR~iPn~~V~~P---a-D~~E~~~~l~~al~~~~gP~~irl 519 (661)
T PTZ00089 476 PVETLA-LLRATPNLLVIRP---A-DGTETSGAYALALANAKTPTILCL 519 (661)
T ss_pred cHHHHH-HHhcCCCcEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEe
Confidence 223443 56665 8999999 4 889999999999753679998854
No 284
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=74.39 E-value=20 Score=42.96 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHH-HHHHHhcCCCeEEEEEECCCccc-ccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEA-SSLAGHLGLGKLIAFYDDNHISI-DGDTEIA 254 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Ea-l~~a~~~~L~~li~IvddN~~~i-~~~~~~~ 254 (721)
.++.|.|+|+.. -++++++ =..|.. -.++- .+.++..++ |++++++..++.- ++++. .
T Consensus 410 ~vg~AaGLA~~G---------------~kPvv~~--fs~Fl~-RA~DQI~~dval~~l-pVv~v~~~aG~vg~dG~TH-~ 469 (677)
T PLN02582 410 AVTFAAGLACEG---------------LKPFCAI--YSSFLQ-RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTH-C 469 (677)
T ss_pred HHHHHHHHHHCC---------------CeEEEEe--cHHHHH-HHHHHHHHHHHhcCC-CEEEEEECCCcccCCCCcc-c
Confidence 356677777532 2345555 445543 56664 466678888 7888888665532 23332 1
Q ss_pred ccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 255 FTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 255 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
..+|+. +++.. |+.++.+ . |..++..+++.+....++|++| +..|+.
T Consensus 470 ~~~Dia-~lr~iPnl~V~~P---s-d~~E~~~~l~~al~~~~gPv~I--R~pr~~ 517 (677)
T PLN02582 470 GAFDVT-YMACLPNMVVMAP---S-DEAELFHMVATAAAIDDRPSCF--RYPRGN 517 (677)
T ss_pred ccHHHH-HHhcCCCCEEEee---C-CHHHHHHHHHHHHhCCCCCEEE--EEecCC
Confidence 223333 45554 9999999 4 8899999999888534589987 455654
No 285
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=74.21 E-value=69 Score=34.08 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--------------C-
Q 004970 470 GMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------Q- 532 (721)
Q Consensus 470 ~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--------------q- 532 (721)
..+..|.|+++.-. =++++.+ -..|+......+-.++..++||++++-..+. +|.-+... .
T Consensus 72 ~alPaAiGaklA~P-dr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~-yGmt~~Q~~~~t~~g~~~~~~~~g 149 (277)
T PRK09628 72 RAVAYATGIKLANP-DKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFI-YGLTNSQTSPTTPKGMWTVTAQYG 149 (277)
T ss_pred cHHHHHHHHHHHCC-CCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChH-HhcceecccCCCCCCceeeeccCC
Confidence 45556666655321 2566654 5556432212233356779998888765544 33222100 0
Q ss_pred ---ChhhhHHHhcCCCcEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 004970 533 ---PIEHLASFRAMPNILM---LRPADGNETAGAYKVAVANRKRPSILALS 577 (721)
Q Consensus 533 ---~~edia~lr~iPnl~V---~~P~d~~e~~~~l~~a~~~~~~P~~Irl~ 577 (721)
+..|.+-+..-=|..- ....++.|++.+++.|++ +++|++|-+.
T Consensus 150 ~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~-~~Gp~lIeV~ 199 (277)
T PRK09628 150 NIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS-HKGFSFFDVF 199 (277)
T ss_pred CcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 1112222222124443 578999999999999997 6899999764
No 286
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=73.90 E-value=17 Score=39.91 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=48.7
Q ss_pred ccEEEEch--hHHHh-HHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--CChhhhHHH---hcCCCcEEEeeCCHHH-
Q 004970 486 IPYCATFF--VFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASF---RAMPNILMLRPADGNE- 556 (721)
Q Consensus 486 ~Piv~~~~--~F~~r-~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q~~edia~l---r~iPnl~V~~P~d~~e- 556 (721)
+++++++. .|.+- .++.+..++..++||++++-..+++.+ .+++ ....|++-+ -.+|+..|= -.|..+
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~d~~av 221 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAIS--VPRSKQTAAPTLAQKAIAYGIPGVQVD-GNDVLAV 221 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccc--cchhhhhCCcCHHHHHhhCCCCEEEEC-CCCHHHH
Confidence 45665554 46432 345577778999999999988775432 1222 122333322 245555542 122221
Q ss_pred ---HHHHHHHHHHcCCCcEEEEE
Q 004970 557 ---TAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 557 ---~~~~l~~a~~~~~~P~~Irl 576 (721)
++.+++.+.. .++|++|-.
T Consensus 222 ~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 222 YAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEE
Confidence 3556666664 579999865
No 287
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=72.92 E-value=22 Score=42.65 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=59.9
Q ss_pred cEEEEEECCCccChhhHHHHHHH-HHhcCCCeEEEEEECCCccc-cccccccccccHHHHHhhC-CCeEEEeccCCCCHH
Q 004970 205 HYTYVILGDGCQMEGIANEASSL-AGHLGLGKLIAFYDDNHISI-DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYD 281 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~~~Eal~~-a~~~~L~~li~IvddN~~~i-~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 281 (721)
++++++.. .|.. -.++-+.. ++.+++ |+.++++.-++.- ++++. ....|+ .+++.. |+.++.+ . |..
T Consensus 448 kPvv~iys--tFlq-RAyDQI~~Dval~~l-pV~~vid~aGlvg~DG~TH-~g~~Di-a~lr~IPnm~V~aP---s-D~~ 517 (701)
T PLN02225 448 KPFCIIPS--AFLQ-RAYDQVVHDVDRQRK-AVRFVITSAGLVGSDGPVQ-CGAFDI-AFMSSLPNMIAMAP---A-DED 517 (701)
T ss_pred EEEEEeeh--hHHH-HHHHHHHHHHHhhcC-CceEEEECCccCCCCCccc-cccHHH-HHHhcCCCCEEEee---C-CHH
Confidence 46777774 5654 55665544 677787 6788888766532 23232 222344 466765 9999999 4 899
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 282 DIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 282 ~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
++...++.|....++|++| +..|+.
T Consensus 518 El~~mL~~A~~~~~gPv~I--R~pRg~ 542 (701)
T PLN02225 518 ELVNMVATAAYVTDRPVCF--RFPRGS 542 (701)
T ss_pred HHHHHHHHHHhcCCCCEEE--Eecccc
Confidence 9999998876425689987 445553
No 288
>PRK06154 hypothetical protein; Provisional
Probab=72.34 E-value=29 Score=40.81 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=73.4
Q ss_pred CccccCCchHHHHHHHHHHHHhc-C-CCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCC
Q 004970 459 ERNVRFGVREHGMGAICNGIALH-S-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQP 533 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~-G-~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~ 533 (721)
=|++.+ --|++++.+|.|+|.. | + +|-+ .++.+=+..+..-|.++...+.||+++....... .+. ++.
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~--~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~-~~~--- 127 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGE--RVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDV-APN--- 127 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCC--CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccC-CCC---
Confidence 467775 8999999999999974 2 2 3444 3566666667777777778899999986222111 121 112
Q ss_pred hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 534 IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 534 ~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
++...+++.+=. ......++.++...++.|++ ...+|+||-+|+.
T Consensus 128 ~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 128 FESLRNYRHITK-WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred cchhhhHhhcce-eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 233466766544 34456677777766666653 2478999998864
No 289
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=71.77 E-value=27 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=40.3
Q ss_pred eEEEEEECCCccccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 235 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
+++++.....++.++++. ...+...+++. |+.++.+ . |..++..+++.+.+ .++|++|.
T Consensus 143 ~vv~~~~~g~~g~~G~tH---s~~~ea~lr~iPn~~V~~P---s-d~~e~~~~l~~a~~-~~~P~~i~ 202 (355)
T PTZ00182 143 PIVIRGPNGAVGHGGAYH---SQSFEAYFAHVPGLKVVAP---S-DPEDAKGLLKAAIR-DPNPVVFF 202 (355)
T ss_pred CEEEEeCCCCCCCCCCcc---cchHHHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-CCCcEEEE
Confidence 444443333444444443 22334788886 9999999 4 89999999999987 68999774
No 290
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=71.74 E-value=27 Score=38.14 Aligned_cols=40 Identities=13% Similarity=0.346 Sum_probs=33.1
Q ss_pred ccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 257 ENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 257 ~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
..+..+++.. |+.++.+ . |..++...++.+.+ .++|++|.
T Consensus 131 ~~~ea~~~~iPgl~V~~P---s-d~~d~~~~l~~a~~-~~~Pv~ir 171 (327)
T CHL00144 131 QRLESYFQSVPGLQIVAC---S-TPYNAKGLLKSAIR-SNNPVIFF 171 (327)
T ss_pred ccHHHHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-CCCcEEEE
Confidence 3556888886 9999999 4 89999999998887 78999885
No 291
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=71.44 E-value=1e+02 Score=29.89 Aligned_cols=114 Identities=19% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCCccccCCchHHHH---HHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCC-cccC-----
Q 004970 457 PEERNVRFGVREHGM---GAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG----- 525 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~---vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g-~~~g----- 525 (721)
.|.+|+..+- ..| +..|.|.++.-. -+++++. -..|..- ...+......++|+++++...+ ++.-
T Consensus 39 ~~~~~~~~~~--g~mG~~lp~aiGaala~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~ 114 (178)
T cd02002 39 RPGSYFTLRG--GGLGWGLPAAVGAALANP-DRKVVAIIGDGSFMYT-IQALWTAARYGLPVTVVILNNRGYGALRSFLK 114 (178)
T ss_pred CCCCeeccCC--ccccchHHHHHHHHhcCC-CCeEEEEEcCchhhcc-HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHH
Confidence 5778886533 222 234555554421 1455544 4566432 2335555566999888876664 3320
Q ss_pred ---CC--------CC-CCCChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 526 ---ED--------GP-THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 526 ---~d--------G~-THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
.+ +. ......|++ +.+++ |+..+.-.+..|+..+++.+++ .++|++|-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 001112333 33333 5666677889999999999996 589998854
No 292
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=71.40 E-value=41 Score=32.11 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=45.1
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccc-cccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
++.-|-|.. .....|..|...+. |+++|.-+......+...... ..+....++. .+.+..+ . +++++.+.
