Query 004970
Match_columns 721
No_of_seqs 332 out of 2796
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rim_A Transketolase, TK; TPP, 100.0 2E-125 5E-130 1099.7 58.3 631 88-721 22-698 (700)
2 3m49_A Transketolase; alpha-be 100.0 2E-123 7E-128 1083.5 61.1 630 88-721 29-690 (690)
3 3uk1_A Transketolase; structur 100.0 2E-124 8E-129 1093.0 53.1 622 89-721 46-710 (711)
4 3kom_A Transketolase; rossmann 100.0 4E-123 1E-127 1079.3 57.0 625 87-721 5-663 (663)
5 1itz_A Transketolase; calvin c 100.0 9E-118 3E-122 1041.3 66.6 638 82-720 11-675 (675)
6 3l84_A Transketolase; TKT, str 100.0 4E-118 1E-122 1030.7 60.4 599 86-719 4-631 (632)
7 1r9j_A Transketolase; domains, 100.0 4E-117 1E-121 1034.7 62.3 620 88-721 6-655 (673)
8 2r8o_A Transketolase 1, TK 1; 100.0 4E-117 1E-121 1035.5 56.8 627 88-721 4-663 (669)
9 1gpu_A Transketolase; transfer 100.0 4E-116 1E-120 1028.4 63.4 623 88-721 7-664 (680)
10 2e6k_A Transketolase; structur 100.0 3E-115 1E-119 1017.1 60.6 619 86-721 6-651 (651)
11 3mos_A Transketolase, TK; thia 100.0 2E-102 6E-107 902.4 50.8 572 86-719 11-616 (616)
12 2qtc_A Pyruvate dehydrogenase 100.0 4.7E-93 1.6E-97 844.2 53.8 615 70-721 60-856 (886)
13 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.6E-87 5.6E-92 782.1 42.5 529 70-721 13-622 (629)
14 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 5.9E-87 2E-91 776.9 43.3 531 70-721 11-619 (621)
15 3ahc_A Phosphoketolase, xylulo 100.0 1.4E-82 4.9E-87 740.4 31.2 570 101-721 75-785 (845)
16 2yic_A 2-oxoglutarate decarbox 100.0 1.9E-55 6.4E-60 521.4 36.8 501 170-700 243-853 (868)
17 2jgd_A 2-oxoglutarate dehydrog 100.0 1.8E-54 6E-59 515.6 36.0 504 169-719 318-931 (933)
18 2xt6_A 2-oxoglutarate decarbox 100.0 2.8E-54 9.5E-59 523.0 38.0 501 170-700 488-1098(1113)
19 1ik6_A Pyruvate dehydrogenase; 100.0 1.1E-49 3.8E-54 434.5 19.8 289 410-721 50-367 (369)
20 2bfd_B 2-oxoisovalerate dehydr 100.0 5.2E-49 1.8E-53 425.9 22.9 291 409-721 19-340 (342)
21 2ozl_B PDHE1-B, pyruvate dehyd 100.0 2.2E-48 7.6E-53 420.4 23.2 294 409-721 13-339 (341)
22 1w85_B Pyruvate dehydrogenase 100.0 4.5E-48 1.5E-52 416.1 24.4 291 411-721 3-322 (324)
23 1umd_B E1-beta, 2-OXO acid deh 100.0 7E-48 2.4E-52 414.7 24.3 291 410-721 3-322 (324)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 3.1E-47 1.1E-51 412.0 23.8 288 410-721 4-336 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 1.4E-28 4.8E-33 268.3 26.1 216 90-333 43-292 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 1.1E-25 3.9E-30 244.7 24.5 234 108-374 72-321 (368)
27 1qs0_A 2-oxoisovalerate dehydr 99.9 4.6E-26 1.6E-30 250.4 15.2 178 168-374 177-360 (407)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 1.1E-24 3.6E-29 239.6 15.4 138 167-317 157-298 (400)
29 2ozl_A PDHE1-A type I, pyruvat 99.9 1.3E-22 4.5E-27 220.1 29.4 177 170-376 138-319 (365)
30 4feg_A Pyruvate oxidase; carba 99.7 6.3E-17 2.1E-21 187.8 18.0 189 112-335 368-573 (603)
31 1yd7_A 2-keto acid:ferredoxin 99.7 9.7E-18 3.3E-22 184.5 7.1 247 457-721 63-394 (395)
32 2uz1_A Benzaldehyde lyase; thi 99.7 2E-16 7E-21 182.1 14.6 164 114-306 369-546 (563)
33 1ozh_A ALS, acetolactate synth 99.7 3.9E-16 1.3E-20 179.8 15.4 161 115-307 371-544 (566)
34 1ybh_A Acetolactate synthase, 99.7 2.9E-16 1E-20 181.8 12.6 168 114-312 376-564 (590)
35 2pgn_A Cyclohexane-1,2-dione h 99.6 2.3E-16 8E-21 182.5 11.4 170 113-313 373-554 (589)
36 1v5e_A Pyruvate oxidase; oxido 99.6 2.6E-16 8.8E-21 182.2 11.7 164 114-308 363-541 (590)
37 2iht_A Carboxyethylarginine sy 99.6 2.7E-16 9.1E-21 181.5 10.7 168 113-306 380-561 (573)
38 3eya_A Pyruvate dehydrogenase 99.6 1.5E-15 5.1E-20 174.4 16.6 165 113-308 355-531 (549)
39 1t9b_A Acetolactate synthase, 99.6 9.8E-16 3.3E-20 179.6 15.1 172 112-312 458-643 (677)
40 1q6z_A BFD, BFDC, benzoylforma 99.6 6.1E-16 2.1E-20 176.8 12.6 163 113-306 351-525 (528)
41 2vbi_A Pyruvate decarboxylase; 99.6 9.5E-16 3.2E-20 176.6 11.6 161 113-307 359-534 (566)
42 2pan_A Glyoxylate carboligase; 99.6 8.9E-16 3.1E-20 178.6 10.4 166 113-308 391-582 (616)
43 1ovm_A Indole-3-pyruvate decar 99.6 6.2E-16 2.1E-20 177.6 8.2 159 114-306 359-532 (552)
44 2wvg_A PDC, pyruvate decarboxy 99.6 1.9E-15 6.5E-20 174.2 12.2 161 113-307 363-542 (568)
45 2vbf_A Branched-chain alpha-ke 99.6 1.2E-15 4E-20 176.0 9.1 159 114-306 376-551 (570)
46 2vk8_A Pyruvate decarboxylase 99.6 1.6E-15 5.6E-20 174.6 10.2 164 114-306 364-542 (563)
47 2nxw_A Phenyl-3-pyruvate decar 99.6 1.4E-15 4.8E-20 175.2 7.8 159 114-306 373-542 (565)
48 2c31_A Oxalyl-COA decarboxylas 99.6 1.4E-14 4.7E-19 167.0 14.7 165 113-308 373-549 (568)
49 2q28_A Oxalyl-COA decarboxylas 99.6 1.3E-14 4.4E-19 167.1 13.3 165 113-308 368-546 (564)
50 2x7j_A 2-succinyl-5-enolpyruvy 99.5 1.1E-14 3.6E-19 169.2 9.6 163 113-307 403-581 (604)
51 3hww_A 2-succinyl-5-enolpyruvy 99.4 1.4E-13 4.8E-18 158.2 10.7 158 113-306 365-539 (556)
52 3lq1_A 2-succinyl-5-enolpyruvy 99.4 2.2E-13 7.6E-18 157.3 7.2 164 113-311 384-565 (578)
53 2c42_A Pyruvate-ferredoxin oxi 99.2 5.3E-10 1.8E-14 137.9 23.2 208 459-677 54-334 (1231)
54 3ju3_A Probable 2-oxoacid ferr 99.0 3.6E-10 1.2E-14 102.9 7.3 99 607-720 13-115 (118)
55 2c42_A Pyruvate-ferredoxin oxi 98.7 2.1E-08 7.2E-13 123.8 10.2 99 204-306 953-1070(1231)
56 1v5e_A Pyruvate oxidase; oxido 93.8 0.25 8.4E-06 56.6 11.4 115 460-580 45-165 (590)
57 2iht_A Carboxyethylarginine sy 92.7 0.5 1.7E-05 53.8 11.5 117 459-579 49-171 (573)
58 2pgn_A Cyclohexane-1,2-dione h 92.6 0.37 1.3E-05 55.1 10.3 115 460-579 45-165 (589)
59 2uz1_A Benzaldehyde lyase; thi 92.1 0.56 1.9E-05 53.2 10.9 116 459-579 42-164 (563)
60 1ozh_A ALS, acetolactate synth 91.7 0.55 1.9E-05 53.4 10.3 116 459-579 49-170 (566)
61 1ybh_A Acetolactate synthase, 91.7 0.62 2.1E-05 53.2 10.7 116 459-579 51-172 (590)
62 3hww_A 2-succinyl-5-enolpyruvy 90.7 0.72 2.5E-05 52.3 9.9 116 460-579 48-171 (556)
63 1t9b_A Acetolactate synthase, 90.5 0.89 3.1E-05 52.9 10.7 115 459-578 121-241 (677)
64 2x7j_A 2-succinyl-5-enolpyruvy 89.7 0.76 2.6E-05 52.7 9.1 116 459-579 70-198 (604)
65 2pan_A Glyoxylate carboligase; 89.6 1.6 5.6E-05 50.0 11.8 115 460-579 67-188 (616)
66 1q6z_A BFD, BFDC, benzoylforma 89.4 0.83 2.8E-05 51.3 9.0 117 459-580 39-162 (528)
67 3eya_A Pyruvate dehydrogenase 88.7 1.6 5.5E-05 49.2 10.8 113 460-578 43-161 (549)
68 3lq1_A 2-succinyl-5-enolpyruvy 88.6 1.1 3.7E-05 51.0 9.3 117 459-579 50-178 (578)
69 2q28_A Oxalyl-COA decarboxylas 87.7 1.7 5.8E-05 49.2 10.2 116 459-579 46-169 (564)
70 2nxw_A Phenyl-3-pyruvate decar 87.7 2.3 7.8E-05 48.2 11.2 118 458-579 58-186 (565)
71 2c31_A Oxalyl-COA decarboxylas 87.6 1.6 5.5E-05 49.5 9.9 116 459-579 48-171 (568)
72 2wvg_A PDC, pyruvate decarboxy 86.4 3.5 0.00012 46.7 11.8 117 459-579 42-169 (568)
73 4feg_A Pyruvate oxidase; carba 86.3 2.6 8.8E-05 48.2 10.7 115 459-579 51-171 (603)
74 2vbi_A Pyruvate decarboxylase; 86.1 3.5 0.00012 46.6 11.6 117 459-580 42-170 (566)
75 2vk8_A Pyruvate decarboxylase 85.3 4.3 0.00015 45.8 11.9 116 459-579 43-170 (563)
76 1umd_B E1-beta, 2-OXO acid deh 85.0 2.9 9.8E-05 43.9 9.5 98 177-301 63-171 (324)
77 3mos_A Transketolase, TK; thia 82.8 4.6 0.00016 46.3 10.6 106 170-300 359-468 (616)
78 1qs0_B 2-oxoisovalerate dehydr 82.4 2.5 8.4E-05 44.7 7.6 100 177-303 64-174 (338)
79 2vbf_A Branched-chain alpha-ke 81.3 3.2 0.00011 46.9 8.7 115 460-579 65-190 (570)
80 1ovm_A Indole-3-pyruvate decar 81.0 5.2 0.00018 45.0 10.2 116 460-579 45-170 (552)
81 2ozl_B PDHE1-B, pyruvate dehyd 80.7 5.3 0.00018 42.2 9.5 98 177-302 74-183 (341)
82 1w85_B Pyruvate dehydrogenase 80.4 5 0.00017 42.0 9.2 99 176-301 61-170 (324)
83 3kom_A Transketolase; rossmann 79.7 8.5 0.00029 44.5 11.4 108 171-302 408-519 (663)
84 3l84_A Transketolase; TKT, str 79.6 7.8 0.00027 44.5 11.1 107 171-302 387-497 (632)
85 1ik6_A Pyruvate dehydrogenase; 75.6 9.4 0.00032 40.8 9.6 99 177-302 110-219 (369)
86 2e6k_A Transketolase; structur 75.3 11 0.00037 43.5 10.7 101 178-302 410-513 (651)
87 2r8o_A Transketolase 1, TK 1; 74.7 12 0.0004 43.4 10.8 101 178-302 415-518 (669)
88 3m49_A Transketolase; alpha-be 74.4 14 0.00048 42.9 11.3 72 223-301 468-542 (690)
89 1itz_A Transketolase; calvin c 74.1 7.5 0.00026 45.1 9.0 88 205-302 441-531 (675)
90 1gpu_A Transketolase; transfer 73.7 7.9 0.00027 44.9 9.0 76 220-302 448-526 (680)
91 1w85_A Pyruvate dehydrogenase 73.7 13 0.00044 39.7 10.1 82 492-576 173-263 (368)
92 2o1s_A 1-deoxy-D-xylulose-5-ph 71.0 16 0.00056 41.7 10.8 101 177-302 373-476 (621)
93 1r9j_A Transketolase; domains, 70.3 15 0.0005 42.6 10.2 88 205-302 428-518 (673)
94 3uk1_A Transketolase; structur 69.1 22 0.00074 41.4 11.3 99 178-301 461-562 (711)
95 1umd_A E1-alpha, 2-OXO acid de 66.1 29 0.001 36.8 10.9 110 463-576 142-265 (367)
96 2bfd_A 2-oxoisovalerate dehydr 65.4 19 0.00065 38.8 9.2 89 486-576 186-283 (400)
97 2ozl_A PDHE1-A type I, pyruvat 62.1 15 0.00053 39.1 7.7 84 492-576 171-259 (365)
98 2bfd_B 2-oxoisovalerate dehydr 61.9 19 0.00066 37.8 8.4 101 177-303 79-190 (342)
99 3rim_A Transketolase, TK; TPP, 61.3 36 0.0012 39.4 11.1 74 222-302 472-550 (700)
100 1yd7_A 2-keto acid:ferredoxin 60.6 11 0.00037 40.6 6.2 93 205-305 89-188 (395)
101 1qs0_A 2-oxoisovalerate dehydr 55.4 38 0.0013 36.5 9.4 82 492-576 212-303 (407)
102 2o1x_A 1-deoxy-D-xylulose-5-ph 52.2 32 0.0011 39.3 8.7 101 177-303 376-479 (629)
103 3kkj_A Amine oxidase, flavin-c 50.0 13 0.00045 35.3 4.4 31 608-641 3-33 (336)
104 1m72_A Caspase-1; caspase, cys 45.9 62 0.0021 32.8 8.8 74 235-310 33-110 (272)
105 2yic_A 2-oxoglutarate decarbox 45.7 51 0.0017 39.2 9.1 109 177-307 596-712 (868)
106 3sir_A Caspase; hydrolase; 2.6 42.9 74 0.0025 31.9 8.7 75 235-311 21-99 (259)
107 2j32_A Caspase-3; Pro-caspase3 42.3 71 0.0024 31.9 8.4 74 235-310 17-95 (250)
108 2dko_A Caspase-3; low barrier 41.8 1.5E+02 0.0052 26.9 9.9 55 236-292 18-77 (146)
109 4ehd_A Caspase-3; caspase, apo 40.4 1.2E+02 0.0039 30.9 9.8 75 235-311 45-124 (277)
110 2jgd_A 2-oxoglutarate dehydrog 38.5 64 0.0022 38.7 8.5 106 177-308 664-781 (933)
111 1f1j_A Caspase-7 protease; cas 37.5 78 0.0027 32.7 8.0 75 235-311 70-149 (305)
112 2wem_A Glutaredoxin-related pr 35.5 47 0.0016 29.1 5.2 87 608-709 20-112 (118)
113 2fvt_A Conserved hypothetical 34.8 15 0.00051 33.4 1.8 35 607-641 67-102 (135)
114 3od5_A Caspase-6; caspase doma 33.6 81 0.0028 32.0 7.3 56 235-292 22-82 (278)
115 2l69_A Rossmann 2X3 fold prote 33.2 1.2E+02 0.0042 25.3 6.8 71 205-292 52-122 (134)
116 2ab1_A Hypothetical protein; H 32.7 17 0.00059 32.4 1.8 35 607-641 61-97 (122)
117 1nw9_B Caspase 9, apoptosis-re 31.8 77 0.0026 32.1 6.8 56 235-292 22-82 (277)
118 2xt6_A 2-oxoglutarate decarbox 31.8 1.2E+02 0.004 37.2 9.4 109 177-307 841-957 (1113)
119 2fi9_A Outer membrane protein; 30.9 18 0.00062 32.4 1.6 35 607-641 68-103 (128)
120 2ql9_A Caspase-7; cysteine pro 30.7 1.4E+02 0.0049 28.0 8.0 55 236-292 46-105 (173)
121 3ipz_A Monothiol glutaredoxin- 29.7 1.1E+02 0.0037 25.9 6.5 36 608-643 18-57 (109)
122 3p45_A Caspase-6; protease, hu 29.6 1.6E+02 0.0055 27.8 8.1 56 235-292 45-105 (179)
123 2gm2_A Conserved hypothetical 29.1 17 0.0006 32.8 1.2 35 607-641 64-99 (132)
124 3zyw_A Glutaredoxin-3; metal b 28.0 94 0.0032 26.6 5.8 36 608-643 16-55 (111)
125 3fwz_A Inner membrane protein 27.2 64 0.0022 28.5 4.7 33 607-642 7-39 (140)
126 1xmp_A PURE, phosphoribosylami 26.0 2.7E+02 0.0091 26.1 8.7 68 608-677 12-80 (170)
127 3uoa_B Mucosa-associated lymph 25.9 1.5E+02 0.0052 31.6 8.0 74 235-311 6-81 (390)
128 2nn3_C Caspase-1; cysteine pro 25.5 89 0.003 32.3 6.0 56 235-292 61-120 (310)
129 3cpk_A Uncharacterized protein 25.4 26 0.0009 32.3 1.7 34 607-640 88-122 (150)
130 2wci_A Glutaredoxin-4; redox-a 25.3 1.3E+02 0.0044 26.9 6.3 36 608-643 35-74 (135)
131 3h11_B Caspase-8; cell death, 24.7 1.4E+02 0.0048 30.1 7.2 56 235-292 18-85 (271)
132 1qtn_A Caspase-8; apoptosis, d 24.0 1.6E+02 0.0055 27.3 6.9 56 235-292 24-91 (164)
133 5nul_A Flavodoxin; electron tr 23.5 65 0.0022 28.2 4.0 32 615-646 9-40 (138)
134 2h54_A Caspase-1; allosteric s 23.5 1.4E+02 0.0046 28.2 6.4 55 235-291 44-100 (178)
135 3gx8_A Monothiol glutaredoxin- 22.0 85 0.0029 27.4 4.3 36 608-643 16-58 (121)
136 1wik_A Thioredoxin-like protei 21.9 1.4E+02 0.0048 25.1 5.7 36 608-643 15-54 (109)
137 3ibs_A Conserved hypothetical 21.1 2.7E+02 0.0091 26.0 8.2 87 204-290 111-212 (218)
138 3oz2_A Digeranylgeranylglycero 20.9 67 0.0023 33.0 4.1 30 609-641 6-35 (397)
139 4got_A Methionine-binding lipo 20.8 2.2E+02 0.0076 28.4 7.6 100 608-708 6-129 (249)
140 3llv_A Exopolyphosphatase-rela 20.3 1.1E+02 0.0037 26.7 4.8 33 607-642 6-38 (141)
No 1
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-125 Score=1099.69 Aligned_cols=631 Identities=46% Similarity=0.768 Sum_probs=581.1
Q ss_pred HHHHH-HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-
Q 004970 88 VEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD- 165 (721)
Q Consensus 88 l~~~a-~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~- 165 (721)
|+++| ++||.++++|+.++++||+|++||++||+++||+.+|++||+||+|++|||||+|+||++|.+|++++++||+
T Consensus 22 l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~ 101 (700)
T 3rim_A 22 IDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGL 101 (700)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCC
Confidence 88888 8999999999999999999999999999999999999999999999999999999999999999999999981
Q ss_pred -------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCC---CcCCcEEEEEECCCccC
Q 004970 166 -------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDN---EIVDHYTYVILGDGCQM 217 (721)
Q Consensus 166 -------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~---~~~~~~vv~viGDG~~~ 217 (721)
|+++++|+||+|+|.|+|+|+|.|+++++||++++ +..+++|||++|||+++
T Consensus 102 ~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~ 181 (700)
T 3rim_A 102 ELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIE 181 (700)
T ss_dssp CHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHH
T ss_pred CHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccc
Confidence 67899999999999999999999999999999887 56789999999999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCC
Q 004970 218 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 297 (721)
Q Consensus 218 eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P 297 (721)
||++|||+++|++++|+|+|+|||||+|+|+++++....+++.++|++|||+++.|.||| |+++|.+|+++|++..++|
T Consensus 182 eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~-D~~al~~Al~~A~~~~~~P 260 (700)
T 3rim_A 182 EGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGE-NVVGIEEAIANAQAVTDRP 260 (700)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHCCSSC
T ss_pred cChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCC-CHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999987778999999999999999977999 9999999999998746899
Q ss_pred EEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCC-CCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 004970 298 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 376 (721)
Q Consensus 298 ~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~-p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~ 376 (721)
++|+|+|+||+|+++++++.+||+.++++++++.++++++|+.+ +|.+|+++++.|+...++|...+++|++.+++|++
T Consensus 261 ~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~ 340 (700)
T 3rim_A 261 SFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWAR 340 (700)
T ss_dssp EEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999998889999999999999999999999655 59999999999988777888889999999999999
Q ss_pred hChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccC
Q 004970 377 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 456 (721)
Q Consensus 377 ~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~ 456 (721)
.+|+.++++++++++++|..|...+|.|..+.+.++||++++++|.++++.+|+++++++|++.|+++.++++..|++ +
T Consensus 341 ~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~-~ 419 (700)
T 3rim_A 341 REPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGP-P 419 (700)
T ss_dssp HCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESC-G
T ss_pred hChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcc-c
Confidence 999999999999999999989888888875556789999999999999999999999999999888876666678877 6
Q ss_pred C------C----CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCC
Q 004970 457 P------E----ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 526 (721)
Q Consensus 457 ~------p----~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~ 526 (721)
| | +||||+||+||+|+++|+|||++|+ ++||+.||+.|++|+++|||++|++++||+|+++|+|+++|+
T Consensus 420 ~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG-~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~ 498 (700)
T 3rim_A 420 SISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGP-TRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGE 498 (700)
T ss_dssp GGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCT
T ss_pred ccccccCCcccCCceeecCccHHHHHHHHHHHHHcCC-CEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC
Confidence 7 8 5999999999999999999999942 799999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCC--CcEEEEEcCCCCCCCCCCccccccCccEEEecCCC
Q 004970 527 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS 604 (721)
Q Consensus 527 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~--~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~ 604 (721)
||+|||++||+++||+||||+|++|+|++|++++|++|+++.+ +|++||++|+++|.++.+..+.+++|+|++++..+
T Consensus 499 dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~G~~vlr~g~~ 578 (700)
T 3rim_A 499 DGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGG 578 (700)
T ss_dssp TCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECCCTTCCHHHHHHSCEEEECCSC
T ss_pred CCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCCcCcccccccCCCcEEEecCCc
Confidence 9999999999999999999999999999999999999997655 69999999999987665433568889975544200
Q ss_pred ---CCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhh
Q 004970 605 ---GNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 605 ---~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v 681 (721)
++.+||+||++|+||++|++|+++|+++||+++|||++|++|||.+..+|++++++..++.+|++|++...||.+++
T Consensus 579 ~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~~~~ 658 (700)
T 3rim_A 579 LQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLV 658 (700)
T ss_dssp CCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGHHHH
T ss_pred cccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHHHHH
Confidence 00239999999999999999999999999999999999999999987778888887544446999999999999998
Q ss_pred cCCceEEEeccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 682 GSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 682 ~~~~~~ig~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+..+..+|+|+|+.||+.++|+++||||+++|+++|+++|
T Consensus 659 ~~~~~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 698 (700)
T 3rim_A 659 GDTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAERAL 698 (700)
T ss_dssp CTTCEEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred hcCCcEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHHHh
Confidence 8777889999999999999999999999999999999864
No 2
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.9e-123 Score=1083.45 Aligned_cols=630 Identities=53% Similarity=0.903 Sum_probs=580.3
Q ss_pred HHHHH-HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-
Q 004970 88 VEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD- 165 (721)
Q Consensus 88 l~~~a-~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~- 165 (721)
|+++| ++||.++++|+.++++||+|++||++||+++||+.+|++||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 29 l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 108 (690)
T 3m49_A 29 IEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDV 108 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCCC
Confidence 78888 8999999999999999999999999999999999999999999999999999999999999999999999981
Q ss_pred -------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh
Q 004970 166 -------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 220 (721)
Q Consensus 166 -------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~ 220 (721)
|+++++|+||+|+|+|+|+|+|.++++++||+++++..+++|||++|||+++||+
T Consensus 109 ~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~ 188 (690)
T 3m49_A 109 TMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGV 188 (690)
T ss_dssp CHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhcc
Confidence 6788999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
+|||+++|++++|+|+++|+|||+|+|+++++....+++.++|++|||++++|+||| |+++|.+|+++|++..++|++|
T Consensus 189 ~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~-d~~~l~~Al~~a~~~~~~P~lI 267 (690)
T 3m49_A 189 SAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGN-DIEAIAKAIEEAKADEKRPTLI 267 (690)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTT-CHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCeecccchhhccchhHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999988788999999999999999988999 9999999999998645899999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCC-CCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhC
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~-p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
+|+|+||+|+++++++.+|||.+++++++++++++++|+.+ ||.+++++++.|+. ..+++.....+|++.+.+|..++
T Consensus 268 ~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 347 (690)
T 3m49_A 268 EVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAY 347 (690)
T ss_dssp EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeecccccCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhC
Confidence 99999999999888899999999999999999999999766 89999999999987 55667777889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
|++++++++++.+++|..|...+|.|..+ ++++||++++++|.++++.+|+++++++|+++|+++.++....|+++.+|
T Consensus 348 ~~~a~~~~~~~~~~lp~~~~~~~~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~ 426 (690)
T 3m49_A 348 PELANELQAAMNGLLPEGWEQNLPTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYS 426 (690)
T ss_dssp HHHHHHHHHHHTTCCCTTGGGGCCCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTT
T ss_pred HHHHHHHHHHhcccCchhhhhhccccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCC
Confidence 99999999999999999999999988654 57899999999999999999999999999999988877777788775579
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+||||+||+||+|+++|+|||++|+ ++||+.||+.|++++..|||++|++++||+|+++|+|+++|+||+|||++||++
T Consensus 427 ~R~~d~GIaE~~mv~~A~GlA~~gG-~~P~~~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a 505 (690)
T 3m49_A 427 GKNIWYGVREFAMGAAMNGIALHGG-LKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLA 505 (690)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHH
T ss_pred CceEEcCchHHHHHHHHHHHHHcCC-CEEEEEecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHH
Confidence 9999999999999999999999942 799999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc---cccccCccEEEecCCCCCCCCEEEEEe
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS---IDGVEKGAYIISDNSSGNKPDVILIGT 615 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~---~~~~~~G~~~v~~~~~~~g~dvtIva~ 615 (721)
+||+||||+|++|+|++|++++|++|+++.++|++||++|+.+|.++.+. .+.+++|+|++++.. ++.+||+||++
T Consensus 506 ~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~~vlr~g~-~g~~dvtiia~ 584 (690)
T 3m49_A 506 ALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASK-KETADVILLAT 584 (690)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSCEEEECCS-SSSCSEEEEEC
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCeEEEEecC-CCCCCEEEEEe
Confidence 99999999999999999999999999985579999999999988664322 245788987665420 00249999999
Q ss_pred ChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCC
Q 004970 616 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 695 (721)
Q Consensus 616 G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~ 695 (721)
|+||+.|++|+++|+++||+++|||++|++|||.+..+|++++++...+.+|++|++...||.++++..+..+|+|.|+.
T Consensus 585 G~~v~~Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~~~~~~~~~~igid~Fg~ 664 (690)
T 3m49_A 585 GSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGA 664 (690)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHTTTCEEECCCSCCC
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHHHHhccCCCEEccCcCcC
Confidence 99999999999999999999999999999999987667778888533344599999999999999877778899999999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 696 SAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 696 ~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|+.++|+++||||+++|+++|+++|
T Consensus 665 sg~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 665 SAPGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp SSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 3
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.3e-124 Score=1093.00 Aligned_cols=622 Identities=53% Similarity=0.847 Sum_probs=559.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC---
Q 004970 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD--- 165 (721)
Q Consensus 89 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~--- 165 (721)
+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 46 ~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~ 125 (711)
T 3uk1_A 46 TLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPI 125 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCCH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred -----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHH
Q 004970 166 -----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 222 (721)
Q Consensus 166 -----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~ 222 (721)
|+|+++|+||+|+|+|+|+|+|.++++++||+|+++..+++|||++|||+++||++|
T Consensus 126 ~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~ 205 (711)
T 3uk1_A 126 EELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISH 205 (711)
T ss_dssp HHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHH
Confidence 678899999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
||+++|++++|+|+|+|+|||+|+|+++++....+|+.++|++|||++++++||| |+++|.+|+++|++ .++|++|+|
T Consensus 206 Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~-d~~~l~~Al~~A~~-~~~P~lI~v 283 (711)
T 3uk1_A 206 EACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGH-DVDAIDAAIAKAKR-SDKPSLICC 283 (711)
T ss_dssp HHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETT-CHHHHHHHHHHHTT-CSSCEEEEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCC-CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999999999999999999999987788999999999999999945999 99999999999987 789999999
Q ss_pred EEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHH
Q 004970 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 382 (721)
Q Consensus 303 ~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 382 (721)
+|+||+|+++++++.+||+.+++++++++++++++|+.+||.+|+++++.|+.. .+|...+.+|++.+++|++++|+.+
T Consensus 284 ~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~~p~~a 362 (711)
T 3uk1_A 284 KTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGKRSEDDWNAAFAQYRAKYPAEA 362 (711)
T ss_dssp EC--------------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ccccccCCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccchhHHHHHHHHHHHHhhChhhH
Confidence 999999999888889999999999999999999999999999999999999766 6677778899999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccC--
Q 004970 383 AEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT-- 456 (721)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~-- 456 (721)
.++++++++++|+.|...++.+. ..++.++||++++++|.++++.+|+++++++|+++|+++.++++..|++ +
T Consensus 363 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~-~~~ 441 (711)
T 3uk1_A 363 AEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRA-NAD 441 (711)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEE-CSS
T ss_pred HHHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhh-hhc
Confidence 99999999999988876554332 1234689999999999999999999999999999888876666678977 6
Q ss_pred -CC---CccccCCchHHHHHHHHHHHHhc-CCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC
Q 004970 457 -PE---ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH 531 (721)
Q Consensus 457 -~p---~R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH 531 (721)
|| +||||+||+||+|+++|+|||++ | ++||+.+|++|++|+++|||++|++++||+|+++|+|+++|+||+||
T Consensus 442 ~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G--~~Pv~~~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH 519 (711)
T 3uk1_A 442 GPGVQWGNHINYGVREFGMSAAINGLVLHGG--YKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH 519 (711)
T ss_dssp SSSEECCSEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred cCCCCCCcEEEeCccHHHHHHHHHHHHHcCC--CEEEEEEhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc
Confidence 99 99999999999999999999996 6 79999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc--cccccCccEEEecCCCCCC--
Q 004970 532 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNK-- 607 (721)
Q Consensus 532 q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g-- 607 (721)
|++||+++||+||||+|++|+|++|++++|++|++ .++|+|||++|+++|.++.+. .+.+++|+|++++.. |
T Consensus 520 q~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-~~~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~~vl~~~~---G~~ 595 (711)
T 3uk1_A 520 QSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVA-HQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWD---EEI 595 (711)
T ss_dssp CCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSEECCCCCCHHHHHHGGGSSEEEECCC---SSC
T ss_pred CChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEeeCCCCCCCCCccccccccCCCeEEEEecC---CCC
Confidence 99999999999999999999999999999999998 699999999999988765432 246888999877632 4
Q ss_pred --CCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCc
Q 004970 608 --PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKG 685 (721)
Q Consensus 608 --~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~ 685 (721)
+||+||++|+||++|++|+++|+++||+++|||++|++|||+++++|+++|++++.. +|++|++...||+++++.++
T Consensus 596 ~~~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~-~V~vE~~~~~g~~~~~g~~~ 674 (711)
T 3uk1_A 596 VARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEG 674 (711)
T ss_dssp CSEEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCSGGGHHHHTTTS
T ss_pred CCCCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCe-EEEEeCCccccHHHHhCCCc
Confidence 799999999999999999999999999999999999999999988888999998865 49999999999999998778
Q ss_pred eEEEeccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 686 KAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 686 ~~ig~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.++|+|+|+.+|+.++|+++||||+++|+++|+++|
T Consensus 675 ~~iGid~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 675 GVVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp EEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred eEEEeCCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 899999999999999999999999999999999864
No 4
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.6e-123 Score=1079.34 Aligned_cols=625 Identities=47% Similarity=0.796 Sum_probs=568.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-
Q 004970 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD- 165 (721)
Q Consensus 87 ~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~- 165 (721)
+++++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~ 84 (663)
T 3kom_A 5 IPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYDL 84 (663)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred -------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh
Q 004970 166 -------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 220 (721)
Q Consensus 166 -------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~ 220 (721)
|+++++|+||+|+|+|+|+|+|.++++.+||+++++..+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~ 164 (663)
T 3kom_A 85 SIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGV 164 (663)
T ss_dssp CHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhch
Confidence 6778999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEE
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTL 299 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~l 299 (721)
+|||+++|++++|+|+++|+|||+|+|+++++....+++.++|++|||+++ .| ||| |+++|.+|+++|++..++|++
T Consensus 165 ~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~A~~~~~~P~l 242 (663)
T 3kom_A 165 SHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENV-DGH-DFVAIEKAINEAHSQQQKPTL 242 (663)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHTTCEEEEEE-ETT-CHHHHHHHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCcccccchhhhcchhHHHHHHHCCCeEEEEE-cCC-CHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999999999999999988788999999999999999 66 999 999999999999873489999
Q ss_pred EEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhCh
Q 004970 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 379 (721)
Q Consensus 300 I~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 379 (721)
|+|+|+||+|+++++++.+||+.+++++++++++++++|+.+||.+++++++.|+.. .++...+++|++.+.+|+++ |
T Consensus 243 I~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~-p 320 (663)
T 3kom_A 243 ICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEANWQGQRNLFKDS-P 320 (663)
T ss_dssp EEEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHTTS-T
T ss_pred EEEecccccccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHH-hhcchhhHHHHHHHHHhhcc-h
Confidence 999999999999998899999999999999999999999888999999999888755 56666778999999999877 8
Q ss_pred HHHHHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCccc
Q 004970 380 EEAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKD 455 (721)
Q Consensus 380 ~~~~~~~~~~~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~ 455 (721)
+++++++++++++|+.|...+|.+. ..++.++||++++++|.++++.+|+++++++|+++|+++.++....|+++
T Consensus 321 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~ 399 (663)
T 3kom_A 321 -KFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNT 399 (663)
T ss_dssp -THHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTC
T ss_pred -HHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccc
Confidence 8889999999999988875544331 12456899999999999999999999999999999988777666778523
Q ss_pred CCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChh
Q 004970 456 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535 (721)
Q Consensus 456 ~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~e 535 (721)
+||+||||+||+||+|+++|+|||++|+ ++||+.+|++|++|+++|||+.|++++||+++++|+|+++|+||+|||+++
T Consensus 400 ~~p~R~~d~GIaE~~~v~~a~GlA~~gG-~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~e 478 (663)
T 3kom_A 400 QEGANYLSYGVREFGMAAIMNGLSLYGG-IKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478 (663)
T ss_dssp STTCCEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred cCCCCeEecCccHHHHHHHHHHHHHcCC-CEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHH
Confidence 7999999999999999999999999942 799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCc--cccccCccEEEecCCCCCCCCEEEE
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILI 613 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~--~~~~~~G~~~v~~~~~~~g~dvtIv 613 (721)
|+++||+||||+|++|+|++|++.+|++|+++.++|++||++|+++|.++.+. .+.+.+|+|++++.+ |+|||||
T Consensus 479 d~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~p~~~~~~~~~~~~~~G~~vl~~~~---g~dvtii 555 (663)
T 3kom_A 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIARGGYLVKDNP---DAKLTIV 555 (663)
T ss_dssp HHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEECCCCCCHHHHHHHTTTCEEEECCT---TCSCEEE
T ss_pred HHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccCCCcCccccchhcccCceEEEEecC---CCCEEEE
Confidence 99999999999999999999999999999975689999999999998765432 235788988887642 6899999
Q ss_pred EeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhc-CCceEEEecc
Q 004970 614 GTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG-SKGKAIGIDR 692 (721)
Q Consensus 614 a~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~-~~~~~ig~d~ 692 (721)
++|+||++|++|+++|+++||+++|||++|++|||.++.+|+++|++++.++ |++|++...||.++++ ..+..+|+|.
