RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004970
(721 letters)
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 1230 bits (3186), Expect = 0.0
Identities = 559/674 (82%), Positives = 598/674 (88%), Gaps = 28/674 (4%)
Query: 74 AAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYN
Sbjct: 1 GAVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYN 60
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS-------------------------- 166
PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS
Sbjct: 61 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETP 120
Query: 167 -VQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 225
V+VTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA
Sbjct: 121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEAC 180
Query: 226 SLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRA 285
SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRA
Sbjct: 181 SLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRA 240
Query: 286 AIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHV 345
AIKEAKAVTDKPTLI+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F V
Sbjct: 241 AIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFV 300
Query: 346 PEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT 405
PEDVK HWSRH EGA LEA+WNAKFAEYEKKY ++AA KSI +G+LP GW ALP YT
Sbjct: 301 PEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYT 360
Query: 406 PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG 465
PESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFG
Sbjct: 361 PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFG 420
Query: 466 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 525
VREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLG
Sbjct: 421 VREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLG 480
Query: 526 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 585
EDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL
Sbjct: 481 EDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLP 540
Query: 586 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 541 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 600
Query: 646 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 705
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 601 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 660
Query: 706 FGITAEAVITAAKE 719
+GIT E++I AAK
Sbjct: 661 YGITVESIIAAAKS 674
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 1181 bits (3058), Expect = 0.0
Identities = 340/692 (49%), Positives = 451/692 (65%), Gaps = 35/692 (5%)
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
+ + + + + ++ + S+NTIR L++DA+EKANSGHPG+PMG AP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAP 61
Query: 120 MGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-------------S 166
M + L+ + M++NP NP WFNRDRFVLSAGHG ML Y+LLHL+GYD S
Sbjct: 62 MAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQWGS 121
Query: 167 -------------VQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 213
V TTGPLGQG+A AVG+A+AE+HLAA+YN+ IVDHYTY I GD
Sbjct: 122 KTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGD 181
Query: 214 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 273
G MEG++ EASSLA HL LG+L+ YD N IS+DGD +F+E+V+ R++ GW VI V
Sbjct: 182 GDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRV 241
Query: 274 KNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATR 333
++GN + I AI+EAKA +PTLI V TTIGFGSPNK+ + HGS LG +E T+
Sbjct: 242 EDGND-IEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTK 300
Query: 334 KNLGWPYE-PFHVPEDVKKHWSRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSG 391
+ W E FHV E+V +++ + V + G T +AEWN EY + YPE A E ++ +G
Sbjct: 301 EAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNG 360
Query: 392 QLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD 451
LP GWE+ LPTY S A ATRN S +NA+A+++P GGSADLA SN T + D
Sbjct: 361 LLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKD 419
Query: 452 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA 511
F +D +N+ +GVRE MGA NGIALH GL Y TFFVF+DY+R AIR++AL +
Sbjct: 420 FTRDDYSGKNIWYGVREFAMGAAMNGIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQL 478
Query: 512 GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRP 571
V YV THDSI +GEDGPTH+PIE LA+ RAMPN+ ++RPADGNE+ A+++A+ + +P
Sbjct: 479 PVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKP 538
Query: 572 SILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEE 628
+ L L+RQ LP L G + + V KGAY++S S DVIL+ TGSE+ +A +A +
Sbjct: 539 TALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSA-SKKETADVILLATGSEVSLAVEAQKA 597
Query: 629 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 688
L G VVS S + F+ Q+ YKESVLP AV+ R +IE G+TFGW + VG +G +
Sbjct: 598 LAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVL 657
Query: 689 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
GID FGASAP KI +E+G T E V+ KE+
Sbjct: 658 GIDTFGASAPGEKIMEEYGFTVENVVRKVKEM 689
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 1169 bits (3026), Expect = 0.0
Identities = 292/692 (42%), Positives = 393/692 (56%), Gaps = 46/692 (6%)
Query: 73 AAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
+A + +V+TIR LA DAV+K +GHPG M AP+ + L+ MR++
Sbjct: 8 SALTRPRHPDYWTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHD 67
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD-------------S------------- 166
P + +W RDRFVLSAGH + Y L+L G+ S
Sbjct: 68 PSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSDIESLRTWGSKTPGHPEFRHTPG 127
Query: 167 VQVTTGPLGQGMANAVGLALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIANE 223
V++TTGPLGQG+A+AVG+A+A ++ ++ +P DHY YVI DG EG+ +E
Sbjct: 128 VEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSE 187
Query: 224 ASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDI 283
ASSLA LG LI FYD N ISI+ DT IA E+ R+ GWHV V+ G I
Sbjct: 188 ASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENV-VGI 246
Query: 284 RAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-P 342
AI A+AVTD+P+ I + T IG+ +PN ++ HG+ALG EV A +K +G+ +
Sbjct: 247 EEAIANAQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKT 306
Query: 343 FHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALP 402
F V EDV H VA G W +F + ++ PE A + + +LP GW+ LP
Sbjct: 307 FQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLP 366
Query: 403 TYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--- 459
+ P S A ATR S L+AL LP L GGSADLA SN T +K F +
Sbjct: 367 HWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEY 426
Query: 460 ------RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 513
R + FGVREH MGAI +GI LH Y TF F+DYMR A+R++AL +