T Consensus 69 ~~~~gpG~~---n~~~~l~~a~~~~~-P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~~~ 139 (160)
T cd07034 69 TATSGPGLN---LMAEALYLAAGAEL-PLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAP---S-SVQEAFDL 139 (160)
T ss_pred EeeCcchHH---HHHHHHHHHHhCCC-CEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeC---C-CHHHHHHH
Confidence 344455555 46677888888776 676766544332211101111 1123334444 4666666 3 66665555
Q ss_pred HH----HHHhcCCCCEEEEEE
Q 004970 287 IK----EAKAVTDKPTLIRVT 303 (721)
Q Consensus 287 l~----~a~~~~~~P~lI~~~ 303 (721)
++ .+.. .++|++|...
T Consensus 140 ~~~A~~~a~~-~~~Pv~l~~~ 159 (160)
T cd07034 140 ALEAFELAEK-YRLPVIVLSD 159 (160)
T ss_pred HHHHHHHHHH-hCCCEEEEcC
Confidence 44 4444 4579988653
No 293
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=71.04 E-value=51 Score=32.57 Aligned_cols=118 Identities=14% Similarity=-0.003 Sum_probs=63.4
Q ss_pred CCCccccCCc--hHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcCCcEEEEEecCCc-ccC----CC
Q 004970 457 PEERNVRFGV--REHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLG----ED 527 (721)
Q Consensus 457 ~p~R~~~~GI--aE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~-~~g----~d 527 (721)
.|.+++..+- +=...++.|.|.++.-. -++++.. -..|..-+ .-+...+..++|+++++...+. +.- ..
T Consensus 39 ~~~~~~~~~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDG~f~~~~-~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~ 116 (183)
T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAP-DRRVILLVGDGSFQMTV-QELSTMIRYGLNPIIFLINNDGYTIERAIHGP 116 (183)
T ss_pred CCCEEEeccchhhHhhhHHHHHHHHHhCC-CCeEEEEECCchhhccH-HHHHHHHHhCCCCEEEEEECCCcEEEEEeccC
Confidence 4677776422 11113334555554321 2455543 56674433 3355555667886666555443 320 01
Q ss_pred CCCCCC--hhhh-HHHhcC---CCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 528 GPTHQP--IEHL-ASFRAM---PNILMLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 528 G~THq~--~edi-a~lr~i---Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
+..+.. ..|. .+...+ |++..+...+..|+..+|+.++++.++|++|-+
T Consensus 117 ~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 117 EASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 111211 1232 233333 236777789999999999999963478998865
No 294
>PRK06163 hypothetical protein; Provisional
Probab=70.21 E-value=91 Score=31.49 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEc--hhHHHhHHHHHHHh-hhcCCcEEEEEecC-CcccCCCCCCC-
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRIS-ALCEAGVIYVMTHD-SIGLGEDGPTH- 531 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~--~~F~~r~~dqir~~-a~~~~pV~~v~t~~-g~~~g~dG~TH- 531 (721)
.|.+|+..| +=...+..|.|.++... =++++++. ..|...+ .-+... .+.++|+++++-.. +++. ..+..+
T Consensus 49 ~~~~~~~~G-sMG~glpaAiGaalA~p-~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~~lpi~ivV~NN~~yg~-~~~~~~~ 124 (202)
T PRK06163 49 RPQNFYMLG-SMGLAFPIALGVALAQP-KRRVIALEGDGSLLMQL-GALGTIAALAPKNLTIIVMDNGVYQI-TGGQPTL 124 (202)
T ss_pred CCCCeEeec-ccccHHHHHHHHHHhCC-CCeEEEEEcchHHHHHH-HHHHHHHHhcCCCeEEEEEcCCchhh-cCCccCC
Confidence 466666322 11122235566655432 25677654 4454332 224333 35577876666555 3432 111111
Q ss_pred -CChhhhH-HHhcCCCcE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 532 -QPIEHLA-SFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 532 -q~~edia-~lr~iPnl~-V~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
...-|.. +.+++ |+. -+.-.+..|+..+|+.+++ .++|++|-+
T Consensus 125 ~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 170 (202)
T PRK06163 125 TSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAV 170 (202)
T ss_pred CCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112333 33444 564 5567899999999999996 589998866
No 295
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=69.75 E-value=13 Score=38.48 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 256 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~ 256 (721)
++.+++|++++- .++++..-=.++. ...|.|..++..++|-++++++.-+=+-..++.. ..
T Consensus 48 A~~~~~GAs~aG----------------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~-~q 108 (230)
T PF01855_consen 48 AMEAAIGASAAG----------------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP-EQ 108 (230)
T ss_dssp HHHHHHHHHHTT------------------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB--S
T ss_pred HHHHHHHHHhcC----------------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC-Ch
Confidence 355666776653 3677777777777 8899999999999977777766443221111111 11
Q ss_pred ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHH----HHhcCCCCEEEEEEEeec
Q 004970 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE----AKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 257 ~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~----a~~~~~~P~lI~~~T~kg 307 (721)
.|+. ..+.+||-++.+ . |+.+..+.... |.+ ...|+++...+..+
T Consensus 109 ~D~~-~~~d~~~~vl~p---~-~~QEa~d~~~~A~~lAe~-~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 109 DDLM-AARDSGWIVLAP---S-SPQEAYDMTLIAFNLAEK-YQTPVIVLFDGFLC 157 (230)
T ss_dssp HHHH-HTTTSS-EEEE------SHHHHHHHHHHHHHHHHH-HTSEEEEEEECCCC
T ss_pred hHHH-HHHhcCeEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEechhhh
Confidence 1222 234789998887 3 77665544433 333 57799887765543
No 296
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=69.74 E-value=64 Score=32.32 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHhc----CCCCccEEEEc--hhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcC
Q 004970 471 MGAICNGIALH----SPGLIPYCATF--FVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 543 (721)
Q Consensus 471 ~vg~aaGlA~~----G~~~~Piv~~~--~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~i 543 (721)
.+++|.|+|+. |. =.+++++. ..|.. ..++.+..++..+.|+++++...+++ .+++|- ... ..++.
T Consensus 80 gl~~A~G~Ala~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~--~~~~~~-~~~--~~~~a- 152 (195)
T cd02007 80 SISAALGMAVARDLKGK-KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS--ISPNVG-TPG--NLFEE- 152 (195)
T ss_pred hHHHHHHHHHHHHHhCC-CCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcc--cCCCCC-CHH--HHHHh-
Confidence 34456666543 21 13445444 34432 56777777766699999998666654 345543 222 23443
Q ss_pred CCcEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 544 PNILM---LRPADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 544 Pnl~V---~~P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
-|+.+ +...|..++..+++.+.+ .++|++|..
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 34444 455577888888887765 578999865
No 297
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.88 E-value=36 Score=39.90 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=99.5
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~e 535 (721)
.-|++.+ --||.++.+|.|+|..-+ +|=|+ +-.+=+.....-|.++-+...||+++....... ...=..+|-++
T Consensus 39 ~i~~I~~-RHEq~Aa~mAdgyar~TG--kpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~-~~g~~afQe~D 114 (550)
T COG0028 39 GIRHILV-RHEQGAAFAADGYARATG--KPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTS-LIGTDAFQEVD 114 (550)
T ss_pred CCcEEEe-ccHHHHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCcccc-ccCcchhhhcc
Confidence 4577776 789999999999997543 55443 455555566666777677899999886322221 11123467777
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCCCCCC---------CCCccccccCc------c
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQKLPHL---------AGTSIDGVEKG------A 596 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~~~~~~---------~~~~~~~~~~G------~ 596 (721)
..++++.+-. ..+...+++|+...++.|++ .+.+|++|-+|+.-.... ......+...+ .
T Consensus 115 ~~~l~~p~tk-~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~a 193 (550)
T COG0028 115 QVGLFRPITK-YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPYRPAPPPPEAIRKA 193 (550)
T ss_pred hhhHhhhhhe-eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccccCCCCCCcHHHHHHH
Confidence 7777775543 34556777888777776664 356899999987422110 00001111111 1
Q ss_pred EEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHh
Q 004970 597 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK 631 (721)
Q Consensus 597 ~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~ 631 (721)
..++.+. .+-+++++.|.....|.+...+|.+
T Consensus 194 a~~L~~A---krPvIl~G~G~~~a~a~~~l~~lae 225 (550)
T COG0028 194 AELLAEA---KRPVILAGGGVRRAGASEELRELAE 225 (550)
T ss_pred HHHHHhC---CCCEEEECCCccccccHHHHHHHHH
Confidence 1122221 4568888888877666666666644
No 298
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=67.70 E-value=66 Score=31.82 Aligned_cols=112 Identities=21% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcC-CcEEEEEecCCcccCCCCC--CC
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCE-AGVIYVMTHDSIGLGEDGP--TH 531 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~-~pV~~v~t~~g~~~g~dG~--TH 531 (721)
.|.+++..|-- ...++.|.|.++.-. +|++++ -..|..- ...+...+..+ .|+++++-.++. +|.-+. +.
T Consensus 34 ~~~~~~~~gsm-G~~lpaAiGa~la~~--~~Vv~i~GDG~f~m~-~~el~ta~~~~~~pv~~vV~NN~~-yg~~~~q~~~ 108 (181)
T TIGR03846 34 RPLNFYMLGSM-GLASSIGLGLALATD--RTVIVIDGDGSLLMN-LGVLPTIAAESPKNLILVILDNGA-YGSTGNQPTP 108 (181)
T ss_pred CCCCeeecccc-ccHHHHHHHHHHcCC--CcEEEEEcchHHHhh-hhHHHHHHHhCCCCeEEEEEeCCc-cccccCcCCC
Confidence 46777753311 112345666655422 577765 4555422 22344445556 598777755543 232221 11
Q ss_pred C-Chhhh-HHHhcCCCcEEEe-eCCHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 532 Q-PIEHL-ASFRAMPNILMLR-PADGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 532 q-~~edi-a~lr~iPnl~V~~-P~d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
. ..-|. .+.+++ |+.-.. -.+++|+..+|+ +++ .++|++|-+
T Consensus 109 ~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~li~v 153 (181)
T TIGR03846 109 ASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTFIHV 153 (181)
T ss_pred CCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEEEEE
Confidence 1 01122 233333 455455 688999999997 775 689998865
No 299
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=67.61 E-value=32 Score=37.95 Aligned_cols=106 Identities=8% Similarity=-0.021 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 256 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~ 256 (721)
++.+|+|+++|- .++++.+-|+.|. ..+|.+..|+-..+|-++++++..+=+.. .+.. ..