T Consensus 556 a~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~-v~vE~~~~~g~~~~~gG~~~~~igid~ 634 (663)
T 3kom_A 556 ATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPA-VFVEMAQPDMWYKYMPKAGGEVKGIYS 634 (663)
T ss_dssp ECTTHHHHHHHHHHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCE-EEECSSCCGGGGGGCCTTCEEEECCCS
T ss_pred EecHHHHHHHHHHHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeE-EEEecCCcccHHHHhcccCCcEEEecC
Confidence 9999999999999999999999999999999999999988889999887654 9999999999999986 6667899999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 693 FGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 693 f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|+.+|+.++|+++||||+++|++++++++
T Consensus 635 Fg~sg~~~~l~~~~Glt~e~I~~~~~~~~ 663 (663)
T 3kom_A 635 FGESAPAEDLFKRFGFTVENISNIVAKYV 663 (663)
T ss_dssp CCCSSCHHHHHHHHTCSHHHHHHHHTTTC
T ss_pred CcCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 99999999999999999999999999875
No 5
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=8.6e-118 Score=1041.34 Aligned_cols=638 Identities=87% Similarity=1.368 Sum_probs=580.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHH
Q 004970 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (721)
Q Consensus 82 ~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l 161 (721)
++..+ |+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||+|+||++|.+|+++++
T Consensus 11 l~~~~-l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l 89 (675)
T 1itz_A 11 ATGEL-LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 89 (675)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHHHHHHH
Confidence 55556 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC--C-------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCC
Q 004970 162 AGY--D-------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 214 (721)
Q Consensus 162 ~G~--~-------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG 214 (721)
+|+ . |+++++|+||+|+|+|+|+|+|.++++++||+++++..+++|||++|||
T Consensus 90 ~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG 169 (675)
T 1itz_A 90 AGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDG 169 (675)
T ss_dssp HTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred cCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHh
Confidence 998 1 5678999999999999999999999999999998888899999999999
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcC
Q 004970 215 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 294 (721)
Q Consensus 215 ~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~ 294 (721)
+++||++|||+++|++++|+|+++|+|||+|+|++++.....+++.++|++|||+++.++|||+|+++|.+++++|++..
T Consensus 170 ~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~ 249 (675)
T 1itz_A 170 CQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVT 249 (675)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCC
T ss_pred HhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999987666889999999999999933499769999999999998645
Q ss_pred CCCEEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 004970 295 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEY 374 (721)
Q Consensus 295 ~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~ 374 (721)
++|++|+|+|+||+|+++++++.+||+.+++++++++++++++|+.+||.+++++++.|+...+++...+.+|++.+.++
T Consensus 250 ~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 329 (675)
T 1itz_A 250 DKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEY 329 (675)
T ss_dssp SSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 89999999999999999988889999999999999999999999888999999988777654455566677999999999
Q ss_pred HhhChHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcc
Q 004970 375 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK 454 (721)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~ 454 (721)
..++|+.+.++++.+.+.+|..|...+|.|...++..+||++++++|.++++.+|+++++++|+++|+++.++++..|++
T Consensus 330 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~ 409 (675)
T 1itz_A 330 EKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQK 409 (675)
T ss_dssp HHHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCT
T ss_pred hhhChHHHHHHHHHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccc
Confidence 98899999889999999999999988998843345789999999999999999999999999999888776666667874
Q ss_pred cCCCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCCh
Q 004970 455 DTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 534 (721)
Q Consensus 455 ~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ 534 (721)
++||+||||+||+||+|+++|+|||++|.+++||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|||++
T Consensus 410 ~~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~ 489 (675)
T 1itz_A 410 DTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPI 489 (675)
T ss_dssp TCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCS
T ss_pred cCCCCCeEeecccHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcH
Confidence 36999999999999999999999999992259999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEE
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIG 614 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva 614 (721)
||+++||+||||+|++|+|++|++.+|++|++..++|++||++|+++|.++.+....+++|+|++++...+..+||+||+
T Consensus 490 edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~~~~~~~~~~~Ga~vl~~~~~G~~~dv~iva 569 (675)
T 1itz_A 490 EHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMG 569 (675)
T ss_dssp SHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCCCTTCCHHHHTTSSEEEEECCSTTCCSEEEEE
T ss_pred HHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCccccccccCCEEEecccCCCCCCEEEEE
Confidence 99999999999999999999999999999998558999999999998877654333578898877652100128999999
Q ss_pred eChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCC
Q 004970 615 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 694 (721)
Q Consensus 615 ~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~ 694 (721)
+|+++++|++|+++|+++||+++|||++|++|||+++.+|++++++++.+.+|++|++...||+++++.++.++|+|.|+
T Consensus 570 ~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~~~~~~~ig~d~fg 649 (675)
T 1itz_A 570 TGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFG 649 (675)
T ss_dssp CGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHCSSCEEECCCSCC
T ss_pred ECHHHHHHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhcCCCceEEEeCCCC
Confidence 99999999999999999999999999999999999986778899988633359999999999999987777889999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 004970 695 ASAPAGKIYKEFGITAEAVITAAKEV 720 (721)
Q Consensus 695 ~~g~~~~l~~~~gl~~e~I~~~i~~l 720 (721)
.+|+.++|+++||||+++|+++|+++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~~ 675 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKSF 675 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 99999999999999999999999764
No 6
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=4.3e-118 Score=1030.65 Aligned_cols=599 Identities=42% Similarity=0.700 Sum_probs=544.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC
Q 004970 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (721)
Q Consensus 86 ~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~ 165 (721)
+.|+++|++||.++++++.++++||+|++||++||+++| ..+|++||+||+|++|||||+|+||++|++|++++++|+.
T Consensus 4 ~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~ 82 (632)
T 3l84_A 4 QILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYD 82 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCC
Confidence 459999999999999999999999999999999999999 6779999999999999999999999999999999999982
Q ss_pred -------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh
Q 004970 166 -------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 220 (721)
Q Consensus 166 -------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~ 220 (721)
|+++++|+||+|+|+|+|+|+|.++++++|| ++..+++|||++|||+++||+
T Consensus 83 ~~~~~l~~~r~~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n---~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 83 LSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLG---SDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CCHHHHTTTTCTTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHC---TTTCCCCEEEEEEHHHHHSHH
T ss_pred CCHHHHHHHhcCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccc---cCCCCCeEEEEECCcchhhcc
Confidence 5678999999999999999999999998887 334589999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
+|||+++|++++|+|+++|+|||+|+|+++++....+++.++|++|||+++.| ||| |+++|.+|+++|++ .++|++|
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v-dGh-d~~~l~~al~~A~~-~~~P~lI 236 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSI-NGH-DYEEINKALEQAKK-STKPCLI 236 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEE-ETT-CHHHHHHHHHHHHT-CSSCEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcccccchhhhcChhHHHHHHHcCCeEEEE-eeC-CHHHHHHHHHHHHh-CCCCEEE
Confidence 99999999999999999999999999999998778899999999999999976 999 99999999999998 8999999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCC-CCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhCh
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 379 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~-~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 379 (721)
+|+|+||+|+++++++.+||+.+++++++++++++++| +.+||.+++++++.|++..+++...+.+|++.+.+ +.+|
T Consensus 237 ~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~--~~~p 314 (632)
T 3l84_A 237 IAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEK--SAKK 314 (632)
T ss_dssp EEECCTTTTCGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH--SSCH
T ss_pred EEeeEeeecCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhc--ccCc
Confidence 99999999999988889999999999999999999999 78899999999998876556677778899999988 6788
Q ss_pred HHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-C
Q 004970 380 EEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-E 458 (721)
Q Consensus 380 ~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p 458 (721)
+.+.++ +|+.|...+|.+.. ....++|++++++|.++++.+|+++++++|+++|+++.+ .+.+ +| |
T Consensus 315 ~~~~~~-------~p~~~~~~~~~~~~-~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~----~~~~-~f~p 381 (632)
T 3l84_A 315 ELLERL-------LNPDFNKIAYPDFK-GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTEL----HSMG-DFVE 381 (632)
T ss_dssp HHHHHH-------HSCCSTTCCCCCCT-TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCC----TTSC-BTTT
T ss_pred hhhhhh-------Cccchhhhcchhcc-ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcch----hccc-ccCC
Confidence 887664 47778877777653 236899999999999999999999999999988876532 1223 58 9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+||||+||+||+|+++|+|||++|+ ++||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|||++||++
T Consensus 382 ~R~~d~GIaE~~~v~~a~GlA~~gG-~~P~~~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a 460 (632)
T 3l84_A 382 GKNIHFGIREHAMAAINNAFARYGI-FLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460 (632)
T ss_dssp SSEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHH
T ss_pred CCeEEeCccHHHHHHHHHHHHHcCC-CEEEEEecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHH
Confidence 9999999999999999999999942 799999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC--ccccccCccEEEecCCCCCCCCEEEEEeC
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISDNSSGNKPDVILIGTG 616 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~--~~~~~~~G~~~v~~~~~~~g~dvtIva~G 616 (721)
+||+||||+|++|+|++|++++|++|++ .++|++||++|+++ ++.+ ....+.+|+|++++.+ |+|||||++|
T Consensus 461 ~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~~--~~~~~~~~~~~~~g~~vl~~~~---g~dvtiia~G 534 (632)
T 3l84_A 461 TFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQKL--KALNEPVFGDVKNGAYLLKESK---EAKFTLLASG 534 (632)
T ss_dssp HHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSCB--CCCCCCSBCCGGGSSEEEECCT---TCSEEEEECG
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCCC--CCCccccccccccccEEEEecC---CCCEEEEEec
Confidence 9999999999999999999999999997 68999999999886 3222 2235667778776632 6899999999
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCC
Q 004970 617 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 696 (721)
Q Consensus 617 ~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~ 696 (721)
+||++|++|++.|+++||+++|||++|++|||+++.+|++++++ + . +|++|++...||+++++ .++|+|+|+.+
T Consensus 535 ~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~-~-vv~vE~~~~~g~~~~~~---~~iGid~Fg~s 608 (632)
T 3l84_A 535 SEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-G-E-VIGVEAAHSNELYKFCH---KVYGIESFGES 608 (632)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-S-E-EEEECSSCCGGGGGTCS---EEECCCSCCCS
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-C-C-EEEEeCChhhhHHHHhC---eEEEcCCCccc
Confidence 99999999999999999999999999999999997777788887 2 3 59999999999998885 78999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 004970 697 APAGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 697 g~~~~l~~~~gl~~e~I~~~i~~ 719 (721)
|+.++|+++||||+++|+++|++
T Consensus 609 g~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 609 GKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp SCHHHHHHHTTCSHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHhh
Confidence 99999999999999999999874
No 7
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.7e-117 Score=1034.72 Aligned_cols=620 Identities=50% Similarity=0.871 Sum_probs=567.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC--
Q 004970 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-- 165 (721)
Q Consensus 88 l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-- 165 (721)
|++++++||.++++|+.++++||+|++||++|++++||+.+|++||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 6 ~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~ 85 (673)
T 1r9j_A 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLT 85 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999981
Q ss_pred ------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH
Q 004970 166 ------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 221 (721)
Q Consensus 166 ------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~ 221 (721)
|+++++|+||+|+|.|+|+|+|.++++++||+++++..+++|||++|||+++||++
T Consensus 86 ~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~ 165 (673)
T 1r9j_A 86 MDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVC 165 (673)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHH
Confidence 67889999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccC-CCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 222 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNG-NTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 222 ~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG-~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
|||+++|++++|+|+++|+|||+++|++++.....+++.++|++|||+++.++|| | |+++|.+|+++|++..++|++|
T Consensus 166 ~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~-d~~~l~~Al~~A~~~~~~P~lI 244 (673)
T 1r9j_A 166 QEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDT-DYEGLRKALAEAKATKGKPKMI 244 (673)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTT-CHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHHHHHcCCCCEEE
Confidence 9999999999999999999999999999987666889999999999999933499 9 9999999999998646899999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCC-CCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhCh
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 379 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~-~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 379 (721)
+|+|+||+|++ .+++.+||+.++++++++.++++++| +..||++|+++++.|+...+++...+++|++.+.+|++.+|
T Consensus 245 ~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P 323 (673)
T 1r9j_A 245 VQTTTIGFGSS-KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFP 323 (673)
T ss_dssp EEECCTTTTST-TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred EEecccccccc-cCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhCh
Confidence 99999999999 77789999999999999999999999 66799999999998876556777778899999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcc--cccCcccCC
Q 004970 380 EEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTP 457 (721)
Q Consensus 380 ~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~--~~~f~~~~~ 457 (721)
+.+.++++++.+.+|..|...+|.| .+..+||++++++|.++++.+|+++++++|+++|+++..++ ...|++++|
T Consensus 324 ~~~~~~~~~~~~~~p~~~~~~~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~ 400 (673)
T 1r9j_A 324 AEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK 400 (673)
T ss_dssp HHHHHHHHHHTTCCCTTTGGGSCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT
T ss_pred hHHHHHHHHhcCCCCchhhhhcccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC
Confidence 9999999999999999998888888 34689999999999999999999999999998888765433 455864369
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|+||||+||+||+|+++|+|||++|+ ++||+.+|++|++|+++|||+.|++++||++++||+|+++|+||+|||++||+
T Consensus 401 ~~R~id~GIaE~~~~~~a~GlA~~GG-~~P~~~~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edl 479 (673)
T 1r9j_A 401 EGRYIRFGVREHAMCAILNGLDAHDG-IIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479 (673)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCeEecCccHHHHHHHHHHHHhcCC-CEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHH
Confidence 99999999999999999999999962 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeCh
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 617 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~ 617 (721)
++||+||||+|++|+|++|++.+|++|++..++|++||++|++.|.++.+....+++|+|++++. +.+||+||++|+
T Consensus 480 a~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~Ga~vl~~g---~~~dv~lia~G~ 556 (673)
T 1r9j_A 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAYSVVDV---PDLQLVIVASGS 556 (673)
T ss_dssp HHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECCCTTCCHHHHHTSCEEEECC---TTCSEEEEECGG
T ss_pred HHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcccccccCCCEEEeeC---CCCCEEEEEech
Confidence 99999999999999999999999999998558999999999988876654333578898876642 138999999999
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCCC
Q 004970 618 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 697 (721)
Q Consensus 618 ~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~g 697 (721)
++++|++|+++|+++ |+++|||++|++|||+++.+|+.++++...+ +|++|++...||+++++ .++|+|.|+.+|
T Consensus 557 ~v~~al~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~-vv~vE~~~~~g~~~~v~---~~~g~d~f~~sg 631 (673)
T 1r9j_A 557 EVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASA 631 (673)
T ss_dssp GHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEESCSSCCCSS
T ss_pred hHHHHHHHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCe-EEEEeCCCccchHHhcC---ceEEeccCCCCC
Confidence 999999999999988 9999999999999999986666777765545 59999999999998874 348999999999
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 698 PAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 698 ~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+.++|+++||+|+++|+++|+++|
T Consensus 632 ~~~~L~~~~g~~~~~I~~~i~~~l 655 (673)
T 1r9j_A 632 PAGVLYKKFGITVEEVVRTGRELA 655 (673)
T ss_dssp CHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999998864
No 8
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=4.2e-117 Score=1035.48 Aligned_cols=627 Identities=50% Similarity=0.857 Sum_probs=571.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC--
Q 004970 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-- 165 (721)
Q Consensus 88 l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-- 165 (721)
|+++|++||.++++++.++++||+|++||++||+++||+.+|++||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 678899999999999999999999999999999999999889999999999999999999999999999999999981
Q ss_pred ------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH
Q 004970 166 ------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 221 (721)
Q Consensus 166 ------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~ 221 (721)
|+++++|+||+|+|.|+|+|+|.++++++||+++.+..+++|||++|||+++||++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 56789999999999999999999999999999887777999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 222 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 222 ~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
|||+++|++++|+|+++|+|||+|+|++++.....+++.++|++|||+++ .| ||| |+++|.+++++|++..++|++|
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~a~~~~~~P~lI 241 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDI-DGH-DAASIKRAVEEARAVTDKPSLL 241 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEE-ETT-CHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcEeccccccccCccHHHHHHHCCCeEEeEE-CCC-CHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999998876667899999999999999 66 999 9999999999998745899999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChH
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 380 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 380 (721)
+++|+||+|+++++++.+||+.+++++++++++++++|+..||.+++++++.|+.. +++...+.+|++.+.+|.+.+|+
T Consensus 242 ~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ 320 (669)
T 2r8o_A 242 MCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAK-EAGQAKESAWNEKFAAYAKAYPQ 320 (669)
T ss_dssp EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHH
T ss_pred EEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhChH
Confidence 99999999999877789999999999999999999999888999999988777643 45555677999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCC----CCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccC
Q 004970 381 EAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 456 (721)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~p~~~----~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~ 456 (721)
.+.++++.+.+.+|..|...+|.|. ..++..+||++++++|.++++.+|+++++++|+++|+++.++++..|++ +
T Consensus 321 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~-~ 399 (669)
T 2r8o_A 321 EAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-D 399 (669)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTT-C
T ss_pred HHHHHHHHhcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccc-c
Confidence 9999988888889987776666551 2334689999999999999999999999999999888876666778987 7
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
||+||||+||+||+|+++|+|||++|+ ++||+.+|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||
T Consensus 400 ~p~R~id~GIaE~~~v~~a~GlA~~gG-~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~ed 478 (669)
T 2r8o_A 400 AAGNYIHYGVREFGMTAIANGISLHGG-FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQ 478 (669)
T ss_dssp TTCSEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred CCCCeeecchhHHHHHHHHHHHHHcCC-CeEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHH
Confidence 999999999999999999999999942 7999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCcc--ccccCccEEEecCCCCCCCCEEEEE
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI--DGVEKGAYIISDNSSGNKPDVILIG 614 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~--~~~~~G~~~v~~~~~~~g~dvtIva 614 (721)
+++||+||||+|++|+|++|++.+|++|++..++|++||++|+..|.++.+.. ..+++|+|++++.. +.+||+||+
T Consensus 479 la~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~~~G~~vl~~~~--g~~dv~iva 556 (669)
T 2r8o_A 479 VASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA--GQPELIFIA 556 (669)
T ss_dssp HHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECCCCCCHHHHHHGGGSCEEEECCS--SSCSEEEEE
T ss_pred HHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCccchhhhccCCCEEEeccC--CCCCEEEEE
Confidence 99999999999999999999999999999855899999999999887654321 23678888776521 038999999
Q ss_pred eChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCC
Q 004970 615 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 694 (721)
Q Consensus 615 ~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~ 694 (721)
+|+++++|++|+++|+++||+++|||++|++|||+++.+|++++++++.+.+|++|++...||+++++.+...+|+|.|+
T Consensus 557 ~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~~~~~~~~~ig~d~fg 636 (669)
T 2r8o_A 557 TGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFG 636 (669)
T ss_dssp CGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHHHHTTSSEEEEECSCC
T ss_pred ECHHHHHHHHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCchhhHHHHhcCCCeEEEcCCCC
Confidence 99999999999999999999999999999999999987778888887533459999999999999987766789999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 695 ASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 695 ~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.+|++++|+++||||+++|+++|+++|
T Consensus 637 ~sg~~~~l~~~~Gl~~~~I~~~~~~~~ 663 (669)
T 2r8o_A 637 ESAPAELLFEEFGFTVDNVVAKAKELL 663 (669)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 9
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=3.6e-116 Score=1028.39 Aligned_cols=623 Identities=52% Similarity=0.866 Sum_probs=568.6
Q ss_pred HHH-HHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-
Q 004970 88 VEK-SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD- 165 (721)
Q Consensus 88 l~~-~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~- 165 (721)
|++ +|++||.++++++.++++||+|++||++|++++||+. |+|||+||+|++|||||+|+||++|.+|++++++|+.
T Consensus 7 l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~-~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 7 IDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHh-CCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 677 9999999999999999999999999999999999999 9999999999999999999999999999999999981
Q ss_pred ------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH
Q 004970 166 ------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 221 (721)
Q Consensus 166 ------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~ 221 (721)
|+++++|+||+|+|.|+|+|+|.++++++||+++.+..+++|||++|||+++||++
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~ 165 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGIS 165 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred CHHHHHhhcccCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhH
Confidence 56789999999999999999999999999999888778999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 222 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 222 ~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
|||+++|++++|+|+++|+|||+|+|++++.....+++.++|++|||+++ .| |||+|+++|.+++++|++..++|++|
T Consensus 166 ~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~~d~~~l~~al~~A~~~~~~P~lI 244 (680)
T 1gpu_A 166 SEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVE-NGNEDLAGIAKAIAQAKLSKDKPTLI 244 (680)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEES-CTTTCHHHHHHHHHHHHHCTTSCEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCceEecccccccCccHHHHHHhcCCeEEEEe-cCCCCHHHHHHHHHHHHHCCCCCEEE
Confidence 99999999999999999999999999998876667899999999999999 65 99769999999999998745899999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCC-CCCCCCchhhHHHHHHH-HhhhhhhHHHHHHHHHHHHhhC
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~-~~p~~v~~ev~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
+|+|+||+|++ .+++.+||+.+++++++++++++++|+ ..+|.+++++++.|... .+++.....+|++.++++.+.+
T Consensus 245 ~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 323 (680)
T 1gpu_A 245 KMTTTIGYGSL-HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKF 323 (680)
T ss_dssp EEECCTTTTST-TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeecccccc-cCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhC
Confidence 99999999999 667789999999999999999999995 77899999998888752 2456666789999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCccc---
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKD--- 455 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~--- 455 (721)
|+.+.++++.+.+.+|..|...+|.|...++..+||++++++|.++++.+|+++++++|++.|+++.++++..|++.
T Consensus 324 p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~ 403 (680)
T 1gpu_A 324 PELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSG 403 (680)
T ss_dssp HHHHHHHHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTS
T ss_pred hHHHHHHHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccccccccccccc
Confidence 99999999999999999998888887433456899999999999999999999999999998887766666678652
Q ss_pred --CCCCccccCCchHHHHHHHHHHHHhcCCCCc-cEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCC
Q 004970 456 --TPEERNVRFGVREHGMGAICNGIALHSPGLI-PYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ 532 (721)
Q Consensus 456 --~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~-Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq 532 (721)
+||+||||+||+||+|+|+|+|||++|. ++ ||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|||
T Consensus 404 ~~~~p~R~~d~gIaE~~~vg~a~GlA~~Gg-~~~P~~~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq 482 (680)
T 1gpu_A 404 SGNYSGRYIRYGIREHAMGAIMNGISAFGA-NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQ 482 (680)
T ss_dssp SEETTCCEEECCSCHHHHHHHHHHHHHHCT-TCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTC
T ss_pred ccCCCCceecCCccHHHHHHHHHHHHhcCC-CceEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccC
Confidence 5899999999999999999999999983 69 9999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEE
Q 004970 533 PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVIL 612 (721)
Q Consensus 533 ~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtI 612 (721)
++||+++||+||||+|++|+|++|++++|++|++..++|++||++|+++|.++.+....+++|+|++++. +.+||||
T Consensus 483 ~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dvti 559 (680)
T 1gpu_A 483 PIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYVLQDV---ANPDIIL 559 (680)
T ss_dssp CSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCCCTTCCHHHHTTSCEEEECC---SSCSEEE
T ss_pred CHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCcchhhccCCCEEEecC---CCCCEEE
Confidence 9999999999999999999999999999999998558999999999998877654333377898776642 1389999
Q ss_pred EEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEecc
Q 004970 613 IGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDR 692 (721)
Q Consensus 613 va~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~ 692 (721)
|++|+||++|++|+++|+++||+++|||++|++|||+++.+|++++++++.+. |++|++...||+++++ ..+|+|.
T Consensus 560 va~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v~---~~~gv~~ 635 (680)
T 1gpu_A 560 VATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYAH---QSFGIDR 635 (680)
T ss_dssp EECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTCS---EEECCCS
T ss_pred EEEcHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhcC---cceeeCc
Confidence 99999999999999999999999999999999999999877788999887566 9999999999998875 2389999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 693 FGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 693 f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|+.+|+.++|+++||+|+++|+++|+++|
T Consensus 636 f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 664 (680)
T 1gpu_A 636 FGASGKAPEVFKFFGFTPEGVAERAQKTI 664 (680)
T ss_dssp CCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-115 Score=1017.10 Aligned_cols=619 Identities=51% Similarity=0.871 Sum_probs=566.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC
Q 004970 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (721)
Q Consensus 86 ~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~ 165 (721)
++.+++|++||.++++++.++++||+|++||++|++++||+.+|++||+||+|.+|||||+|+||++|.+|++++++|++
T Consensus 6 ~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 85 (651)
T 2e6k_A 6 DLETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYD 85 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999981
Q ss_pred --------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 166 --------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 166 --------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
|+++++|+||+|+|.|+|+|+|.++++++||+++++..+++|||++|||+++||
T Consensus 86 ~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG 165 (651)
T 2e6k_A 86 LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEG 165 (651)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchh
Confidence 567899999999999999999999999999998888789999999999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCE
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPT 298 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~ 298 (721)
++|||+++|++++|+|+++|+|||+|+|++++.....+++.++|++|||+++ .| ||| |+++|.+++++|++ .++|+
T Consensus 166 ~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~a~~-~~~P~ 242 (651)
T 2e6k_A 166 VSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVE-DVN-DLEALRKAIKLAKL-DERPT 242 (651)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHTTCEEEEES-CTT-CHHHHHHHHHHHHH-SSSCE
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCCcccccccccccCccHHHHHHhCCCeEEEEe-CCC-CHHHHHHHHHHHHH-CCCCE
Confidence 9999999999999999999999999999999876668899999999999999 65 999 99999999999998 88999
Q ss_pred EEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Q 004970 299 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 378 (721)
Q Consensus 299 lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 378 (721)
+|+|+|+||+|++ .+++.+||+.+++++++++++++++|+.++|.+++++++.|+.. .++.....+|++.++++..++
T Consensus 243 lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 320 (651)
T 2e6k_A 243 LIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMR-EKGRAWQEAWEKALEAYARAY 320 (651)
T ss_dssp EEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeEeccccc-ccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHh-hhchhhHHHHHHHHHHhhhhC
Confidence 9999999999999 77889999999999999999999999988999999888777532 344555678999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCC
Q 004970 379 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 458 (721)
Q Consensus 379 p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p 458 (721)
|++++++++.+.+++|. |...+|.+ .+..+||++++++|.++++.+|+++++++|+++|+++..+++..|++++||
T Consensus 321 p~~~~~~~~~~~~~~p~-~~~~~~~~---~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p 396 (651)
T 2e6k_A 321 PDLHQELMRRLRGELPP-LPEEPPSF---DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPL 396 (651)
T ss_dssp HHHHHHHHHHHTTCCCC-CCCSCCCC---CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTT
T ss_pred hHHHHHHHHHhcCcCCc-hhhhcccc---CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCC
Confidence 99998899988888887 87777776 346899999999999999999999999999998887755566778743699
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhH
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia 538 (721)
+||||+||+||+|+++|+|||++|. ++||+.+|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||++
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg-~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla 475 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGG-YRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLM 475 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred CceEecCcCHHHHHHHHHHHHHcCC-CEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHH
Confidence 9999999999999999999999983 699999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChh
Q 004970 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 618 (721)
Q Consensus 539 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~ 618 (721)
+||+||||+|++|+|++|++.+|++|++..++|++||++|+..|.++.+....+++|+|++++. +++|++||++|++
T Consensus 476 ~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dv~iva~G~~ 552 (651)
T 2e6k_A 476 SLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV---EEPQGVLVATGSE 552 (651)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCBCCCCHHHHGGGGGSSEEEECC---SSCSEEEEECTTH
T ss_pred HhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCCCcchhhhhcCCCEEEeeC---CCCCEEEEEECHH
Confidence 9999999999999999999999999998558999999999998876543223477888876642 1489999999999
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceEEEeccCCCCCC
Q 004970 619 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAP 698 (721)
Q Consensus 619 v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~ig~d~f~~~g~ 698 (721)
+++|++|+++|+++||+++|||++|++|||.+..+|+++++++..+ +|++|++...||++++. .++|+|.|+.+|+
T Consensus 553 v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~-vv~vE~~~~~G~~~~v~---~~ig~d~f~~sg~ 628 (651)
T 2e6k_A 553 VHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLP-VVAVEAGASLGWERYAH---KVVALDRFGASAP 628 (651)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEECCCSCCCSCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCe-EEEEeCCccCchHHhCC---CEEEeCCCCCCCC
Confidence 9999999999999999999999999999999986777889887655 59999999999998874 7899999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Q 004970 699 AGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 699 ~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.++|+++||||+++|+++|+++|
T Consensus 629 ~~~l~~~~gl~~~~I~~~i~~~l 651 (651)
T 2e6k_A 629 YPEVYERLGFTPERVAEAFLSLV 651 (651)
T ss_dssp TTHHHHHTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999875
No 11
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.9e-102 Score=902.41 Aligned_cols=572 Identities=27% Similarity=0.380 Sum_probs=483.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC
Q 004970 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (721)
Q Consensus 86 ~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~ 165 (721)
+.|+++|++||.++++++.++++||+|++||++||+++||+++|++||+||+|++|||||||+||++|.+|++++++|+.
T Consensus 11 ~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~~~l~G~~ 90 (616)
T 3mos_A 11 QALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFL 90 (616)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHHHHHcCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999961
Q ss_pred ------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhH
Q 004970 166 ------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 221 (721)
Q Consensus 166 ------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~ 221 (721)
|+++++|+||+|+|+|+|+|+|.++.+ + .+++|||++|||+++||++
T Consensus 91 ~~~~l~~~r~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~----~-----~~~~vv~v~GDG~~~eG~~ 161 (616)
T 3mos_A 91 AEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFD----K-----ASYRVYCLLGDGELSEGSV 161 (616)
T ss_dssp CGGGGGGTTCTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTS----C-----CSCCEEEEEETGGGGSHHH
T ss_pred CHHHHHHhccCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhC----C-----CCCEEEEEECccccccCcH
Confidence 567899999999999999999998643 2 2588999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEECCCccccccccccc-cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 222 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 222 ~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
||++++|++++|+++++|+|||+|++++++.... .+++.++|++|||+++.| ||| |+++|.++++++ .++|++|
T Consensus 162 ~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~V-dG~-d~~~l~~al~~~---~~~P~lI 236 (616)
T 3mos_A 162 WEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGH-SVEELCKAFGQA---KHQPTAI 236 (616)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEE-ETT-CHHHHHHHHHSC---CSSCEEE
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEE-cCC-CHHHHHHHHHhc---CCCCEEE
Confidence 9999999999999999999999999999886543 468899999999999988 999 999999999755 4799999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChH
Q 004970 301 RVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 380 (721)
Q Consensus 301 ~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 380 (721)
+|+|+||+|+++++++.+||+.+++.+++++++++++...+ ++. +..|+
T Consensus 237 ~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~ 285 (616)
T 3mos_A 237 IAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQ-----------------SKK--------------KILAT 285 (616)
T ss_dssp EEECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHTCC-----------------CCC--------------CCCCB
T ss_pred EEEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHHHH-----------------hhh--------------hhCcC
Confidence 99999999999888899999999998888776655421000 000 00000
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCc
Q 004970 381 EAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEER 460 (721)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R 460 (721)
... +.......+.......|+|..+ ...+||++++++|.+++++||+++++++|+++++.+ ..|++ +||+|
T Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~-----~~~~~-~~p~R 356 (616)
T 3mos_A 286 PPQ--EDAPSVDIANIRMPSLPSYKVG-DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIFKK-EHPDR 356 (616)
T ss_dssp CCC--CCCCCCCCSCCCCSSCCCCCTT-CBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSH-----HHHHH-HCGGG
T ss_pred ccc--hhhhhhhhhccccCCCcccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcch-----hhHHH-hCCCC
Confidence 000 0000000000000123455432 468999999999999999999999999999766542 45766 79999
Q ss_pred cccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHH
Q 004970 461 NVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 540 (721)
Q Consensus 461 ~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~l 540 (721)
|||+||+||+|+++|+|||+.|. ++|++.+|++|++|++|||++.+++++||+++++|+|+++|+||+|||++||+++|
T Consensus 357 ~~d~gIaE~~~v~~a~G~A~~G~-~~~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l 435 (616)
T 3mos_A 357 FIECYIAEQNMVSIAVGCATRNR-TVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMF 435 (616)
T ss_dssp EEECCSCHHHHHHHHHHHHGGGC-CEEEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHH
T ss_pred eEEcCccHHHHHHHHHHHHHcCC-CCEEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHh
Confidence 99999999999999999999994 47999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHH
Q 004970 541 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELE 620 (721)
Q Consensus 541 r~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~ 620 (721)
|++|||+|++|+|++|+..+++++++ .++|++||++|++.|.++.. .+.+++|++.+++++ .+.|++||++|++++
T Consensus 436 ~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~~~-~~~~~~Gka~vl~eg--~d~dv~iva~G~~v~ 511 (616)
T 3mos_A 436 RSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIYNN-NEDFQVGQAKVVLKS--KDDQVTVIGAGVTLH 511 (616)
T ss_dssp HTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCSCT-TCCCCTTCCEEEECC--SSEEEEEECCTHHHH
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccCCC-cccccCCeEEEEEeC--CCCCEEEEEeCHHHH
Confidence 99999999999999999999999996 58999999999988876543 345778988777762 113499999999999
Q ss_pred HHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh----c----CCceEEEec
Q 004970 621 IAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV----G----SKGKAIGID 691 (721)
Q Consensus 621 ~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v----~----~~~~~ig~d 691 (721)
.|++|+++|+++||+++|||+++++|||.+.+. +++.+++.. +||+||+.. .|+++.+ . .+..++|++
T Consensus 512 ~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~--~~~~~~~~~-vvvvEe~~~~GG~G~~v~~~l~~~~~~~v~~~g~~ 588 (616)
T 3mos_A 512 EALAAAELLKKEKINIRVLDPFTIKPLDRKLIL--DSARATKGR-ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVN 588 (616)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSEEESCCHHHHH--HHHHHTTTE-EEEEEEEESTTSHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHH--HHHHhcCCE-EEEEcCCCCCcCHHHHHHHHHHhcCCCCEEEEeCC
Confidence 999999999999999999999999999999874 455555224 599999976 5676543 1 245689998
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 004970 692 RFGASAPAGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 692 ~f~~~g~~~~l~~~~gl~~e~I~~~i~~ 719 (721)
.|+.+|++++|++++|||+++|+++|++
T Consensus 589 ~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 616 (616)
T 3mos_A 589 RVPRSGKPAELLKMFGIDRDAIAQAVRG 616 (616)
T ss_dssp SCCCCSCHHHHHHHTTCSHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 8999999999999999999999999863
No 12
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=4.7e-93 Score=844.23 Aligned_cols=615 Identities=22% Similarity=0.245 Sum_probs=486.6
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhC------CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCe
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~------~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~ 143 (721)
..++...++.....+.++-++++++||+++++||.+++ +||+|+++|++||+++||+++|+.+ ++| .++|
T Consensus 60 l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~-~~~--~~~D- 135 (886)
T 2qtc_A 60 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRAR-NEQ--DGGD- 135 (886)
T ss_dssp SCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCC-CSS--SCCC-
T ss_pred hhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCC-CCC--CCCC-
Confidence 45566666666677777444899999999999999988 8999999999999999999987754 344 6889
Q ss_pred EEEcCCcchHHHHHHHHHhCCC----------------------------CcccCccccchhHHHHHHHHHHHHHhhhhc
Q 004970 144 FVLSAGHGCMLQYALLHLAGYD----------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARY 195 (721)
Q Consensus 144 ~V~s~Gh~~~~~y~~l~l~G~~----------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~ 195 (721)
||+|+||++|.+|++++++|+. ++++++|+||+|++.|+|+|+|.+++.+++
T Consensus 136 ~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~ 215 (886)
T 2qtc_A 136 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 215 (886)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999962 278899999999999999999999865443
Q ss_pred CCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEEEe
Q 004970 196 NKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV 273 (721)
Q Consensus 196 ~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v 273 (721)
.. ...+++|||++|||+++||++|||+++|++++|+|+|||+|||+++|++++.. ...+++.++|+++||+++.|
T Consensus 216 ~~---~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v 292 (886)
T 2qtc_A 216 LK---DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292 (886)
T ss_dssp SC---CCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred cc---cCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEE
Confidence 21 12488999999999999999999999999999999999999999999999875 35678999999999999998
Q ss_pred c--------------------------------------------------------------------cCCCCHHHHHH
Q 004970 274 K--------------------------------------------------------------------NGNTGYDDIRA 285 (721)
Q Consensus 274 ~--------------------------------------------------------------------dG~~d~~~l~~ 285 (721)
+ ||| |+.+|++
T Consensus 293 ~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGh-D~~~l~~ 371 (886)
T 2qtc_A 293 MWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGH-DPKKIYA 371 (886)
T ss_dssp CBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGG-CHHHHHH
T ss_pred ecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCC-CHHHHHH
Confidence 5 799 9999999
Q ss_pred HHHHHHhcCCCCEEEEEEEeeccCCCCC-CCCCcccCC-CCChhhHHHHHHhcCCCC-------CCCCCchhhHHHHHHH
Q 004970 286 AIKEAKAVTDKPTLIRVTTTIGFGSPNK-ANSYSVHGS-ALGAKEVDATRKNLGWPY-------EPFHVPEDVKKHWSRH 356 (721)
Q Consensus 286 al~~a~~~~~~P~lI~~~T~kg~G~~~~-~~~~~~H~~-~~~~~~~~~~~~~l~~~~-------~p~~v~~ev~~~~~~~ 356 (721)
|+++|++..++|++|+++|+||+|++++ +++..||+. +++.++++.++++++|+. .||.++.+....++..