Sbjct: 427 TAHWYGRTLHFGVREHAMGAILSGIVLHG-PTRAYGGTFLQFSDYMRPAVRLAALMDIDT 485
Query: 514 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKRP 571
IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++ +A N P
Sbjct: 486 IYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGP 545
Query: 572 SILALSRQKLPHLAGTSIDGVEKGAYIISDNS---SGNKPDVILIGTGSELEIAAKAAEE 628
L L+RQ +P L GT +GV +G Y++SD G +PDVILI TGSE+++A A
Sbjct: 546 VGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTL 605
Query: 629 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 688
L RVVS E F+ Q Y+++VLP VSARV++EAG W ++VG G+ +
Sbjct: 606 LADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIV 665
Query: 689 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
I+ +G SA +++E+G TAEAV AA+
Sbjct: 666 SIEHYGESADHKTLFREYGFTAEAVAAAAERA 697
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 1166 bits (3020), Expect = 0.0
Identities = 328/671 (48%), Positives = 426/671 (63%), Gaps = 41/671 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
+ + + +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NR
Sbjct: 2 TQFTDIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINR 60
Query: 142 DRFVLSAGHGCMLQYALLHLAGYD-------------S------------VQVTTGPLGQ 176
DRFVLS GH L Y++LHL GYD S V+VTTGPLGQ
Sbjct: 61 DRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQ 120
Query: 177 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 236
G++NAVG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG L
Sbjct: 121 GISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNL 180
Query: 237 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDK 296
IA YDDN I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DK
Sbjct: 181 IAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDK 240
Query: 297 PTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSR 355
PTLI++TTTIG+GS + A S+SVHG+ L A +V + G+ + F VP++V H+ +
Sbjct: 241 PTLIKMTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQK 299
Query: 356 HVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATR 414
+ + G +WN F+EY+KK+PE AE SGQLPA WE LPTYT + A ATR
Sbjct: 300 TILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATR 359
Query: 415 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVREH 469
LS+T L + LP L+GGSADL SN+T K DFQ + R +R+G+REH
Sbjct: 360 KLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREH 419
Query: 470 GMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP 529
MGAI NGI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGP
Sbjct: 420 AMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGP 479
Query: 530 THQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI 589
THQPIE LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI
Sbjct: 480 THQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSI 539
Query: 590 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDE 649
+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS + FD+
Sbjct: 540 ESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDK 596
Query: 650 QSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 709
Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T
Sbjct: 597 QPLEYRLSVLPDNV-PIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFT 652
Query: 710 AEAVITAAKEV 720
E V A++
Sbjct: 653 PEGVAERAQKT 663
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 1164 bits (3014), Expect = 0.0
Identities = 314/664 (47%), Positives = 416/664 (62%), Gaps = 38/664 (5%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
++ N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 149 GHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAV 182
GHG ML Y+LLHL GYD V+ TTGPLGQG+ANAV
Sbjct: 65 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAV 124
Query: 183 GLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDD 242
G+A+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDD
Sbjct: 125 GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDD 184
Query: 243 NHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
N ISIDG E FT++ RFE GWHVI +G+ I+ A++EA+AVTDKP+L+
Sbjct: 185 NGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHD-AASIKRAVEEARAVTDKPSLLMC 243
Query: 303 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 362
T IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G
Sbjct: 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQA 302
Query: 363 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRNLSQ 418
E+ WN KFA Y K YP+EAAEF G++P+ ++ + + A A+R SQ
Sbjct: 303 KESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQ 362
Query: 419 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 478
+ A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI
Sbjct: 363 NAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINED-AAGNYIHYGVREFGMTAIANGI 421
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538
+LH G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +A
Sbjct: 422 SLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480
Query: 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGA 596
S R PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G
Sbjct: 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGG 540
Query: 597 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 656
Y++ D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+E
Sbjct: 541 YVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 598
Query: 657 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 716
SVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+
Sbjct: 599 SVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAK 658
Query: 717 AKEV 720
AKE+
Sbjct: 659 AKEL 662
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 1158 bits (2998), Expect = 0.0
Identities = 333/707 (47%), Positives = 421/707 (59%), Gaps = 45/707 (6%)
Query: 53 LRTPTSRRRLSTSQASLPIRAAAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHP 111
+ T ++ + S +P + L+ T++ A N IR LA+DAV++ANSGHP
Sbjct: 9 MGTLEAQTQGPGSMPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHP 68
Query: 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD------ 165
G+PMG A +G L+ +++NP NP+W +RDRFVLS GHG ML Y+LLHL GYD
Sbjct: 69 GMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEEL 128
Query: 166 --------------------SVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 205
V+ TTGPLGQG+ANAVG+AL E LAA +N+ D +IVDH
Sbjct: 129 KNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDH 188
Query: 206 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEG 265
+TYV LGDGC MEGI++EA SLAG L L KLIA YDDN ISIDGD F ++ KRFE
Sbjct: 189 HTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEA 248
Query: 266 LGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALG 325