T Consensus 60 A~~~a~GAs~aG----------------~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~~p~~g-~t~~-eq 119 (352)
T PRK07119 60 AINMVYGAAATG----------------KRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRGGPGLG-NIQP-SQ 119 (352)
T ss_pred HHHHHHHHHhhC----------------CCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccCCCCCC-CCcc-hh
Confidence 456777777653 3689999999998 99999999999999766666654422111 1111 11
Q ss_pred ccHHHHHh-----hCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEee
Q 004970 257 ENVDKRFE-----GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTI 306 (721)
Q Consensus 257 ~~~~~~~~-----a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~k 306 (721)
.|..-..+ .++|-++.+ . |+++.++...+|.+ ...-|+++-..+.-
T Consensus 120 ~D~~~~~~~~ghgd~~~~vl~p---~-~~qEa~d~~~~Af~lAE~~~~PViv~~D~~l 173 (352)
T PRK07119 120 GDYFQAVKGGGHGDYRLIVLAP---S-SVQEMVDLTMLAFDLADKYRNPVMVLGDGVL 173 (352)
T ss_pred HHHHHHHhcCCCCCcceEEEeC---C-CHHHHHHHHHHHHHHHHHhCCCEEEEcchhh
Confidence 12211111 345877777 4 77765554444422 14679988777654
No 300
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=67.10 E-value=26 Score=40.83 Aligned_cols=115 Identities=16% Similarity=0.023 Sum_probs=74.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEE-EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCC-------
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGP------- 529 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~------- 529 (721)
=|++.+ --|++++.+|.|+|...+ +.+|. ++.+-+..+..-+.++-..+.||+++....... .+.+-.
T Consensus 40 i~~v~~-rhE~~A~~mAdgyar~tg--~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~ 116 (539)
T TIGR03393 40 ICWVGC-ANELNAAYAADGYARCKG--AAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGD 116 (539)
T ss_pred CcEecc-CCcccHHHHhhhhhhhcC--ceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCC
Confidence 366666 899999999999998764 46664 677777777777777777899999986322211 000001
Q ss_pred -CCCChhhhHHHhcCCCc-EEEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 530 -THQPIEHLASFRAMPNI-LMLRPAD-GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 530 -THq~~edia~lr~iPnl-~V~~P~d-~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
.+|.. ..+++.+--. .++.|.+ +..+..+++.|+. ..+|++|-+|+.
T Consensus 117 ~~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~D 166 (539)
T TIGR03393 117 GDFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVD 166 (539)
T ss_pred CchHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 12221 2344432211 1225666 7889999999996 468999999875
No 301
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=66.47 E-value=24 Score=41.47 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 256 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~ 256 (721)
++.+|+|+++|- .++++.+-=.+|. ...|.+.+|+-..+|-+++++++-+-+..-++.....
T Consensus 249 A~~~a~GAs~aG----------------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~ 310 (562)
T TIGR03710 249 AINMAIGASYAG----------------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQS 310 (562)
T ss_pred HHHHHHhHHhcC----------------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHH
Confidence 456667776653 3577777777787 8999999999999976666666655433222322222
Q ss_pred ccHHHHHh---hCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeec
Q 004970 257 ENVDKRFE---GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 307 (721)
Q Consensus 257 ~~~~~~~~---a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg 307 (721)
+-+..++. .++|-++.+ . |+++......+|.+ +-.-|+++...+..+
T Consensus 311 D~~~~~~~~hgd~~~ivl~p---~-~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~ 363 (562)
T TIGR03710 311 DLLFALYGGHGEFPRIVLAP---G-SPEECFYLAIEAFNLAEKYQTPVIVLSDQYLA 363 (562)
T ss_pred HHHHHhcCCCCCcCceEEcC---C-CHHHHHHHHHHHHHHHHHhcCCEEEEechHHh
Confidence 22223333 246877776 4 77765554443322 256799887776653
No 302
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=65.63 E-value=1.3e+02 Score=29.03 Aligned_cols=91 Identities=12% Similarity=-0.035 Sum_probs=48.0
Q ss_pred EEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHH
Q 004970 207 TYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAA 286 (721)
Q Consensus 207 vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a 286 (721)
++|..|=|.++ ..-++..|...+. |+++|.-+......+. ......|..++++.+--...++.+...-.+.+.+|
T Consensus 67 ~~~t~GpG~~n---~~~~l~~A~~~~~-Pvl~I~g~~~~~~~~~-~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A 141 (164)
T cd07039 67 CLGSSGPGAIH---LLNGLYDAKRDRA-PVLAIAGQVPTDELGT-DYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRA 141 (164)
T ss_pred EEECCCCcHHH---HHHHHHHHHhcCC-CEEEEecCCcccccCC-CCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHH
Confidence 33333555543 4457888888887 6777764333221111 11112366777877643444552211013345555
Q ss_pred HHHHHhcCCCCEEEEEE
Q 004970 287 IKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 287 l~~a~~~~~~P~lI~~~ 303 (721)
++.+.. ..+|+.|++-
T Consensus 142 ~~~a~~-~~GPV~l~iP 157 (164)
T cd07039 142 IRTAIA-KRGVAVLILP 157 (164)
T ss_pred HHHHhc-CCCCEEEEeC
Confidence 655554 5689998764
No 303
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=65.50 E-value=26 Score=38.40 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=49.9
Q ss_pred ccEEEEch--hHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC-C----ChhhhHHHhcCCCcEEEeeCCHHHH
Q 004970 486 IPYCATFF--VFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-Q----PIEHLASFRAMPNILMLRPADGNET 557 (721)
Q Consensus 486 ~Piv~~~~--~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH-q----~~edia~lr~iPnl~V~~P~d~~e~ 557 (721)
+++++.+. .|.+ ..++.+..++..++||++++-..+++++. +++ + .+.+.+---.+|+++|=- .|..++
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av 234 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAV 234 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEEeC-CCHHHH
Confidence 45555543 4432 23345666788999999999888865442 222 1 123333334677777633 343333
Q ss_pred ----HHHHHHHHHcCCCcEEEEE
Q 004970 558 ----AGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 558 ----~~~l~~a~~~~~~P~~Irl 576 (721)
+.+++.+.. .++|++|-.
T Consensus 235 ~~a~~~A~~~ar~-~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQ-GDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 345555553 578998865
No 304
>PRK12753 transketolase; Reviewed
Probab=64.78 E-value=39 Score=40.61 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCccChhhHHHHHHHHHhcCCCeEEEEEECCCccc--cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHH
Q 004970 213 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKE 289 (721)
Q Consensus 213 DG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~ 289 (721)
-+.|.. ..++.+..++..++ |+++|.-..+++. +++|. ...+|+ ..+++. |+.++.+ . |..++..+++.
T Consensus 434 f~~F~~-r~~~qir~~a~~~l-~V~~v~thdg~~~G~DG~TH-q~iedl-a~lR~iPn~~v~~P---a-D~~E~~~~~~~ 505 (663)
T PRK12753 434 FLMFVE-YARNAARMAALMKA-RQIMVYTHDSIGLGEDGPTH-QPVEQL-ASLRLTPNFSTWRP---C-DQVEAAVAWKL 505 (663)
T ss_pred hHHHHH-HHHHHHHHHHhcCC-CeEEEEeCCCcccCCCCccc-ccHHHH-HHHhcCCCCEEEcc---C-CHHHHHHHHHH
Confidence 346765 89999999999998 6777766665554 44443 223444 356665 8999999 4 88899999998
Q ss_pred HHhcCCCCEEEEEE
Q 004970 290 AKAVTDKPTLIRVT 303 (721)
Q Consensus 290 a~~~~~~P~lI~~~ 303 (721)
+.+..++|+.|...
T Consensus 506 al~~~~gP~~irl~ 519 (663)
T PRK12753 506 AIERHNGPTALILS 519 (663)
T ss_pred HHhcCCCCEEEEec
Confidence 88634789877543
No 305
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=62.93 E-value=26 Score=37.68 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=50.8
Q ss_pred hHHHHHHHhhhcCCcEEEEEecCCcccCCCC---CCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc---CCCc
Q 004970 498 YMRAAIRISALCEAGVIYVMTHDSIGLGEDG---PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRP 571 (721)
Q Consensus 498 r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG---~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P 571 (721)
..++.+..++++++||+|++...+++....- .+-..+.+.+..-.||+++| -=.|..++..+++.|+++ .++|
T Consensus 139 ~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP 217 (300)
T PF00676_consen 139 DFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGP 217 (300)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--
T ss_pred ccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCC
Confidence 3466788889999999999998888753211 11123455555557787775 556677777777777643 4789
Q ss_pred EEEEE
Q 004970 572 SILAL 576 (721)
Q Consensus 572 ~~Irl 576 (721)
++|-.
T Consensus 218 ~lie~ 222 (300)
T PF00676_consen 218 VLIEA 222 (300)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
No 306
>PLN02790 transketolase
Probab=62.60 E-value=60 Score=38.98 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCcc--ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~--i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 296 (721)
..++++..++..+| |+++|+...+++ .+++|.. ..+|+. .+++. |+.++.+ . |..++..+++.+.+..++
T Consensus 431 ~~~~~ir~~al~~l-pV~~v~thdg~~~G~DG~THq-~iedla-~lR~iPnl~V~~P---a-D~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 431 YMRAAMRLSALSEA-GVIYVMTHDSIGLGEDGPTHQ-PIEHLA-SLRAMPNILMLRP---A-DGNETAGAYKVAVTNRKR 503 (654)
T ss_pred HHHHHHHHHHhcCC-CeEEEEECCceeecCCCCCcc-cHHHHH-HhcCCCCcEEEeC---C-CHHHHHHHHHHHHHcCCC
Confidence 67788889999999 677777554444 4455531 223443 56665 8999999 4 889999999988753578
Q ss_pred CEEEEE
Q 004970 297 PTLIRV 302 (721)
Q Consensus 297 P~lI~~ 302 (721)
|+.|..
T Consensus 504 P~~irl 509 (654)
T PLN02790 504 PTVLAL 509 (654)
T ss_pred CEEEEe
Confidence 987743
No 307
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=62.28 E-value=1.4e+02 Score=28.85 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccc-cccc---cc---cccccHHHHHhhCCCeEEEeccCCCC-HHHHHHHHHHHHh
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISI-DGDT---EI---AFTENVDKRFEGLGWHVIWVKNGNTG-YDDIRAAIKEAKA 292 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i-~~~~---~~---~~~~~~~~~~~a~G~~~~~v~dG~~d-~~~l~~al~~a~~ 292 (721)
..-++..|...+. |+++|.-+..... .... .. ...+|...+++.+-=....+.+.. + ++.+.+|++.|..