T Consensus 372 a~~~A~~~~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~ 451 (886)
T 2qtc_A 372 AFKKAQETKGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYL 451 (886)
T ss_dssp HHHHHHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHH
T ss_pred HHHHHHHcCCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHH
Confidence 9999987446999999999999999854 778899997 789999999999999975 2788777654434322
Q ss_pred HhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccc-----cCC---CCC----CCCcchhHHHHHHHHHHHH
Q 004970 357 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK-----ALP---TYT----PESPAEATRNLSQTCLNAL 424 (721)
Q Consensus 357 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~-----~~p---~~~----~~~~~~~~r~a~~~~L~~l 424 (721)
.+++ ..+.+..|..... .+| .|. ...+..+||++++++|.++
T Consensus 452 ~~r~--------------------------~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l 505 (886)
T 2qtc_A 452 HAQR--------------------------QKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVM 505 (886)
T ss_dssp HHHH--------------------------HHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHH
T ss_pred HHHH--------------------------HHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHH
Confidence 1110 0122222321100 112 221 1124579999999999999
Q ss_pred HHhC---CCeEEEeccCCC---------cccchhcccccCc----------ccCCCCccccCCchHHHH-H---HHHHHH
Q 004970 425 AKTL---PGLLGGSADLAS---------SNMTLLKMFGDFQ----------KDTPEERNVRFGVREHGM-G---AICNGI 478 (721)
Q Consensus 425 ~~~~---p~vv~~saDl~~---------s~~~~~~~~~~f~----------~~~~p~R~~~~GIaE~~~-v---g~aaGl 478 (721)
++++ |+|+++++|+.. |++++..+...|. ++.||+||||+||+||+| + |+|+||
T Consensus 506 ~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~Gl 585 (886)
T 2qtc_A 506 LKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSY 585 (886)
T ss_dssp TTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHH
T ss_pred HhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHH
Confidence 9988 999999999643 3433322334453 237999999999999995 6 799999
Q ss_pred HhcCCCCccEEEEchhH-HHhHHHHHHHh-hhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHH
Q 004970 479 ALHSPGLIPYCATFFVF-TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 556 (721)
Q Consensus 479 A~~G~~~~Piv~~~~~F-~~r~~dqir~~-a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 556 (721)
|++|.+++||+.+|++| ++|++|||++. ++++.+|++.++..+.++|+||+|||+++|+++||+||||+|++|+|++|
T Consensus 586 A~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E 665 (886)
T 2qtc_A 586 STNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYE 665 (886)
T ss_dssp HHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHH
T ss_pred HhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHH
Confidence 99994479999999999 89999998875 89999999988766667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc----EEEEEcCCC--C--CCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHH
Q 004970 557 TAGAYKVAVANRKRP----SILALSRQK--L--PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEE 628 (721)
Q Consensus 557 ~~~~l~~a~~~~~~P----~~Irl~r~~--~--~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~ 628 (721)
++.+|++|+++.++| ++||++|.+ + |.++.+..+.+..|.|++++.. ++++||+||++|++|++|++|+++
T Consensus 666 ~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga~vlr~g~-~~~~dVtLia~G~~v~~al~AAe~ 744 (886)
T 2qtc_A 666 VAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIE-GSKGKVQLLGSGSILRHVREAAEI 744 (886)
T ss_dssp HHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHHHHTCEEEEEEC-CSSEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcchhhhccCceEEEEecC-CCCCCEEEEeCcHHHHHHHHHHHH
Confidence 999999999865789 999999965 4 4444322233544556665420 013799999999999999999999
Q ss_pred HHhC-CCceEEEecCchhhhHHHHHH----------------HhhhhcccCCceEEEEcccc---cccchhhhc-CCceE
Q 004970 629 LRKG-GKAVRVVSFVSWELFDEQSDA----------------YKESVLPAAVSARVSIEAGS---TFGWEKIVG-SKGKA 687 (721)
Q Consensus 629 L~~~-Gi~~~VI~~~sl~pld~~~~~----------------~~~~v~~~~~~~~v~vE~~~---~~G~~~~v~-~~~~~ 687 (721)
|+++ ||+++|||++|++|||++++. |++++++. .. +|++|++. ..+|.+++. .++..
T Consensus 745 L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~-vVa~ed~~~g~~~~~~~~~~~~~~~~ 822 (886)
T 2qtc_A 745 LAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-AP-AVASTDYMKLFAEQVRTYVPADDYRV 822 (886)
T ss_dssp HHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SC-EEEECSSCTHHHHTTGGGCCSSCEEE
T ss_pred HhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CC-EEEEEecccchHHHHHHHcCCCCeEE
Confidence 9988 999999999999999987532 44566655 34 48999854 345777776 67788
Q ss_pred EEeccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 688 IGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 688 ig~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|+|.|+.+|++++|+++||||+++|+++|+++|
T Consensus 823 lG~D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L 856 (886)
T 2qtc_A 823 LGTDGFGRSDSRENLRHHFEVDASYVVVAALGEL 856 (886)
T ss_dssp ECCCSCCCCCCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763
No 13
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.6e-87 Score=782.15 Aligned_cols=529 Identities=23% Similarity=0.320 Sum_probs=447.5
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCC
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~G 149 (721)
..++..+++++.++..+ |++++++||..+++++.+ ++||+++++|+++++.+||+. |+| ++|+||+|+|
T Consensus 13 l~~i~~p~d~~~l~~~~-l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~v~l~~aL~~~---~~~------~~D~~v~~~G 81 (629)
T 2o1x_A 13 LDQIHGPKDLKRLSREQ-LPALTEELRGEIVRVCSR-GGLHLASSLGAVDIITALHYV---LDS------PRDRILFDVG 81 (629)
T ss_dssp GGGCSSHHHHTTSCGGG-HHHHHHHHHHHHHHHHTT-SSSCHHHHHHTHHHHHHHHHH---SCT------TTSEEEESSS
T ss_pred hhhCCChhhhhhCCHHH-HHHHHHHHHHHHHHHHHh-cCCcCCCchhHHHHHHHHHhh---cCC------CCCeEEecCc
Confidence 44566677777777766 889999999999999987 899999999999999999986 664 7999999999
Q ss_pred cchHHHHHHHHHhCCC----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 150 HGCMLQYALLHLAGYD----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 150 h~~~~~y~~l~l~G~~----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|++ |++++++|+. ++.+.+|+||+|+|+|+|+|+|.++++ .+++|
T Consensus 82 H~~---y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~----------~~~~V 148 (629)
T 2o1x_A 82 HQA---YAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQG----------KDFHV 148 (629)
T ss_dssp TTC---HHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------CCCCE
T ss_pred hHH---HHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhC----------CCCeE
Confidence 999 7887777751 246789999999999999999998765 27899
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc---cc-----------------------c----
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA---FT-----------------------E---- 257 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~---~~-----------------------~---- 257 (721)
||++|||++++|++||||++|+++++ |+++|+|||+|+++++++.. .. .
T Consensus 149 v~v~GDG~~~~G~~~EaL~~A~~~~~-pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~ 227 (629)
T 2o1x_A 149 AAVIGDGSLTGGMALAALNTIGDMGR-KMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLAD 227 (629)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCC-SEEEEEEECSBSSSBCCSSHHHHC-----------------------------
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCC-CEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999996 79999999999999877511 00 0
Q ss_pred ------c-H------H--HHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCCC-CCCccc
Q 004970 258 ------N-V------D--KRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKA-NSYSVH 320 (721)
Q Consensus 258 ------~-~------~--~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~~-~~~~~H 320 (721)
+ + . ++|++|||+++ .| ||| |++++.+++++|++ .++|++||++|.||+|+++++ +..+||
T Consensus 228 ~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~v-dG~-d~~~l~~al~~A~~-~~~P~lI~v~t~kg~G~~~~e~~~~~~H 304 (629)
T 2o1x_A 228 FMSRAKNSTRHFFDPASVNPFAAMGVRYVGPV-DGH-NVQELVWLLERLVD-LDGPTILHIVTTKGKGLSYAEADPIYWH 304 (629)
T ss_dssp ----------------CCCTTGGGTCEEEEEE-ESS-CHHHHHHHHHHHTT-SSSEEEEEEECCTTTTCHHHHHCTTGGG
T ss_pred HHHHHHHHHHhhcCcccchHHHhcCCeEEeeE-CCc-CHHHHHHHHHHHHh-cCCCEEEEEEEecCCCCChhHcCCcccc
Confidence 3 2 3 78999999999 66 999 99999999999987 789999999999999999774 556999
Q ss_pred CCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCccccc
Q 004970 321 GSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKA 400 (721)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~ 400 (721)
+.+ ||.++++. .
T Consensus 305 ~~~------------------~f~~~~~~-------------------------------------------~------- 316 (629)
T 2o1x_A 305 GPA------------------KFDPATGE-------------------------------------------Y------- 316 (629)
T ss_dssp SCC------------------SBCTTTCC-------------------------------------------B-------
T ss_pred cCc------------------cCCcCcCc-------------------------------------------c-------
Confidence 854 22221110 0
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHh
Q 004970 401 LPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 480 (721)
Q Consensus 401 ~p~~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~ 480 (721)
+. .. ..+++++++++|.+++++||+++++++|+.++.+ +..|++ +||+||||+||+|++|+++|+|||+
T Consensus 317 -~~---~~-~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~-----~~~f~~-~~~~r~~~~gIaE~~~~~~a~G~A~ 385 (629)
T 2o1x_A 317 -VP---SS-AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSG-----LVEFSR-VHPHRYLDVGIAEEVAVTTAAGMAL 385 (629)
T ss_dssp -CC---CC-CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-----CHHHHH-HCGGGEEECCSCHHHHHHHHHHHHH
T ss_pred -cc---cc-hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcC-----hHHHHH-hcCcceEeccccHHHHHHHHHHHHH
Confidence 00 01 3578999999999999999999999999966543 346766 7999999999999999999999999
Q ss_pred cCCCCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHH
Q 004970 481 HSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 559 (721)
Q Consensus 481 ~G~~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 559 (721)
.| ++||+++|++|++|++|||++ +|++++||+++++++|+ +|+||+|||+++|+++||+||||+|++|+|++|++.
T Consensus 386 ~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~ 462 (629)
T 2o1x_A 386 QG--MRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRG 462 (629)
T ss_dssp TT--CEEEEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHH
T ss_pred cC--CEEEEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHH
Confidence 99 699999999999999999765 69999999999999998 689999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEE
Q 004970 560 AYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVV 639 (721)
Q Consensus 560 ~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI 639 (721)
++++|++. ++|++||++|+..+.++.+..+.+++|++.++++ |.|++||++|++++.|++|++.|+ +++||
T Consensus 463 ~~~~a~~~-~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~~~----g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi 533 (629)
T 2o1x_A 463 MLKYAQTH-DGPFAIRYPRGNTAQVPAGTWPDLKWGEWERLKG----GDDVVILAGGKALDYALKAAEDLP----GVGVV 533 (629)
T ss_dssp HHHHHHHS-SSCEEEECCSSBCCCCCTTCCCCCCTTCCEEEEC----CSSEEEEECHHHHHHHHHHHTTCT----TEEEE
T ss_pred HHHHHHhC-CCCEEEEecCCCCCCCcccccccccCCceEEEee----CCCEEEEEecHHHHHHHHHHHHhc----CCEEE
Confidence 99999974 8999999999987654422234578898666665 689999999999999999999995 89999
Q ss_pred ecCchhhhHHHHHHHhhhhcccCCceEEEEcccccc-cchhhh---------cCCceEEEe-ccCCCCCCHHHHHHHhCC
Q 004970 640 SFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFGI 708 (721)
Q Consensus 640 ~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~-G~~~~v---------~~~~~~ig~-d~f~~~g~~~~l~~~~gl 708 (721)
|++|++|||++.+. ++++.. +.+|++|++... ||+..+ ..+..++|+ |.|+++|+.++|+++||+
T Consensus 534 ~~~~~~Pld~~~i~---~~~~~~-~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl 609 (629)
T 2o1x_A 534 NARFVKPLDEEMLR---EVGGRA-RALITVEDNTVVGGFGGAVLEALNSMNLHPTVRVLGIPDEFQEHATAESVHARAGI 609 (629)
T ss_dssp ECCEEESCCHHHHH---HHHHHC-SEEEEEEEEESSSSHHHHHHHHHHHTTCCCEEEEEEECSSCCCSCCHHHHHHHHTC
T ss_pred eeCCCCCCcHHHHH---HHHhhC-CcEEEEecCCCCCCHHHHHHHHHHHhCCCCCeEEEeeCCcCCCCCCHHHHHHHHCc
Confidence 99999999998763 333332 335999999874 476443 124568999 899999999999999999
Q ss_pred CHHHHHHHHHHhC
Q 004970 709 TAEAVITAAKEVC 721 (721)
Q Consensus 709 ~~e~I~~~i~~ll 721 (721)
|+++|+++|++++
T Consensus 610 ~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 610 DAPAIRTVLAELG 622 (629)
T ss_dssp SHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999864
No 14
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-87 Score=776.91 Aligned_cols=531 Identities=19% Similarity=0.280 Sum_probs=430.6
Q ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCC
Q 004970 70 PIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149 (721)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~G 149 (721)
..++..+++++.++..+ |++++++||..+++++.+ ++||+++++|+++++++||+. ++| ++|+||+|+|
T Consensus 11 l~~i~~p~d~~~l~~~~-l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~---~~~------~~D~~v~~~g 79 (621)
T 2o1s_A 11 LALVDSTQELRLLPKES-LPKLCDELRRYLLDSVSR-SSGHFASGLGTVELTVALHYV---YNT------PFDQLIWDVG 79 (621)
T ss_dssp GGGCSSHHHHTTSCGGG-HHHHHHHHHHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHH---SCT------TTSEEEESSS
T ss_pred hhhcCChHHhhhCCHHH-HHHHHHHHHHHHHHHHhh-cCCCcCCChhHHHHHHHHHhc---cCC------CCCEEEEeCc
Confidence 34556677777777666 888999999999999986 899999999999999999987 664 7999999999
Q ss_pred cchHHHHHHHHHhCCC----------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEE
Q 004970 150 HGCMLQYALLHLAGYD----------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYT 207 (721)
Q Consensus 150 h~~~~~y~~l~l~G~~----------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~v 207 (721)
|++ |+++.++|+. +.++++|+||+|+|+|+|+|+|.++++ .+++|
T Consensus 80 H~~---y~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~----------~~~~V 146 (621)
T 2o1s_A 80 HQA---YPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEG----------KNRRT 146 (621)
T ss_dssp TTC---HHHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------SCCCE
T ss_pred hHH---HHHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhC----------CCCeE
Confidence 999 7888877741 345789999999999999999998775 27899
Q ss_pred EEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccc------------------cc------------
Q 004970 208 YVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF------------------TE------------ 257 (721)
Q Consensus 208 v~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~------------------~~------------ 257 (721)
||++|||++++|++||||++|+++++ |+++|+|||+|+++++++... ..
T Consensus 147 v~v~GDG~~~~G~~~EaL~~A~~~~~-pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~ 225 (621)
T 2o1s_A 147 VCVIGDGAITAGMAFEAMNHAGDIRP-DMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKEL 225 (621)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCC-SEEEEEEECC-------------------------------------------
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCC-CEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999996 799999999999998765210 00
Q ss_pred -----cH-------HHHHhhCCCeEE-EeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCCC-CCCcccCCC
Q 004970 258 -----NV-------DKRFEGLGWHVI-WVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKA-NSYSVHGSA 323 (721)
Q Consensus 258 -----~~-------~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~~-~~~~~H~~~ 323 (721)
+. .++|++|||+++ .| ||| |++++.+++++|++ .++|++||++|.||+|+++++ ++.+||+.+
T Consensus 226 ~~r~~~~~~~~~~p~~~~ea~G~~~~g~v-dG~-d~~~l~~al~~A~~-~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~ 302 (621)
T 2o1s_A 226 LKRTEEHIKGMVVPGTLFEELGFNYIGPV-DGH-DVLGLITTLKNMRD-LKGPQFLHIMTKKGRGYEPAEKDPITFHAVP 302 (621)
T ss_dssp -------------CHHHHHHTTCEEEEEE-ETT-CHHHHHHHHHHHHH-SCSEEEEEEECCCTTCCCCC-----------
T ss_pred HHHHHHHhhhccChhhHHHHCCCeEeeee-CCC-CHHHHHHHHHHHHH-cCCCEEEEEEEecccCCChhhcCchhccCCC
Confidence 11 478999999999 66 999 99999999999998 789999999999999999884 455899853
Q ss_pred CChhhHHHHHHhcCCCCCCCCCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCC
Q 004970 324 LGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPT 403 (721)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~ 403 (721)
||.++++. +. .
T Consensus 303 ------------------~f~~~~~~-----------------------------~~---------~------------- 313 (621)
T 2o1s_A 303 ------------------KFDPSSGC-----------------------------LP---------K------------- 313 (621)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------CCCCCcCc-----------------------------cc---------c-------------
Confidence 22221110 00 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCCCCccccCCchHHHHHHHHHHHHhcCC
Q 004970 404 YTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 483 (721)
Q Consensus 404 ~~~~~~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~ 483 (721)
......+++++++++|.+++++||+++++++|+.++.+ +..|++ +||+||||+||+|++|+++|+|||+.|
T Consensus 314 --~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~-----~~~~~~-~~~~r~~~~gIaE~~~~~~a~G~A~~G- 384 (621)
T 2o1s_A 314 --SSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSG-----MVEFSR-KFPDRYFDVAIAEQHAVTFAAGLAIGG- 384 (621)
T ss_dssp ------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-----CHHHHH-HCTTTEEECCSCHHHHHHHHHHHHHTT-
T ss_pred --cccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcC-----hHHHHH-hCCCceEecCcCHHHHHHHHHHHHHCC-
Confidence 00113578999999999999999999999999965543 345766 799999999999999999999999999
Q ss_pred CCccEEEEchhHHHhHHHHHHH-hhhcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHHHHH
Q 004970 484 GLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 562 (721)
Q Consensus 484 ~~~Piv~~~~~F~~r~~dqir~-~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~ 562 (721)
++||+++|++|++|++|||+. +|++++||+++++++|+ +|+||+|||+.+|+++||++|||+|++|+|++|++.+++
T Consensus 385 -~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~ 462 (621)
T 2o1s_A 385 -YKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY 462 (621)
T ss_dssp -CEEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred -CEEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 699999999999999999765 69999999999999998 689999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEcCCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecC
Q 004970 563 VAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 642 (721)
Q Consensus 563 ~a~~~~~~P~~Irl~r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~ 642 (721)
+|++..++|++||++|+.++..+.+..+.+++|++.++++ |.|++||++|++++.|++| ++||+++|||++
T Consensus 463 ~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~~~----g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~ 533 (621)
T 2o1s_A 463 TGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRR----GEKLAILNFGTLMPEAAKV-----AESLNATLVDMR 533 (621)
T ss_dssp HHHHCCSSCEEEECCSSBCCCCCCCCCCCCCTTCCEEEEC----CSSEEEEEESTTHHHHHHH-----HHHHTCEEEECC
T ss_pred HHHHcCCCCEEEEeCCCCCCCCCCCccccccCCceEEeec----CCCEEEEEecHHHHHHHHH-----cCCCCEEEEecC
Confidence 9997548999999999987654321114578899666665 5899999999999999999 458999999999
Q ss_pred chhhhHHHHHHHhhhhcccCCceEEEEcccccc-cchhhh---------cCCceEEEe-ccCCCCCCHHHHHHHhCCCHH
Q 004970 643 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFGITAE 711 (721)
Q Consensus 643 sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~-G~~~~v---------~~~~~~ig~-d~f~~~g~~~~l~~~~gl~~e 711 (721)
|++|||++.+. ++++.. +.+|++|++... ||+..+ ..+..++|+ |.|+++|+.++|+++||+|++
T Consensus 534 ~~~P~d~~~i~---~~~~~~-~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~ 609 (621)
T 2o1s_A 534 FVKPLDEALIL---EMAASH-EALVTVEENAIMGGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAA 609 (621)
T ss_dssp EEESCCHHHHH---HHHHHC-SEEEEEEEEESTTSHHHHHHHHHHHTTCCCCEEEEEECSSCCCCSCHHHHHHHTTCSHH
T ss_pred ccCCCCHHHHH---HHHccC-CeEEEEECCCCCCCHHHHHHHHHHhcCCCCCeEEEecCCcCCCCCCHHHHHHHHCcCHH
Confidence 99999998763 333332 335999999874 576433 235568999 899999999999999999999
Q ss_pred HHHHHHHHhC
Q 004970 712 AVITAAKEVC 721 (721)
Q Consensus 712 ~I~~~i~~ll 721 (721)
+|+++|+++|
T Consensus 610 ~I~~~i~~~l 619 (621)
T 2o1s_A 610 GMEAKIKAWL 619 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.4e-82 Score=740.39 Aligned_cols=570 Identities=16% Similarity=0.214 Sum_probs=443.5
Q ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCe-EEEcCCcchHHHHHHHHHhCC---------------
Q 004970 101 DAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGY--------------- 164 (721)
Q Consensus 101 ~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~-~V~s~Gh~~~~~y~~l~l~G~--------------- 164 (721)
++|+++++||+|++||++++ ++++..+++.+ +||| ||+|+||++|.+|+.+++.|+
T Consensus 75 d~vk~a~sGH~G~~~g~a~i-y~~~~~~~~~~-------~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~L 146 (845)
T 3ahc_A 75 DDVKHRLVGHWGTTPGLNFL-LAHINRLIADH-------QQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGL 146 (845)
T ss_dssp GGBCSSCCSCCTTHHHHHHH-HHHHHHHHHHH-------TBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHH
T ss_pred HHhhhcCCCCCCCCHHHHHH-HHHHHHhcccC-------CCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHH
Confidence 44577889999999999999 66665555543 7999 799999999999999999886
Q ss_pred ---------------------CCcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh---
Q 004970 165 ---------------------DSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--- 220 (721)
Q Consensus 165 ---------------------~gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~--- 220 (721)
+|++.++|+||||++.|+|||+.. + +.+|||++||||.++|.
T Consensus 147 k~lfrqfs~~gg~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~~---------~-----~~~v~~~~GDGe~e~GsLAg 212 (845)
T 3ahc_A 147 QKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAVMNN---------P-----SLFVPCIIGDGEAETGPLAT 212 (845)
T ss_dssp HHHHHHBTCTTSBCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTTC---------T-----TCEEEEEEETTGGGSHHHHH
T ss_pred HHHHHhccCCCCCCCCCCCCCCCeecCCCCccchHhHHhhhhhcC---------C-----CCeEEEEECCCchhhhcchh
Confidence 178899999999999999999532 2 78999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEECCCccccccccc--cccccHHHHHhhCCCeEE-EeccC-CC-CHHHHHHHHHHH-----
Q 004970 221 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVI-WVKNG-NT-GYDDIRAAIKEA----- 290 (721)
Q Consensus 221 ~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~--~~~~~~~~~~~a~G~~~~-~v~dG-~~-d~~~l~~al~~a----- 290 (721)
+||+.+++..++|+||++|+|+|+++|++++.. ...+++.++|++|||+++ .| || |. |+++|.++|.++
T Consensus 213 ~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~v-dG~~~~D~~~i~~a~~~al~~~~ 291 (845)
T 3ahc_A 213 GWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFV-AGFDNEDHMSIHRRFAELFETIF 291 (845)
T ss_dssp HGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEE-CSSSSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEe-CCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974 357899999999999999 66 99 54 899988876522
Q ss_pred ----------Hh-cCCCC--EEEEEEEeecc-------CCCCCCCCCcccCCCCCh--hhHHHHHHhcCC--CCCC---C
Q 004970 291 ----------KA-VTDKP--TLIRVTTTIGF-------GSPNKANSYSVHGSALGA--KEVDATRKNLGW--PYEP---F 343 (721)
Q Consensus 291 ----------~~-~~~~P--~lI~~~T~kg~-------G~~~~~~~~~~H~~~~~~--~~~~~~~~~l~~--~~~p---~ 343 (721)
++ ..++| ++|+++|+||+ |.+ .+++.+||+.|++. ++.+.+++.++| +++| |
T Consensus 292 ~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF 370 (845)
T 3ahc_A 292 DEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGSWRAHQVPLASARDTEEHFEVLKGWMESYKPEELF 370 (845)
T ss_dssp HHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTB
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCCccccCCCCCCcccCHHHHHHHhhhccCCCchhcc
Confidence 22 13689 99999999999 995 68889999999976 456667766677 5556 8
Q ss_pred CCchhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCcccccCCCCC-----------CCCcchh
Q 004970 344 HVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT-----------PESPAEA 412 (721)
Q Consensus 344 ~v~~ev~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~-----------~~~~~~~ 412 (721)
.++.++++.|.....++.. ....+|+.. .+.+|..| .+|.+. ++.....
T Consensus 371 ~~~~~~~~~~~~~~~~g~~-----------r~~~~P~~~-------~g~l~~~~--~lp~~~~~~~~~~~~~~~g~~~~~ 430 (845)
T 3ahc_A 371 NADGSIKDDVTAFMPKGEL-----------RIGANPNAN-------GGVIREDL--KLPELDQYEVTGVKEYGHGWGQVE 430 (845)
T ss_dssp CTTSCBCHHHHTTSCCGGG-----------STTTCGGGG-------GGGTCCCC--CCCCGGGGCCTHHHHHCTTEEEEC
T ss_pred CCchHHHHHHHHhCcchHh-----------HhhhCHHhc-------CCcCcccc--CCCChHhhhccccccccCCccchh
Confidence 8888877777654333321 112445432 12233333 222221 1222344
Q ss_pred HHHHHHHHHHHHHHhCCC-eEEEeccCCCcccchh--cc-----cccCc--c----cCCCCccccCCchHHHHHHHHHHH
Q 004970 413 TRNLSQTCLNALAKTLPG-LLGGSADLASSNMTLL--KM-----FGDFQ--K----DTPEERNVRFGVREHGMGAICNGI 478 (721)
Q Consensus 413 ~r~a~~~~L~~l~~~~p~-vv~~saDl~~s~~~~~--~~-----~~~f~--~----~~~p~R~~~~GIaE~~~vg~aaGl 478 (721)
.+.+++++|.++++.+|+ ++++++|+.+|+++.. +. ...|. . ..+.+|||+ ||+||+|+|+++||
T Consensus 431 atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Gl 509 (845)
T 3ahc_A 431 APRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAY 509 (845)
T ss_dssp THHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHH
Confidence 566778999999999999 9999999999987742 22 12221 0 122389999 99999999999999
Q ss_pred HhcCCCCccEEEEchhHH---HhHHHH----HHHh-hhc----CC-cEEEEEecCCcccCCCCCCCCChhhhHHHh----
Q 004970 479 ALHSPGLIPYCATFFVFT---DYMRAA----IRIS-ALC----EA-GVIYVMTHDSIGLGEDGPTHQPIEHLASFR---- 541 (721)
Q Consensus 479 A~~G~~~~Piv~~~~~F~---~r~~dq----ir~~-a~~----~~-pV~~v~t~~g~~~g~dG~THq~~edia~lr---- 541 (721)
|++|+ +||+.+|++|+ +||++| ||++ +++ .. +|++++||+++++|+||+|||+++.+.+++
T Consensus 510 al~G~--~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~ 587 (845)
T 3ahc_A 510 LLTGR--HGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTF 587 (845)
T ss_dssp HHTTC--EEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCC
T ss_pred HhcCC--CCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhc
Confidence 99996 89999999998 799999 9998 765 45 699999999999999999999965555554
Q ss_pred -cCCCcEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCcc--ccccCccEEEe---cC--CCCCCCCEEEE
Q 004970 542 -AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI--DGVEKGAYIIS---DN--SSGNKPDVILI 613 (721)
Q Consensus 542 -~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~Irl~r~~~~~~~~~~~--~~~~~G~~~v~---~~--~~~~g~dvtIv 613 (721)
.+|||+||+|+|++|+..+++.|+++.+.|++++++|+++|+++.... ..+.+|+|++. ++ + +.+||+||
T Consensus 588 ~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~~g--~~~DVvLi 665 (845)
T 3ahc_A 588 NNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWKWASNAENN--DEVQVVLA 665 (845)
T ss_dssp TTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEECSCHHHHHHHHHHSEEECTTTCCCSST--TTCSEEEE
T ss_pred cCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccCCchhhhhhhcCCeEEEEeecccccC--CCCCEEEE
Confidence 569999999999999999999999865555555559999998875431 25789999987 22 2 24899999
Q ss_pred EeChhH-HHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcc-cCCceEEEEccccc---ccchhhh----c--
Q 004970 614 GTGSEL-EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGST---FGWEKIV----G-- 682 (721)
Q Consensus 614 a~G~~v-~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~-~~~~~~v~vE~~~~---~G~~~~v----~-- 682 (721)
++|+++ .+|++|+++|+++||+++||||+++.+++.+..+ ...+. .....++++|++.. .|+++.| .
T Consensus 666 AtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~--~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r 743 (845)
T 3ahc_A 666 SAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENN--DEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDR 743 (845)
T ss_dssp EESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTC--TTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTS
T ss_pred EeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccc--ccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhC
Confidence 999775 5699999999999999999999999555543211 00111 01122378888875 4555433 1
Q ss_pred ---CCceEEEeccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 683 ---SKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 683 ---~~~~~ig~d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.+..++|+.+|+.+|++.+|+++||||.++|++++++++
T Consensus 744 ~~~~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 744 PNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp TTGGGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred CCCceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 234678997799999999999999999999999998753
No 16
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.9e-55 Score=521.42 Aligned_cols=501 Identities=15% Similarity=0.113 Sum_probs=341.6
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCcc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHIS 246 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~~ 246 (721)
.+++||+++|.|+|+|+|.++.+...++++....+..+||++|||+| +||.+||+||+|+.++|+ |+++||+||+|+
T Consensus 243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g 322 (868)
T 2yic_A 243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG 322 (868)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB
T ss_pred CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc
Confidence 46789999999999999999775322221112237899999999997 899999999999999997 799999999999
Q ss_pred ccccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCC
Q 004970 247 IDGDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGS 322 (721)
Q Consensus 247 i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 322 (721)
+++++.. ...+++.+++++|||+++.| ||| |++++.+++++|.+ ..++|++|++.|+|++||+..+++ .+
T Consensus 323 ~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~-D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p-~~--- 396 (868)
T 2yic_A 323 FTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGD-DPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP-SM--- 396 (868)
T ss_dssp TTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCG-GG---
T ss_pred cccCccccccccCHHHHHHhCCCcEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCccccc-cc---
Confidence 9987542 23355677899999999998 999 99999999998864 257999999999999999987543 22
Q ss_pred CCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhc-C----C-CCC
Q 004970 323 ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS-G----Q-LPA 395 (721)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~----~-~p~ 395 (721)
..+++++.+.+ ..+| +..|++ ++++|...++++.+..+++++...+..+..+.... . + +..
T Consensus 397 -~~p~~~~~~~~----~~dP-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~ 464 (868)
T 2yic_A 397 -TQPYMYDVIDT----KRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEA 464 (868)
T ss_dssp -TCHHHHHHHTT----CCCH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred -CChHHHHHHHh----CCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Confidence 13444443221 1232 234444 23344333333333322222111110000000000 0 0 000
Q ss_pred cccc---------------------cCC-CCCCCCc---chhHHH----------HHHHHH--HHHHHhCCCeEEEeccC
Q 004970 396 GWEK---------------------ALP-TYTPESP---AEATRN----------LSQTCL--NALAKTLPGLLGGSADL 438 (721)
Q Consensus 396 ~~~~---------------------~~p-~~~~~~~---~~~~r~----------a~~~~L--~~l~~~~p~vv~~saDl 438 (721)
.|.. ..| .|..... ....|. +++++| ..|++++++|+++++|+
T Consensus 465 ~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv 544 (868)
T 2yic_A 465 DQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDT 544 (868)
T ss_dssp -------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred ccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 1110 111 2221111 113342 333332 25689999999999999
Q ss_pred CCccc-------------chhcccccC------cccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHh
Q 004970 439 ASSNM-------------TLLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDY 498 (721)
Q Consensus 439 ~~s~~-------------~~~~~~~~f------~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r 498 (721)
+.++. ..+..+..| +++.+|+||+|+||+|++++|+++|||+.|...+|++ .+|++|+.+
T Consensus 545 ~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~ 624 (868)
T 2yic_A 545 QRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNG 624 (868)
T ss_dssp TTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGG
T ss_pred CccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhh
Confidence 86522 112344566 5546899999999999999999999999995234555 589999988
Q ss_pred H---HHHHHHhh----hcCCcEEEEEecCCcccCCCCCCCCC--hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc-C
Q 004970 499 M---RAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-R 568 (721)
Q Consensus 499 ~---~dqir~~a----~~~~pV~~v~t~~g~~~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~ 568 (721)
+ +||++..+ ++++||++++.|.+ .| +|++|++ +|++..|+++|||+|++|+|+.|++.+|+.++.. .
T Consensus 625 AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~--~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~ 701 (868)
T 2yic_A 625 AQSIIDEFISSGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGI 701 (868)
T ss_dssp GHHHHHHTTTTHHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEecCCC--CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCC
Confidence 7 99987653 56999999997655 56 9999987 7888888999999999999999999999998864 2
Q ss_pred CCcEEEEEcCCCCC------CCC--CCccccccCccEEE---ecCCCCCCCCE--EEEEeChhHHHHHHHHHHHHhCC-C
Q 004970 569 KRPSILALSRQKLP------HLA--GTSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-K 634 (721)
Q Consensus 569 ~~P~~Irl~r~~~~------~~~--~~~~~~~~~G~~~v---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i 634 (721)
++|++|++||.-+. .+. .+..+..++|+..+ +++ |.|| +||++|.+ ..++++++ +++| +
T Consensus 702 ~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i 774 (868)
T 2yic_A 702 QRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENRE 774 (868)
T ss_dssp CCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCC----GGGCCEEEEECSTH-HHHHHHHH--HHHTCT
T ss_pred CCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeeccccc----CCceeEEEEEecHH-HHHHHHHH--HhCCCC
Confidence 49999999886321 110 00011125676654 343 5899 99999998 67776665 5678 9
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccCCc-eEEEEccccc-ccchhhh-----------cCCceEEEe-ccCCC-CCCH
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGA-SAPA 699 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~~~-~~v~vE~~~~-~G~~~~v-----------~~~~~~ig~-d~f~~-~g~~ 699 (721)
+++|||+++|+|||.+++. +++.+++.. -+|++||+.. .|+++++ ..+..++|. |.|.+ +|..
T Consensus 775 ~v~VIdl~~l~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~ 852 (868)
T 2yic_A 775 DVAIVRIEQLAPLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 852 (868)
T ss_dssp TEEEEEECEEESCCHHHHH--HHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CEEEEEeeecCCCCHHHHH--HHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCH
Confidence 9999999999999999764 566666531 1377877766 5655433 235678999 67776 4554
Q ss_pred H
Q 004970 700 G 700 (721)
Q Consensus 700 ~ 700 (721)
+
T Consensus 853 ~ 853 (868)
T 2yic_A 853 K 853 (868)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.8e-54 Score=515.59 Aligned_cols=504 Identities=12% Similarity=0.066 Sum_probs=339.6
Q ss_pred cCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCc
Q 004970 169 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHI 245 (721)
Q Consensus 169 ~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~ 245 (721)
+..+++|+++|+|+|+|+|.++++..+ +..+..+||++|||++ ++|++||+||+|+.++++ .+++||+||+|
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~-----~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~ 392 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEP-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV 392 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSC-----CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-
T ss_pred ccCcccccccCHHHHHHHHHHhhcccc-----CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCc
Confidence 467899999999999999998764211 1137899999999998 899999999999999994 17788889999
Q ss_pred cccc-ccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCccc
Q 004970 246 SIDG-DTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVH 320 (721)
Q Consensus 246 ~i~~-~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H 320 (721)
++++ +++.. ...++.+++++|||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|++||...+. ..+
T Consensus 393 ~ist~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~-D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~-~~y- 468 (933)
T 2jgd_A 393 GFTTSNPLDARSTPYCTDIGKMVQAPIFHV-NAD-DPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADE-PSA- 468 (933)
T ss_dssp --------------CGGGGGGTTTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------
T ss_pred cccCCCHHhcccchhHHHHHHHcCCCEEEE-CCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccc-hhh-
Confidence 9999 77643 3456788899999999998 999 99999999998874 25789999999999999987653 222
Q ss_pred CCCCChhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhcC-----CCC
Q 004970 321 GSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSG-----QLP 394 (721)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~p 394 (721)
.++++++.+++. .+ ....|++ ++.+|...+++|.+..+++++. +++.... +.|
T Consensus 469 ---r~~~e~~~~~~~----~d-------Pi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~-------v~~a~~~A~~~~p~~ 527 (933)
T 2jgd_A 469 ---TQPLMYQKIKKH----PT-------PRKIYADKLEQEKVATLEDATEMVNLYRDA-------LDAGDCVVAEWRPMN 527 (933)
T ss_dssp ----CCTTHHHHHTS----CC-------HHHHHHHHHHTTTSSCHHHHHHHHHHHHHH-------HHHTSCCCTTEECCC
T ss_pred ---CCHHHHHHHHcc----CC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCC
Confidence 245666666532 12 2345555 3445655555665555544321 1111110 001
Q ss_pred ---CcccccCC----------------------------CCCC----------------CCcchhHHHHHHHHHHHHHHh
Q 004970 395 ---AGWEKALP----------------------------TYTP----------------ESPAEATRNLSQTCLNALAKT 427 (721)
Q Consensus 395 ---~~~~~~~p----------------------------~~~~----------------~~~~~~~r~a~~~~L~~l~~~ 427 (721)
..|....+ .|.. +....++..+.+.+|.+++++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~ 607 (933)
T 2jgd_A 528 MHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDE 607 (933)
T ss_dssp GGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTT
T ss_pred cchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc
Confidence 11221100 0100 001234456777899999999
Q ss_pred CCCeEEEeccCCCcc-------------cchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccEEE-Ec
Q 004970 428 LPGLLGGSADLASSN-------------MTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TF 492 (721)
Q Consensus 428 ~p~vv~~saDl~~s~-------------~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~-~~ 492 (721)
+++|+++++|++.++ +..+..+..|++ +| |+||+|+||+|++++|+|+|||+.|...+||+. +|
T Consensus 608 ~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~-~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf 686 (933)
T 2jgd_A 608 GIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHN-GQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQF 686 (933)
T ss_dssp TCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCT-TCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-C
T ss_pred CCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHH-HcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999997641 212235667877 78 999999999999999999999999951229885 89
Q ss_pred hhHHH---hHHHHHHHh--h--hcCCcEEEEEecCCcccCCCCCCCCC--hhhhHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 004970 493 FVFTD---YMRAAIRIS--A--LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKV 563 (721)
Q Consensus 493 ~~F~~---r~~dqir~~--a--~~~~pV~~v~t~~g~~~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~ 563 (721)
++|++ |++|||+.. | .+++||++++.| |+ .| .|++||+ +|++..++++|||+|++|+|+.|+..+|++
T Consensus 687 ~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~-~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~ 763 (933)
T 2jgd_A 687 GDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GY-EG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRR 763 (933)
T ss_dssp GGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CC-SS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CC-CC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHH
Confidence 99997 999998754 4 369999999976 43 34 5999998 555555567799999999999999999999
Q ss_pred HH-HcCCCcEEEEEcCCCCCC---CC-----CCccccccCccEEEecCCCCCCCCE--EEEEeChhHHHHHHHHHHHHhC
Q 004970 564 AV-ANRKRPSILALSRQKLPH---LA-----GTSIDGVEKGAYIISDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKG 632 (721)
Q Consensus 564 a~-~~~~~P~~Irl~r~~~~~---~~-----~~~~~~~~~G~~~v~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~ 632 (721)
++ +..++|++|++||..... .+ .+..+.+++|++.+++ |.|| +|+++|.+...+++|++.|+++
T Consensus 764 a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-----g~dV~~vI~~~G~v~~~l~aa~~~l~~~ 838 (933)
T 2jgd_A 764 QALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-----PKGVKRVVMCSGKVYYDLLEQRRKNNQH 838 (933)
T ss_dssp HHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-----GGGCCEEEEECTTHHHHHHHHHHHTTCC
T ss_pred HHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-----cCcceEEEEEchHHHHHHHHHHHHcccC
Confidence 85 434799999999865321 11 0012334567665444 3688 5666666656666666888654
Q ss_pred CCceEEEecCchhhhHHHHHHHhhhhcccCC-ceEEEEccccc-ccchhhhc----------CCceEEEe-ccCCC-CCC
Q 004970 633 GKAVRVVSFVSWELFDEQSDAYKESVLPAAV-SARVSIEAGST-FGWEKIVG----------SKGKAIGI-DRFGA-SAP 698 (721)
Q Consensus 633 Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~-~~~v~vE~~~~-~G~~~~v~----------~~~~~ig~-d~f~~-~g~ 698 (721)
+++|||+++++|||.+.+. +++.+++. +.+|++||+.. .|+++++. .+..++|. |.|.+ .|.