GW+VI NG+ D I AAI +AK +DKP+LI T IG G+ KA + VHG+ LG
Sbjct: 249 YGWNVIPNVNGHD-VDAIDAAIAKAKR-SDKPSLICCKTRIGNGAATKAGGHDVHGAPLG 306
Query: 326 AKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEF 385
A E+ TR+ LGW + PF +P++V W G E +WNA FA+Y KYP EAAEF
Sbjct: 307 ADEIAKTREALGWTWAPFVIPQEVYAAW-DAKEAGKRSEDDWNAAFAQYRAKYPAEAAEF 365
Query: 386 KSISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASS 441
+ +G LPA W ATR SQ + LA LP LLGGSADL S
Sbjct: 366 ERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGS 425
Query: 442 NMTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFT 496
N+T K + + ++ +GVRE GM A NG+ LH G P+ TF F+
Sbjct: 426 NLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHG-GYKPFGGTFLTFS 484
Query: 497 DYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 556
DY R A+R++AL + I+V THDSIGLGEDGPTHQ +EH+AS R +PN+ + RPAD E
Sbjct: 485 DYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVE 544
Query: 557 TAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISD-NSSGNKPDVILI 613
TA A+ AV + PS L SRQ L A T + VEKG Y++ D + +ILI
Sbjct: 545 TAVAWTYAV-AHQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKIILI 603
Query: 614 GTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS 673
TGSE+E+A KA E L + G A RVVS S ++FD Q Y+E VLP V RV+IEAG
Sbjct: 604 ATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGV-RRVAIEAGV 662
Query: 674 TFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 720
T W K VG +G +GID FG SAPAG ++K FG T E VI AK V
Sbjct: 663 TDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAV 709
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 1153 bits (2986), Expect = 0.0
Identities = 315/662 (47%), Positives = 419/662 (63%), Gaps = 42/662 (6%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
+EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV+S
Sbjct: 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMS 65
Query: 148 AGHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANA 181
GHGC LQYALLH+AGY+ V+VTTGPLGQG+ANA
Sbjct: 66 NGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANA 125
Query: 182 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 241
VGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI YD
Sbjct: 126 VGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYD 185
Query: 242 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIR 301
N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP +I
Sbjct: 186 SNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIV 245
Query: 302 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEG 360
TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+ +
Sbjct: 246 QTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKC 304
Query: 361 ATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTC 420
+ + W A+Y +P E A F + G+LP+GWE LPT S A ATR S+ C
Sbjct: 305 SAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASENC 361
Query: 421 LNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTPEERNVRFGVREHGMGAICNGI 478
L L +P L+GGSADL SN+T DF + E R +RFGVREH M AI NG+
Sbjct: 362 LAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGL 421
Query: 479 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 538
H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E +A
Sbjct: 422 DAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVA 480
Query: 539 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 598
+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV GAY
Sbjct: 481 ALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAYS 540
Query: 599 ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESV 658
+ D ++++ +GSE+ +A AA+ L + VRVVS ELFD Q D Y+++V
Sbjct: 541 VVDVP---DLQLVIVASGSEVSLAVDAAKALSGELR-VRVVSMPCQELFDAQPDTYRQAV 596
Query: 659 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 718
LPA V VS+EA +FGWEK +G+ FGASAPAG +YK+FGIT E V+ +
Sbjct: 597 LPAGV-PVVSVEAYVSFGWEKYS---HAHVGMSGFGASAPAGVLYKKFGITVEEVVRTGR 652
Query: 719 EV 720
E+
Sbjct: 653 EL 654
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 1148 bits (2972), Expect = 0.0
Identities = 321/665 (48%), Positives = 418/665 (62%), Gaps = 42/665 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
L SVN IRFLA+DAVEKA SGHPG+PMG AP+ ++L+ EVMR+NP +P W +R
Sbjct: 2 KETRDLETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDR 61
Query: 142 DRFVLSAGHGCMLQYALLHLAGYD-------------S-------------VQVTTGPLG 175
DRFVLSAGHG ML YA+LHL GYD S V+VTTGPLG
Sbjct: 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLG 121
Query: 176 QGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 235
QG++ AVGLALAE+ LAA +N+P + +VDHYTYV+ DG MEG++ EA+SLAGH GL K
Sbjct: 122 QGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSK 181
Query: 236 LIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTD 295
LI F+DDN ISIDG T++AFTE+V R+ GW + V++ N + +R AIK AK +
Sbjct: 182 LIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAIKLAKL-DE 239
Query: 296 KPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR 355
+PTLI V + IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H
Sbjct: 240 RPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHM-D 297
Query: 356 HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRN 415
+G + W Y + YP+ E G+LP E+ P++ ATR
Sbjct: 298 MREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEE-PPSF---DKPIATRA 353
Query: 416 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 475
S LN LA LP LLGGSADL SN T + DF + P R + FGVREH MGAI
Sbjct: 354 ASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAIL 413
Query: 476 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535
NG+ LH G Y TF VF+DYMR AIR++AL ++V THDSI LGEDGPTHQP+E
Sbjct: 414 NGLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVE 472
Query: 536 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 595
HL S RAMPN+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G
Sbjct: 473 HLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRG 532
Query: 596 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 655
Y++ D +P +L+ TGSE+ +A +A LR+ G VRVVS S+ELF Q +AY+
Sbjct: 533 GYVLEDVE---EPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYR 589
Query: 656 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 715
+ VLP + V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V
Sbjct: 590 KEVLPPGL-PVVAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAE 645
Query: 716 AAKEV 720
A +
Sbjct: 646 AFLSL 650
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 1146 bits (2968), Expect = 0.0
Identities = 294/668 (44%), Positives = 396/668 (59%), Gaps = 42/668 (6%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
++ + N IRFL++DA KA SGHPG+PMG A + +L+ + +++NP NP+W NRDRFV