T Consensus 74 ~~~gl~~A~~~~~-Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~-~i~~~v~~A~~~a~s 151 (162)
T cd07038 74 ALNGIAGAYAEHV-PVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPE-NAAEEIDRVLRTALR 151 (162)
T ss_pred HHHHHHHHHHcCC-CEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHH-HHHHHHHHHHHHHHH
Confidence 4446777777776 5666654332211 1101 00 111245677777653445552222 2 2346666666665
Q ss_pred cCCCCEEEEE
Q 004970 293 VTDKPTLIRV 302 (721)
Q Consensus 293 ~~~~P~lI~~ 302 (721)
.++|+.|++
T Consensus 152 -~~gPV~l~i 160 (162)
T cd07038 152 -ESRPVYIEI 160 (162)
T ss_pred -CCCCEEEEc
Confidence 568999875
No 308
>PRK12754 transketolase; Reviewed
Probab=61.18 E-value=59 Score=39.03 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCccChhhHHHHHHHHHhcCCCeEEEEEECCCccc--cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHH
Q 004970 213 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKE 289 (721)
Q Consensus 213 DG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~ 289 (721)
=..|.. ..++++..++..++ |+++|....+++. +++|. ...+|+. .+++. |+.++++ . |..++..+++.
T Consensus 434 f~~F~~-r~~~qir~~a~~~l-~V~~v~th~gi~~G~DG~TH-q~iEdla-~lR~iPn~~V~~P---a-D~~E~~~~~~~ 505 (663)
T PRK12754 434 FLMFVE-YARNAVRMAALMKQ-RQVMVYTHDSIGLGEDGPTH-QPVEQVA-SLRVTPNMSTWRP---C-DQVESAVAWKY 505 (663)
T ss_pred eHHHHH-HHHHHHHHHHHcCC-CeEEEEECCccccCCCCCCc-ccHHHHH-HHhcCCCcEEecC---C-CHHHHHHHHHH
Confidence 346665 88999999998998 6777777776655 33332 2234444 56665 8999999 4 88899999998
Q ss_pred HHhcCCCCEEEEE
Q 004970 290 AKAVTDKPTLIRV 302 (721)
Q Consensus 290 a~~~~~~P~lI~~ 302 (721)
+.+..++|+.|.+
T Consensus 506 a~~~~~gP~yirl 518 (663)
T PRK12754 506 GVERQDGPTALIL 518 (663)
T ss_pred HHhCCCCCEEEEe
Confidence 8873478997644
No 309
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=59.33 E-value=90 Score=30.73 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=57.9
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEE--chhHHHhHHHHHHHhhhcC-CcEEEE-EecCCcccCCCCCCCC
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCE-AGVIYV-MTHDSIGLGEDGPTHQ 532 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~--~~~F~~r~~dqir~~a~~~-~pV~~v-~t~~g~~~g~dG~THq 532 (721)
.|.+++..|.- ...++.|.|+++... ++++++ -..|..- ...+...+..+ .|++++ +...+++. .+..+.
T Consensus 34 ~~~~~~~~g~m-G~~lp~AiGaala~~--~~vv~i~GDG~f~m~-~~el~ta~~~~~~~l~vvV~NN~~~~~--~~~~~~ 107 (179)
T cd03372 34 RPLNFYMLGSM-GLASSIGLGLALAQP--RKVIVIDGDGSLLMN-LGALATIAAEKPKNLIIVVLDNGAYGS--TGNQPT 107 (179)
T ss_pred cccccccccch-hhHHHHHHHHHhcCC--CcEEEEECCcHHHhC-HHHHHHHHHcCCCCEEEEEEcCccccc--cCCCCC
Confidence 46677643221 122336777776653 566665 4555422 22344444444 455555 44444442 222111
Q ss_pred ----ChhhhHHHhcCCCcEEEeeC-CHHHHHHHHHHHHHcCCCcEEEEE
Q 004970 533 ----PIEHLASFRAMPNILMLRPA-DGNETAGAYKVAVANRKRPSILAL 576 (721)
Q Consensus 533 ----~~edia~lr~iPnl~V~~P~-d~~e~~~~l~~a~~~~~~P~~Irl 576 (721)
..+-..+.+++ |+..+... +.+|+..+++.+. ++|.+|-.
T Consensus 108 ~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 108 HAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 11112233333 55555666 9999999999987 68988765
No 310
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=57.06 E-value=65 Score=34.43 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=50.7
Q ss_pred ccEEEE--chhHHHh-HHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCC--ChhhhHHHh---cCCCcEEEeeCCHHHH
Q 004970 486 IPYCAT--FFVFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASFR---AMPNILMLRPADGNET 557 (721)
Q Consensus 486 ~Piv~~--~~~F~~r-~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq--~~edia~lr---~iPnl~V~~P~d~~e~ 557 (721)
++++.+ -..|.+- .++.+..++..++||++++...+++.. .++.. +..|++-+. .+|++.| .=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~--~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAIS--TPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeecc--CCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 344444 4456443 345677778899999999988876432 22221 223333322 4555443 22356666
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 004970 558 AGAYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 558 ~~~l~~a~~---~~~~P~~Irl 576 (721)
...++.+++ ..++|++|-+
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 666666663 3478998865
No 311
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=56.73 E-value=19 Score=40.65 Aligned_cols=63 Identities=10% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHh-C-CCCc-ccCccccchhHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA-G-YDSV-QVTTGPLGQGMANAVGLAL 186 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~-G-~~gi-e~~~G~lG~gl~~AvG~Al 186 (721)
.+....++..|... ++ ++..++.|.|....+...++... . ..-+ ....|+||+|||.|+|+++
T Consensus 366 ~i~p~~~~~~l~~~---lp-------~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 366 PLSELSLARALSQL---LP-------EGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CccHHHHHHHHHHh---CC-------CCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 35566666666655 32 45677789999887765554332 1 1011 1246899999999999985
No 312
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=56.72 E-value=63 Score=34.51 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=86.3
Q ss_pred CCCeEEEcCCcchHHHHHHHHHhCCCCcccCccccchh-HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccCh
Q 004970 140 NRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQG-MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 218 (721)
Q Consensus 140 ~~D~~V~s~Gh~~~~~y~~l~l~G~~gie~~~G~lG~g-l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~e 218 (721)
+.|.+|++.--.... .......-||---+..|..=|. ++.|.|+|++-+ .-.+++=++|..
T Consensus 24 ~~diVvl~ADl~~St-~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk-----------------~Pfv~tfa~F~s 85 (312)
T COG3958 24 NSDIVVLDADLSSST-KTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGK-----------------KPFVSTFAAFLS 85 (312)
T ss_pred CCCEEEEeccccccc-chhHHHHhCchhheecchHHHHHHHHHHHHHhcCC-----------------CceeechHHHHH
Confidence 578888754322211 1111112222112344555553 577888887544 235567789998
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEECCCcccc--ccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCC
Q 004970 219 GIANEASSLAGHLGLGKLIAFYDDNHISID--GDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTD 295 (721)
Q Consensus 219 G~~~Eal~~a~~~~L~~li~IvddN~~~i~--~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~ 295 (721)
+-.||=+...-.+.--|+-+|.-+-+++.. +++ ....+|++ +++++ ...++.+ . |.-+..+.+..+.+ .+
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~s-Hq~~EDia-imR~lpn~~V~~P---~-D~v~~~~i~~~~~~-~~ 158 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSS-HQALEDIA-IMRGLPNMTVIAP---A-DAVETRAILDQIAD-YK 158 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCcc-chhHHHHH-HHhcCCCceEEcc---C-cHHHHHHHHHHHHh-cC
Confidence 889998876665443378888888777543 322 22335554 67766 5677766 4 77788888888887 78
Q ss_pred CCEEEEEEEeecc
Q 004970 296 KPTLIRVTTTIGF 308 (721)
Q Consensus 296 ~P~lI~~~T~kg~ 308 (721)
+|+-+ ++.|++
T Consensus 159 GP~Y~--Rl~R~~ 169 (312)
T COG3958 159 GPVYM--RLGRGK 169 (312)
T ss_pred CCEEE--EecCCC
Confidence 99866 665543
No 313
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=55.80 E-value=77 Score=35.14 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=45.1
Q ss_pred hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH-HHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEE
Q 004970 498 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSI 573 (721)
Q Consensus 498 r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~ 573 (721)
..++.+..++.+++||+|++...+++.+.--.-+....+++ ....+|+++| -=-|..++..+++.+++ + ++|++
T Consensus 176 ~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~-~gP~l 253 (362)
T PLN02269 176 QLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALS-NGPIV 253 (362)
T ss_pred HHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHh-CCCEE
Confidence 35677777889999999999888876442111112222331 1135777766 33344444444555443 3 78999
Q ss_pred EEE
Q 004970 574 LAL 576 (721)
Q Consensus 574 Irl 576 (721)
|-.
T Consensus 254 Ie~ 256 (362)
T PLN02269 254 LEM 256 (362)
T ss_pred EEE
Confidence 975
No 314
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=54.93 E-value=52 Score=38.72 Aligned_cols=78 Identities=27% Similarity=0.286 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCc--cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 296 (721)
...-|+.+++-.++ |+++|+-...+ +-|++|. .+-+....+++. ++.++++. |..+...+.+.|.++.++
T Consensus 440 Y~r~AiRlaALm~l-~~~~V~THDSIgvGEDGPTH--qPiEqLa~LRaiPN~~V~RPa----D~~Et~~aw~~Al~~~~g 512 (663)
T COG0021 440 YARPAVRLAALMGL-PVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAIPNLSVIRPA----DANETAAAWKYALERKDG 512 (663)
T ss_pred hhhHHHHHHHhcCC-CeEEEEecCceecCCCCCCC--CcHHHHHHhhccCCceeEecC----ChHHHHHHHHHHHhcCCC
Confidence 44558999999999 67777776655 4566664 122233446664 99999994 555777888888875689
Q ss_pred CEEEEEEE
Q 004970 297 PTLIRVTT 304 (721)
Q Consensus 297 P~lI~~~T 304 (721)
|++|...-
T Consensus 513 Pt~LiltR 520 (663)
T COG0021 513 PTALILTR 520 (663)
T ss_pred CeEEEEec
Confidence 99986653
No 315
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=51.52 E-value=49 Score=37.65 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=73.0
Q ss_pred CCCccccCCchHHHHHHHHHHHHh-cCCCCccEEE--EchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCC
Q 004970 457 PEERNVRFGVREHGMGAICNGIAL-HSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP 533 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~-~G~~~~Piv~--~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~ 533 (721)
..-||+++ =.||+++=.|..++. .| +|-++ +=.+=+.-+..-+.|+-++..|+++++..+.-..-.-|. -|-
T Consensus 50 lGIk~I~~-RnEqaA~yAA~A~gyLt~---kpGV~lVvsGPGl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGa-fQe 124 (571)
T KOG1185|consen 50 LGIKFIGT-RNEQAAVYAASAYGYLTG---KPGVLLVVSGPGLTHALAGVANAQMNCWPLLLIGGSASTLLENRGA-FQE 124 (571)
T ss_pred cCCeEeec-ccHHHHHHHHHHhhhhcC---CCeEEEEecCChHHHHHHHhhhhhhccCcEEEEecccchhhhcccc-ccc
Confidence 56678887 679998877777764 55 56664 334445555556666667778999887332222221222 356
Q ss_pred hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 534 IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 534 ~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+.++.++|..=. .+.+|.+..+....++.|++ -+++|+|+-+|-.
