RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004970
(721 letters)
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 330 bits (846), Expect = e-108
Identities = 273/333 (81%), Positives = 290/333 (87%), Gaps = 27/333 (8%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNPKNPYWFNRDRFVL
Sbjct: 6 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 65
Query: 147 SAGHGCMLQYALLHLAGYDS---------------------------VQVTTGPLGQGMA 179
SAGHGCMLQYALLHLAGYDS V+VTTGPLGQG+A
Sbjct: 66 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIA 125
Query: 180 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 239
NAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA SLAGH GLGKLIAF
Sbjct: 126 NAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAF 185
Query: 240 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299
YDDNHISIDGDTEIAFTE+V RFE LGWH IWVKNGNTGYDDIRAAIKEAKAVTDKPTL
Sbjct: 186 YDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 245
Query: 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 359
I+VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VPEDVK HWSRH E
Sbjct: 246 IKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPE 305
Query: 360 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 392
GA LEA+WNAKFAEYEKKY ++AA KSI +G+
Sbjct: 306 GAALEADWNAKFAEYEKKYADDAATLKSIITGE 338
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 312 bits (799), Expect = e-101
Identities = 170/331 (51%), Positives = 218/331 (65%), Gaps = 29/331 (8%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS
Sbjct: 7 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSN 65
Query: 149 GHGCMLQYALLHLAGYDS-------------------------VQVTTGPLGQGMANAVG 183
GH L Y++LHL GYD V+VTTGPLGQG++NAVG
Sbjct: 66 GHAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVG 125
Query: 184 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 243
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 126 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 185
Query: 244 HISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVT 303
I+IDG T I+F E+V KR+E GW V++V+NGN I AI +AK DKPTLI++T
Sbjct: 186 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 245
Query: 304 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 361
TTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 246 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 304
Query: 362 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 392
+WN F+EY+KK+PE AE SGQ
Sbjct: 305 EANNKWNKLFSEYQKKFPELGAELARRLSGQ 335
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 302 bits (773), Expect = 2e-97
Identities = 167/326 (51%), Positives = 211/326 (64%), Gaps = 28/326 (8%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYD--------------------------SVQVTTGPLGQGMANAVGLAL 186
ML Y+LLHL GYD V+ TTGPLGQG+ANAVG+A+
Sbjct: 68 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAI 127
Query: 187 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 246
AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN IS
Sbjct: 128 AEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS 187
Query: 247 IDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRVTTTI 306
IDG E FT++ RFE GWHV I+ A++EA+AVTDKP+L+ T I
Sbjct: 188 IDGHVEGWFTDDTAMRFEAYGWHV-IRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTII 246
Query: 307 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 366
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G E+
Sbjct: 247 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQAKESA 305
Query: 367 WNAKFAEYEKKYPEEAAEFKSISSGQ 392
WN KFA Y K YP+EAAEF G+
Sbjct: 306 WNEKFAAYAKAYPQEAAEFTRRMKGE 331
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 291 bits (746), Expect = 3e-93
Identities = 160/336 (47%), Positives = 209/336 (62%), Gaps = 28/336 (8%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 2 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 61
Query: 146 LSAGHGCMLQYALLHLAGY--------------------------DSVQVTTGPLGQGMA 179
+S GHGC LQYALLH+AGY V+VTTGPLGQG+A
Sbjct: 62 MSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIA 121
Query: 180 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 239
NAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 122 NAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVI 181
Query: 240 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 299
YD N+ISIDG T ++FTE +++ +G+HVI VKNG+T Y+ +R A+ EAKA KP +
Sbjct: 182 YDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKM 241
Query: 300 IRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVA 358
I TTTIGF +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 242 IVQTTTIGF-GSSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHID 300
Query: 359 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 394
+ + + W A+Y +P E A F + G+LP
Sbjct: 301 KCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELP 336
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize
(Zea mays) [TaxId: 4577]}
Length = 192
Score = 212 bits (540), Expect = 3e-65
Identities = 173/192 (90%), Positives = 178/192 (92%)
Query: 393 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 452
LP GW ALP YTPESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDF
Sbjct: 1 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDF 60
Query: 453 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 512
QKDT EERNVRFGVREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAG
Sbjct: 61 QKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAG 120
Query: 513 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 572
VIYVMTHDSIGLGEDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPS
Sbjct: 121 VIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 180
Query: 573 ILALSRQKLPHL 584
ILALSRQKLPHL
Sbjct: 181 ILALSRQKLPHL 192
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 197
Score = 190 bits (482), Expect = 7e-57
Identities = 106/197 (53%), Positives = 128/197 (64%), Gaps = 5/197 (2%)
Query: 393 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 452
LPA WE LPTYT + A ATR LS+T L + LP L+GGSADL SN+T K DF
Sbjct: 1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDF 60
Query: 453 Q-----KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA 507
Q R +R+G+REH MGAI NGI+ PY TF F Y A+R+SA
Sbjct: 61 QPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA 120
Query: 508 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 567
L VI+V THDSIG+GEDGPTHQPIE LA FR++PNI + RPADGNE + AYK ++ +
Sbjct: 121 LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES 180
Query: 568 RKRPSILALSRQKLPHL 584
+ PSI+ALSRQ LP L
Sbjct: 181 KHTPSIIALSRQNLPQL 197
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 189 bits (481), Expect = 4e-54
Identities = 58/385 (15%), Positives = 109/385 (28%), Gaps = 53/385 (13%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPY 137
+ L + + IR+ A+ V +A+ GH A + + ++ R
Sbjct: 19 NLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR----ARN 74
Query: 138 WFNRDRFVLSAGHGCMLQYALLHLAGYDS-------------------------VQVTTG 172
+ V GH YA L G + +
Sbjct: 75 EQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQF 134
Query: 173 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 232
P +G K L ++ + Y LGDG E + A ++A
Sbjct: 135 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREK 194
Query: 233 LGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEA 290
L L+ + N +DG ++ FEG GW+VI V G+ + +R
Sbjct: 195 LDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGK 254
Query: 291 KAVTDKPTLIRVTTTIGFGSP--------NKANSYSVHGSALGAKEVDATRKNLGWPYEP 342
T+ T K + + +++ A + P +
Sbjct: 255 LIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKI 314
Query: 343 FHVPEDVKKHWSRHVAE--------GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 394
+ + ++ + G AE + +K + + + +
Sbjct: 315 YAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVS 374
Query: 395 AGWEKALPTYTPESPAEATRNLSQT 419
+ LP T +E L
Sbjct: 375 DADIEKLPYITFPEGSEEHTYLHAQ 399
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 190
Score = 178 bits (453), Expect = 9e-53
Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 6/194 (3%)
Query: 395 AGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD--F 452
+GWE LPT S A ATR S+ CL L +P L+GGSADL SN+T F
Sbjct: 1 SGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDF 57
Query: 453 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 512
+ E R +RFGVREH M AI NG+ H G+IP+ TF F Y A+R++A+
Sbjct: 58 SSSSKEGRYIRFGVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHR 116
Query: 513 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 572
VIYV THDSIG+GEDGPTHQP+E +A+ RAMPN+ ++RP+D ET+GA+ VA+++ P+
Sbjct: 117 VIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPT 176
Query: 573 ILALSRQKLPHLAG 586
+L LSRQ +G
Sbjct: 177 VLCLSRQNTEPQSG 190
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 149 bits (376), Expect = 6e-42
Identities = 85/196 (43%), Positives = 114/196 (58%), Gaps = 6/196 (3%)
Query: 393 LPAGWEKALPTYTPESPAE----ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM 448
+P+ ++ + + A A+R SQ + A LP LGGSADLA SN+TL
Sbjct: 1 MPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG 60
Query: 449 FGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL 508
+D + +GVRE GM AI NGI+LH G +PY +TF +F +Y R A+R++AL
Sbjct: 61 SKAINEDAAG-NYIHYGVREFGMTAIANGISLH-GGFLPYTSTFLMFVEYARNAVRMAAL 118
Query: 509 CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 568
+ + V THDSIGLGEDGPTHQP+E +AS R PN+ RP D E+A A+K V +
Sbjct: 119 MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQ 178
Query: 569 KRPSILALSRQKLPHL 584
P+ L LSRQ L
Sbjct: 179 DGPTALILSRQNLAQQ 194
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 129 bits (326), Expect = 5e-36
Identities = 108/133 (81%), Positives = 123/133 (92%)
Query: 586 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 2 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 61
