RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004970
(721 letters)
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 1330 bits (3445), Expect = 0.0
Identities = 546/654 (83%), Positives = 588/654 (89%), Gaps = 27/654 (4%)
Query: 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 154
IRFLA+DAV KANSGHPGLPMGCAPMGH+LYDEVM+YNPKNPYWFNRDRFVLSAGHGCML
Sbjct: 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCML 60
Query: 155 QYALLHLAGYDSVQ---------------------------VTTGPLGQGMANAVGLALA 187
QYALLHLAGYDSVQ VTTGPLGQG+ANAVGLALA
Sbjct: 61 QYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120
Query: 188 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 247
EKHLAAR+NKPD++IVDHYTY ILGDGCQMEGI+NEA+SLAGH GLGKLI YDDNHISI
Sbjct: 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180
Query: 248 DGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIG 307
DGDTEIAFTE+VDKR+E LGWH IWVKNGNT YD+IRAAIKEAKAVTDKPTLI+VTTTIG
Sbjct: 181 DGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240
Query: 308 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEW 367
+GSPNKANSYSVHG+ALG KEVDATRKNLGWPYEPFHVPEDVK HWS+H EGA LEAEW
Sbjct: 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300
Query: 368 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT 427
NAKFAEY+KKYPEEAAE KS+ SG+LP+GWEKALPT+TPE PA+ATRNLSQ CLNALAK
Sbjct: 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKV 360
Query: 428 LPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIP 487
LPGL+GGSADLASSNMTLLK FGDFQKDTPEERNVRFGVREHGMGAICNGIALHS GLIP
Sbjct: 361 LPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIP 420
Query: 488 YCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNIL 547
YCATFFVFTDYMRAA+R+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLAS RAMPNIL
Sbjct: 421 YCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNIL 480
Query: 548 MLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNK 607
MLRPADGNETAGAYKVAV NRKRP++LALSRQK+P+L GTSI+GVEKG Y+ISDNSSGNK
Sbjct: 481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNK 540
Query: 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 667
PD+ILIGTGSELEIAAKAA+ELRK GK VRVVS V WELF+EQSD YKESVLP++V+ARV
Sbjct: 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARV 600
Query: 668 SIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 721
S+EAGSTFGWEK VGSKGK IG+DRFGASAPAG +YKEFG T E V+ AAK +
Sbjct: 601 SVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVAAAKSLL 654
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 1022 bits (2645), Expect = 0.0
Identities = 371/658 (56%), Positives = 457/658 (69%), Gaps = 29/658 (4%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ N IRFL++DAV+KANSGHPG PMG A + ++L+ +++NP NP W NRDRFVLSA
Sbjct: 7 KLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA 66
Query: 149 GHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAV 182
GHG ML Y+LLHL GYD V+ TTGPLGQG+ANAV
Sbjct: 67 GHGSMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAV 126
Query: 183 GLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDD 242
G+ALAEKHLAA +N+P +IVDHYTYV++GDGC MEG+++EA+SLAGHL LGKLI YD
Sbjct: 127 GMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDS 186
Query: 243 NHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
N ISIDGDT ++FTE+V KRFE GW+VI V +G+ + I AI+EAKA TDKPTLI V
Sbjct: 187 NDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHD-LEAIDKAIEEAKASTDKPTLIIV 245
Query: 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 362
T IG GSPNK ++ VHG+ LG +EV A +K LGW EPF VPE+V + GA
Sbjct: 246 KTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAK 305
Query: 363 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 422
EA WN FA Y+KKYPE AAEF+ +G+LPA W LP + + ATR S LN
Sbjct: 306 AEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALN 365
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
ALAK LP L+GGSADLA SN+T + GDF + R + FGVRE M AI NGIALH
Sbjct: 366 ALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
G IPY TF VF+DY R A+R++AL VIYV THDSIG+GEDGPTHQP+E LAS RA
Sbjct: 426 -GFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRA 484
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 602
+PN+ ++RPAD NETA A+K A+ + P+ L L+RQ LP L T ++GV KGAY++ D
Sbjct: 485 IPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKD- 543
Query: 603 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAA 662
S G PDVILI TGSE+E+A +AA+EL G VRVVS S+ELF++Q + Y+ESVLP A
Sbjct: 544 SGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGA 603
Query: 663 VSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
V+ARV+IEAGS GW K VG G IG+D FGASAP +++KEFG T E V+ AK +
Sbjct: 604 VTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAPGDELFKEFGFTVENVVAKAKSL 661
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 895 bits (2316), Expect = 0.0
Identities = 350/663 (52%), Positives = 444/663 (66%), Gaps = 35/663 (5%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
D A+ EK N IR L+ D V+KANSGHPG PMG AP+ HIL+ EVM+YNPK+P W NRDR
Sbjct: 2 DGAIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDR 61
Query: 144 FVLSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQG 177
FVLS GH L Y++LHL GYD V+VTTGPLGQG
Sbjct: 62 FVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQG 121
Query: 178 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 237
+ANAVGLA+AEKHLAA++N+P + I D+Y YVI GDGC EG++ EA SLAGHLGL KLI
Sbjct: 122 IANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLI 181
Query: 238 AFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKP 297
YDDN I+IDG+T+++FTE+V+K++E GWHVI V NGNT +D +R AI+EAK KP
Sbjct: 182 VLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKP 241
Query: 298 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRH 356
LI V TTIG+GS +KA + VHG+ LG +++ ++ G P + FHV E+V++ + +H
Sbjct: 242 KLIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQH 300
Query: 357 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNL 416
V + W +FA+Y +P+EA + G+LP GWEK LP YT A ATR
Sbjct: 301 VEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKA 360
Query: 417 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 476
S+ LN L + LP L+GGSADL SN+T K DF K +PE R +RFGVREH M AI N
Sbjct: 361 SENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMN 420
Query: 477 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 536
GIA H G IP+ ATF F Y A+R++AL VIYV THDSIGLGEDGPTHQP+E
Sbjct: 421 GIAAHG-GFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET 479
Query: 537 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 596
LA RA PN+L++RPADG ET+GAY +A+AN K P+IL LSRQ P L G+SI+GV KGA
Sbjct: 480 LALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGA 539
Query: 597 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 656
YI+ D + N P +IL+ +GSE+ + +AA+ L K VRVVS WELFD+QS+ Y++
Sbjct: 540 YIVVDFT--NSPQLILVASGSEVSLCVEAAKALSKELN-VRVVSMPCWELFDQQSEEYQQ 596
Query: 657 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 716
SVLP+ +S+EA +FGWEK +GI FGASAPA +YK FG T E V+
Sbjct: 597 SVLPSGGVPVLSVEAYVSFGWEKYS---HVHVGISGFGASAPANALYKHFGFTVENVVEK 653
Query: 717 AKE 719
A+
Sbjct: 654 ARA 656
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 894 bits (2311), Expect = 0.0
Identities = 360/659 (54%), Positives = 451/659 (68%), Gaps = 34/659 (5%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+K N IR LAVDA++KA SGHPG P+G AP+ +L+ + +++NP NP W NRDRFVLS
Sbjct: 1 KKLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSN 60
Query: 149 GHGCMLQYALLHLAGYDS--------------------------VQVTTGPLGQGMANAV 182
GHG ML Y+LLHL GYD V+ TTGPLGQG+ANAV
Sbjct: 61 GHGSMLLYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAV 120
Query: 183 GLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDD 242
G+A+A+K LAA +NKP EIVDHYTYV +GDGC EGI+ E +SLAGHL LGKLI YD
Sbjct: 121 GMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDS 180
Query: 243 NHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
N ISIDG + +FTE+V KRFE GW V+ V++G+ I AAI+EAKA DKPTLI V
Sbjct: 181 NRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHD-LAAIDAAIEEAKASKDKPTLIEV 239
Query: 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE-GA 361
TTTIGFGSPNKA ++ VHG+ LG ++V T+KNLGW Y PF VP++V H+ + V E GA
Sbjct: 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA 299
Query: 362 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 421
E EWN FA Y+KKYPE AAEF SG+LPA W+K LP + + A ATR SQ L
Sbjct: 300 KAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVL 359
Query: 422 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 481
NA+A LP LLGGSADLA SN+T K GD + P + +GVRE MGAI NGIALH