Sbjct: 4 SIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYD--------------------------SVQVTTGPLGQGMA 179
LS GHG ML Y+LLHL GYD V+ TTGPLGQG+A
Sbjct: 64 LSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVA 123
Query: 180 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 239
NAVG+AL EK L+ RYN PD +++DH+TYV LGDGC MEG+++EA SLAG LGL KL+AF
Sbjct: 124 NAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAF 183
Query: 240 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299
+DDN+ISIDGDT+ F++N +RF GWHVI +G+ + I AI EA + KPTL
Sbjct: 184 WDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPTL 242
Query: 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 359
I T IGFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +
Sbjct: 243 ICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYW-DAREK 301
Query: 360 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRN 415
G LEA W + + K + EF+ + S +LP G E A+ Y + ATR
Sbjct: 302 GQALEANWQGQRNLF--KDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRK 359
Query: 416 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 475
SQ L L K +P + GGSADL SN T + +GVRE GM AI
Sbjct: 360 ASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIM 419
Query: 476 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 535
NG++L+ G+ PY TF VF+DY R AIR+SAL + V++VM+HDSIGLGEDGPTHQPIE
Sbjct: 420 NGLSLYG-GIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478
Query: 536 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVE 593
H+ S R +PN+ + RPAD ET A+K AV ++ PS++ L+RQ L + T + +
Sbjct: 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIA 538
Query: 594 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDA 653
+G Y++ DN + ++ TGSE+E+A K A E K G + V S E+F Q+
Sbjct: 539 RGGYLVKDNP---DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHE 595
Query: 654 YKESVLPAAVSARVSIEAGSTFGWEKIVGSK-GKAIGIDRFGASAPAGKIYKEFGITAEA 712
YK++V+ + V +E W K + G+ GI FG SAPA ++K FG T E
Sbjct: 596 YKKTVIKDDI-PAVFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPAEDLFKRFGFTVEN 654
Query: 713 VITAAKEV 720
+ +
Sbjct: 655 ISNIVAKY 662
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 1084 bits (2805), Expect = 0.0
Identities = 256/662 (38%), Positives = 361/662 (54%), Gaps = 58/662 (8%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
+ ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR
Sbjct: 2 NIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY-HLKHNPKNPTWLNRDR 60
Query: 144 FVLSAGHGCMLQYALLHLAGYD-------------------------SVQVTTGPLGQGM 178
V S GH L Y+ LHL+GYD V++ TGPLGQG+
Sbjct: 61 LVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGV 120
Query: 179 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 238
ANAVG A+A K ++DH Y + GDG EGI+ EA SLAG L I
Sbjct: 121 ANAVGFAMAAKKAQNLLGSD---LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFIL 177
Query: 239 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPT 298
YD N+ISI+GD +AF ENV RFE G+ V+ + NG+ Y++I A+++AK + KP
Sbjct: 178 IYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSI-NGHD-YEEINKALEQAKK-STKPC 234
Query: 299 LIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHV 357
LI TTI G+ S+ HG+ LG + + ++ G+ FH+P+ K + V
Sbjct: 235 LIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAV 294
Query: 358 AEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLS 417
G EA+W K + K E + P + A P + + ATR+ +
Sbjct: 295 ELGDLEEAKWKDKLEKSAK--KELLERLLN------PDFNKIAYPDFKGKD--LATRDSN 344
Query: 418 QTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNG 477
LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH M AI N
Sbjct: 345 GEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDF----VEGKNIHFGIREHAMAAINNA 400
Query: 478 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 537
A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L
Sbjct: 401 FARYG-IFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQL 459
Query: 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAY 597
++FRAMPN L RPADG E A+++A+ N PS LSRQKL L V+ GAY
Sbjct: 460 STFRAMPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAY 518
Query: 598 IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKES 657
++ ++ + L+ +GSE+ + ++A EL K G A VVS +ELF++Q AY+E
Sbjct: 519 LLKES---KEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQER 575
Query: 658 VLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 717
+L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 576 LLKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVNFI 629
Query: 718 KE 719
Sbjct: 630 LS 631
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 816 bits (2111), Expect = 0.0
Identities = 162/673 (24%), Positives = 265/673 (39%), Gaps = 91/673 (13%)
Query: 77 ETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNP 136
+ AL + + N +R ++ A A SGHP A + +L+ MRY ++P
Sbjct: 3 HKPDQQKLQAL-KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDP 61
Query: 137 YWFNRDRFVLSAGHGCMLQYALLHLAGYDS------------------------VQVTTG 172
+ DRFVLS GH + YA+ AG+ + V TG
Sbjct: 62 RNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATG 121
Query: 173 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 232
LGQG+ A G+A K+ + + Y +LGDG EG EA + A
Sbjct: 122 SLGQGLGAACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYK 172
Query: 233 LGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 291
L L+A D N + + + KR E GWH I V +G++ +++ A +AK
Sbjct: 173 LDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-VEELCKAFGQAK 230
Query: 292 AVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKK 351
+PT I T G G + S HG L + + +
Sbjct: 231 ---HQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYS------------- 274
Query: 352 HWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE 411
+ +K + P+E A I++ ++P+ LP+Y
Sbjct: 275 --------------QIQSK-KKILATPPQEDAPSVDIANIRMPS-----LPSYKVGDKI- 313
Query: 412 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 471
ATR L L ++ D +S + F+K+ P+ R + + E M
Sbjct: 314 ATRKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIFKKEHPD-RFIECYIAEQNM 367
Query: 472 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH 531
+I G A + +P+C+TF F IR++A+ E+ + +H + +GEDGP+
Sbjct: 368 VSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ 426
Query: 532 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDG 591
+E LA FR++P + P+DG T A ++A AN K + SR + + + D
Sbjct: 427 MALEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDF 485
Query: 592 VEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS-----WEL 646
A ++ V +IG G L A AAE L+K +RV+ + +L
Sbjct: 486 QVGQAKVVLK---SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKL 542
Query: 647 FDEQSDAYKESVLPA-AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 705
+ + A K +L I + G + ++R S ++ K