Query: 646 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 705
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 62 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 121
Query: 706 FGITAEAVITAAK 718
+GIT E++I AAK
Sbjct: 122 YGITVESIIAAAK 134
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 117 bits (294), Expect = 1e-31
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 588 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 647
+ + +G Y++ D +P++I I TGSE+E+A A E+L G RVVS S + F
Sbjct: 5 QLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAF 62
Query: 648 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 707
D+Q AY+ESVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG
Sbjct: 63 DKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFG 122
Query: 708 ITAEAVITAAKEV 720
T + V+ AKE+
Sbjct: 123 FTVDNVVAKAKEL 135
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 117 bits (295), Expect = 1e-31
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 587 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 646
+SI+GV GAY + D ++++ +GSE+ +A AA+ L + RVVS EL
Sbjct: 1 SSIEGVRHGAYSVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELRV-RVVSMPCQEL 56
Query: 647 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 706
FD Q D Y+++VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+F
Sbjct: 57 FDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASAPAGVLYKKF 112
Query: 707 GITAEAVITAAKEV 720
GIT E V+ +E+
Sbjct: 113 GITVEEVVRTGREL 126
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 116 bits (291), Expect = 6e-31
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 586 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645
G+SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS +
Sbjct: 2 GSSIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFF 58
Query: 646 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 705
FD+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K
Sbjct: 59 TFDKQPLEYRLSVLPDNVP-IMSVEVLATTCWGKYAH---QSFGIDRFGASGKAPEVFKF 114
Query: 706 FGITAEAVITAAKEV 720
FG T E V A++
Sbjct: 115 FGFTPEGVAERAQKT 129
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 92.9 bits (230), Expect = 3e-22
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 590 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE-ELRKGGKAVRVVSFVSWELFD 648
+G+ KG Y + G+K V L+G+GS L +AAE + G V S S+
Sbjct: 7 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 65
Query: 649 EQSDAYKES-----------------VLPAAVSARVSIEAGSTFG-WEKIVGSKGKAIGI 690
+ + A A + + +G
Sbjct: 66 RDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGT 125
Query: 691 DRFGASAPAGKIYKEFGITAEAVITAAKEV 720
D FG S + F + A V+ AA
Sbjct: 126 DGFGRSDSRENLRHHFEVDASYVVVAALGE 155
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 33.3 bits (75), Expect = 0.063
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 11/164 (6%)
Query: 142 DRFVLSAG-HGCMLQYALLHLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDN 200
+ G Q L ++ G +G + A G A+ R N
Sbjct: 20 TTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPE---RRNILMV 76
Query: 201 EIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE--N 258
+ + + G + +D + +I E N
Sbjct: 77 GDGSFQLTAQEVAQMVRLKLPVIIFLINNY-GYTIEVMIHDGPYNNIKNWDYAGLMEVFN 135
Query: 259 VDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIRV 302
+ ++ + K ++ AIK A A TD PTLI
Sbjct: 136 GNGGYDSGAAKGLKAKT----GGELAEAIKVALANTDGPTLIEC 175
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 32.6 bits (74), Expect = 0.067
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 608 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 667
+ +++ GS E + L G+ + ++ + F ++ + LPA+
Sbjct: 11 AERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFF---AALPASAKVIT 67
Query: 668 SIEAGSTFGW 677
++ G
Sbjct: 68 VLDRTKEPGA 77
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 30.6 bits (68), Expect = 0.48
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 258 NVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIRVTTT 305
+ K +G+ V + + ++AKA+ +P LI T
Sbjct: 136 DFSKIADGVHMQAFRVNK----IEQLPDVFEQAKAIAQHEPVLIDAVIT 180
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 29.7 bits (65), Expect = 1.2
Identities = 22/187 (11%), Positives = 39/187 (20%), Gaps = 16/187 (8%)
Query: 100 VDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALL 159
V ++ G + C P + +R + A +A +
Sbjct: 30 VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARV 89
Query: 160 HLAGYDSVQVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 219
T L + + H DG E
Sbjct: 90 KTLAAAQSADITAQLLSMGVQVI-------AGRGELIDSTPGLARHRIKATAADGSTSE- 141
Query: 220 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTG 279
+EA + G I + E + + + + T
Sbjct: 142 --HEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNY------LTVDRVSRTL 193
Query: 280 YDDIRAA 286
I AA
Sbjct: 194 ATGIYAA 200
Score = 27.0 bits (58), Expect = 7.5