Sbjct: 360 NAIANVLPELLGGSADLAPSNLTKWKGSGDLH-ENPLGNYIHYGVREFAMGAIMNGIALH 418
Query: 482 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 541
G PY TF +F DY R AIR++AL + VIYV THDSIG+GEDGPTHQPIE LAS R
Sbjct: 419 G-GFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLR 477
Query: 542 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISD 601
A+PN+ + RP DGNETA A+K A+ ++ P+ L LSRQ LP L +S++ V KG Y++ D
Sbjct: 478 AIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKD 537
Query: 602 NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 661
S PD+ILI TGSE+ +A +AA++L VRVVS S++LFD+Q + Y+ESVLPA
Sbjct: 538 --SKG-PDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPA 594
Query: 662 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
V+ R+++EAG+ W K G G +G+D FG SAP K+++EFG T E V+ AK++
Sbjct: 595 NVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKL 652
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 843 bits (2181), Expect = 0.0
Identities = 337/667 (50%), Positives = 408/667 (61%), Gaps = 109/667 (16%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ D L++ N IR L++DAV+KANSGHPG+PMG A + ++L+ +R++PKNP W N
Sbjct: 1 SMMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPL 174
RDRFVLSAGHG ML Y+LLHLAGYD V+ TTGPL
Sbjct: 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPL 120
Query: 175 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 234
GQG+ANAVG+ALAEK+LAA +N+P +IVDHYTYV+ GDG MEGI++EA SLAGHL LG
Sbjct: 121 GQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLG 180
Query: 235 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVT 294
LI YDDN ISIDG TE FTE+V KRFE GWHVI V + + I AAI+EAKA T
Sbjct: 181 NLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHD--VEAIDAAIEEAKAST 238
Query: 295 DKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWS 354
KPTLI T IG G+PNK +
Sbjct: 239 -KPTLIIAKTIIGKGAPNKEGT-------------------------------------- 259
Query: 355 RHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATR 414
H GA L AE E A K GW+ R
Sbjct: 260 -HKVHGAPLGAE--------------EIAAAKKE------LGWD--------------YR 284
Query: 415 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 474
S LNALAK LP L+GGSADLA SN T +K DF + R + +GVRE M AI
Sbjct: 285 KASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAI 344
Query: 475 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 534
NG+ALH G IP+ TF VF+DY R AIR++AL + VIYV THDSIG+GEDGPTHQP+
Sbjct: 345 ANGLALHG-GFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPV 403
Query: 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS-IDGVE 593
E LAS RA+PN+ ++RPAD NETA A+K A+ + PS L L+RQ LP L T+ +GV
Sbjct: 404 EQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVA 463
Query: 594 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDA 653
KG Y++ D PDVILI TGSE+ +A +AA+EL G VRVVS S ELFDEQ A
Sbjct: 464 KGGYVLRD-----DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAA 518
Query: 654 YKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAV 713
YKESVLPAAV+ARV++EAG GW K VG GK +GID FGASAPA +++KEFG T E +
Sbjct: 519 YKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENI 578
Query: 714 ITAAKEV 720
+ AAKE+
Sbjct: 579 VAAAKEL 585
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 790 bits (2041), Expect = 0.0
Identities = 338/660 (51%), Positives = 425/660 (64%), Gaps = 38/660 (5%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KANSGHPG PMG A + +L+ + +++NP NP W++RDRF+LS GH
Sbjct: 9 NAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHAS 68
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
ML Y+LLHL GYD V+ TTGPLGQG+ANAVGLA+
Sbjct: 69 MLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAI 128
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
AE+ LAA++N+P +EIVDHYTYV +GDGC MEGI++E SLAG LGLGKLI FYD N IS
Sbjct: 129 AERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGIS 188
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDG+TE FT++ KRFE WHVI +G+ I+ AI EA++V DKP+LI T I
Sbjct: 189 IDGETEGWFTDDTAKRFEAYHWHVIHEIDGHD-PQAIKEAILEAQSVKDKPSLIICRTII 247
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSPNKA HG+ LG +EV TR+ LGW + PF +P+++ W +G E
Sbjct: 248 GFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWD-AREKGEKAEQA 306
Query: 367 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 422
WN KFA Y+K YPE AAEF SG LP WEK Y E +PA+ ATR SQ L
Sbjct: 307 WNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLE 366
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
A LP LLGGSADLA SN+T+ ++D P + +GVRE GM AI NGIA H
Sbjct: 367 AYGPLLPELLGGSADLAPSNLTIWSGSKSLKED-PAGNYIHYGVREFGMTAIANGIAHHG 425
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
G +PY ATF +F +Y R A R++AL +A I V THDSIGLGEDGPTHQP+E LAS R
Sbjct: 426 -GFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRL 484
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 600
PN RP D E A A+K+A+ P+ L LSRQ L T + + +G YI+
Sbjct: 485 TPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILK 544
Query: 601 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 660
D SG KPD+ILI TGSE+EI +AAE+L G+ VRVVS S ++FD Q +AY+ESVLP
Sbjct: 545 D--SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLP 602
Query: 661 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
+ V+ARV++EAG W K VG KG IG+ FG SAPA K++ FG T E ++ AK++
Sbjct: 603 SNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIVAKAKKL 662
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 645 bits (1665), Expect = 0.0
Identities = 319/658 (48%), Positives = 416/658 (63%), Gaps = 38/658 (5%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + + +NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
ML Y+LLHL GYD V+ TTGPLGQG+ANAVG+A+
Sbjct: 69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAI 128
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN IS
Sbjct: 129 AEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS 188
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDG E FT++ RFE GWHVI +G+ D I+ A++EA+AVTDKP+L+ T I
Sbjct: 189 IDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDA-DSIKRAVEEARAVTDKPSLLMCKTII 247
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 248 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 306
Query: 367 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 422
WN KFA Y K YP+EAAEF G++PA ++ + + +PA+ A+R SQ +
Sbjct: 307 WNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIE 366
Query: 423 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 482
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGIALH
Sbjct: 367 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGIALHG 425
Query: 483 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 542
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 426 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 484
Query: 543 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 600
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 544
Query: 601 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 660
D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+ESVLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 661 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 718
AVSARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AK
Sbjct: 603 KAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAK 660
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 461 bits (1189), Expect = e-159
Identities = 193/331 (58%), Positives = 233/331 (70%), Gaps = 27/331 (8%)
Query: 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149
++ N IR LA+DAVEKA SGHPG PMG AP+ +L+ +R+NP +P W NRDRFVLS G
Sbjct: 4 RAANAIRALAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNG 63
Query: 150 HGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVG 183
H ML Y+LLHL GYD V+VTTGPLGQG+ANAVG
Sbjct: 64 HASMLLYSLLHLTGYDLSMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVG 123
Query: 184 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 243
+A+AE +LAA YN+P +IVDHYTYV LGDGC MEG+++EASSLAGHL LG LIAFYDDN
Sbjct: 124 MAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDDN 183
Query: 244 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303
ISIDG+TEI+FTE+ KRFE GWHVI V++G + I AAI+EAKA DKPTLI
Sbjct: 184 RISIDGETEISFTEDTAKRFEAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIICR 242
Query: 304 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 363
T IG+GSPNK ++ VHG+ LGA EV A ++ LGW Y+PF +P++V W VAEGA
Sbjct: 243 TVIGYGSPNKQGTHDVHGAPLGADEVAALKEKLGWDYKPFEIPQEVYDAWKEKVAEGAKA 302
Query: 364 EAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 394
EAEWN FA Y+K YPEEAAEF +G+LP
Sbjct: 303 EAEWNELFAAYKKAYPEEAAEFVRRLNGELP 333