Sbjct: 543 ILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKM 602
Query: 706 FGITAEAVITAAK 718
FGI +A+ A +
Sbjct: 603 FGIDRDAIAQAVR 615
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 299 bits (766), Expect = 4e-90
Identities = 106/799 (13%), Positives = 204/799 (25%), Gaps = 150/799 (18%)
Query: 46 KSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAAL--------VEKSVNTIRF 97
+ P+ A+E ++ + +
Sbjct: 12 SGLVPRGSHMTNPVIGTPWQKLDRPVSEEAIEGMDKYWRVTNYMSIGQIYLRSNPLMKEP 71
Query: 98 LAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYA 157
D V+ GH G G L + R + F++ GHG +
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLN----FLLAHINRLIADHQ---QNTVFIMGPGHGGPAGTS 124
Query: 158 LLHLAGYDS------------------------------------VQVTTGPLGQGMANA 181
++ G + G LG +++A
Sbjct: 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHA 184
Query: 182 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN---EASSLAGHLGLGKLIA 238
G + + I+GDG G +++ L G ++
Sbjct: 185 YGAVMNNP--------------SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLP 230
Query: 239 FYDDNHISIDGDTEIAF--TENVDKRFEGLGWHVIWVKNGNTGYD--------------- 281
N I T +A E + F G+G+H G D
Sbjct: 231 ILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETI 290
Query: 282 -----DIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNK------ANSYSVHGSALGAKEVD 330
DI+AA + ++ T G+ P S+ H L +
Sbjct: 291 FDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDT 350
Query: 331 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 390
+ + + PE++ + + + A
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGA-----NPNANGGVIRED 405
Query: 391 GQLPAGWEKALPTYTPESP----AEATRNLSQTCLNALAKTLPGLLGGSADLASSN---- 442
+LP + + EA R L C + + D +SN
Sbjct: 406 LKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNA 465
Query: 443 -MTLLK---MFGDFQKDTPEERNVRFGVREHGMGAICNGIALH-----SPGLIPYCATFF 493
+ G E V V E C G G+ +F
Sbjct: 466 TYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFV 525
Query: 494 VFTDYM--------RAAIRISALCE--AGVIYVMTHDSIGLGEDGPTHQP---IEHLASF 540
D M A +R + + V +++ +G +HQ L +
Sbjct: 526 HVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585
Query: 541 RAMPNILM--LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGA 596
+ + D N + + + + + +Q P + +E GA
Sbjct: 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGA 645
Query: 597 YII---SDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDEQ-- 650
S+ + ++ V+L G A++ L K G +VV+ V +
Sbjct: 646 AEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSREN 705
Query: 651 -----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA----IGIDRFGASAPAGK 701
+D + A + + + I +G G++
Sbjct: 706 NDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFD 765
Query: 702 IYKEFGITAEAVITAAKEV 720
+ + + A+ AA ++
Sbjct: 766 MVRVNDMDRYALQAAALKL 784
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.2 bits (179), Expect = 2e-13
Identities = 119/701 (16%), Positives = 201/701 (28%), Gaps = 238/701 (33%)
Query: 2 ASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRR 61
S+ TLS HG S EH L + T S S L+ + L PT
Sbjct: 4 YSTRPLTLS----------HG---SLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFA 49
Query: 62 LS---TSQASLPIR-----AAAVETLETSTDAALVEKSVNTI--RFLAVDAVEKANSGHP 111
T+ A L + ++ VE + ++ + +L + +
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------- 101
Query: 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVTT 171
H L + +N + + ++ Y + +
Sbjct: 102 ----------HAL---AAKLLQENDTTLVKTKELIKN-------Y-------ITARIMAK 134
Query: 172 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL 231
P + +A+ A+ E + A+ I G G Q G ++
Sbjct: 135 RPFDKKSNSALFRAVGEGN--AQ------------LVAIFG-G-Q--GNTDD-------- 168
Query: 232 GLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 291
+L Y H+ + + + L + + T +I ++
Sbjct: 169 YFEELRDLYQTYHVLVG-----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 292 AVTDKPTLIRVTTT---IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPED 348
DK L+ + + IG Y V T K LG+ P +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQ---LAHYVV------------TAKLLGFT------PGE 262
Query: 349 VKKH--WSRHVAEG---ATLEAE---WNAKFAEYEKKYPE----------EAAEFKSISS 390
++ + + ++G A AE W + F +K EA S+
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 391 GQLPAGWE--KALPTYTPESPAEATRNLSQTCL----NALAKTLPG-------------- 430
L E + +P SP + NL+Q + N LP
Sbjct: 322 SILEDSLENNEGVP-----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 431 --LLGGSADLASSNMTLLKMF---GDFQKDTP-EERNVRFGVREHGMGAICNGIAL---- 480
+ G L N+TL K G Q P ER ++F R L
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----------FLPVAS 425
Query: 481 --HSPGLIPYCATFFVFTDYMRAAIRISALCEAGV-IYVMTHDSIGLGEDGPTHQPIEHL 537
HS L+P A+ + D ++ + +A + + +Y T D G D
Sbjct: 426 PFHSHLLVP--ASDLINKDLVKNNVSFNA-KDIQIPVY-DTFD----GSD---------- 467
Query: 538 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL-ALSRQ-----KLPHLAGTSI-D 590
LR G+ + I+ + R T I D
Sbjct: 468 -----------LRVLSGSIS-------------ERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 591 ---GVEKG-AYIISDNSSGNKPDVILIGT---GSELEIAAK 624
G G + N G VI+ GT + + K
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 50.4 bits (120), Expect = 2e-06
Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 78/234 (33%)
Query: 56 PTSRRRLSTSQASLPIRAAAVE-TLETSTDAALVEKSVNTIRFLAVDAVEKANS---GHP 111
P + + IR ET D L + + F ++ E + S
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI----FKEIN--EHSTSYTFRSE 1722
Query: 112 -GL--------P----MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH--GCMLQY 156
GL P M A E ++ AGH G +Y
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAF------EDLKS------KGLIPADATFAGHSLG---EY 1767
Query: 157 -ALLHLAGY----DSVQVT---------------TGPLGQGMA----NAVGLALAE---K 189
AL LA V+V G GM V + ++ +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 190 HLAARYNKPDNEIV-------DHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 236
++ R K +V ++ YV GD + + + +++ + L K+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGD---LRAL-DTVTNVLNFIKLQKI 1877
Score = 42.7 bits (100), Expect = 5e-04
Identities = 78/398 (19%), Positives = 122/398 (30%), Gaps = 148/398 (37%)
Query: 392 QLPAGWEKALPTYT--------PESPAEATRNLSQTCLNALAKTLPGLLGGSAD---LAS 440
QL + K LP T P +PAE L + K L G + + +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAE---------L--VGKFL-GYVSSLVEPSKVGQ 79
Query: 441 SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMR 500
+ L +F+ E ++ H + A L T + +Y+
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDI------HALAA-----KLLQENDTTLVKTKELIKNYIT 128
Query: 501 AAIRI---------SAL---CEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNIL 547
A I SAL G ++ I G G+ G T E L