T Consensus 839 --~v~VIdl~~l~Pld~e~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g~ 914 (933)
T 2jgd_A 839 --DVAIVRIEQLYPFPHKAMQ--EVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGH 914 (933)
T ss_dssp --SEEEEEECEEESCCHHHHH--HHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCSC
T ss_pred --CeEEEEeeccCCCCHHHHH--HHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcCC
Confidence 8999999999999999763 45555442 14599999877 45655431 23457898 67776 454
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 004970 699 AGKIYKEFGITAEAVITAAKE 719 (721)
Q Consensus 699 ~~~l~~~~gl~~e~I~~~i~~ 719 (721)
. +.+....+.|++++..
T Consensus 915 ~----~~h~~~~~~i~~~a~~ 931 (933)
T 2jgd_A 915 M----SVHQKQQQDLVNDALN 931 (933)
T ss_dssp H----HHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHHHHHhc
Confidence 3 3334566778877653
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.8e-54 Score=523.01 Aligned_cols=501 Identities=15% Similarity=0.112 Sum_probs=342.3
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCcc-ChhhHHHHHHHHHhcCCC--eEEEEEECCCcc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHIS 246 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~-~eG~~~Eal~~a~~~~L~--~li~IvddN~~~ 246 (721)
.+|+||+++|.|+|+|+|.++.+..+++++....+..+||++|||++ +||.+||+||+|+.++|+ |+++||+||+|+
T Consensus 488 n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g 567 (1113)
T 2xt6_A 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG 567 (1113)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB
T ss_pred CCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc
Confidence 47899999999999999999876544433333347899999999996 899999999999999997 799999999999
Q ss_pred cccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCC
Q 004970 247 IDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGS 322 (721)
Q Consensus 247 i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 322 (721)
+++++... ...+..+++++|||+++.| ||| |++++++++++|.+ ..++|++|++.|+|++||+..+++ .+
T Consensus 568 ist~~~~~~s~~~~~~~a~a~G~p~~~V-dG~-D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p-~~--- 641 (1113)
T 2xt6_A 568 FTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGD-DPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP-SM--- 641 (1113)
T ss_dssp TTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCG-GG---
T ss_pred cccCccccccccCHHHHHHhcCCcEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCcc-cc---
Confidence 99875422 2345667899999999998 999 99999999998864 257999999999999999987543 22
Q ss_pred CCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHH-HhhhhhhHHHHHHHHHHHHhhChHHHHHHHHHhc-C--C---CCC
Q 004970 323 ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS-G--Q---LPA 395 (721)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~--~---~p~ 395 (721)
..+++++.+++ ..+| ...|++. +++|...++++.+..+++++...+..+..+.... . + +..
T Consensus 642 -~~~~~~~~~~~----~~dp-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~ 709 (1113)
T 2xt6_A 642 -TQPYMYDVIDT----KRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEA 709 (1113)
T ss_dssp -TCHHHHHHHTT----CCCH-------HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred -CChHHHHHHHh----cCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Confidence 23444443321 1232 3345442 3344333333333222222111110000000000 0 0 000
Q ss_pred cccc---------------------cCC-CCCCCC---cchhHHHH------HHHHH------HHHHHhCCCeEEEeccC
Q 004970 396 GWEK---------------------ALP-TYTPES---PAEATRNL------SQTCL------NALAKTLPGLLGGSADL 438 (721)
Q Consensus 396 ~~~~---------------------~~p-~~~~~~---~~~~~r~a------~~~~L------~~l~~~~p~vv~~saDl 438 (721)
.|.. ..| .+.... +....|.. +..++ ..|++++++|+++++|+
T Consensus 710 ~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv 789 (1113)
T 2xt6_A 710 DQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDT 789 (1113)
T ss_dssp -------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred ccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccC
Confidence 1110 111 111100 01122211 22233 35599999999999999
Q ss_pred CCcc-------------cchhcccccC------cccCCCCccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHh
Q 004970 439 ASSN-------------MTLLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDY 498 (721)
Q Consensus 439 ~~s~-------------~~~~~~~~~f------~~~~~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r 498 (721)
+.++ +..+..+..| +++.+|+||+|+||+|++++|+++|||+.|...+|++ .+|++|+++
T Consensus 790 ~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~ 869 (1113)
T 2xt6_A 790 QRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNG 869 (1113)
T ss_dssp TTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGG
T ss_pred CCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhh
Confidence 7643 2223345567 5546899999999999999999999999995334555 589999987
Q ss_pred H---HHHHHHh----hhcCCcEEEEEecCCcccCCCCCCCCC--hhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc-C
Q 004970 499 M---RAAIRIS----ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-R 568 (721)
Q Consensus 499 ~---~dqir~~----a~~~~pV~~v~t~~g~~~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~ 568 (721)
+ +||+... +++++||++++.|.+ .| +|++|++ +|++..|+++|||+|++|+|+.|++.+|+.++.. .
T Consensus 870 aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~--~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~ 946 (1113)
T 2xt6_A 870 AQSIIDEFISSGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGI 946 (1113)
T ss_dssp GHHHHHHTTTTHHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCC--CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccC
Confidence 7 9998664 357999999997655 56 9999998 5665556999999999999999999999998864 2
Q ss_pred CCcEEEEEcCCCCC--C-CCC-----CccccccCccEEE---ecCCCCCCCCE--EEEEeChhHHHHHHHHHHHHhCC-C
Q 004970 569 KRPSILALSRQKLP--H-LAG-----TSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-K 634 (721)
Q Consensus 569 ~~P~~Irl~r~~~~--~-~~~-----~~~~~~~~G~~~v---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i 634 (721)
++|++|++||.-+. . ... +..+..++|+..+ +++ |.|| +||++|.+ ..++++++ +++| +
T Consensus 947 ~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i 1019 (1113)
T 2xt6_A 947 QRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENRE 1019 (1113)
T ss_dssp CCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCC----STTCCEEEEECSTH-HHHHHHHH--HHHTCT
T ss_pred CCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccC----ccccCEEEEEECHH-HHHHHHHH--HhCCCC
Confidence 48999999986321 1 000 0111125676654 344 5899 99999998 77777776 5678 9
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccCCc-eEEEEccccc-ccchhhh-----------cCCceEEEe-ccCCC-CCCH
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGA-SAPA 699 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~~~-~~v~vE~~~~-~G~~~~v-----------~~~~~~ig~-d~f~~-~g~~ 699 (721)
+++|||+++|+|||.+.+. +++.+++.. -+|++||+.. .|+++++ ..+..++|. |.|.+ +|..
T Consensus 1020 ~v~VIdl~~l~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d~~~p~~g~~ 1097 (1113)
T 2xt6_A 1020 DVAIVRIEQLAPLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 1097 (1113)
T ss_dssp TEEEEEESEEESCCHHHHH--HHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CEEEEEeeeecCCCHHHHH--HHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCCcCCCCCCCH
Confidence 9999999999999999774 566666531 1388887766 5655433 235678999 67776 4554
Q ss_pred H
Q 004970 700 G 700 (721)
Q Consensus 700 ~ 700 (721)
+
T Consensus 1098 ~ 1098 (1113)
T 2xt6_A 1098 K 1098 (1113)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.1e-49 Score=434.50 Aligned_cols=289 Identities=17% Similarity=0.144 Sum_probs=215.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
..++|++++++|.+++++||+++++++|++.++++. ..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~-~~~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G--~rpv 125 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGVF-LVTEGLYE-RFGPERVIDTPLNEGGILGFAMGMAMAG--LKPV 125 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC----------CTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEE
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCcc-hhHHHHHH-HhCCCcEEECcccHHHHHHHHHHHHHCC--CeeE
Confidence 457999999999999999999999999998665532 33466876 78 9999999999999999999999999 6999
Q ss_pred EE-EchhHHHhHHHHHHH-hhhc--------CCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004970 489 CA-TFFVFTDYMRAAIRI-SALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 558 (721)
Q Consensus 489 v~-~~~~F~~r~~dqir~-~a~~--------~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 558 (721)
++ +|++|++|++|||++ +|++ ++||+++++++|. .| +|+|||+.+ +++||++|||+|++|+|++|++
T Consensus 126 ~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~-~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~ 202 (369)
T 1ik6_A 126 AEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG-TR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAK 202 (369)
T ss_dssp EECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------H-HHHHHTCTTCEEECCCSHHHHH
T ss_pred EEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC-CC-CCccccccH-HHHHcCCCCcEEEecCCHHHHH
Confidence 97 799999999999998 4776 9999999988884 45 888887765 6999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCC----CCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCC
Q 004970 559 GAYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 634 (721)
Q Consensus 559 ~~l~~a~~~~~~P~~Irl~r~~~~----~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi 634 (721)
.+|++|++ .++|++||++|.... .++.+ .+.+++|++.++++ |.|++||++|++++.|++|++.|+ |
T Consensus 203 ~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~~-~~~~~~G~~~v~~~----g~dv~Iia~G~~v~~a~~Aa~~L~--G- 273 (369)
T 1ik6_A 203 GLLKAAIR-GDDPVVFLEPKILYRAPREEVPEG-DYVVEIGKARVARE----GDDVTLVTYGAVVHKALEAAERVK--A- 273 (369)
T ss_dssp HHHHHHHH-SSSCEEEEEEGGGSSCCCEEEECS-SCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHTSS--S-
T ss_pred HHHHHHHh-CCCCEEEEEehhhhccCCCCcCCC-cccccCCceEEEEc----CCCEEEEEeCHHHHHHHHHHHHhC--C-
Confidence 99999997 689999998865432 22222 23477898777775 689999999999999999999996 8
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh----c--------CCceEEEe-ccCCCCCCHH
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV----G--------SKGKAIGI-DRFGASAPAG 700 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v----~--------~~~~~ig~-d~f~~~g~~~ 700 (721)
+++|||++|++|||++.+ ++++.+++ . +|++||+.. .||++.+ . .+..++|+ |.|+++|+
T Consensus 274 ~v~Vi~~~~l~P~d~~~i--~~~~~~~~-~-vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-- 347 (369)
T 1ik6_A 274 SVEVVDLQTLNPLDFDTV--LKSVSKTG-R-LIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-- 347 (369)
T ss_dssp CEEEEECCEEETTCHHHH--HHHHHHHC-C-EEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------
T ss_pred CeEEEeeeecCCCCHHHH--HHHHhccC-e-EEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH--
Confidence 999999999999999875 35565555 4 488899975 6786532 1 34578999 89999987
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 004970 701 KIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 701 ~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|||+++|+++|+++|
T Consensus 348 -l~~~~gl~~~~I~~~i~~~l 367 (369)
T 1ik6_A 348 -ADAAYAPTVERIIKAIEYVM 367 (369)
T ss_dssp --------CHHHHHHHHHHHH
T ss_pred -HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999999864
No 20
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=5.2e-49 Score=425.93 Aligned_cols=291 Identities=13% Similarity=0.086 Sum_probs=245.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCcc
Q 004970 409 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 487 (721)
Q Consensus 409 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~P 487 (721)
...++|++++++|.+++++||+++++++|++ ++++ +..+..|++ +| |+||+|+||+|++|+++|+|+|++| ++|
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp 93 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGV-FRCTVGLRD-KYGKDRVFNTPLCEQGIVGFGIGIAVTG--ATA 93 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CCE
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcc-cchHHHHHH-HhCCCeEEEcCcCHHHHHHHHHHHHHCC--Cee
Confidence 4578999999999999999999999999997 4433 344567876 78 9999999999999999999999999 599
Q ss_pred EEE-EchhHHHhHHHHHHH-hhhcCC---------cEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHH
Q 004970 488 YCA-TFFVFTDYMRAAIRI-SALCEA---------GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 556 (721)
Q Consensus 488 iv~-~~~~F~~r~~dqir~-~a~~~~---------pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 556 (721)
|+. +|++|++|++|||++ .|+++. ||+++++|+|. .+|+|||+++|+++||++|||+|++|+|++|
T Consensus 94 ~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~---~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e 170 (342)
T 2bfd_B 94 IAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV---GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQ 170 (342)
T ss_dssp EEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC---SSCGGGSSCCCHHHHHTSTTCEEECCSSHHH
T ss_pred EEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC---CCCcchhhHhHHHHHhcCCCcEEEeeCCHHH
Confidence 996 899999999999995 575443 99999987653 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEc----CCCCCCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhC
Q 004970 557 TAGAYKVAVANRKRPSILALS----RQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 632 (721)
Q Consensus 557 ~~~~l~~a~~~~~~P~~Irl~----r~~~~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 632 (721)
++.++++|++. ++|++||++ |+..+.++.+ .+.+++|++.+.++ |.|++||++|++++.|++|+++|+++
T Consensus 171 ~~~~l~~a~~~-~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~G~~~v~~~----g~dv~iia~G~~~~~a~~Aa~~L~~~ 244 (342)
T 2bfd_B 171 AKGLLLSCIED-KNPCIFFEPKILYRAAAEEVPIE-PYNIPLSQAEVIQE----GSDVTLVAWGTQVHVIREVASMAKEK 244 (342)
T ss_dssp HHHHHHHHHHS-SSCEEEEEEGGGTTSCCEEEESS-CCCCCSSCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcEEEEecchhcCCCCCCCCCc-ccceeCCceEEecc----CCCEEEEEECHHHHHHHHHHHHHHhh
Confidence 99999999974 899999877 4444433332 23477898777776 68999999999999999999999998
Q ss_pred -CCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccc-cccchhhhc------------CCceEEEe-ccCCCCC
Q 004970 633 -GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS-TFGWEKIVG------------SKGKAIGI-DRFGASA 697 (721)
Q Consensus 633 -Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~-~~G~~~~v~------------~~~~~ig~-d~f~~~g 697 (721)
||+++|||+++++|||.+.+ ++++.+.+ . +|++|++. ..||++.+. .+..++|+ |.|++++
T Consensus 245 ~Gi~v~vi~~~~l~P~d~~~i--~~~~~~~~-~-vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 245 LGVSCEVIDLRTIIPWDVDTI--CKSVIKTG-R-LLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HCCCEEEEECCEEESCCHHHH--HHHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred cCCCEEEEeeeecCCCCHHHH--HHHHhcCC-E-EEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 99999999999999999875 34555544 4 48999986 467876331 24578999 5688775
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 698 PAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 698 ~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|+|+++|+++|++++
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l 340 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMI 340 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHH
T ss_pred ----HHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999999864
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=2.2e-48 Score=420.42 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=245.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCcc
Q 004970 409 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 487 (721)
Q Consensus 409 ~~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~P 487 (721)
...++|++++++|.+++++||+++++++|++.++++. ..+..|++ +| |+||||+||+|++|+++|+|||+.| ++|
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~-~~~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G--~rp 88 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAY-KVSRGLWK-KYGDKRIIDTPISEMGFAGIAVGAAMAG--LRP 88 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTT-STTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEE
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcc-hhHHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--CEE
Confidence 4679999999999999999999999999998533321 12456766 79 9999999999999999999999999 699
Q ss_pred EEE-EchhHHHhHHHHHHHh-h--------hcCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHH
Q 004970 488 YCA-TFFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 557 (721)
Q Consensus 488 iv~-~~~~F~~r~~dqir~~-a--------~~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~ 557 (721)
|++ +|++|++|++|||++. | ++++||++++++ | .+|+||+||+...| ++||++|||+|++|+|++|+
T Consensus 89 ~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G-~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~ 165 (341)
T 2ozl_B 89 ICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G-ASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDA 165 (341)
T ss_dssp EEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S-CCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHH
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c-CCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHH
Confidence 998 7999999999999975 6 389999999986 6 47889999943445 99999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCC------C-CCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHH
Q 004970 558 AGAYKVAVANRKRPSILALSRQK------L-PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 630 (721)
Q Consensus 558 ~~~l~~a~~~~~~P~~Irl~r~~------~-~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 630 (721)
+.++++|++ .++|++||++|+. + |.++. ..+.+++|++.+.++ +.|++||++|+++..|++|++.|+
T Consensus 166 ~~~l~~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~~----g~dv~iia~Gs~~~~a~~Aa~~L~ 239 (341)
T 2ozl_B 166 KGLIKSAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIERQ----GTHITVVSHSRPVGHCLEAAAVLS 239 (341)
T ss_dssp HHHHHHHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEEC----CSSEEEEECSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEecc----CCCEEEEEeCHHHHHHHHHHHHHH
Confidence 999999997 4899999999753 2 11222 234577898777765 589999999999999999999999
Q ss_pred hCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhh----c---------CCceEEEe-ccCCC
Q 004970 631 KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV----G---------SKGKAIGI-DRFGA 695 (721)
Q Consensus 631 ~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v----~---------~~~~~ig~-d~f~~ 695 (721)
++|++++|||+++++|||.+.+. +.+.+.+ . +|++|++.. .||++.+ . .+..++|+ |.|++
T Consensus 240 ~~Gi~v~vv~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~ 315 (341)
T 2ozl_B 240 KEGVECEVINMRTIRPMDMETIE--ASVMKTN-H-LVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMP 315 (341)
T ss_dssp TTTCCEEEEECCEEETCCHHHHH--HHHHHHS-C-EEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCC
T ss_pred hcCCCeEEEeeeeecCCCHHHHH--HHHhcCC-e-EEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCC
Confidence 99999999999999999998653 4444433 4 489999985 6786532 1 24568999 89999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 696 SAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 696 ~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
+|+ +|++++|+|+++|+++|+++|
T Consensus 316 ~g~--~l~~~~g~~~~~I~~~i~~~l 339 (341)
T 2ozl_B 316 YAK--ILEDNSIPQVKDIIFAIKKTL 339 (341)
T ss_dssp SSH--HHHHTTSCCHHHHHHHHHHHH
T ss_pred CcH--HHHHHhCcCHHHHHHHHHHHh
Confidence 986 799999999999999999864
No 22
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=4.5e-48 Score=416.13 Aligned_cols=291 Identities=19% Similarity=0.156 Sum_probs=244.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccEE
Q 004970 411 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 489 (721)
Q Consensus 411 ~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv 489 (721)
.++|++++++|.+++++||+++++++|++.++++. ..+..|++ +| |+||+|+||+|++|+++|+|+|+.| ++||+
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~-~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp~~ 78 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVF-RATEGLQA-EFGEDRVFDTPLAESGIGGLAIGLALQG--FRPVP 78 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTT-STTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcc-hhHHHHHH-HhCCCcEEEcchhHHHHHHHHHHHHhCC--CEEEE
Confidence 57899999999999999999999999998766552 34567876 79 9999999999999999999999999 59999
Q ss_pred E-EchhHHHhHHHHHHH-hhh--------cCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHHH
Q 004970 490 A-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 559 (721)
Q Consensus 490 ~-~~~~F~~r~~dqir~-~a~--------~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 559 (721)
+ +|++|++|++|||++ .|+ +++||+++.. ..+.|.+|+||+. +|+++||++|||+|++|+|++|+..
T Consensus 79 ~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~ 155 (324)
T 1w85_B 79 EIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKG 155 (324)
T ss_dssp BCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHH
T ss_pred EecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHH
Confidence 7 799999999999997 576 7999999874 3335666777666 8889999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCCc
Q 004970 560 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 635 (721)
Q Consensus 560 ~l~~a~~~~~~P~~Irl~r~~~----~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 635 (721)
++++|++ .++|++||++|... +.++.+ .+.+++|++.+.++ |.|++||++|++++.|++|++.|+++|++
T Consensus 156 ~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~ 229 (324)
T 1w85_B 156 LLISAIR-DNDPVIFLEHLKLYRSFRQEVPEG-EYTIPIGKADIKRE----GKDITIIAYGAMVHESLKAAAELEKEGIS 229 (324)
T ss_dssp HHHHHHH-SSSCEEEEEETTTSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-cCCCEEEEechHhcCCCCCCCCCc-cccccCCceEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999997 68999998886543 222222 23477898877776 68999999999999999999999999999
Q ss_pred eEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhhc------------CCceEEEe-ccCCCCCCHHH
Q 004970 636 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIVG------------SKGKAIGI-DRFGASAPAGK 701 (721)
Q Consensus 636 ~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v~------------~~~~~ig~-d~f~~~g~~~~ 701 (721)
++|||+++++|||.+.+. +++.+++ . +|++|++.. .||++.+. .+..++|+ |.|+++|+
T Consensus 230 v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~--- 302 (324)
T 1w85_B 230 AEVVDLRTVQPLDIETII--GSVEKTG-R-AIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ--- 302 (324)
T ss_dssp EEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---
T ss_pred EEEEEeeeecCCCHHHHH--HHHhhCC-c-EEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---
Confidence 999999999999998753 4554444 4 488999974 67866331 34578999 89999987
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 004970 702 IYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 702 l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|||+++|+++|+++|
T Consensus 303 l~~~~gl~~~~I~~~i~~~l 322 (324)
T 1w85_B 303 AESVWLPNFKDVIETAKKVM 322 (324)
T ss_dssp GHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999999864
No 23
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=7e-48 Score=414.69 Aligned_cols=291 Identities=16% Similarity=0.120 Sum_probs=244.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
..++|++++++|.+++++||+++++++|++.++++. ..+..|++ +| |+||||+||+|++|+++|+|+|+.| ++||
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~-~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~~p~ 78 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVF-LVTEGLLQ-KYGPDRVMDTPLSEAAIVGAALGMAAHG--LRPV 78 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTT-STTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcc-hhhHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--CEEE
Confidence 358999999999999999999999999998766543 34567876 79 9999999999999999999999999 5999
Q ss_pred EE-EchhHHHhHHHHHHH-hhh--------cCCcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004970 489 CA-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 558 (721)
Q Consensus 489 v~-~~~~F~~r~~dqir~-~a~--------~~~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 558 (721)
++ +|++|++|++|||++ .|+ +++||+++..+ |. .+.+|++||. +|+++||++||++|++|+|++|++
T Consensus 79 ~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~-~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~ 155 (324)
T 1umd_B 79 AEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GG-GVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAK 155 (324)
T ss_dssp EECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CS-SSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHH
T ss_pred EEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CC-CCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHH
Confidence 97 799999999999987 475 79999999863 33 4556777766 899999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCC----CCCCCCccccccCccEEEecCCCCCCCCEEEEEeChhHHHHHHHHHHHHhCCC
Q 004970 559 GAYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 634 (721)
Q Consensus 559 ~~l~~a~~~~~~P~~Irl~r~~~----~~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi 634 (721)
.+++++++ .++|++||++|... +.++.+ .+.+++|++.+.++ |.|++||++|++++.|++|++.|+++||
T Consensus 156 ~~l~~a~~-~~~Pv~i~~p~~l~~~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi 229 (324)
T 1umd_B 156 GLLKAAIR-DEDPVVFLEPKRLYRSVKEEVPEE-DYTLPIGKAALRRE----GKDLTLICYGTVMPEVLQAAAELAKAGV 229 (324)
T ss_dssp HHHHHHHH-CSSCEEEEEEGGGSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh-cCCCEEEEechHhcCCCCCCcCCC-CccccCCcceEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCC
Confidence 99999997 68999998776432 233322 23477898777765 6899999999999999999999999999
Q ss_pred ceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhhc------------CCceEEEe-ccCCCCCCHH
Q 004970 635 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIVG------------SKGKAIGI-DRFGASAPAG 700 (721)
Q Consensus 635 ~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v~------------~~~~~ig~-d~f~~~g~~~ 700 (721)
+++|||+++++|||.+.+. +++.+.+ + +|++|++.. .||++.+. .+..++|+ |.|+++|
T Consensus 230 ~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--- 302 (324)
T 1umd_B 230 SAEVLDLRTLMPWDYEAVM--NSVAKTG-R-VVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--- 302 (324)
T ss_dssp CEEEEECCEEETCCHHHHH--HHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST---
T ss_pred CEEEEEeceecCCCHHHHH--HHHhcCC-e-EEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH---
Confidence 9999999999999998753 4555544 4 489999974 67765431 34578999 8999998
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 004970 701 KIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 701 ~l~~~~gl~~e~I~~~i~~ll 721 (721)
|++++|+|+++|+++|+++|
T Consensus 303 -l~~~~g~~~~~I~~~i~~~l 322 (324)
T 1umd_B 303 -QDKLYLPTVTRILNAAKRAL 322 (324)
T ss_dssp -THHHHSCCHHHHHHHHHHHH
T ss_pred -HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999999864
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=3.1e-47 Score=411.99 Aligned_cols=288 Identities=16% Similarity=0.116 Sum_probs=243.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEeccCCCcccchhcccccCcccCC-CCccccCCchHHHHHHHHHHHHhcCCCCccE
Q 004970 410 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 488 (721)
Q Consensus 410 ~~~~r~a~~~~L~~l~~~~p~vv~~saDl~~s~~~~~~~~~~f~~~~~-p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Pi 488 (721)
..++|++++++|.+++++||+++++++|++.++++. ..+..|++ +| |+||+|+||+|++|+++|+|+|+.| ++||
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~-~~~~~~~~-~~gp~r~~~~gisE~~~~~~a~G~A~~G--~rp~ 79 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVF-RCTEGLQT-KYGKSRVFDAPISESGIVGTAVGMGAYG--LRPV 79 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTT-STTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEE
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcc-hhHHHHHH-HhCCCcEEEccccHHHHHHHHHHHHhCC--CEEE
Confidence 357999999999999999999999999998766652 44567876 79 9999999999999999999999999 5999
Q ss_pred EE-EchhHHHhHHHHHHH-hhhcC--------CcEEEEEecCCcccCCCCCCCCChhhhHHHhcCCCcEEEeeCCHHHHH
Q 004970 489 CA-TFFVFTDYMRAAIRI-SALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 558 (721)
Q Consensus 489 v~-~~~~F~~r~~dqir~-~a~~~--------~pV~~v~t~~g~~~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 558 (721)
++ +|++|++|++|||++ .|+++ +||+++++++| +.||+|||+++|+++||++|||+|++|+|++|++
T Consensus 80 ~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g---~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~ 156 (338)
T 1qs0_B 80 VEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG---GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAK 156 (338)
T ss_dssp EECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC---SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHH
T ss_pred EEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC---CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHH
Confidence 97 899999999999986 57544 99999998776 5799999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEc----CCCCC----------------CCCCCccccccCccEEEecCCCCCCCCEEEEEeChh
Q 004970 559 GAYKVAVANRKRPSILALS----RQKLP----------------HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 618 (721)
Q Consensus 559 ~~l~~a~~~~~~P~~Irl~----r~~~~----------------~~~~~~~~~~~~G~~~v~~~~~~~g~dvtIva~G~~ 618 (721)
.++++|++. ++|++||++ |++.+ .++.+ .+.+++|++.+.++ |.|++||++|++
T Consensus 157 ~~l~~A~~~-~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~~~~~~----g~dv~iva~G~~ 230 (338)
T 1qs0_B 157 GLLIASIEC-DDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG-YYTVPLDKAAITRP----GNDVSVLTYGTT 230 (338)
T ss_dssp HHHHHHHHS-SSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESS-CCCCCTTCCCEEEC----CSSCEEEECTTH
T ss_pred HHHHHHHhc-CCcEEEEEchHhhcCcccccccCccchhhcccccccCCC-CcccccCceeEecC----CCCEEEEEeCHH
Confidence 999999974 899999776 65444 23222 23467887766665 589999999999
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEccccc-ccchhhhc------------CCc
Q 004970 619 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIVG------------SKG 685 (721)
Q Consensus 619 v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~-~G~~~~v~------------~~~ 685 (721)
++.|++|++. +|++++|||+++++|||.+.+. +++.+.+ . +|++|++.. .||++.+. .+.
T Consensus 231 ~~~a~~Aa~~---~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v 303 (338)
T 1qs0_B 231 VYVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIV--ESVKKTG-R-CVVVHEATRTCGFGAELVSLVQEHCFHHLEAPI 303 (338)
T ss_dssp HHHHHHHHHH---HCCCCEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCC
T ss_pred HHHHHHHHHH---cCCCEEEEeecccCCCCHHHHH--HHHhcCC-E-EEEEecCCcCCcHHHHHHHHHHHhcccccCCCe
Confidence 9999999987 5999999999999999998753 4554444 4 499999874 67866331 244
Q ss_pred eEEEe-ccCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 686 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 686 ~~ig~-d~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
.++|+ |.|.+++ |++++|+|+++|+++|++++
T Consensus 304 ~~ig~~d~~~~~~----l~~~~g~~~~~I~~~i~~~l 336 (338)
T 1qs0_B 304 ERVTGWDTPYPHA----QEWAYFPGPSRVGAALKKVM 336 (338)
T ss_dssp EEEECCSSCCCST----THHHHSCCHHHHHHHHHHSS
T ss_pred EEEecCCcCCcHH----HHHHHCCCHHHHHHHHHHHh
Confidence 67998 7888776 99999999999999999875
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=1.4e-28 Score=268.32 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC----
Q 004970 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD---- 165 (721)
Q Consensus 90 ~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~---- 165 (721)
+.+..+|.+..+++...++||+|+++|+.....+++...+.++| +||+||++ |.. |+++...|++
T Consensus 43 ~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~------~rD~i~~s--~r~---~~~~~~~G~~~~~~ 111 (367)
T 1umd_A 43 RDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRP------GFDWVFPY--YRD---HGLALALGIPLKEL 111 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCT------TTSEEECC--TTT---HHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCC------CCcEEEeC--cHH---HHHHHHcCCCHHHH
Confidence 46899999999999988899999998888877777777777886 67999874 444 6665555653
Q ss_pred --------------------------CcccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChh
Q 004970 166 --------------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219 (721)
Q Consensus 166 --------------------------gie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG 219 (721)
++...+|++|+++|.|+|+|+|.++.+ .+++|||++|||++++|
T Consensus 112 l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~----------~~~~vv~i~GDGa~~~G 181 (367)
T 1umd_A 112 LGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLR----------TGQVAVCTFGDGATSEG 181 (367)
T ss_dssp HHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSH
T ss_pred HHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhC----------CCCeEEEEEcccccccC
Confidence 112478999999999999999998764 27889999999999999
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCccccccccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCC
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTD 295 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~ 295 (721)
.+||+|++|++++++ +++||+||+|++++++.. ....++.+++++|||+++.| ||+ |+.++.+++++|++ ..+
T Consensus 182 ~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~-d~~av~~a~~~A~~~a~~~~ 258 (367)
T 1umd_A 182 DWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV-DGM-DVLASYYVVKEAVERARRGE 258 (367)
T ss_dssp HHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE-ETT-CHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe-CCC-CHHHHHHHHHHHHHHHHhcC
Confidence 999999999999996 999999999999887643 33578999999999999998 999 99999988887754 257
Q ss_pred CCEEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHH
Q 004970 296 KPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATR 333 (721)
Q Consensus 296 ~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~ 333 (721)
+|++|+++|+|++||+.++++..|+ +++|++.++
T Consensus 259 gP~lIe~~t~r~~Ghs~~D~~~~Yr----~~~e~~~~~ 292 (367)
T 1umd_A 259 GPSLVELRVYRYGPHSSADDDSRYR----PKEEVAFWR 292 (367)
T ss_dssp CCEEEEEECCCCSCSSTTCCGGGTS----CHHHHHHHH
T ss_pred CCEEEEEEeecCCCCCCCCCccccC----CHHHHHHHH
Confidence 9999999999999999886555554 577777665
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.94 E-value=1.1e-25 Score=244.72 Aligned_cols=234 Identities=20% Similarity=0.128 Sum_probs=166.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhcCCCCCCC-CCCCeEEEcCCcchHHHHHHHHHhCCC---------CcccCccccchh
Q 004970 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYW-FNRDRFVLSAGHGCMLQYALLHLAGYD---------SVQVTTGPLGQG 177 (721)
Q Consensus 108 ~GH~g~~ls~~~l~~aL~~~~l~~~~~~p~~-~~~D~~V~s~Gh~~~~~y~~l~l~G~~---------gie~~~G~lG~g 177 (721)
-|+..++.|.--+.+.+... ++|+|.-+ ..||++++ .+|+.+..+.+..+.|.. ++...+|+||++
T Consensus 72 ~g~~~~~~G~Ea~~vg~~~~---l~~~D~v~~~~R~~~~~-~~~G~~~~~~~~el~G~~~G~~~h~~~~~~~~~g~lG~~ 147 (368)
T 1w85_A 72 LGFYAPTAGQEASQIASHFA---LEKEDFILPGYRDVPQI-IWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQ 147 (368)
T ss_dssp CCSCCCCTTCHHHHHHHHHT---CCTTCEEECCSSCHHHH-HHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHH
T ss_pred cccCCCCCCHHHHHHHHHHh---cCCcCEEEecchhHHHH-HhcCCCHHHHHHHHCCCCCCCCCCcccccCCCccccCcc
Confidence 35555677755555666655 44422111 12333222 234444456666666642 455689999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccccc-cc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FT 256 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~-~~ 256 (721)
+|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|+.++| |+++||+||+|++++++... ..
T Consensus 148 lp~AvG~A~A~~~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~l-pvi~vv~NN~~gi~~~~~~~~~~ 216 (368)
T 1w85_A 148 YIQAAGVALGLKMRG----------KKAVAITYTGDGGTSQGDFYEGINFAGAFKA-PAIFVVQNNRFAISTPVEKQTVA 216 (368)
T ss_dssp HHHHHHHHHHHHHTT----------CSCCEEEEEETGGGGSHHHHHHHHHHHHTTC-CEEEEEEECSEETTEEGGGTCSC
T ss_pred ccHHHHHHHHhHhhC----------CCCeEEEEEchhhhhhcHHHHHHHHHHHHCc-CEEEEEEcCCccceeccccccCC
Confidence 999999999998764 2789999999999999999999999999999 79999999999998876543 34
Q ss_pred ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCC-CCCCCCcccCCCCChhhHHHH
Q 004970 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSP-NKANSYSVHGSALGAKEVDAT 332 (721)
Q Consensus 257 ~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~-~~~~~~~~H~~~~~~~~~~~~ 332 (721)
+++.+++++|||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|.+||+ .++++..+. +.+|++.+
T Consensus 217 ~d~~~~a~a~G~~~~~V-dG~-D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr----~~~e~~~~ 290 (368)
T 1w85_A 217 KTLAQKAVAAGIPGIQV-DGM-DPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYR----SKELENEW 290 (368)
T ss_dssp SCSGGGGGGTTCCEEEE-ETT-CHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC----------CHHHHHHH
T ss_pred CCHHHHHHHCCCCEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccC----CHHHHHHH
Confidence 78999999999999998 999 99999999999875 2579999999999999998 665554443 46777766
Q ss_pred HHhcCCCCCCCCCchhhHHHHHHH-HhhhhhhHHHHHHHHHHH
Q 004970 333 RKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEY 374 (721)
Q Consensus 333 ~~~l~~~~~p~~v~~ev~~~~~~~-~~~g~~~~~~~~~~~~~~ 374 (721)
++ .|| ...|++. .++|...++++.+..+++
T Consensus 291 ~~-----~dP-------i~~~~~~L~~~g~~~~~~~~~i~~~~ 321 (368)
T 1w85_A 291 AK-----KDP-------LVRFRKFLEAKGLWSEEEENNVIEQA 321 (368)
T ss_dssp HT-----TCH-------HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hc-----CCH-------HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 53 233 3456553 345544444444444443
No 27
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.93 E-value=4.6e-26 Score=250.39 Aligned_cols=178 Identities=22% Similarity=0.186 Sum_probs=141.1
Q ss_pred ccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccc
Q 004970 168 QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 247 (721)
Q Consensus 168 e~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i 247 (721)
...+|+||+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|+.|+|+ +++||+||+|++
T Consensus 177 ~~~~g~lG~~lp~AvGaA~A~k~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~gi 245 (407)
T 1qs0_A 177 FTISGNLATQFVQAVGWAMASAIKG----------DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAI 245 (407)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSEET
T ss_pred cccccccccchhHHHHHHHHHHHhC----------CCCEEEEEECCchhhcChHHHHHHHHHHHCcC-EEEEEECCCcce
Confidence 3468999999999999999998764 27899999999999999999999999999996 999999999999
Q ss_pred ccccccc--ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCC
Q 004970 248 DGDTEIA--FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGS 322 (721)
Q Consensus 248 ~~~~~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 322 (721)
++++... ...++.+++++|||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|++||+.++++..|.