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 352 bits (905), Expect = e-117
Identities = 116/267 (43%), Positives = 149/267 (55%), Gaps = 38/267 (14%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++D V+KA SGHPG + A + +LY +V++Y+P +P W NRDRFVLS GH
Sbjct: 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHAS 60
Query: 153 MLQYALLHLAGYDS-------------------------VQVTTGPLGQGMANAVGLALA 187
YA+L LAGY V+VTTG LGQG++ AVG+ALA
Sbjct: 61 PALYAVLALAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALA 120
Query: 188 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 247
EK L D+ YV+LGDG EG EA+S AGH L LIA D N I I
Sbjct: 121 EKLL----------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI 170
Query: 248 DGDT-EIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
DG T +I FTE++ K+FE GW+VI V + ++I AA++EAK KPTLI T
Sbjct: 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHD--VEEILAALEEAKKSKGKPTLIIAKTIK 228
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATR 333
G G P N+ HG LG +EV+ +
Sbjct: 229 GKGVPFMENTAKWHGKPLGEEEVELAK 255
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins. Thiamine
pyrophosphate (TPP) family, pyrimidine (PYR) binding
domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and the beta subunits of the E1
component of the human pyruvate dehydrogenase complex
(E1- PDHc), subfamily. The PYR domain is found in many
key metabolic enzymes which use TPP (also known as
thiamine diphosphate) as a cofactor. TPP binds in the
cleft formed by a PYR domain and a PP domain. The PYR
domain, binds the aminopyrimidine ring of TPP, the PP
domain binds the diphosphate residue. A polar
interaction between the conserved glutamate of the PYR
domain and the N1' of the TPP aminopyrimidine ring is
shared by most TPP-dependent enzymes, and participates
in the activation of TPP. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Like many TPP-dependent enzymes DXS and TK
are homodimers having a PYR and a PP domain on the same
subunit. TK has two active sites per dimer which lie
between PYR and PP domains of different subunits. For
DXS each active site is located at the interface of a
PYR and a PP domain from the same subunit. E1-PDHc is an
alpha2beta2 dimer-of-heterodimers having two active
sites but having the PYR and PP domains arranged on
separate subunits, the PYR domains on the beta subunits,
the PP domains on the alpha subunits. DXS is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis, it catalyzes a
transketolase-type condensation of pyruvate with
D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
TK catalyzes the transfer of a two-carbon unit from
ketose phosphates to aldose phosphates. In heterotrophic
organisms, TK provides a link between glycolysis and the
pentose phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. TK also plays a central role in the Calvin
cycle in plants. PDHc catalyzes the irreversible
oxidative decarboxylation of pyruvate to produce
acetyl-CoA in the bridging step between glycolysis and
the citric acid cycle. This subfamily includes the beta
subunits of the E1 component of the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). ADC participates in the
breakdown of acetoin. BCADC catalyzes the oxidative
decarboxylation of 4-methyl-2-oxopentanoate,
3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate
during the breakdown of branched chain amino acids.
Length = 156
Score = 201 bits (514), Expect = 5e-61
Identities = 66/165 (40%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 415 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 474
L LAK P ++ SADL S F K P+ R + G+ E M I
Sbjct: 1 KAFGEALLELAKKDPRIVALSADLGGSTGL-----DKFAKKFPD-RFIDVGIAEQNMVGI 54
Query: 475 CNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP 533
G+ALH GL P+ +TF F IR AL V +V TH I +GEDGPTHQ
Sbjct: 55 AAGLALH--GLKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG 112
Query: 534 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 578
IE +A RA+PN+ +LRPAD NETA A + A P + L R
Sbjct: 113 IEDIALLRAIPNMTVLRPADANETAAALEAA-LEYDGPVYIRLPR 156
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 193 bits (492), Expect = 9e-58
Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 412 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 471
ATR S L LAK P ++GG AD+A T+ K Q + R + G+ E M
Sbjct: 4 ATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLHPQ---GDGRVIDTGIAEQAM 60
Query: 472 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPT 530
I NG+ALH L P ATF F + AIR +AL + V +V+T D IG+GEDGPT
Sbjct: 61 VGIANGMALHGL-LPPVEATFGDFANRADDAIRHYAALGKLPVPFVVTRDPIGVGEDGPT 119
Query: 531 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH 583
HQ E LA RA+PN+ ++RP+D ET G + A+ P +L L RQ L H
Sbjct: 120 HQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIE-DDGPVVLRLPRQLLRH 171
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 157 bits (398), Expect = 1e-43
Identities = 85/245 (34%), Positives = 116/245 (47%), Gaps = 38/245 (15%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
E+ IR V + A SGH G + + +LY ++M +P +P W RDRF+LS
Sbjct: 11 ERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSK 70
Query: 149 GHGCMLQYALLHLAGY------------DS-------------VQVTTGPLGQGMANAVG 183
GH YA L GY S V+V+TG LGQG++ AVG
Sbjct: 71 GHAAPALYATLAEKGYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVG 130
Query: 184 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 243
+AL K L + YVILGDG EG EA+ A H L LIA D N
Sbjct: 131 MALGAK-LKGS---------PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRN 180
Query: 244 HISIDGDTE-IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
+ +DG+TE I E + ++E GW VI V G+ ++I A+++AK +PT+I
Sbjct: 181 KLQLDGETEEIMPKEPLADKWEAFGWEVIEVD-GHD-IEEIVEALEKAKGSKGRPTVIIA 238
Query: 303 TTTIG 307
T G
Sbjct: 239 KTVKG 243
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 133 bits (338), Expect = 1e-36
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 464 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDS-I 522
G+ E M G+ALH GL P FF F D + IR SA V V HD
Sbjct: 20 TGIAEQAMVGFAAGLALH--GLRPVVEIFFTFFDRAKDQIR-SAGASGNVPVVFRHDGGG 76
Query: 523 GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLP 582
G+GEDGPTH IE A RA+P + ++ P+D E G + A+ P ++ L R+ L
Sbjct: 77 GVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAI-RDDGPVVIRLERKSLY 135
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate
transport and metabolism].
Length = 312
Score = 120 bits (302), Expect = 6e-30
Identities = 95/322 (29%), Positives = 144/322 (44%), Gaps = 47/322 (14%)
Query: 421 LNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 480
L L + ++ ADL+SS T G F K+ P+ R G+ E M G+AL
Sbjct: 17 LAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPD-RFFNVGIAEQDMVGTAAGLAL 70
Query: 481 HSPGLIPYCATFFVFTDYMRAA---IRISALCEAG--VIYVMTHDSIGLGEDGPTHQPIE 535
G P+ +TF F R A IR S + V V TH + GEDG +HQ +E
Sbjct: 71 A--GKKPFVSTFAAF--LSRRAWEQIRNS-IAYNNLNVKIVATHAGVTYGEDGSSHQALE 125
Query: 536 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 595
+A R +PN+ ++ PAD ET +A+ K P + L R K+P + E G
Sbjct: 126 DIAIMRGLPNMTVIAPADAVETRAILD-QIADYKGPVYMRLGRGKVPVVVDEGGYTFEIG 184
Query: 596 -AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAY 654
A ++ D S D+ +I TG + A +AAE L+K G + V++ + + DEQ
Sbjct: 185 KANVLRDGS-----DLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQ---- 235
Query: 655 KESVLPAAVSAR--VSIEAGSTFGWEKIVGS------------KGKAIGI-DRFGASAPA 699
++L AA V+ E S G +GS + IG+ D FG S A
Sbjct: 236 --AILKAARETGRIVTAEEHSIIGG---LGSAVAEVLSENGPTPMRRIGVPDTFGRSGKA 290
Query: 700 GKIYKEFGITAEAVITAAKEVC 721
++ +G+ E++ E+
Sbjct: 291 DELLDYYGLDPESIAARVLELL 312
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 63.0 bits (154), Expect = 2e-11
Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 36/178 (20%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQV--TTGPLGQGMANAVGLALAEKHLAARYNKP 198
V AG+ Y L L G +G G+ A+G ALA
Sbjct: 13 DAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAP--------- 63
Query: 199 DNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN--HISIDGDTEIAFT 256
D I GDG M E ++ A GL +I +N + +I E +
Sbjct: 64 -----DRPVVCIAGDGGFMMTG-QELAT-AVRYGL-PVIVVVFNNGGYGTIRMHQEAFYG 115
Query: 257 ENV----------DKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTT 304
V E G + V++ +D+ AA+ EA A P LI V T
Sbjct: 116 GRVSGTDLSNPDFAALAEAYGAKGVRVEDP----EDLEAALAEALA-AGGPALIEVKT 168
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain. The
C-terminal domain of transketolase has been proposed as
a regulatory molecule binding site.