T Consensus 125 ~dQvel~rp~~K-~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 125 LDQVELFRPLCK-FVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred ccHHhhhhhhhh-hccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 777777774322 35577776766655555554 3688999977643
No 316
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=50.48 E-value=90 Score=33.79 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=50.6
Q ss_pred ccEEEEc--hhHHHh-HHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--C---ChhhhHHHhcCCCcEEEeeCCHHHH
Q 004970 486 IPYCATF--FVFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q---PIEHLASFRAMPNILMLRPADGNET 557 (721)
Q Consensus 486 ~Piv~~~--~~F~~r-~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q---~~edia~lr~iPnl~V~~P~d~~e~ 557 (721)
+++++++ ..|.+- .++.+..++..++||++++...+++.. .++. . .+.+++---.+|+++| .=.|..++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s--~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMG--TSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcccc--CCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 4555554 446432 345566678899999999988866532 2211 1 2333343346777654 33355555
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 004970 558 AGAYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 558 ~~~l~~a~~---~~~~P~~Irl 576 (721)
..+++.|++ ..++|++|-+
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 555555553 3578999865
No 317
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=49.57 E-value=70 Score=29.07 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEe-ccCCCCHHHHHHHHHHHHhcCCCCE
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-KNGNTGYDDIRAAIKEAKAVTDKPT 298 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v-~dG~~d~~~l~~al~~a~~~~~~P~ 298 (721)
..-|.+..++..|.. .| +|+- -.-.. .+.-...++.+..++.|+.|+.+ +++..--.+-.++|.++.+...+|+
T Consensus 15 ~~~~d~~~la~~Gfk--tV-InlR-pd~E~-~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pv 89 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFK--TV-INLR-PDGEE-PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPV 89 (110)
T ss_dssp --HHHHHHHHHCT----EE-EE-S--TTST-TT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSE
T ss_pred CCHHHHHHHHHCCCc--EE-EECC-CCCCC-CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 556777888888763 22 3322 10000 01113345778899999877643 2433022455566666666568899
Q ss_pred EEEEEE
Q 004970 299 LIRVTT 304 (721)
Q Consensus 299 lI~~~T 304 (721)
++||+|
T Consensus 90 l~hC~s 95 (110)
T PF04273_consen 90 LAHCRS 95 (110)
T ss_dssp EEE-SC
T ss_pred EEECCC
Confidence 999987
No 318
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=46.97 E-value=80 Score=35.15 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFT 256 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~ 256 (721)
++.+|+|+++|- .++++.+.=++|. ...|.+.+++-..+|-+++.++.-+-+..-++.....
T Consensus 59 A~~~a~GAs~aG----------------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~ 120 (375)
T PRK09627 59 GISVALGASMSG----------------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQG 120 (375)
T ss_pred HHHHHHHHHhhC----------------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchH
Confidence 456677777653 3678888777787 8899999999999965555554333333323322112
Q ss_pred ccHHHHHh---hCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeec
Q 004970 257 ENVDKRFE---GLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIG 307 (721)
Q Consensus 257 ~~~~~~~~---a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg 307 (721)
+-...++. .|+|-++.+ . |+++......+|.+ +-.-|+++...+.-+
T Consensus 121 D~~~~~~~~hgd~~~ivl~p---~-~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ls 173 (375)
T PRK09627 121 DVNQAKNPTHGDFKSIALAP---G-SLEEAYTETVRAFNLAERFMTPVFLLLDETVG 173 (375)
T ss_pred HHHHHhcCCCCCcCcEEEeC---C-CHHHHHHHHHHHHHHHHHHcCceEEecchHHh
Confidence 12233333 357766655 4 77765544433322 256799887776443
No 319
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=45.12 E-value=89 Score=35.50 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=47.4
Q ss_pred ccEEEEchh--HHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh---HHHhcCCCcEEEeeCCHHHHH-
Q 004970 486 IPYCATFFV--FTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL---ASFRAMPNILMLRPADGNETA- 558 (721)
Q Consensus 486 ~Piv~~~~~--F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi---a~lr~iPnl~V~~P~d~~e~~- 558 (721)
.++++.+.+ |.. ..++.+..++..++||+|++-..+++.|.-=..+....++ +---.+|++.| -=.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~ 302 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVRE 302 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHH
Confidence 345555443 332 2356677788999999999987775433200001112233 33335666654 223333333
Q ss_pred ---HHHHHHHHcCCCcEEEEE
Q 004970 559 ---GAYKVAVANRKRPSILAL 576 (721)
Q Consensus 559 ---~~l~~a~~~~~~P~~Irl 576 (721)
.+++.+.. .++|++|-.
T Consensus 303 a~~~A~~~Ar~-g~gP~LIe~ 322 (433)
T PLN02374 303 VAKEAIERARR-GEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHH-cCCCEEEEE
Confidence 34455553 478998864
No 320
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=43.03 E-value=1.6e+02 Score=32.89 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc-cc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AF 255 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-~~ 255 (721)
++++|+|+++|- .++++..-=++|. ...|.+..|+-.+++.++.++ |+-.- ++... ..
T Consensus 61 A~~~aiGAs~aG----------------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~--~R~~p-~~~~~~~~ 119 (390)
T PRK08366 61 AMAACIGASAAG----------------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV--NRAMA-PPWSVWDD 119 (390)
T ss_pred HHHHHHHHHhhC----------------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe--ccCCC-CCCCCcch
Confidence 466777777663 3688888888888 899999999999995333333 33211 11111 11
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHHH----HHHHHHhcCCCCEEEEEEE
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIRA----AIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~----al~~a~~~~~~P~lI~~~T 304 (721)
..|+. ..+.-||-++.. . |+++... |++-|-+ -.-|+++-..+
T Consensus 120 q~D~~-~~~d~g~i~~~~---~-~~QEa~d~t~~Af~lAE~-~~~PViv~~Dg 166 (390)
T PRK08366 120 QTDSL-AQRDTGWMQFYA---E-NNQEVYDGVLMAFKVAET-VNLPAMVVESA 166 (390)
T ss_pred hhHHH-HHhhcCEEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEecC
Confidence 23333 223448866665 4 6665444 4444433 56798886654
No 321
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.09 E-value=1e+02 Score=25.87 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCEEEEEeChh-HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccc
Q 004970 608 PDVILIGTGSE-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 672 (721)
Q Consensus 608 ~dvtIva~G~~-v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~ 672 (721)
.++.|+..+.. ...|++.++.|++.|+++++ |.+. +.+..+... ..+.|.+.++++.+.
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~----a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIRE----AQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHH----HHHcCCCEEEEECcc
Confidence 36778887764 47899999999999999977 4444 456654321 123455655666654
No 322
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=40.78 E-value=76 Score=34.46 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHh--cCCCCccEEE-EchhHHH---hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCC-ChhhhH-HHh-
Q 004970 471 MGAICNGIAL--HSPGLIPYCA-TFFVFTD---YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-PIEHLA-SFR- 541 (721)
Q Consensus 471 ~vg~aaGlA~--~G~~~~Piv~-~~~~F~~---r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq-~~edia-~lr- 541 (721)
=+|...++|. .+. .-++. .|.+=.. ..|+.+.+++++++|||||+-...+|. |.+|. ..-+-. +.|
T Consensus 172 PLGaGia~A~kY~~~--~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGM---GTs~~Rasa~teyykRG 246 (394)
T KOG0225|consen 172 PLGAGIAFAQKYNRE--DAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGM---GTSAERASASTEYYKRG 246 (394)
T ss_pred CccccHHHHHHhccC--CceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCcc---CcchhhhhcChHHHhcc
Confidence 3444445554 332 23443 3554432 456667778999999999997777754 44442 222222 333
Q ss_pred -cCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 004970 542 -AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 542 -~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl 576 (721)
-|||+.| ---|.--+..+.++|.. ..++|.++-+
T Consensus 247 ~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~ 284 (394)
T KOG0225|consen 247 DYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEM 284 (394)
T ss_pred CCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5899876 12222233344444432 2478988854
No 323
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=38.42 E-value=24 Score=31.94 Aligned_cols=35 Identities=40% Similarity=0.619 Sum_probs=24.1
Q ss_pred CCCEEEEEeChhHH-HHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
.+|++||++|.... .--+..+.|++.||.+++-|-
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 58999999998652 344566778899998888763
No 324
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=37.65 E-value=1.1e+02 Score=28.50 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=44.8
Q ss_pred CcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHH
Q 004970 204 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDI 283 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l 283 (721)
.++.++++.||.-+ +...+.+..+...+....++-+....- ....+..+.+.-|..++.+ + . +.++|
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~---------~~~~l~~la~~tgG~~~~~-~-~-~~~~l 165 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSD---------ANEFLQRLAEATGGRYFHV-D-N-DPEDL 165 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT----------EHHHHHHHHHHTEEEEEEE---S-SSHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCcc---------HHHHHHHHHHhcCCEEEEe-c-C-CHHHH
Confidence 56789999999766 555677877777765322222211110 1234666777788888887 3 2 56888
Q ss_pred HHHHHH
Q 004970 284 RAAIKE 289 (721)
Q Consensus 284 ~~al~~ 289 (721)
.++|++
T Consensus 166 ~~~~~~ 171 (172)
T PF13519_consen 166 DDAFQQ 171 (172)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888875
No 325
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=37.54 E-value=1.1e+02 Score=31.79 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=38.1
Q ss_pred eEEEEEECCCccc-cccc--cccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISI-DGDT--EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i-~~~~--~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+.+|++|..|.- -.+- .......+.+.|+.+||++....| - +..++.+++++..+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~n-l-t~~~~~~~l~~f~~ 68 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNN-L-TAEEILEELKEFAS 68 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHHHHHHh
Confidence 4677777776643 1111 122345688899999999988754 3 67889999988764
No 326
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=37.16 E-value=1.5e+02 Score=25.27 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=38.5
Q ss_pred CEEEEEeCh---h-HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcc
Q 004970 609 DVILIGTGS---E-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEA 671 (721)
Q Consensus 609 dvtIva~G~---~-v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~ 671 (721)
+|.|+..|. . ...|.+.++.|++.|+.+.+-+ .-..+..+... ....|.+.++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~----a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKY----ADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHH----HHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHH----HhhcCCeEEEEECc
Confidence 578888888 4 4689999999999999988876 44556654322 12235565555543
No 327
>PRK10329 glutaredoxin-like protein; Provisional
Probab=36.40 E-value=1.4e+02 Score=25.31 Aligned_cols=33 Identities=3% Similarity=0.102 Sum_probs=25.6
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 610 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 610 vtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
|+|.+. ...+.|..+.+.|++.||..+.||+..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC
Confidence 455443 444778888889999999999999975
No 328
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=35.91 E-value=2.6e+02 Score=28.64 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeE-EEEEECCCccccccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISIDGDTEIAF 255 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~l-i~IvddN~~~i~~~~~~~~ 255 (721)
.++..+|+|.|.+.. ..+++||+=|-.-.. ..-++| ...++... =||+-+ .