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 639
++++G G AA A V V+
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVI 33
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 27.6 bits (61), Expect = 1.6
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 344 HVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 382
+PE K + + + + E+ A + + +P+
Sbjct: 51 ELPEKKKMKY---IQDFQREKQEFERNLARFREDHPDLI 86
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 28.2 bits (62), Expect = 2.1
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 610 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 669
++LIG G E+ +L G + +VS + + + ++
Sbjct: 16 ILLIGGG---EVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKD-----QPDYR 67
Query: 670 EAGSTFGWEKIVGSKGKAI 688
E F +K +
Sbjct: 68 EDAKRFINPNWDPTKNEIY 86
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 28.2 bits (62), Expect = 2.3
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 610 VILIGTGSELEIAA-KAAE---ELRKGGKAVRVVSFVSWELFDEQS 651
+++ GS I++ + + K +RVV + E
Sbjct: 9 LLIGICGS---ISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 51
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 27.3 bits (60), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 608 PDVILIGTGSELEIAA-KAAEELRKGGKAVRV 638
D+ L+ +G++ + AA AE LR V++
Sbjct: 4 VDIYLVASGADTQSAAMALAERLRDELPGVKL 35
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 28.7 bits (63), Expect = 2.4
Identities = 41/278 (14%), Positives = 70/278 (25%), Gaps = 56/278 (20%)
Query: 119 PMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVTTGPLGQGM 178
G + + G + + G +G +
Sbjct: 91 AHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFY--------GGNGIVGAQV 142
Query: 179 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 238
G+ALA K+ D + GDG +G EA ++A L I
Sbjct: 143 PLGAGIALACKYNGK----------DEVCLTLYGDGAANQGQIFEAYNMAALWKL-PCIF 191
Query: 239 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKA-VTDKP 297
++N + E A + D G + V + A P
Sbjct: 192 ICENNRYGMGTSVERA-AASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 250
Query: 298 TLIRVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH- 356
L+ + T G P + E++++ S+
Sbjct: 251 ILMELQTYRYHGHEMSD------------------------PGVSYRTREEIQEVRSKSD 286
Query: 357 ---------VAEGATLEAEWNAKFAEYEKKYPEEAAEF 385
V E E K+ E+AA+F
Sbjct: 287 PIMLLKDRMVNSNLASVEELKEIDVEVRKEI-EDAAQF 323
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 177
Score = 27.4 bits (60), Expect = 4.9
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 598 IISDNSSGNKPDVILIG--TGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 646
+ + ++ G TG+ E A + +++ + G ++L
Sbjct: 7 FVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDL 57
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 27.3 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 645
D+++IG GS AA A L K V V+
Sbjct: 5 DLVVIGAGSGGLEAAWNAATL--YKKRVAVIDVQMVH 39
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 27.2 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSW 644
D+++IG GS A A L K V V+
Sbjct: 5 DLVVIGAGSGGLEAGWNAASL--HKKRVAVIDLQKH 38
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 27.0 bits (58), Expect = 6.5
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 609 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVS 668
+LIG G+ A AA +R RV+ + ++ Y L +
Sbjct: 6 PFLLIGGGT---AAFAAARSIRARDPGARVL-----IVSEDPELPYMRPPLSKELWFSDD 57
Query: 669 IEAGSTFGWEKIVGS-KGKAIGIDRFGASAPAGKIYKEFGIT 709
T +++ G + F SA + G+
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVA 99
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.8 bits (58), Expect = 7.2
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 236 LIAFYDDNHISIDGDTEI 253
L++ Y++ + + GD +
Sbjct: 147 LLSTYENIIVKVQGDATV 164
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.7 bits (58), Expect = 9.2
Identities = 17/188 (9%), Positives = 46/188 (24%), Gaps = 24/188 (12%)
Query: 124 LYDEVMRYNPKNPYWFNRDRFVLSAGHGCM-LQYALLHLAGYDSVQVTTGPLGQGMANAV 182
+++++ + + D + G + Y QV G +G +
Sbjct: 10 MWNQLGNFLQEG------DVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATL 63
Query: 183 GLALAEKHLAARYNKPDNEIVDHYT-YVILGDGCQMEGIANEASSLAG----HLGLGKLI 237
G A A A P ++ + ++ + + G
Sbjct: 64 GAAFA-----AEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEK 118
Query: 238 AFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVKNGNTGYDDIRAAIKEAKAV-TDK 296
+ + + ++ F + V + ++ K
Sbjct: 119 LIHGPKAQYNE--IQGWDHLSLLPTFGAKDYETHRVAT----TGEWDKLTQDKSFNDNSK 172
Query: 297 PTLIRVTT 304
+I +
Sbjct: 173 IRMIEIML 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,639,596
Number of extensions: 125851
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 31
Length of query: 721
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 629
Effective length of database: 1,144,436
Effective search space: 719850244
Effective search space used: 719850244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)