Length = 124
Score = 54.9 bits (133), Expect = 3e-09
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVS---WELFDE-QSDAYKESVLPA 661
DV ++ GS + A +AAEEL K G + V+ V + E + V+
Sbjct: 10 DDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEE 69
Query: 662 AVSARVSIEAG-STFGWEKIVGSKGKAI----GIDRFGASAPAGKIYKEFGITAEAV 713
AV R + + E+ + G D PA G+TAE +
Sbjct: 70 AV-KRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHGPAL-ELAYLGLTAEKI 124
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 58.9 bits (144), Expect = 6e-09
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 57/270 (21%)
Query: 477 GIALHSPGLIPYCA---TFF------VFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GE 526
G+A GL P A TF V D AL V + + D GL G
Sbjct: 339 GLATE--GLKPVVAIYSTFLQRAYDQVIHDV--------ALQNLPVTFAI--DRAGLVGA 386
Query: 527 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR-----QKL 581
DGPTHQ L+ R +PN++++ P+D NE A+A P + R +L
Sbjct: 387 DGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVEL 446
Query: 582 PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS- 640
P L I E ++ + DV ++ G+ L A KAAE L + VV
Sbjct: 447 PELEPLPIGKGE----VLREGE-----DVAILAFGTMLAEALKAAERL----ASATVVDA 493
Query: 641 -FVS---WELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 690
FV EL E + + E + + V +E + G + V +G+
Sbjct: 494 RFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAV-LEFLADHGLDVPV----LNLGL 548
Query: 691 -DRFGASAPAGKIYKEFGITAEAVITAAKE 719
D F ++ E G+ AE + E
Sbjct: 549 PDEFIDHGSREELLAELGLDAEGIARRILE 578
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 58.4 bits (142), Expect = 9e-09
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 525 GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH- 583
G DGPTHQ + L+ R +PN++++ P D E A+A P + R
Sbjct: 422 GADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV 481
Query: 584 LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--F 641
+ ++ +E G + G V ++ G+ L A K AE+L G +V VV F
Sbjct: 482 ILTPELEPLEIGKGEL--LKEG--EKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537
Query: 642 V---SWELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI-D 691
V L E + ++ E+V+ + V E + G V +G+ D
Sbjct: 538 VKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVL-EFLAAHGILVPV----LNLGLPD 592
Query: 692 RFGASAPAGKIYKEFGITAEAVITAAKE 719
F ++ E G+ AE + E
Sbjct: 593 EFIDHGSPEELLAELGLDAEGIARRILE 620
Score = 36.4 bits (85), Expect = 0.052
Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 56/187 (29%)
Query: 179 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 238
+ A+G+A A D +V ++GDG G+A EA + AG LI
Sbjct: 122 SAALGMAKA-----RDLKGEDRNVV-----AVIGDGALTGGMAFEALNNAGADLKSNLIV 171
Query: 239 FYDDNHISI---------------DGDTEIAFTENVDKR--------------------- 262
+DN +SI G + E K
Sbjct: 172 ILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKG 231
Query: 263 -------FEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFG-SPNKA 314
FE LG++ I +G+ +++ +K AK P L+ V T G G P +
Sbjct: 232 LLVPGTLFEELGFNYIGPIDGHN-LEELIPTLKNAKD-LKGPVLLHVVTKKGKGYKPAEE 289
Query: 315 NSYSVHG 321
+ HG
Sbjct: 290 DPIKYHG 296
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 55.2 bits (133), Expect = 1e-07
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)
Query: 520 DSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 578
D G+ G DG THQ ++ R +PN++++ P+D NE P +
Sbjct: 410 DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAV---- 465
Query: 579 QKLPHLAGTSIDGVEKGAYIISDNSSGNKP--DVILIGTGSELEIAAKAAEELRKGGKAV 636
+ P ++ + + S + ++++G G+ + A + AE L + G
Sbjct: 466 -RYPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEA 524
Query: 637 RVVS--FVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 694
VV FV L +E S +I G+ + + + K + + R G
Sbjct: 525 TVVDARFVK-PLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNKLVPVKRLG 583
Score = 30.9 bits (70), Expect = 2.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 181 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 240
+G+A+A + + D T ++GDG G+A EA + AG L +I
Sbjct: 120 GLGIAVAA----------EKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKT-DMIVIL 168
Query: 241 DDNHISI 247
+DN +SI
Sbjct: 169 NDNEMSI 175
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 49.9 bits (120), Expect = 7e-07
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 164 YDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANE 223
YD+ TG ++ A+G+A+A +++ ++GDG G+A E
Sbjct: 69 YDAF--GTGHSSTSISAALGMAVA-----RDLKGKKRKVI-----AVIGDGALTGGMAFE 116
Query: 224 ASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKR---FEGLGWHVIWVKNGNTGY 280
A + AG+L +I +DN +SI NV FE LG+ I +G+
Sbjct: 117 ALNNAGYLK-SNMIVILNDNEMSIS--------PNVGTPGNLFEELGFRYIGPVDGHN-I 166
Query: 281 DDIRAAIKEAKAVTDKPTLIRVTTTIGFG 309
+ + +KE K P L+ V T G G
Sbjct: 167 EALIKVLKEVKD-LKGPVLLHVVTKKGKG 194
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 49.6 bits (119), Expect = 5e-06
Identities = 132/635 (20%), Positives = 220/635 (34%), Gaps = 161/635 (25%)
Query: 137 YWFN--RDRFVLSAGHGC----ML---QYALLHLAGYDSVQVTTGP---------LGQ-- 176
Y FN +D+ V H ML + A L YD V T P +G
Sbjct: 57 YVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTS 116
Query: 177 -GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 235
+A A GLA A R K + + ++GDG G+A E + A L
Sbjct: 117 TSIALATGLAKA------RDLKGEKGNI----IAVIGDGSLSGGLALEGLNNAAELK-SN 165
Query: 236 LIAFYDDNHISIDG-------------DTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDD 282
LI +DN +SI DT N+ F+ +G +V++GN D
Sbjct: 166 LIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNL---FKAMGLDYRYVEDGN----D 218
Query: 283 IRAAIKEAKAV--TDKPTLIRVTTTIGFG-SPNKANSYSVHGSALGAKEVDATRKNLGWP 339
I + I+ K V D P ++ + T G G P + N + H W
Sbjct: 219 IESLIEAFKEVKDIDHPIVLHIHTLKGKGYQPAEENKEAFH-----------------W- 260
Query: 340 YEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK 399
H+P D++ S+ A G + +++ +Y K +E +I++
Sbjct: 261 ----HMPFDLETGQSKVPASGES----YSSVTLDYLLKKIKEGKPVVAINAA-------- 304
Query: 400 ALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE 459
+PG+ G +F+K P+
Sbjct: 305 ----------------------------IPGVFG---------------LKEFRKKYPD- 320
Query: 460 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYM-RAAIRISA-LCEAGVIYVM 517