T Consensus 246 ~~~~~~~~~~~~d~a~~a~a~G~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr-- 321 (407)
T 1qs0_A 246 STFQAIAGGESTTFAGRGVGCGIASLRV-DGN-DFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR-- 321 (407)
T ss_dssp TEEGGGGTTTTCCSTHHHHHTTCEEEEE-ETT-CHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTS--
T ss_pred eeccccccCCCCCHHHHHHHcCCeEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccC--
Confidence 9877543 3578999999999999998 999 99999999998865 2589999999999999999886554443
Q ss_pred CCChhhHHHHHHhcCCCCCCCCCchhhHHHHHHH-HhhhhhhHHHHHHHHHHH
Q 004970 323 ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEY 374 (721)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~~-~~~g~~~~~~~~~~~~~~ 374 (721)
++++++.++ ..|| ...|++. +++|...+++..+..+++
T Consensus 322 --~~~e~~~~~-----~~DP-------i~~~~~~L~~~g~~~~~~~~~i~~~~ 360 (407)
T 1qs0_A 322 --PADDWSHFP-----LGDP-------IARLKQHLIKIGHWSEEEHQATTAEF 360 (407)
T ss_dssp --CTTHHHHCT-----TCCH-------HHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred --CHHHHHHHh-----cCCH-------HHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456665432 1233 3456553 345544444444444443
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.92 E-value=1.1e-24 Score=239.60 Aligned_cols=138 Identities=26% Similarity=0.308 Sum_probs=117.9
Q ss_pred cccCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc
Q 004970 167 VQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246 (721)
Q Consensus 167 ie~~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~ 246 (721)
+...+|+||+++|.|+|+|+|.++.+ .+++|||++|||++++|.+||+|++|++++| |+++||+||+|+
T Consensus 157 ~~~~~g~lG~~lp~AvG~AlA~~~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vv~NN~~~ 225 (400)
T 2bfd_A 157 FVTISSPLATQIPQAVGAAYAAKRAN----------ANRVVICYFGEGAASEGDAHAGFNFAATLEC-PIIFFCRNNGYA 225 (400)
T ss_dssp BCCCCSSTTTHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHHTTC-CEEEEEEECSEE
T ss_pred ccccCccccccccHHHHHHHhhhhhC----------CCCeEEEEECchhhhcChHHHHHHHHHHHCc-CEEEEEECCcee
Confidence 34578999999999999999999765 2789999999999999999999999999999 899999999999
Q ss_pred cccccccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCC
Q 004970 247 IDGDTEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSY 317 (721)
Q Consensus 247 i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~ 317 (721)
+++++... ..+++.+++++|||+++.| ||+ |++++.+++++|++ ..++|++|+++|+|..||+..+++.
T Consensus 226 i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~ 298 (400)
T 2bfd_A 226 ISTPTSEQYRGDGIAARGPGYGIMSIRV-DGN-DVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSS 298 (400)
T ss_dssp TTEEGGGTCSSSTTGGGTGGGTCEEEEE-ETT-CHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-----
T ss_pred eeecccccCCCCCHHHHHHHcCCcEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCc
Confidence 99877643 3478999999999999998 999 99999999988865 2579999999999988888765443
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.91 E-value=1.3e-22 Score=220.06 Aligned_cols=177 Identities=23% Similarity=0.189 Sum_probs=138.6
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccc
Q 004970 170 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 249 (721)
Q Consensus 170 ~~G~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~ 249 (721)
.+|+||+++|.|+|+|+|.++.+ .++.|||++|||++++|.+||+|++|+.|+| |+++||+||+|++++
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~l-pvi~vv~NN~~g~~t 206 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNG----------KDEVCLTLYGDGAANQGQIFEAYNMAALWKL-PCIFICENNRYGMGT 206 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGCHHHHHHHHHHHHTTC-CEEEEEEECSEETTE
T ss_pred CcchhhhhhHHHHHHHHHHHhcC----------CCceEEEEECchhhhccHHHHHHHHHHHHCc-CEEEEEECCCcccCC
Confidence 45899999999999999999765 2788999999999999999999999999999 599999999999987
Q ss_pred cccc-cccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeeccCCCCCCCCCcccCCCCC
Q 004970 250 DTEI-AFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGFGSPNKANSYSVHGSALG 325 (721)
Q Consensus 250 ~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~ 325 (721)
+... ...+++.+ +++||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|.+||+..++...| .+
T Consensus 207 ~~~~~~~~~~~~~--ra~g~p~~~V-dG~-D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Y----r~ 278 (365)
T 2ozl_A 207 SVERAAASTDYYK--RGDFIPGLRV-DGM-DILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSY----RT 278 (365)
T ss_dssp EHHHHCSCCCGGG--TTTTSCEEEE-ETT-CHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSS----SC
T ss_pred CcccccCCCCHHH--HhCCCCEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCccc----CC
Confidence 6542 23456665 6899999998 999 99999999998864 268999999999999999866422223 35
Q ss_pred hhhHHHHHHhcCCCCCCCCCchhhHHHHHH-HHhhhhhhHHHHHHHHHHHHh
Q 004970 326 AKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEK 376 (721)
Q Consensus 326 ~~~~~~~~~~l~~~~~p~~v~~ev~~~~~~-~~~~g~~~~~~~~~~~~~~~~ 376 (721)
+++++.+++. .+....|++ ++++|...++++.+..+++++
T Consensus 279 ~~e~~~~~~~-----------~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~ 319 (365)
T 2ozl_A 279 REEIQEVRSK-----------SDPIMLLKDRMVNSNLASVEELKEIDVEVRK 319 (365)
T ss_dssp HHHHHHHHHH-----------HCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----------CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7888876642 123456665 345565556666655555443
No 30
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.72 E-value=6.3e-17 Score=187.81 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=139.1
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--c--ccCccccchhHHHHHHHHHH
Q 004970 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--V--QVTTGPLGQGMANAVGLALA 187 (721)
Q Consensus 112 g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--i--e~~~G~lG~gl~~AvG~AlA 187 (721)
...++...++..|... +. +++.||+|.|....+ ...++....+ + ....|+||+++|.|+|++++
T Consensus 368 ~~~l~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~--~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala 435 (603)
T 4feg_A 368 EGPLQAYQVLRAVNKI---AE-------PDAIYSIDVGDINLN--ANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN 435 (603)
T ss_dssp SSBCCHHHHHHHHHHH---CC-------TTCEEEECSSHHHHH--HHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHh---CC-------CCCEEEECCchHHHH--HHHhceeCCCCceecCcccccccchhHHHhhHHHh
Confidence 3467888777777765 43 578899999954433 3333322211 1 12469999999999999998
Q ss_pred HHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccc----------cc-cccc
Q 004970 188 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD----------TE-IAFT 256 (721)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~----------~~-~~~~ 256 (721)
.+ +++|||++|||+|+ +.+++|++|++++++.+++|+|||+|++... .. ....
T Consensus 436 ~~--------------~~~vv~~~GDG~~~--~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (603)
T 4feg_A 436 YP--------------ERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFND 499 (603)
T ss_dssp CT--------------TSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCC
T ss_pred CC--------------CCcEEEEeccHHHh--hhHHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCC
Confidence 76 67899999999998 5699999999999988999999999987321 11 1234
Q ss_pred ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHH--hcCCCCEEEEEEEeeccCCCCCCCCCcccCCCCChhhHHHHHH
Q 004970 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK--AVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRK 334 (721)
Q Consensus 257 ~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~--~~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~~~~~~~~~ 334 (721)
.|+.+++++||++++.| + +++++.+++++++ + .++|++|||.|.+++..+........|+. ...+.++.++
T Consensus 500 ~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~~~-~~gP~lIev~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 572 (603)
T 4feg_A 500 IDFSKIADGVHMQAFRV---N-KIEQLPDVFEQAKAIA-QHEPVLIDAVITGDRPLPAEKLRLDSAMS--SAADIEAFKQ 572 (603)
T ss_dssp CCHHHHHHHTTCEEEEE---C-BGGGHHHHHHHHHHHT-TTSCEEEEEECCCCCCCCTTSCCCCTTTS--CHHHHHHHHH
T ss_pred CCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHHhc-CCCcEEEEEEeCCCCCCCcccchhhhhhh--hHHHHHHHHh
Confidence 68999999999999999 3 7789999999998 6 78999999999887766654333444542 3334334444
Q ss_pred h
Q 004970 335 N 335 (721)
Q Consensus 335 ~ 335 (721)
.
T Consensus 573 ~ 573 (603)
T 4feg_A 573 R 573 (603)
T ss_dssp H
T ss_pred h
Confidence 3
No 31
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.70 E-value=9.7e-18 Score=184.46 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=80.5
Q ss_pred CCCccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 457 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 457 ~p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
+..+|+.+. +|+.++++|.|.|+.|. +|++.+..+++.+++|||.+.+..++|++++....+.. .|....+||+..
T Consensus 63 ~g~~~i~~e-~E~~a~~~a~Gaa~aG~--r~~~~ts~~G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~ 139 (395)
T 1yd7_A 63 VDGVVIQME-DEIASIAAAIGASWAGA--KAMTATSGPGFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDI 139 (395)
T ss_dssp GTCEEEECS-CHHHHHHHHHHHHHTTC--CEEEEEETTHHHHHTTTCC----CCCCEEEEEEC-----------------
T ss_pred cCcEEEEeC-CHHHHHHHHHHHHHhCC--cEEEEeCchHHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHH
Confidence 557888887 99999999999999995 99999999999999999988888899988886433221 121233344322
Q ss_pred hhHHHhcCC--CcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CC--CCC---CC----------CC--
Q 004970 536 HLASFRAMP--NILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QK--LPH---LA----------GT-- 587 (721)
Q Consensus 536 dia~lr~iP--nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r------~~--~~~---~~----------~~-- 587 (721)
-.+.+...| ++.++.|++++|+..++..|++ +.+.|++++++. ++ ++. +. .+
T Consensus 140 ~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (395)
T 1yd7_A 140 MQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAK 219 (395)
T ss_dssp ---------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------
T ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccc
Confidence 223556666 9999999999999999999983 246899999863 11 110 00 00
Q ss_pred ccccc--cC--------ccE---------------------------------------------EEecCCCCCCCCEEE
Q 004970 588 SIDGV--EK--------GAY---------------------------------------------IISDNSSGNKPDVIL 612 (721)
Q Consensus 588 ~~~~~--~~--------G~~---------------------------------------------~v~~~~~~~g~dvtI 612 (721)
..+.. +. |.. ..... .+.|++|
T Consensus 220 ~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~---~g~dv~i 296 (395)
T 1yd7_A 220 LPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYEL---EDAEIGV 296 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcccCCCCCCCCCccCCCCceeEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecC---CCCCEEE
Confidence 00000 00 000 00111 2579999
Q ss_pred EEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCceE-EEec
Q 004970 613 IGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA-IGID 691 (721)
Q Consensus 613 va~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~~-ig~d 691 (721)
|++|+++..|++|++.|+++|++++||++++++|||.+.+. ..++.. +.++|+|++. .|+++.+...... ..+.
T Consensus 297 va~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~---~~~~~~-~~vvvvEe~~-G~l~~~v~~~~~~~~~~~ 371 (395)
T 1yd7_A 297 VATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIE---RIAERV-DKLYVPEMNL-GQLYHLIKEGANGKAEVK 371 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEeCCc-hHHHHHHHHHhcCCCCeE
Confidence 99999999999999999999999999999999999998763 233333 3359999997 6677665311000 0011
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 004970 692 RFGASAPAGKIYKEFGITAEAVITAAKEVC 721 (721)
Q Consensus 692 ~f~~~g~~~~l~~~~gl~~e~I~~~i~~ll 721 (721)
..+..| -.-++++.|++.+++++
T Consensus 372 ~~gk~~-------g~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 372 LISKIG-------GEVHTPMEIFEFIRREF 394 (395)
T ss_dssp ------------------------------
T ss_pred EEeccC-------CCcCCHHHHHHHHHHhh
Confidence 111111 12368888888877653
No 32
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.67 E-value=2e-16 Score=182.09 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.++...++..|... ++ +++.++.+.|+.+++...++.......+ ...+|+||+++|.|+|+|+|.+
T Consensus 369 ~~~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~-- 436 (563)
T 2uz1_A 369 ALHPFHASQVIAKH---VD-------AGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL-- 436 (563)
T ss_dssp SCCHHHHHHHHHTT---CS-------TTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH--
T ss_pred CcCHHHHHHHHHHh---CC-------CCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhh--
Confidence 57777777777654 32 5678888999877654444332221011 1246999999999999999984
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------c-----cccccH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------I-----AFTENV 259 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------~-----~~~~~~ 259 (721)
+ .+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+..+ . ....|+
T Consensus 437 ~----------~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 504 (563)
T 2uz1_A 437 E----------AGRRTILVTGDGSVG--YSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSY 504 (563)
T ss_dssp H----------HTCEEEEEEEHHHHG--GGTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCH
T ss_pred C----------CCCeEEEEEccHHHh--CCHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCH
Confidence 1 178999999999999 568899999999999999999999998876431 1 134689
Q ss_pred HHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 260 DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 260 ~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
.+++++|||+++.| + +.+++.++++++++ .++|++||+.|.+
T Consensus 505 ~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~ 546 (563)
T 2uz1_A 505 HGVAAAFGADGYHV---D-SVESFSAALAQALA-HNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHTTCEEEEE---C-SHHHHHHHHHHHHH-SSSCEEEEEECCS
T ss_pred HHHHHHcCCeEEEe---C-CHHHHHHHHHHHHH-CCCCEEEEEEecc
Confidence 99999999999999 4 89999999999998 7899999999974
No 33
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.66 E-value=3.9e-16 Score=179.83 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c--ccCccccchhHHHHHHHHHHHHHh
Q 004970 115 MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V--QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 115 ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i--e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
++...++..|... ++ +++.++.+.|...++...++... .++ + ...+|+||+++|.|+|+|+|.+
T Consensus 371 l~~~~v~~~l~~~---l~-------~~~iv~~d~G~~~~~~~~~~~~~-~~~~~~~~~g~g~mG~~l~~AiGaala~~-- 437 (566)
T 1ozh_A 371 LHPLRIVRAMQDI---VN-------SDVTLTVDMGSFHIWIARYLYTF-RARQVMISNGQQTMGVALPWAIGAWLVNP-- 437 (566)
T ss_dssp BCHHHHHHHHHHH---CC-------TTEEEEECSSHHHHHHHHTGGGC-CCSEEECCCTTCCTTCHHHHHHHHHHHST--
T ss_pred cCHHHHHHHHHHh---CC-------CCCEEEEcCcHHHHHHHHhcccC-CCCeEEeCCCcccccchHHHHHHHHHhCC--
Confidence 7888888888766 42 46778889996544433322211 111 1 1247999999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~~ 261 (721)
+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+..+ .....|+.+
T Consensus 438 ------------~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 503 (566)
T 1ozh_A 438 ------------ERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKA 503 (566)
T ss_dssp ------------TSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHH
T ss_pred ------------CCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHH
Confidence 78999999999998 678999999999999999999999998876432 123368999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
++++|||++++| + +.+++.++++++++ .++|++||+.|.+.
T Consensus 504 ~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~ 544 (566)
T 1ozh_A 504 YAESFGAKGFAV---E-SAEALEPTLRAAMD-VDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHTTTSEEEEC---C-SGGGHHHHHHHHHH-SSSCEEEEEEBCCT
T ss_pred HHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 999999999998 3 78999999999987 78999999999875
No 34
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.65 E-value=2.9e-16 Score=181.78 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-c-ccCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-V-QVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-i-e~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.+....++..|... ++ +++.++.+.|...++...++....... + ...+|+||+++|.|+|+|+|.+
T Consensus 376 ~l~~~~~~~~l~~~---lp-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~-- 443 (590)
T 1ybh_A 376 AIPPQYAIKVLDEL---TD-------GKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANP-- 443 (590)
T ss_dssp BCCHHHHHHHHHHH---TT-------TCCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCT--
T ss_pred CcCHHHHHHHHHHh---CC-------CCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCC--
Confidence 46777777777655 32 467777899965543322211111001 1 1246999999999999999875
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------------c-c----
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------------I-A---- 254 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------------~-~---- 254 (721)
+++|||++|||+|+ |.+++|++|.+++++.+++|+|||+|++.+..+ . .
T Consensus 444 ------------~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 509 (590)
T 1ybh_A 444 ------------DAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQE 509 (590)
T ss_dssp ------------TSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGT
T ss_pred ------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccccccc
Confidence 67899999999998 678999999999999899999999998865321 1 0
Q ss_pred --ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCC
Q 004970 255 --FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPN 312 (721)
Q Consensus 255 --~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~ 312 (721)
...|+.+++++||++++.| + +.+++.++++++++ .++|++||+.|.++....+
T Consensus 510 ~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 510 DEIFPNMLLFAAACGIPAARV---T-KKADLREAIQTMLD-TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp TSCSSCHHHHHHHTTCCEEEE---C-BHHHHHHHHHHHHH-SSSCEEEEEECCTTCCCCS
T ss_pred cCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCcccCC
Confidence 1358999999999999999 4 89999999999998 7899999999999876543
No 35
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.65 E-value=2.3e-16 Score=182.53 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=132.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..++...++..|... +. +++.++.+.|...++...++.......+- ..+|+||+++|.|+|+|+|.+
T Consensus 373 ~~l~~~~~~~~l~~~---l~-------~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~- 441 (589)
T 2pgn_A 373 MPASMFRAMAEVRKV---QR-------PEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEP- 441 (589)
T ss_dssp SSCCHHHHHHHHHHT---CC-------TTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCT-
T ss_pred CCcCHHHHHHHHHHh---CC-------CCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCC-
Confidence 357777777777655 32 46788889998766554432211100111 135999999999999999875
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHH
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVD 260 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~ 260 (721)
+++|||++|||+|+ +.+++|+++.+++++.+++|+|||+|++.+..+ .....|+.
T Consensus 442 -------------~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 506 (589)
T 2pgn_A 442 -------------NSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWV 506 (589)
T ss_dssp -------------TSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHH
T ss_pred -------------CCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHH
Confidence 67899999999998 668999999999999999999999999876532 11246899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCCC
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNK 313 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~~ 313 (721)
+++++|||+++.| + +.+++.++++++.+ .++|++||+.|.++.+..+.
T Consensus 507 ~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~~~~~~ 554 (589)
T 2pgn_A 507 GIAKAFGAYGESV---R-ETGDIAGALQRAID-SGKPALIEIPVSKTQGLASD 554 (589)
T ss_dssp HHHHHHTCEEEEC---T-TTCCHHHHHHHHHH-HCSCEEEEEECCSSSSTTTC
T ss_pred HHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCCCcCcc
Confidence 9999999999998 3 67889999999987 68999999999998776543
No 36
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.65 E-value=2.6e-16 Score=182.21 Aligned_cols=164 Identities=12% Similarity=0.137 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHHh
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
.++...++..|... ++ +++.|+.|.|...++...++....-..+- ..+|+||+++|.|+|+|+|.+
T Consensus 363 ~~~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~-- 430 (590)
T 1v5e_A 363 DLQFYQVYNAINNH---AD-------EDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYP-- 430 (590)
T ss_dssp BCCHHHHHHHHHHH---SC-------TTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCT--
T ss_pred CcCHHHHHHHHHhh---CC-------CCCEEEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCC--
Confidence 47778788777766 32 46788889997765432222111100111 257999999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc----------cccccHHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI----------AFTENVDK 261 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~----------~~~~~~~~ 261 (721)
+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+..+. ....|+.+
T Consensus 431 ------------~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~ 496 (590)
T 1v5e_A 431 ------------DRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAK 496 (590)
T ss_dssp ------------TSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHH
T ss_pred ------------CCeEEEEEechHHh--chHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHH
Confidence 67899999999998 6689999999999999999999999998865421 12468999
Q ss_pred HHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcC---CCCEEEEEEEeecc
Q 004970 262 RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT---DKPTLIRVTTTIGF 308 (721)
Q Consensus 262 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~---~~P~lI~~~T~kg~ 308 (721)
++++|||++++| + +.+++.++++++.+ . ++|++|++.|.++.
T Consensus 497 ~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 497 IAEAQGAKGFTV---S-RIEDMDRVMAEAVA-ANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHTTSEEEEE---C-BHHHHHHHHHHHHH-HHHTTCCEEEEEECCSCC
T ss_pred HHHHcCCEEEEE---C-CHHHHHHHHHHHHH-hcCCCCCEEEEEEecccc
Confidence 999999999999 4 88999999999987 4 89999999999865
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.64 E-value=2.7e-16 Score=181.49 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCcc--cCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ--VTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gie--~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..++...++..|... +++ ..+..++.++.+.|...++...++.......+- ..+|+||+++|.|+|+|+|.+
T Consensus 380 ~~~~~~~~~~~l~~~---l~~--~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~- 453 (573)
T 2iht_A 380 DGMRVHQVIDSMNTV---MEE--AAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARP- 453 (573)
T ss_dssp SSBCHHHHHHHHHHH---HHH--HSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHST-
T ss_pred CCcCHHHHHHHHHHh---ccc--ccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCC-
Confidence 357777777777765 210 000125778889997765443332111100111 246999999999999999975
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------------cccccc
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------------IAFTEN 258 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------------~~~~~~ 258 (721)
+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+..+ .....|
T Consensus 454 -------------~~~vv~i~GDG~~~--~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d 518 (573)
T 2iht_A 454 -------------DQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVD 518 (573)
T ss_dssp -------------TSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCC
T ss_pred -------------CCcEEEEEccHHHH--hHHHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCC
Confidence 67899999999998 668999999999999999999999999877521 112368
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+.+++++|||+++.| + +.+++.++++++++ .++|++||+.|.+
T Consensus 519 ~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~ 561 (573)
T 2iht_A 519 FVALAEANGVDATRA---T-NREELLAALRKGAE-LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHTTCEEEEC---C-SHHHHHHHHHHHHT-SSSCEEEEEEBCC
T ss_pred HHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 999999999999998 4 89999999999987 7899999999987
No 38
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.64 E-value=1.5e-15 Score=174.38 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..++...++..|... +. +++.||.|.|....+...++.......+ ....|+||+++|.|+|+++|.+
T Consensus 355 ~~~~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~- 423 (549)
T 3eya_A 355 KAIHPQYLAQQISHF---AA-------DDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEP- 423 (549)
T ss_dssp SCBCHHHHHHHHHHH---SC-------TTCEEEECTTHHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHST-
T ss_pred CCcCHHHHHHHHHhh---CC-------CCCEEEEcCcHHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCC-
Confidence 467777777777655 33 5788889999766554333221110011 1256999999999999999876
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc----------ccccccHH
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE----------IAFTENVD 260 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~----------~~~~~~~~ 260 (721)
+++|||++|||+|+ |.+++|+++.+++++.+++|+|||+|++....+ .....|+.
T Consensus 424 -------------~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 488 (549)
T 3eya_A 424 -------------ERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFA 488 (549)
T ss_dssp -------------TSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHH
T ss_pred -------------CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHH
Confidence 67899999999998 779999999999999999999999998743221 11346899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
+++++||+++++| + +++++.++++++++ .++|++|||.|.+..
T Consensus 489 ~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~~~ 531 (549)
T 3eya_A 489 RIAEACGITGIRV---E-KASEVDEALQRAFS-IDGPVLVDVVVAKEE 531 (549)
T ss_dssp HHHHHTTSEEEEE---C-SGGGHHHHHHHHHH-SSSCEEEEEEBCCCC
T ss_pred HHHHHcCCcEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 9999999999999 4 88999999999998 789999999998753
No 39
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.64 E-value=9.8e-16 Score=179.62 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=127.7
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEE-cCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHH
Q 004970 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL-SAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAE 188 (721)
Q Consensus 112 g~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~-s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~ 188 (721)
...+....++..|... +. + .+.|.||. |.|...+|...++.......+ ....|+||+++|.|+|+|+|.
T Consensus 458 ~~~l~~~~v~~~L~~~-l~-~------~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~ 529 (677)
T 1t9b_A 458 GSKIKPQTVIKKLSKV-AN-D------TGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAK 529 (677)
T ss_dssp TCCBCHHHHHHHHHHH-HH-T------TCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHH-hh-c------CCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhC
Confidence 3457777777777765 21 1 02455443 556444333222111110011 124689999999999999996
Q ss_pred HHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccc
Q 004970 189 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTE 257 (721)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~ 257 (721)
+ +++|||++|||+|+ |.+++|++|.+++++.+++|+|||+|++.+..+ .....
T Consensus 530 p--------------~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~ 593 (677)
T 1t9b_A 530 P--------------ESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNP 593 (677)
T ss_dssp T--------------TSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCC
T ss_pred C--------------CCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCC
Confidence 5 78999999999998 789999999999999999999999998765321 12346
Q ss_pred cHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCCC
Q 004970 258 NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPN 312 (721)
Q Consensus 258 ~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~~ 312 (721)
|+.+++++|||++++| + +.++|.++++++++ .++|++|||.|.++....+
T Consensus 594 d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~~~~~~p 643 (677)
T 1t9b_A 594 DFIKLAEAMGLKGLRV---K-KQEELDAKLKEFVS-TKGPVLLEVEVDKKVPVLP 643 (677)
T ss_dssp CHHHHHHHTTCEEEEE---C-SHHHHHHHHHHHHH-CSSCEEEEEEBCSSCCCSS
T ss_pred CHHHHHHHcCCeEEEE---C-CHHHHHHHHHHHHH-CCCcEEEEEEecCCcccCC
Confidence 8999999999999999 4 89999999999998 7899999999999876543
No 40
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.63 E-value=6.1e-16 Score=176.76 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC-cccCccccchhHHHHHHHHHHHHHh
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-VQVTTGPLGQGMANAVGLALAEKHL 191 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g-ie~~~G~lG~gl~~AvG~AlA~~~~ 191 (721)
..++...++..|... ++ +++.++.+.|....+...++....... +....|+||+++|.|+|+|+|.+
T Consensus 351 ~~~~~~~~~~~l~~~---l~-------~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~~-- 418 (528)
T 1q6z_A 351 GRLHPETVFDTLNDM---AP-------ENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEP-- 418 (528)
T ss_dssp SSBCHHHHHHHHHHH---SC-------TTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCT--
T ss_pred CCcCHHHHHHHHHhh---CC-------CCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhCC--
Confidence 346777777777655 32 467788899987766544432221101 11123999999999999999975
Q ss_pred hhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccccccHH
Q 004970 192 AARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAFTENVD 260 (721)
Q Consensus 192 ~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~~~~~~ 260 (721)
+++|||++|||+|+ +.+|+|++|.+++++.+++|+|||+|++.+..+ .....|+.
T Consensus 419 ------------~~~vv~~~GDG~~~--~~~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 484 (528)
T 1q6z_A 419 ------------ERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFR 484 (528)
T ss_dssp ------------TSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHH
T ss_pred ------------CCcEEEEECCcHHH--hhHHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHH
Confidence 67899999999999 559999999999999999999999998865431 01346899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+++++|||+++.| | +.+++.++++++++ .++|++||+.|.+
T Consensus 485 ~~a~a~G~~~~~v-~---~~~~l~~al~~a~~-~~gp~liev~~~~ 525 (528)
T 1q6z_A 485 ALAKGYGVQALKA-D---NLEQLKGSLQEALS-AKGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHHTCEEEEE-S---SHHHHHHHHHHHHT-CSSCEEEEEEBCC
T ss_pred HHHHHcCCeEEEe-C---CHHHHHHHHHHHHH-CCCcEEEEEEecC
Confidence 9999999999998 3 77999999999987 7899999999975
No 41
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.61 E-value=9.5e-16 Score=176.65 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=127.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--c--ccCccccchhHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--V--QVTTGPLGQGMANAVGLALAE 188 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--i--e~~~G~lG~gl~~AvG~AlA~ 188 (721)
..++...++..|... ++ +++.++.+.|... +...++.-..+ + ....|+||+++|.|+|+|+|.
T Consensus 359 ~~l~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~---~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~ 425 (566)
T 2vbi_A 359 AGLTNDEIVRHINAL---LT-------SNTTLVAETGDSW---FNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGS 425 (566)
T ss_dssp SCCCHHHHHHHHHHH---CC-------TTEEEEECSSHHH---HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTC
T ss_pred CccCHHHHHHHHHHh---cC-------CCCEEEECCchHH---HhhhheECCCCCEEEecCcccchhhHHHHHHHHHHhC
Confidence 357777777777655 32 4567778999654 23332221111 1 125799999999999999986
Q ss_pred HHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----ccccccHHHHH
Q 004970 189 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----IAFTENVDKRF 263 (721)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----~~~~~~~~~~~ 263 (721)
+ +++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+... .....|+.+++
T Consensus 426 ~--------------~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a 489 (566)
T 2vbi_A 426 Q--------------DRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLM 489 (566)
T ss_dssp T--------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHH
T ss_pred C--------------CCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHH
Confidence 5 78999999999998 778999999999999999999999999887643 12346899999
Q ss_pred hhCCC-----eEEEeccCCCCHHHHHHHHHHHHhcC-CCCEEEEEEEeec
Q 004970 264 EGLGW-----HVIWVKNGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIG 307 (721)
Q Consensus 264 ~a~G~-----~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~lI~~~T~kg 307 (721)
++||| ++++| + +.+++.++++++++ . ++|++||+.|.+.
T Consensus 490 ~a~G~~~~~~~~~~v---~-~~~el~~al~~a~~-~~~gp~liev~~~~~ 534 (566)
T 2vbi_A 490 EVFNAGEGHGLGLKA---T-TPKELTEAIARAKA-NTRGPTLIECQIDRT 534 (566)
T ss_dssp HHHHTTTCCCEEEEE---C-SHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred HHcCCCCCCccEEEe---C-CHHHHHHHHHHHHh-cCCCcEEEEEEeCcc
Confidence 99999 99999 4 89999999999987 5 8999999999864
No 42
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.61 E-value=8.9e-16 Score=178.60 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=125.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc--ccCccccchhHHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV--QVTTGPLGQGMANAVGLALAEKH 190 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi--e~~~G~lG~gl~~AvG~AlA~~~ 190 (721)
..++...++..|... ++ +++.||.+.|...++...++.......+ ...+|+||+++|.|+|+|+|.+
T Consensus 391 ~~~~~~~~~~~L~~~---l~-------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~- 459 (616)
T 2pan_A 391 VPVKPQRVYEEMNKA---FG-------RDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADP- 459 (616)
T ss_dssp SSBCHHHHHHHHHHH---SC-------TTEEEEECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCT-
T ss_pred CCcCHHHHHHHHHHh---CC-------CCcEEEEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCC-
Confidence 347777777777655 32 4567777888655443222111110011 1246999999999999999975
Q ss_pred hhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------------c
Q 004970 191 LAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------------I 253 (721)
Q Consensus 191 ~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------------~ 253 (721)
+++|||++|||+|+ +.+++|++|++++++.+++|+|||+|++.+..+ .
T Consensus 460 -------------~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (616)
T 2pan_A 460 -------------KRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINS 524 (616)
T ss_dssp -------------TCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTC
T ss_pred -------------CCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccccccccc
Confidence 78999999999998 668999999999999999999999998754311 0
Q ss_pred cc----cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh---cCCCCEEEEEEEeecc
Q 004970 254 AF----TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIRVTTTIGF 308 (721)
Q Consensus 254 ~~----~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~ 308 (721)
.. ..|+.+++++|||+++.| + +.++|.++++++++ ..++|++||+.|.++.
T Consensus 525 ~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 525 SEVNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp GGGTTCCCCHHHHHHHTTCEEEEE---C-SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 11 268999999999999998 4 78899999998864 1478999999999876
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.60 E-value=6.2e-16 Score=177.63 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--c--ccCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--V--QVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--i--e~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.++...++..|... ++ +++.++.|.|... +...+..-..+ + ...+|+||+++|.|+|+|+|.+
T Consensus 359 ~~~~~~~~~~l~~~---l~-------~~~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~ 425 (552)
T 1ovm_A 359 SLTQENFWRTLQTF---IR-------PGDIILADQGTSA---FGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACP 425 (552)
T ss_dssp BCCHHHHHHHHHHH---CC-------TTCEEEECTTHHH---HHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHh---cC-------CCCEEEECCchHH---HHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCC
Confidence 46777777777655 32 5678888999765 22211111112 1 1257999999999999999965
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc----c---ccccccHHHH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----E---IAFTENVDKR 262 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~----~---~~~~~~~~~~ 262 (721)
+++|||++|||+|+ |.+++|.++.+++++.+++|+|||+|++.+.. . .....|+.++
T Consensus 426 --------------~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~ 489 (552)
T 1ovm_A 426 --------------NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHI 489 (552)
T ss_dssp --------------TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGS
T ss_pred --------------CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHH
Confidence 67899999999998 88999999999999999999999999887432 1 1234689999
Q ss_pred HhhCCC----eEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 263 FEGLGW----HVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 263 ~~a~G~----~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
+++||| ++++| + +.+++.++++++++ .++|++||+.|.+
T Consensus 490 a~a~G~~~~~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~ 532 (552)
T 1ovm_A 490 PQALSLDPQSECWRV---S-EAEQLADVLEKVAH-HERLSLIEVMLPK 532 (552)
T ss_dssp TTTSCSSCCEEEEEE---C-BHHHHHHHHHHHTT-CSSEEEEEEECCT
T ss_pred HHHhCCCcCCCEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEcCc
Confidence 999999 99998 4 89999999999987 7899999999975
No 44
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.60 E-value=1.9e-15 Score=174.18 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc----ccCccccchhHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV----QVTTGPLGQGMANAVGLALAE 188 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi----e~~~G~lG~gl~~AvG~AlA~ 188 (721)
..++...++..|... ++ +++.++.|.|... +...++.-..+. ....|+||+++|.|+|+|+|.
T Consensus 363 ~~~~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~---~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~ 429 (568)
T 2wvg_A 363 APLVNAEIARQVEAL---LT-------PNTTVIAETGDSW---FNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA 429 (568)
T ss_dssp SBCCHHHHHHHHHTT---CC-------TTEEEEECSSHHH---HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHh---CC-------CCCEEEEcCcHHH---HHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhC
Confidence 346666666666544 22 4567778999654 233222211111 235799999999999999997
Q ss_pred HHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----ccccccHHHHH
Q 004970 189 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----IAFTENVDKRF 263 (721)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----~~~~~~~~~~~ 263 (721)
+ +++|||++|||+|+ +.+++|.++.+++++.+++|+|||+|++.+... .....|+.+++
T Consensus 430 ~--------------~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a 493 (568)
T 2wvg_A 430 P--------------ERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLM 493 (568)
T ss_dssp T--------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHH
T ss_pred C--------------CCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHH
Confidence 5 78999999999998 789999999999999999999999999887543 12345899999
Q ss_pred hhCCC---------eEEEeccCCCCHHHHHHHHHHHHhcC-CCCEEEEEEEeec
Q 004970 264 EGLGW---------HVIWVKNGNTGYDDIRAAIKEAKAVT-DKPTLIRVTTTIG 307 (721)
Q Consensus 264 ~a~G~---------~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~lI~~~T~kg 307 (721)
++||+ +++.| + +.+++.++++++.+ . ++|++||+.|.+.