T Consensus 54 ~~~ttiaLaaAAr~T------------gGR~vCIvp~~~~~~-~~~~~l---~~~~~~~~vEfvvg~------------~ 105 (218)
T PF07279_consen 54 AISTTIALAAAARQT------------GGRHVCIVPDEQSLS-EYKKAL---GEAGLSDVVEFVVGE------------A 105 (218)
T ss_pred chHhHHHHHHHHHhc------------CCeEEEEcCChhhHH-HHHHHH---hhccccccceEEecC------------C
Confidence 456678888888754 568999997754321 223333 33343222 222211 1
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHH-HHHHHHHhcCCCCEEEEEEE
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIR-AAIKEAKAVTDKPTLIRVTT 304 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~-~al~~a~~~~~~P~lI~~~T 304 (721)
.+++...++ |.+.+.| |++ .++.. +.|+.++- ..+=.+|.++-
T Consensus 106 ~e~~~~~~~--~iDF~vV-Dc~--~~d~~~~vl~~~~~-~~~GaVVV~~N 149 (218)
T PF07279_consen 106 PEEVMPGLK--GIDFVVV-DCK--REDFAARVLRAAKL-SPRGAVVVCYN 149 (218)
T ss_pred HHHHHhhcc--CCCEEEE-eCC--chhHHHHHHHHhcc-CCCceEEEEec
Confidence 123444454 5666666 755 45555 77776654 33335555554
No 329
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=35.56 E-value=1.3e+02 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 607 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 607 g~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..+|+|++.| +....|.+|.+.|++.|+..+.+|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3689999988 467888999999999999999999754
No 330
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=34.97 E-value=1.4e+02 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=38.5
Q ss_pred eEEEEEECCCccccccc--cccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~--~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+.+|++|..|.-..+- .....+.+.+.|+.+||++....| - +..++.+++++..+
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~d-l-t~~em~~~l~~~~~ 66 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNN-L-TAEEMLEELKEFAE 66 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHh
Confidence 47778888777421111 112345688899999999988755 3 67899999987754
No 331
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=34.81 E-value=2.9e+02 Score=32.37 Aligned_cols=99 Identities=26% Similarity=0.263 Sum_probs=60.7
Q ss_pred CCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHH-------HhhCCCeEEEe--
Q 004970 203 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKR-------FEGLGWHVIWV-- 273 (721)
Q Consensus 203 ~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~-------~~a~G~~~~~v-- 273 (721)
.|=.|.++-+|-+.+ -++.|++..|...+. |+++-+|- |+++- ...+.+..- .+.+|-++-.+
T Consensus 225 tDIvVLVVAadDGVm-pQT~EaIkhAk~A~V-piVvAinK----iDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVM-PQTLEAIKHAKSANV-PIVVAINK----IDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccEEEEEEEccCCcc-HhHHHHHHHHHhcCC-CEEEEEec----cCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 366777777877776 478999999999998 45554442 33321 111122221 44555444322
Q ss_pred --ccCCCCHHHHHHHHHHH------HhcCCCC---EEEEEEEeeccCC
Q 004970 274 --KNGNTGYDDIRAAIKEA------KAVTDKP---TLIRVTTTIGFGS 310 (721)
Q Consensus 274 --~dG~~d~~~l~~al~~a------~~~~~~P---~lI~~~T~kg~G~ 310 (721)
.-|. |++.|.+|+-.- ++..++| .+||..+.||.|.
T Consensus 297 SAl~g~-nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 297 SALTGE-NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred ecccCC-ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccc
Confidence 2366 899998886422 2223455 4999999999985
No 332
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=33.07 E-value=1.1e+02 Score=33.40 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=44.8
Q ss_pred hHHHHHHHhhhcCCc-EEEEEecCCcccCCCCCCCC-Chhhh-HHHhcCCCcEEEee---CCHHHHHHHHHHHHHcCCCc
Q 004970 498 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRP---ADGNETAGAYKVAVANRKRP 571 (721)
Q Consensus 498 r~~dqir~~a~~~~p-V~~v~t~~g~~~g~dG~THq-~~edi-a~lr~iPnl~V~~P---~d~~e~~~~l~~a~~~~~~P 571 (721)
..++.+..++..++. ++++. |.=...-||.|-- ..+|+ .-+++. |+.|+.- -|.+++..+++.+-...+.|
T Consensus 159 ~~~EA~~~A~~~~L~nLi~i~--D~N~~q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAASLAGHYKLDNLIVIY--DSNGIQIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHHHHHHHTT-TTEEEEE--EEESEETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHHHHHHHhCCCCEEEEE--ecCCcccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 567777777767766 55554 3333355777752 22343 335555 8888887 45555666666666545899
Q ss_pred EEEEE
Q 004970 572 SILAL 576 (721)
Q Consensus 572 ~~Irl 576 (721)
++|..
T Consensus 236 ~~Ii~ 240 (332)
T PF00456_consen 236 TVIIA 240 (332)
T ss_dssp EEEEE
T ss_pred ceeec
Confidence 99986
No 333
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.51 E-value=1.6e+02 Score=26.78 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=39.0
Q ss_pred CCEEEEEeC--hh-HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccc
Q 004970 608 PDVILIGTG--SE-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 672 (721)
Q Consensus 608 ~dvtIva~G--~~-v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~ 672 (721)
.++.|+..+ .. ...|++.++.|++.|+.+++- .. +.+..+... ..+.+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kqlk~----A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRRYAR----QDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHHHHH----hHhcCCCEEEEECcC
Confidence 688999988 54 468899999999999998883 33 566654321 123455555655543
No 334
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=31.91 E-value=3e+02 Score=32.76 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 004970 276 GNTGYDDIRAAIKEAKAVTDKPTLIRVTTT 305 (721)
Q Consensus 276 G~~d~~~l~~al~~a~~~~~~P~lI~~~T~ 305 (721)
|..|+++|.+++++.++ .+.|.+..|-|.
T Consensus 258 ~rmd~~~L~~~I~~~~~-~g~p~~~VVata 286 (608)
T TIGR03811 258 YRMDINELEKIIRKLAA-EKTPILGVVGVV 286 (608)
T ss_pred CcCCHHHHHHHHHHHHh-cCCCeEEEEEEc
Confidence 33589999999998877 677887666664
No 335
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=31.38 E-value=37 Score=31.11 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=26.7
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
..+++||++|... ..--+..+.|+++||.++|.|-
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 4789999999954 2333556778899999998864
No 336
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=30.71 E-value=5.7e+02 Score=25.70 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=59.5
Q ss_pred cccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh--HHH-HHHHHHhcCCCeEEEEEECCCcccc
Q 004970 172 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--ANE-ASSLAGHLGLGKLIAFYDDNHISID 248 (721)
Q Consensus 172 G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~--~~E-al~~a~~~~L~~li~IvddN~~~i~ 248 (721)
|-.|.+-.-|+|+|+-. ..+ +.+ .+.+|+.++-||..+.|. -.+ |...|...+++..+|-+-..
T Consensus 87 g~ag~~TadAi~~av~r--l~~--~~~----a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~----- 153 (191)
T cd01455 87 CWSGDHTVEATEFAIKE--LAA--KED----FDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL----- 153 (191)
T ss_pred CccCccHHHHHHHHHHH--HHh--cCc----CCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC-----
Confidence 55566555666666532 210 001 257899999999975443 344 46788889885444443221
Q ss_pred ccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 249 GDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
..+.+..+.+.-|-+++++ . |..+|.+.+++...
T Consensus 154 ------d~~~l~~iA~~tgG~~F~A---~-d~~~L~~iy~~I~~ 187 (191)
T cd01455 154 ------SDEADQLQRELPAGKAFVC---M-DTSELPHIMQQIFT 187 (191)
T ss_pred ------CHHHHHHHHhCCCCcEEEe---C-CHHHHHHHHHHHHH
Confidence 1223445566667899998 3 77788877776643
No 337
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=30.70 E-value=3e+02 Score=30.94 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc-cc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AF 255 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-~~ 255 (721)
++.+++|++++- .++++.+-=.++. ...|.+..++-.++|-++++++.- .. + .... ..
T Consensus 68 A~~~~~GAs~aG----------------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~-~~-~-~~~i~~d 126 (407)
T PRK09622 68 AMSACVGAAAAG----------------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRA-LA-A-PLNVNGD 126 (407)
T ss_pred HHHHHHHHHhhC----------------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccc-cC-C-CcCCCch
Confidence 456777777654 3577777777777 899999999999996444443332 21 1 1111 11
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cC--CCCEEEEEEEe
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VT--DKPTLIRVTTT 305 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~--~~P~lI~~~T~ 305 (721)
..|+.. .+.-||-++.+ . |+.+.++...+|.+ .. .-|+++-..+.