+ V G+ E A +GIA + G P FV + ++ RA ++S L VM
Sbjct: 321 QYVDVGIAEQESVAFASGIA--ANGARP---VIFVNSTFLQRAYDQLSHDLAINNNPAVM 375
Query: 518 THDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 577
+ + TH I + +PN++ L P E + A+ + P + +
Sbjct: 376 IVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVP 435
Query: 578 RQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR-KGGKAV 636
+ T Y ++ V ++ G E+ K A++L+ + G
Sbjct: 436 EHGVES-GPTVDTDYSTLKYEVTKAGE----KVAILALGDFYELGEKVAKKLKEELGIDA 490
Query: 637 RVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST---FGWEKIV---GSKGKAI-- 688
+++ DE+ L V++E G FG EKI G+ +
Sbjct: 491 TLINPKFITGLDEELLEK----LKEDHELVVTLEDGILDGGFG-EKIARYYGNSDMKVLN 545
Query: 689 -GIDR-FGASAPAGKIYKEFGITAEAVITAAKEVC 721
G + F P ++YK +T E ++ V
Sbjct: 546 YGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 49.3 bits (118), Expect = 6e-06
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 32/261 (12%)
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRIS---ALCEAGVIYVMTHDSIGL-GEDGPTHQPI 534
L + GL P+CA + F R ++ AL V +V+ D GL G DG TH
Sbjct: 379 GLAAAGLKPFCAVYSTFLQ--RGYDQLLHDVALQNLPVRFVL--DRAGLVGADGATHAGA 434
Query: 535 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDG 591
LA +PN+ ++ P D E + A A+ P + R + + +I G
Sbjct: 435 FDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILG 494
Query: 592 VEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVSWEL--- 646
+ KG PDV ++ G+ L AA+ L G +V V FV L
Sbjct: 495 IGKGRVP------REGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFV-KPLDEA 547
Query: 647 FDEQSDAYKESVLP------AAVSARVSIEAGSTFGWEKIVGSKGKAIGI-DRFGASAPA 699
+ + V+ A V T + G K + +G+ DRF A
Sbjct: 548 LTDLLVRHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDG--GLKLRTLGLPDRFIDHASR 605
Query: 700 GKIYKEFGITAEAVITAAKEV 720
++Y E G+TA + A
Sbjct: 606 EEMYAEAGLTAPDIAAAVTGA 626
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 48.2 bits (115), Expect = 1e-05
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 511 AGVIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNIL-MLRPADGNETAGAYKVAVA 566
+ Y++T +G +HQ I+H+A+ +I+ + P D N Y +
Sbjct: 522 PSLNYLLTSHVWRQDHNGFSHQDPGFIDHVAN--KKSDIVRVYFPPDANTLLAVYDHCLR 579
Query: 567 NRKRPSILALSRQKLPHLAGTSID----GVEKGAYIISDNSSGN--KPDVILIGTGSE-L 619
+R + +++ S+Q P +++ GA I + +SG+ +PDV++ G
Sbjct: 580 SRNKINVIVASKQ--PRPQWLTMEQAEKHCTDGA-GIWEWASGDDGEPDVVMACAGDVPT 636
Query: 620 EIAAKAAEELRKGGK--AVRVVSFV 642
AA+ LR+ G VRVV+ V
Sbjct: 637 IEVLAAAQILREEGPELRVRVVNVV 661
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 44.4 bits (106), Expect = 1e-04
Identities = 38/138 (27%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 230
G +G + A G ALA K Y D GDG EG +EA + A
Sbjct: 103 NGIVGGQVPLAAGAALALK-----YRGEDR-----VAVCFFGDGATNEGDFHEALNFAAL 152
Query: 231 LGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKE 289
L +I ++N +I T ++ R G I V +GN + A KE
Sbjct: 153 WKL-PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV-DGND-VLAVYEAAKE 209
Query: 290 AKA---VTDKPTLIRVTT 304
A PTLI T
Sbjct: 210 AVERARAGGGPTLIEAVT 227
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
of E. coli PDC-like subfamily, TPP-binding module;
composed of proteins similar to the E1 component of the
Escherichia coli pyruvate dehydrogenase multienzyme
complex (PDC). PDC catalyzes the oxidative
decarboxylation of pyruvate and the subsequent
acetylation of coenzyme A to acetyl-CoA. The E1
component of PDC catalyzes the first step of the
multistep process, using TPP and a divalent cation as
cofactors. E. coli PDC is a homodimeric enzyme.
Length = 386
Score = 44.2 bits (105), Expect = 2e-04
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 165 DSVQVTTGPLGQGMANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANE 223
D + T +G G A+ A ++L R ++ V + LGDG E +
Sbjct: 111 DFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKV----WAFLGDGEMDEPESLG 166
Query: 224 ASSLAGHLGLGKLIAFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWVKNG 276
A LA L LI + N +DG E ++ F G GW+VI V G
Sbjct: 167 AIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKVIWG 221
Score = 29.2 bits (66), Expect = 8.1
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 277 NTGYDDIR---AAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSA--LGAKEVDA 331
N G D R AA K+A KPT+I T G+G + + E+ A
Sbjct: 286 NRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKA 345
Query: 332 TRKNLGWP 339
R G P
Sbjct: 346 LRDRFGIP 353
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 43.2 bits (101), Expect = 4e-04
Identities = 107/464 (23%), Positives = 171/464 (36%), Gaps = 128/464 (27%)
Query: 210 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI-----DGDTE------------ 252
++GDG G A EA + AG+L ++ D+ +S+ DG T+
Sbjct: 205 VIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRL 264
Query: 253 ----IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVTTTIG 307
E FE LG+H + +G+ DD+ + ++ K+ T P LI V T
Sbjct: 265 QSNCGMIRETSSTLFEELGFHYVGPVDGHN-IDDLVSILETLKSTKTIGPVLIHVVT--- 320
Query: 308 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEW 367
K G+PY AE A
Sbjct: 321 -------------------------EKGRGYPY-----------------AERA------ 332
Query: 368 NAKFAEYEKKYPEEAAEFKSISSGQ-LPAGWEKALPTYTPESPAEATRNLSQTCLNALAK 426
+ K+ K PE +FK+IS Q + + +AL + AEA +++
Sbjct: 333 DDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALI-----AEAEADKDIV--------- 378
Query: 427 TLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLI 486
+ +GG T+L +F + P R G+ E G+A GL
Sbjct: 379 AIHAAMGGG--------TMLNLF---ESRFPT-RCFDVGIAEQHAVTFAAGLACE--GLK 424
Query: 487 PYCATFFVFTDYMRAA----IRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFR 541
P+C +++ +M+ A + L + V + + D GL G DGPTH +
Sbjct: 425 PFCT---IYSSFMQRAYDQVVHDVDLQKLPVRFAI--DRAGLMGADGPTHCGAFDVTFMA 479
Query: 542 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG------ 595
+PN++++ P+D E A A RPS R + G S+ KG
Sbjct: 480 CLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRG---NGIGVSLPPGNKGVPLQIG 536
Query: 596 -AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 638
I+ D V L+G GS ++ +AA L + G + V
Sbjct: 537 RGRILRDGER-----VALLGYGSAVQRCLEAASMLSERGLKITV 575
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
component [Energy production and conversion].