T Consensus 494 ~a~G~~~~~~~~~~~~~~v---~-~~~el~~al~~a~~-~~~gp~liev~~~~~ 542 (568)
T 2wvg_A 494 EVFNGNGGYDSGAGKGLKA---K-TGGELAEAIKVALA-NTDGPTLIECFIGRE 542 (568)
T ss_dssp HHHHCTTSSSCCCCEEEEE---S-BHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred HHhCCCcccccCCcceEEe---C-CHHHHHHHHHHHHh-cCCCcEEEEEEcCcc
Confidence 99999 89998 4 89999999999987 5 8999999999864
No 45
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.59 E-value=1.2e-15 Score=176.05 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCCc----ccCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV----QVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~gi----e~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.++...++..|... ++ +++.++.|.|...+ ....+.-..+. ...+|+||+++|.|+|+|+|.+
T Consensus 376 ~~~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~~---~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~ 442 (570)
T 2vbf_A 376 PLSQDRLWQAVESL---TQ-------SNETIVAEQGTSFF---GASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADK 442 (570)
T ss_dssp BCCHHHHHHHHHHH---CC-------SSEEEEECTTHHHH---HHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCT
T ss_pred CcCHHHHHHHHHHh---cC-------CCCEEEEeCCHHHH---HHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCC
Confidence 46777777777655 32 45777789997642 22111111111 2357999999999999999975
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------ccccccHHHH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------IAFTENVDKR 262 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------~~~~~~~~~~ 262 (721)
+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+... .....|+.++
T Consensus 443 --------------~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~ 506 (570)
T 2vbf_A 443 --------------ESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKL 506 (570)
T ss_dssp --------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGH
T ss_pred --------------CCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHH
Confidence 78999999999998 679999999999999999999999998865321 1234689999
Q ss_pred HhhCCCe-----EEEeccCCCCHHHHHHHHHHH-HhcCCCCEEEEEEEee
Q 004970 263 FEGLGWH-----VIWVKNGNTGYDDIRAAIKEA-KAVTDKPTLIRVTTTI 306 (721)
Q Consensus 263 ~~a~G~~-----~~~v~dG~~d~~~l~~al~~a-~~~~~~P~lI~~~T~k 306 (721)
+++|||+ +++| + +.+++.++++++ .+ .++|++||+.|.+
T Consensus 507 a~a~G~~~~~~~~~~v---~-~~~el~~al~~a~~~-~~~p~liev~~~~ 551 (570)
T 2vbf_A 507 PETFGATEDRVVSKIV---R-TENEFVSVMKEAQAD-VNRMYWIELVLEK 551 (570)
T ss_dssp HHHTTCCTTTEEEEEE---C-BHHHHHHHHHHHHHC-TTSEEEEEEECCT
T ss_pred HHHcCCCcCCcceEEe---c-CHHHHHHHHHHHHhc-CCCcEEEEEEcCc
Confidence 9999998 8898 4 899999999984 55 7899999999975
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.59 E-value=1.6e-15 Score=174.59 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCCC--c--ccCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS--V--QVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~g--i--e~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.++...++..|... ++ +++.++.|.|... +...+..-..+ + ...+|+||+++|.|+|+|+|.+
T Consensus 364 ~~~~~~~~~~l~~~---l~-------~~~iv~~d~G~~~---~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~ 430 (563)
T 2vk8_A 364 PLKQEWMWNQLGNF---LQ-------EGDVVIAETGTSA---FGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAE 430 (563)
T ss_dssp BCCHHHHHHHHTTT---CC-------TTCEEEECTTHHH---HHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHh---CC-------CCCEEEECCchHH---HHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCc
Confidence 46666555555433 22 5678888999654 22211111111 1 1357999999999999999988
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-------ccccccHHHH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-------IAFTENVDKR 262 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-------~~~~~~~~~~ 262 (721)
.++ .+++|||++|||+|+ |.+++|++|.+++++.+++|+|||+|++.+... .....|+.++
T Consensus 431 ~~~----------~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~ 498 (563)
T 2vk8_A 431 EID----------PKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSL 498 (563)
T ss_dssp HHC----------TTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGH
T ss_pred ccC----------CCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHH
Confidence 543 257899999999998 789999999999999999999999999864321 1134689999
Q ss_pred HhhCCCe---EEEeccCCCCHHHHHHHHH-HHHhcCCCCEEEEEEEee
Q 004970 263 FEGLGWH---VIWVKNGNTGYDDIRAAIK-EAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 263 ~~a~G~~---~~~v~dG~~d~~~l~~al~-~a~~~~~~P~lI~~~T~k 306 (721)
+++|||+ +++| + +.+++.++++ ++.+..++|++|+++|.+
T Consensus 499 a~a~G~~~~~~~~v---~-~~~el~~al~~~a~~~~~~p~liev~~~~ 542 (563)
T 2vk8_A 499 LPTFGAKDYETHRV---A-TTGEWDKLTQDKSFNDNSKIRMIEVMLPV 542 (563)
T ss_dssp HHHTTCSSEEEEEE---C-BHHHHHHHHTCTTTTSCSSEEEEEEECCT
T ss_pred HHHhCCCCCcEEEe---c-CHHHHHHHHHHHHHhCCCCcEEEEEEeCc
Confidence 9999999 9998 4 7899999999 777623479999999975
No 47
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.57 E-value=1.4e-15 Score=175.19 Aligned_cols=159 Identities=13% Similarity=0.187 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCC--CCeE-EEcCCcchHHHHHHHHHhCCCCc-ccCccccchhHHHHHHHHHHHH
Q 004970 114 PMGCAPMGHILYDEVMRYNPKNPYWFN--RDRF-VLSAGHGCMLQYALLHLAGYDSV-QVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 114 ~ls~~~l~~aL~~~~l~~~~~~p~~~~--~D~~-V~s~Gh~~~~~y~~l~l~G~~gi-e~~~G~lG~gl~~AvG~AlA~~ 189 (721)
.++...++..|... ++ + ++.| +.|.|... +......+...+ ...+|+||+|+|.|+|+|+|.+
T Consensus 373 ~l~~~~v~~~l~~~---l~-------~~~~~iv~~~d~G~~~---~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~ 439 (565)
T 2nxw_A 373 PIAPMDIARAVNDR---VR-------AGQEPLLIAADMGDCL---FTAMDMIDAGLMAPGYYAGMGFGVPAGIGAQCVSG 439 (565)
T ss_dssp BCCHHHHHHHHHHH---HH-------TTCCCCEEEECSSHHH---HHHTTSCCSCEECCTTTCCTTCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHh---cc-------cccCCEEEEecchHHH---HHHHhCCCcEEEccCccccccccchHHHHHHHhCC
Confidence 47777777777765 32 4 5676 78999654 211111111011 1246999999999999999975
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc------ccccccHHHHH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE------IAFTENVDKRF 263 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~------~~~~~~~~~~~ 263 (721)
+++|||++|||+|+ |.+++|.+|.+++++.+++|+|||+|++.+..+ .....|+.+++
T Consensus 440 --------------~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a 503 (565)
T 2nxw_A 440 --------------GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMA 503 (565)
T ss_dssp --------------TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHT
T ss_pred --------------CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHH
Confidence 67899999999999 999999999999999999999999998865321 22346899999
Q ss_pred hhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCE-EEEEEEee
Q 004970 264 EGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT-LIRVTTTI 306 (721)
Q Consensus 264 ~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~-lI~~~T~k 306 (721)
++|||++++| + +.+++.++++++.+ .++|+ +||+.|.+
T Consensus 504 ~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~~liev~~~~ 542 (565)
T 2nxw_A 504 AGMGGDGVRV---R-TRAELKAALDKAFA-TRGRFQLIEAMIPR 542 (565)
T ss_dssp GGGTSEEEEE---C-BHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred HHcCCCEEEe---C-CHHHHHHHHHHHHh-cCCCeEEEEEEccc
Confidence 9999999999 4 88999999999987 67898 99999975
No 48
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.56 E-value=1.4e-14 Score=167.05 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=123.4
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC---CcccCccccchhHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD---SVQVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~---gie~~~G~lG~gl~~AvG~AlA~~ 189 (721)
..++...++..|... ++ +| +++.++.+.|+...+...++.. ..+ ......|+||+++|.|+|+++| +
T Consensus 373 ~~~~~~~~~~~l~~~-l~-~~------~~~iv~~dg~~~~~~~~~~~~~-~~p~~~~~~g~~g~~G~~l~~AiGaala-~ 442 (568)
T 2c31_A 373 GMMNYSNSLGVVRDF-ML-AN------PDISLVNEGANALDNTRMIVDM-LKPRKRLDSGTWGVMGIGMGYCVAAAAV-T 442 (568)
T ss_dssp TCBCHHHHHHHHHHH-HH-HC------CSSEEEEESSHHHHHHHHHCCC-CSTTCEEESTTTTCSSCHHHHHHHHHHH-H
T ss_pred CCcCHHHHHHHHHHH-hc-CC------CCeEEEECChhHHHHHHHHhcc-cCCCeEEcCCCCccccccHHHHHHHHhC-C
Confidence 457777777777765 22 12 3456666767665433322111 111 1123569999999999999998 5
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc-cccccc------c--ccccccHH
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SIDGDT------E--IAFTENVD 260 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~-~i~~~~------~--~~~~~~~~ 260 (721)
+++|||++|||+|+ |.+++|.++.+++++.+++|+|||+| ++.... . .....|+.
T Consensus 443 --------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~ 506 (568)
T 2c31_A 443 --------------GKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYD 506 (568)
T ss_dssp --------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHH
T ss_pred --------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHH
Confidence 67899999999998 88999999999999989999999984 443211 0 02346899
Q ss_pred HHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 261 KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 261 ~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
+++++||+++++| + +.+++.++++++.+ .++|++|++.|.+..
T Consensus 507 ~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~~ 549 (568)
T 2c31_A 507 MMMEAFGGKGYVA---N-TPAELKAALEEAVA-SGKPCLINAMIDPDA 549 (568)
T ss_dssp HHHHTTTCEEEEE---S-SHHHHHHHHHHHHH-HTSCEEEEEEBCTTS
T ss_pred HHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 9999999999999 4 89999999999987 789999999998753
No 49
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.55 E-value=1.3e-14 Score=167.09 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=123.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cc--ccCccccchhHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SV--QVTTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gi--e~~~G~lG~gl~~AvG~AlA~~ 189 (721)
..++...++..|... ++ +| +++.++.+.||...+...++. ...+ .. ....|+||+++|.|+|+++| +
T Consensus 368 ~~~~~~~~~~~l~~~-l~-~~------~d~ivv~dg~~~~~~~~~~~~-~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~ 437 (564)
T 2q28_A 368 QPLNYFNALSAVRDV-LR-EN------QDIYLVNEGANTLDNARNIID-MYKPRRRLDCGTWGVMGIGMGYAIGASVT-S 437 (564)
T ss_dssp SSBCHHHHHHHHHHH-HT-TC------TTCEEEEESSHHHHHHHHHSC-CCSSSCEEESTTTTCTTCHHHHHHHHHHH-H
T ss_pred CCcCHHHHHHHHHHH-hc-CC------CCEEEEECCchHHHHHHHHhc-ccCCCeEecCCCCCcccchHHHHHHHhhc-C
Confidence 457788888877765 22 12 345555676666543222211 1111 11 22569999999999999998 5
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc-cccccc-------c---cccccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SIDGDT-------E---IAFTEN 258 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~-~i~~~~-------~---~~~~~~ 258 (721)
+++|||++|||+|+ |.+++|.++.+++++.+++|+|||+| ++.... . .....|
T Consensus 438 --------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d 501 (564)
T 2q28_A 438 --------------GSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHAR 501 (564)
T ss_dssp --------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCC
T ss_pred --------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCC
Confidence 67899999999998 78899999999999999999999984 553211 1 112468
Q ss_pred HHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeecc
Q 004970 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 259 ~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 308 (721)
+.+++++||+++++| + +.+++.++++++.+ .++|++|++.|.+..
T Consensus 502 ~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~~ 546 (564)
T 2q28_A 502 YDKLMDAFRGVGYNV---T-TTDELRHALTTGIQ-SRKPTIINVVIDPAA 546 (564)
T ss_dssp GGGGGGGGTCEEEEE---C-SHHHHHHHHHHHHH-HTSCEEEEEEBCTTS
T ss_pred HHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 999999999999999 4 89999999999987 789999999998753
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.52 E-value=1.1e-14 Score=169.15 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=123.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHhCCC-Cccc--CccccchhHHHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-SVQV--TTGPLGQGMANAVGLALAEK 189 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~G~~-gie~--~~G~lG~gl~~AvG~AlA~~ 189 (721)
..++...++..|... ++ +++.++.+.|....+...++.....+ .+-. ..|.+|+++|.|+|+|+| +
T Consensus 403 ~~~~~~~~~~~L~~~---lp-------~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~ 471 (604)
T 2x7j_A 403 DVSFEGNLYRILQHL---VP-------ENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-T 471 (604)
T ss_dssp CTTSHHHHHHHHHHH---SC-------TTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHh---CC-------CCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-C
Confidence 357777787777765 32 46777778876554432221111101 1111 247899999999999998 4
Q ss_pred HhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc-------------ccc
Q 004970 190 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-------------AFT 256 (721)
Q Consensus 190 ~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-------------~~~ 256 (721)
+++|||++|||+|+ +.+++|++|.+++++.+++|+|||+|++.+.... ...
T Consensus 472 --------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~ 535 (604)
T 2x7j_A 472 --------------KAPVTLVIGDLSFY--HDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTG 535 (604)
T ss_dssp --------------TSCEEEEEEHHHHH--HTGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCC
T ss_pred --------------CCcEEEEEccHHHH--hHHHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCC
Confidence 56899999999998 6688999999999999999999999998553210 123
Q ss_pred ccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeec
Q 004970 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307 (721)
Q Consensus 257 ~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 307 (721)
.|+.+++++||+++++| + +.+++.++++++.+ .++|++|+|.|.+.
T Consensus 536 ~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~ 581 (604)
T 2x7j_A 536 LDFKHAAALYGGTYSCP---A-SWDEFKTAYAPQAD-KPGLHLIEIKTDRQ 581 (604)
T ss_dssp CCTHHHHHHTTCEEECC---S-SHHHHHHHCCCCCS-SCCEEEEEEECCHH
T ss_pred CCHHHHHHHcCCeEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCcc
Confidence 58999999999999998 4 88999999998886 78999999999763
No 51
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.45 E-value=1.4e-13 Score=158.16 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHH---hCCCCccc---CccccchhHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL---AGYDSVQV---TTGPLGQGMANAVGLAL 186 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l---~G~~gie~---~~G~lG~gl~~AvG~Al 186 (721)
..++...++..|... ++ +++.++.+.+ .++.|...+. .++ .+.. ..|.+|+ +|.|+|+++
T Consensus 365 ~~~~~~~~~~~l~~~---l~-------~~~iv~~g~~--~~~~~~~~~~~~~~~~-~~~~~~g~~g~~G~-l~~A~Gaa~ 430 (556)
T 3hww_A 365 DAFGEAQLAHRICDY---LP-------EQGQLFVGNS--LVVRLIDALSQLPAGY-PVYSNRGASGIDGL-LSTAAGVQR 430 (556)
T ss_dssp CSSSHHHHHHTGGGT---CC-------TTCEEEECSS--HHHHHHHHHCCCCTTC-CEEECCSSCCSSSH-HHHHHHHHH
T ss_pred cCcCHHHHHHHHHHh---CC-------CCCeEEEeCC--cHHHHHHHhccCCCCc-eEEecCcccccccH-HHHHHHHHh
Confidence 457777666655544 32 4566665544 3332322111 121 2222 3456666 999999999
Q ss_pred HHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcccccccc-----------ccc
Q 004970 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-----------IAF 255 (721)
Q Consensus 187 A~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~-----------~~~ 255 (721)
| + +++|||++|||+|+ |.+++|+++.+++++.+++|+||++|++.+... ...
T Consensus 431 a-~--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~ 493 (556)
T 3hww_A 431 A-S--------------GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQ 493 (556)
T ss_dssp H-H--------------CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC-----------------CCCCC
T ss_pred c-C--------------CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCC
Confidence 8 4 67899999999998 889999999999998889999999888765321 113
Q ss_pred cccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 256 TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 256 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
..|+.+++++||+++++| + +.+++.++++++++ .++|++|||.|.+
T Consensus 494 ~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~ 539 (556)
T 3hww_A 494 NVHFEHAAAMFELKYHRP---Q-NWQELETAFADAWR-TPTTTVIEMVVND 539 (556)
T ss_dssp CCCSHHHHHHTTCEEECC---S-SHHHHHHHHHHHTT-SSSEEEEEEECCS
T ss_pred CCCHHHHHHHcCCcEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCc
Confidence 468999999999999998 4 88999999999987 7899999999865
No 52
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.39 E-value=2.2e-13 Score=157.25 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCCCCCCCeEEEcCCcchHHHHHHHHHh-CCCCc--ccCccccch--hHHHHHHHHHH
Q 004970 113 LPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA-GYDSV--QVTTGPLGQ--GMANAVGLALA 187 (721)
Q Consensus 113 ~~ls~~~l~~aL~~~~l~~~~~~p~~~~~D~~V~s~Gh~~~~~y~~l~l~-G~~gi--e~~~G~lG~--gl~~AvG~AlA 187 (721)
..++...++..|... ++ +++.++.+.|.... +...+.. ...+. -.+.|.+|. ++|.|+|+|+
T Consensus 384 ~~~~~~~~~~~l~~~---l~-------~~~iv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~- 450 (578)
T 3lq1_A 384 TILEEGKIVAELRRL---LP-------DKAGLFIGNSMPIR--DVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV- 450 (578)
T ss_dssp ---CTTHHHHHHHHH---SC-------SEEEEEECSSHHHH--HHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHh---CC-------CCCeEEEeCccHHH--HHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc-
Confidence 346666677777665 32 45666667664332 2222221 11121 224455554 7999999963
Q ss_pred HHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccc---c----------cc
Q 004970 188 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT---E----------IA 254 (721)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~---~----------~~ 254 (721)
+ +++|||++|||+|+ |.+++|++|.+++++.+++|+||++|++.+.. + ..
T Consensus 451 -~--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~ 513 (578)
T 3lq1_A 451 -V--------------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTS 513 (578)
T ss_dssp -T--------------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC------------------------
T ss_pred -C--------------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCC
Confidence 2 56899999999998 88999999999999888999999999886532 1 01
Q ss_pred ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCC
Q 004970 255 FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSP 311 (721)
Q Consensus 255 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 311 (721)
...|+.+++++||+++++| + +.+++.++++++++ .++|++||+.|.+-....
T Consensus 514 ~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~~~~ 565 (578)
T 3lq1_A 514 TELDFRFAAAFYDADYHEA---K-SVDELEEAIDKASY-HKGLDIIEVKTNRHENKA 565 (578)
T ss_dssp -CCCTHHHHHHTTCEEEEC---C-SHHHHHHHHHHHTT-SSSEEEEEEC--------
T ss_pred CCCCHHHHHHHcCCceEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCccccHH
Confidence 2358999999999999999 4 89999999999987 789999999998754433
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.21 E-value=5.3e-10 Score=137.91 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=147.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCC-CCCCChhhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG-PTHQPIEHL 537 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG-~THq~~edi 537 (721)
.+.+....+|..+++++.|.+..| .+++++|-+.=+..|.+.|+..+...+|++++....+. .+ .| .+|-...|.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aG--aR~~t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g-~~-~glsi~~~hsd~ 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAG--ALTTTFTASQGLLLMIPNMYKISGELLPGVFHVTARAI-AA-HALSIFGDHQDI 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTT--CCEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCC-CS-SSBCCSCCSHHH
T ss_pred ceEEEecCChHHHHHHHHHHHHcC--ChHhhhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCc-cC-CCCcCCCchhhH
Confidence 478899999999999999999999 49999987777888889998777778998877643332 21 11 222222343
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC-------CC--CCC------CC------------C
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ-------KL--PHL------AG------------T 587 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl~r~-------~~--~~~------~~------------~ 587 (721)
+....+|+.|++|++++|+..++..|++ +...|+++++..- ++ +.. .+ .
T Consensus 130 -~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~ 208 (1231)
T 2c42_A 130 -YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMN 208 (1231)
T ss_dssp -HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCC
T ss_pred -HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccC
Confidence 4456799999999999999999988732 2578999987531 11 110 00 0
Q ss_pred ccccccCcc------------------------------------------EEEecCCCCCCCCEEEEEeChhHHHHHHH
Q 004970 588 SIDGVEKGA------------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKA 625 (721)
Q Consensus 588 ~~~~~~~G~------------------------------------------~~v~~~~~~~g~dvtIva~G~~v~~al~A 625 (721)
+..++..|. +...... +.|++||++|+++..+.+|
T Consensus 209 p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~---dAd~vIVa~Gs~~~~~~eA 285 (1231)
T 2c42_A 209 PEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAP---DAERVIVSMGSSCETIEEV 285 (1231)
T ss_dssp TTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECT---TCSEEEEECSTHHHHHHHH
T ss_pred CCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCC---CCCEEEEEeCHHHHHHHHH
Confidence 000111121 2222221 5899999999999999999
Q ss_pred HHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccc
Q 004970 626 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 677 (721)
Q Consensus 626 a~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~ 677 (721)
++.|+++|+++.||+++++.||+.+.+. ..++...+.++|+|+....|+
T Consensus 286 v~~L~~~G~kvgvl~lr~~rPfp~~~i~---~~l~~~~k~i~VvE~~~~~g~ 334 (1231)
T 2c42_A 286 INHLAAKGEKIGLIKVRLYRPFVSEAFF---AALPASAKVITVLDRTKEPGA 334 (1231)
T ss_dssp HHHHHTTTCCEEEEEESEEESCCHHHHH---HTSCTTCCEEEEEESSCCTTC
T ss_pred HHHHHhcCCceEEEEEEEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCCC
Confidence 9999999999999999999999988663 344323233588898855553
No 54
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.02 E-value=3.6e-10 Score=102.93 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccchhhhcCCce
Q 004970 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGK 686 (721)
Q Consensus 607 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~~~~v~~~~~ 686 (721)
+.|++||++|+++..|++|++.|+++|++++||++++++|||.+.+. .+++.... ++++|++...|+++.+..
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~---~~~~~~~~-vvvvE~~~~G~l~~~i~~--- 85 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVK---NVLSSANL-VIDVESNYTAQAAQMIKL--- 85 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHH---HHHTTCSC-CCCCCCCCCCCHHHHHHH---
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHH---HHHcCCCE-EEEEECCCCCcHHHHHHH---
Confidence 68999999999999999999999999999999999999999998753 33443334 499999877778776631
Q ss_pred EEEec--cCC--CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 004970 687 AIGID--RFG--ASAPAGKIYKEFGITAEAVITAAKEV 720 (721)
Q Consensus 687 ~ig~d--~f~--~~g~~~~l~~~~gl~~e~I~~~i~~l 720 (721)
..+.+ .+. ..|. -++++.|.+.++++
T Consensus 86 ~~~~~~~~~i~~~~G~--------~~~~~ei~~~i~~~ 115 (118)
T 3ju3_A 86 YTGIDIKNKILKYNGR--------HMTEDEILKSAKEI 115 (118)
T ss_dssp HHCCCCCCCCCCBTTB--------CCCHHHHHHHHHHH
T ss_pred HcCCCceeEEeeeCCe--------eCCHHHHHHHHHHH
Confidence 11211 111 1222 47888888888765
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.71 E-value=2.1e-08 Score=123.83 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=83.0
Q ss_pred CcEEEEEECCC-ccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccc-----------------cccccHHHHHhh
Q 004970 204 DHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-----------------AFTENVDKRFEG 265 (721)
Q Consensus 204 ~~~vv~viGDG-~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~-----------------~~~~~~~~~~~a 265 (721)
++.|||+.||| +++ |.+.+|.++.+++++.+++|+||+.|++.+.... ....|+.+++++
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 57899999999 898 8888999999999999999999999987763211 012589999999
Q ss_pred CCCeEEEecc-CCCCHHHHHHHHHHHHhcCCCCEEEEEEEee
Q 004970 266 LGWHVIWVKN-GNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306 (721)
Q Consensus 266 ~G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~lI~~~T~k 306 (721)
||+.++..+. +. +++++.++|++|.+ .++|++|++.+.-
T Consensus 1031 ~G~~~va~~~v~~-~~~~l~~al~eAl~-~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1031 YGYVYVATVSMGY-SKQQFLKVLKEAES-FPGPSLVIAYATC 1070 (1231)
T ss_dssp TSSSEEEEECTTT-CHHHHHHHHHHHHH-SSSCEEEEEECCC
T ss_pred CCCCEEEEEeccC-CHHHHHHHHHHHHh-cCCCEEEEEeecC
Confidence 9999986533 24 89999999999998 8999999999764
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=93.82 E-value=0.25 Score=56.61 Aligned_cols=115 Identities=7% Similarity=-0.100 Sum_probs=83.5
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++-+ ..|++++.+|.|+|...+ +|.+ .|..+-+..++..|..+.+.+.||+++........-..| .+|.+...
T Consensus 45 ~~i~~-~~E~~Aa~~A~GyAr~tg--k~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQV-KHEEVGAMAAVMQSKFGG--NLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMD-AFQELNQN 120 (590)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHTTC--CCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCCH
T ss_pred eEEee-CCHHHHHHHHHHHHHHHC--CCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCCCC-cccccCHH
Confidence 55554 899999999999999754 4444 467777777788888877889999998755444321122 46777788
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQK 580 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~~ 580 (721)
.+++.+-.. .+.+.+++++..+++.|++ ...+|++| +|..-
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 999998766 5667777777766666553 34599999 98753
No 57
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.66 E-value=0.5 Score=53.83 Aligned_cols=117 Identities=20% Similarity=0.108 Sum_probs=83.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ ..|++++-+|-|+|...+ +|.+ .|..+=...++..|.++.+.+.||+++........-..+..||.++.
T Consensus 49 i~~i~~-~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVLT-RHEFTAGVAADVLARITG--RPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDS 125 (573)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHC--SCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCH
T ss_pred CeEEee-CCHHHHHHHHHHHHHHHC--CCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCH
Confidence 455554 899999999999998643 6655 46777777788888888888999998865444432212135888888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
..+++.+..... ...+++++...++.|++ ...+|++|-+|..
T Consensus 126 ~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKYAV-ELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhEEE-EcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 999998876544 44556666666665553 2458999998754
No 58
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.58 E-value=0.37 Score=55.14 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=81.1
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++.+ .-|++++-+|-|+|...+ +|.+ .|..+-...++..|..+-+.+.||+++........-..|..||.++..
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg--~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKD--RSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHT--SCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHC--CCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChh
Confidence 66665 899999999999998543 4433 578887777888888888899999988644443322122168888888
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
. ++.+..... ...+++++...++.|++ ...+|++|-+|..
T Consensus 122 ~-~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARSTQ-RVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSEEE-ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEEEe-ecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 8 888776544 44556666666665553 3458999999864
No 59
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.07 E-value=0.56 Score=53.22 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=82.0
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCC-hh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP-IE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~-~e 535 (721)
=|++.+ ..|++++.+|.|+|...+ +|.+ .|..+=+..++..|.++-+.+.||+++........-..| .||. ++
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~Q~~~d 117 (563)
T 2uz1_A 42 VPIIDT-RHEAAAGHAAEGYARAGA--KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETN-TLQAGID 117 (563)
T ss_dssp CCEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTSC-CTTCCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCCch-hhhhhcc
Confidence 566665 899999999999998633 5554 356666677777888877889999988654444322223 4787 88
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
...+++.+-... +...+++++...++.|++ ...+|++|-+|..
T Consensus 118 ~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 118 QVAMAAPITKWA-HRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHGGGCSEE-EECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHhhhhhceE-EEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 889999887654 444566666666665553 3569999998865
No 60
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.69 E-value=0.55 Score=53.40 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=78.1
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ .-|++++-+|.|+|...+ +|.+ .|..+=+..++..|.++-+.+.||+++........- +-..||.++.
T Consensus 49 i~~v~~-~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~-~~~~~Q~~d~ 124 (566)
T 1ozh_A 49 IRIIPV-RHEANAAFMAAAVGRITG--KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADK-AKQVHQSMDT 124 (566)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC-------CCCH
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHHC--CCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccC-CCCcccccCH
Confidence 366665 899999999999998533 5644 467777777777888877889999988644333321 1134788888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~Irl~r~ 579 (721)
..+++.+..... ...+++++...++.|+ ....+|++|-+|..
T Consensus 125 ~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 125 VAMFSPVTKYAI-EVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHGGGCSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhheEE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 899998876544 4455666655555544 33469999998764
No 61
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.66 E-value=0.62 Score=53.22 Aligned_cols=116 Identities=16% Similarity=0.044 Sum_probs=83.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++.+ ..|++++.+|.|+|...+ +|.+ .|..+=...++..|.++.+.+.||+++........-..| .+|.++.
T Consensus 51 i~~i~~-~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~-~~Q~~d~ 126 (590)
T 1ybh_A 51 IRNVLP-RHEQGGVFAAEGYARSSG--KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPI 126 (590)
T ss_dssp CEECCC-SSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred ccEEee-CCHHHHHHHHHHHHHHHC--CCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCC-cccccCH
Confidence 356655 899999999999998632 4554 467776667777788778889999988654433322123 4777888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+-.. .+...+++++..+++.|++. .++|++|-+|..
T Consensus 127 ~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 127 VEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 8999988776 45556778888888877752 468999998753
No 62
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.65 E-value=0.72 Score=52.30 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=83.0
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++- ..-|++++-+|-|+|..-+ +|-+ .|..+=...++..|..+-+.+.||+++........-..| .||.++..
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG--~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g~~-~~Q~~d~~ 123 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSK--QPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCG-ANQAIRQP 123 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHC--SCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSSSS-CTTCCCCT
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhC--CCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhccC-CCccccHH
Confidence 5554 3689999999999997433 5555 467777777777888888889999988644333322123 48888888
Q ss_pred HHHhcCCCcEEEeeCC-----HHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 004970 538 ASFRAMPNILMLRPAD-----GNETAGAYKVAVAN-RKRPSILALSRQ 579 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d-----~~e~~~~l~~a~~~-~~~P~~Irl~r~ 579 (721)
.+++.+-......+.- +.++..+++.|+.. .++|++|-+|..
T Consensus 124 ~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 124 GMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp TTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred HHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 8998887765554432 35688899998853 468999999874
No 63
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=90.52 E-value=0.89 Score=52.89 Aligned_cols=115 Identities=14% Similarity=0.028 Sum_probs=82.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++-+ .-|++++.+|-|+|...+ +|.+ .|+.+=...++..|.++-+.+.||+++........-.. ..+|.++.
T Consensus 121 i~~v~~-~hE~~Aa~aAdGyAr~tG--kpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~g~-~a~Q~~Dq 196 (677)
T 1t9b_A 121 FNFVLP-KHEQGAGHMAEGYARASG--KPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGT-DAFQEADV 196 (677)
T ss_dssp SEEECC-SSHHHHHHHHHHHHHHHS--SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTTTS-CCTTCCCH
T ss_pred CeEEEe-CChHHHHHHHHHHHHHHC--CCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhcCC-CCccccCH
Confidence 366655 999999999999998543 5544 46777777777888888888999998864433332112 24677888
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSR 578 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r 578 (721)
..+++.+-...+. ..+++++...++.|++ ...+|++|-+|+
T Consensus 197 ~~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 197 VGISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 8999988766544 4567778777777775 247899999883
No 64
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.73 E-value=0.76 Score=52.67 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=80.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++-+ .-|++++-+|-|+|...+ +|.+ .|..+=...++..|.++-+.+.||+++....... .|. | .+|.++
T Consensus 70 i~~i~~-~hE~~Aa~aA~GyAr~tg--kpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~-~-~~Q~~d 144 (604)
T 2x7j_A 70 ISVHVQ-IDERSAGFFALGLAKAKQ--RPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREV-G-APQAIN 144 (604)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSSS-C-CTTCCC
T ss_pred ceEEEe-cChHHHHHHHHHHHHhhC--CCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhCC-C-CCCcCc
Confidence 366665 899999999999998543 5654 4677777777778888788899999886443333 232 2 467778
Q ss_pred hhHHHhcCCCcEEEe--eCC--------HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLR--PAD--------GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~--P~d--------~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
...+++.+-...... |.+ +..+..+++.|....++|++|-+|..
T Consensus 145 ~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 145 QHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 888888887765444 343 33455555555533579999999865
No 65
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.62 E-value=1.6 Score=49.96 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=82.3
Q ss_pred ccccCCchHHHHHHHHHHHHhc-CCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 460 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~-G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
|++-+ ..|++++.+|.|+|.. |+ +|.+ .|..+=...++..|..+.+.+.||+++........-..| .+|.++.
T Consensus 67 ~~i~~-~~E~~Aa~~A~GyAr~tgg--~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-~~Q~~d~ 142 (616)
T 2pan_A 67 RHILA-RHVEGASHMAEGYTRATAG--NIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKE-DFQAVDI 142 (616)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHSTT--CCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCC--CceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCcc-cccccCH
Confidence 55544 8999999999999986 33 4443 467776677788888888889999988654443322222 3677777
Q ss_pred hHHHhcCCCcEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 004970 537 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~Irl~r~ 579 (721)
..+++.+-..... ..++.++..+++.|++. ..+|++|-+|..
T Consensus 143 ~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMAVT-VREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhhcc-cCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 8899988776554 45677887777777652 468999988753
No 66
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=89.39 E-value=0.83 Score=51.34 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
-|++.+ ..|++++.+|.|+|+..+ +|.+ .|..+=+..++..|..+.+.+.||+++....... .+. |..++.++
T Consensus 39 i~~i~~-~~E~~Aa~~A~Gyar~tg--~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~~q~~~d 114 (528)
T 1q6z_A 39 FRYILA-LQEACVVGIADGYAQASR--KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV-EALLTNVD 114 (528)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTT-TCTTCCTT
T ss_pred CcEEEE-CcHHHHHHHHHHHHHHhC--CCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCC-Cccccccc
Confidence 356654 899999999999998632 5554 3455556667777877778899999886443333 243 32222257
Q ss_pred hhHHHhcCCCcEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCCC
Q 004970 536 HLASFRAMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQK 580 (721)
Q Consensus 536 dia~lr~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~Irl~r~~ 580 (721)
...+++.+.... +.+.+++++...++ .|.....+|++|-+|..-
T Consensus 115 ~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 115 AANLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GGGSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 778888777654 34445555544444 444345689999998753
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=88.71 E-value=1.6 Score=49.25 Aligned_cols=113 Identities=12% Similarity=-0.043 Sum_probs=77.4
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhh
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edi 537 (721)
|++.+ .-|++++-+|-|+|...+ +|.+ .|+.+=...++..|.++-..+.||+++........-..| .+|.+...
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg--~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~~~-~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSG--ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSG-YFQETHPQ 118 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTTSC-CTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHhC--CCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcCCC-CCCccCHH
Confidence 56654 899999999999997543 4555 467776677777888888899999988644333321122 46777888
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcC
Q 004970 538 ASFRAMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSR 578 (721)
Q Consensus 538 a~lr~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~Irl~r 578 (721)
.+++.+-..... ..+++++...++ .|.. ..+|++|-+|.
T Consensus 119 ~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~ 161 (549)
T 3eya_A 119 ELFRECSHYCEL-VSSPEQIPQVLAIAMRKAVL-NRGVSVVVLPG 161 (549)
T ss_dssp HHTSTTCSEEEE-CCSGGGHHHHHHHHHHHHHH-TTSEEEEEEEH
T ss_pred HHHhhhhheEEE-eCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCh
Confidence 899887765433 445555555444 4444 57999999875
No 68
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=88.60 E-value=1.1 Score=51.03 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~ed 536 (721)
=|++-+ .-|++++-+|-|+|...+ +|-+ .|..+=...++..|..+-+.+.||+++........-..| .+|.++.
T Consensus 50 i~~i~~-~hE~~Aa~aAdGyAr~tG--~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Qe~d~ 125 (578)
T 3lq1_A 50 LKIYVD-VDERSAGFFALGLAKASK--RPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVG-APQAMDQ 125 (578)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHC--CCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTTCCCC
T ss_pred ceEEEe-cCcHHHHHHHHHHHHhhC--CCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCCCcCH
Confidence 366665 799999999999997543 5555 467776677777788878889999988643333221122 4677777
Q ss_pred hHHHhcCCCcEEE--eeCCHH--------HHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 537 LASFRAMPNILML--RPADGN--------ETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 537 ia~lr~iPnl~V~--~P~d~~--------e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
..+++.+-..... .|.+.. .+..+++.|....++|++|-+|..
T Consensus 126 ~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 126 LHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 8888887765444 455533 345555555544589999999864
No 69
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=87.73 E-value=1.7 Score=49.20 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=80.5
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCccc-CC-CCCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GE-DGPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~~-g~-dG~THq~~ 534 (721)
=|++.+ .-|++++-+|-|+|...+ +|.+ .|..+=...++..|..+-+.+.||+++........ +. .| .+|.+
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg--~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~ 121 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQ--KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQG-DYEEL 121 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-ccccc
Confidence 466665 899999999999998743 5644 46777777778888888889999998864333321 21 12 46778
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+...+++.+-...... .+++++...++.|++ ..++|++|-+|..
T Consensus 122 dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 122 DQMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CHHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cHHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 8889999887765444 344455555554443 3579999998764
No 70
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=87.72 E-value=2.3 Score=48.20 Aligned_cols=118 Identities=17% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCC-CCC
Q 004970 458 EERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP 533 (721)
Q Consensus 458 p~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~T-Hq~ 533 (721)
+.+.+=...-|++++-+|.|+|...+ +|.+ .|..+=...++..|..+.+.+.||+++....... .|.+... ||.
T Consensus 58 ~~~~~i~~~~E~~Aa~~A~GyAr~tg--kp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~ 135 (565)
T 2nxw_A 58 QILPLHTLSHEPAVGFAADAAARYSS--TLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135 (565)
T ss_dssp CSSCEEECSSHHHHHHHHHHHHHHHT--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC----
T ss_pred CCcEEEecCcHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeec
Confidence 33333445999999999999998543 5554 4667766777777877778899999886543333 3433333 433
Q ss_pred --hh-hhHHHhcCCCcEEEeeCCHH----HHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 534 --IE-HLASFRAMPNILMLRPADGN----ETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 534 --~e-dia~lr~iPnl~V~~P~d~~----e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
++ ...+++.+-...... .+++ .+..+++.|... .+|++|-+|+.
T Consensus 136 q~~d~q~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 136 RTLDTQFQVFKEITVAQARL-DDPAKAPAEIARVLGAARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp ---CHHHHHHTTSCSCEEEC-CCTTTHHHHHHHHHHHHHHH-TCCEEEEEEGG
T ss_pred cchhhHHHHHHhhheEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEECChh
Confidence 44 578898886654433 3333 345556556543 69999999853
No 71
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.63 E-value=1.6 Score=49.51 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=80.4
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCC-CCCCCCCh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGE-DGPTHQPI 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~-dG~THq~~ 534 (721)
=|++.+ .-|++++-+|-|+|...+ +|.+ .|..+=...++..|..+-+.+.||+++....... .|. .| .+|.+
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg--~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~ 123 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEG--KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-DYEEM 123 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-ccccc
Confidence 466665 899999999999998733 5544 4677777777888888888999999886433332 221 22 46777
Q ss_pred hhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 004970 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 579 (721)
Q Consensus 535 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~Irl~r~ 579 (721)
+...+++.+-...... .+++++...++.|++ ...+|++|-+|..
T Consensus 124 dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 124 DQMNVARPHCKASFRI-NSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CHHHHSGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred CHHHHHHhhhheeeec-CCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 8888999887764444 455555555554443 2579999998865
No 72
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=86.41 E-value=3.5 Score=46.68 Aligned_cols=117 Identities=16% Similarity=0.070 Sum_probs=77.6
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh---
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~--- 534 (721)
=|++-+ ..|++++.+|-|+|...+ .-.++.|..+=...++..|..+.+.+.||+++....... .+.+...||.+
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 42 MEQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred ceEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 366665 899999999999997642 222334677766677788888778899999887544443 23333345532
Q ss_pred ---hhhHHHhcCCCcEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 004970 535 ---EHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 535 ---edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~Irl~r~ 579 (721)
....+++.+-.... ...+++++. .+++.|... .+|++|-+|..
T Consensus 120 ~~~d~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 169 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAAE-AIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACN 169 (568)
T ss_dssp CCCHHHHHHTTSCSCEE-EECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGG
T ss_pred chHHHHHHHHhhEeEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechh
Confidence 45788988876643 334555444 445555544 49999999865
No 73
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=86.25 E-value=2.6 Score=48.19 Aligned_cols=115 Identities=8% Similarity=-0.050 Sum_probs=77.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE--EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCChh
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 535 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv--~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~e 535 (721)
=|++-+ .-|++++-+|-|+|...+ +|.+ .|+.+=...++..|.++-+.+.||+++....... .|. ..+|.+.
T Consensus 51 i~~i~~-~hE~~Aa~aA~GyAr~tg--~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d 125 (603)
T 4feg_A 51 IHYIQV-RHEEVGAMAAAADAKLTG--KIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMN 125 (603)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCC
T ss_pred CeEEEe-cChHHHHHHHHHHHHHhC--CceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccCC--Ccccccc
Confidence 366655 899999999999996543 5555 4677777777788888888999999886433332 232 2457677
Q ss_pred hhHHHhcCCCcEEEe--eCC-HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 536 HLASFRAMPNILMLR--PAD-GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 536 dia~lr~iPnl~V~~--P~d-~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
...+++.+-...... |.+ +..+..+++.|.. ..+|++|-+|..