T Consensus 127 ~~D~~~-~r~~g~ivl~p---~-s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~ 176 (407)
T PRK09622 127 HSDMYL-SRDSGWISLCT---C-NPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF 176 (407)
T ss_pred HHHHHH-HhcCCeEEEeC---C-CHHHHHHHHHHHHHHHHHhccCCCEEEEechh
Confidence 223332 34558888777 4 77776555444432 12 67888866655
No 338
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=30.38 E-value=1.8e+02 Score=29.40 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=68.9
Q ss_pred cccCccccchhHHHHHHHHHHHHHhh--hhcC--------C----CCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcC
Q 004970 167 VQVTTGPLGQGMANAVGLALAEKHLA--ARYN--------K----PDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 232 (721)
Q Consensus 167 ie~~~G~lG~gl~~AvG~AlA~~~~~--~~~~--------~----~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~ 232 (721)
+++-.|+-=-|+|.|.-+|.+.. .. -.|+ . .+.. .....|+++=|=-...|...|++......+
T Consensus 62 ~d~v~G~a~ggiP~A~~~a~~l~-~~~~~~~~Rke~K~hG~~~~ieG~~-~~G~kVvvVEDViTTG~Si~eai~~l~~~G 139 (201)
T COG0461 62 FDVVAGPALGGIPLAAATALALA-HLPPMAYVRKEAKDHGTGGLIEGGE-VKGEKVVVVEDVITTGGSILEAVEALREAG 139 (201)
T ss_pred CcEEEeccccchHHHHHHHHHhc-cCCcEEEEeceeccCCCcceeEecC-CCCCEEEEEEecccCCHhHHHHHHHHHHcC
Confidence 44456666667888877776652 10 0011 0 1112 245667888999999999999999999998
Q ss_pred CCe--EEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHH
Q 004970 233 LGK--LIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE 289 (721)
Q Consensus 233 L~~--li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~ 289 (721)
... +++++|.. +-..+.++.+|++++.+ .++.++...+.+
T Consensus 140 ~~V~gv~~ivDR~-------------~~~~~~~~~~g~~~~sl----~tl~dl~~~~~~ 181 (201)
T COG0461 140 AEVVGVAVIVDRQ-------------SGAKEVLKEYGVKLVSL----VTLSDLLEVLYE 181 (201)
T ss_pred CeEEEEEEEEecc-------------hhHHHHHHhcCCceEEE----eeHHHHHHHHHh
Confidence 754 44444433 23456788999999998 378888776554
No 339
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.51 E-value=7.5e+02 Score=26.70 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=52.1
Q ss_pred CcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCC-CeEEEeccCCCCHHH
Q 004970 204 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLG-WHVIWVKNGNTGYDD 282 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G-~~~~~v~dG~~d~~~ 282 (721)
.+.++.+.|-|+=-. -.=|+++|.+. ..++++|-|..+.. +..+..+..| .++..| |=. |.++
T Consensus 37 ~g~~vLITGgg~GlG--r~ialefa~rg---~~~vl~Din~~~~~---------etv~~~~~~g~~~~y~c-dis-~~ee 100 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLG--RLIALEFAKRG---AKLVLWDINKQGNE---------ETVKEIRKIGEAKAYTC-DIS-DREE 100 (300)
T ss_pred cCCEEEEeCCCchHH--HHHHHHHHHhC---CeEEEEeccccchH---------HHHHHHHhcCceeEEEe-cCC-CHHH
Confidence 567888998887541 12245555544 36777887754432 2334444334 455566 766 9999
Q ss_pred HHHHHHHHHhcCCCCEEEEEE
Q 004970 283 IRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 283 l~~al~~a~~~~~~P~lI~~~ 303 (721)
+++..++.++ .-+|+-|.+.
T Consensus 101 i~~~a~~Vk~-e~G~V~ILVN 120 (300)
T KOG1201|consen 101 IYRLAKKVKK-EVGDVDILVN 120 (300)
T ss_pred HHHHHHHHHH-hcCCceEEEe
Confidence 9999998887 5566655555
No 340
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=29.42 E-value=84 Score=30.47 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.1
Q ss_pred CCCEEEEEeChhHHHHHHHHHHHHhCCCceEEE
Q 004970 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVV 639 (721)
Q Consensus 607 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI 639 (721)
+..+.++++|-.+...+..|+.|+++|.+|.+=
T Consensus 57 ~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~q 89 (155)
T PF12500_consen 57 GERVLVLGTGEFMYLPLLLAEELEQAGADVRYQ 89 (155)
T ss_pred CCcEEEEccchHHHHHHHHHHHHHhcCCceEEe
Confidence 578999999999999999999999999766553
No 341
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=29.31 E-value=2.4e+02 Score=31.64 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc-c
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-F 255 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~-~ 255 (721)
++++++|++++- .++++..-=.++. ...|.|..++-.++| +++++ -|+ ++..+.... .
T Consensus 62 A~~~~~GAs~aG----------------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP-~V~vv-~~R-~~~~p~~i~~d 120 (394)
T PRK08367 62 AISACVGASAAG----------------VRTFTATASQGLA--LMHEVLFIAAGMRLP-IVMAI-GNR-ALSAPINIWND 120 (394)
T ss_pred HHHHHHHHHhhC----------------CCeEeeeccchHH--HHhhHHHHHHHccCC-EEEEE-CCC-CCCCCCCcCcc
Confidence 456677777653 3577777777777 899999999999995 44443 222 222232221 1
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHH----Hh-cCCCCEEEEEEEe
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEA----KA-VTDKPTLIRVTTT 305 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~-~~~~P~lI~~~T~ 305 (721)
..|+. .-+..||-.+.. . |+++..+....| .+ +-.-|+++-..+.
T Consensus 121 ~~D~~-~~rd~g~~~~~a---~-~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 121 WQDTI-SQRDTGWMQFYA---E-NNQEALDLILIAFKVAEDERVLLPAMVGFDAF 170 (394)
T ss_pred hHHHH-hccccCeEEEeC---C-CHHHHHHHHHHHHHHHHHhCcCCCEEEEechh
Confidence 12322 345678887766 4 666644433333 32 1225988876654
No 342
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=28.68 E-value=2.8e+02 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=29.6
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
.+|+|.+. +..+.|.+|.+.|.+.|+..+++|+..
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC
Confidence 57888887 566788889999999999999999874
No 343
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=28.07 E-value=5.5e+02 Score=25.15 Aligned_cols=71 Identities=4% Similarity=-0.072 Sum_probs=45.9
Q ss_pred CcEEEEEECCCccChh-hHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHH
Q 004970 204 DHYTYVILGDGCQMEG-IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDD 282 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG-~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~ 282 (721)
.++++++++||+-... ...+....+...++...++=+..+ .+-+.++.++-|-.++.+ . |.++
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~---~-~~~~ 170 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVI---L-DETH 170 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEee---C-CHHH
Confidence 4568888999876532 334566677777764333333211 123677888888899988 4 7888
Q ss_pred HHHHHHHH
Q 004970 283 IRAAIKEA 290 (721)
Q Consensus 283 l~~al~~a 290 (721)
|.+.+.++
T Consensus 171 l~~~~~~~ 178 (183)
T cd01453 171 LKELLLEH 178 (183)
T ss_pred HHHHHHhc
Confidence 88877764
No 344
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=27.44 E-value=43 Score=30.29 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=26.2
Q ss_pred CCEEEEEeChhH-HHHHHHHHHHHhCCCceEEEecC
Q 004970 608 PDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSFV 642 (721)
Q Consensus 608 ~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~VI~~~ 642 (721)
+++.||++|... ..--+..+.|++.||.++|-|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999954 23334567788999999987643
No 345
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.24 E-value=88 Score=30.48 Aligned_cols=44 Identities=27% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHH
Q 004970 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 651 (721)
Q Consensus 608 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~ 651 (721)
+=++|++.|+----++-+|..|.++|+.+.|+-+...+.+..+.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 45778888888889999999999999999996554444444443
No 346
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=27.21 E-value=1.4e+02 Score=29.41 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC---CccccccCc--------cEEEecCCCCCCCCEEEEEeChhHHHHH
Q 004970 555 NETAGAYKVAVANRKRPSILALSRQKLPHLAG---TSIDGVEKG--------AYIISDNSSGNKPDVILIGTGSELEIAA 623 (721)
Q Consensus 555 ~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~---~~~~~~~~G--------~~~v~~~~~~~g~dvtIva~G~~v~~al 623 (721)
+|++.+|..|+- .+|-+||.--. .+.-+.. .+.++++.- ....+.+ -..|.|++-.+.=.+|.
T Consensus 25 edaARlLAQA~v-geG~IYi~G~~-Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~----~DRVllfs~~~~~~e~~ 98 (172)
T PF10740_consen 25 EDAARLLAQAIV-GEGTIYIYGFG-EMEAVEAEALYGAEPLPSAKRLSEDLENFDELTE----TDRVLLFSPFSTDEEAV 98 (172)
T ss_dssp HHHHHHHHHHHH-TT--EEEEE-G-GGGGGHHHHHCSTT--TTEEE--TT--------T----T-EEEEEES-S--HHHH
T ss_pred HHHHHHHHHHHh-cCCEEEEEecC-hHHHHHHHHHcCCCCCchhhcCcccccccccccc----cceEEEEeCCCCCHHHH
Confidence 678889998886 58999996322 2211100 011222211 1111122 24699999999988999
Q ss_pred HHHHHHHhCCCceEEEe
Q 004970 624 KAAEELRKGGKAVRVVS 640 (721)
Q Consensus 624 ~Aa~~L~~~Gi~~~VI~ 640 (721)
+.+++|.++|+.+-+|+
T Consensus 99 ~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 99 ALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 99999999999999998
No 347
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.78 E-value=1.7e+02 Score=32.60 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=52.7
Q ss_pred CcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEecc--CC-CCH
Q 004970 204 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKN--GN-TGY 280 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~d--G~-~d~ 280 (721)
++.++.+.|-|.+. +||.-.- -.+-+-.++++.|.. +...+.++++.||.++..+.- |. .|+
T Consensus 55 ~~~~~ll~gsGt~a----mEAav~s-l~~pgdkVLv~~nG~----------FG~R~~~ia~~~g~~v~~~~~~wg~~v~p 119 (383)
T COG0075 55 NGDVVLLSGSGTLA----MEAAVAS-LVEPGDKVLVVVNGK----------FGERFAEIAERYGAEVVVLEVEWGEAVDP 119 (383)
T ss_pred CCcEEEEcCCcHHH----HHHHHHh-ccCCCCeEEEEeCCh----------HHHHHHHHHHHhCCceEEEeCCCCCCCCH
Confidence 45788888888763 4443221 111122455555543 456788899999998887622 21 378
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 281 DDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 281 ~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
+++.++|++-.+ -+--+++|+.|-.|
T Consensus 120 ~~v~~~L~~~~~-~~~V~~vH~ETSTG 145 (383)
T COG0075 120 EEVEEALDKDPD-IKAVAVVHNETSTG 145 (383)
T ss_pred HHHHHHHhcCCC-ccEEEEEeccCccc
Confidence 889888873222 22345677777654
No 348
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=26.68 E-value=2.9e+02 Score=22.10 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=37.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhccc-CCceEEEEcccccccchh
Q 004970 610 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA-AVSARVSIEAGSTFGWEK 679 (721)
Q Consensus 610 vtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~-~~~~~v~vE~~~~~G~~~ 679 (721)
|+|.+. +....|.+|.+.|++.|+..+.+|+..-...-.+.. +..-.. ..+. |.++.....|+.+
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~---~~~~~~~~vP~-v~i~g~~igg~~~ 67 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMI---NRSGGRRTVPQ-IFIGDVHIGGCDD 67 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH---HHhCCCCccCE-EEECCEEEeChHH
Confidence 344443 445788889999999999999999876422111111 111111 3454 6666655556543
No 349
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.54 E-value=2.6e+02 Score=22.62 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=28.6
Q ss_pred CEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhh
Q 004970 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 647 (721)
Q Consensus 609 dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pl 647 (721)
+|+|.+.- ....|.+|.+.|++.||..+.+|+..-.+.