Length = 887
Score = 43.1 bits (102), Expect = 5e-04
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 165 DSVQVTTGPLGQGMANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANE 223
D Q T +G G A+ A K+L AR ++ V + LGDG E +
Sbjct: 185 DFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKV----WAFLGDGEMDEPESRG 240
Query: 224 ASSLAGHLGLGKLIAFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWVKNGN 277
A + A L LI + N +DG E ++ F G GW+VI V G
Sbjct: 241 AITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKVIWGR 296
Score = 41.6 bits (98), Expect = 0.002
Identities = 115/551 (20%), Positives = 177/551 (32%), Gaps = 151/551 (27%)
Query: 271 IWVKN-GNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSV-H-GSALGAK 327
IW N G + + AA K+A+ +PT+I T G+G A ++ H +
Sbjct: 356 IWALNRGGHDPEKVYAAFKKAQEHKGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPD 415
Query: 328 EVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKS 387
++ R G P ++++ H E + E KY
Sbjct: 416 QLKEFRDRFGIPVSD----AELEELPYYHFGEDS------------PEYKYLHAR----- 454
Query: 388 ISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNM---- 443
AL Y P + T L L+ LL G + S+ M
Sbjct: 455 ----------RAALGGYLPARRPKFTPALPVPSLSDFQA----LLKGQGEEISTTMAFVR 500
Query: 444 ---TLLK--------------------MFGDF----------QKDTPEERNVRFGVRE-- 468
LLK M G F Q+ TP++R+ +E
Sbjct: 501 ILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAE 560
Query: 469 ---------HGMGAICNGIA------LHSPGLIPYCATFFVFTDYMRAAIRISALCEA-- 511
+ GA + IA H +IP F+++ M RI L A
Sbjct: 561 SGQILQEGINEAGAFASWIAAGTSYSTHGEPMIP----FYIYYS-MFGFQRIGDLLWAAG 615
Query: 512 -----GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA-------- 558
G + T L +G H+ +PN + PA E A
Sbjct: 616 DQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLR 675
Query: 559 ---------GAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPD 609
Y + ++N P P + + +G+ KG Y + K
Sbjct: 676 RMYGEGQENVFYYITLSNENYPQ---------PAMPEGAEEGIIKGIYKLETPGGQGKAK 726
Query: 610 VILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSW-ELFDEQSDA-------------- 653
V L+G+G+ L A +AAE L K G + S S+ EL + A
Sbjct: 727 VQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRV 786
Query: 654 -YKESVLPAAVSARVSIEAGSTFGWEKI---VGSKGKAIGIDRFGASAPAGKIYKEFGIT 709
Y VL A V++ E+I V + + +G D FG S + + F +
Sbjct: 787 PYVAQVLNADGPV-VAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVD 845
Query: 710 AEAVITAAKEV 720
A V+ AA
Sbjct: 846 AYYVVVAALSA 856
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 39.9 bits (94), Expect = 0.001
Identities = 48/207 (23%), Positives = 66/207 (31%), Gaps = 78/207 (37%)
Query: 116 GCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLG 175
GC M Y Y + P R++ S G G M G
Sbjct: 3 GCHQMWAARY-----YRFRPPR-----RYLTSGGLGTM---------------------G 31
Query: 176 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLA------ 228
G+ A+G LA +PD +V I GDG QM E ++
Sbjct: 32 YGLPAAIGAKLA---------RPDRPVV-----AIAGDGGFQM--NLQELATAVRYNLPI 75
Query: 229 -------GHLGL--GKLIAFYDDNHISIDGDTEIAFTENVDKRF----EGLGWHVIWVKN 275
G G+ G+ F + DG VD F E G V++
Sbjct: 76 TVVVLNNGGYGMTRGQQTPFGGGRYSGPDGKDL----PPVD--FAKLAEAYGAKGARVES 129
Query: 276 GNTGYDDIRAAIKEAKAVTDKPTLIRV 302
+++ A+KEA D P LI V
Sbjct: 130 ----PEELEEALKEALE-HDGPALIDV 151
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 41.0 bits (96), Expect = 0.002
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 452 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALC 509
F + P R G+ E G+A GL P+CA + F+ Y + + L
Sbjct: 392 FARRFPT-RCFDVGIAEQHAVTFAAGLACE--GLKPFCAIYSSFLQRGYDQVVHDVD-LQ 447
Query: 510 EAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 568
+ V + M D GL G DGPTH + +PN++++ P+D E A A
Sbjct: 448 KLPVRFAM--DRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAID 505
Query: 569 KRPSILALSR------QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 622
RPS R Q P+ G I+ V KG ++ V L+G G+ ++
Sbjct: 506 DRPSCFRYPRGNGIGVQLPPNNKGIPIE-VGKGRILLEGE------RVALLGYGTAVQSC 558
Query: 623 AKAAEELRKGGKAVRV 638
AA L + G + V
Sbjct: 559 LAAASLLERHGLSATV 574
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 36.2 bits (83), Expect = 0.073
Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 35/202 (17%)
Query: 452 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF-----------TDYMR 500
FQ+ P+ R G+ E A+ L S GL P+C F D R
Sbjct: 417 FQERFPD-RFFNVGMAEQH--AVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQR 473
Query: 501 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 560
A+R + AG++ G DGP +A ++PN++ + PAD +E
Sbjct: 474 KAVRF-VITSAGLV----------GSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNM 522
Query: 561 YKVAVANRKRPSILALSRQKL---PHLAGTSID-GVEKGAYIISDNSSGNKPDVILIGTG 616
A RP R + +L T + + +G ++ DV L+G G
Sbjct: 523 VATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQ------DVALLGYG 576
Query: 617 SELEIAAKAAEELRKGGKAVRV 638
+ ++ A L K G V V
Sbjct: 577 AMVQNCLHAHSLLSKLGLNVTV 598
>gnl|CDD|235379 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 35.5 bits (83), Expect = 0.12
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 551 PADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDG----VEKGAYIIS--DNSS 604
P D N + +R +++ +Q P S+D KG I N
Sbjct: 553 PPDANTLLAVADHCLRSRNYINVIVAGKQ--PRPQWLSMDEARKHCTKGLGIWDWASNDD 610
Query: 605 GNKPDVILIGTGSE--LEIAAKAAEELRKGGKA--VRVVSFV 642
G +PDV+L G LE A AA+ LR+ +RVV+ V
Sbjct: 611 GEEPDVVLACAGDVPTLETLA-AADLLREHFPDLKIRVVNVV 651
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 34.2 bits (79), Expect = 0.21
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 26/142 (18%)
Query: 172 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL 231
G +G + A G ALA K Y + + GDG +G +EA + A
Sbjct: 136 GIVGTQIPLAAGAALALK-----YRGTKDGV----AVAFFGDGATNQGDFHEALNFAAVW 186
Query: 232 GLGKLIAFYDDNHISIDGDTEIAFT---ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 288
L ++ ++N +I + E + R G + V +GN D+ A +
Sbjct: 187 KL-PVVFVIENNQYAI--SVPRSRQTAAEIIAARAAAYGIPGVRV-DGN----DVLAVYE 238
Query: 289 EAKAVTDK------PTLIRVTT 304
AK ++ PTLI T
Sbjct: 239 AAKEAVERARAGEGPTLIEAVT 260
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 34.2 bits (79), Expect = 0.25
Identities = 54/265 (20%), Positives = 86/265 (32%), Gaps = 68/265 (25%)
Query: 66 QASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILY 125
+PI A TLE AL+E+ + R ++ + +A + + L + I
Sbjct: 308 PVDVPIVGDAKATLE-----ALLEE-LKPERAAWLEELLEARAAYRDLALEELADDGIKP 361
Query: 126 DEVM----RYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVTT--GPLGQGMA 179
V+ P + V G M + G +G G+
Sbjct: 362 QYVIKVLRELLPDD------AIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLP 415
Query: 180 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLA---------- 228
A+G LA PD ++V I GDG M G E +
Sbjct: 416 AAIGAKLA---------APDRKVV-----AIAGDGGFMMNG--QELETAVRYGLPVKIVV 459
Query: 229 ---GHLGLGKLI--AFYDDNHISIDGDT----EIAFTENVDKRFEGLGWHVIWVKNGNTG 279
G G+ + FY + D ++A E G I V+
Sbjct: 460 LNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLA---------EAYGAKGIRVET---- 506
Query: 280 YDDIRAAIKEAKAVTDKPTLIRVTT 304
+++ A++EA A +D P LI V
Sbjct: 507 PEELEEALEEALA-SDGPVLIDVVV 530
>gnl|CDD|199897 cd10911, LabA, LabA_like proteins. A well conserved group of
bacterial and archaeal proteins with no defined
function. LabA, a member from Synechococcus elongatus
PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. LabA_like domains exhibit some similarity to
the NYN domain, a distant relative of the PIN-domain
nucleases.
Length = 155
Score = 31.4 bits (72), Expect = 0.85
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 607 KPDVILIGTG-SELEIAAKAAEELRKGGKAVRVVSF---VSWELFDEQSDAY 654
DV+++ +G + +A L+ GK V VVSF S EL +D +
Sbjct: 104 NLDVVVLVSGDGDFAPLVEA---LQARGKRVEVVSFRENTSDELRR-AADRF 151
>gnl|CDD|146952 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). Rpb2 is the
second largest subunit of the RNA polymerase. This
domain comprised of the structural domains anchor and
clamp. The clamp region (C-terminal) contains a
zinc-binding motif. The clamp region is named due to its
interaction with the clamp domain found in Rpb1. The
domain also contains a region termed "switch 4". The
switches within the polymerase are thought to signal
different stages of transcription.