T Consensus 126 ~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 126 ENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp CGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 778888876654433 333 2334445566665 479999999864
No 74
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=86.11 E-value=3.5 Score=46.59 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=76.7
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh--
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI-- 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~-- 534 (721)
=|++.+ ..|++++.+|.|+|...+ ..+| .|..+=...++..|-++.+.+.||+++....... .+.+-..||.+
T Consensus 42 i~~v~~-~~E~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~ 118 (566)
T 2vbi_A 42 MKQIYC-CNELNCGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGK 118 (566)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSS
T ss_pred CeEEee-CcHHHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccC
Confidence 356654 899999999999998652 3344 4666666677777877778899999887544443 23332345432
Q ss_pred ----hhhHHHhcCCCcEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCCC
Q 004970 535 ----EHLASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQK 580 (721)
Q Consensus 535 ----edia~lr~iPnl~V~~P~d~~e----~~~~l~~a~~~~~~P~~Irl~r~~ 580 (721)
....+++.+--..+ .+.++++ +..+++.|... .+|++|-+|..-
T Consensus 119 ~~~~d~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 119 TDYSYQLEMARQVTCAAE-SITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp SCCTHHHHHHHTTCSEEE-EECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred cchHHHHHHHhhhEeEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 45788988865433 3334443 44455555544 499999998753
No 75
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=85.33 E-value=4.3 Score=45.81 Aligned_cols=116 Identities=18% Similarity=0.096 Sum_probs=77.9
Q ss_pred CccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh--
Q 004970 459 ERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI-- 534 (721)
Q Consensus 459 ~R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~-- 534 (721)
=|++-+ .-|++++-+|-|+|...+ .++| .|..+=...++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 43 i~~v~~-~~E~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~ 119 (563)
T 2vk8_A 43 MRWAGN-ANELNAAYAADGYARIKG--MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGN 119 (563)
T ss_dssp CEECCC-SSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSS
T ss_pred ceEEcc-CchHHHHHHHHHHHHhhC--CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCC
Confidence 366664 999999999999998653 4444 4677777777778887778899999886443332 12233334322
Q ss_pred ----hhhHHHhcCCCcEEEeeCC----HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 535 ----EHLASFRAMPNILMLRPAD----GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 535 ----edia~lr~iPnl~V~~P~d----~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
+...+++.+-...... .+ +..+..+++.|... .+|++|-+|..
T Consensus 120 ~~~q~~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d 170 (563)
T 2vk8_A 120 GDFTVFHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVT-QRPVYLGLPAN 170 (563)
T ss_dssp SCSSHHHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHH-TSCEEEEEETT
T ss_pred cchHHHHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEEechh
Confidence 3467888877654433 44 34556666666654 59999999875
No 76
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=85.03 E-value=2.9 Score=43.88 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHHH-HHh--------cCCCeEEEEEECCCcc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASSL-AGH--------LGLGKLIAFYDDNHIS 246 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~~-a~~--------~~L~~li~IvddN~~~ 246 (721)
.++.|.|+|++. -+.++++ .++.. + ..++.+.. ++. .++ |++++++ .++.
T Consensus 63 ~v~~a~G~A~~G---------------~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~-~g~~ 122 (324)
T 1umd_B 63 IVGAALGMAAHG---------------LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTA-PLVVRMP-SGGG 122 (324)
T ss_dssp HHHHHHHHHHHT---------------CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCC-CCEEEEE-ECSS
T ss_pred HHHHHHHHHHCC---------------CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcC-CEEEEEc-CCCC
Confidence 356677777652 2345544 77775 4 67777754 332 577 5666666 3444
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
..+...... ++. .+++.. ||.++.+ . |..+....++.+.+ .++|++|.
T Consensus 123 ~~~g~~hs~-~~~-a~~~~iP~~~V~~P---~-d~~e~~~~l~~a~~-~~~Pv~i~ 171 (324)
T 1umd_B 123 VRGGHHHSQ-SPE-AHFVHTAGLKVVAV---S-TPYDAKGLLKAAIR-DEDPVVFL 171 (324)
T ss_dssp SSCGGGSSC-CCH-HHHHTSTTCEEEEC---C-SHHHHHHHHHHHHH-CSSCEEEE
T ss_pred CCCCCccch-hHH-HHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-cCCCEEEE
Confidence 333332222 444 677775 9999999 4 89999999999987 78899874
No 77
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=82.80 E-value=4.6 Score=46.34 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=70.9
Q ss_pred Cccccch-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc--
Q 004970 170 TTGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS-- 246 (721)
Q Consensus 170 ~~G~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~-- 246 (721)
.+|.-=+ .++.|.|+|++-. -..+++..+++.. ..++.+..++..++ |++++++..+++
T Consensus 359 d~gIaE~~~v~~a~G~A~~G~--------------~~~~~~~f~~Fl~---~a~dqi~~~a~~~~-~v~~v~~~~g~~~G 420 (616)
T 3mos_A 359 ECYIAEQNMVSIAVGCATRNR--------------TVPFCSTFAAFFT---RAFDQIRMAAISES-NINLCGSHCGVSIG 420 (616)
T ss_dssp ECCSCHHHHHHHHHHHHGGGC--------------CEEEEEEEGGGGG---GGHHHHHHHHHTTC-CEEEEEESBSGGGC
T ss_pred EcCccHHHHHHHHHHHHHcCC--------------CCEEEEehHHHHH---HHHHHHHHHHHhCC-CeEEEEECCCcccc
Confidence 3443333 3566777776431 2345668888864 78899988888888 677777776653
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLI 300 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI 300 (721)
.++++.. ..+++ ..++.. |+.++.+ . |..++..+++.+.+ .++|++|
T Consensus 421 ~dG~tH~-~~ed~-a~l~~iP~l~V~~P---~-d~~e~~~~l~~a~~-~~gp~~i 468 (616)
T 3mos_A 421 EDGPSQM-ALEDL-AMFRSVPTSTVFYP---S-DGVATEKAVELAAN-TKGICFI 468 (616)
T ss_dssp TTCGGGC-BSSHH-HHHHTSTTEEEECC---C-SHHHHHHHHHHHHT-CCSEEEE
T ss_pred CCCCccc-CHHHH-HHhcCCCCCEEEec---C-CHHHHHHHHHHHHh-cCCCEEE
Confidence 3444431 22333 456655 8998888 4 89999999998887 6789866
No 78
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=82.39 E-value=2.5 Score=44.68 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHHH-HHh--------cCCCeEEEEEECCCcc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASSL-AGH--------LGLGKLIAFYDDNHIS 246 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~~-a~~--------~~L~~li~IvddN~~~ 246 (721)
.++.|.|+|++. -+.++++ .+++. + ..++.+.. ++. +++ |+++++...+ +
T Consensus 64 ~~~~a~G~A~~G---------------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~~g-~ 123 (338)
T 1qs0_B 64 IVGTAVGMGAYG---------------LRPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIA-PLTLRMPCGG-G 123 (338)
T ss_dssp HHHHHHHHHHHT---------------CEEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCC-CCEEEEEECC-S
T ss_pred HHHHHHHHHhCC---------------CEEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCC-CEEEEEeCCC-C
Confidence 456777887753 2344444 88886 4 77787653 432 247 5666665443 4
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
.++++.... .| ...+++. ||.++.+ . |..+....++.|.+ .++|++|-..
T Consensus 124 ~~G~th~s~-~d-~~~l~~iP~l~V~~P---s-d~~e~~~~l~~A~~-~~~Pv~i~~p 174 (338)
T 1qs0_B 124 IYGGQTHSQ-SP-EAMFTQVCGLRTVMP---S-NPYDAKGLLIASIE-CDDPVIFLEP 174 (338)
T ss_dssp SSCCSSSSC-CC-HHHHTTSTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred CCCcccccc-cH-HHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-cCCcEEEEEc
Confidence 455443222 23 3567776 9999999 4 99999999999987 6899988654
No 79
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=81.34 E-value=3.2 Score=46.95 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=75.3
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEEEEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh----
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI---- 534 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~---- 534 (721)
|++-+ ..|++++.+|.|+|...+ .-.++.|..+-...++..|..+.+.+.||+++....... .+.+...||.+
T Consensus 65 ~~i~~-~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~ 142 (570)
T 2vbf_A 65 KWIGN-ANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGD 142 (570)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred eEECc-CcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccc
Confidence 55554 899999999999996532 123335788877778888887778899999886443332 23333455522
Q ss_pred --hhhHHHhcCCCcEEEeeCCHHHHHHHH----HHHHHcCCCcEEEEEcCC
Q 004970 535 --EHLASFRAMPNILMLRPADGNETAGAY----KVAVANRKRPSILALSRQ 579 (721)
Q Consensus 535 --edia~lr~iPnl~V~~P~d~~e~~~~l----~~a~~~~~~P~~Irl~r~ 579 (721)
+...+++.+.-.....+. +++...+ +.|... .+|++|-+|..
T Consensus 143 ~~~~~~~~~~~tk~~~~v~~--~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 190 (570)
T 2vbf_A 143 FKHFMKMHEPVTAARTLLTA--ENATYEIDRVLSQLLKE-RKPVYINLPVD 190 (570)
T ss_dssp CCHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_pred hHHHHHHhhhhEEEEEEECc--ccHHHHHHHHHHHHhhC-CCCEEEEcchh
Confidence 246788888765555543 4554444 445533 59999998763
No 80
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=81.02 E-value=5.2 Score=44.97 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=75.4
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCCccEE-EEchhHHHhHHHHHHHhhhcCCcEEEEEecCCcc-cCCCCCCCCCh---
Q 004970 460 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 534 (721)
Q Consensus 460 R~~~~GIaE~~~vg~aaGlA~~G~~~~Piv-~~~~~F~~r~~dqir~~a~~~~pV~~v~t~~g~~-~g~dG~THq~~--- 534 (721)
|++- ...|++++-+|.|+|...+ .++| .|..+=...++..|..+.+.+.||+++....... .+.+-..||.+
T Consensus 45 ~~i~-~~~E~~A~~~A~Gyar~tg--~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 45 CWVG-CANELNASYAADGYARCKG--FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHHhhC--CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCC
Confidence 4554 4899999999999998763 4554 4677766666777777778899999887543332 22222333322
Q ss_pred ---hhhHHHhcCCCcEEEeeCC--HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 004970 535 ---EHLASFRAMPNILMLRPAD--GNETAGAYKVAVANRKRPSILALSRQ 579 (721)
Q Consensus 535 ---edia~lr~iPnl~V~~P~d--~~e~~~~l~~a~~~~~~P~~Irl~r~ 579 (721)
+...+++.+--.....+.+ +..+..+++.|... .+|++|-+|..
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred cHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 3456788777665555541 34445555555543 49999998764
No 81
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=80.69 E-value=5.3 Score=42.22 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHHHHHh---------cCCCeEEEEEECCCc-
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASSLAGH---------LGLGKLIAFYDDNHI- 245 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~~a~~---------~~L~~li~IvddN~~- 245 (721)
.++.|.|+|++. -+.++++ .+|.. + ..++.+..... .++ |+++++.. ++
T Consensus 74 ~v~~a~G~A~~G---------------~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~-pvv~~~~~-G~~ 133 (341)
T 2ozl_B 74 FAGIAVGAAMAG---------------LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPV-PIVFRGPN-GAS 133 (341)
T ss_dssp HHHHHHHHHHTT---------------CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCC-CCEEEEEC-SCC
T ss_pred HHHHHHHHHHCC---------------CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCC-CEEEEEcC-cCC
Confidence 456777887642 2345543 77776 3 77787765442 677 67777775 43
Q ss_pred cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 246 SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
+-++++. ...+...+++. ||.++.+ . |..+....++.|.+ .++|++|-.
T Consensus 134 g~~G~tH---s~~~ea~l~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~~ 183 (341)
T 2ozl_B 134 AGVAAQH---SQCFAAWYGHCPGLKVVSP---W-NSEDAKGLIKSAIR-DNNPVVVLE 183 (341)
T ss_dssp SSCCGGG---CCCCHHHHHTSTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEE
T ss_pred CCCCcch---hhHHHHHhccCCCCEEEEe---C-CHHHHHHHHHHHHh-cCCCEEEEE
Confidence 2233333 22223567765 9999998 4 99999999999987 689987744
No 82
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=80.41 E-value=5 Score=41.99 Aligned_cols=99 Identities=11% Similarity=-0.053 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHHH-HHh--------cCCCeEEEEEECCCc
Q 004970 176 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASSL-AGH--------LGLGKLIAFYDDNHI 245 (721)
Q Consensus 176 ~gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~~-a~~--------~~L~~li~IvddN~~ 245 (721)
..++.|.|+|++. -+.++++ .+++. + ..++.+.. ++. .++ |++++++ .+.
T Consensus 61 ~~v~~a~G~A~~G---------------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~-~g~ 120 (324)
T 1w85_B 61 GIGGLAIGLALQG---------------FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHM-PITIRSP-FGG 120 (324)
T ss_dssp HHHHHHHHHHHTT---------------CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCC-CCEEEEE-ECS
T ss_pred HHHHHHHHHHhCC---------------CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcC-CEEEEEe-ccC
Confidence 3456777777642 2334444 77775 4 67777753 333 677 5666666 444
Q ss_pred cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 246 SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
...+..... .++. .++++. ||.++.+ . |..+....++.|.+ .++|++|-
T Consensus 121 ~~~~g~~hs-~~~~-a~~~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~ 170 (324)
T 1w85_B 121 GVHTPELHS-DSLE-GLVAQQPGLKVVIP---S-TPYDAKGLLISAIR-DNDPVIFL 170 (324)
T ss_dssp SSCCCTTSS-CCCH-HHHTTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEE
T ss_pred CCCCCCccc-ccHH-HHHccCCCCEEEee---C-CHHHHHHHHHHHHH-cCCCEEEE
Confidence 433332222 2444 677775 9999988 4 89999999999987 78899885
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=79.68 E-value=8.5 Score=44.50 Aligned_cols=108 Identities=18% Similarity=0.074 Sum_probs=70.1
Q ss_pred ccccch-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--cc
Q 004970 171 TGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SI 247 (721)
Q Consensus 171 ~G~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i 247 (721)
+|.-=+ .++.|.|+|+.. + -+.++++..+-.. ..++++..++..++ |++++....+. +.
T Consensus 408 ~GIaE~~~v~~a~GlA~~g---G-----------~~P~~~tf~~F~~---~~~~~ir~~a~~~l-pvv~~~t~~g~g~G~ 469 (663)
T 3kom_A 408 YGVREFGMAAIMNGLSLYG---G-----------IKPYGGTFLVFSD---YSRNAIRMSALMKQ-PVVHVMSHDSIGLGE 469 (663)
T ss_dssp CCSCHHHHHHHHHHHHHHS---S-----------CEEEEEEEGGGHH---HHHHHHHHHHHTTC-CCEEEEECCSGGGCT
T ss_pred cCccHHHHHHHHHHHHHcC---C-----------CEEEEEehHHHHH---HHHHHHHHHHhcCC-CEEEEEeCCccccCC
Confidence 344333 356678888641 1 2456666555432 45788888889998 67777655544 44
Q ss_pred cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 248 DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 248 ~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
++++. ...+++ ..+++. |+.++.+ . |..++..+++.|.+..++|++|..
T Consensus 470 dG~TH-q~~ed~-a~lr~iPnl~V~~P---a-d~~e~~~~l~~A~~~~~~Pv~ir~ 519 (663)
T 3kom_A 470 DGPTH-QPIEHV-PSLRLIPNLSVWRP---A-DTIETMIAWKEAVKSKDTPSVMVL 519 (663)
T ss_dssp TCTTT-CCSSHH-HHHHTSTTCEEECC---C-SHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred CCCCc-CCHHHH-HHHhcCCCcEEEee---C-CHHHHHHHHHHHHHhCCCCEEEEc
Confidence 55554 222343 456654 8999998 4 899999999998874588998843
No 84
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=79.62 E-value=7.8 Score=44.52 Aligned_cols=107 Identities=15% Similarity=0.017 Sum_probs=70.3
Q ss_pred ccccch-hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--cc
Q 004970 171 TGPLGQ-GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SI 247 (721)
Q Consensus 171 ~G~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i 247 (721)
+|.-=+ .++.|.|+|+.. + -+.++.+..+- . ...++.+..++..++ |++++....++ +.
T Consensus 387 ~GIaE~~~v~~a~GlA~~g---G-----------~~P~~~~f~~F--~-~~~~~~ir~~a~~~~-pv~~~~t~~g~g~G~ 448 (632)
T 3l84_A 387 FGIREHAMAAINNAFARYG---I-----------FLPFSATFFIF--S-EYLKPAARIAALMKI-KHFFIFTHDSIGVGE 448 (632)
T ss_dssp CCSCHHHHHHHHHHHHHHS---S-----------CEEEEEEEGGG--H-HHHHHHHHHHHHHTC-CCEEEEECCSGGGCT
T ss_pred eCccHHHHHHHHHHHHHcC---C-----------CEEEEEecHHH--H-HHHHHHHHHHhccCC-CEEEEEECCCcCCCC
Confidence 344333 346777887641 1 23566655443 2 256788888888998 67777755555 44
Q ss_pred cccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 248 DGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 248 ~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
++++. ...++ ...+++. |+.++.+ . |..+...+++.|.+ .++|++|..
T Consensus 449 dG~TH-q~~ed-~a~lr~iP~l~V~~P---~-d~~e~~~~l~~A~~-~~~Pv~ir~ 497 (632)
T 3l84_A 449 DGPTH-QPIEQ-LSTFRAMPNFLTFRP---A-DGVENVKAWQIALN-ADIPSAFVL 497 (632)
T ss_dssp TCGGG-SCSSH-HHHHHHSSSCEEECC---S-SHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred CCCCC-CCHhH-HHHHhcCCCCEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 55554 22234 3456665 9999999 4 89999999999988 789998854
No 85
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=75.58 E-value=9.4 Score=40.79 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHHH-HHhc--------CCCeEEEEEECCCcc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASSL-AGHL--------GLGKLIAFYDDNHIS 246 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~~-a~~~--------~L~~li~IvddN~~~ 246 (721)
.++.|.|+|++. -+.++++ .+|.. + ..++.+.. ++.. ++ |+++++...+..
T Consensus 110 ~v~~a~G~A~~G---------------~rpv~~~tf~~Fl-~--~a~Dqi~~~~a~~~~~~~g~~~~-pvv~~~~~gg~~ 170 (369)
T 1ik6_A 110 ILGFAMGMAMAG---------------LKPVAEIQFVDFI-W--LGADELLNHIAKLRYRSGGNYKA-PLVVRTPVGSGT 170 (369)
T ss_dssp HHHHHHHHHHTT---------------CEEEEECCCC-------CCHHHHHHHHHHHHC------CC-CCEEEEEECC--
T ss_pred HHHHHHHHHHCC---------------CeeEEEecchhHH-H--HHHHHHHHHHHHHHHhhCCCCCC-CEEEEEeCCCCC
Confidence 456777877642 2345544 88876 3 66777654 4433 88 566666655432
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
-++.+ .......++++. ||.++.+ . |..+...+++.|.+ .++|++|..
T Consensus 171 g~g~~---hs~~~~a~l~~iPnl~V~~P---s-d~~e~~~ll~~A~~-~~~Pv~i~~ 219 (369)
T 1ik6_A 171 RGGLY---HSNSPEAIFVHTPGLVVVMP---S-TPYNAKGLLKAAIR-GDDPVVFLE 219 (369)
T ss_dssp ------------HHHHHHTCTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEE
T ss_pred CCCcc---ccccHHHHHcCCCCcEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 23322 222234667775 9999998 4 99999999999987 789998853
No 86
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=75.27 E-value=11 Score=43.49 Aligned_cols=101 Identities=19% Similarity=0.111 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccc--cccccccc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI--DGDTEIAF 255 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i--~~~~~~~~ 255 (721)
++.|.|+|+.-. -+.+++...=.. . ..++++..++..++ |+++++...+.+. ++++. ..
T Consensus 410 ~~~a~GlA~~Gg--------------~~P~~~t~~~F~--~-~~~~air~~a~~~l-pvv~~~t~~g~g~G~dG~tH-q~ 470 (651)
T 2e6k_A 410 GAILNGLNLHGG--------------YRAYGGTFLVFS--D-YMRPAIRLAALMGV-PTVFVFTHDSIALGEDGPTH-QP 470 (651)
T ss_dssp HHHHHHHHHHSS--------------CEEEEEEEGGGG--G-GSHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-CC
T ss_pred HHHHHHHHHcCC--------------CEEEEEeHHHHH--H-HHHHHHHHHHhcCC-CEEEEEECCccccCCCcCcc-cc
Confidence 457778776420 134555442222 1 45677888999999 5667765566543 45554 33
Q ss_pred cccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 256 TENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 256 ~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
.+|+. .+++. ||.++.+ . |..++..+++.|.+..++|++|..
T Consensus 471 ~edla-~lr~iP~l~V~~P---a-d~~E~~~~l~~A~~~~~~Pv~i~~ 513 (651)
T 2e6k_A 471 VEHLM-SLRAMPNLFVIRP---A-DAYETFYAWLVALRRKEGPTALVL 513 (651)
T ss_dssp SSHHH-HHHTSTTCEEECC---S-SHHHHHHHHHHHHHCCSSCEEEEC
T ss_pred HHHHH-HhcCCCCcEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEE
Confidence 34544 46665 9999999 4 899999999999873378998865
No 87
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=74.73 E-value=12 Score=43.41 Aligned_cols=101 Identities=19% Similarity=0.093 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc--ccccccccc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAF 255 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~--i~~~~~~~~ 255 (721)
++.|.|+|+.. + -+.+++....... ..++++..++..++ |+++++-..+++ -++++. ..
T Consensus 415 v~~a~GlA~~g---G-----------~~P~~~tf~~F~~---~~~~~ir~~a~~~l-pvv~~~t~~g~~~G~dG~tH-q~ 475 (669)
T 2r8o_A 415 TAIANGISLHG---G-----------FLPYTSTFLMFVE---YARNAVRMAALMKQ-RQVMVYTHDSIGLGEDGPTH-QP 475 (669)
T ss_dssp HHHHHHHHHHS---S-----------CEEEEEEEGGGGG---TTHHHHHHHHHTTC-CCEEEEECCSGGGCTTCTTT-CC
T ss_pred HHHHHHHHHcC---C-----------CeEEEeehHHHHH---HHHHHHHHHHhcCC-CEEEEEeCCCcCcCCCCCcc-CC
Confidence 46677777641 1 2345555444332 56788888999999 666777655554 345554 23
Q ss_pred cccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 256 TENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 256 ~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
.+++. .+++. |+.++.+ . |..++..+++.|.+..++|++|..
T Consensus 476 ~edla-~lr~iP~l~V~~P---a-d~~E~~~~l~~a~~~~~~Pv~i~~ 518 (669)
T 2r8o_A 476 VEQVA-SLRVTPNMSTWRP---C-DQVESAVAWKYGVERQDGPTALIL 518 (669)
T ss_dssp SSHHH-HHHTSTTCEEECC---S-SHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred HHHHH-HhcCCCCCEEEec---C-CHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34444 45554 9999998 4 899999999999873388998843
No 88
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=74.44 E-value=14 Score=42.88 Aligned_cols=72 Identities=25% Similarity=0.264 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCeEEEEEECCCc--cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEE
Q 004970 223 EASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299 (721)
Q Consensus 223 Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~l 299 (721)
.++..++..++ |+++++...++ +.++++. ...+++ ..+++. |+.++.+ . |..+...+++.|.+..++|++
T Consensus 468 ~air~~al~~l-pVv~v~~~~gigvG~dG~TH-q~ied~-a~lr~iPnl~V~~P---a-d~~E~~~~l~~Ai~~~~~Pv~ 540 (690)
T 3m49_A 468 PAIRLAALMQL-PVTYVFTHDSIAVGEDGPTH-EPIEQL-AALRAMPNVSVIRP---A-DGNESVAAWRLALESTNKPTA 540 (690)
T ss_dssp HHHHHHHHHTC-CCEEEEECCSGGGCTTCGGG-CCSSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHHCSSSCEE
T ss_pred HHHHHHHhcCC-CcEEEEECCCcCCCCCCCcc-CCHHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHHcCCCCEE
Confidence 45677888898 67788877665 4455554 122343 566665 9999999 4 899999999999873378998
Q ss_pred EE
Q 004970 300 IR 301 (721)
Q Consensus 300 I~ 301 (721)
|.
T Consensus 541 ir 542 (690)
T 3m49_A 541 LV 542 (690)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 89
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=74.09 E-value=7.5 Score=45.05 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=59.3
Q ss_pred cEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc--ccccccccccccHHHHHhh-CCCeEEEeccCCCCHH
Q 004970 205 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAFTENVDKRFEG-LGWHVIWVKNGNTGYD 281 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~--i~~~~~~~~~~~~~~~~~a-~G~~~~~v~dG~~d~~ 281 (721)
+.++.+..+... ..++++..++..++ |++++.-..+.+ .++++. ...+++. ++++ -|+.++.+ . |..
T Consensus 441 ~P~~~t~~~F~~---~~~~~ir~~a~~~l-pvv~~~t~~g~g~G~dG~tH-q~~edla-~lr~iP~l~V~~P---a-d~~ 510 (675)
T 1itz_A 441 VPYCATFFVFTD---YMRGAMRISALSEA-GVIYVMTHDSIGLGEDGPTH-QPIEHLV-SFRAMPNILMLRP---A-DGN 510 (675)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-CCSSHHH-HHHSSSSCEEECC---C-SHH
T ss_pred EEEEEEHHHHHH---HHHHHHHHHHhcCC-CEEEEEECCccccCCCCCCc-CcHHHHH-HhccCCCeEEEEC---C-CHH
Confidence 345555544332 67888999999999 566666444444 355554 2334444 4555 49999988 4 899
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 004970 282 DIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 282 ~l~~al~~a~~~~~~P~lI~~ 302 (721)
++..+++.|.+..++|++|..
T Consensus 511 e~~~~l~~a~~~~~~Pv~i~~ 531 (675)
T 1itz_A 511 ETAGAYKVAVLNRKRPSILAL 531 (675)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEe
Confidence 999999999873388998854
No 90
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=73.69 E-value=7.9 Score=44.89 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEEECCCcc--ccccccccccccHHHHHhh-CCCeEEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004970 220 IANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAFTENVDKRFEG-LGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296 (721)
Q Consensus 220 ~~~Eal~~a~~~~L~~li~IvddN~~~--i~~~~~~~~~~~~~~~~~a-~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 296 (721)
..++++.+++..++ |+++++-..+.+ -++++. ...+++. .+++ -|+.++.+ . |..++..+++.|.+..++
T Consensus 448 ~~~~air~~a~~~l-pvv~v~t~~g~g~G~dG~tH-q~~edla-~lr~iP~l~V~~P---a-d~~e~~~~l~~A~~~~~~ 520 (680)
T 1gpu_A 448 YAAGAVRLSALSGH-PVIWVATHDSIGVGEDGPTH-QPIETLA-HFRSLPNIQVWRP---A-DGNEVSAAYKNSLESKHT 520 (680)
T ss_dssp GGHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-CCSSHHH-HHHTSSSCEEECC---C-SHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCccccCCCCCcc-CCHHHHH-HhcCCCCCEEEec---C-CHHHHHHHHHHHHHhCCC
Confidence 45777888899999 677777555554 345554 2334444 5565 49999998 4 899999999999873388
Q ss_pred CEEEEE
Q 004970 297 PTLIRV 302 (721)
Q Consensus 297 P~lI~~ 302 (721)
|++|..
T Consensus 521 Pv~i~~ 526 (680)
T 1gpu_A 521 PSIIAL 526 (680)
T ss_dssp CEEEEC
T ss_pred cEEEEe
Confidence 998853
No 91
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=73.68 E-value=13 Score=39.72 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=54.4
Q ss_pred chhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--C---ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Q 004970 492 FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q---PIEHLASFRAMPNILMLRPADGNETAGAYKVAV 565 (721)
Q Consensus 492 ~~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q---~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~ 565 (721)
-..|.+ -.++.+..++..++||++++-..+++. .++++ . .+.+++---.+|++.| -=.|..++..+++.|+
T Consensus 173 DGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi--~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~ 249 (368)
T 1w85_A 173 DGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI--STPVEKQTVAKTLAQKAVAAGIPGIQV-DGMDPLAVYAAVKAAR 249 (368)
T ss_dssp TGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET--TEEGGGTCSCSCSGGGGGGTTCCEEEE-ETTCHHHHHHHHHHHH
T ss_pred hhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc--eeccccccCCCCHHHHHHHCCCCEEEE-cCCCHHHHHHHHHHHH
Confidence 566654 245667778889999999998887653 22222 1 2333333346777655 3447899999999888
Q ss_pred H---cCCCcEEEEE
Q 004970 566 A---NRKRPSILAL 576 (721)
Q Consensus 566 ~---~~~~P~~Irl 576 (721)
+ ..++|++|-+
T Consensus 250 ~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 250 ERAINGEGPTLIET 263 (368)
T ss_dssp HHHHTTSCCEEEEE
T ss_pred HHHHhcCCCEEEEE
Confidence 5 2578999865
No 92
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=71.00 E-value=16 Score=41.72 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHH-HHHHHhcCCCeEEEEEECCCcc-cccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEA-SSLAGHLGLGKLIAFYDDNHIS-IDGDTEIA 254 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Ea-l~~a~~~~L~~li~IvddN~~~-i~~~~~~~ 254 (721)
.++.|.|+|++. -+.++++.++.. + ..++- ++.++..++ |+++++...++. -++++..
T Consensus 373 ~~~~a~G~A~~G---------------~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~-pvv~~~~~~g~~g~~G~tH~- 432 (621)
T 2o1s_A 373 AVTFAAGLAIGG---------------YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKL-PVLFAIDRAGIVGADGQTHQ- 432 (621)
T ss_dssp HHHHHHHHHHTT---------------CEEEEEEETTGG-G--GGHHHHHHTTTTTTC-CCEEEEESCBCCCTTCGGGC-
T ss_pred HHHHHHHHHHCC---------------CEEEEEehHhHH-H--HHHHHHHHHHHhcCC-CEEEEEECCccCCCCCCccC-
Confidence 355777777642 356777888864 3 56654 566788888 677777776652 2333322
Q ss_pred ccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Q 004970 255 FTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 255 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~ 302 (721)
..+|+ ..+++. ||.++.+ . |..+....++.|.+..++|++|..
T Consensus 433 ~~~d~-~~~~~iP~l~v~~P---~-d~~e~~~~l~~a~~~~~~Pv~i~~ 476 (621)
T 2o1s_A 433 GAFDL-SYLRCIPEMVIMTP---S-DENECRQMLYTGYHYNDGPSAVRY 476 (621)
T ss_dssp BCSHH-HHTTTSTTCEEECC---S-SHHHHHHHHHHHHHCCSSCEEEEC
T ss_pred chHHH-HHHhcCCCCEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEe
Confidence 22333 456666 9999999 4 899999999999873388988744
No 93
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=70.28 E-value=15 Score=42.61 Aligned_cols=88 Identities=19% Similarity=0.066 Sum_probs=59.0
Q ss_pred cEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCcc--ccccccccccccHHHHHhh-CCCeEEEeccCCCCHH
Q 004970 205 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS--IDGDTEIAFTENVDKRFEG-LGWHVIWVKNGNTGYD 281 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~--i~~~~~~~~~~~~~~~~~a-~G~~~~~v~dG~~d~~ 281 (721)
+.++.+...-. . ..++++..++..++ |+++++...+++ -++++. ...+++. .+++ -|+.++.+ . |..
T Consensus 428 ~P~~~~~~~F~--~-~~~~~ir~~a~~~~-pvv~~~t~~g~g~G~dG~tH-q~~edla-~lr~iP~l~V~~P---a-d~~ 497 (673)
T 1r9j_A 428 IPFGGTFLNFI--G-YALGAVRLAAISHH-RVIYVATHDSIGVGEDGPTH-QPVELVA-ALRAMPNLQVIRP---S-DQT 497 (673)
T ss_dssp EEEEEEEGGGG--G-GGHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-CCSSHHH-HHHHSTTCEEECC---S-SHH
T ss_pred EEEEEehHHHH--H-HHHHHHHHHHhcCC-CEEEEEECCccCcCCCCccc-CCHHHHH-HHcCCCCCEEEeC---C-CHH
Confidence 34555543332 2 56778888999999 577777555544 345554 2334443 5555 49999998 4 899
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 004970 282 DIRAAIKEAKAVTDKPTLIRV 302 (721)
Q Consensus 282 ~l~~al~~a~~~~~~P~lI~~ 302 (721)
++..+++.|.+..++|++|..
T Consensus 498 e~~~~l~~a~~~~~~Pv~i~~ 518 (673)
T 1r9j_A 498 ETSGAWAVALSSIHTPTVLCL 518 (673)
T ss_dssp HHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEEEE
Confidence 999999999873388998854
No 94
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=69.11 E-value=22 Score=41.40 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCc--cccccccccc
Q 004970 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAF 255 (721)
Q Consensus 178 l~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~ 255 (721)
++.|.|+|+.. + -+.++++.. .|.. ..+..+..++..++ |+++++...++ +.++++. ..
T Consensus 461 v~~AaGlA~~~---G-----------~~Pv~~~f~--~F~~-~~~~~ir~~a~~~l-pv~~v~thdg~gvG~dG~TH-q~ 521 (711)
T 3uk1_A 461 SAAINGLVLHG---G-----------YKPFGGTFL--TFSD-YSRNALRVAALMKV-PSIFVFTHDSIGLGEDGPTH-QS 521 (711)
T ss_dssp HHHHHHHHHHS---S-----------CEEEEEEEG--GGHH-HHHHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-CC
T ss_pred HHHHHHHHHcC---C-----------CEEEEEEhH--HHHH-HHHHHHHHhhhcCC-CEEEEEECCCcCcCCCCCcc-CC
Confidence 56777888631 1 234555543 3331 45677888888898 56677655444 4556554 22
Q ss_pred cccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEE
Q 004970 256 TENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301 (721)
Q Consensus 256 ~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~ 301 (721)
.+++ ..+++. |+.++.+ . |..++..+++.|.+ .++|++|.
T Consensus 522 ~ed~-a~lr~iPnl~V~~P---a-d~~E~~~~l~~Ai~-~~~Pv~ir 562 (711)
T 3uk1_A 522 VEHV-ASLRLIPNLDVWRP---A-DTVETAVAWTYAVA-HQHPSCLI 562 (711)
T ss_dssp SSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEE
T ss_pred hhHH-HHHhcCCCCEEEec---C-CHHHHHHHHHHHHh-cCCCEEEE
Confidence 3343 456665 9999999 4 89999999999988 78999884
No 95
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=66.12 E-value=29 Score=36.81 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred cCCchHHHHHHHHHHHHh----cCCCCccEEE-EchhHHHh-HHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--C--
Q 004970 463 RFGVREHGMGAICNGIAL----HSPGLIPYCA-TFFVFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q-- 532 (721)
Q Consensus 463 ~~GIaE~~~vg~aaGlA~----~G~~~~Piv~-~~~~F~~r-~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q-- 532 (721)
..|.-++ .+++|.|+|+ .+..-++|+. --..|..- .++.+..++..++|+++++...+++. .+++. .
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi--~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI--SVDYRHQTHS 218 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEET--TEEHHHHCSS
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeee--ccChhhccCC
Confidence 4454443 2344445443 3321233443 25666443 45667778889999999998888643 33321 1
Q ss_pred -ChhhhHHHhcCCCcEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 004970 533 -PIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 533 -~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~Irl 576 (721)
.+.+++---.+|.+.| .-.|..++..+++.+++ ..++|++|-+
T Consensus 219 ~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2233333335666654 45677777666666664 3578998865
No 96
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=65.35 E-value=19 Score=38.85 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccEEE-EchhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--CChhhhHHHhcCCCcEEEe--eCCHHHHHH
Q 004970 486 IPYCA-TFFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASFRAMPNILMLR--PADGNETAG 559 (721)
Q Consensus 486 ~Piv~-~~~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q~~edia~lr~iPnl~V~~--P~d~~e~~~ 559 (721)
++|+. --..|.+ -.++.+..++..++||++++-..+++. .+++. .+..|++-...--|+.++. =.|..++..
T Consensus 186 ~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i--~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~ 263 (400)
T 2bfd_A 186 VVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAI--STPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYN 263 (400)
T ss_dssp CEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET--TEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHH
T ss_pred eEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceee--eecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 44443 3566643 235667777888999999998776653 33333 2223443222222444432 346788888
Q ss_pred HHHHHHH---cCCCcEEEEE
Q 004970 560 AYKVAVA---NRKRPSILAL 576 (721)
Q Consensus 560 ~l~~a~~---~~~~P~~Irl 576 (721)
+++.|++ ..++|++|-+
T Consensus 264 a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 264 ATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEE
Confidence 8888875 2478998865
No 97
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=62.14 E-value=15 Score=39.05 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=51.5
Q ss_pred chhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCCCChhhhHH-HhcCCCcEEEeeCCHHHHHHHHHHHHH---
Q 004970 492 FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS-FRAMPNILMLRPADGNETAGAYKVAVA--- 566 (721)
Q Consensus 492 ~~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~THq~~edia~-lr~iPnl~V~~P~d~~e~~~~l~~a~~--- 566 (721)
-..|.+ ..++.+..++..++||++++...+++.+..-..+....+++- .-.+|+++| -=.|..++..+++.|++
T Consensus 171 DGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~V-dG~D~~av~~a~~~A~~~~r 249 (365)
T 2ozl_A 171 DGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRV-DGMDILCVREATRFAAAYCR 249 (365)
T ss_dssp TTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEE-ETTCHHHHHHHHHHHHHHHH
T ss_pred chhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHH
Confidence 455543 245667778899999999998887764321011111122211 124676664 44478888888888874
Q ss_pred cCCCcEEEEE
Q 004970 567 NRKRPSILAL 576 (721)
Q Consensus 567 ~~~~P~~Irl 576 (721)
..++|++|-+
T Consensus 250 ~~~gP~lIe~ 259 (365)
T 2ozl_A 250 SGKGPILMEL 259 (365)
T ss_dssp TTCCCEEEEE
T ss_pred hCCCCEEEEE
Confidence 3579999865
No 98
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=61.90 E-value=19 Score=37.81 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEE-ECCCccChhhHHHHHH-HHHhcC--------CCeEEEEEECCCcc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI-LGDGCQMEGIANEASS-LAGHLG--------LGKLIAFYDDNHIS 246 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~v-iGDG~~~eG~~~Eal~-~a~~~~--------L~~li~IvddN~~~ 246 (721)
.++.|.|+|++. -+.++++ .+++. + ..++.+. .++.++ +.|+++++...+.