T Consensus 2 ~v~ly~~~-~C~~C~ka~~~L~~~gi~~~~~di~~~~~~ 39 (73)
T cd03027 2 RVTIYSRL-GCEDCTAVRLFLREKGLPYVEINIDIFPER 39 (73)
T ss_pred EEEEEecC-CChhHHHHHHHHHHCCCceEEEECCCCHHH
Confidence 46666653 446788898999999999999999864443
No 350
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.43 E-value=1.2e+02 Score=25.03 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=26.7
Q ss_pred CCEEEEEeChh-HHHHHHHHHHHHhCCCceEEEe
Q 004970 608 PDVILIGTGSE-LEIAAKAAEELRKGGKAVRVVS 640 (721)
Q Consensus 608 ~dvtIva~G~~-v~~al~Aa~~L~~~Gi~~~VI~ 640 (721)
.+|.|+..+.. ...|++.+..|++.|+.+++..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~ 35 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec
Confidence 36888888874 4689999999999999887744
No 351
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=25.87 E-value=7.4e+02 Score=27.75 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=31.5
Q ss_pred hHHHHHHHhhhcCC-cEEEEEecCCcccCCCCCCCC---ChhhhH-HHhcCCCcEEEee
Q 004970 498 YMRAAIRISALCEA-GVIYVMTHDSIGLGEDGPTHQ---PIEHLA-SFRAMPNILMLRP 551 (721)
Q Consensus 498 r~~dqir~~a~~~~-pV~~v~t~~g~~~g~dG~THq---~~edia-~lr~iPnl~V~~P 551 (721)
..|+.+..++-.++ +++++.-..++ .-||+|-- ..+++. -|++. |+.|+.-
T Consensus 163 ~vwEA~~~Ag~~kL~NLivIvD~N~~--qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAIGLAAREKLDNLIFVVNCNLQ--RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCC--ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 57788777766675 56666644444 45677653 345553 45555 8888764
No 352
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.83 E-value=58 Score=29.47 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=25.6
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
.++++||++|... ..--+..+.|+++||.+++-|-
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 3789999999854 2233455678899998888763
No 353
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=24.03 E-value=6e+02 Score=30.13 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=53.2
Q ss_pred HHHHHhcCCCeEEEEEECCCc-cccccccccccccHHHHHhh-CCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 225 SSLAGHLGLGKLIAFYDDNHI-SIDGDTEIAFTENVDKRFEG-LGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 225 l~~a~~~~L~~li~IvddN~~-~i~~~~~~~~~~~~~~~~~a-~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
+.-.+-++| |++|.+|..++ +.+++|..- .-|+. +++. -|+.+..+ . |-+++.+.+..+....++|+.|
T Consensus 401 iHDvaiqnL-PV~faIDRAGivG~DG~TH~G-~fDls-~l~~iPnmvi~aP---~-de~el~~ml~ta~~~~~gP~Ai-- 471 (627)
T COG1154 401 IHDVAIQNL-PVTFAIDRAGIVGADGPTHQG-LFDLS-FLRCIPNMVIMAP---R-DEEELRQMLYTALAQDDGPVAI-- 471 (627)
T ss_pred HHHHHhccC-CeEEEEecCcccCCCCCcccc-HHHHH-HHhcCCCcEEecC---C-CHHHHHHHHHHHHhcCCCCeEE--
Confidence 445566788 79999997764 566655311 11222 3333 27777777 4 9999999999998855589876
Q ss_pred EEeeccCCCC
Q 004970 303 TTTIGFGSPN 312 (721)
Q Consensus 303 ~T~kg~G~~~ 312 (721)
+-.||.|...
T Consensus 472 RyPrg~~~~~ 481 (627)
T COG1154 472 RYPRGNGVGV 481 (627)
T ss_pred EecCCCCCCC
Confidence 6778866553
No 354
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.75 E-value=1.2e+02 Score=25.08 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=28.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhCCCceEEEecCch--hhhHHHH
Q 004970 610 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSW--ELFDEQS 651 (721)
Q Consensus 610 vtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl--~pld~~~ 651 (721)
++||+.|. .+++.|..|.+.|.++.+|..... .-+|.+.
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~ 42 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDA 42 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHH
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHH
Confidence 67888887 566778888889999999986552 2355554
No 355
>PRK13685 hypothetical protein; Provisional
Probab=23.65 E-value=7.7e+02 Score=26.62 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred cEEEEEECCCccChhh-------HHHHHHHHHhcCCCeEEEEEECCCccc--ccccc--ccccccHHHHHhhCCCeEEEe
Q 004970 205 HYTYVILGDGCQMEGI-------ANEASSLAGHLGLGKLIAFYDDNHISI--DGDTE--IAFTENVDKRFEGLGWHVIWV 273 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~-------~~Eal~~a~~~~L~~li~IvddN~~~i--~~~~~--~~~~~~~~~~~~a~G~~~~~v 273 (721)
.++++++-||.-+.|. ..++.+.+...+....++-+-...-++ .+... ......+.++.+.-|-.++.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4578899999887653 356788888888754444333211111 11110 112344677788888888888
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 004970 274 KNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 274 ~dG~~d~~~l~~al~~a~~ 292 (721)
. |.+++.+++++..+
T Consensus 274 ---~-~~~~L~~if~~I~~ 288 (326)
T PRK13685 274 ---A-SLEELRAVYATLQQ 288 (326)
T ss_pred ---C-CHHHHHHHHHHHHH
Confidence 3 77888888887654
No 356
>PRK13683 hypothetical protein; Provisional
Probab=23.55 E-value=1e+02 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 266 LGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 266 ~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
+-+.+-+= +-. |.+++++-+.+|.+ .+.|.++|+++.|-
T Consensus 13 ~P~SVQRK-e~e-dA~alYq~I~~am~-sg~P~llELtCek~ 51 (87)
T PRK13683 13 MPISVQRK-EAE-DAEALYQQIRQAMR-SGNPRLLELTCEKV 51 (87)
T ss_pred cceEEEec-cHH-HHHHHHHHHHHHHh-cCCCcEEEEEecCc
Confidence 34444443 434 78889999999998 78999999999874
No 357
>PLN02309 5'-adenylylsulfate reductase
Probab=22.96 E-value=2.7e+02 Score=31.95 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH----HHHHHHHhhCCCCCCCCC-CHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHH
Q 004970 87 LVEKSVNTIRF----LAVDAVEKANSGHPGLPM-GCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLH 160 (721)
Q Consensus 87 ~l~~~a~~iR~----~~~~~~~~a~~GH~g~~l-s~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~ 160 (721)
-|+.+..+++. .+++-+....++.+.... |.-|. +.|+.. .+.+| +-..|.+|+|+.-+..|.+..
T Consensus 85 dl~~ln~~l~~~~~~eil~~a~~~~~~~ia~~~SG~ed~-vll~l~-~~~~~------~ipV~flDTG~lfpETy~~~d 155 (457)
T PLN02309 85 DFEKLAKELENASPLEIMDKALEKFGNDIAIAFSGAEDV-ALIEYA-HLTGR------PFRVFSLDTGRLNPETYRLFD 155 (457)
T ss_pred hHHHHHHHhhcCCHHHHHHHHHHHcCCCEEEEecchHHH-HHHHHH-HHhCC------CCcEEEecCCCCCHHHHHHHH
Confidence 36777777762 333332221234433222 44443 444432 23443 456777899999999988864
No 358
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=22.94 E-value=1.2e+02 Score=26.75 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 607 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 607 g~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..+|+|++.| +....|.+|.+.|.+.|++.+.+|+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~ 51 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE 51 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999888 467888899999999999999999853
No 359
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=22.27 E-value=4.5e+02 Score=29.14 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccc
Q 004970 176 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF 255 (721)
Q Consensus 176 ~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~ 255 (721)
.++++++|++++.. +-.-..-|.|=. ...|++..|+-..+| +++++-......-+..-...
T Consensus 58 ~a~s~v~GA~~aGa---------------r~~TaTSg~Gl~---Lm~E~l~~a~~~~~P-~Vi~~~~R~~ps~g~p~~~d 118 (365)
T COG0674 58 GAISAVIGASYAGA---------------RAFTATSGQGLL---LMAEALGLAAGTETP-LVIVVAQRPLPSTGLPIKGD 118 (365)
T ss_pred HHHHHHHHHHhhCc---------------ceEeecCCccHH---HHHHHHHHHHhccCC-eEEEEeccCcCCCccccccc
Confidence 45677788877643 223344444443 788999999999984 55544444332222211112
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
..|+.....+ ||..+...|-.+-++....|++.|.+ ..-|+++-..
T Consensus 119 q~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~-~~~Pvi~~~D 164 (365)
T COG0674 119 QSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEK-VLTPVIVLLD 164 (365)
T ss_pred HHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHH-hcCCEEEeec
Confidence 2344433333 89887762101012223445555544 4668766444
No 360
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=22.02 E-value=2e+02 Score=33.37 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=40.4
Q ss_pred HHHHhhC---CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCCC
Q 004970 260 DKRFEGL---GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKA 314 (721)
Q Consensus 260 ~~~~~a~---G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~~ 314 (721)
.++.+.+ |+.|+...-|. ++++...++-|++....|.+|++.-=++-||+.-+
T Consensus 140 ~ElI~~L~~~G~~yv~fKPGt--IeqI~svi~IAka~P~~pIilq~egGraGGHHSwe 195 (717)
T COG4981 140 VELIEELGDDGFPYVAFKPGT--IEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWE 195 (717)
T ss_pred HHHHHHHhhcCceeEEecCCc--HHHHHHHHHHHhcCCCCceEEEEecCccCCccchh
Confidence 3444444 99998886675 99999999999986678999988877777766544
No 361
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=21.47 E-value=2.1e+02 Score=24.89 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcC
Q 004970 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148 (721)
Q Consensus 89 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~ 148 (721)
+++-.++|..+-+.-.....-+.|.+.=...|+.+|+.. + .+..|.+.+++|++.
T Consensus 8 ~~l~~r~~~ai~~~~~~~~~~~~~vs~egQ~lF~~l~Kt---~--~dv~W~g~~IiV~d~ 62 (91)
T PF09793_consen 8 ERLQKRLRKAIEEAKRKLSSIGPGVSPEGQKLFDALSKT---I--PDVRWDGKNIIVLDE 62 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHhh---C--CCCEECCCeEEEeCc
Confidence 344445555444433332222345555467777777766 3 268999999999873
Done!