Length = 78
Score = 29.7 bits (68), Expect = 0.91
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 471 MGAICNGIALHSPGLIPYCATFFVFTDYMRA 501
AIC G + PG IP +F + +R+
Sbjct: 40 YAAICKGKTIIEPGDIPE--SFKLLLQELRS 68
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 32.4 bits (74), Expect = 1.1
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)
Query: 574 LALSRQK--LPHLAGTSIDGVEKGAYIISDNSSGNK----PDVILIGTGSELEIAAKAAE 627
LA+ QK + G + GV G + + + G V++IG G+ AA+ A
Sbjct: 284 LAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTA- 342
Query: 628 ELRKGGKAVRVVSFVSWELFD----EQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGS 683
LR G ++V ++ + E E +A E V ++A VSIE G ++
Sbjct: 343 -LRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSE--GGLELTAI 399
Query: 684 KGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 716
K + D G P EF + A+ VI+A
Sbjct: 400 KMQQGEPDESGRRRPVPVEGSEFTLQADTVISA 432
>gnl|CDD|238936 cd01977, Nitrogenase_VFe_alpha, Nitrogenase_VFe_alpha -like:
Nitrogenase VFe protein, alpha subunit like. This group
contains proteins similar to the alpha subunits of, the
VFe protein of the vanadium-dependent (V-) nitrogenase
and the FeFe protein of the iron only (Fe-) nitrogenase
Nitrogenase catalyzes the ATP-dependent reduction of
dinitrogen (N2) to ammonia. In addition to V- and Fe-
nitrogenases there is a molybdenum (Mo)-dependent
nitrogenase which is the most widespread and best
characterized of these systems. These systems consist
of component 1 (VFe protein, FeFe protein or, MoFe
protein respectively) and, component 2 (Fe protein).
MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases
are alpha2beta2delta2 hexamers. The alpha and beta
subunits of VFe and FeFe are similar to the alpha and
beta subunits of MoFe. For MoFe each alphabeta pair
contains one P-cluster (at the alphabeta interface) and,
one molecule of iron molybdenum cofactor (FeMoco)
contained within the alpha subunit. The Fe protein which
has a practically identical structure in all three
systems, it contains a single [4Fe-4S] cluster.
Electrons are transferred from the [4Fe-4S] cluster of
the Fe protein to the P-cluster of the MoFe and in turn
to FeMoCo, the site of substrate reduction. The
V-nitrogenase requires an iron-vanadium cofactor
(FeVco), the iron only-nitrogenase an iron only cofactor
(FeFeco). These cofactors are analogous to the FeMoco.
The V-nitrogenase has P clusters identical to those of
MoFe. In addition to N2, nitrogenase also catalyzes the
reduction of a variety of other substrates such as
acetylene The V-nitrogenase differs from the
Mo-nitrogenase in that it produces free hydrazine, as a
minor product during dinitrogen reduction and, ethane
as a minor product during acetylene reduction.
Length = 415
Score = 31.6 bits (72), Expect = 1.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 240 YDDNHI---SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 285
Y N+I +I GDTE+ + K FE +G V+ GN YDD+R
Sbjct: 163 YTINYIGDYNIQGDTEV-----LQKYFERMGIQVLSTFTGNGTYDDLRW 206
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 30.6 bits (70), Expect = 1.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 168 QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 214
+ G LG G+ AVG ALA PD ++V I+GDG
Sbjct: 45 TLRGGGLGWGLPAAVGAALA---------NPDRKVV-----AIIGDG 77
>gnl|CDD|177775 PLN00180, PLN00180, NDF6 (NDH-dependent flow 6); Provisional.
Length = 180
Score = 30.6 bits (69), Expect = 2.0
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 5 SSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRRLST 64
+ FT ++ + +H S H L S SG + S S +++
Sbjct: 3 TPFTKTKPHIPSSYAHSTKQDSGPCHGLLAQCSSGRFLSGWVNEKRSKNSKRGSLCKVNA 62
Query: 65 SQASLPIRAAAVETLETSTDAALVEKSV 92
LP+ A VE +E D + KS+
Sbjct: 63 LPHDLPLMAVMVEHVEGQRD-YITHKSI 89
>gnl|CDD|221377 pfam12012, DUF3504, Domain of unknown function (DUF3504). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 156 to 173 amino acids in length.
Length = 172
Score = 30.1 bits (68), Expect = 2.3
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 5 SSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRRLST 64
S L L T + G +H RL+ ++ + + LR + RR
Sbjct: 22 SPIVLLNTLWFFNTKYFGLRTLEQHRRLSFGNVTRQTRPNPDTEKKVFLRYYSPSRR-PR 80
Query: 65 SQASLPIRAAAVETLETSTDAALVEKSVNTIR 96
S + E E S +R
Sbjct: 81 SADDVVAVGKRKHKEEDEPVLEQRENSDGPLR 112
>gnl|CDD|147071 pfam04725, PsbR, Photosystem II 10 kDa polypeptide PsbR. This
protein is associated with the oxygen-evolving complex
of photosystem II. Its function in photosynthesis is not
known. The C-terminal hydrophobic region functions as a
thylakoid transfer signal but is not removed.
Length = 99
Score = 29.0 bits (65), Expect = 2.5
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 402 PTYTPE--SPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTL 445
P YTP+ SP+ T L A TL GLLGG A L + L
Sbjct: 52 PIYTPDEWSPSGDVYVGGTTGLAIWAVTLAGLLGGGALLVYNTSAL 97
>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598).
This is a large family of uncharacterized proteins found
in all domains of life. The structure shows a novel fold
with three beta sheets. A dimeric form is found in the
crystal structure. It was suggested that the cleft in
between the two monomers might bing nucleic acid.
Length = 109
Score = 29.1 bits (66), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 606 NKPDVILIGTGSELEIAAKAAEE-LRKGGKAVRVVS 640
P+V++IGTG+ L E LRK G V V+
Sbjct: 52 PDPEVLIIGTGARLRFLPPELREALRKLGIGVEVMD 87
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 31.0 bits (70), Expect = 3.0
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 26 SSEHHRLALS------TLSLPSFSGLKS-----TSSSTLRTPTSRRRLSTSQASLPIRAA 74
S E +ALS L LP G S RT RL TS SL +R A
Sbjct: 93 SPEQSHVALSGPRGVMILELPRRWGKDSEFEGGKKQINCRTFPLAERLFTSSTSLELRQA 152
Query: 75 AVETLETSTDAALVEKSVNTIRF 97
E S L+ S NTIR
Sbjct: 153 RWYPSEVSEPHLLLLTSDNTIRV 175
>gnl|CDD|237267 PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1;
Provisional.
Length = 896
Score = 31.1 bits (71), Expect = 3.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 582 PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVS 640
P L + +G+ KG Y ++ ++ P V L+G+G+ L AA L G V S
Sbjct: 709 PALPEGAEEGILKGMYRLA--AAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWS 766
Query: 641 FVSW-EL 646
S+ EL
Sbjct: 767 VTSFTEL 773
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 30.3 bits (69), Expect = 3.2
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 651
DV ++G GS++ +A KAAEEL K G + V+ S +D ++
Sbjct: 235 DVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRET 277
>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain. The members of this
family include: Mth938, 2P1, Xcr35, Rpa2829, and several
uncharacterized sequences. Mth938 is a hypothetical
protein encoded by the Methanobacterium
thermoautotrophicum (Mth) genome. This protein
crystallizes as a dimer, although it is monomeric in
solution, with one disulfide bond in each monomer. 2P1
is a partially characterized nuclear protein which is
homologous to E3-3 from rat and known to be alternately
spliced. Xcr35 and Rpa2829 are hypothetical proteins of
unknown function from the Xanthomonas campestris and
Rhodopseudomonas palustris genomes, respectively, for
which the crystal structures have been determined.