T Consensus 79 ~v~~a~G~A~~G---------------~rp~~~~tf~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~- 139 (342)
T 2bfd_B 79 IVGFGIGIAVTG---------------ATAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV- 139 (342)
T ss_dssp HHHHHHHHHHTT---------------CCEEEECSSGGGC-G--GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-
T ss_pred HHHHHHHHHHCC---------------CeeEEEecchhHH-H--HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-
Confidence 356677887642 2345544 78874 3 7777765 344333 2267777765443
Q ss_pred ccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 247 IDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 247 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
.++++... .+|+ ..+++. ||.++.+ . |..+....++.|.+ .++|++|-..
T Consensus 140 ~~G~th~~-~~d~-~~l~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~~p 190 (342)
T 2bfd_B 140 GHGALYHS-QSPE-AFFAHCPGIKVVIP---R-SPFQAKGLLLSCIE-DKNPCIFFEP 190 (342)
T ss_dssp SSCGGGSS-CCCH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred CCCcchhh-HhHH-HHHhcCCCcEEEee---C-CHHHHHHHHHHHHh-cCCcEEEEec
Confidence 35544322 2344 456776 9999988 4 99999999999987 6899988543
No 99
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=61.27 E-value=36 Score=39.45 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCeEEEEEECCCc--cccccccccccccHHHHHhhC-CCeEEEeccCCCCHHHHHHHHHHHHhcCC--C
Q 004970 222 NEASSLAGHLGLGKLIAFYDDNHI--SIDGDTEIAFTENVDKRFEGL-GWHVIWVKNGNTGYDDIRAAIKEAKAVTD--K 296 (721)
Q Consensus 222 ~Eal~~a~~~~L~~li~IvddN~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~--~ 296 (721)
..++..++..++ |+++++...++ +.++++. ...+++ ..+++. |+.++.+ . |..++..+++.|.+..+ +
T Consensus 472 ~~~ir~~al~~l-pvv~v~thdg~gvG~dG~TH-q~ied~-a~lr~iPnl~V~~P---a-d~~e~~~~l~~Ai~~~~~~~ 544 (700)
T 3rim_A 472 RPAVRLAALMDI-DTIYVWTHDSIGLGEDGPTH-QPIEHL-SALRAIPRLSVVRP---A-DANETAYAWRTILARRNGSG 544 (700)
T ss_dssp HHHHHHHHHHTC-CCEEEEECCSGGGCTTCTTT-SCSSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHhcCCCC-CEEEEEeCCCcccCCCCCcc-CChhHH-HHHhcCCCCEEEeC---C-CHHHHHHHHHHHHHccCCCC
Confidence 345778888998 67777754444 4556664 223344 456665 9999999 4 89999999999987345 6
Q ss_pred CEEEEE
Q 004970 297 PTLIRV 302 (721)
Q Consensus 297 P~lI~~ 302 (721)
|++|..
T Consensus 545 Pv~ir~ 550 (700)
T 3rim_A 545 PVGLIL 550 (700)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 998853
No 100
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=60.64 E-value=11 Score=40.64 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=43.8
Q ss_pred cEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHh---hCCCeEEEeccCCCCHH
Q 004970 205 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFE---GLGWHVIWVKNGNTGYD 281 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~---a~G~~~~~v~dG~~d~~ 281 (721)
+.+++.-|.|-. ..++.|..++..++|-++++.+..+.+...++.....+.+..++. .+||.++.+ . +++
T Consensus 89 r~~~~ts~~G~~---~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p---~-~~q 161 (395)
T 1yd7_A 89 KAMTATSGPGFS---LMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSP---S-TVQ 161 (395)
T ss_dssp CEEEEEETTHHH---HHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECC---C-SHH
T ss_pred cEEEEeCchHHH---HHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeC---C-CHH
Confidence 456666677765 457777777788886555555555443221221112122233333 357999888 4 777
Q ss_pred HHHHHHHHHH----hcCCCCEEEEEEEe
Q 004970 282 DIRAAIKEAK----AVTDKPTLIRVTTT 305 (721)
Q Consensus 282 ~l~~al~~a~----~~~~~P~lI~~~T~ 305 (721)
+....+..|. + .+.|+++...+.
T Consensus 162 ea~~l~~~A~~lA~~-~~~PVi~~~~~~ 188 (395)
T 1yd7_A 162 EAFDFTIRAFNLSEK-YRTPVILLTDAE 188 (395)
T ss_dssp HHHHHHHHHHHHHHH-HTSEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEcchh
Confidence 7665555543 4 468998876654
No 101
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=55.40 E-value=38 Score=36.54 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=50.9
Q ss_pred chhHHH-hHHHHHHHhhhcCCcEEEEEecCCcccCCCCCCC--C-Chhhh---HHHhcCCCcEEEeeCCHHHHHHHHHHH
Q 004970 492 FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q-PIEHL---ASFRAMPNILMLRPADGNETAGAYKVA 564 (721)
Q Consensus 492 ~~~F~~-r~~dqir~~a~~~~pV~~v~t~~g~~~g~dG~TH--q-~~edi---a~lr~iPnl~V~~P~d~~e~~~~l~~a 564 (721)
-..|.+ ..++.+..++..++||++++...+++.. ++++ . ...|+ +---.+|++.| -=.|..++..+++.|
T Consensus 212 DGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~--~~~~~~~~~~~d~a~~a~a~G~~~~~V-dG~D~~av~~a~~~A 288 (407)
T 1qs0_A 212 DGATAESDFHTALTFAHVYRAPVILNVVNNQWAIS--TFQAIAGGESTTFAGRGVGCGIASLRV-DGNDFVAVYAASRWA 288 (407)
T ss_dssp TGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETT--EEGGGGTTTTCCSTHHHHHTTCEEEEE-ETTCHHHHHHHHHHH
T ss_pred CchhhcChHHHHHHHHHHHCcCEEEEEECCCccee--eccccccCCCCCHHHHHHHcCCeEEEE-cCCCHHHHHHHHHHH
Confidence 455543 2456677778899999999988876532 2222 1 22333 32335565544 334677888888888
Q ss_pred HHc---CCCcEEEEE
Q 004970 565 VAN---RKRPSILAL 576 (721)
Q Consensus 565 ~~~---~~~P~~Irl 576 (721)
++. .++|++|-+
T Consensus 289 ~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 289 AERARRGLGPSLIEW 303 (407)
T ss_dssp HHHHHTTSCCEEEEE
T ss_pred HHHHHhcCCCEEEEE
Confidence 752 578998865
No 102
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=52.19 E-value=32 Score=39.29 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhhHHHH-HHHHHhcCCCeEEEEEECCCcc-cccccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEA-SSLAGHLGLGKLIAFYDDNHIS-IDGDTEIA 254 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~~~Ea-l~~a~~~~L~~li~IvddN~~~-i~~~~~~~ 254 (721)
.++.|.|+|++- -+.++++..+.. + ..++- ++.++..++ |++++....++. -++++...
T Consensus 376 ~~~~a~G~A~~G---------------~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~-pvv~~~~~~g~~g~dG~tH~~ 436 (629)
T 2o1x_A 376 AVTTAAGMALQG---------------MRPVVAIYSTFL-Q--RAYDQVLHDVAIEHL-NVTFCIDRAGIVGADGATHNG 436 (629)
T ss_dssp HHHHHHHHHHTT---------------CEEEEEEEHHHH-G--GGHHHHHHTTTTTTC-CCEEEEESBBCCCTTCTTTCB
T ss_pred HHHHHHHHHHcC---------------CEEEEEecHHHH-H--HHHHHHHHHHhhcCC-CEEEEEECCccCCCCCcccCc
Confidence 345677777642 345666766653 2 55554 566888898 577777766652 23333221
Q ss_pred ccccHHHHHhh-CCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEE
Q 004970 255 FTENVDKRFEG-LGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303 (721)
Q Consensus 255 ~~~~~~~~~~a-~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~ 303 (721)
.+|+ ..++. -||.++.+ . |..+....++.|.+ .+.|++|...
T Consensus 437 -~~d~-a~~r~iP~l~v~~P---~-d~~e~~~~~~~a~~-~~~Pv~i~~~ 479 (629)
T 2o1x_A 437 -VFDL-SFLRSIPGVRIGLP---K-DAAELRGMLKYAQT-HDGPFAIRYP 479 (629)
T ss_dssp -CSHH-HHTTTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEECC
T ss_pred -cHHH-HHHHccCCcEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEec
Confidence 2333 45666 49999998 4 89999999999988 6889988543
No 103
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=49.98 E-value=13 Score=35.26 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.4
Q ss_pred CCEEEEEeChhHHHHHHHHHHHHhCCCceEEEec
Q 004970 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 608 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
.||+||+.|..- +.+|-.|++.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 589999999843 4466778889999999984
No 104
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=45.94 E-value=62 Score=32.76 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=47.1
Q ss_pred eEEEEEECCCccccc---ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCC
Q 004970 235 KLIAFYDDNHISIDG---DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS 310 (721)
Q Consensus 235 ~li~IvddN~~~i~~---~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 310 (721)
-+.+|++|..|.-.. ... ....+.+.+.|+.+||+|....| - +.+++.+++++..+......=.-+..+-++|.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~ 110 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPN-L-KSEEINKFIQQTAEMDHSDADCLLVAVLTHGE 110 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecC-c-CHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC
Confidence 478888888776321 111 22345788999999999988744 4 68999999998865212332233344455554
No 105
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=45.69 E-value=51 Score=39.20 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh--HHHHHHHHHh--c--CCCeEEEEEECCCcccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--ANEASSLAGH--L--GLGKLIAFYDDNHISIDGD 250 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~--~~Eal~~a~~--~--~L~~li~IvddN~~~i~~~ 250 (721)
.++.|+|+|++.+ +.++++-.-=|.|..+- .+.-+-..++ | ++ |+++++...+.+ +++
T Consensus 596 ~vG~a~G~A~~G~--------------~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~-~vvi~~p~G~~G-~Gp 659 (868)
T 2yic_A 596 AVGFEYGYSVGNP--------------DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLS-DVVLLLPHGHEG-QGP 659 (868)
T ss_dssp HHHHHHHHHHHCT--------------TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCC-CCEEEEECCCSS-SCT
T ss_pred HHHHHHHHHccCC--------------CCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCC-CEEEEecCCCCC-CCh
Confidence 3667888887654 34555545455554443 3443433332 2 44 788888865533 444
Q ss_pred cccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc-CCCCEEEEEEEeec
Q 004970 251 TEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVTTTIG 307 (721)
Q Consensus 251 ~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg 307 (721)
+... ..+++..+..--||.++.+ . |+.+....|+.+... .++|++| .+.|+
T Consensus 660 ~Hs~~~~E~~l~l~~~pnm~V~~P---s-~p~~~~~lLr~a~~~~~~~Pvii--~~pk~ 712 (868)
T 2yic_A 660 DHTSGRIERFLQLWAEGSMTIAMP---S-TPANYFHLLRRHGKDGIQRPLIV--FTPKS 712 (868)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECC---C-SHHHHHHHHHHHHHSSCCCCEEE--EECSG
T ss_pred hhcCCcHHHHHhcCCCCCCEEEEe---C-CHHHHHHHHHHHHhcCCCCcEEE--EechH
Confidence 4322 2334443333349999888 4 999999999987652 2489766 45554
No 106
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=42.94 E-value=74 Score=31.93 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=45.8
Q ss_pred eEEEEEECCCccccc---ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCC
Q 004970 235 KLIAFYDDNHISIDG---DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGS 310 (721)
Q Consensus 235 ~li~IvddN~~~i~~---~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 310 (721)
-+.+|+||..|.... ..+ ....+.+.+.|+.+||+|....| - +.+++.+++++..+......=.-+..+-++|.
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~ 98 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKD-C-RYKDILRTIEYSASQNHSDSDCILVAILSHGE 98 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEE-C-SHHHHHHHHHHHHTSCCTTEEEEEEEEEECTT
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHHhhccCCCEEEEEEecCCC
Confidence 467778777775321 111 23345788999999999988755 3 68999999998765212333222344566665
Q ss_pred C
Q 004970 311 P 311 (721)
Q Consensus 311 ~ 311 (721)
.
T Consensus 99 ~ 99 (259)
T 3sir_A 99 M 99 (259)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=42.26 E-value=71 Score=31.87 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=46.9
Q ss_pred eEEEEEECCCccccccc----c-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccC
Q 004970 235 KLIAFYDDNHISIDGDT----E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~----~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G 309 (721)
-+.+|++|-.|.-.... . ....+.+.+.|+.+||+|....| - +.+++.+++++..+...+..=.-+..+-++|
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~~~~~~~d~~v~~~lsHG 94 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSKEDHSKRSSFVCVLLSHG 94 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHTSCCTTEEEEEEEEESCE
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHHhhccCCCEEEEEECCCC
Confidence 36778887777532111 1 22345688899999999988745 3 6899999999887632233322333455666
Q ss_pred C
Q 004970 310 S 310 (721)
Q Consensus 310 ~ 310 (721)
.
T Consensus 95 ~ 95 (250)
T 2j32_A 95 E 95 (250)
T ss_dssp E
T ss_pred C
Confidence 5
No 108
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=41.81 E-value=1.5e+02 Score=26.89 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=38.5
Q ss_pred EEEEEECCCcccccccc-----ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 236 LIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 236 li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
+++|+||..+.-..... ....+.+.+.|+.+||+|..-.| - +.+++.+.+++..+
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~ 77 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeC-C-CHHHHHHHHHHHHH
Confidence 77888877665331111 12345688899999999887644 4 68899999988766
No 109
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=40.40 E-value=1.2e+02 Score=30.88 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=47.9
Q ss_pred eEEEEEECCCcccccccc-----ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccC
Q 004970 235 KLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G 309 (721)
-+.+|++|-.|....... ....+.+.+.|+.+||+|....| - +.+++.++|++..+......=.-+..+-++|
T Consensus 45 g~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~f~~~dh~~~d~~vv~ilSHG 122 (277)
T 4ehd_A 45 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSKEDHSKRSSFVCVLLSHG 122 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHTSCCTTEEEEEEEEESCE
T ss_pred CEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHhhcccCCCEEEEEEEcCC
Confidence 488888888876321111 12345688899999999988744 4 6899999999886521233322334445555
Q ss_pred CC
Q 004970 310 SP 311 (721)
Q Consensus 310 ~~ 311 (721)
..
T Consensus 123 ~~ 124 (277)
T 4ehd_A 123 EE 124 (277)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 110
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=38.47 E-value=64 Score=38.68 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCc-EEEE-EECCCccChh--hHHHHHHHHH--hc--CCCeEEEEEECCCcccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDH-YTYV-ILGDGCQMEG--IANEASSLAG--HL--GLGKLIAFYDDNHISID 248 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~-~vv~-viGDG~~~eG--~~~Eal~~a~--~~--~L~~li~IvddN~~~i~ 248 (721)
.++.|.|+|++.+ .. .+|. ..|| |..| ..+.-+...+ .| ++ ++++++.. ++.-.
T Consensus 664 ~vg~a~G~A~~G~--------------~~lpv~e~qf~d--F~~~AQra~DQii~~~~ak~~~~~-~vv~~l~~-G~~g~ 725 (933)
T 2jgd_A 664 VLAFEYGYATAEP--------------RTLTIWEAQFGD--FANGAQVVIDQFISSGEQKWGRMC-GLVMLLPH-GYEGQ 725 (933)
T ss_dssp HHHHHHHHHHHCT--------------TSEEEEEC-CGG--GGGGGHHHHHHTTTTHHHHHCCCC-CCEEEEEC-CCSSS
T ss_pred HHHHHHHHHhcCC--------------CCCCEEEEEEhh--hhcccHHHHHHHHHHHHHHHccCC-CEEEEEeC-CCCCC
Confidence 4667777777643 22 3443 4555 4433 5565554333 33 44 78888886 44333
Q ss_pred ccccccccccHHHHHhh---CCCeEEEeccCCCCHHHHHHHHHHHH-hcCCCCEEEEEEEeecc
Q 004970 249 GDTEIAFTENVDKRFEG---LGWHVIWVKNGNTGYDDIRAAIKEAK-AVTDKPTLIRVTTTIGF 308 (721)
Q Consensus 249 ~~~~~~~~~~~~~~~~a---~G~~~~~v~dG~~d~~~l~~al~~a~-~~~~~P~lI~~~T~kg~ 308 (721)
+++. ....+..++.- -||.++.+ . |+.+....|+.+. +..++|++| .+.|+-
T Consensus 726 G~~H--ss~~~E~~l~~~~~pnm~V~~P---s-t~~e~~~lLr~a~~~~~~~Pvii--~~pk~l 781 (933)
T 2jgd_A 726 GPEH--SSARLERYLQLCAEQNMQVCVP---S-TPAQVYHMLRRQALRGMRRPLVV--MSPKSL 781 (933)
T ss_dssp CTTS--SCCCHHHHHHTCCTTCCEEECC---C-SHHHHHHHHHHHHHSSCCCCEEE--EECSGG
T ss_pred Cccc--ccchHHHHHHHhCCCCeEEEec---C-CHHHHHHHHHHHHHhcCCCcEEE--Eecchh
Confidence 4432 22224445543 48999888 4 9999999999874 413789877 666653
No 111
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=37.50 E-value=78 Score=32.67 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=47.7
Q ss_pred eEEEEEECCCcccccccc-----ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccC
Q 004970 235 KLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G 309 (721)
-+.+|++|..|.-..... ......+.+.|+.+||+|....| - +..++.+++++..+......=.-+..+-++|
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~~~h~~~d~~vv~ilsHG 147 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYND-C-SCAKMQDLLKKASEEDHTNAACFACILLSHG 147 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEES-C-CHHHHHHHHHHHHHSCGGGEEEEEEEEESCE
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecC-c-CHHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Confidence 378888888776332111 12345688899999999988755 3 6899999999886622122223334445666
Q ss_pred CC
Q 004970 310 SP 311 (721)
Q Consensus 310 ~~ 311 (721)
..
T Consensus 148 ~~ 149 (305)
T 1f1j_A 148 EE 149 (305)
T ss_dssp ET
T ss_pred CC
Confidence 53
No 112
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=35.50 E-value=47 Score=29.06 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=51.9
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCc-eEEEecCchhhhHHHHHHHhhhhc-ccCCceEEEEcccccccchhhh
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKA-VRVVSFVSWELFDEQSDAYKESVL-PAAVSARVSIEAGSTFGWEKIV 681 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~-~~VI~~~sl~pld~~~~~~~~~v~-~~~~~~~v~vE~~~~~G~~~~v 681 (721)
.+|+|.+.+ +..+.|.+|.+.|++.|+. .+.+|+..- .+..+...... ....+. |.+......|+....
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d----~~~~~~l~~~tg~~tvP~-vfI~g~~IGG~d~l~ 94 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDD----PELRQGIKDYSNWPTIPQ-VYLNGEFVGGCDILL 94 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSC----HHHHHHHHHHHTCCSSCE-EEETTEEEESHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCC----HHHHHHHHHHhCCCCcCe-EEECCEEEeChHHHH
Confidence 579999998 4778899999999999994 999998642 22111111221 123454 666555555554332
Q ss_pred cCCceEEEeccCCCCCCHHHHHHHhCCC
Q 004970 682 GSKGKAIGIDRFGASAPAGKIYKEFGIT 709 (721)
Q Consensus 682 ~~~~~~ig~d~f~~~g~~~~l~~~~gl~ 709 (721)
..-.+|.-.++++..|+.
T Consensus 95 ----------~l~~~G~L~~~L~~~g~~ 112 (118)
T 2wem_A 95 ----------QMHQNGDLVEELKKLGIH 112 (118)
T ss_dssp ----------HHHHHSHHHHHHHHTTCC
T ss_pred ----------HHHHCCCHHHHHHHcCCh
Confidence 112245556666666653
No 113
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=34.80 E-value=15 Score=33.38 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCEEEEEeChhHH-HHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
..|++||++|.... .--+..+.|++.||.++|-|-
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T 102 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQT 102 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 48999999998652 223455678999999999873
No 114
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=33.59 E-value=81 Score=32.00 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=39.7
Q ss_pred eEEEEEECCCcccccccc-----ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+.+|+||-.|.-..... ....+.+.+.|+.+||+|....| - +.+++.++|+++.+
T Consensus 22 g~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 82 (278)
T 3od5_A 22 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND-L-KAEELLLKIHEVST 82 (278)
T ss_dssp CEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred CEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHh
Confidence 477888887775321111 22345688999999999988744 3 68999999998765
No 115
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.22 E-value=1.2e+02 Score=25.34 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=50.9
Q ss_pred cEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCCccccccccccccccHHHHHhhCCCeEEEeccCCCCHHHHH
Q 004970 205 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIR 284 (721)
Q Consensus 205 ~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~ 284 (721)
..|++++.|-+..| .|+.+....+-..+++|+|..+- ..+.+..-.+.-||++..| +.++++.
T Consensus 52 tivvvvvddkewae----kairfvkslgaqvliiiydqdqn---------rleefsrevrrrgfevrtv----tspddfk 114 (134)
T 2l69_A 52 TIVVVVVDDKEWAE----KAIRFVKSLGAQVLIIIYDQDQN---------RLEEFSREVRRRGFEVRTV----TSPDDFK 114 (134)
T ss_dssp EEEEEECSSHHHHH----HHHHHHHHHCCCCEEEEECSCHH---------HHHHHHHHHHHTTCCEEEE----SSHHHHH
T ss_pred eEEEEEEccHHHHH----HHHHHHHhcCCeEEEEEEeCchh---------HHHHHHHHHHhcCceEEEe----cChHHHH
Confidence 46777777776543 47888888888788888875421 2234555566779999999 4899998
Q ss_pred HHHHHHHh
Q 004970 285 AAIKEAKA 292 (721)
Q Consensus 285 ~al~~a~~ 292 (721)
+.++....
T Consensus 115 kslerlir 122 (134)
T 2l69_A 115 KSLERLIR 122 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887644
No 116
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=32.68 E-value=17 Score=32.35 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=27.2
Q ss_pred CCCEEEEEeChhHH--HHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSELE--IAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v~--~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
+.|++||++|.... .--+..+.|++.||.+++.|-
T Consensus 61 ~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 61 GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 58999999999653 334556779999999998763
No 117
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=31.84 E-value=77 Score=32.07 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=39.6
Q ss_pred eEEEEEECCCccccccc----c-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDGDT----E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~----~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+.+|+||..|.-.... . ....+.+.+.|+.+||+|....| - +.+++.+++++..+
T Consensus 22 g~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~ 82 (277)
T 1nw9_B 22 GHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGD-L-TAKKMVLALLELAR 82 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcC-C-CHHHHHHHHHHHHH
Confidence 47788888777542111 1 22345688899999999987744 3 68899999998765
No 118
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=31.77 E-value=1.2e+02 Score=37.20 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcCCcEEEEEECCCccChhh--HHHHHHHHHh--c--CCCeEEEEEECCCcccccc
Q 004970 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--ANEASSLAGH--L--GLGKLIAFYDDNHISIDGD 250 (721)
Q Consensus 177 gl~~AvG~AlA~~~~~~~~~~~~~~~~~~~vv~viGDG~~~eG~--~~Eal~~a~~--~--~L~~li~IvddN~~~i~~~ 250 (721)
.++.|.|+|++.+ +.++++-+-=|.|..+- .+.-+-..++ | ++ ++++.+...+.+ .++
T Consensus 841 ~vg~a~G~A~~G~--------------~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~-~vv~~lp~G~~G-~G~ 904 (1113)
T 2xt6_A 841 AVGFEYGYSVGNP--------------DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLS-DVVLLLPHGHEG-QGP 904 (1113)
T ss_dssp HHHHHHHHHHHCT--------------TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCC-CCEEEEECCCSS-SCT
T ss_pred HHHHHHHHHhcCC--------------CCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCC-CEEEEeCCCCCC-CCh
Confidence 3667778877654 34555544455554443 3443322232 2 44 788888865533 444
Q ss_pred cccc-ccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhc-CCCCEEEEEEEeec
Q 004970 251 TEIA-FTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVTTTIG 307 (721)
Q Consensus 251 ~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg 307 (721)
+... ..+++..+..--||.++.+ . |+.+....|+.+... .++|++| .+.|+
T Consensus 905 ~Hs~~~~E~~l~l~~~pnm~V~~P---s-~~~~~~~lLr~a~~~~~~~Pvii--~~pk~ 957 (1113)
T 2xt6_A 905 DHTSGRIERFLQLWAEGSMTIAMP---S-TPANYFHLLRRHGKDGIQRPLIV--FTPKS 957 (1113)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECC---S-SHHHHHHHHHHHHHSSCCCCEEE--EECSG
T ss_pred hhhcccHHHHHhcCCCCCcEEEec---C-CHHHHHHHHHHHHhccCCCCEEE--EechH
Confidence 3221 1333333222349999888 4 999999999987652 2489766 55554
No 119
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=30.86 E-value=18 Score=32.45 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=26.9
Q ss_pred CCCEEEEEeChhH-HHHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
..|++||++|... ..--+..+.|++.||.+++-|-
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T 103 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMST 103 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 4899999999965 2223456678999999999873
No 120
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=30.68 E-value=1.4e+02 Score=27.99 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=38.5
Q ss_pred EEEEEECCCccccccc----c-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 236 LIAFYDDNHISIDGDT----E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 236 li~IvddN~~~i~~~~----~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
+++|+||..+.-.... + ....+.+.+.|+.+||+|..-.| - +..++.+.++++.+
T Consensus 46 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~d-l-t~~em~~~l~~~s~ 105 (173)
T 2ql9_A 46 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYND-C-SCAKMQDLLKKASE 105 (173)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred EEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHH
Confidence 7888888777532111 1 12345688899999999987633 3 68899999998765
No 121
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.73 E-value=1.1e+02 Score=25.94 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..|+|.+.+ +..+.|.+|.+.|.+.|+..+.+|+..
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~ 57 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILE 57 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCC
Confidence 578998888 377889999999999999999999864
No 122
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=29.59 E-value=1.6e+02 Score=27.85 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=39.2
Q ss_pred eEEEEEECCCcccccccc-----ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+++|+||-.+....... ....+.+.+.|+.+||+|..-.| - +..++.+.|+++.+
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 105 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND-L-KAEELLLKIHEVST 105 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHhh
Confidence 378888887765321111 12345688899999999987744 4 68899999998755
No 123
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=29.05 E-value=17 Score=32.78 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.7
Q ss_pred CCCEEEEEeChhHH-HHHHHHHHHHhCCCceEEEec
Q 004970 607 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 607 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
+.|++||++|.... .--+..+.|++.||.+++-|-
T Consensus 64 ~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 64 NPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECH
T ss_pred CCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 47999999999653 233455678889999999873
No 124
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=28.02 E-value=94 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..|+|.+-| +..+.|.+|.+.|++.|+..+.+|+..
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~ 55 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS 55 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC
Confidence 568888776 456788999999999999999999865
No 125
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=27.20 E-value=64 Score=28.53 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecC
Q 004970 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 642 (721)
Q Consensus 607 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~ 642 (721)
...++|+++|.+-.. .++.|.+.|.++.+||..
T Consensus 7 ~~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 357999999996654 566788889999999864
No 126
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=26.00 E-value=2.7e+02 Score=26.13 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=37.5
Q ss_pred CCEEEEEeCh-hHHHHHHHHHHHHhCCCceEEEecCchhhhHHHHHHHhhhhcccCCceEEEEcccccccc
Q 004970 608 PDVILIGTGS-ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 677 (721)
Q Consensus 608 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~~~~~~~v~~~~~~~~v~vE~~~~~G~ 677 (721)
+.|.||.-|. -...+.+|++.|++-|+..+| -+.+.-....+..+|.++....+.++ ++.=.+....+
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~V-iIa~AG~aa~L 80 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKV-IIAGAGGAAHL 80 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCE-EEEEEESSCCH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHHHHHHHHHHhCCCcE-EEEECCchhhh
Confidence 5666665443 568888999999988876553 22223333333334444444445554 54444444433
No 127
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=25.90 E-value=1.5e+02 Score=31.63 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=48.3
Q ss_pred eEEEEEECCCcccccccc--ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHhcCCCCEEEEEEEeeccCCC
Q 004970 235 KLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSP 311 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 311 (721)
.+.+|+.+|.|.-..+.. ......+.+.|+.+||++....| - +.+++.+++++..+ ..+|.=..+-.+-|+|..
T Consensus 6 r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~D-l-T~~eI~~aL~~f~~-~~~~~D~~l~yfsGHG~~ 81 (390)
T 3uoa_B 6 KVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLD-L-TEYEMRNAVDEFLL-LLDKGVYGLLYYAGHGYE 81 (390)
T ss_dssp EEEEEEECCCCSSSCCCSTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH-TCCTTCEEEEEEESCEEE
T ss_pred CEEEEEEecCCCCcccCCChHHHHHHHHHHHHHcCCeEEEeec-C-CHHHHHHHHHHHHh-hCCCCCEEEEEEecCccc
Confidence 577888888886432211 12335678889999999887755 3 68899999998766 333332333445576654
No 128
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=25.46 E-value=89 Score=32.33 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=39.9
Q ss_pred eEEEEEECCCccccc---ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDG---DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~---~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+.+|++|..|.-.. ... ....+.+.+.|+.+||+|....| - +..++.++|++..+
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~f~~ 120 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPN-L-KSEEINKFIQQTAE 120 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHH
Confidence 478888888776321 111 22345788999999999988744 4 68999999998765
No 129
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=25.43 E-value=26 Score=32.34 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=26.7
Q ss_pred CCCEEEEEeChhHH-HHHHHHHHHHhCCCceEEEe
Q 004970 607 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVS 640 (721)
Q Consensus 607 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~VI~ 640 (721)
+.+++||++|...+ .--+..+.|++.||.+++-|
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~ 122 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMD 122 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEEC
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeC
Confidence 47999999999653 33345677899999999987
No 130
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.30 E-value=1.3e+02 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.2
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..|+|.++| .....|.+|.+.|.+.|+..+.||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~ 74 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ 74 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC
Confidence 357777776 566788889999999999999999865
No 131
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=24.70 E-value=1.4e+02 Score=30.08 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=38.7
Q ss_pred eEEEEEECCCccccc-----------ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDG-----------DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~-----------~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+++|+||-.+.-.. ..+ ....+.+.+.|+.+||+|....| - +.+++.++|++..+
T Consensus 18 G~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 85 (271)
T 3h11_B 18 GYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDD-C-TVEQIYEILKIYQL 85 (271)
T ss_dssp CEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred CEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHH
Confidence 477778777665421 011 12335688899999999988744 3 68899999998765
No 132
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=24.02 E-value=1.6e+02 Score=27.30 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=38.0
Q ss_pred eEEEEEECCCccccc-----------ccc-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHHh
Q 004970 235 KLIAFYDDNHISIDG-----------DTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA 292 (721)
Q Consensus 235 ~li~IvddN~~~i~~-----------~~~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 292 (721)
-+++|+||-.+.-.. ..+ ....+.+.+.|+.+||+|....| - +..++.+.+++..+
T Consensus 24 G~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~ 91 (164)
T 1qtn_A 24 GYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDD-C-TVEQIYEILKIYQL 91 (164)
T ss_dssp CEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred eEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHH
Confidence 477788776665321 111 22335688899999999987633 3 68899999988755
No 133
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.52 E-value=65 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.9
Q ss_pred eChhHHHHHHHHHHHHhCCCceEEEecCchhh
Q 004970 615 TGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 646 (721)
Q Consensus 615 ~G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~p 646 (721)
+|+.-..|...++.|++.|++++++|+....+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~ 40 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI 40 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH
Confidence 46677778888888888899999999876544
No 134
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.45 E-value=1.4e+02 Score=28.23 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=37.9
Q ss_pred eEEEEEECCCccccccc-c-ccccccHHHHHhhCCCeEEEeccCCCCHHHHHHHHHHHH
Q 004970 235 KLIAFYDDNHISIDGDT-E-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 291 (721)
Q Consensus 235 ~li~IvddN~~~i~~~~-~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~ 291 (721)
-+.+|++|..|.-..+- . ....+.+.+.|+.+||+|....| - +.+++.+++++..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~f~ 100 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKN-L-TASDMTTELEAFA 100 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHH
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHH
Confidence 47778888777411110 1 22345688899999999987744 4 6899999998864
No 135
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.95 E-value=85 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCc---eEEEecCc
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKA---VRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~---~~VI~~~s 643 (721)
..|+|.+.| +....|.+|.+.|.+.|+. .+.+|+..
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~ 58 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE 58 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC
Confidence 578888888 3677888999999999998 88999764
No 136
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=21.88 E-value=1.4e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCEEEEEeC----hhHHHHHHHHHHHHhCCCceEEEecCc
Q 004970 608 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 643 (721)
Q Consensus 608 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~VI~~~s 643 (721)
..|+|.+.| +....|.+|.+.|++.|+..+.||+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~ 54 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 54 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC
Confidence 569999888 566788889999999999999999875
No 137
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=21.14 E-value=2.7e+02 Score=25.97 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=49.5
Q ss_pred CcEEEEEECCCccChhhHHHHHHHHHhcCCCeEEEEEECCC-----------cccccccc----ccccccHHHHHhhCCC
Q 004970 204 DHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH-----------ISIDGDTE----IAFTENVDKRFEGLGW 268 (721)
Q Consensus 204 ~~~vv~viGDG~~~eG~~~Eal~~a~~~~L~~li~IvddN~-----------~~i~~~~~----~~~~~~~~~~~~a~G~ 268 (721)
..++++++.||.-+.+...+++..+...+....++-+-+.. |.-+..-. ......+.++++.-|-
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 46799999999998886778888888877643333333211 10000000 1122346677777888
Q ss_pred eEEEeccCCCCHHHHHHHHHHH
Q 004970 269 HVIWVKNGNTGYDDIRAAIKEA 290 (721)
Q Consensus 269 ~~~~v~dG~~d~~~l~~al~~a 290 (721)
.++.+.+...+.+.+.+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~i~~l 212 (218)
T 3ibs_A 191 IYVRVDNSNSAQKAISQEISKM 212 (218)
T ss_dssp EEEEECSSSHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHHh
Confidence 8888833221344555555443
No 138
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=20.85 E-value=67 Score=33.00 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=24.2
Q ss_pred CEEEEEeChhHHHHHHHHHHHHhCCCceEEEec
Q 004970 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641 (721)
Q Consensus 609 dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~ 641 (721)
||+||+.|..- +-+|-.|.+.|++|.||+-
T Consensus 6 DViIVGaGpaG---l~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 6 DVLVVGGGPGG---STAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CEEEECcCHHH---HHHHHHHHHCCCcEEEEeC
Confidence 89999999843 3456678889999999974
No 139
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=20.84 E-value=2.2e+02 Score=28.35 Aligned_cols=100 Identities=16% Similarity=0.281 Sum_probs=56.0
Q ss_pred CCEEEEEe-ChhHHHHHHHHHHHHhCCCceEEEecCchhhhHHHH------------HHHhhhhccc--CCceEEEEccc
Q 004970 608 PDVILIGT-GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS------------DAYKESVLPA--AVSARVSIEAG 672 (721)
Q Consensus 608 ~dvtIva~-G~~v~~al~Aa~~L~~~Gi~~~VI~~~sl~pld~~~------------~~~~~~v~~~--~~~~~v~vE~~ 672 (721)
+.++|=++ |+.......+.+.|+++|++++|+......--+... .-|++...+. +..+ +.+-.-
T Consensus 6 k~i~vgat~~P~aeil~~vk~~l~k~Gi~leiv~F~Dy~~pN~AL~~G~iDaN~fQH~pyL~~~~k~~~g~~l-v~v~~~ 84 (249)
T 4got_A 6 KEIVVAATKTPHAEILKEAEPLLKEKGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKL-VNAGAV 84 (249)
T ss_dssp TEEEEEECTTTHHHHHHHHHHHHHTTTCEEEEECCSSTHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTCCE-EEEEEE
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCccchhHHHHcCCcceeeccCHHHHHHHHHhCCCCce-EEeeee
Confidence 44555333 444454445667889999999999988755444321 2344332222 3333 333322
Q ss_pred c--cccchh-h---hc--CCceEEEe-ccCCCCCCHHHHHHHhCC
Q 004970 673 S--TFGWEK-I---VG--SKGKAIGI-DRFGASAPAGKIYKEFGI 708 (721)
Q Consensus 673 ~--~~G~~~-~---v~--~~~~~ig~-d~f~~~g~~~~l~~~~gl 708 (721)
. ..|+.+ . +. ..+..|++ +.....|+.-.||+..||
T Consensus 85 ~~~P~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~aGL 129 (249)
T 4got_A 85 HLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGL 129 (249)
T ss_dssp EECCCEEECSSCSSGGGCCTTCEEEEECCGGGHHHHHHHHHHTTS
T ss_pred eeccccccccCcCchhhcCCCCEEEEecCccchHHHHHHHHHCCC
Confidence 2 244322 1 11 24578888 455556777888888886
No 140
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.26 E-value=1.1e+02 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCCEEEEEeChhHHHHHHHHHHHHhCCCceEEEecC
Q 004970 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 642 (721)
Q Consensus 607 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~VI~~~ 642 (721)
...+.|+++|.+- ...++.|.++|.++.++|..
T Consensus 6 ~~~v~I~G~G~iG---~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAG---VGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHH---HHHHHHHHHCCCeEEEEECC
Confidence 3679999999844 34667788889999999853
Done!