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVA---IFG-GQ-GNTDDYFEELRDL------- 176
Query: 548 MLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGV---EKGAYIIS--DN 602
+T Y V V ++ S + L L T++D +G I+ +N
Sbjct: 177 -------YQT---YHVLVG-----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 603 SSGNKPDVI----------LIGTGSEL------EIAAKAA----EELR---KG----GKA 635
S N PD LIG + + AK ELR KG +
Sbjct: 222 PS-NTPDKDYLLSIPISCPLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 636 VRVVSFV-----SWELFDEQS---------------DAYKESVLPAAVSARVSIEAGSTF 675
+ V + SWE F +AY + LP ++ S+E
Sbjct: 277 L-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-SLENN--- 331
Query: 676 GWEK-------IVGSKGKAIG--IDRFGASAPAGK-IY 703
E I + + +++ + PAGK +
Sbjct: 332 --EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 40.4 bits (94), Expect = 0.002
Identities = 53/310 (17%), Positives = 83/310 (26%), Gaps = 120/310 (38%)
Query: 326 AKEV----DA-TRKNLGWPYEPFHVPEDVK---KHWSRHV--AEGATLEAEWNA-KFAEY 374
A++V D + G F + + V + + H +G + ++A F
Sbjct: 1642 AQDVWNRADNHFKDTYG-----FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 375 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGG 434
+ FK I+ + +YT S LS T T P L
Sbjct: 1697 VDGKLKTEKIFKEIN---------EHSTSYTFRSEKGL---LSAT-----QFTQPALT-- 1737
Query: 435 SADLAS-SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF 493
L + LK G D A G HS G
Sbjct: 1738 ---LMEKAAFEDLKSKGLIPAD-----------------ATFAG---HSLG--------- 1765
Query: 494 VFTDYMRAAIRISAL-CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPA 552
+Y +AL A V+ IE L ++ R
Sbjct: 1766 ---EY-------AALASLADVM------------------SIESLVE------VVFYR-- 1789
Query: 553 DGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVIL 612
G A R ++A++ P S E Y++ + +
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGMIAIN----PGRVAASFS-QEALQYVV---------ERVG 1834
Query: 613 IGTGSELEIA 622
TG +EI
Sbjct: 1835 KRTGWLVEIV 1844
Score = 37.7 bits (87), Expect = 0.016
Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 52/150 (34%)
Query: 120 MGHILYD-------------------------EVMRYNPKNPYWFNRDRFVLSAGHGCML 154
MG LY +++ NP N G +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF------GGEKGKRI 1684
Query: 155 QYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVD-HYT------ 207
+ Y ++ T G+ + + E + + + +T
Sbjct: 1685 R------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 208 --YVILGDGCQM--EGIANEASSLAGH-LG 232
D + +G+ ++ AGH LG
Sbjct: 1739 MEKAAFED---LKSKGLIPADATFAGHSLG 1765
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 51.0 bits (123), Expect = 1e-06
Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)
Query: 523 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 581
G+ G DG THQ L+ R +P ++++ P+D NE PS + R
Sbjct: 422 GIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNA 481
Query: 582 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 640
+ T ++ + G + + ++ G+ + AAK AE L +V
Sbjct: 482 VGVELTPLEKLPIGKGIVKRRGE-----KLAILNFGTLMPEAAKVAESLN-----ATLVD 531
Query: 641 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 685
FV L E + +++ A V++E + G
Sbjct: 532 MRFVKPLDEALILEMAASHE---------ALVTVEENAIMGGAGSGVNEVLMAHRKPVPV 582
Query: 686 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 719
IG+ D F ++ E G+ A + K
Sbjct: 583 LNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKA 617
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 47.1 bits (113), Expect = 2e-05
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 523 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 581
G+ G DG TH + L+ R++P + + P D E G K A + P + R
Sbjct: 425 GIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNT 483
Query: 582 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 640
+ + ++ G + DV+++ G L+ A KAAE+L G VV+
Sbjct: 484 AQVPAGTWPDLKWGEWERLKGGD-----DVVILAGGKALDYALKAAEDLPGVG----VVN 534
Query: 641 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 685
FV E+ E + A +++E + G +
Sbjct: 535 ARFVKPLDEEMLREVGGRAR---------ALITVEDNTVVGGFGGAVLEALNSMNLHPTV 585
Query: 686 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 719
+ +GI D F A A ++ GI A A+ T E
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAE 620
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 5e-04
Identities = 62/407 (15%), Positives = 96/407 (23%), Gaps = 135/407 (33%)
Query: 6 SFTLS-QALL-TRGTS-------HHGFTQSSEHHRLALS---TLSLPSFSGLKSTSSSTL 53
+F LS + LL TR S +HH + L+ SL
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LL---------- 308
Query: 54 RTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI---RFLAVDAVEKA---- 106
+ L LP S A + + T + + D +
Sbjct: 309 ------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 107 -NSGHPGLPMGCAPMGHILYDE--VMRYNPKNP------YWFNRDRFV------------ 145
N P +D V + P WF+ +
Sbjct: 363 LNVLEPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 146 LSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKH--LAARYNKPDN--- 200
L ++ + Y ++V H + YN P
Sbjct: 416 LVEKQPKESTISIPSI--YLELKVKL------------ENEYALHRSIVDHYNIPKTFDS 461
Query: 201 -----EIVDHYTYVILG---DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE 252
+D Y Y +G + + F D
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-----------FLDFR--------- 501
Query: 253 IAFTENVDK-RFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA-VTDK-PTLIRVTTTIG-F 308
F E K R + W N + + +K K + D P R+ I F
Sbjct: 502 --FLEQ--KIRHDSTAW------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 309 GSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR 355
+ N +K D R L E E+ K R
Sbjct: 552 LPKIEENLIC-------SKYTDLLRIALMAEDEAIF--EEAHKQVQR 589
Score = 36.4 bits (83), Expect = 0.041
Identities = 66/461 (14%), Positives = 120/461 (26%), Gaps = 135/461 (29%)
Query: 279 GYDDIRAAIKEA-------KAVTDKPTLIRVTTTIG--FGSPNKAN-SYSVHGSALGAKE 328
Y DI + ++A K V D P I I S + + + + + L +E
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 329 -------VDATRKNLGWPYEPFHV----PEDVKKHWSRHVAEGATLEAEWNA--KFAEYE 375
+ R N + P P + + + + +N FA+Y
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------EQRDRLYNDNQVFAKYN 130
Query: 376 KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLG-G 434
+ + + +AL P +N+ + G+LG G
Sbjct: 131 VSRLQPYLKLR------------QALLELRPA------KNV----------LIDGVLGSG 162
Query: 435 ----SADLASSNMTLLKM-FGDF-----QKDTPEER-------NVRFGVREHGMGAICNG 477
+ D+ S KM F F ++PE + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 478 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV---------IYVMTHD-SI--GLG 525
I L + Y + + + A I + T + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 526 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 585
TH ++H + L P E L Q LP
Sbjct: 283 AATTTHISLDHHSM--------TLTPD---EVKSLL----LK-----YLDCRPQDLPREV 322