Length = 109
Score = 28.8 bits (65), Expect = 3.5
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 559 GAYKVAVAN-RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 617
G +A R +L L +P GTS+ ++ A + + ++PD++LIGTG+
Sbjct: 6 GPGGFRIAGQVYRGPLLVLPDGVVP-WDGTSLSDLDPEA--LLPLLAEDRPDILLIGTGA 62
Query: 618 ELEIAAKAA-EELRKGGKAVRVVS 640
E+ +A LR G V V+S
Sbjct: 63 EIAFLPRALRAALRAAGIGVEVMS 86
>gnl|CDD|233603 TIGR01862, N2-ase-Ialpha, nitrogenase component I, alpha chain.
This model represents the alpha chain of all three
varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of
nitrogenase [Central intermediary metabolism, Nitrogen
fixation].
Length = 443
Score = 30.1 bits (68), Expect = 4.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 240 YDDNHI---SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIK 288
YD N I +I GD + + E +G V+ G+ YD+IR K
Sbjct: 192 YDVNIIGEYNIGGDAWV-----MRIYLEEMGIQVVATFTGDGTYDEIRLMHK 238
>gnl|CDD|188127 TIGR01284, alt_nitrog_alph, nitrogenase alpha chain. This model
represents the alpha chains of various forms of the
nitrogen-fixing enzyme nitrogenase: vanadium-iron,
iron-iron, and molybdenum-iron. Most examples of NifD,
the molybdenum-iron type nitrogenase alpha chain, are
excluded from this model and described instead by
equivalog model TIGR01282. It appears by phylogenetic
and UPGMA trees that this model represents a distinct
clade of NifD homologs, in which arose several
molybdenum-independent forms [Central intermediary
metabolism, Nitrogen fixation].
Length = 457
Score = 30.2 bits (68), Expect = 4.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 240 YDDNHI---SIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 285
YD N I +I GD + + K FE +G V+ GN YD++R
Sbjct: 200 YDVNLIGEYNIQGDLWV-----LKKYFERMGIQVLSTFTGNGCYDELRW 243
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 30.1 bits (68), Expect = 4.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 18/76 (23%)
Query: 276 GNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKN 335
G +G D IK A+A T +P +I T N+Y HGS G+ + N
Sbjct: 109 GLSGSDANDGIIKFARAYTGRPYIISFT-----------NAY--HGSTYGSLSMSGISLN 155
Query: 336 LGWPYEP-----FHVP 346
+ Y P H+P
Sbjct: 156 MRRKYGPLLPGFVHIP 171
>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. Most members of this family are pyruvate
dehydrogenase complex, E1 component. Note: this family
was classified as subfamily rather than equivalog
because it includes a counterexample from Pseudomonas
putida, MdeB, that is active as an E1 component of an
alpha-ketoglutarate dehydrogenase complex rather than a
pyruvate dehydrogase complex. The second pyruvate
dehydrogenase complex E1 protein from Alcaligenes
eutrophus, PdhE, complements an aceE mutant of E. coli
but is not part of a pyruvate dehydrogenase complex
operon, is more similar to the Pseudomonas putida MdeB
than to E. coli AceE, and may have also have a different
primary specificity.
Length = 885
Score = 30.1 bits (68), Expect = 4.8
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 168 QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 227
Q T +G G NA+ A K+L R K D + LGDG E + A +
Sbjct: 185 QFPTVSMGLGPINAIYQARFMKYLENRGLKDTG---DQKVWAFLGDGEMDEPESKGAITF 241
Query: 228 AGHLGLGKLIAFYDDNHISIDG----DTEIAFTENVDKRFEGLGWHVIWV 273
A L L + N +DG + +I + ++ F G GW+VI V
Sbjct: 242 AAREKLDNLTFVINCNLQRLDGPVRGNGKI--IQELESLFRGAGWNVIKV 289
>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, an N5-CAIR mutase [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 156
Score = 29.1 bits (66), Expect = 5.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 610 VILIGTGSELEIAAKAAEELRKGGKA--VRVVS 640
I++G+ S+L KAA+ L + G +RVVS
Sbjct: 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVS 34
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used to
define the set of sequences to include in this model.
This pair of genes is not consistantly observed in
proximity to any electron acceptor genes, but is found
next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM
15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and a
variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to have
a high specificity towards 2-oxoglutarate and is one of
the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 30.2 bits (69), Expect = 5.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641
DV++IG GS +A E LR G V ++
Sbjct: 463 DADVLIIGWGSTYGAIREAVERLRAEGIKVALLHL 497
>gnl|CDD|218536 pfam05282, AAR2, AAR2 protein. This family consists of several
eukaryotic AAR2-like proteins. The yeast protein AAR2 is
involved in splicing pre-mRNA of the a1 cistron and
other genes that are important for cell growth.
Length = 339
Score = 29.6 bits (67), Expect = 5.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 244 HISIDGDTEIAFTENVDKRFEGL-----GWHVIWVKNGNTGYDDIR 284
+ ID +FT V F+G+ G H + + G +R
Sbjct: 14 LVGIDL---SSFT--VGPNFKGIKMIPPGVHFLHYSSAKNGESSLR 54
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 30.1 bits (68), Expect = 6.1
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 48 TSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAV 100
+ LRTP +S A P+ L DAALV + + F+ +
Sbjct: 210 DAELLLRTPKRSVYVSPFAAVWPVDYWHTGELVFGCDAALVRARIG-VGFMGL 261
>gnl|CDD|181999 PRK09622, porA, pyruvate flavodoxin oxidoreductase subunit alpha;
Reviewed.
Length = 407
Score = 29.3 bits (66), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641
+V ++ G+ E A AA+E+RK G V +
Sbjct: 269 EVAIVALGTTYESAIVAAKEMRKEGIKAGVATI 301
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 29.1 bits (65), Expect = 8.0
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSAR 666
DV+++G G I +AAE K GK V ++ E +D +L V+
Sbjct: 136 PKDVVVVGAG---PIGLEAAEAAAKRGKKVTLI---------EAADRLGGQLLDPEVAEE 183
Query: 667 VSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
+ E +G E ++G+K + I A+ VI E
Sbjct: 184 L-AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic
binding fold superfamily. Type 1 periplasmic binding
fold superfamily. This model and hierarchy represent the
ligand binding domains of the LacI family of
transcriptional regulators, periplasmic binding proteins
of the ABC-type transport systems, the family C
G-protein couples receptors (GPCRs), membrane bound
guanylyl cyclases including the family of natriuretic
peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domains of the ionotropic glutamate receptors (iGluRs).
In LacI-like transcriptional regulator and the bacterial
periplasmic binding proteins the ligands are
monosaccharides including lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars,
with a few exceptions. Periplasmic sugar binding
proteins are one of the components of ABC transporters
and are involved in the active transport of
water-soluble ligands. The LacI family of proteins
consists of transcriptional regulators related to the
lac repressor. In this case, the sugar binding domain
binds a sugar which changes the DNA binding activity of
the repressor domain. The periplasmic binding proteins
are the primary receptors for chemotaxis and transport
of many sugar based solutes. The core structures of
periplasmic binding proteins are classified into two
types, and they differ in number and order of beta
strands: type 1 has six beta strands, while type 2 has
five beta strands per sub-domain. These two structural
folds are thought to be distantly related via a common
ancestor. Notably, while the N-terminal LIVBP-like
domain of iGluRs belongs to the type 1
periplasmic-binding fold protein superfamily, the
glutamate-binding domain of the iGluR is structurally
similar to the type 2 periplasmic-binding fold.
Length = 269
Score = 29.1 bits (65), Expect = 8.8
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 603 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645
+ KPD I A KAA E + ++ F
Sbjct: 178 KAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGSP 220
>gnl|CDD|182093 PRK09819, PRK09819, alpha-mannosidase; Provisional.
Length = 875
Score = 29.2 bits (66), Expect = 9.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 691 DRFGASAPAGKIYKEFGIT 709
D FG S +IY FGIT
Sbjct: 125 DSFGQSGQMPQIYNGFGIT 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,907,000
Number of extensions: 3703760
Number of successful extensions: 3745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3666
Number of HSP's successfully gapped: 93
Length of query: 721
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 617
Effective length of database: 6,324,786
Effective search space: 3902392962
Effective search space used: 3902392962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.8 bits)