Query: 586 GTSIDGVEKGAYIISDNSSGNKPDVI-LIGTGSELEIAAKAAEELRK-GGKAVRVVSFVS 643
+ N P + +I + + + + + S
Sbjct: 323 -----------------LTTN-PRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 644 WELFD--EQSDAYKE-SVLPAAVSARVSIEAGSTFGWEKIV 681
+ + E + SV P SA + S W ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLI-WFDVI 400
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 24/50 (48%)
Query: 375 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPES-PAEATRNLSQTCLNA 423
EK+ K + + +L Y +S PA A + A
Sbjct: 18 EKQ------ALKKL---------QASLKLYADDSAPALA--------IKA 44
Score = 30.3 bits (67), Expect = 1.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 327 KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 364
K++ A+ K Y P +A AT+E
Sbjct: 23 KKLQASLK----LYADDSAPA---------LAIKATME 47
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 36.7 bits (85), Expect = 0.029
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 590 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSW-ELF 647
+G+ KG Y + G+K V L+G+GS L +AAE L K G V S S+ EL
Sbjct: 707 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 765
Query: 648 DEQSDAYKESVLPAAVSARVS 668
+ D + ++L + RV
Sbjct: 766 RDGQDCERWNMLHPLETPRVP 786
Score = 35.2 bits (81), Expect = 0.082
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 168 QVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 227
Q T +G G A+ A K+L R K + Y LGDG E + A ++
Sbjct: 188 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTS---KQTVYAFLGDGEMDEPESKGAITI 244
Query: 228 AGHLGLGKLIAFYDDNHISID----GDTEIAFTENVDKRFEGLGW---HVIWVKNGNTGY 280
A L L+ + N +D G+ +I ++ FEG GW V+W + +
Sbjct: 245 ATREKLDNLVFVINCNLQRLDGPVTGNGKII--NELEGIFEGAGWNVIKVMW----GSRW 298
Query: 281 DDIRAA 286
D++
Sbjct: 299 DELLRK 304
Score = 29.0 bits (65), Expect = 6.5
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 279 GYDD--IRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSY-SVHGS-ALGAKEVDATRK 334
G+D I AA K+A+ K T+I T G+G + A H + V R
Sbjct: 363 GHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422
Query: 335 NLGWPYE-------PFHVPEDVKKH 352
P P+ + +
Sbjct: 423 RFNVPVSDADIEKLPYITFPEGSEE 447
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 33.6 bits (77), Expect = 0.11
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 564 AVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSEL-EIA 622
AV +L + V++GA + + PDVI IG G +
Sbjct: 52 AVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA-FDDVPDNPDVIFIGGGLTAPGVF 110
Query: 623 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 656
A A + L GG+ V + V+ E K+
Sbjct: 111 AAAWKRLPVGGRL--VANAVTVESEQMLWALRKQ 142
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 34.1 bits (79), Expect = 0.19
Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 68/189 (35%)
Query: 137 YWFNRDR-FVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARY 195
+ S M G G+ A+ A+
Sbjct: 405 LKLTPSNRHITSNLFATM---------GV------------GIPGAIA---------AKL 434
Query: 196 NKPDNEIVDHYTYVILGDGC-QMEGIANEASSLA-------------GHLGLGKL--IAF 239
N P+ ++ + + GDG M + ++ G K
Sbjct: 435 NYPERQVFN-----LAGDGGASM--TMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDT 487
Query: 240 YDDNHISIDGDTEIAFTENVD--KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDK 296
++ I ++ ++D K +G+ V + + ++AKA+ +
Sbjct: 488 NQNDFIGVE-------FNDIDFSKIADGVHMQAFRVNK----IEQLPDVFEQAKAIAQHE 536
Query: 297 PTLIRVTTT 305
P LI T
Sbjct: 537 PVLIDAVIT 545
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 33.5 bits (75), Expect = 0.20
Identities = 12/76 (15%), Positives = 22/76 (28%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS++ F A ++ + G + ++ L + SRR
Sbjct: 7 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 66
Query: 61 RLSTSQASLPIRAAAV 76
T + V
Sbjct: 67 LALTVLIGAAAVGSKV 82
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 33.1 bits (76), Expect = 0.30
Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 230
+G L AVG A+A K D +I + GDG E + A + A
Sbjct: 180 SGNLATQFVQAVGWAMASAI------KGDTKIASAWI----GDGATAESDFHTALTFAHV 229
Query: 231 LGLGKLIAFYDDNH--ISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDI---RA 285
+I +N IS + R G G + V +GN D A
Sbjct: 230 YRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRV-DGN----DFVAVYA 283
Query: 286 AIKEA--KAVT-DKPTLI 300
A + A +A P+LI
Sbjct: 284 ASRWAAERARRGLGPSLI 301
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 30.4 bits (69), Expect = 0.73
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 607 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 641
+ D+ + GS+ E+L++ G + ++
Sbjct: 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYL 47
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA
polymerase beta motif; 2.00A {Escherichia coli} SCOP:
a.24.16.4 d.218.1.9
Length = 440
Score = 31.7 bits (72), Expect = 0.81
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 17/123 (13%)
Query: 150 HGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLAL--AEKHLAARYNKPDNEIVDHYT 207
M++ A + + L + A + P N +
Sbjct: 95 RRIMVRIAWAQTLALVTEESILQQLSYLAETLIVAARDWLYDACCREWGTPCNAQGEAQP 154
Query: 208 YVILGDGCQMEGIANEASSLAGH-LGLGK---LIAFYDDNHISIDGDTEIAFTENVDKRF 263
+ILG G L G L LI + ++ + G E+ + +
Sbjct: 155 LLILGMG-----------KLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMG 203
Query: 264 EGL 266
+ L
Sbjct: 204 QRL 206
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 30.6 bits (69), Expect = 2.0
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 606 NKPDVILIGTGSELEIAAKAAEELRKGG 633
+L EL + A+A E + G
Sbjct: 71 EGVTALLTLIDPELGLLAQATERFQAIG 98
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 30.6 bits (70), Expect = 2.0
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 360 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLS 417
+E K A ++I LP +A + EA R L+
Sbjct: 232 AGAVEPAAEQGLQAAIKAAERAGASVQAID---LPEAVHEAWRIHPIIQDFEAHRALA 286
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 30.4 bits (68), Expect = 2.3
Identities = 13/73 (17%), Positives = 23/73 (31%)
Query: 475 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 534
+G L + + V + A + E V ++ +G DG H
Sbjct: 327 LSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDER 386
Query: 535 EHLASFRAMPNIL 547
H + P +L
Sbjct: 387 PHPRLWGTFPRVL 399
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bordetella parapertussis 12822} PDB:
2k2e_A
Length = 150
Score = 29.3 bits (65), Expect = 2.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 606 NKPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFVS 643
N P+V+L+GTG + + L G V + +
Sbjct: 87 NAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 93
Score = 28.3 bits (62), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 365 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP 406
++W E ++KY E A E+++ + G+ P EK P +T
Sbjct: 48 SDWALLREEEKEKYAEMAREWRA-AQGKDPGPSEKQKPVFTS 88
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.1 bits (68), Expect = 2.6
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 558 AGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 617
G R+ + Q + T+ G + D+ DVI+ TG+
Sbjct: 203 YGLEVWMANRREPTEV----EQTVIEETKTNYYNSSNGYDKLKDSVGK--FDVIIDATGA 256
Query: 618 ELEIAAKAAEELRKGGKAV 636
++ I L + G
Sbjct: 257 DVNILGNVIPLLGRNGVLG 275
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 29.8 bits (67), Expect = 3.9
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 20/100 (20%)
Query: 348 DVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE 407
D K++ + + + L + F E K + +
Sbjct: 652 DTKEYIYKQIGD--KLNDVYYKMFKSLEAKADD----------------LTYFNDESHVD 693
Query: 408 SPAEATRNLSQTCLNALAKTLPGLLGGSAD--LASSNMTL 445
R L T L+ L+K + S +
Sbjct: 694 FDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSN 733
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 29.6 bits (67), Expect = 4.0
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 591 GVEKGAYIISDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDE 649
++ ++ N + I +E A + A + R G+AV + D
Sbjct: 319 RIDLLVEALNGEIISNGHEQTCILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDVDA 378
Query: 650 QSDAYKESV 658
S Y++ +
Sbjct: 379 MSSNYQDVI 387
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 639
D+ +I G+ + + KAA EL K G + VV
Sbjct: 203 DITIIAYGAMVHESLKAAAELEKEGISAEVV 233
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 639
D+ LI G+ + +AA EL K G + V+
Sbjct: 204 DLTLICYGTVMPEVLQAAAELAKAGVSAEVL 234
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 369 AKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPA 410
+++ + + + ++ +S G LPAG E P + E
Sbjct: 229 SQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 28.7 bits (65), Expect = 5.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 611 ILIG-TGSELEIAA-KAAE---ELRKGGKAVRVV 639
+LIG GS I++ + + K +RVV
Sbjct: 11 LLIGICGS---ISSVGISSYLLYFKSFFKEIRVV 41
>2wsc_G Photosystem I reaction center subunit V, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL;
3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G*
3lw5_G*
Length = 167
Score = 28.5 bits (62), Expect = 5.7
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSS-TLRTPTSR 59
MA++++ S L + Q +H + L SFSGL+ + + +S
Sbjct: 1 MAAATASLSSTLLAPCSSKQPQPQQQHQHQQ-----LKCKSFSGLRPLKLNISSNNSSSS 55
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAAL 87
+S+++ S+ RA +L S L
Sbjct: 56 LSMSSARRSMTCRAELSPSLVISLSTGL 83
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 28.8 bits (65), Expect = 6.0
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 281 DDIRAAIKEAKAVTDKP 297
+ + A I + +TD+P
Sbjct: 53 EALAAEIARCRELTDRP 69
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 29.0 bits (66), Expect = 6.0
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 65/185 (35%)
Query: 137 YWFNRDR-FVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARY 195
N R + S HG M M A+G
Sbjct: 391 LKMNGKRRLLGSFNHGSM---------------------ANAMPQALGAQAT-------- 421
Query: 196 NKPDNEIVDHYTYVILGDGC-QMEGIANEASSLA-------------GHLGLGKLIAFYD 241
+P+ ++V + GDG M + + S+ LG +
Sbjct: 422 -EPERQVVA-----MCGDGGFSM--LMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAG 473
Query: 242 DNHISIDGDTEIAFTENVD--KRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299
TE+ + + + E G I V+ ++ A++ A + D P L
Sbjct: 474 GYL---TDGTELH---DTNFARIAEACGITGIRVEK----ASEVDEALQRAFS-IDGPVL 522
Query: 300 IRVTT 304
+ V
Sbjct: 523 VDVVV 527
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 28.6 bits (64), Expect = 6.3
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 257 ENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAK 291
NV E LG+H NG I ++E K
Sbjct: 178 ANV-ATAERLGFHTYCPDNGENWIPAITRLLREQK 211
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 28.8 bits (65), Expect = 7.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 281 DDIRAAIKEAKAVTDKP 297
+ ++A I + K++TDKP
Sbjct: 49 EVVKANIDKIKSLTDKP 65
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 28.3 bits (64), Expect = 8.0
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 472 GAICN--------GIALHSPGLIPYCATFFVFTDYMRAA--------IRISALCEAGVIY 515
G+I G+ PG + Y A MR IR++++ +GV
Sbjct: 151 GSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVET 210
Query: 516 VMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPAD 553
M ++ + + + +L P D
Sbjct: 211 PMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPED 248
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 28.8 bits (65), Expect = 8.1
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSGL ++ +R + RL SL + A L T+ AL + +
Sbjct: 203 AFSGLL---TAAMRAYDAGERLEDICYSL--QEYAFSMLTEITERALAHTNKGEV 252
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 28.4 bits (64), Expect = 8.4
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 229
P+ + A G A++ K + GDG EG + A
Sbjct: 143 ASPIASHVPPAAGAAISMK-----LLRTGQ-----VAVCTFGDGATSEGDWYAGINFAA 191
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 28.4 bits (64), Expect = 8.5
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 171 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 229
+ PL + AVG A A K N +V Y G+G EG A+ + A
Sbjct: 161 SSPLATQIPQAVGAAYAAKR------ANANRVVICYF----GEGAASEGDAHAGFNFAA 209
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 28.3 bits (64), Expect = 8.6
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSG+ ++ L+ + + + S+ + A L + AL + I
Sbjct: 204 AFSGIL---TAALQYLKTGQAIEDISYSI--QETAFAMLVEVLERALYVSGKDEI 253
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 28.4 bits (64), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 281 DDIRAAIKEAKAVTDKP 297
DD+R AI E + TDKP
Sbjct: 63 DDLRKAISELRQKTDKP 79
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 28.3 bits (64), Expect = 9.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 276 GNTGYDDIRAAIKEAKAVTDKPTLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKN 335
+TG + AAI+ AK VT K + +GF A S+ HG A AT
Sbjct: 108 LSTGAESNEAAIRMAKLVTGKYEI------VGF-----AQSW--HGMTGAA--ASATYSA 152
Query: 336 LGWPYEPF-----HVP 346
P +P
Sbjct: 153 GRKGVGPAAVGSFAIP 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,284,131
Number of extensions: 724720
Number of successful extensions: 2170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 88
Length of query: 721
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 621
Effective length of database: 3,909,693
Effective search space: 2427919353
Effective search space used: 2427919353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)